Psyllid ID: psy1242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
Protein Sequence
RTYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVPIGALNPSPSIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRPITTPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQKTA
Secondary Structure (PSIPRED)
cHHHHcccccccccHHHHHHHHHHcccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEEEEcccccccEEEccccccccccccccccccccccccccccEEcccccccccEEEEccccccccccccEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEccccEEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEEEEEEccEEEEEEEEccccccccEEEEEEccccEEEEEEcccccccccccccccccEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEccccccccccEEEEcccccEEEEEcccEEEEEEEcccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHcHHHHHHHHHHHHHHHHHHHHHcccHccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccEEEccccccccccccccccccccccccccHHHccccccccccHHHHHcccccccEEEEEEccccccccccEEEEEEEEEcccccEEcHHHHHcHHHHHHHHHHccccHHHcccccccccccHcEEEEEEccccccEEEEcccccccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccEEcccccccccccccccccHHHccccccccEEEcccEEEEEccccEEEEEccccccEEEEEccccEEEEEEEccccccccEEEEEEEccccEEEEEEEccccccccEEEEEcccccEEEEEEEcccccccccccccccccHEEccccccEEEEEEEccccEEEEccccccEEEEEccccEEEEcccccccccccEEEEEcccEEEEEEcccEEEEEEEcccccccEccccccHHcc
Coil and Loop (DISEMBL)
rtyndlnqypvfpeFFYFIVICLItgrtyndlnqypvfpwvltnydskeldlslstnyrdlskpigalnpsrMAYFEERynswehenikpfhygthystGVYVLNWLVrvpigalnpspsiqspsyaetpgsppgnlpltldpilthptsnnnapvpkrhlgdnfsqklrvrpittplyprdiwvtISVRSYAYDITVLSLRWIVDSCWravsgitasecslrimspmmfSTVLDDVCmslkfpsnspichvtantyvTLHMPSVVTVTANHQfainrwnpdyaasiqspsyaetpgsppgnlpltldpilthptsnnnapvpkrhlgdnfsqklrvrhncfvttVDSRFLLACgfwdnsfrvfstdnARIVQIIFGHYGVVTSRIVQIIFGHYGVVTclsrsecnitadcfiasgsadCTVLLWHWnartqsivgetdtptpratltgheqpvTSVAISAELGLVvsgsqlgpvlvHTTFGdllrsldppsgfaspesvvmSREGVIVVNYERGHIAAFTMngnrlrheshndnlqkta
Flexible Loop (DISEMBL)
rtyndlnqypvFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTnyrdlskpigalnpsrMAYFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVPIGALNPSPSIQSPSYAETPGSPPGNLPLTLDPILTHPtsnnnapvpkrhlgdnfsqklrvrpittplyprdiwvtISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAftmngnrlrheshndnlqkta
Low Complexity Region (SEG)
RTYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVPIGALNPSPSIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRPITTPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQKTA
Disordered region (IsUnstruct)
*****LNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVPIGAL***************************************************QKLRVRPITTPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA********************************************NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGE***************PVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL***********VVMSREGVIVVNYERGHIAAFTMN*****************
Disordered Region (DISOPRED)
*TYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVPIGALNPSPSIQSPSYAETPGSPPGNLPLTLDPILT********PVPKRHLGDNFSQKLRVRPITTPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTA***********VTVTANHQF****************************LPLTLDPILTHPT***********LGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNA*************PRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQKTA
Disordered Region (DISEMBL)
RTYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVPIGALNPSPSI***********PPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRPITTPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS**********PGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE**********
Disordered Region (DISPRO)
*TYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVPIGALNPSPSIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRPITTPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHN**L****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RTYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVPIGALNPSPSIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRPITTPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQKTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	540	2.2.26 [Sep-21-2011]
Q9W4E2	3578	Neurobeachin OS=Drosophil	yes	N/A	0.551	0.083	0.697	1e-132
Q8NFP9	2946	Neurobeachin OS=Homo sapi	yes	N/A	0.527	0.096	0.441	2e-69
Q9EPN1	2936	Neurobeachin OS=Mus muscu	yes	N/A	0.527	0.097	0.441	2e-69
P50851	2863	Lipopolysaccharide-respon	no	N/A	0.525	0.099	0.430	2e-69
Q9ESE1	2856	Lipopolysaccharide-respon	no	N/A	0.5	0.094	0.444	6e-69
A8XSV3	2531	Putative neurobeachin hom	N/A	N/A	0.531	0.113	0.398	1e-62
Q19317	2507	Putative neurobeachin hom	yes	N/A	0.55	0.118	0.382	3e-60
Q55DM1	3619	BEACH domain-containing p	yes	N/A	0.177	0.026	0.485	2e-23
P25356	2167	Beige protein homolog 1 O	yes	N/A	0.177	0.044	0.494	3e-23
Q54U63	2491	BEACH domain-containing p	no	N/A	0.109	0.023	0.520	5e-23

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3

 Score =  473 bits (1217), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 219/314 (69%), Positives = 261/314 (83%), Gaps = 16/314 (5%)

Query: 225  MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            +SPMMFS + +D+C  LKF  NSP+ H++ANTY  L +PSVVTVTA HQFA+NRWN +Y 
Sbjct: 3200 LSPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYT 3259

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV 343
            AS+QSPSYAE+P SP  N PLT+DP+L  H T+NN+    +RHLGDNFSQ L++R NCFV
Sbjct: 3260 ASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFV 3319

Query: 344  TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS 403
            TTVDSRFL+ACGFWDNSFRVF+T+               T++IVQI+FGH+GVVTC++RS
Sbjct: 3320 TTVDSRFLIACGFWDNSFRVFATE---------------TAKIVQIVFGHFGVVTCMARS 3364

Query: 404  ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL 463
            ECNIT+DC+IASGSADCTVLLWHWNARTQSIVGE D PTPRATLTGHEQ VTSV ISAEL
Sbjct: 3365 ECNITSDCYIASGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAEL 3424

Query: 464  GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN 523
            GLVVSGS  GPVL+HTTFGDLLRSLDPP+ F SPE + MSREG IV+NY++G++AA+T+N
Sbjct: 3425 GLVVSGSSNGPVLIHTTFGDLLRSLDPPAEFHSPELITMSREGFIVINYDKGNVAAYTIN 3484

Query: 524  GNRLRHESHNDNLQ 537
            G +LRHE+HNDNLQ
Sbjct: 3485 GKKLRHETHNDNLQ 3498

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Required for correct retinal pattern formation and may function in cell fate determination through its interactions with the EGFR and Notch signaling pathways.
Drosophila melanogaster (taxid: 7227)

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3

 Score =  264 bits (674), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/315 (44%), Positives = 194/315 (61%), Gaps = 30/315 (9%)

Query: 226  SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+ +  
Sbjct: 2575 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWH-NTV 2633

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
                +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV 
Sbjct: 2634 GLRGAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2685

Query: 345  TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
            T D+R++L CGFWD SFRV+ST+               T ++ QI+FGH+ VVTCL+RSE
Sbjct: 2686 TADNRYILICGFWDKSFRVYSTE---------------TGKLTQIVFGHWDVVTCLARSE 2730

Query: 405  CNITADCFIASGSADCTVLLWHWNARTQSIVGE----TDTPTPRATLTGHEQPVTSVAIS 460
              I  DC+I SGS D T+LLW+W+ R   I+G+    +D P PRA LTGH+  V  V++ 
Sbjct: 2731 SYIGGDCYIVSGSRDATLLLWYWSGR-HHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVC 2789

Query: 461  AELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAF 520
            AELGLV+SG++ GP LVHT  GDLLR+L+ P     P  + +S EG  ++ YERG  + F
Sbjct: 2790 AELGLVISGAKEGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNF 2849

Query: 521  TMNGNRLRHESHNDN 535
            ++NG  L     ND+
Sbjct: 2850 SINGKLLAQMEINDS 2864

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.

Homo sapiens (taxid: 9606)

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1

 Score =  263 bits (673), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/315 (44%), Positives = 194/315 (61%), Gaps = 30/315 (9%)

Query: 226  SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+ +  
Sbjct: 2565 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWH-NTV 2623

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
                +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV 
Sbjct: 2624 GLRGAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFVV 2675

Query: 345  TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
            T D+R++L CGFWD SFRV+ST+               T ++ QI+FGH+ VVTCL+RSE
Sbjct: 2676 TADNRYILICGFWDKSFRVYSTE---------------TGKLTQIVFGHWDVVTCLARSE 2720

Query: 405  CNITADCFIASGSADCTVLLWHWNARTQSIVGE----TDTPTPRATLTGHEQPVTSVAIS 460
              I  DC+I SGS D T+LLW+W+ R   I+G+    +D P PRA LTGH+  V  V++ 
Sbjct: 2721 SYIGGDCYIVSGSRDATLLLWYWSGR-HHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVC 2779

Query: 461  AELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAF 520
            AELGLV+SG++ GP LVHT  GDLLR+L+ P     P  + +S EG  ++ YERG  + F
Sbjct: 2780 AELGLVISGAKEGPCLVHTITGDLLRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNF 2839

Query: 521  TMNGNRLRHESHNDN 535
            ++NG  L     ND+
Sbjct: 2840 SINGKLLAQMEINDS 2854

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking.

Mus musculus (taxid: 10090)

>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4

 Score =  263 bits (672), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/318 (43%), Positives = 191/318 (60%), Gaps = 34/318 (10%)

Query: 225  MSPMMFS-TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN--P 281
            +SP+MF+     DV M LKFPSNSP+ HV ANT   L  P+V+TVTAN  FA+N+W+  P
Sbjct: 2495 VSPLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNLP 2554

Query: 282  DYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNC 341
             +  ++Q   Y          LP+ +DP++      +N  + +R + D   Q ++V   C
Sbjct: 2555 AHQGAVQDQPY---------QLPVEIDPLIA-----SNTGMHRRQITDLLDQSIQVHSQC 2600

Query: 342  FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS 401
            FV T D+R++L CGFWD SFRV+STD               T R++Q++FGH+ VVTCL+
Sbjct: 2601 FVITSDNRYILVCGFWDKSFRVYSTD---------------TGRLIQVVFGHWDVVTCLA 2645

Query: 402  RSECNITADCFIASGSADCTVLLWHWNARTQSIVGE--TDTPTPRATLTGHEQPVTSVAI 459
            RSE  I  +C+I SGS D T+LLW+WN +   I     ++T  PRA LTGH+  VT  A+
Sbjct: 2646 RSESYIGGNCYILSGSRDATLLLWYWNGKCSGIGDNPGSETAAPRAILTGHDYEVTCAAV 2705

Query: 460  SAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAA 519
             AELGLV+SGSQ GP L+H+  GDLLR+L+ P     P+ +  SREG  V+ YE G    
Sbjct: 2706 CAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGLFCT 2765

Query: 520  FTMNGNRLRHESHNDNLQ 537
            F++NG        +DN++
Sbjct: 2766 FSVNGKLQATMETDDNIR 2783

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Homo sapiens (taxid: 9606)

>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1

 Score =  262 bits (669), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 136/306 (44%), Positives = 188/306 (61%), Gaps = 36/306 (11%)

Query: 226  SPMMFS-TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN--PD 282
            SP+MF+     DV M LKFPSNSP+ HV ANT   L MP+V+TVTAN  FA+N+W+  P 
Sbjct: 2489 SPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNLPA 2548

Query: 283  YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF 342
            +  ++Q   Y          LP+ +DP++   T  +     +R + D   Q ++V   CF
Sbjct: 2549 HQGAVQDQPY---------QLPVEIDPLIACGTGTH-----RRQVTDLLDQSIQVHSQCF 2594

Query: 343  VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR 402
            V T D+R++L CGFWD SFRV+STD               T +++Q++FGH+ VVTCL+R
Sbjct: 2595 VITSDNRYILVCGFWDKSFRVYSTD---------------TGKLIQVVFGHWDVVTCLAR 2639

Query: 403  SECNITADCFIASGSADCTVLLWHWNARTQSIVGET---DTPTPRATLTGHEQPVTSVAI 459
            SE  I  +C+I SGS D T+LLW+WN ++  I G+    +T TPRA LTGH+  +T  A+
Sbjct: 2640 SESYIGGNCYILSGSRDATLLLWYWNGKSSGI-GDNPGGETATPRAILTGHDYEITCAAV 2698

Query: 460  SAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAA 519
             AELGLV+SGSQ GP L+H+  GDLLR+L+ P     P+ +  SREG  V+ YE G    
Sbjct: 2699 CAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGCFCT 2758

Query: 520  FTMNGN 525
            F++NG 
Sbjct: 2759 FSVNGK 2764

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Mus musculus (taxid: 10090)

>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2 PE=3 SV=1

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/314 (39%), Positives = 192/314 (61%), Gaps = 27/314 (8%)

Query: 221  SLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN 280
            S+  M+P MF    DD+CM +K+ SNSP+ ++ ANT+  L  P+VV V  N  F++N+W+
Sbjct: 2132 SIMTMAPTMFRRHDDDLCMMMKYISNSPVVYLAANTFHQLPHPTVVGVAQNLVFSLNKWD 2191

Query: 281  PDYA-ASIQSPSYAETPGSPPGN--LPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV 337
              Y+  S Q  + +  P +  G   LPLT DP L   T+ +  P+ +RHLGD F Q+L+V
Sbjct: 2192 NSYSYGSTQRSALSMDPSNVEGQVALPLTADPQLA--TAASTTPIARRHLGDAFDQRLQV 2249

Query: 338  RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVV 397
            + + FVTT DS+++ ACG+ D SFR+  TD+ R               + Q ++GH  VV
Sbjct: 2250 QCSNFVTTTDSKYIFACGYPDYSFRIVDTDSGR---------------VRQAVYGHGDVV 2294

Query: 398  TCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGE----TDTPTPRATLTGHEQP 453
            TC++RSE ++ +DC++ +GS DCTV+LWHWN  T  I GE     + P+PR+ LTGHE  
Sbjct: 2295 TCIARSETSLFSDCYVVTGSMDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEAS 2354

Query: 454  VTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE 513
            ++++ +SAE GLVVSG + G +L+HTT  DLLR +    G  +   + MSRE +++V ++
Sbjct: 2355 ISALCVSAEHGLVVSGCEDGVILIHTTASDLLRRI---RGHGTVTQLSMSRECILLVLFD 2411

Query: 514  RGHIAAFTMNGNRL 527
               +  ++    +L
Sbjct: 2412 SKRMTTYSSTARKL 2425

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2 SV=3

 Score =  233 bits (594), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/324 (38%), Positives = 190/324 (58%), Gaps = 27/324 (8%)

Query: 221  SLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN 280
            S+  M+P MF    +D+CM +K+ SNSP+ ++ ANT+  L  P+VV V  N  F++N+W+
Sbjct: 2108 SIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQPTVVGVAQNLVFSLNKWD 2167

Query: 281  PDYA-ASIQSPSYAETPGSPPGN--LPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV 337
              Y+  + Q  + +  P +  G   LPLT D  L    S    PV +RHLGD F Q+L V
Sbjct: 2168 NSYSYGASQRSALSMDPSNAEGQVSLPLTADAQLASAASTT--PVARRHLGDAFDQRLTV 2225

Query: 338  RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVV 397
            + + FVTT DS+F+ ACG+ D SFR+  TD+ R               + Q ++GH  VV
Sbjct: 2226 QCSNFVTTTDSKFIFACGYPDYSFRIVDTDSGR---------------VRQAVYGHGDVV 2270

Query: 398  TCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGE----TDTPTPRATLTGHEQP 453
            TC++RSE ++ +DC++ +GS DCTV+LWHWN  T  I GE     + P+PR+ LTGHE  
Sbjct: 2271 TCIARSETSLFSDCYVVTGSMDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEAS 2330

Query: 454  VTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE 513
            ++++ +SAE GLVVSG + G +L+HTT  DLLR +    G      + MSRE +++  ++
Sbjct: 2331 ISALCVSAEHGLVVSGCEDGVILIHTTSSDLLRRI---RGHGIVTQLSMSRECILLSLFD 2387

Query: 514  RGHIAAFTMNGNRLRHESHNDNLQ 537
               +  ++    +L     +D ++
Sbjct: 2388 SKRMVTYSATAKKLDEVLVDDKIE 2411

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins (By similarity). Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis elegans (taxid: 6239)

>sp|Q55DM1|LVSA_DICDI BEACH domain-containing protein lvsA OS=Dictyostelium discoideum GN=lvsA PE=4 SV=2

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 7/103 (6%)

Query: 15   FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
            F Y + +  + GR+YNDL QYPVFPWVL++Y+S+ELD+     YRDLSKP+GAL  SR  
Sbjct: 2995 FQYLMHLNTLAGRSYNDLTQYPVFPWVLSDYESEELDIDDPKVYRDLSKPMGALEESRAQ 3054

Query: 75   YFEERYNSWEHE-------NIKPFHYGTHYSTGVYVLNWLVRV 110
             F ER+ +W+ +        +  FHYGTHYS+   VL +L+R+
Sbjct: 3055 KFRERFENWDDQEPNEHGHKVPKFHYGTHYSSAAIVLYYLIRL 3097

Involved in myosin-independent cytokinesis and early steps of phagocytosis. Also involved in contractile vacuole-mediated osmoregulation.

Dictyostelium discoideum (taxid: 44689)

>sp|P25356|BPH1_YEAST Beige protein homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BPH1 PE=4 SV=2

 Score =  110 bits (275), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 3/99 (3%)

Query: 15   FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
            F+Y + I ++ GR++NDL QYPVFPWV+ +Y+S  LDL     YRDLSKP+GA +  R  
Sbjct: 1568 FYYLLSINILAGRSFNDLTQYPVFPWVIADYESNVLDLENPKTYRDLSKPMGAQSEKRKL 1627

Query: 75   YFEERYN---SWEHENIKPFHYGTHYSTGVYVLNWLVRV 110
             F ERY    S E+ +  PFHYGTHYS+ + V ++L+R+
Sbjct: 1628 QFIERYEALASLENADSAPFHYGTHYSSAMIVSSYLIRL 1666

May be involved in protein sorting and cell wall formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2

 Score =  109 bits (273), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 68/96 (70%)

Query: 15   FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
            F Y + +  I GRTYNDL QYPVFPWV+ +Y S  LDL+ +  +RDLSKPIGALN  R+ 
Sbjct: 1851 FDYLMTLNTIAGRTYNDLTQYPVFPWVIADYTSPVLDLNKAETFRDLSKPIGALNEKRLE 1910

Query: 75   YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRV 110
             F++RY S++   I  F+YG+HYS+   VL +L+R+
Sbjct: 1911 IFKDRYESFDDPVIPKFYYGSHYSSAGIVLFYLIRL 1946

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
345481241	3146	PREDICTED: neurobeachin-like [Nasonia vi	0.551	0.094	0.742	1e-139
350417191	3204	PREDICTED: neurobeachin-like [Bombus imp	0.55	0.092	0.734	1e-137
340715018	3204	PREDICTED: neurobeachin-like [Bombus ter	0.55	0.092	0.734	1e-137
328788933	2942	PREDICTED: neurobeachin-like, partial [A	0.551	0.101	0.729	1e-136
332025325	732	Neurobeachin [Acromyrmex echinatior]	0.551	0.407	0.731	1e-136
307174192	769	Neurobeachin [Camponotus floridanus]	0.551	0.387	0.731	1e-136
380020287	2983	PREDICTED: neurobeachin-like [Apis flore	0.55	0.099	0.728	1e-136
383855622	3257	PREDICTED: neurobeachin-like [Megachile	0.546	0.090	0.734	1e-136
328714736	3079	PREDICTED: neurobeachin-like [Acyrthosip	0.55	0.096	0.725	1e-133
195396793	3654	GJ16846 [Drosophila virilis] gi|19414678	0.551	0.081	0.703	1e-131

>gi|345481241|ref|XP_001602669.2| PREDICTED: neurobeachin-like [Nasonia vitripennis]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/314 (74%), Positives = 270/314 (85%), Gaps = 16/314 (5%)

Query: 224  IMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY 283
            + SPMMFS++ DDVCM+LKFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +Y
Sbjct: 2769 VSSPMMFSSIPDDVCMTLKFPSNSPICHISANTYPQLPLPSVVTVTVGQQFAVNRWNTNY 2828

Query: 284  AASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV 343
            AAS+QSPSYA+TP +   N PL++DPIL+  T+N++ P  +RHLGDNFSQKL++R NCFV
Sbjct: 2829 AASVQSPSYADTPQAQAANQPLSMDPILSQ-TANSSNPALRRHLGDNFSQKLKIRSNCFV 2887

Query: 344  TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS 403
            TTVDSRFL+ACGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRS
Sbjct: 2888 TTVDSRFLVACGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRS 2932

Query: 404  ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL 463
            ECNIT+DC+IASGSADCTVLLWHWNARTQ+IVGE + P PRATLTGHEQPVT+V ISAEL
Sbjct: 2933 ECNITSDCYIASGSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAEL 2992

Query: 464  GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN 523
            GLVVSGS  GPVLVHTTFGDLLRSL+PPSGF+SPE++ MSREGVIV NYERGHIAAFT+N
Sbjct: 2993 GLVVSGSYCGPVLVHTTFGDLLRSLEPPSGFSSPENIAMSREGVIVANYERGHIAAFTIN 3052

Query: 524  GNRLRHESHNDNLQ 537
            G RLR+ESHNDNLQ
Sbjct: 3053 GKRLRYESHNDNLQ 3066

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417191|ref|XP_003491301.1| PREDICTED: neurobeachin-like [Bombus impatiens]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 230/313 (73%), Positives = 268/313 (85%), Gaps = 16/313 (5%)

Query: 225  MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            +SPMMFS++ DDVCM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YA
Sbjct: 2828 LSPMMFSSIPDDVCMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYA 2887

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
            AS+QSPSYA+TP +   N PL++DP+L+   ++ N P  +RHLGDNFSQKL++R NCFVT
Sbjct: 2888 ASVQSPSYADTPQAQAANQPLSMDPVLSQAANSPN-PTLRRHLGDNFSQKLKIRSNCFVT 2946

Query: 345  TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
            TVDSRFL+ACGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRSE
Sbjct: 2947 TVDSRFLVACGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRSE 2991

Query: 405  CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
            CNIT+DC+IASGSADCTVLLWHWNARTQ+IVGE + P PRATLTGHEQPVT+V ISAELG
Sbjct: 2992 CNITSDCYIASGSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAELG 3051

Query: 465  LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524
            LVVSGS  GPVLVHTTFGDLLRSL+ P+GF+SPE++ MSREGVIVVNYERGHIAAFT+NG
Sbjct: 3052 LVVSGSYYGPVLVHTTFGDLLRSLEAPNGFSSPENISMSREGVIVVNYERGHIAAFTING 3111

Query: 525  NRLRHESHNDNLQ 537
             RLRHESHNDNLQ
Sbjct: 3112 KRLRHESHNDNLQ 3124

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715018|ref|XP_003396018.1| PREDICTED: neurobeachin-like [Bombus terrestris]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 230/313 (73%), Positives = 268/313 (85%), Gaps = 16/313 (5%)

Query: 225  MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            +SPMMFS++ DDVCM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YA
Sbjct: 2828 LSPMMFSSIPDDVCMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYA 2887

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
            AS+QSPSYA+TP +   N PL++DP+L+   ++ N P  +RHLGDNFSQKL++R NCFVT
Sbjct: 2888 ASVQSPSYADTPQAQAANQPLSMDPVLSQAANSPN-PTLRRHLGDNFSQKLKIRSNCFVT 2946

Query: 345  TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
            TVDSRFL+ACGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRSE
Sbjct: 2947 TVDSRFLVACGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRSE 2991

Query: 405  CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
            CNIT+DC+IASGSADCTVLLWHWNARTQ+IVGE + P PRATLTGHEQPVT+V ISAELG
Sbjct: 2992 CNITSDCYIASGSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAELG 3051

Query: 465  LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524
            LVVSGS  GPVLVHTTFGDLLRSL+ P+GF+SPE++ MSREGVIVVNYERGHIAAFT+NG
Sbjct: 3052 LVVSGSYYGPVLVHTTFGDLLRSLEAPNGFSSPENISMSREGVIVVNYERGHIAAFTING 3111

Query: 525  NRLRHESHNDNLQ 537
             RLRHESHNDNLQ
Sbjct: 3112 KRLRHESHNDNLQ 3124

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788933|ref|XP_003251209.1| PREDICTED: neurobeachin-like, partial [Apis mellifera]

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/314 (72%), Positives = 269/314 (85%), Gaps = 16/314 (5%)

Query: 224  IMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDY 283
            + SPMMFS++ DD+CM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +Y
Sbjct: 2565 LQSPMMFSSIPDDICMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNY 2624

Query: 284  AASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV 343
            AAS+QSPSYA+TP +   N PL++DP+L+   +++N P  +RHLGDNFSQKL++R NCFV
Sbjct: 2625 AASVQSPSYADTPQAQAANQPLSMDPVLSQAANSSN-PTLRRHLGDNFSQKLKIRSNCFV 2683

Query: 344  TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS 403
            TTVDSRFL+ACGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRS
Sbjct: 2684 TTVDSRFLVACGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRS 2728

Query: 404  ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL 463
            ECNIT+DC+IASGSADCTVLLWHWNARTQ+IVGE + P PRATLTGHEQPVT+V ISAEL
Sbjct: 2729 ECNITSDCYIASGSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAEL 2788

Query: 464  GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN 523
            GLVVSGS  GPVLVHTTFGDLLRSL+ P+GF+SPE++ MSREGVIVVNYERGHIAAFT+N
Sbjct: 2789 GLVVSGSYYGPVLVHTTFGDLLRSLEAPNGFSSPENIAMSREGVIVVNYERGHIAAFTIN 2848

Query: 524  GNRLRHESHNDNLQ 537
            G RLRHESHNDNLQ
Sbjct: 2849 GKRLRHESHNDNLQ 2862

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025325|gb|EGI65493.1| Neurobeachin [Acromyrmex echinatior]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/313 (73%), Positives = 269/313 (85%), Gaps = 15/313 (4%)

Query: 225 MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
           +SPMMFS++ DDVCM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YA
Sbjct: 355 LSPMMFSSIPDDVCMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYA 414

Query: 285 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
           AS+QSPSYA+TP +   N PL++DP+L+   +++N  + +RHLGDNFSQKL++R NCFVT
Sbjct: 415 ASVQSPSYADTPQAQAANQPLSMDPVLSQAANSSNPTLQRRHLGDNFSQKLKIRSNCFVT 474

Query: 345 TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
           TVDSRFL+ACGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRSE
Sbjct: 475 TVDSRFLVACGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRSE 519

Query: 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
           CNIT+DC+IASGSADCTVLLWHWNARTQ+IVGE + P PRATLTGHEQPVT+V ISAELG
Sbjct: 520 CNITSDCYIASGSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAELG 579

Query: 465 LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524
           LVVSGS  GPVLVHTTFGDLLRSL+ P+GF+SPE++ MSREGVIVVNYERGHIAAFT+NG
Sbjct: 580 LVVSGSHYGPVLVHTTFGDLLRSLEAPNGFSSPENIAMSREGVIVVNYERGHIAAFTING 639

Query: 525 NRLRHESHNDNLQ 537
            RLRHESHNDNLQ
Sbjct: 640 KRLRHESHNDNLQ 652

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174192|gb|EFN64837.1| Neurobeachin [Camponotus floridanus]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/313 (73%), Positives = 269/313 (85%), Gaps = 15/313 (4%)

Query: 225 MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
           +SPMMFS++ DDVCM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YA
Sbjct: 392 LSPMMFSSIPDDVCMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYA 451

Query: 285 ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
           AS+QSPSYA+TP +   N PL++DP+L+   +++N  + +RHLGDNFSQKL++R NCFVT
Sbjct: 452 ASVQSPSYADTPQAQAANQPLSMDPVLSQAANSSNPMLQRRHLGDNFSQKLKIRSNCFVT 511

Query: 345 TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
           TVDSRFL+ACGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRSE
Sbjct: 512 TVDSRFLVACGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRSE 556

Query: 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
           CNIT+DC+IASGSADCTVLLWHWNARTQ+IVGE + P PRATLTGHEQPVT+V ISAELG
Sbjct: 557 CNITSDCYIASGSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAELG 616

Query: 465 LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524
           LVVSGS  GPVLVHTTFGDLLRSL+ P+GF+SPE++ MSREGVIVVNYERGHIAAFT+NG
Sbjct: 617 LVVSGSHYGPVLVHTTFGDLLRSLEAPNGFSSPENIAMSREGVIVVNYERGHIAAFTING 676

Query: 525 NRLRHESHNDNLQ 537
            RLRHESHNDNLQ
Sbjct: 677 KRLRHESHNDNLQ 689

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020287|ref|XP_003694021.1| PREDICTED: neurobeachin-like [Apis florea]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/313 (72%), Positives = 268/313 (85%), Gaps = 16/313 (5%)

Query: 225  MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            +SPMMFS++ DD+CM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YA
Sbjct: 2607 LSPMMFSSIPDDICMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYA 2666

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
            AS+QSPSYA+TP +   N PL++DP+L+   +++N P  +RHLGDNFSQKL++R NCFVT
Sbjct: 2667 ASVQSPSYADTPQAQAANQPLSMDPVLSQAANSSN-PTLRRHLGDNFSQKLKIRSNCFVT 2725

Query: 345  TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
            TVDSRFL+ACGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRSE
Sbjct: 2726 TVDSRFLVACGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRSE 2770

Query: 405  CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
            CNIT+DC+IASGSADCTVLLWHWNARTQ+IVGE + P PRATLTGHEQPVT+V ISAELG
Sbjct: 2771 CNITSDCYIASGSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAELG 2830

Query: 465  LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524
            LVVSGS  GPVLVHTTFGDLLRSL+ P+GF+ PE++ MSREGVIVVNYERGHIAAFT+NG
Sbjct: 2831 LVVSGSYYGPVLVHTTFGDLLRSLEAPNGFSLPENIAMSREGVIVVNYERGHIAAFTING 2890

Query: 525  NRLRHESHNDNLQ 537
             RLRHESHNDNLQ
Sbjct: 2891 KRLRHESHNDNLQ 2903

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855622|ref|XP_003703309.1| PREDICTED: neurobeachin-like [Megachile rotundata]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/313 (73%), Positives = 267/313 (85%), Gaps = 18/313 (5%)

Query: 225  MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            +SPMMFS++ DDVCM++KFPSNSPICH++ANTY  L +PSVVTVT   QFA+NRWN +YA
Sbjct: 2883 LSPMMFSSIPDDVCMTIKFPSNSPICHISANTYPQLPLPSVVTVTTGQQFAVNRWNTNYA 2942

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
            AS+QSPSYA+TP +   N P+++DP+L+  +SN   P  +RHLGDNFSQKL +R NCFVT
Sbjct: 2943 ASVQSPSYADTPQAQAANQPMSMDPVLSANSSN---PTLRRHLGDNFSQKLTIRSNCFVT 2999

Query: 345  TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
            TVDSRFL+ACGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRSE
Sbjct: 3000 TVDSRFLVACGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRSE 3044

Query: 405  CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
            CNIT+DC+IASGSADCTVLLWHWNARTQ+IVGE + P PRATLTGHEQPVT+V ISAELG
Sbjct: 3045 CNITSDCYIASGSADCTVLLWHWNARTQTIVGEGEAPAPRATLTGHEQPVTAVVISAELG 3104

Query: 465  LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524
            LVVSGS  GPVLVHTTFGDLLRSL+ P+GF+SPE++ MSREGVIVVNYERGHIAAFT+NG
Sbjct: 3105 LVVSGSYYGPVLVHTTFGDLLRSLEAPNGFSSPENIAMSREGVIVVNYERGHIAAFTING 3164

Query: 525  NRLRHESHNDNLQ 537
             RLRHESHNDNLQ
Sbjct: 3165 KRLRHESHNDNLQ 3177

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714736|ref|XP_001947075.2| PREDICTED: neurobeachin-like [Acyrthosiphon pisum]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/313 (72%), Positives = 263/313 (84%), Gaps = 16/313 (5%)

Query: 225  MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            +SPMMF+++ DDVCM++KFPSNSPICH++ANT+  L MP+VVTVT N QFAINRWN +Y+
Sbjct: 2703 ISPMMFTSIPDDVCMTMKFPSNSPICHISANTFPQLPMPAVVTVTTNMQFAINRWNTNYS 2762

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVT 344
             +IQSPSYAE+P  P  NLPL +D ILT   SN N  + KRHLGDNFSQKL+++ NCFVT
Sbjct: 2763 VTIQSPSYAESPQQPNVNLPLVMDQILTQSNSNMNVTL-KRHLGDNFSQKLKIKWNCFVT 2821

Query: 345  TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE 404
            TVDSRFL+ CGFWDNSFRVFST+               T++IVQI+FGHYGVVTCLSRSE
Sbjct: 2822 TVDSRFLIVCGFWDNSFRVFSTE---------------TAKIVQIVFGHYGVVTCLSRSE 2866

Query: 405  CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
            CNIT+DC+IASGS+DCT+LLWHWNAR+Q+IVGE D PTPRATLTGHEQPVTSVAISAELG
Sbjct: 2867 CNITSDCYIASGSSDCTILLWHWNARSQTIVGEGDHPTPRATLTGHEQPVTSVAISAELG 2926

Query: 465  LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG 524
            LVVS S  GPVLVHTTFGDLLRSLDPP+GF +PE  VMSREG+IVVNYE G IAAFT+NG
Sbjct: 2927 LVVSASSGGPVLVHTTFGDLLRSLDPPNGFENPECAVMSREGIIVVNYEHGSIAAFTING 2986

Query: 525  NRLRHESHNDNLQ 537
             RLRH +HNDN+Q
Sbjct: 2987 KRLRHTTHNDNIQ 2999

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396793|ref|XP_002057013.1| GJ16846 [Drosophila virilis] gi|194146780|gb|EDW62499.1| GJ16846 [Drosophila virilis]

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/314 (70%), Positives = 262/314 (83%), Gaps = 16/314 (5%)

Query: 225  MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
            +SPMMFS + +D+C  LKF  NSPI H++ANTY  L +PSVVTVTA HQFA+NRWN +Y 
Sbjct: 3276 LSPMMFSAMPEDLCQMLKFYQNSPIIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYT 3335

Query: 285  ASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV 343
            AS+QSPSYAE+P SP  N PLT+DP+L  H T+NN+  V +RHLGDNFSQ L++R NCFV
Sbjct: 3336 ASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAVSRRHLGDNFSQMLKIRSNCFV 3395

Query: 344  TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS 403
            TTVDSRFL+ACGFWDNSFRVF+T+               T++IVQI+FGH+GVVTC++RS
Sbjct: 3396 TTVDSRFLIACGFWDNSFRVFATE---------------TAKIVQIVFGHFGVVTCMARS 3440

Query: 404  ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL 463
            ECNIT+DC+IASGSADCTVLLWHWNARTQSIVGE D PTPRATLTGHEQ VTSV ISAEL
Sbjct: 3441 ECNITSDCYIASGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAEL 3500

Query: 464  GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN 523
            GLVVSGS  GPVL+HTTFGDLLRSLDPP+ F SPE + MSREG IV+NY++G++AA+T+N
Sbjct: 3501 GLVVSGSTNGPVLIHTTFGDLLRSLDPPADFNSPELITMSREGFIVINYDKGNVAAYTIN 3560

Query: 524  GNRLRHESHNDNLQ 537
            G +LRHE+HNDNLQ
Sbjct: 3561 GKKLRHETHNDNLQ 3574

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
FB|FBgn0086911	3578	rg "rugose" [Drosophila melano	0.551	0.083	0.697	4.7e-158
UNIPROTKB|E1C6E6	2850	LRBA "Uncharacterized protein"	0.518	0.098	0.435	1.3e-95
UNIPROTKB|F1P3D0	2855	NBEA "Neurobeachin" [Gallus ga	0.529	0.100	0.433	5.4e-95
WB|WBGene00004760	2507	sel-2 [Caenorhabditis elegans	0.55	0.118	0.385	1.8e-86
UNIPROTKB|B7Z2H9	739	NBEA "Uncharacterized protein"	0.390	0.285	0.450	1.7e-84
UNIPROTKB|E1BND6	2786	Bt.111067 "Uncharacterized pro	0.396	0.076	0.426	9.4e-82
MGI|MGI:1347075	2936	Nbea "neurobeachin" [Mus muscu	0.390	0.071	0.450	1.7e-81
UNIPROTKB|P50851	2863	LRBA "Lipopolysaccharide-respo	0.394	0.074	0.435	2.1e-81
UNIPROTKB|F1MF64	2809	NBEA "Uncharacterized protein"	0.390	0.075	0.450	4e-81
UNIPROTKB|Q8NFP9	2946	NBEA "Neurobeachin" [Homo sapi	0.390	0.071	0.450	4.6e-81

FB|FBgn0086911 rg "rugose" [Drosophila melanogaster (taxid:7227)]

 Score = 1184 (421.8 bits), Expect = 4.7e-158, Sum P(2) = 4.7e-158
 Identities = 219/314 (69%), Positives = 261/314 (83%)

Query:   225 MSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
             +SPMMFS + +D+C  LKF  NSP+ H++ANTY  L +PSVVTVTA HQFA+NRWN +Y 
Sbjct:  3200 LSPMMFSAMPEDLCQMLKFYQNSPVIHISANTYPQLSLPSVVTVTAGHQFAVNRWNCNYT 3259

Query:   285 ASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV 343
             AS+QSPSYAE+P SP  N PLT+DP+L  H T+NN+    +RHLGDNFSQ L++R NCFV
Sbjct:  3260 ASVQSPSYAESPQSPGSNQPLTIDPVLAVHGTNNNSNAASRRHLGDNFSQMLKIRSNCFV 3319

Query:   344 TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS 403
             TTVDSRFL+ACGFWDNSFRVF+T+               T++IVQI+FGH+GVVTC++RS
Sbjct:  3320 TTVDSRFLIACGFWDNSFRVFATE---------------TAKIVQIVFGHFGVVTCMARS 3364

Query:   404 ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL 463
             ECNIT+DC+IASGSADCTVLLWHWNARTQSIVGE D PTPRATLTGHEQ VTSV ISAEL
Sbjct:  3365 ECNITSDCYIASGSADCTVLLWHWNARTQSIVGEGDVPTPRATLTGHEQAVTSVVISAEL 3424

Query:   464 GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN 523
             GLVVSGS  GPVL+HTTFGDLLRSLDPP+ F SPE + MSREG IV+NY++G++AA+T+N
Sbjct:  3425 GLVVSGSSNGPVLIHTTFGDLLRSLDPPAEFHSPELITMSREGFIVINYDKGNVAAYTIN 3484

Query:   524 GNRLRHESHNDNLQ 537
             G +LRHE+HNDNLQ
Sbjct:  3485 GKKLRHETHNDNLQ 3498

GO:0016021 "integral to membrane" evidence=IDA

GO:0008104 "protein localization" evidence=NAS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0051018 "protein kinase A binding" evidence=NAS;IDA

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0016319 "mushroom body development" evidence=IMP

UNIPROTKB|E1C6E6 LRBA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 635 (228.6 bits), Expect = 1.3e-95, Sum P(2) = 1.3e-95
 Identities = 141/324 (43%), Positives = 195/324 (60%)

Query:   225 MSPMMFST-VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN--P 281
             +SP+MF+     DV M LKFPSNSP+ HV ANT   L  P+V+TVTAN  FA+N+W+  P
Sbjct:  2475 VSPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLTNPAVITVTANRLFAVNKWHNLP 2534

Query:   282 DYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNC 341
              +  ++Q   Y          LP+ +DP++      +N  + +R + D   Q ++V   C
Sbjct:  2535 AHQGAVQDQPY---------QLPVEIDPLIA-----SNTGMHRRQITDLLDQSIQVHSQC 2580

Query:   342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS 401
             FV T D+R++L CGFWD SFRV+STD+ +++Q+IFGH+ VVT               CL+
Sbjct:  2581 FVITSDNRYILVCGFWDKSFRVYSTDSGKLMQVIFGHWDVVT---------------CLA 2625

Query:   402 RSECNITADCFIASGSADCTVLLWHWNARTQSIVG----ETDTPTPRATLTGHEQPVTSV 457
             RSE  I  +C+I SGS D T+LLW+WN +T +IVG    E D  TPRA LTGH+  +T  
Sbjct:  2626 RSESYIGGNCYILSGSRDATLLLWYWNGKT-NIVGDNPREGDFATPRAILTGHDYEITCA 2684

Query:   458 AISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPES------VVMSREGVIVVN 511
              I AELGLV+SGS+ GP L+H+  GDLLR+L+ P     PE+      +  SREG  V+ 
Sbjct:  2685 TICAELGLVISGSKEGPCLIHSMNGDLLRTLEGPETLEGPENCLRPKLIQASREGQCVIY 2744

Query:   512 YERGHIAAFTMNGNRLRHESHNDN 535
             YE G    F++NG RL+     D+
Sbjct:  2745 YENGLFCVFSVNG-RLQATMETDD 2767

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|F1P3D0 NBEA "Neurobeachin" [Gallus gallus (taxid:9031)]

 Score = 646 (232.5 bits), Expect = 5.4e-95, Sum P(2) = 5.4e-95
 Identities = 138/318 (43%), Positives = 194/318 (61%)

Query:   226 SPMMFSTVLD-DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA 284
             SP+MF   +  DV M LKFPSNSP+ HV ANT   L +P+VVTVT +  FA+NRW+    
Sbjct:  2480 SPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVD 2539

Query:   285 ASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV 343
               ++ +P Y+        +LP+ +DP++      NN+ V KR + D   Q +++  +CFV
Sbjct:  2540 LGLRGAPGYSLDQAH---HLPIEMDPLIA-----NNSGVNKRQITDLVDQSIQINAHCFV 2591

Query:   344 TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS 403
              T D+R++L CGFWD SFRV+ST+               T ++ QI+FGH+ VVTCL+RS
Sbjct:  2592 VTADNRYILICGFWDKSFRVYSTE---------------TGKLTQIVFGHWDVVTCLARS 2636

Query:   404 ECNITADCFIASGSADCTVLLWHWNARTQSIVGE----TDTPTPRATLTGHEQPVTSVAI 459
             E  I  DC+I SGS D T+LLW+W+ R   I+G+    +D P PRA LTGH+  V  V++
Sbjct:  2637 ESYIGGDCYIVSGSRDATLLLWYWSGR-HHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSV 2695

Query:   460 SAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHI 517
              AELGLV+SG++   GP LVHT  GDLLR+L+       P  + +S EG  ++ YERG  
Sbjct:  2696 CAELGLVISGAKDTEGPCLVHTITGDLLRALEGTENCLYPRLISVSSEGHCIIYYERGRF 2755

Query:   518 AAFTMNGNRLRHESHNDN 535
             + F++NG  L     ND+
Sbjct:  2756 SNFSINGKLLAQMEINDS 2773

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

WB|WBGene00004760 sel-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 578 (208.5 bits), Expect = 1.8e-86, Sum P(2) = 1.8e-86
 Identities = 125/324 (38%), Positives = 192/324 (59%)

Query:   221 SLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWN 280
             S+  M+P MF    +D+CM +K+ SNSP+ ++ ANT+  L  P+VV V  N  F++N+W+
Sbjct:  2108 SIMSMAPTMFRRHDEDLCMMMKYISNSPVVYLAANTFHQLPQPTVVGVAQNLVFSLNKWD 2167

Query:   281 PDYA-ASIQSPSYAETPGSPPG--NLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV 337
               Y+  + Q  + +  P +  G  +LPLT D  L    S    PV +RHLGD F Q+L V
Sbjct:  2168 NSYSYGASQRSALSMDPSNAEGQVSLPLTADAQLASAASTT--PVARRHLGDAFDQRLTV 2225

Query:   338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVV 397
             + + FVTT DS+F+ ACG+ D SFR+  TD+ R+ Q ++GH G               VV
Sbjct:  2226 QCSNFVTTTDSKFIFACGYPDYSFRIVDTDSGRVRQAVYGH-G--------------DVV 2270

Query:   398 TCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGET----DTPTPRATLTGHEQP 453
             TC++RSE ++ +DC++ +GS DCTV+LWHWN  T  I GE     + P+PR+ LTGHE  
Sbjct:  2271 TCIARSETSLFSDCYVVTGSMDCTVVLWHWNGTTGFIAGEYNQPGEVPSPRSILTGHEAS 2330

Query:   454 VTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE 513
             ++++ +SAE GLVVSG + G +L+HTT  DLLR +    G      + MSRE +++  ++
Sbjct:  2331 ISALCVSAEHGLVVSGCEDGVILIHTTSSDLLRRI---RGHGIVTQLSMSRECILLSLFD 2387

Query:   514 RGHIAAFTMNGNRLRHESHNDNLQ 537
                +  ++    +L     +D ++
Sbjct:  2388 SKRMVTYSATAKKLDEVLVDDKIE 2411

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040028 "regulation of vulval development" evidence=IGI

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

GO:0045176 "apical protein localization" evidence=IMP

GO:0045807 "positive regulation of endocytosis" evidence=IMP

GO:0016197 "endosomal transport" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|B7Z2H9 NBEA "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 513 (185.6 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 104/231 (45%), Positives = 143/231 (61%)

Query:   309 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN 368
             PI   P   NN+ V KR + D   Q +++  +CFV T D+R++L CGFWD SFRV+ST+ 
Sbjct:   443 PIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTE- 501

Query:   369 ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
                           T ++ QI+FGH+ VVTCL+RSE  I  DC+I SGS D T+LLW+W+
Sbjct:   502 --------------TGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWS 547

Query:   429 ARTQSIVGE----TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL 484
              R   I+G+    +D P PRA LTGH+  V  V++ AELGLV+SG++ GP LVHT  GDL
Sbjct:   548 GR-HHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDL 606

Query:   485 LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDN 535
             LR+L+ P     P  + +S EG  ++ YERG  + F++NG  L     ND+
Sbjct:   607 LRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDS 657

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

UNIPROTKB|E1BND6 Bt.111067 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 499 (180.7 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
 Identities = 99/232 (42%), Positives = 142/232 (61%)

Query:   309 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN 368
             P+   P   +N  + +R + D   Q ++V   CFV T D+R++L CGFWD SFRV+STD 
Sbjct:  2490 PVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILLCGFWDKSFRVYSTD- 2548

Query:   369 ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
                           T +++Q++FGH+ VVTCL+RSE  I  +C+I SGS D T+LLW+WN
Sbjct:  2549 --------------TGKLIQVVFGHWDVVTCLTRSESYIGGNCYILSGSRDATLLLWYWN 2594

Query:   429 ARTQSI---VGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLL 485
              ++  I    G+ +T TPRA LTGH+  +T  A+ AELGLV+SGS+ GP L+H+  GDLL
Sbjct:  2595 GKSSGIGDNPGKGETATPRAILTGHDYEITCAAVCAELGLVLSGSKEGPCLIHSMNGDLL 2654

Query:   486 RSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQ 537
             R+L+ P     P+ +  SREG  V+ YE G    F++NG        +DN++
Sbjct:  2655 RTLEGPENCLKPKLIQASREGHCVIFYENGSFCTFSVNGKLQATMETDDNIR 2706

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)]

 Score = 513 (185.6 bits), Expect = 1.7e-81, Sum P(2) = 1.7e-81
 Identities = 104/231 (45%), Positives = 143/231 (61%)

Query:   309 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN 368
             PI   P   NN+ V KR + D   Q +++  +CFV T D+R++L CGFWD SFRV+ST+ 
Sbjct:  2640 PIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTE- 2698

Query:   369 ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
                           T ++ QI+FGH+ VVTCL+RSE  I  DC+I SGS D T+LLW+W+
Sbjct:  2699 --------------TGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWS 2744

Query:   429 ARTQSIVGE----TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL 484
              R   I+G+    +D P PRA LTGH+  V  V++ AELGLV+SG++ GP LVHT  GDL
Sbjct:  2745 GR-HHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDL 2803

Query:   485 LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDN 535
             LR+L+ P     P  + +S EG  ++ YERG  + F++NG  L     ND+
Sbjct:  2804 LRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDS 2854

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006605 "protein targeting" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=NAS

GO:0008104 "protein localization" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=NAS

GO:0051018 "protein kinase A binding" evidence=NAS

UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)]

 Score = 496 (179.7 bits), Expect = 2.1e-81, Sum P(2) = 2.1e-81
 Identities = 101/232 (43%), Positives = 141/232 (60%)

Query:   309 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN 368
             P+   P   +N  + +R + D   Q ++V   CFV T D+R++L CGFWD SFRV+STD 
Sbjct:  2568 PVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTD- 2626

Query:   369 ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
                           T R++Q++FGH+ VVTCL+RSE  I  +C+I SGS D T+LLW+WN
Sbjct:  2627 --------------TGRLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWN 2672

Query:   429 ARTQSIVGE---TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLL 485
              +   I G+   ++T  PRA LTGH+  VT  A+ AELGLV+SGSQ GP L+H+  GDLL
Sbjct:  2673 GKCSGI-GDNPGSETAAPRAILTGHDYEVTCAAVCAELGLVLSGSQEGPCLIHSMNGDLL 2731

Query:   486 RSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQ 537
             R+L+ P     P+ +  SREG  V+ YE G    F++NG        +DN++
Sbjct:  2732 RTLEGPENCLKPKLIQASREGHCVIFYENGLFCTFSVNGKLQATMETDDNIR 2783

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1MF64 NBEA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 513 (185.6 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
 Identities = 104/231 (45%), Positives = 143/231 (61%)

Query:   309 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN 368
             PI   P   NN+ V KR + D   Q +++  +CFV T D+R++L CGFWD SFRV+ST+ 
Sbjct:  2513 PIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTE- 2571

Query:   369 ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
                           T ++ QI+FGH+ VVTCL+RSE  I  DC+I SGS D T+LLW+W+
Sbjct:  2572 --------------TGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWS 2617

Query:   429 ARTQSIVGE----TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL 484
              R   I+G+    +D P PRA LTGH+  V  V++ AELGLV+SG++ GP LVHT  GDL
Sbjct:  2618 GR-HHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDL 2676

Query:   485 LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDN 535
             LR+L+ P     P  + +S EG  ++ YERG  + F++NG  L     ND+
Sbjct:  2677 LRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDS 2727

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

UNIPROTKB|Q8NFP9 NBEA "Neurobeachin" [Homo sapiens (taxid:9606)]

 Score = 513 (185.6 bits), Expect = 4.6e-81, Sum P(2) = 4.6e-81
 Identities = 104/231 (45%), Positives = 143/231 (61%)

Query:   309 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN 368
             PI   P   NN+ V KR + D   Q +++  +CFV T D+R++L CGFWD SFRV+ST+ 
Sbjct:  2650 PIEMDPLIANNSGVNKRQITDLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTE- 2708

Query:   369 ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
                           T ++ QI+FGH+ VVTCL+RSE  I  DC+I SGS D T+LLW+W+
Sbjct:  2709 --------------TGKLTQIVFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWS 2754

Query:   429 ARTQSIVGE----TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL 484
              R   I+G+    +D P PRA LTGH+  V  V++ AELGLV+SG++ GP LVHT  GDL
Sbjct:  2755 GR-HHIIGDNPNSSDYPAPRAVLTGHDHEVVCVSVCAELGLVISGAKEGPCLVHTITGDL 2813

Query:   485 LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDN 535
             LR+L+ P     P  + +S EG  ++ YERG  + F++NG  L     ND+
Sbjct:  2814 LRALEGPENCLFPRLISVSSEGHCIIYYERGRFSNFSINGKLLAQMEINDS 2864

GO:0008104 "protein localization" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W4E2	NBEA_DROME	No assigned EC number	0.6974	0.5518	0.0832	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	540
smart01026	280	smart01026, Beach, Beige/BEACH domain	1e-44
cd06071	275	cd06071, Beach, BEACH (Beige and Chediak-Higashi)	2e-39
pfam02138	274	pfam02138, Beach, Beige/BEACH domain	1e-38
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain

 Score =  158 bits (402), Expect = 1e-44
 Identities = 55/97 (56%), Positives = 70/97 (72%)

Query: 15  FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
           F Y + +  + GR+YNDL QYPVFPWVL +Y S+ LDLS  + +RDLSKPIGALNP R+ 
Sbjct: 12  FEYLMHLNTLAGRSYNDLTQYPVFPWVLADYTSETLDLSNPSTFRDLSKPIGALNPERLE 71

Query: 75  YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVP 111
           +F ERY   E  +I PFHYGTHYS+   VL +L+R+ 
Sbjct: 72  FFYERYEELEDPDIPPFHYGTHYSSAGIVLYYLIRLE 108

The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Length = 280

>gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

 Score =  144 bits (365), Expect = 2e-39
 Identities = 50/97 (51%), Positives = 70/97 (72%)

Query: 15  FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
           F Y + +  + GR++NDL+QYP+FPWV+++Y S+ELDL+  + YRDLSKPIGALN  R+ 
Sbjct: 12  FEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQ 71

Query: 75  YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVP 111
             +ERY S   ++  PFHYG+HYS    VL +LVR+ 
Sbjct: 72  LLKERYESDSDDSDPPFHYGSHYSNPAIVLYYLVRLE 108

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Length = 275

>gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain

 Score =  142 bits (360), Expect = 1e-38
 Identities = 51/97 (52%), Positives = 71/97 (73%), Gaps = 1/97 (1%)

Query: 15  FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
           F Y +++  + GR++NDL+QYPVFPWVL +Y S+ LDL+  + YRDLSKPIGALN  R+ 
Sbjct: 12  FEYLMLLNTLAGRSFNDLSQYPVFPWVLADYTSETLDLNDPSTYRDLSKPIGALNEERLK 71

Query: 75  YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVP 111
            F+ERY   + E   PFHYG+HYS+   VL++L+R+ 
Sbjct: 72  KFKERYEELD-EVGPPFHYGSHYSSPGSVLHYLIRLE 107

Length = 274

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 33/135 (24%)

Query: 339 HNCFVTTVD---SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG 395
           H  +V++V       +L+    D + +V+  +               T + +  + GH  
Sbjct: 92  HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---------------TGKCLTTLRGHTD 136

Query: 396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVT 455
            V  ++ S        F+AS S D T+ LW           +  T    ATLTGH   V 
Sbjct: 137 WVNSVAFSPDGT----FVASSSQDGTIKLW-----------DLRTGKCVATLTGHTGEVN 181

Query: 456 SVAISAELGLVVSGS 470
           SVA S +   ++S S
Sbjct: 182 SVAFSPDGEKLLSSS 196

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 35/163 (21%), Positives = 56/163 (34%), Gaps = 45/163 (27%)

Query: 339 HNCFVTTVD---SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS----------- 384
           H  +V +V        +A    D + +++     + V  + GH G V S           
Sbjct: 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL 193

Query: 385 ----------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
                           + +  + GH   V  ++ S         +ASGS D T+ +W   
Sbjct: 194 SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY----LLASGSEDGTIRVWDL- 248

Query: 429 ARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ 471
                      T     TL+GH   VTS+A S +   + SGS 
Sbjct: 249 ----------RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 32/130 (24%)

Query: 343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR 402
           V        LA G  D + R++  +    V+ + GH   V+S                  
Sbjct: 57  VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS------------------ 98

Query: 403 SECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA 461
                + D   ++S S D T+ +W           + +T     TL GH   V SVA S 
Sbjct: 99  --VAFSPDGRILSSSSRDKTIKVW-----------DVETGKCLTTLRGHTDWVNSVAFSP 145

Query: 462 ELGLVVSGSQ 471
           +   V S SQ
Sbjct: 146 DGTFVASSSQ 155

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 38/177 (21%)

Query: 339 HNCFVTTV----DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY 394
           H   VT V    D + L      D + +V+  +   +++ + GH G V            
Sbjct: 8   HTGGVTCVAFSPDGKLLATGS-GDGTIKVWDLETGELLRTLKGHTGPVRD---------- 56

Query: 395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPV 454
             V   +          ++ASGS+D T+ LW           + +T     TLTGH   V
Sbjct: 57  --VAASADGT-------YLASGSSDKTIRLW-----------DLETGECVRTLTGHTSYV 96

Query: 455 TSVAISAELGLVVSGSQLGPVLVHTTF-GDLLRSLDPPSGFASPESVVMSREGVIVV 510
           +SVA S +  ++ S S+   + V     G  L +L   + + +  SV  S +G  V 
Sbjct: 97  SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN--SVAFSPDGTFVA 151

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 22/90 (24%)

Query: 339 HNCFVTTVD---SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG 395
           H   V +V      +LLA G  D + RV+       VQ + GH    T+           
Sbjct: 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH----TNS---------- 263

Query: 396 VVTCLSRSECNITADCFIASGSADCTVLLW 425
            VT L+ S         +ASGSAD T+ +W
Sbjct: 264 -VTSLAWSPDG----KRLASGSADGTIRIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 40/185 (21%), Positives = 64/185 (34%), Gaps = 46/185 (24%)

Query: 347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS---------------------- 384
           D + L +    D + +++     + +  + GH   V+S                      
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225

Query: 385 -------RIVQIIFGHY-GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVG 436
                   +   + GH   VV+  S           +ASGS+D T+ LW   + +  +  
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPD------GSLLASGSSDGTIRLWDLRSSSSLL-- 277

Query: 437 ETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFAS 496
                    TL+GH   V SVA S +  L+ SGS  G V +       L S     G   
Sbjct: 278 --------RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329

Query: 497 PESVV 501
           P S +
Sbjct: 330 PVSSL 334

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	540
cd06071	275	Beach BEACH (Beige and Chediak-Higashi) domains, i	100.0
PF02138	270	Beach: Beige/BEACH domain; InterPro: IPR000409 The	100.0
KOG1787|consensus	1126		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		99.96
KOG0272|consensus	459		99.96
KOG0315|consensus	311		99.96
KOG0286|consensus	343		99.96
KOG0271|consensus	480		99.96
KOG0279|consensus	315		99.95
KOG1786|consensus	1081		99.95
KOG0263|consensus	707		99.95
KOG0295|consensus	406		99.95
KOG0273|consensus	524		99.94
KOG0279|consensus	315		99.93
KOG0263|consensus	707		99.92
KOG0319|consensus	775		99.92
KOG0266|consensus	456		99.91
KOG0265|consensus	338		99.91
KOG0285|consensus	460		99.91
KOG0645|consensus	312		99.9
KOG0316|consensus	307		99.9
KOG0295|consensus	406		99.89
KOG1786|consensus	1081		99.89
KOG0319|consensus	775		99.89
KOG0286|consensus	343		99.89
KOG0284|consensus	464		99.89
KOG0291|consensus	893		99.89
KOG0266|consensus	456		99.88
KOG0273|consensus	524		99.88
KOG0284|consensus	464		99.88
KOG0318|consensus	603		99.88
KOG0281|consensus	499		99.87
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.87
KOG0276|consensus	794		99.87
KOG0291|consensus	893		99.87
KOG0285|consensus	460		99.87
KOG0275|consensus	508		99.87
PTZ00421	493	coronin; Provisional	99.87
PTZ00421	493	coronin; Provisional	99.86
KOG0300|consensus	481		99.86
KOG0293|consensus	519		99.86
KOG0265|consensus	338		99.86
KOG0306|consensus	888		99.85
KOG0772|consensus	641		99.85
KOG0281|consensus	499		99.85
KOG0292|consensus	1202		99.84
KOG0276|consensus	794		99.84
KOG0318|consensus	603		99.84
KOG0282|consensus	503		99.84
KOG0313|consensus	423		99.84
KOG0296|consensus	399		99.84
PTZ00420	568	coronin; Provisional	99.83
KOG0315|consensus	311		99.83
KOG0275|consensus	508		99.83
KOG0645|consensus	312		99.83
KOG0310|consensus	487		99.83
KOG0301|consensus	745		99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.83
KOG0283|consensus	712		99.83
KOG0640|consensus	430		99.82
PTZ00420	568	coronin; Provisional	99.82
PLN00181	793	protein SPA1-RELATED; Provisional	99.82
KOG0292|consensus	1202		99.81
KOG1407|consensus	313		99.81
KOG0277|consensus	311		99.81
KOG1332|consensus	299		99.8
KOG0264|consensus	422		99.8
KOG0274|consensus	537		99.8
KOG1446|consensus	311		99.8
KOG2096|consensus	420		99.8
KOG0299|consensus	479		99.8
KOG0274|consensus	537		99.8
KOG0269|consensus	839		99.79
KOG1274|consensus	933		99.79
KOG0283|consensus	712		99.79
KOG0278|consensus	334		99.78
KOG0308|consensus	735		99.78
KOG0973|consensus	942		99.77
KOG0647|consensus	347		99.77
KOG0316|consensus	307		99.77
KOG0310|consensus	487		99.77
KOG0313|consensus	423		99.77
KOG0288|consensus	459		99.76
KOG0772|consensus	641		99.76
KOG0643|consensus	327		99.75
KOG0267|consensus	825		99.75
KOG0306|consensus	888		99.75
KOG1408|consensus	1080		99.75
KOG0289|consensus	506		99.74
KOG0641|consensus	350		99.74
KOG0288|consensus	459		99.74
KOG0296|consensus	399		99.74
KOG0643|consensus	327		99.73
KOG0646|consensus	476		99.73
KOG0277|consensus	311		99.73
KOG0305|consensus	484		99.73
KOG0300|consensus	481		99.73
KOG0294|consensus	362		99.72
KOG1407|consensus	313		99.72
KOG0268|consensus	433		99.72
KOG0973|consensus	942		99.71
KOG0305|consensus	484		99.71
KOG0640|consensus	430		99.71
KOG0302|consensus	440		99.71
KOG0264|consensus	422		99.71
KOG0647|consensus	347		99.7
KOG0267|consensus	825		99.7
KOG0282|consensus	503		99.69
KOG0308|consensus	735		99.68
KOG0639|consensus	705		99.68
KOG0301|consensus	745		99.68
KOG4283|consensus	397		99.67
KOG4283|consensus	397		99.67
KOG0293|consensus	519		99.67
KOG0299|consensus	479		99.67
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.66
KOG0302|consensus	440		99.66
KOG0641|consensus	350		99.66
KOG0270|consensus	463		99.66
KOG1539|consensus	910		99.66
KOG1036|consensus	323		99.66
KOG0294|consensus	362		99.66
KOG2445|consensus	361		99.65
KOG0289|consensus	506		99.65
KOG1446|consensus	311		99.64
KOG0303|consensus	472		99.64
KOG2055|consensus	514		99.63
KOG0269|consensus	839		99.63
KOG0278|consensus	334		99.63
KOG2919|consensus	406		99.61
KOG2048|consensus	691		99.61
KOG0646|consensus	476		99.6
KOG4378|consensus	673		99.56
KOG0639|consensus	705		99.55
KOG0321|consensus	720		99.54
KOG2096|consensus	420		99.54
KOG2055|consensus	514		99.53
KOG1332|consensus	299		99.52
KOG2106|consensus	626		99.52
KOG0270|consensus	463		99.52
KOG1063|consensus	764		99.52
KOG1273|consensus	405		99.5
KOG2106|consensus	626		99.5
KOG2919|consensus	406		99.49
KOG4328|consensus	498		99.49
KOG0650|consensus	733		99.48
KOG1445|consensus	1012		99.47
KOG1009|consensus	434		99.47
KOG0307|consensus	1049		99.46
KOG1539|consensus	910		99.46
KOG1036|consensus	323		99.45
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.45
KOG0268|consensus	433		99.45
KOG1274|consensus	933		99.45
KOG0642|consensus	577		99.44
KOG0303|consensus	472		99.43
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.43
KOG4378|consensus	673		99.42
KOG2048|consensus	691		99.41
KOG2110|consensus	391		99.41
KOG1007|consensus	370		99.41
KOG0322|consensus	323		99.4
KOG1034|consensus	385		99.4
KOG1063|consensus	764		99.39
KOG1009|consensus	434		99.38
PRK01742	429	tolB translocation protein TolB; Provisional	99.38
KOG0642|consensus	577		99.38
KOG1517|consensus	1387		99.37
KOG1408|consensus	1080		99.37
KOG0649|consensus	325		99.35
KOG1007|consensus	370		99.35
KOG4328|consensus	498		99.35
KOG0321|consensus	720		99.34
COG2319	466	FOG: WD40 repeat [General function prediction only	99.33
KOG1538|consensus	1081		99.33
KOG1034|consensus	385		99.32
KOG2445|consensus	361		99.31
KOG1538|consensus	1081		99.3
KOG2394|consensus	636		99.3
KOG0771|consensus	398		99.29
KOG1273|consensus	405		99.29
KOG1524|consensus	737		99.29
KOG1524|consensus	737		99.28
KOG1587|consensus	555		99.28
KOG1445|consensus	1012		99.27
KOG0644|consensus	1113		99.26
KOG2111|consensus	346		99.23
PRK11028	330	6-phosphogluconolactonase; Provisional	99.22
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.22
KOG1523|consensus	361		99.22
KOG1517|consensus	1387		99.21
KOG1188|consensus	376		99.19
PRK03629	429	tolB translocation protein TolB; Provisional	99.19
KOG0290|consensus	364		99.19
PRK04922	433	tolB translocation protein TolB; Provisional	99.19
PRK11028	330	6-phosphogluconolactonase; Provisional	99.18
KOG0649|consensus	325		99.17
KOG2394|consensus	636		99.16
PRK05137	435	tolB translocation protein TolB; Provisional	99.15
KOG1188|consensus	376		99.14
PRK01742	429	tolB translocation protein TolB; Provisional	99.13
PRK02889	427	tolB translocation protein TolB; Provisional	99.13
COG2319	466	FOG: WD40 repeat [General function prediction only	99.13
KOG0650|consensus	733		99.12
KOG1523|consensus	361		99.1
KOG0974|consensus	967		99.09
KOG0307|consensus	1049		99.09
KOG1334|consensus	559		99.09
KOG0290|consensus	364		99.07
KOG2321|consensus	703		99.07
KOG4547|consensus	541		99.06
KOG1963|consensus	792		99.04
KOG0644|consensus	1113		99.03
KOG1310|consensus	758		99.02
KOG2139|consensus	445		99.01
KOG1787|consensus	1126		98.99
KOG3881|consensus	412		98.96
KOG2111|consensus	346		98.96
KOG1310|consensus	758		98.96
PRK05137	435	tolB translocation protein TolB; Provisional	98.94
KOG1587|consensus	555		98.94
PRK02889	427	tolB translocation protein TolB; Provisional	98.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.93
KOG0322|consensus	323		98.9
KOG0771|consensus	398		98.9
PRK01029	428	tolB translocation protein TolB; Provisional	98.9
KOG4547|consensus	541		98.88
KOG1272|consensus	545		98.86
PRK03629	429	tolB translocation protein TolB; Provisional	98.84
KOG4227|consensus	609		98.82
PRK04922	433	tolB translocation protein TolB; Provisional	98.81
KOG2139|consensus	445		98.81
PRK04792	448	tolB translocation protein TolB; Provisional	98.8
KOG4227|consensus	609		98.79
KOG4497|consensus	447		98.78
KOG2110|consensus	391		98.78
KOG1240|consensus	1431		98.77
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.76
PRK00178	430	tolB translocation protein TolB; Provisional	98.76
KOG1240|consensus	1431		98.7
KOG1963|consensus	792		98.69
KOG3881|consensus	412		98.66
KOG2041|consensus	1189		98.66
KOG2321|consensus	703		98.64
KOG0974|consensus	967		98.6
KOG1334|consensus	559		98.58
KOG1272|consensus	545		98.58
PRK00178	430	tolB translocation protein TolB; Provisional	98.57
PRK04792	448	tolB translocation protein TolB; Provisional	98.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.51
KOG3914|consensus	390		98.51
KOG1409|consensus	404		98.48
PRK01029	428	tolB translocation protein TolB; Provisional	98.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.46
KOG1354|consensus	433		98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.42
KOG4497|consensus	447		98.41
KOG3914|consensus	390		98.4
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.38
KOG2315|consensus	566		98.33
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.29
KOG1064|consensus	2439		98.27
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.25
KOG0280|consensus	339		98.19
PRK04043	419	tolB translocation protein TolB; Provisional	98.16
KOG4532|consensus	344		98.13
KOG2695|consensus	425		98.12
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.11
KOG2695|consensus	425		98.09
KOG1354|consensus	433		98.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.08
KOG1064|consensus	2439		98.05
KOG0882|consensus	558		98.03
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.99
KOG4190|consensus	1034		97.97
KOG4714|consensus	319		97.96
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.94
KOG2041|consensus	1189		97.88
KOG2315|consensus	566		97.87
PRK04043	419	tolB translocation protein TolB; Provisional	97.87
KOG0280|consensus	339		97.86
KOG1275|consensus	1118		97.85
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.8
KOG2114|consensus	933		97.79
COG4946	668	Uncharacterized protein related to the periplasmic	97.78
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.78
COG4946	668	Uncharacterized protein related to the periplasmic	97.78
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.75
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.72
KOG4190|consensus	1034		97.72
KOG1409|consensus	404		97.68
KOG1912|consensus	1062		97.68
KOG0309|consensus	1081		97.61
KOG2066|consensus	846		97.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.6
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.5
KOG4532|consensus	344		97.5
KOG2314|consensus	698		97.5
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.48
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.45
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.38
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.36
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.32
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.29
KOG4714|consensus	319		97.29
KOG2066|consensus	846		97.25
KOG2114|consensus	933		97.19
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.12
KOG0309|consensus	1081		97.0
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.92
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.91
KOG2395|consensus	644		96.91
KOG1645|consensus	463		96.86
KOG1008|consensus	783		96.84
KOG1832|consensus	1516		96.74
KOG4640|consensus	665		96.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.73
KOG1920|consensus	1265		96.71
KOG1832|consensus	1516		96.69
KOG4649|consensus	354		96.66
KOG3621|consensus	726		96.66
KOG0882|consensus	558		96.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.62
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.56
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.55
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.52
KOG4649|consensus	354		96.5
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.5
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	96.44
KOG3617|consensus	1416		96.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.12
KOG4640|consensus	665		96.11
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.07
KOG3621|consensus	726		96.03
PRK02888	635	nitrous-oxide reductase; Validated	96.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.01
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.99
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.99
KOG2314|consensus	698		95.98
KOG1920|consensus	1265		95.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.92
PRK02888	635	nitrous-oxide reductase; Validated	95.74
COG3391	381	Uncharacterized conserved protein [Function unknow	95.65
KOG1645|consensus	463		95.33
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.31
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.3
PRK13616	591	lipoprotein LpqB; Provisional	95.3
KOG2395|consensus	644		95.16
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.15
KOG3617|consensus	1416		95.08
KOG1008|consensus	783		95.06
COG3391	381	Uncharacterized conserved protein [Function unknow	94.91
KOG1912|consensus	1062		94.89
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.85
KOG2079|consensus	1206		94.81
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	94.52
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.52
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.43
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.28
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.98
KOG3630|consensus	1405		93.95
KOG1275|consensus	1118		93.81
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.81
KOG4499|consensus	310		93.71
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.3
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.83
KOG2079|consensus	1206		92.58
PRK13616	591	lipoprotein LpqB; Provisional	92.57
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.57
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.44
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.42
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.22
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	91.91
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.52
COG5167	776	VID27 Protein involved in vacuole import and degra	91.18
KOG1916|consensus	1283		91.05
KOG2444|consensus	238		91.04
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.17
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	89.81
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	89.26
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	89.01
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	88.7
KOG1897|consensus	1096		88.6
KOG2444|consensus	238		88.29
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	86.98
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.89
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	85.45
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	85.08
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.48
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	83.7
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	83.49
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.45
KOG3630|consensus	1405		83.29
PRK13684	334	Ycf48-like protein; Provisional	81.92
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	81.36
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.1
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.63

>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

Probab=100.00  E-value=1.5e-65  Score=496.21  Aligned_cols=209  Identities=31%  Similarity=0.513  Sum_probs=180.8

Q ss_pred             cccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccCcccccChhhHHHHHHHHhhc
Q psy1242           4 NDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSW   83 (540)
Q Consensus         4 ~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~~~~~~~~~~~~~~~~~~~~~   83 (540)
                      |++|++|+||||||||+||.+|||||||++|||||||||+||+|++|||+++..||||+|||||||++|++.++++|+++
T Consensus         1 T~~W~~g~iSNfeYL~~LN~~sGRSf~D~sqYPIfPWvi~dy~s~~ldl~~~~~~RDLskpigal~~~r~~~~~~~~~~~   80 (275)
T cd06071           1 TKKWQNGEISNFEYLMYLNTLAGRSFNDLSQYPIFPWVISDYTSEELDLNDPSTYRDLSKPIGALNKERLQLLKERYESD   80 (275)
T ss_pred             CchhhcCCccHHHHHHHHHHHhCCCCCCcccCCccCeeecCCCCcccccCCcccccCCCCchhhcCHHHHHHHHHHHhhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCCCCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--ccccccccC----------------------
Q psy1242          84 EHENIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYAE----------------------  128 (540)
Q Consensus        84 ~~~~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~~----------------------  128 (540)
                      .....++||||+|||++++|++||+|+| |         |+|| |+|  +||+.+|++                      
T Consensus        81 ~~~~~~~~~y~shyS~~~~V~~yLvR~ePft~~~~~lq~g~fd~~~RlF~si~~~~~~~~~~~~d~~ELIPEFf~~Pe~f  160 (275)
T cd06071          81 SDDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWRSASENPSDVKELIPEFYYLPEFF  160 (275)
T ss_pred             cccCCCCCCCCCCCCCHHHHHHHHhHcCCccHHHHHHhcCCcCCcccchhhHHHHHHHHHccCCCcccCCchHhcCHHHH
Confidence            7778899999999999999999999999 8         9999 999  899999986                      


Q ss_pred             ----------CCCCCCCCCceecCCccCCcCccCCCccchhhhcCC-------------Cccc------cCCCCCCCCCC
Q psy1242         129 ----------TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-------------FSQK------LRVRPITTPLY  179 (540)
Q Consensus       129 ----------~~~~~~~~~~v~lp~w~~~~~~f~~~~~~r~~Le~~-------------fg~~------~~~~~~~~~~~  179 (540)
                                ++|+.++|  |+||+||++|++||  ++||+||||+             ||+|      ++..|++.|..
T Consensus       161 ~N~n~~~lg~~~g~~~~D--V~LP~Wa~s~~~FV--~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~  236 (275)
T cd06071         161 LNINKFDFGKQDGEKVND--VELPPWAKSPEEFI--RKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLT  236 (275)
T ss_pred             hCCCcccccccCCCcccc--eecCCCcCCHHHHH--HHHHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcCCCcccc
Confidence                      35678999  99999999999999  9999999999             5665      34556666665


Q ss_pred             cchhhhhhhhcccccchhhhhhhhhhccccccccccccCcc-cccccC
Q psy1242         180 PRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASEC-SLRIMS  226 (540)
Q Consensus       180 ~~~a~~~~~i~~~~y~~~~~~l~~~~~~~~~~~fGQ~P~Q~-~~~~~~  226 (540)
                      |...|....+          +.+...-++++.+|||+|.|| ..||+.
T Consensus       237 Y~~~~~~~~~----------~~~~~~~~~~~~~~Gq~P~QLF~~pHP~  274 (275)
T cd06071         237 YEGSVDLDSI----------DVEREAIEAQINNFGQTPVQLFTKPHPK  274 (275)
T ss_pred             cCCccccchh----------hHHHHHHHHHHHhcCCCcchhccCCCCC
Confidence            5444211110          123334456678899999998 466653

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.

>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling

Probab=100.00  E-value=1.6e-63  Score=483.07  Aligned_cols=206  Identities=33%  Similarity=0.558  Sum_probs=132.9

Q ss_pred             cccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccCcccccChhhHHHHHHHHhhc
Q psy1242           4 NDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYNSW   83 (540)
Q Consensus         4 ~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~~~~~~~~~~~~~~~~~~~~~   83 (540)
                      |++|++|+||||||||.||.+|||||||++||||||||++||++++|||+++..||||+|||||+|++|+++++++|+++
T Consensus         1 T~~W~~g~iSNfeYL~~LN~~aGRSf~D~sqYPIFPWv~~dy~s~~ldl~~~~~~RdLskPiga~~~~r~~~~~~~~~~~   80 (270)
T PF02138_consen    1 TEKWQNGEISNFEYLMYLNILAGRSFNDLSQYPIFPWVISDYDSEELDLNDPSNYRDLSKPIGAQNEERLEKLKERYEEM   80 (270)
T ss_dssp             HHHHHTTSS-HHHHHHHHHHHCT--TT-GGG---B---B---SSSS--TT-GGGB--TTS-HHHCSHHHHHHHHHHHHC-
T ss_pred             CcchhcCCCcHHHHHHHHhHHhccCCCCCccCccccchhccCCccccccCCccccccccccccccCHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             cCCCCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--ccccccccC----------------------
Q psy1242          84 EHENIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYAE----------------------  128 (540)
Q Consensus        84 ~~~~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~~----------------------  128 (540)
                      +. ..++||||+|||++++|++||+|+| |         |+|| ++|  .||+++|++                      
T Consensus        81 ~~-~~~~~~y~s~ys~~~~v~~~L~R~ePft~l~~~lq~g~fD~~~r~F~SI~~~~~~~~~~~~d~~EliPEff~~Pe~f  159 (270)
T PF02138_consen   81 EE-FEPPFHYGSHYSSPGTVLYYLVRLEPFTSLHIDLQSGKFDVPDRLFSSIEDTWNSVTENMNDVKELIPEFFYLPEFF  159 (270)
T ss_dssp             -S-SS---SBSS-SS-HHHHHHHTTTSTTHHHHHHHCCTTS---CCCSS-BHHHHHHHHHH-TT----B-GGGGT-GGGG
T ss_pred             hc-cCCCccccCCCCCcchhhhhhcccChHHHHHHHHhccccCCchHHHHHHHHHHHHhhcCCccccccChhhhCCHHHh
Confidence            43 3489999999999999999999999 8         8999 999  899999986                      


Q ss_pred             --------CCCCCCCCCceecCCccCCcCccCCCccchhhhcCC-------------Cccc------cCCCCCCCCCCcc
Q psy1242         129 --------TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-------------FSQK------LRVRPITTPLYPR  181 (540)
Q Consensus       129 --------~~~~~~~~~~v~lp~w~~~~~~f~~~~~~r~~Le~~-------------fg~~------~~~~~~~~~~~~~  181 (540)
                              ..|+.++|  |+||+||++|++||  ++||+||||+             ||+|      ++.+|++.|..|.
T Consensus       160 ~N~n~~~~g~~~~~~d--V~LP~Wa~s~~~FV--~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~  235 (270)
T PF02138_consen  160 KNINNFDLGKGEDVDD--VELPPWAKSPFEFV--YKHRKALESDYVSQNLHHWIDLIFGYKQRGKEAVEAKNVFHPLTYE  235 (270)
T ss_dssp             S-TT-SS--BS-B-SS---B--TT-SSHHHHH--HHHHHHHCSHHHHTTHHHHHHHHTSCCCSCHHHHHTT--B-CCCST
T ss_pred             cccccccccCCCccce--eecCCccchHHHHH--HHHHHHHhhhHHHhhhhHHHHHhhCcccccHHHHHHhhcccccCCC
Confidence                    11567889  99999999999999  9999999998             8887      5566777777765


Q ss_pred             hhhhhhhhcccccchhhhhhhhhhccccccccccccCccc-ccccC
Q psy1242         182 DIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECS-LRIMS  226 (540)
Q Consensus       182 ~a~~~~~i~~~~y~~~~~~l~~~~~~~~~~~fGQ~P~Q~~-~~~~~  226 (540)
                      ..|+++            +.+....+.+.++|||+|.||+ +||+.
T Consensus       236 ~~~~~~------------~~~~~~~~~~~~~~Gq~P~QLF~~pHP~  269 (270)
T PF02138_consen  236 DSWIED------------PMEREAIEAQLKNFGQVPIQLFTKPHPK  269 (270)
T ss_dssp             TS---S------------HHHHHHHHHHHHHC--------SS----
T ss_pred             ccccCC------------HHHHHHHHHHHHhcCCChHHHhCCCCCC
Confidence            553100            1223334555677999999984 66654

The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.

>KOG1787|consensus

Probab=100.00  E-value=1.7e-55  Score=485.92  Aligned_cols=463  Identities=35%  Similarity=0.485  Sum_probs=349.4

Q ss_pred             cccccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccCcccccChhhHHHHHHHHh
Q psy1242           2 TYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYN   81 (540)
Q Consensus         2 ~~~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~~~~~~~~~~~~~~~~~~~   81 (540)
                      +.|.+|+.|+||||+|||+||+.|||+|||++||||||||++||.++++|++.+++||||+||||++|++|...|.+||+
T Consensus       470 ~~t~~w~~~~~s~~~~l~~l~t~agrsyndl~qypvfpwvl~dy~s~~ld~s~~~~frdlsKpigaln~~~~~~f~dry~  549 (1126)
T KOG1787|consen  470 GITQEWQAREISNFEVLMQLNTSAGRSYNDLTQYPVFPWVLRDYSSETLDLSKLSTFRDLSKPIGALNPKRAYLFRDRYE  549 (1126)
T ss_pred             CccHHHHhhccccHHHHHHHHhccCcccCccccCCCCCeeeecccchhhhcccchhHHhhcCcccCCCcccchhHhhhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--ccccccccC--------------------
Q psy1242          82 SWEHENIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYAE--------------------  128 (540)
Q Consensus        82 ~~~~~~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~~--------------------  128 (540)
                      +++|+.++.|||++|||+++.|++||+|+| |         |+|| +||  +|+..+|++                    
T Consensus       550 s~~D~~i~~~~~~thys~~~~~l~~l~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r~~l~d~sdvkelipeffy~p~  629 (1126)
T KOG1787|consen  550 SFEDQAIPSFHYGTHYSSAANVLAYLLRVEPFTSLHLQLQDGKFDHADRAFSSVASSWRRCLRDTSDVKELIPEFFYFPE  629 (1126)
T ss_pred             ccccccccccccccccccccceeeeeeecCccccccccccccccccchhhHHHHHHHHhhhccchhhHHHhhhHHHHHHH
Confidence            999999999999999999999999999999 8         9999 999  999999987                    


Q ss_pred             -------------CCCCCCCCCceecCCccCCcCccCCCccchhhhcCCCccc---cCCCCCCCCCCcchhhhhhhhccc
Q psy1242         129 -------------TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK---LRVRPITTPLYPRDIWVTISVRSY  192 (540)
Q Consensus       129 -------------~~~~~~~~~~v~lp~w~~~~~~f~~~~~~r~~Le~~fg~~---~~~~~~~~~~~~~~a~~~~~i~~~  192 (540)
                                   .+++++.|  |.||||+++|++|+  ..||++||++|+-.   +.++.|+..++ +-+ -...-.|.
T Consensus       630 ll~~~~~~~lg~~~dg~~vi~--v~lppwa~~pe~f~--~~nr~aLes~fvs~~l~~widlifg~Kq-~g~-ea~~a~nv  703 (1126)
T KOG1787|consen  630 LLVNSNLYNLGVRVDGEPVID--VVLPPWAKSPEDFE--TRNREALESEFVSCQLHQWIDLIFGYKQ-RGP-EAVRAMNV  703 (1126)
T ss_pred             HHhccccccceeecCCcccee--eecccccCCHHHHH--HHHHHHhhccccccccchhHHhhhhHhh-cCH-HHHHhhhh
Confidence                         77899999  99999999999999  99999999997543   66777888887 444 22233467


Q ss_pred             ccchh---hhhhhhhhccccc--------cccccccCccc-ccccC---C--------Cccc-ccccceeEEEecCCCCC
Q psy1242         193 AYDIT---VLSLRWIVDSCWR--------AVSGITASECS-LRIMS---P--------MMFS-TVLDDVCMSLKFPSNSP  248 (540)
Q Consensus       193 ~y~~~---~~~l~~~~~~~~~--------~~fGQ~P~Q~~-~~~~~---p--------~~f~-~~~~~~~~~~~f~~~~~  248 (540)
                      ||+++   +|+++.|.|+..+        ..|||||.|+. .+|+.   +        .+|. ..+.++.+..+++++++
T Consensus       704 f~~~tyeG~v~~~~~~d~~~~~eai~~~i~~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s~s~  783 (1126)
T KOG1787|consen  704 FYYLTYEGAVDLDSITDQVLRTEAIEAQIASFGQTPSQLLQEQHPPRASESKLALPSALVFEDASQLDVGIVLKRPSNSS  783 (1126)
T ss_pred             hccCCccccccccccCChhHHHHHHHHHHhhccccchhhhhhccCCcchhccccccccchhhhhhhhhhhhccccCCCCc
Confidence            88876   7888777776554        57999999963 33321   1        1222 23456677888999999


Q ss_pred             eeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242         249 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  328 (540)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~  328 (540)
                      ..+..++++..+..|++..+....-....+|++..-.........+.............+-....+.  ......++...
T Consensus       784 ~~v~aan~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~r~~~~  861 (1126)
T KOG1787|consen  784 VVVVAANTLFELCQPTVLGVRSLLEFPRNISSPSVVVKRATEALRGARGSHLDQIPLATDEPLQLTA--SNQFVARRLRD  861 (1126)
T ss_pred             ceeecccccccccccceeeeeeeEEeehhccccchhhhhhhHhhccCCccccccccccccchhhhhh--ccceehhhccc
Confidence            9999999999999999888877777777788873211100001110111001011111110001011  23335566666


Q ss_pred             CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         329 DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       329 ~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                      ........+...+++...++......|.++.+-+|+...+++..+..               .+|...|+|++..+....
T Consensus       862 ~~~~~~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~---------------~~d~~vv~~~ar~~~~l~  926 (1126)
T KOG1787|consen  862 DISDQSYLVQLNLFVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSV---------------FRDGDVVTCGARLEQYLA  926 (1126)
T ss_pred             chhheeeeeecceEEEeccCccccccCccccccceEeeehhhhcccc---------------ccccceeeeeeccccccc
Confidence            67777777777777777777767778888888888777777766665               688899999999885554


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCC----CCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGE----TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL  484 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~----~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~  484 (540)
                      .....++++.|++|..|-+. .. ...++    .....+...+.+|.....+....+....+..++.++...+....|-.
T Consensus       927 ~~~~~~s~s~D~tI~~~~~s-~~-~~~g~~~~~~s~~~e~~~lt~~~~~~~~~~~~~~~s~v~~~~~~~~~~i~~~~gl~ 1004 (1126)
T KOG1787|consen  927 ALQYPVSSSEDGTIPLLYWS-HI-SSIGDIVVSGSAPEEFTTLTGQEASGKFSLVDAELSLVISGAKGGLCLIHLVGGLL 1004 (1126)
T ss_pred             ccccccccCCCcceeeeeec-cc-cccccccccccccCccchheecccceeeeecchhhhhhhhhcccccceeeeecchh
Confidence            56778999999999999887 11 11111    12234556777888877777777777778888888877776555544


Q ss_pred             EEEec
Q psy1242         485 LRSLD  489 (540)
Q Consensus       485 ~~~l~  489 (540)
                      ++.+.
T Consensus      1005 l~~~~ 1009 (1126)
T KOG1787|consen 1005 LRLLE 1009 (1126)
T ss_pred             hhccc
Confidence            44433

>KOG0271|consensus

Probab=100.00  E-value=7.3e-32  Score=260.42  Aligned_cols=272  Identities=19%  Similarity=0.242  Sum_probs=216.0

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCe
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPIL  311 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l  311 (540)
                      .|.+.+.+++|+|.+..                 +||+|+|.|+|+||+.+.... ...+|.++|.    +++++||+..
T Consensus       113 GH~e~Vl~~~fsp~g~~-----------------l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVl----cvawsPDgk~  171 (480)
T KOG0271|consen  113 GHGEAVLSVQFSPTGSR-----------------LVTGSGDTTVRLWDLDTETPLFTCKGHKNWVL----CVAWSPDGKK  171 (480)
T ss_pred             CCCCcEEEEEecCCCce-----------------EEecCCCceEEeeccCCCCcceeecCCccEEE----EEEECCCcch
Confidence            45556666666665554                 999999999999999986644 3457888876    6789999999


Q ss_pred             eeccCCCCCC-----ccccccCCCcCcceeeEEEEEEEe-----cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccce
Q psy1242         312 THPTSNNNAP-----VPKRHLGDNFSQKLRVRHNCFVTT-----VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGV  381 (540)
Q Consensus       312 ~~~g~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~s-----pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~  381 (540)
                      +++|+.++..     ....+++..+..+.. .+++++|.     |..+ ++|+++.||+++|||+..+.++..+.+|+..
T Consensus       172 iASG~~dg~I~lwdpktg~~~g~~l~gH~K-~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~  249 (480)
T KOG0271|consen  172 IASGSKDGSIRLWDPKTGQQIGRALRGHKK-WITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTAS  249 (480)
T ss_pred             hhccccCCeEEEecCCCCCcccccccCccc-ceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccc
Confidence            9998655443     223334444432221 25555554     4566 5899999999999999999999999999999


Q ss_pred             eee--------------------------eeEEEeeccCcceEEEEeccCc-----------------------------
Q psy1242         382 VTS--------------------------RIVQIIFGHYGVVTCLSRSECN-----------------------------  406 (540)
Q Consensus       382 v~~--------------------------~~~~~l~~h~~~Vt~l~~sp~~-----------------------------  406 (540)
                      |+|                          .+.++++||...|+.++.+...                             
T Consensus       250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            976                          3667789999999999887200                             


Q ss_pred             ---cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CC
Q psy1242         407 ---ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FG  482 (540)
Q Consensus       407 ---~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g  482 (540)
                         -..++.|++||.|.++.+|+-...          .+|+..+.||...|+.+.||||+++|||+|-|..|++|+. +|
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~----------kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG  399 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKS----------KKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG  399 (480)
T ss_pred             HhhccCcceeEEecCCceEEEeccccc----------ccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence               002346999999999999985432          3688899999999999999999999999999999999976 99


Q ss_pred             cEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecCCcEEEee-e-cCCcceec
Q psy1242         483 DLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHE-S-HNDNLQKT  539 (540)
Q Consensus       483 ~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~g~~l~~~-~-~~~~V~~v  539 (540)
                      +.+.+|++|-.  +|+.++|+.|.++|++++ |.++++|++..+.|..- . |.+.|.++
T Consensus       400 k~lasfRGHv~--~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v  457 (480)
T KOG0271|consen  400 KFLASFRGHVA--AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV  457 (480)
T ss_pred             chhhhhhhccc--eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence            99999999998  899999999999999964 89999999997776643 3 88888775

>KOG0272|consensus

Probab=99.96  E-value=1.5e-29  Score=247.40  Aligned_cols=247  Identities=15%  Similarity=0.158  Sum_probs=197.0

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCC--CCeeeccCCCCCCccccccCC--
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLD--PILTHPTSNNNAPVPKRHLGD--  329 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D--~~l~~~g~~~~~~~~~~~~~~--  329 (540)
                      ++...+..++..+||||.++.+++|+....... ...+|++.++    .+.|.|.  ..-+++++.+.. ...+++..  
T Consensus       178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~----~~~fhP~~~~~~lat~s~Dgt-vklw~~~~e~  252 (459)
T KOG0272|consen  178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVG----AAVFHPVDSDLNLATASADGT-VKLWKLSQET  252 (459)
T ss_pred             ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccccee----eEEEccCCCccceeeeccCCc-eeeeccCCCc
Confidence            444556666777999999999999998776533 4457876654    3445554  333444433322 22333321  


Q ss_pred             ---CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         330 ---NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       330 ---~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                         .+.+ ...++..++|+|+|++ |++++.|.+-++||+.++..+...               .||...|.+++|.|  
T Consensus       253 ~l~~l~g-H~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~Q---------------EGHs~~v~~iaf~~--  313 (459)
T KOG0272|consen  253 PLQDLEG-HLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQ---------------EGHSKGVFSIAFQP--  313 (459)
T ss_pred             chhhhhc-chhhheeeeecCCCce-eeecccccchhhcccccchhhHhh---------------cccccccceeEecC--
Confidence               1112 2356889999999996 799999999999999998877666               79999999999999  


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                        ||..++|||.|..-+|||+++           +.++..+.||..+|.+|+|+|+|..+||||.|++++||+. ..+.+
T Consensus       314 --DGSL~~tGGlD~~~RvWDlRt-----------gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  314 --DGSLAATGGLDSLGRVWDLRT-----------GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL  380 (459)
T ss_pred             --CCceeeccCccchhheeeccc-----------CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence              999999999999999999998           6789999999999999999999999999999999999987 44568


Q ss_pred             EEecCCCCCCCceEEEEee-CCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         486 RSLDPPSGFASPESVVMSR-EGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fsp-dg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      .++..|..  -|+.|+|+| .|.+|++ +.|+++++|+.. +.++.++. |++.|.+++
T Consensus       381 y~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D  437 (459)
T KOG0272|consen  381 YTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD  437 (459)
T ss_pred             eecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE
Confidence            89999998  789999999 7888888 569999999976 67788775 999998763

>KOG0272|consensus

Probab=99.96  E-value=6.7e-29  Score=242.95  Aligned_cols=234  Identities=18%  Similarity=0.169  Sum_probs=189.8

Q ss_pred             eecccceeeecCC--cEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242         251 HVTANTYVTLHMP--SVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL  327 (540)
Q Consensus       251 ~~~~~~~~~~~~~--~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~  327 (540)
                      |.+....+.+.+.  .+-+|||+.|+++++|+..+....+ ..+|...|    ..+.|.|+|..+.+++-+.. -..+.+
T Consensus       216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RV----s~VafHPsG~~L~TasfD~t-WRlWD~  290 (459)
T KOG0272|consen  216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARV----SRVAFHPSGKFLGTASFDST-WRLWDL  290 (459)
T ss_pred             cccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhh----eeeeecCCCceeeecccccc-hhhccc
Confidence            4444445455543  6789999999999999998755444 33565333    35679999988887753322 122222


Q ss_pred             CC----CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242         328 GD----NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       328 ~~----~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s  403 (540)
                      ..    ....+..-.+.+++|.+||. |+++|+.|..-||||+++|+++-.+               .||...|.+|+|+
T Consensus       291 ~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L---------------~gH~k~I~~V~fs  354 (459)
T KOG0272|consen  291 ETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFL---------------AGHIKEILSVAFS  354 (459)
T ss_pred             ccchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEe---------------cccccceeeEeEC
Confidence            11    12223333478899999999 7899999999999999999999888               8999999999999


Q ss_pred             cCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-C
Q psy1242         404 ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-F  481 (540)
Q Consensus       404 p~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~  481 (540)
                      |    +|-.|+|||.|++++|||++..           .++.++.+|.+.|+.|+|+| .|.+|+|+|.|++++||.. +
T Consensus       355 P----NGy~lATgs~Dnt~kVWDLR~r-----------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~  419 (459)
T KOG0272|consen  355 P----NGYHLATGSSDNTCKVWDLRMR-----------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT  419 (459)
T ss_pred             C----CceEEeecCCCCcEEEeeeccc-----------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence            9    9999999999999999999873           46889999999999999998 7889999999999999954 8


Q ss_pred             CcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242         482 GDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       482 g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~  522 (540)
                      +++++++.+|++  .|.++.++++|+++++ +-|+++++|.+
T Consensus       420 ~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  420 WSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             cccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeeccC
Confidence            999999999999  8899999999999998 45999999963

>KOG0315|consensus

Probab=99.96  E-value=1.4e-27  Score=219.32  Aligned_cols=250  Identities=15%  Similarity=0.161  Sum_probs=195.0

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc------ee
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK------LR  336 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~------~~  336 (540)
                      +.++|||+|.|.|||+|...++.+..++.|.   .+..+.+.+++|+..++++  .....+...+...-+..      ..
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~---dsqVNrLeiTpdk~~LAaa--~~qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHP---DSQVNRLEITPDKKDLAAA--GNQHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecC---ccceeeEEEcCCcchhhhc--cCCeeEEEEccCCCCCceeEEeccC
Confidence            5678999999999999999999999999998   5666789999999777765  22222333333222211      11


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      -.+..+.|..||++ +++|+.||++||||++...+.+.+                .|..+|++|..+|    +...|++|
T Consensus        84 kNVtaVgF~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~----------------~~~spVn~vvlhp----nQteLis~  142 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRW-MYTGSEDGTVKIWDLRSLSCQRNY----------------QHNSPVNTVVLHP----NQTELISG  142 (311)
T ss_pred             CceEEEEEeecCeE-EEecCCCceEEEEeccCcccchhc----------------cCCCCcceEEecC----CcceEEee
Confidence            12677888999997 699999999999999986655554                5789999999999    88899999


Q ss_pred             eCCCcEEEEEcCCCcccc--cCC------------------------------------CCCCcceEEeccCCCCEEEEE
Q psy1242         417 SADCTVLLWHWNARTQSI--VGE------------------------------------TDTPTPRATLTGHEQPVTSVA  458 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~--~~~------------------------------------~~~~~~~~~l~~h~~~V~~v~  458 (540)
                      ..+|.|++||+.......  +.+                                    ....+|+..+..|+..+..+.
T Consensus       143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~  222 (311)
T KOG0315|consen  143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL  222 (311)
T ss_pred             cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence            999999999987542211  000                                    112456677889999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCC--cEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cC
Q psy1242         459 ISAELGLVVSGSQLGPVLVHTTFG--DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HN  533 (540)
Q Consensus       459 ~spdg~~lasgs~Dg~v~iw~~~g--~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~  533 (540)
                      +|||+++||++|.|.+++||..++  +....+.+|..  -++.++||.||+||+++ +|+.+++|++. |+.++... |.
T Consensus       223 lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r--WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  223 LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR--WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc--eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence            999999999999999999996644  45678888888  56999999999999995 68999999987 88888775 55


Q ss_pred             CcceecC
Q psy1242         534 DNLQKTA  540 (540)
Q Consensus       534 ~~V~~va  540 (540)
                      ....|+|
T Consensus       301 K~~vc~~  307 (311)
T KOG0315|consen  301 KAAVCVA  307 (311)
T ss_pred             cccEEEE
Confidence            5555553

>KOG0286|consensus

Probab=99.96  E-value=5.5e-27  Score=220.04  Aligned_cols=254  Identities=17%  Similarity=0.169  Sum_probs=196.4

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC--
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--  328 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~--  328 (540)
                      |...+...++..+...++|+|.|+.+.+||..+......+..-   ..-.....++|.+..++.|.-+..- ....+.  
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~---s~WVMtCA~sPSg~~VAcGGLdN~C-siy~ls~~  129 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP---SSWVMTCAYSPSGNFVACGGLDNKC-SIYPLSTR  129 (343)
T ss_pred             cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC---ceeEEEEEECCCCCeEEecCcCcee-EEEecccc
Confidence            3444444455555666999999999999998775543332211   1122346688989888877422211 111111  


Q ss_pred             ---------CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEE
Q psy1242         329 ---------DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC  399 (540)
Q Consensus       329 ---------~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~  399 (540)
                               ..+. .......|+.|.+|+.  |++||.|.++.+||+++|+.+..+               .||.+.|.+
T Consensus       130 d~~g~~~v~r~l~-gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f---------------~GH~gDV~s  191 (343)
T KOG0286|consen  130 DAEGNVRVSRELA-GHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVF---------------HGHTGDVMS  191 (343)
T ss_pred             cccccceeeeeec-CccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEe---------------cCCcccEEE
Confidence                     0111 1122367777888776  589999999999999999999999               899999999


Q ss_pred             EEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         400 LSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       400 l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      ++++|+   +++.++||+.|++.+|||++.           +.+++++.||+..|++|+|.|+|.-+++||.|+++++++
T Consensus       192 lsl~p~---~~ntFvSg~cD~~aklWD~R~-----------~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD  257 (343)
T KOG0286|consen  192 LSLSPS---DGNTFVSGGCDKSAKLWDVRS-----------GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD  257 (343)
T ss_pred             EecCCC---CCCeEEecccccceeeeeccC-----------cceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence            999996   899999999999999999987           578999999999999999999999999999999999987


Q ss_pred             C-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEEeee-cCCcceecC
Q psy1242         480 T-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       480 ~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~~~~-~~~~V~~va  540 (540)
                      . ..+.+..+.......+|++++||..|++|.+ +.|..+.+||. .|+.+..+. |+++|.||.
T Consensus       258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~  322 (343)
T KOG0286|consen  258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG  322 (343)
T ss_pred             ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence            6 6667777776554458999999999999998 57899999994 688888886 999999973

>KOG0271|consensus

Probab=99.96  E-value=5.3e-28  Score=233.76  Aligned_cols=242  Identities=20%  Similarity=0.182  Sum_probs=187.0

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcc--cCCCCcCCCCCCCC-CccccCCCCeeeccCCCCCCcccc-----ccCCC
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASI--QSPSYAETPGSPPG-NLPLTLDPILTHPTSNNNAPVPKR-----HLGDN  330 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~--~~~~~~~~v~~~~~-~~~~s~D~~l~~~g~~~~~~~~~~-----~~~~~  330 (540)
                      ...+++..+||++.|++|++||+.+++..  ...+|+..+...+- .+...++..++++++.++......     .+...
T Consensus       164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l  243 (480)
T KOG0271|consen  164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL  243 (480)
T ss_pred             EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence            34444555999999999999999887744  34578766532221 122234445555555444432111     11112


Q ss_pred             cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------
Q psy1242         331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------  384 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------  384 (540)
                      ..+.  ..++|+.|--+|  +|++||.|++|++|+...|++...+++|...|+.                          
T Consensus       244 sgHT--~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se  319 (480)
T KOG0271|consen  244 SGHT--ASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE  319 (480)
T ss_pred             ccCc--cceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence            2233  336777665444  7899999999999999999999999999877743                          


Q ss_pred             --------------------------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         385 --------------------------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       385 --------------------------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                                                            +.+....||+..|+.+.|||    |+++|+++|.|.+|++|+
T Consensus       320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP----d~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP----DGRYIASASFDKSVKLWD  395 (480)
T ss_pred             HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC----CccEEEEeecccceeeee
Confidence                                                  23334578999999999999    999999999999999999


Q ss_pred             cCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeC
Q psy1242         427 WNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSRE  505 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspd  505 (540)
                      .++           ++.+.+|.||-..|..|+|+.|.++|+|||.|.++++|+. +.++...|.+|.+  .|.++.|+||
T Consensus       396 g~t-----------Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D--EVf~vDwspD  462 (480)
T KOG0271|consen  396 GRT-----------GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD--EVFAVDWSPD  462 (480)
T ss_pred             CCC-----------cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc--eEEEEEecCC
Confidence            877           6688999999999999999999999999999999999976 7788889999999  7899999999


Q ss_pred             CCEEEEe-cCCeEEEEe
Q psy1242         506 GVIVVNY-ERGHIAAFT  521 (540)
Q Consensus       506 g~~l~s~-~dg~I~lw~  521 (540)
                      |..+++| .|..+++|.
T Consensus       463 G~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  463 GQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CceeecCCCceEEEeec
Confidence            9999995 577889985

>KOG0279|consensus

Probab=99.95  E-value=1.7e-26  Score=215.58  Aligned_cols=204  Identities=23%  Similarity=0.263  Sum_probs=170.1

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEEEEe
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTT  345 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~s  345 (540)
                      .++++|.|.++.+|+.....                       .         ......+.+.++   ..  .+..++.+
T Consensus        30 ~l~sasrDk~ii~W~L~~dd-----------------------~---------~~G~~~r~~~GH---sH--~v~dv~~s   72 (315)
T KOG0279|consen   30 ILVSASRDKTIIVWKLTSDD-----------------------I---------KYGVPVRRLTGH---SH--FVSDVVLS   72 (315)
T ss_pred             eEEEcccceEEEEEEeccCc-----------------------c---------ccCceeeeeecc---ce--EecceEEc
Confidence            38899999999999975421                       1         111233444332   22  25667779


Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEE
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW  425 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lW  425 (540)
                      +||++ ..+|++|+++|+||+.+|+..+.+               .||...|.+++|++    |.+.|+|||.|.+|++|
T Consensus        73 ~dg~~-alS~swD~~lrlWDl~~g~~t~~f---------------~GH~~dVlsva~s~----dn~qivSGSrDkTiklw  132 (315)
T KOG0279|consen   73 SDGNF-ALSASWDGTLRLWDLATGESTRRF---------------VGHTKDVLSVAFST----DNRQIVSGSRDKTIKLW  132 (315)
T ss_pred             cCCce-EEeccccceEEEEEecCCcEEEEE---------------EecCCceEEEEecC----CCceeecCCCcceeeee
Confidence            99996 789999999999999999998888               89999999999999    99999999999999999


Q ss_pred             EcCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcCC--CCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEE
Q psy1242         426 HWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISAE--LGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESV  500 (540)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spd--g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l  500 (540)
                      ++-.            .+..++..+  .+.|.|++|+|.  ..+|+++|.|++|++|+. +.++...+.+|.+  .++.+
T Consensus       133 nt~g------------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~--~v~t~  198 (315)
T KOG0279|consen  133 NTLG------------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG--YVNTV  198 (315)
T ss_pred             eecc------------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc--cEEEE
Confidence            9754            456666544  789999999998  679999999999999987 6677788889988  78999


Q ss_pred             EEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242         501 VMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNLQKTA  540 (540)
Q Consensus       501 ~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~va  540 (540)
                      ++||||...++| .||.+.+||++ |+.+.++++...|.+++
T Consensus       199 ~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~  240 (315)
T KOG0279|consen  199 TVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLC  240 (315)
T ss_pred             EECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEE
Confidence            999999999995 58999999998 89999999999988764

>KOG1786|consensus

Probab=99.95  E-value=7.1e-29  Score=281.62  Aligned_cols=218  Identities=20%  Similarity=0.242  Sum_probs=175.6

Q ss_pred             cccccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccCcccccChhhHHHHHHHHh
Q psy1242           2 TYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYN   81 (540)
Q Consensus         2 ~~~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~~~~~~~~~~~~~~~~~~~   81 (540)
                      .++.+|.+|+++||+|||.||.++||+++|++||||||||+.+|.+..+|+.|+..+|++.||+|.+.+++.+.+..+|+
T Consensus       337 s~~~~W~~~~~~n~~yl~~ln~l~~r~~~~~~~~pi~pw~~~~~~~~~l~~~d~~~~r~~~~~~~~~s~e~~~~~~~r~~  416 (1081)
T KOG1786|consen  337 SAFGRWLSGELENFQYLMHLNTLAGRSIADLAQYPIFPWVLAFYDFSGLDLLDPLTARKLLKLGGHQSDEGYERFAKRFE  416 (1081)
T ss_pred             hhhcccccCchhhhhhhhhcCcccccchhhhccCcccceeeccccccchhhcChHhhhhhhhccCCCCHHHHHHHhhhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCC--CCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--ccccccccCCC----------------
Q psy1242          82 SWEHE--NIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYAETP----------------  130 (540)
Q Consensus        82 ~~~~~--~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~~~~----------------  130 (540)
                      ++.++  ..+.|||++||+++..|+.|++|.+ +         |.|+ ++|  ++..+.|....                
T Consensus       417 ~~~d~~~~~~~~~~~t~~~S~~~~~~y~~r~~p~~~~~~~i~~~~~~~~d~~~~s~~~~Wt~~~~~~~~~~i~eli~~~~  496 (1081)
T KOG1786|consen  417 EWLDQNAEDPLFHVLTHLLSPLIVMSYFARKNPLSELFLSIRRGYFPIADRLFHSRMQAWTPDEKGNLHSCIKELIPKFV  496 (1081)
T ss_pred             hhhccccccccccccccccchhhhhhhhhhcCcchHHHHHhhcccccccchhhhhhhcccCcccccccchhHHHHHHHhc
Confidence            99775  5678999999999999999999999 6         9999 999  77777776522                


Q ss_pred             -------------------CCCCCCCceecCCccC-CcCccCCCccchhhhcCCC-ccc--cCCCCC-CCCCCcchhhhh
Q psy1242         131 -------------------GSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNF-SQK--LRVRPI-TTPLYPRDIWVT  186 (540)
Q Consensus       131 -------------------~~~~~~~~v~lp~w~~-~~~~f~~~~~~r~~Le~~f-g~~--~~~~~~-~~~~~~~~a~~~  186 (540)
                                         +..+.|  |+||||+. .|++||  ..||++||++. .+.  -.++-+ +..++ ... ..
T Consensus       497 ~~p~~l~n~~~~~lg~~~~~~~~~~--~~lP~ws~~~~~~fi--~~h~~ale~~~vs~~Lh~wId~~~fgykq-~g~-~~  570 (1081)
T KOG1786|consen  497 NDPSFLENSVILDLGEKQNGDSVDD--VILPPWSSSSPREFI--RDHRKALESNRVSQRLHHWIDLTIFGYKQ-NGS-AA  570 (1081)
T ss_pred             cChHHHhhhhhhhhhhhcccccccc--eecCcccccCHHHHH--HHHhhcccccchhhccccceeeehhhhhh-cch-HH
Confidence                               333688  99999999 699999  99999999992 111  112223 44444 222 24


Q ss_pred             hhhccccc----chh---hhhhhhhhc-------cccccccccccCcc-ccccc
Q psy1242         187 ISVRSYAY----DIT---VLSLRWIVD-------SCWRAVSGITASEC-SLRIM  225 (540)
Q Consensus       187 ~~i~~~~y----~~~---~~~l~~~~~-------~~~~~~fGQ~P~Q~-~~~~~  225 (540)
                      ..+.|++|    ++.   -++.+.+.|       +.++++|||+|+|+ .++|+
T Consensus       571 ~~~~nv~~~~~~~l~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~  624 (1081)
T KOG1786|consen  571 VIAMNVFLVSNKHLFYVNSVLNLRGYDPLEQNILIVSNNHFKQTIKQLFPKKHS  624 (1081)
T ss_pred             HHHHHHHhhhhhhhccccchhhhcccchhhhhhhHHHhhccccchhhccccccc
Confidence            44556666    544   233333333       23568899999998 34554

>KOG0263|consensus

Probab=99.95  E-value=5e-27  Score=245.81  Aligned_cols=197  Identities=21%  Similarity=0.324  Sum_probs=167.3

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |..++=...+.++...|+|||.|.+||+|...+... +.+.+|                                     
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH-------------------------------------  492 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH-------------------------------------  492 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCC-------------------------------------
Confidence            333333345666677799999999999999865221 111111                                     


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                       .     ..+.++.|+|-|-+ +|+|+.|++.++|.....++++.+               .||.+.|.|++|+|    +
T Consensus       493 -~-----~PVwdV~F~P~GyY-Fatas~D~tArLWs~d~~~PlRif---------------aghlsDV~cv~FHP----N  546 (707)
T KOG0263|consen  493 -L-----APVWDVQFAPRGYY-FATASHDQTARLWSTDHNKPLRIF---------------AGHLSDVDCVSFHP----N  546 (707)
T ss_pred             -C-----cceeeEEecCCceE-EEecCCCceeeeeecccCCchhhh---------------cccccccceEEECC----c
Confidence             1     12566778999986 899999999999999988888887               89999999999999    9


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      +.+++|||.|.+||+||+.+           +..++.+.||.++|++++|||+|++|+||+.||.|++|+. +|.++..+
T Consensus       547 s~Y~aTGSsD~tVRlWDv~~-----------G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l  615 (707)
T KOG0263|consen  547 SNYVATGSSDRTVRLWDVST-----------GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL  615 (707)
T ss_pred             ccccccCCCCceEEEEEcCC-----------CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence            99999999999999999887           5678999999999999999999999999999999999987 78999999


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         489 DPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .+|.+  .|.++.||.+|.+||+ |.|.+|.+||+.
T Consensus       616 ~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  616 KGHTG--TIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             hcccC--ceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            99977  7899999999999999 568999999975

>KOG0295|consensus

Probab=99.95  E-value=4.5e-26  Score=219.50  Aligned_cols=250  Identities=16%  Similarity=0.175  Sum_probs=203.4

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC------cc
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP------VP  323 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~------~~  323 (540)
                      |-++++.+.+.+...+.++++.|.+|++||..+++. ....+|.++|.    .+++..-|.++++++.+...      ..
T Consensus       107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~----di~~~a~Gk~l~tcSsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVF----DISFDASGKYLATCSSDLSAKLWDFDTF  182 (406)
T ss_pred             cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcccccee----EEEEecCccEEEecCCccchhheeHHHH
Confidence            444566666777777799999999999999988775 44567886643    56677778888887655432      11


Q ss_pred             ccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242         324 KRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       324 ~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s  403 (540)
                      .+++.....+...  +.++.|-|-|.+ |++++.|++|+.|++.+|.++.++               .+|...|..++.+
T Consensus       183 ~~c~ks~~gh~h~--vS~V~f~P~gd~-ilS~srD~tik~We~~tg~cv~t~---------------~~h~ewvr~v~v~  244 (406)
T KOG0295|consen  183 FRCIKSLIGHEHG--VSSVFFLPLGDH-ILSCSRDNTIKAWECDTGYCVKTF---------------PGHSEWVRMVRVN  244 (406)
T ss_pred             HHHHHHhcCcccc--eeeEEEEecCCe-eeecccccceeEEecccceeEEec---------------cCchHhEEEEEec
Confidence            2223333344444  566666899986 799999999999999999999999               8899999999999


Q ss_pred             cCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC---------------CCEEEE
Q psy1242         404 ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE---------------LGLVVS  468 (540)
Q Consensus       404 p~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---------------g~~las  468 (540)
                      .    ||..++++|.|.++++|-+.+           .++...+.+|+.+|-|++|-|+               ++++++
T Consensus       245 ~----DGti~As~s~dqtl~vW~~~t-----------~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s  309 (406)
T KOG0295|consen  245 Q----DGTIIASCSNDQTLRVWVVAT-----------KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS  309 (406)
T ss_pred             C----CeeEEEecCCCceEEEEEecc-----------chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence            8    999999999999999999877           4577889999999999999773               258999


Q ss_pred             EeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         469 GSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       469 gs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                      +|.|++|++|+. +|.++.++.+|..  .|..++|+|.|+||++ ++|+++++||++ ++.+..+. |+.-|+++
T Consensus       310 ~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l  382 (406)
T KOG0295|consen  310 GSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL  382 (406)
T ss_pred             ecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence            999999999976 9999999999999  5799999999999998 688999999997 77777776 77777665

>KOG0273|consensus

Probab=99.94  E-value=5.6e-25  Score=218.03  Aligned_cols=257  Identities=15%  Similarity=0.144  Sum_probs=199.7

Q ss_pred             CcEEEEEccCcceEEEEcCCCCC--ccc---------CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAA--SIQ---------SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF  331 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~--~~~---------~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~  331 (540)
                      ...++++++.|.+.|+|++....  ...         ..+....-......+.|+.||.++++|+.+..... +...+..
T Consensus       190 ~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri-w~~~G~l  268 (524)
T KOG0273|consen  190 RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI-WNKDGNL  268 (524)
T ss_pred             hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEE-EecCchh
Confidence            34478999999999999986411  111         11122111233446899999999999965444322 2221111


Q ss_pred             C---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccce---eee---------------------
Q psy1242         332 S---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGV---VTS---------------------  384 (540)
Q Consensus       332 ~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~---v~~---------------------  384 (540)
                      .   ......+..+.|+..|.+ |++|+.|+++.+||..+|...+.++.|+.+   |.+                     
T Consensus       269 ~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~  347 (524)
T KOG0273|consen  269 ISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG  347 (524)
T ss_pred             hhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec
Confidence            1   112234788899999997 689999999999999999999988888766   321                     


Q ss_pred             --eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242         385 --RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE  462 (540)
Q Consensus       385 --~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd  462 (540)
                        +.+.++.||.+.|.+|.|+|    .|.+|+|+|.|+|++||.+..           ..+...+.+|...|..+.|+|.
T Consensus       348 ~~~P~~t~~GH~g~V~alk~n~----tg~LLaS~SdD~TlkiWs~~~-----------~~~~~~l~~Hskei~t~~wsp~  412 (524)
T KOG0273|consen  348 EDRPVKTFIGHHGEVNALKWNP----TGSLLASCSDDGTLKIWSMGQ-----------SNSVHDLQAHSKEIYTIKWSPT  412 (524)
T ss_pred             CCCcceeeecccCceEEEEECC----CCceEEEecCCCeeEeeecCC-----------CcchhhhhhhccceeeEeecCC
Confidence              45678889999999999999    899999999999999999755           3467888999999999999996


Q ss_pred             C---------CEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEee
Q psy1242         463 L---------GLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       463 g---------~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~  530 (540)
                      |         ..+++++.|++|++|+. .|.++.+|..|..  +|++++|+|+|+++|+|+ ||.|++|++. |++..+.
T Consensus       413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence            5         47999999999999976 9999999988988  899999999999999976 8999999987 7877777


Q ss_pred             ecCCccee
Q psy1242         531 SHNDNLQK  538 (540)
Q Consensus       531 ~~~~~V~~  538 (540)
                      .-++.|..
T Consensus       491 ~~~~~Ife  498 (524)
T KOG0273|consen  491 QGTGGIFE  498 (524)
T ss_pred             cCCCeEEE
Confidence            65555543

>KOG0279|consensus

Probab=99.93  E-value=1.4e-24  Score=202.75  Aligned_cols=204  Identities=20%  Similarity=0.227  Sum_probs=162.8

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  334 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~  334 (540)
                      ++-+.+..++...+|+|.|+++|+||..+++                                     ..+++.++-.  
T Consensus        66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~-------------------------------------~t~~f~GH~~--  106 (315)
T KOG0279|consen   66 VSDVVLSSDGNFALSASWDGTLRLWDLATGE-------------------------------------STRRFVGHTK--  106 (315)
T ss_pred             ecceEEccCCceEEeccccceEEEEEecCCc-------------------------------------EEEEEEecCC--
Confidence            4445566778889999999999999986532                                     1122222211  


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                         -+.+++|++|++. |++|+.|++|++|++- |.+..++..             .+|.+.|+|+.|+|.  ++.-+|+
T Consensus       107 ---dVlsva~s~dn~q-ivSGSrDkTiklwnt~-g~ck~t~~~-------------~~~~~WVscvrfsP~--~~~p~Iv  166 (315)
T KOG0279|consen  107 ---DVLSVAFSTDNRQ-IVSGSRDKTIKLWNTL-GVCKYTIHE-------------DSHREWVSCVRFSPN--ESNPIIV  166 (315)
T ss_pred             ---ceEEEEecCCCce-eecCCCcceeeeeeec-ccEEEEEec-------------CCCcCcEEEEEEcCC--CCCcEEE
Confidence               1788999999997 7999999999999997 455444411             234789999999993  1267899


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG  493 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~  493 (540)
                      ++|.|++|++||+++           .+....+.||.+.++.+++||||.++++|++||.+.+|+. .++.+.++.... 
T Consensus       167 s~s~DktvKvWnl~~-----------~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~-  234 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRN-----------CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD-  234 (315)
T ss_pred             EccCCceEEEEccCC-----------cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC-
Confidence            999999999999987           4567888999999999999999999999999999999976 788888876433 


Q ss_pred             CCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee
Q psy1242         494 FASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~  531 (540)
                        .|.+++|+|+...|+.+.+..|++|+++ +..+..+.
T Consensus       235 --~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~  271 (315)
T KOG0279|consen  235 --IVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELK  271 (315)
T ss_pred             --eEeeEEecCCceeEeeccCCceEEEeccchhhhhhcc
Confidence              7899999999999998888889999998 55555553

>KOG0263|consensus

Probab=99.92  E-value=1.5e-24  Score=227.33  Aligned_cols=240  Identities=19%  Similarity=0.197  Sum_probs=182.0

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcce
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKL  335 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~  335 (540)
                      +...+..+...+|-+=.|..|++|.....+..... +...+..+.   .-+.|-. .--. +.......+.+.++..+  
T Consensus       382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk-~~~~l~~~d---~~sad~~-~~~~-D~~~~~~~~~L~GH~GP--  453 (707)
T KOG0263|consen  382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLK-DASDLSNID---TESADVD-VDML-DDDSSGTSRTLYGHSGP--  453 (707)
T ss_pred             eeEeecCCcchhhccccccEEEEEecchhhhcccc-chhhhcccc---ccccchh-hhhc-cccCCceeEEeecCCCc--
Confidence            34456666777888888999999998643322211 111111110   0000000 0000 01111122223222222  


Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                         |..+.|+|+.++ |+++|.|+++|+|++++..++...               +||..+|.++.|+|    -|-+++|
T Consensus       454 ---Vyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y---------------~GH~~PVwdV~F~P----~GyYFat  510 (707)
T KOG0263|consen  454 ---VYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIY---------------KGHLAPVWDVQFAP----RGYYFAT  510 (707)
T ss_pred             ---eeeeeecccccc-eeeccCCcceeeeecccceeEEEe---------------cCCCcceeeEEecC----CceEEEe
Confidence               667778999996 689999999999999998888777               89999999999999    8999999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      ||.|++.++|....           ..|++.+.||-+.|.|+.|+|+..++++||.|.+|++|+. +|..++.+.+|.+ 
T Consensus       511 as~D~tArLWs~d~-----------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-  578 (707)
T KOG0263|consen  511 ASHDQTARLWSTDH-----------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-  578 (707)
T ss_pred             cCCCceeeeeeccc-----------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-
Confidence            99999999999765           4688999999999999999999999999999999999977 9999999999999 


Q ss_pred             CCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         495 ASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                       +|.+++|||+|++|++| .||.|++||+. |+++..+. |.+.|.+|
T Consensus       579 -~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl  625 (707)
T KOG0263|consen  579 -PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL  625 (707)
T ss_pred             -ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE
Confidence             89999999999999996 58999999987 67777764 88877765

>KOG0319|consensus

Probab=99.92  E-value=1e-23  Score=219.08  Aligned_cols=214  Identities=19%  Similarity=0.251  Sum_probs=174.8

Q ss_pred             CCcEEEEEccCcceEEEEcCCCCC-----cccCCCCcCCCCCCCC-------CccccCCCCeeeccCCCCCCccccccCC
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYAA-----SIQSPSYAETPGSPPG-------NLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~~-----~~~~~~~~~~v~~~~~-------~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      ..+..++|||.|.++++|-.+.+.     .....+|.++|+..+.       .++.|.|.++-.           |.+..
T Consensus       375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~-----------W~l~~  443 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL-----------WDLPK  443 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE-----------ecCCC
Confidence            456689999999999999653222     2234578877754442       233344443333           22222


Q ss_pred             C---------------cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC
Q psy1242         330 N---------------FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY  394 (540)
Q Consensus       330 ~---------------~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~  394 (540)
                      .               ..+..  .++|++++|+.+ |||+||.|++.+||+++.++...++               .||.
T Consensus       444 s~~~~~~~~~~~~~t~~aHdK--dIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~l~~vL---------------sGH~  505 (775)
T KOG0319|consen  444 SKETAFPIVLTCRYTERAHDK--DINCVAIAPNDK-LIATGSQDKTAKIWDLEQLRLLGVL---------------SGHT  505 (775)
T ss_pred             cccccccceehhhHHHHhhcc--cccceEecCCCc-eEEecccccceeeecccCceEEEEe---------------eCCc
Confidence            0               00111  278999999999 7999999999999999988888888               8999


Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGP  474 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~  474 (540)
                      ..|.||.|+|    ..+.++|+|.|+||+||.+.+           ..|++++.||+..|..+.|-.+|..|+||+.||.
T Consensus       506 RGvw~V~Fs~----~dq~laT~SgD~TvKIW~is~-----------fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl  570 (775)
T KOG0319|consen  506 RGVWCVSFSK----NDQLLATCSGDKTVKIWSIST-----------FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL  570 (775)
T ss_pred             cceEEEEecc----ccceeEeccCCceEEEEEecc-----------ceeeeeecCccceeEeeeeeeCCcEEEeccCCCc
Confidence            9999999999    889999999999999999987           5699999999999999999999999999999999


Q ss_pred             EEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEe
Q psy1242         475 VLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFT  521 (540)
Q Consensus       475 v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~  521 (540)
                      +++|+. ++.+++++..|.+  .|++++.++.+..+++ |.||.|.+|-
T Consensus       571 iKlWnikt~eC~~tlD~H~D--rvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  571 IKLWNIKTNECEMTLDAHND--RVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EEEEeccchhhhhhhhhccc--eeEEEeecCccceeEecCCCeEEEEee
Confidence            999976 8999999999999  8899999999998887 5689999994

>KOG0266|consensus

Probab=99.91  E-value=7.4e-23  Score=217.82  Aligned_cols=213  Identities=23%  Similarity=0.277  Sum_probs=170.9

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  334 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~  334 (540)
                      .+...+..++..+++++.|+++++|+......                                   ...+.+.   .  
T Consensus       162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------------------------~~~~~l~---~--  201 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------------------------NLLRELS---G--  201 (456)
T ss_pred             eEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------------------------hhhcccc---c--
Confidence            33455566666699999999999999743210                                   0011111   1  


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEc-cCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFST-DNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~-~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ..-.+.+++|+||+++ +++|+.|++++|||+ ..+..++++               .+|...|++++|+|    +|+.+
T Consensus       202 h~~~v~~~~fs~d~~~-l~s~s~D~tiriwd~~~~~~~~~~l---------------~gH~~~v~~~~f~p----~g~~i  261 (456)
T KOG0266|consen  202 HTRGVSDVAFSPDGSY-LLSGSDDKTLRIWDLKDDGRNLKTL---------------KGHSTYVTSVAFSP----DGNLL  261 (456)
T ss_pred             cccceeeeEECCCCcE-EEEecCCceEEEeeccCCCeEEEEe---------------cCCCCceEEEEecC----CCCEE
Confidence            1123678888999995 799999999999999 556888888               89999999999999    89999


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc--EEEEecC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD--LLRSLDP  490 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~--~~~~l~~  490 (540)
                      ++|+.|++|+|||+++           ++++..+.+|.+.|++++|++++.+|++++.||.|+||+. ++.  ++..+..
T Consensus       262 ~Sgs~D~tvriWd~~~-----------~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  330 (456)
T KOG0266|consen  262 VSGSDDGTVRIWDVRT-----------GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG  330 (456)
T ss_pred             EEecCCCcEEEEeccC-----------CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC
Confidence            9999999999999987           5789999999999999999999999999999999999987 666  4677777


Q ss_pred             CCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCccee
Q psy1242         491 PSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQK  538 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~  538 (540)
                      +....+++.++|+|+|.+++++ .|+.+++|++. ++.+.... |...+.|
T Consensus       331 ~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~  381 (456)
T KOG0266|consen  331 AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRC  381 (456)
T ss_pred             CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCccee
Confidence            7662148999999999999985 56799999998 77777664 4443433

>KOG0265|consensus

Probab=99.91  E-value=6.2e-23  Score=193.57  Aligned_cols=261  Identities=13%  Similarity=0.116  Sum_probs=198.6

Q ss_pred             CCCcccccccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCC--cccCCCCcCCCCCCCCCc
Q psy1242         226 SPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNL  303 (540)
Q Consensus       226 ~p~~f~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~--~~~~~~~~~~v~~~~~~~  303 (540)
                      .|++...++++++...+|.|+++.                 +||+|.|..|-+|+..+..  .-...+|++.|.    .+
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~-----------------~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM----~l   96 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSC-----------------FASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM----EL   96 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCe-----------------EeecCCcceEEEEeccccccceeeeccccceeE----ee
Confidence            577788889999999999998877                 9999999999999987543  223347887764    34


Q ss_pred             cccCCCCeeeccCCCCCC-----ccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecc
Q psy1242         304 PLTLDPILTHPTSNNNAP-----VPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGH  378 (540)
Q Consensus       304 ~~s~D~~l~~~g~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~  378 (540)
                      .+..|+..+.+++++...     ...+++..+..+..-  ++.+..+.-|..|+.+|+.|+++++||+++...++++   
T Consensus        97 ~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~--vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---  171 (338)
T KOG0265|consen   97 HGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF--VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---  171 (338)
T ss_pred             eeccCCCEEEEecCCceEEEEecccceeeehhccccce--eeecCccccCCeEEEecCCCceEEEEeecccchhhcc---
Confidence            466666555544333222     222222222222222  3444456678889999999999999999988888776   


Q ss_pred             cceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEE
Q psy1242         379 YGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVA  458 (540)
Q Consensus       379 ~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~  458 (540)
                                   ...-.++++.|.-    .+..+++|+-|+.|++||++.           .....++.||.+.|+.+.
T Consensus       172 -------------~~kyqltAv~f~d----~s~qv~sggIdn~ikvWd~r~-----------~d~~~~lsGh~DtIt~ls  223 (338)
T KOG0265|consen  172 -------------ENKYQLTAVGFKD----TSDQVISGGIDNDIKVWDLRK-----------NDGLYTLSGHADTITGLS  223 (338)
T ss_pred             -------------ccceeEEEEEecc----cccceeeccccCceeeecccc-----------CcceEEeecccCceeeEE
Confidence                         3456799999998    889999999999999999976           457899999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeC-----CCcEEEEecCCCCCC--CceEEEEeeCCCEEEEe-cCCeEEEEecCC-cEEEe
Q psy1242         459 ISAELGLVVSGSQLGPVLVHTT-----FGDLLRSLDPPSGFA--SPESVVMSREGVIVVNY-ERGHIAAFTMNG-NRLRH  529 (540)
Q Consensus       459 ~spdg~~lasgs~Dg~v~iw~~-----~g~~~~~l~~~~~~~--~v~~l~fspdg~~l~s~-~dg~I~lw~~~g-~~l~~  529 (540)
                      .+++|..+.+-+.|.++++|+.     ..+++..+.++....  ..-.++|+|++..+.+| .|..+++||..+ +.+..
T Consensus       224 ls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk  303 (338)
T KOG0265|consen  224 LSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK  303 (338)
T ss_pred             eccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEE
Confidence            9999999999999999999975     334577887765422  23578999999999885 589999999986 55555


Q ss_pred             ee-cCCcceecC
Q psy1242         530 ES-HNDNLQKTA  540 (540)
Q Consensus       530 ~~-~~~~V~~va  540 (540)
                      +. |.+.|++++
T Consensus       304 lpGh~gsvn~~~  315 (338)
T KOG0265|consen  304 LPGHYGSVNEVD  315 (338)
T ss_pred             cCCcceeEEEee
Confidence            54 888888764

>KOG0285|consensus

Probab=99.91  E-value=1.7e-23  Score=201.19  Aligned_cols=210  Identities=17%  Similarity=0.251  Sum_probs=176.6

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcce
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKL  335 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~  335 (540)
                      ..+.+.+-...++|+|.|+++++||+.++....++                                     .++..   
T Consensus       155 r~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-------------------------------------tGhi~---  194 (460)
T KOG0285|consen  155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-------------------------------------TGHIE---  194 (460)
T ss_pred             EEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-------------------------------------cchhh---
Confidence            33444455566999999999999998764422111                                     11111   


Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                        .+..+++|+-..+ +.+++.|+.|++||++..+.+..+               .||...|.|++.+|    .-..|+|
T Consensus       195 --~vr~vavS~rHpY-lFs~gedk~VKCwDLe~nkvIR~Y---------------hGHlS~V~~L~lhP----Tldvl~t  252 (460)
T KOG0285|consen  195 --TVRGVAVSKRHPY-LFSAGEDKQVKCWDLEYNKVIRHY---------------HGHLSGVYCLDLHP----TLDVLVT  252 (460)
T ss_pred             --eeeeeeecccCce-EEEecCCCeeEEEechhhhhHHHh---------------ccccceeEEEeccc----cceeEEe
Confidence              2566788888887 578889999999999999988877               89999999999999    7789999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      |+.|.++||||+++.           ..+..+.||..+|..+.+.|-...+++||.|++|++|+. .|+.+.++..|+. 
T Consensus       253 ~grDst~RvWDiRtr-----------~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-  320 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTR-----------ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-  320 (460)
T ss_pred             cCCcceEEEeeeccc-----------ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-
Confidence            999999999999983           478999999999999999998888999999999999976 8999999999988 


Q ss_pred             CCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         495 ASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                       .|.+++.+|....+|+++...|+.|++- |..+..++ |...|++|+
T Consensus       321 -svral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~  367 (460)
T KOG0285|consen  321 -SVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLS  367 (460)
T ss_pred             -eeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeee
Confidence             7899999999999999999999999964 88888876 777777763

>KOG0645|consensus

Probab=99.90  E-value=5.1e-22  Score=185.05  Aligned_cols=190  Identities=19%  Similarity=0.273  Sum_probs=154.4

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEEE
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV  343 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~  343 (540)
                      +.+++|||.|++||+|+...                       .|...+           +    ..++....-.+..+|
T Consensus        27 g~ilAscg~Dk~vriw~~~~-----------------------~~s~~c-----------k----~vld~~hkrsVRsvA   68 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSS-----------------------GDSWTC-----------K----TVLDDGHKRSVRSVA   68 (312)
T ss_pred             ceEEEeecCCceEEEEecCC-----------------------CCcEEE-----------E----Eeccccchheeeeee
Confidence            56799999999999999642                       111111           1    111112222467889


Q ss_pred             EecCCCEEEEEEecCCcEEEEEccCC--eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242         344 TTVDSRFLLACGFWDNSFRVFSTDNA--RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       344 ~spdg~~llasgs~Dgsv~iwd~~~g--~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      |+|.|++ ||+||.|.++.||.-..+  +++.++               .||...|.|++|++    +|.+|||+|+|.+
T Consensus        69 wsp~g~~-La~aSFD~t~~Iw~k~~~efecv~~l---------------EGHEnEVK~Vaws~----sG~~LATCSRDKS  128 (312)
T KOG0645|consen   69 WSPHGRY-LASASFDATVVIWKKEDGEFECVATL---------------EGHENEVKCVAWSA----SGNYLATCSRDKS  128 (312)
T ss_pred             ecCCCcE-EEEeeccceEEEeecCCCceeEEeee---------------eccccceeEEEEcC----CCCEEEEeeCCCe
Confidence            9999995 799999999999986644  344445               89999999999999    9999999999999


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC----CCcEEEEecCCCCCCCc
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT----FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~----~g~~~~~l~~~~~~~~v  497 (540)
                      |-||.+..        .+...+...|.+|...|..+.|+|...+|+|+|.|.+|++|..    +-.++.++.+|..  .|
T Consensus       129 VWiWe~de--------ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TV  198 (312)
T KOG0645|consen  129 VWIWEIDE--------DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TV  198 (312)
T ss_pred             EEEEEecC--------CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eE
Confidence            99999873        2335789999999999999999999999999999999999832    4468999999998  78


Q ss_pred             eEEEEeeCCCEEEE-ecCCeEEEEe
Q psy1242         498 ESVVMSREGVIVVN-YERGHIAAFT  521 (540)
Q Consensus       498 ~~l~fspdg~~l~s-~~dg~I~lw~  521 (540)
                      .+++|++.|..|++ .+|+++++|-
T Consensus       199 W~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  199 WSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             EEEEecCCCceEEEecCCcceEeee
Confidence            99999999988887 4679999997

>KOG0316|consensus

Probab=99.90  E-value=2.3e-22  Score=183.76  Aligned_cols=242  Identities=18%  Similarity=0.192  Sum_probs=181.3

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCC-cccCCCCcCCCCCCCCCccccCCCCeeeccCCC--------CCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN--------NAP  321 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~-~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~--------~~~  321 (540)
                      +..|+..+.+..++.+.+||+.|.+||+|++..+. ...+.+|..+|.+.+    .+.|...+++|..+        ...
T Consensus        16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~----~s~Dnskf~s~GgDk~v~vwDV~TG   91 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA----LSSDNSKFASCGGDKAVQVWDVNTG   91 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc----ccccccccccCCCCceEEEEEcccC
Confidence            44455566677778889999999999999998776 446678887776544    45555444444322        222


Q ss_pred             ccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC--eEEEEEecccceeeeeeEEEeeccCcceEE
Q psy1242         322 VPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA--RIVQIIFGHYGVVTSRIVQIIFGHYGVVTC  399 (540)
Q Consensus       322 ~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g--~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~  399 (540)
                      ...|+++++..+     ++.++|+.+.. ++++|+.|.++++||.++.  ++++.+               ....+.|.+
T Consensus        92 kv~Rr~rgH~aq-----VNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQil---------------dea~D~V~S  150 (307)
T KOG0316|consen   92 KVDRRFRGHLAQ-----VNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQIL---------------DEAKDGVSS  150 (307)
T ss_pred             eeeeecccccce-----eeEEEecCcce-EEEeccccceeEEEEcccCCCCccchh---------------hhhcCceeE
Confidence            344455555444     88899999988 6899999999999999864  566666               677889999


Q ss_pred             EEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         400 LSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       400 l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      |..+      +..|++||.||++|.+|++.++           ...-+  -..+|+|++|++|+.+.+.++.|+++++-+
T Consensus       151 i~v~------~heIvaGS~DGtvRtydiR~G~-----------l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  151 IDVA------EHEIVAGSVDGTVRTYDIRKGT-----------LSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLD  211 (307)
T ss_pred             EEec------ccEEEeeccCCcEEEEEeecce-----------eehhh--cCCcceeEEecCCCCEEEEeeccceeeecc
Confidence            9985      4689999999999999998743           22223  345799999999999999999999999866


Q ss_pred             C-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcc
Q psy1242         480 T-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNL  536 (540)
Q Consensus       480 ~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V  536 (540)
                      . +|+++...++|..--.=...+++.....+++| +||.|++||+. +..+..+++.+.|
T Consensus       212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v  271 (307)
T KOG0316|consen  212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV  271 (307)
T ss_pred             cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence            5 99999999999762212346677666777774 68999999975 7777777654443

>KOG0295|consensus

Probab=99.89  E-value=1.9e-22  Score=194.64  Aligned_cols=234  Identities=15%  Similarity=0.115  Sum_probs=180.0

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCC--cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC------
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP------  321 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~--~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~------  321 (540)
                      .|+.+..-+.+...+.++||||.|..+++||.....  .....+|+..|.+    +.|-|-|..+++++.+...      
T Consensus       148 GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~----V~f~P~gd~ilS~srD~tik~We~~  223 (406)
T KOG0295|consen  148 GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSS----VFFLPLGDHILSCSRDNTIKAWECD  223 (406)
T ss_pred             ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceee----EEEEecCCeeeecccccceeEEecc
Confidence            355555556677778889999999999999986532  3344566644432    2233334333333222111      


Q ss_pred             --ccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEE
Q psy1242         322 --VPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC  399 (540)
Q Consensus       322 --~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~  399 (540)
                        ....++.++.+     ++.-++++.||. |+|+++.|.+|++|-+.++++...+               .+|+-+|-|
T Consensus       224 tg~cv~t~~~h~e-----wvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~l---------------R~hEh~vEc  282 (406)
T KOG0295|consen  224 TGYCVKTFPGHSE-----WVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKAEL---------------REHEHPVEC  282 (406)
T ss_pred             cceeEEeccCchH-----hEEEEEecCCee-EEEecCCCceEEEEEeccchhhhhh---------------hccccceEE
Confidence              22222222211     467778899999 7999999999999999999888777               789999999


Q ss_pred             EEeccCcc-----------CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242         400 LSRSECNI-----------TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       400 l~~sp~~~-----------~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~las  468 (540)
                      ++|.|...           ..+..+.++|.|++|++||+.+           +.++.++.||.+.|..++|+|.|++|+|
T Consensus       283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-----------g~cL~tL~ghdnwVr~~af~p~Gkyi~S  351 (406)
T KOG0295|consen  283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-----------GMCLFTLVGHDNWVRGVAFSPGGKYILS  351 (406)
T ss_pred             EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-----------CeEEEEEecccceeeeeEEcCCCeEEEE
Confidence            99976200           0236899999999999999988           6799999999999999999999999999


Q ss_pred             EeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEe
Q psy1242         469 GSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  521 (540)
Q Consensus       469 gs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~  521 (540)
                      +..|+++++|+. +++++.++..|..  -++++.|..+..++++|+ |-++++|.
T Consensus       352 caDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  352 CADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCCceEEeccccceeeeee
Confidence            999999999976 8899999999988  689999999999999975 88899985

>KOG1786|consensus

Probab=99.89  E-value=2.6e-24  Score=244.66  Aligned_cols=151  Identities=34%  Similarity=0.631  Sum_probs=132.8

Q ss_pred             cccccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccCcccccChhhHHHHHHHHh
Q psy1242           2 TYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYN   81 (540)
Q Consensus         2 ~~~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~~~~~~~~~~~~~~~~~~~   81 (540)
                      .++++|..|+++||+||+.+|.+|||||||+.||||||||+.||.++.+||.+..+||+|++||+++     ++..+.+.
T Consensus       874 a~~~~~~~~~~~n~~y~~~~~~~agrs~nd~~q~~v~~~~~ad~~~k~~~l~~~~~~~~~~r~~a~~-----~~~~~~~~  948 (1081)
T KOG1786|consen  874 AITNTWEEGLISNFEYLTMLNLLAGRSFNDWMQYPVFPWVLADYVSKVLDLQDLLIYRDLSRPIAVQ-----KEKLEEHH  948 (1081)
T ss_pred             hhhhhhccccccchHHHHHHHHhhcCcHHHhhcCcceEEEecccceeeEeeeccccccccccchhHH-----HHHHhhhh
Confidence            4689999999999999999999999999999999999999999999999999999999999999922     33334455


Q ss_pred             hccCCCCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--ccccccccC--------------------
Q psy1242          82 SWEHENIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYAE--------------------  128 (540)
Q Consensus        82 ~~~~~~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~~--------------------  128 (540)
                      +++.+...+||||+|||+++.|.+|++|+. |         |.|| |||  ++...+|..                    
T Consensus       949 ~~~~e~~~~~~~~~~~s~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~dr~f~~l~~~~~~~~~~s~td~kel~p~f~~pe 1028 (1081)
T KOG1786|consen  949 SWESEDTEPYHYGSHYSNSGTVSHFLIRLPPFTEMFLSLQDGRFDFPDRLFHSLETAWSLASIESSTDVKELIPFFYLPE 1028 (1081)
T ss_pred             hhhhhccCCccccccccCccccccccccCCchHHHHHHhccCcCCCcccccccccccccccccccccchhhccccccCcc
Confidence            566666799999999999999999999999 7         9999 999  899999865                    


Q ss_pred             -------------CCCCCCCCCceecCCccCCcCccCCCccchhhhcCC
Q psy1242         129 -------------TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN  164 (540)
Q Consensus       129 -------------~~~~~~~~~~v~lp~w~~~~~~f~~~~~~r~~Le~~  164 (540)
                                   ++|+.++|  |.+   -..|..|+  .+||.||||+
T Consensus      1029 ~l~n~~~~d~g~~qn~~~~~~--~~~---~~~~~~~i--~~hr~al~s~ 1070 (1081)
T KOG1786|consen 1029 FLRNRNGFDFGERQNGERVND--VVL---RGDPRSFI--LIHRQALESE 1070 (1081)
T ss_pred             eeecCCccccCcccCCCcccc--eee---ccchHHHH--HHHHHhhhcc
Confidence                         67777777  666   33678888  8999999997

>KOG0319|consensus

Probab=99.89  E-value=2.1e-22  Score=209.33  Aligned_cols=250  Identities=14%  Similarity=0.124  Sum_probs=195.2

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc--------Ccc
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF--------SQK  334 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~--------~~~  334 (540)
                      ..-.++-++....+|+++..+..+....+|++.|.+.    ....+|.++++|+.+.+... |++....        ...
T Consensus       335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL----~~~~~g~llat~sKD~svil-Wr~~~~~~~~~~~a~~~g  409 (775)
T KOG0319|consen  335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSL----DVWSSGDLLATGSKDKSVIL-WRLNNNCSKSLCVAQANG  409 (775)
T ss_pred             ccceEEEEeCCCceEEEecCCCceEEEeCchhheeee----eecccCcEEEEecCCceEEE-EEecCCcchhhhhhhhcc
Confidence            3345666777889999998888888888999887643    34456778888876655533 3332111        112


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      +.-.+.+++++.-+.-+++++|.|.++++|++...+....      .+.-.+..+-..|...|+|++++|    +.++|+
T Consensus       410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~------~~~~~~~~t~~aHdKdIN~Vaia~----ndkLiA  479 (775)
T KOG0319|consen  410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF------PIVLTCRYTERAHDKDINCVAIAP----NDKLIA  479 (775)
T ss_pred             cccccceeeecccCccEEEEecCCceEEEecCCCcccccc------cceehhhHHHHhhcccccceEecC----CCceEE
Confidence            2334667777877777899999999999999975221100      000011112257999999999999    899999


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG  493 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~  493 (540)
                      |||.|.+++||++..           .....++.||...|.||.|++..++++|+|.|++|+||.. +..++.++.+|..
T Consensus       480 T~SqDktaKiW~le~-----------~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~  548 (775)
T KOG0319|consen  480 TGSQDKTAKIWDLEQ-----------LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS  548 (775)
T ss_pred             ecccccceeeecccC-----------ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc
Confidence            999999999999874           4678999999999999999999999999999999999965 8999999999998


Q ss_pred             CCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         494 FASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                        .|-.+.|-.+|..|++ ++||-|++|+++ +..+.++. |+++|.+++
T Consensus       549 --aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~  596 (775)
T KOG0319|consen  549 --AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS  596 (775)
T ss_pred             --eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence              7899999999999888 679999999998 78888886 999998764

>KOG0286|consensus

Probab=99.89  E-value=1.3e-21  Score=184.06  Aligned_cols=172  Identities=20%  Similarity=0.299  Sum_probs=147.6

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      .++..+|++|.|++ +|+|+-|+...||++.+.+.-...         +..+.+.+|.+.++|+.|-.     ...|+||
T Consensus        98 ~WVMtCA~sPSg~~-VAcGGLdN~Csiy~ls~~d~~g~~---------~v~r~l~gHtgylScC~f~d-----D~~ilT~  162 (343)
T KOG0286|consen   98 SWVMTCAYSPSGNF-VACGGLDNKCSIYPLSTRDAEGNV---------RVSRELAGHTGYLSCCRFLD-----DNHILTG  162 (343)
T ss_pred             eeEEEEEECCCCCe-EEecCcCceeEEEecccccccccc---------eeeeeecCccceeEEEEEcC-----CCceEec
Confidence            35889999999995 899999999999999865211111         12234489999999999985     5589999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      |.|.++.+||+.+           ++.+..+.||.+.|.+++++| +++.++||+-|+..++|+. .+.+++++.+|+. 
T Consensus       163 SGD~TCalWDie~-----------g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-  230 (343)
T KOG0286|consen  163 SGDMTCALWDIET-----------GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-  230 (343)
T ss_pred             CCCceEEEEEccc-----------ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-
Confidence            9999999999987           567899999999999999999 8999999999999999976 8999999999998 


Q ss_pred             CCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcc
Q psy1242         495 ASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNL  536 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V  536 (540)
                       .|++++|.|+|.-+++| +|++.++||+. .+.++.++++..+
T Consensus       231 -DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~  273 (343)
T KOG0286|consen  231 -DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII  273 (343)
T ss_pred             -ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence             78999999999999996 57999999998 7888888766544

>KOG0284|consensus

Probab=99.89  E-value=5.9e-23  Score=200.55  Aligned_cols=248  Identities=13%  Similarity=0.086  Sum_probs=195.4

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC----C
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG----D  329 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~----~  329 (540)
                      +..+...+++-.|+||+..+...+|+...-... ....|...|    ..+.++.++..+++|+...-. .-++..    .
T Consensus        99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~V----r~m~ws~~g~wmiSgD~gG~i-KyWqpnmnnVk  173 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPV----RTMKWSHNGTWMISGDKGGMI-KYWQPNMNNVK  173 (464)
T ss_pred             eeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccc----eeEEEccCCCEEEEcCCCceE-EecccchhhhH
Confidence            445677788888999999999999998653322 233566444    467899999988887543222 222221    1


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                      .+.......+.|++|+|.... +++++.||+|+|||....+....+               .||.-.|.|++|+|    .
T Consensus       174 ~~~ahh~eaIRdlafSpnDsk-F~t~SdDg~ikiWdf~~~kee~vL---------------~GHgwdVksvdWHP----~  233 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSK-FLTCSDDGTIKIWDFRMPKEERVL---------------RGHGWDVKSVDWHP----T  233 (464)
T ss_pred             HhhHhhhhhhheeccCCCCce-eEEecCCCeEEEEeccCCchhhee---------------ccCCCCcceeccCC----c
Confidence            111222234789999998775 799999999999999888777777               89999999999999    7


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      ..+|++||.|..|++||.++           +.|+.++.+|+..|..+.|++++.+|+++|+|..++++|. +.+.+.++
T Consensus       234 kgLiasgskDnlVKlWDprS-----------g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~  302 (464)
T KOG0284|consen  234 KGLIASGSKDNLVKLWDPRS-----------GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY  302 (464)
T ss_pred             cceeEEccCCceeEeecCCC-----------cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence            78999999999999999776           6789999999999999999999999999999999999876 57788999


Q ss_pred             cCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecC-CcEEEeee--cCCcceecC
Q psy1242         489 DPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTMN-GNRLRHES--HNDNLQKTA  540 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~-g~~l~~~~--~~~~V~~va  540 (540)
                      ++|+.  .|.++.|+|-.. ++++ |.||.|..|.+. .+.+....  |+..|.+|+
T Consensus       303 r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~  357 (464)
T KOG0284|consen  303 RGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLA  357 (464)
T ss_pred             hcchh--hheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeee
Confidence            99998  789999999655 4444 679999999987 55665554  888887764

>KOG0291|consensus

Probab=99.89  E-value=1.6e-21  Score=202.88  Aligned_cols=246  Identities=18%  Similarity=0.212  Sum_probs=179.6

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCCCC-----cc
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAP-----VP  323 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~-----~~  323 (540)
                      .|....+.....+++-++|||+.|+.||+||...+-+..++ .|+..|.    .+.|+.++..+.+++-++.+     .+
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt----~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT----AVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE----EEEEEecCCEEEEeecCCeEEeeeecc
Confidence            35566777788889999999999999999999877655443 4654442    34455555444333222111     12


Q ss_pred             ccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCC-cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242         324 KRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDN-SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR  402 (540)
Q Consensus       324 ~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dg-sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~  402 (540)
                      -+..+ .|....++...|+++.|.|. ++++|+.|. .|.||++++|+.+..+               .||.++|.+++|
T Consensus       424 YrNfR-Tft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllDiL---------------sGHEgPVs~l~f  486 (893)
T KOG0291|consen  424 YRNFR-TFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLDIL---------------SGHEGPVSGLSF  486 (893)
T ss_pred             cceee-eecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCeeeehh---------------cCCCCcceeeEE
Confidence            22222 23344566789999999999 567777665 6999999999999988               899999999999


Q ss_pred             ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C
Q psy1242         403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-F  481 (540)
Q Consensus       403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~  481 (540)
                      +|    +|..|+|||+|.|||+||+-...+          .+.++ .+...+..++|+|+|+.+|+++-||.|.+|+. .
T Consensus       487 ~~----~~~~LaS~SWDkTVRiW~if~s~~----------~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  487 SP----DGSLLASGSWDKTVRIWDIFSSSG----------TVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             cc----ccCeEEeccccceEEEEEeeccCc----------eeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            99    999999999999999999865322          22333 36677999999999999999999999999965 3


Q ss_pred             CcEEEEecCCC------------------CCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         482 GDLLRSLDPPS------------------GFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       482 g~~~~~l~~~~------------------~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      +..+.++.+..                  ..-..+.+++|+||..|++ |....|++|++. +-+|+.+.
T Consensus       552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence            43333332211                  0125789999999998888 456889999986 66666554

>KOG0266|consensus

Probab=99.88  E-value=3.7e-21  Score=204.84  Aligned_cols=211  Identities=18%  Similarity=0.234  Sum_probs=163.9

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcce
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKL  335 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~  335 (540)
                      .-..+.+++.++++++.|.++|+|+.....                                    ...+.+.++..   
T Consensus       207 ~~~~fs~d~~~l~s~s~D~tiriwd~~~~~------------------------------------~~~~~l~gH~~---  247 (456)
T KOG0266|consen  207 SDVAFSPDGSYLLSGSDDKTLRIWDLKDDG------------------------------------RNLKTLKGHST---  247 (456)
T ss_pred             eeeEECCCCcEEEEecCCceEEEeeccCCC------------------------------------eEEEEecCCCC---
Confidence            333444445569999999999999973210                                    11122222222   


Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                        .+.|++|+|+|+ ++++|+.|++|+|||+++++++..+               .+|.+.|++++|++    +|++|++
T Consensus       248 --~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l---------------~~hs~~is~~~f~~----d~~~l~s  305 (456)
T KOG0266|consen  248 --YVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKL---------------KGHSDGISGLAFSP----DGNLLVS  305 (456)
T ss_pred             --ceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEee---------------eccCCceEEEEECC----CCCEEEE
Confidence              268888999996 7899999999999999999999998               89999999999999    9999999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQP--VTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPS  492 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~  492 (540)
                      ++.|+.|+|||+.+...         .+...+.++...  ++++.|+|++.++++++.|+.+++|+. .+..+....+|.
T Consensus       306 ~s~d~~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~  376 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSK---------LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS  376 (456)
T ss_pred             cCCCccEEEEECCCCce---------eeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence            99999999999887321         045677777666  999999999999999999999999987 588899998887


Q ss_pred             CCC-CceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-c-CCcc
Q psy1242         493 GFA-SPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-H-NDNL  536 (540)
Q Consensus       493 ~~~-~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~-~~~V  536 (540)
                      ... .+.+...++.|.++++| .|+.|.+|++. +..+..+. | ...|
T Consensus       377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~  425 (456)
T KOG0266|consen  377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAV  425 (456)
T ss_pred             CcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCce
Confidence            631 23344557889999985 58999999998 55555554 5 4444

>KOG0273|consensus

Probab=99.88  E-value=3e-21  Score=191.66  Aligned_cols=236  Identities=19%  Similarity=0.186  Sum_probs=177.0

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCC-C-----CCCCCccccCCCCeeeccCCCCCCccc
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETP-G-----SPPGNLPLTLDPILTHPTSNNNAPVPK  324 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v-~-----~~~~~~~~s~D~~l~~~g~~~~~~~~~  324 (540)
                      |..++........+..+++++.|+++.+||..++...+...+...+ .     +.....+.+.|+.+.+.-     ....
T Consensus       275 HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~k-----v~~~  349 (524)
T KOG0273|consen  275 HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCK-----VGED  349 (524)
T ss_pred             cCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEE-----ecCC
Confidence            4445555566677888999999999999999877655544433222 1     111123334454333211     0111


Q ss_pred             cccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         325 RHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       325 ~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      +-+.....+  .-.+.++.|+|.|. ||+++|.|++++||+.........+               .+|...|..+.|+|
T Consensus       350 ~P~~t~~GH--~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~~~~l---------------~~Hskei~t~~wsp  411 (524)
T KOG0273|consen  350 RPVKTFIGH--HGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSNSVHDL---------------QAHSKEIYTIKWSP  411 (524)
T ss_pred             Ccceeeecc--cCceEEEEECCCCc-eEEEecCCCeeEeeecCCCcchhhh---------------hhhccceeeEeecC
Confidence            111111122  22378999999999 7899999999999999888888888               78888888999988


Q ss_pred             Ccc-----CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         405 CNI-----TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       405 ~~~-----~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      .+-     ..+..|++++.|++|++||+..           +.|+.+|..|..+|.+++|+|+|+++|+|+.||.|.+|.
T Consensus       412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~-----------gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  412 TGPVTSNPNMNLMLASASFDSTVKLWDVES-----------GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             CCCccCCCcCCceEEEeecCCeEEEEEccC-----------CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence            311     1346799999999999999876           678999999999999999999999999999999999995


Q ss_pred             -CCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         480 -TFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       480 -~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                       .+++++++..+..   .|..++|+.+|..|.. .+|+.+++.|+.
T Consensus       481 ~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  481 TKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence             5899999988655   4899999999988776 689999888753

>KOG0284|consensus

Probab=99.88  E-value=1.8e-22  Score=197.26  Aligned_cols=235  Identities=16%  Similarity=0.151  Sum_probs=176.2

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCC-CcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPS-YAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~-~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |-++++......++..++|++.++.|+.|+++-........ |.++|.    .++||+.-..+++++++... ..+....
T Consensus       137 HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIR----dlafSpnDskF~t~SdDg~i-kiWdf~~  211 (464)
T KOG0284|consen  137 HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIR----DLAFSPNDSKFLTCSDDGTI-KIWDFRM  211 (464)
T ss_pred             hcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhh----eeccCCCCceeEEecCCCeE-EEEeccC
Confidence            34444555555566669999999999999997654333333 335554    45566544444444443333 2222221


Q ss_pred             CcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242         330 NFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC  405 (540)
Q Consensus       330 ~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~  405 (540)
                      +-.    .....-+.|++|+|.-. |||+|+.|+.|++||.++|.++.++               .+|...|..+.|+| 
T Consensus       212 ~kee~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tl---------------h~HKntVl~~~f~~-  274 (464)
T KOG0284|consen  212 PKEERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATL---------------HGHKNTVLAVKFNP-  274 (464)
T ss_pred             CchhheeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcchhhhh---------------hhccceEEEEEEcC-
Confidence            111    11122378889999887 7899999999999999999999988               89999999999999 


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCC-Cc
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTTF-GD  483 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~~-g~  483 (540)
                         ++++|+|+|.|.+++++|+++           .+-++.+.+|+..|++++|+|- ..+|++|+.||.|..|... .+
T Consensus       275 ---n~N~Llt~skD~~~kv~DiR~-----------mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~  340 (464)
T KOG0284|consen  275 ---NGNWLLTGSKDQSCKVFDIRT-----------MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE  340 (464)
T ss_pred             ---CCCeeEEccCCceEEEEehhH-----------hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence               899999999999999999985           3467889999999999999994 4588999999999999664 34


Q ss_pred             EEEEec-CCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecC
Q psy1242         484 LLRSLD-PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  523 (540)
Q Consensus       484 ~~~~l~-~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~  523 (540)
                      .+-.+. .|..  .|++++|+|-|.+|++|+ |.++++|.-+
T Consensus       341 p~~~i~~AHd~--~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  341 PLGEIPPAHDG--EIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cccCCCccccc--ceeeeeccccceeEeecCCCcceeeeccC
Confidence            444443 3455  689999999999999975 7899999754

>KOG0318|consensus

Probab=99.88  E-value=1.4e-20  Score=189.07  Aligned_cols=243  Identities=14%  Similarity=0.188  Sum_probs=172.0

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCC--cccc----ccCC
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP--VPKR----HLGD  329 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~--~~~~----~~~~  329 (540)
                      +.+.+..++|+...++||+|+....+..   ....+.+.+    ..++|+.|+. +++.|..-...  ...+    .+++
T Consensus        67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I----~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGe  142 (603)
T KOG0318|consen   67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPI----KDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGE  142 (603)
T ss_pred             eCCCceEEeecCCcCcEEEEeccCcceeeeeeeeeccccc----ccceeCCCCcEEEEEecCccceeEEEEecCCCccce
Confidence            3334455999999999999998764322   112233222    3578999984 55555211000  0000    1112


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                      ...+...  ++++++-|...+-+++|+.|++|.+|+-.--+.-.++               ..|..-|.|+.++|    |
T Consensus       143 i~GhSr~--ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~---------------r~HskFV~~VRysP----D  201 (603)
T KOG0318|consen  143 ITGHSRR--INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF---------------REHSKFVNCVRYSP----D  201 (603)
T ss_pred             eecccee--EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc---------------cccccceeeEEECC----C
Confidence            2222222  5667777888887899999999999985433433344               77999999999999    9


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                      |++++|++.||++.++|-.+           ++.+..+.   +|++.|.+++|+||+..++++|.|.+++||+. +.+++
T Consensus       202 G~~Fat~gsDgki~iyDGkt-----------ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  202 GSRFATAGSDGKIYIYDGKT-----------GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             CCeEEEecCCccEEEEcCCC-----------ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence            99999999999999999554           45666665   89999999999999999999999999999975 55555


Q ss_pred             EEec-------------------------------------------CCCCCCCceEEEEeeCCCEEEEec-CCeEEEEe
Q psy1242         486 RSLD-------------------------------------------PPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  521 (540)
Q Consensus       486 ~~l~-------------------------------------------~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~  521 (540)
                      +++.                                           +|..  .|+++..++++++|.+|+ ||.|.-|+
T Consensus       271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyDG~I~~W~  348 (603)
T KOG0318|consen  271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYDGHINSWD  348 (603)
T ss_pred             EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccCceEEEEe
Confidence            4432                                           4444  689999999999999965 89999999


Q ss_pred             cC-CcE--EEeeecCCcceecC
Q psy1242         522 MN-GNR--LRHESHNDNLQKTA  540 (540)
Q Consensus       522 ~~-g~~--l~~~~~~~~V~~va  540 (540)
                      .. |..  +.-..|...|.+|+
T Consensus       349 ~~~g~~~~~~g~~h~nqI~~~~  370 (603)
T KOG0318|consen  349 SGSGTSDRLAGKGHTNQIKGMA  370 (603)
T ss_pred             cCCccccccccccccceEEEEe
Confidence            86 332  22233777776653

>KOG0281|consensus

Probab=99.87  E-value=1.1e-22  Score=194.82  Aligned_cols=201  Identities=20%  Similarity=0.290  Sum_probs=162.5

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeE
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVR  338 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~  338 (540)
                      .++-+...+|||..|.||++||..+-.+                                     .+.+.++     ..+
T Consensus       202 ClQYDD~kiVSGlrDnTikiWD~n~~~c-------------------------------------~~~L~GH-----tGS  239 (499)
T KOG0281|consen  202 CLQYDDEKIVSGLRDNTIKIWDKNSLEC-------------------------------------LKILTGH-----TGS  239 (499)
T ss_pred             EEEecchhhhcccccCceEEeccccHHH-------------------------------------HHhhhcC-----CCc
Confidence            4556677799999999999999754221                                     1111111     123


Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.|+.+  +.+ +|++|+.|.+|+|||+++|+++.++               -+|.+.|..+.|+.      .+++|+|.
T Consensus       240 VLCLqy--d~r-viisGSSDsTvrvWDv~tge~l~tl---------------ihHceaVLhlrf~n------g~mvtcSk  295 (499)
T KOG0281|consen  240 VLCLQY--DER-VIVSGSSDSTVRVWDVNTGEPLNTL---------------IHHCEAVLHLRFSN------GYMVTCSK  295 (499)
T ss_pred             EEeeec--cce-EEEecCCCceEEEEeccCCchhhHH---------------hhhcceeEEEEEeC------CEEEEecC
Confidence            677765  444 7899999999999999999999988               89999999999974      59999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      |.++.+||+...+.        ..+.+.+.||...|+.+.|+  .++++|+|.|.+|++|+. ++++++++.+|..  .|
T Consensus       296 DrsiaVWdm~sps~--------it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkR--GI  363 (499)
T KOG0281|consen  296 DRSIAVWDMASPTD--------ITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR--GI  363 (499)
T ss_pred             CceeEEEeccCchH--------HHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccc--cc
Confidence            99999999976432        35677889999999999985  569999999999999966 8999999999987  44


Q ss_pred             eEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         498 ESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       498 ~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                      .|+.  ..|+++++| +|.+|++|++. |..|+.++ |++-|.|+
T Consensus       364 AClQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRci  406 (499)
T KOG0281|consen  364 ACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI  406 (499)
T ss_pred             eehh--ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhe
Confidence            4444  578999985 68999999998 98888876 87777765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.87  E-value=3.7e-20  Score=181.05  Aligned_cols=238  Identities=21%  Similarity=0.290  Sum_probs=178.3

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-cCc---ceeeE
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FSQ---KLRVR  338 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-~~~---~~~v~  338 (540)
                      ...+++++.|+.+++|+....... ....|...+    ..+.+++++..+++++.+.. ...+.+... ...   .....
T Consensus        21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~~~~~~-i~i~~~~~~~~~~~~~~~~~~   95 (289)
T cd00200          21 GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV----RDVAASADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSY   95 (289)
T ss_pred             CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcce----eEEEECCCCCEEEEEcCCCe-EEEEEcCcccceEEEeccCCc
Confidence            334888899999999998765422 222343222    24667777755554432222 222222210 000   11113


Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.++.++++++ ++++++.|+.+++||+.+++....+               ..|.+.|++++|+|    ++.++++++.
T Consensus        96 i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~----~~~~l~~~~~  155 (289)
T cd00200          96 VSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTL---------------RGHTDWVNSVAFSP----DGTFVASSSQ  155 (289)
T ss_pred             EEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEe---------------ccCCCcEEEEEEcC----cCCEEEEEcC
Confidence            67888899987 5788878999999999988888777               67889999999999    8889988888


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      |+.|++||++.           .+++..+..|...+.+++|+|++..+++++.||.+++|+. +++.+..+..+..  .+
T Consensus       156 ~~~i~i~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i  222 (289)
T cd00200         156 DGTIKLWDLRT-----------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GV  222 (289)
T ss_pred             CCcEEEEEccc-----------cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ce
Confidence            99999999875           3466777889999999999999999999999999999977 5778888877776  78


Q ss_pred             eEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         498 ESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       498 ~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                      .+++|+|++.++++++ +|.|++|++. ++.+..+. |...|.++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~  267 (289)
T cd00200         223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL  267 (289)
T ss_pred             EEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence            9999999999999877 9999999988 66666664 66667665

>KOG0276|consensus

Probab=99.87  E-value=3e-21  Score=197.13  Aligned_cols=180  Identities=21%  Similarity=0.213  Sum_probs=153.4

Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee----------------------------eeEEEeeccC
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS----------------------------RIVQIIFGHY  394 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~----------------------------~~~~~l~~h~  394 (540)
                      .|-+--++ +++|+.|..||||+..+++.++.+++|++++.+                            .+.+++.||.
T Consensus        62 kfiaRknW-iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~  140 (794)
T KOG0276|consen   62 KFIARKNW-IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE  140 (794)
T ss_pred             eeeeccce-EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence            33445555 799999999999999999999999999999865                            6889999999


Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC--CEEEEEeCC
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL--GLVVSGSQL  472 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg--~~lasgs~D  472 (540)
                      ..|.+|+|.|.   |.+.++|+|.|+||+||.+..           ..|..++.||+..|+||++-+-|  .+++||+.|
T Consensus       141 HyVMqv~fnPk---D~ntFaS~sLDrTVKVWslgs-----------~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD  206 (794)
T KOG0276|consen  141 HYVMQVAFNPK---DPNTFASASLDRTVKVWSLGS-----------PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD  206 (794)
T ss_pred             eEEEEEEecCC---CccceeeeeccccEEEEEcCC-----------CCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence            99999999995   889999999999999999865           46889999999999999998865  499999999


Q ss_pred             CcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCC-cEEEeee-cCCcceec
Q psy1242         473 GPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG-NRLRHES-HNDNLQKT  539 (540)
Q Consensus       473 g~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g-~~l~~~~-~~~~V~~v  539 (540)
                      .+++||+. +..|++++.+|..  .|..++|+|.=.++++| .||++++|.... ++..++. .-++|.||
T Consensus       207 ~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I  275 (794)
T KOG0276|consen  207 LTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI  275 (794)
T ss_pred             ceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence            99999986 8889999999998  68999999999999995 589999997652 2223333 33455554

>KOG0291|consensus

Probab=99.87  E-value=1.5e-20  Score=195.73  Aligned_cols=247  Identities=17%  Similarity=0.135  Sum_probs=180.9

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCC--CCCccccccCCCc-
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN--NAPVPKRHLGDNF-  331 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~--~~~~~~~~~~~~~-  331 (540)
                      .+...++....++|++=..+...++...+-..+...+-+   ......++++..|.-++-|+.-  .-.+..|+..... 
T Consensus       268 vtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis---~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl  344 (893)
T KOG0291|consen  268 VTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS---DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL  344 (893)
T ss_pred             eeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc---cceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence            555667777888888877777778876553333322211   1222345555556555544211  1112233333221 


Q ss_pred             -CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         332 -SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       332 -~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                       .+.+--...|++++|||+. +|+|+.||.|+|||.++|-|+.++               ..|...|+.+.|+.    .|
T Consensus       345 KQQgH~~~i~~l~YSpDgq~-iaTG~eDgKVKvWn~~SgfC~vTF---------------teHts~Vt~v~f~~----~g  404 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQL-IATGAEDGKVKVWNTQSGFCFVTF---------------TEHTSGVTAVQFTA----RG  404 (893)
T ss_pred             eccccccceeeEEECCCCcE-EEeccCCCcEEEEeccCceEEEEe---------------ccCCCceEEEEEEe----cC
Confidence             1222334789999999994 899999999999999999999999               89999999999999    99


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC-CCEEEEEEcCCCCEEEEEeCCCc-EEEEeC-CCcEEEE
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE-QPVTSVAISAELGLVVSGSQLGP-VLVHTT-FGDLLRS  487 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~~spdg~~lasgs~Dg~-v~iw~~-~g~~~~~  487 (540)
                      +.++++|.||+|+.||+..           ....+++.... -...|++..|.|.+++.|+.|.. |.||.. +|+++-.
T Consensus       405 ~~llssSLDGtVRAwDlkR-----------YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi  473 (893)
T KOG0291|consen  405 NVLLSSSLDGTVRAWDLKR-----------YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI  473 (893)
T ss_pred             CEEEEeecCCeEEeeeecc-----------cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence            9999999999999999875           34566665443 35678999999999999998864 688965 9999999


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecCCc--EEEeeecCCcce
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGN--RLRHESHNDNLQ  537 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~g~--~l~~~~~~~~V~  537 (540)
                      +.+|++  ||.+++|+|+|..|++++ |.+|++|++-+.  .+.++.+...++
T Consensus       474 LsGHEg--PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl  524 (893)
T KOG0291|consen  474 LSGHEG--PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVL  524 (893)
T ss_pred             hcCCCC--cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecccee
Confidence            999999  999999999999999976 999999997533  444444433333

>KOG0285|consensus

Probab=99.87  E-value=3.6e-21  Score=185.22  Aligned_cols=171  Identities=14%  Similarity=0.223  Sum_probs=153.2

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      .++.|+++.|-+++ +++|+.|++++|||+.+|++..++               .||...|..+++|+    ---+++++
T Consensus       152 gWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkltl---------------tGhi~~vr~vavS~----rHpYlFs~  211 (460)
T KOG0285|consen  152 GWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLTL---------------TGHIETVRGVAVSK----RHPYLFSA  211 (460)
T ss_pred             ceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEee---------------cchhheeeeeeecc----cCceEEEe
Confidence            35899999999986 799999999999999999999888               89999999999998    77899999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA  495 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~  495 (540)
                      +.|+.|+.||+..           .+.++.+.||-..|.|++++|..+.|++|++|.+++||+. +...+.++.+|..  
T Consensus       212 gedk~VKCwDLe~-----------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~--  278 (460)
T KOG0285|consen  212 GEDKQVKCWDLEY-----------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN--  278 (460)
T ss_pred             cCCCeeEEEechh-----------hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC--
Confidence            9999999999976           4678899999999999999999999999999999999976 7788999999998  


Q ss_pred             CceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         496 SPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      +|.++.+.|....+++ +.|++|++||+. |+-+.++. |+..|.|++
T Consensus       279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~  326 (460)
T KOG0285|consen  279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC  326 (460)
T ss_pred             cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEe
Confidence            8899999886555555 569999999986 88888876 778887764

>KOG0275|consensus

Probab=99.87  E-value=7.2e-22  Score=187.58  Aligned_cols=210  Identities=21%  Similarity=0.228  Sum_probs=173.1

Q ss_pred             eeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceee
Q psy1242         258 VTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRV  337 (540)
Q Consensus       258 ~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v  337 (540)
                      .++++++-.++|+|.|+-+-+||..+++...-..+.            .+|...                      -..-
T Consensus       219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ------------Aqd~fM----------------------Mmd~  264 (508)
T KOG0275|consen  219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------------AQDNFM----------------------MMDD  264 (508)
T ss_pred             eeeCCCCceEeeccccceeeeehhccchhhhhhhhh------------hhccee----------------------eccc
Confidence            357778888999999999999998775533222211            000000                      0112


Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .+.|+.||.|.+ ++|+|+.||.|+||.+++|.++..+.              .+|...|+|+.|+.    |+..++++|
T Consensus       265 aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClRrFd--------------rAHtkGvt~l~FSr----D~SqiLS~s  325 (508)
T KOG0275|consen  265 AVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLRRFD--------------RAHTKGVTCLSFSR----DNSQILSAS  325 (508)
T ss_pred             ceEEEeecccHH-HhhccCcCCcEEEEEEecchHHHHhh--------------hhhccCeeEEEEcc----Ccchhhccc
Confidence            378999999999 68999999999999999999998883              48999999999999    999999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFAS  496 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~  496 (540)
                      .|.+++|--+..           ++++..+.||.+.|+...|++||..++++|.||+|++|.. +++++.+++......+
T Consensus       326 fD~tvRiHGlKS-----------GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~  394 (508)
T KOG0275|consen  326 FDQTVRIHGLKS-----------GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP  394 (508)
T ss_pred             ccceEEEecccc-----------chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence            999999998765           6789999999999999999999999999999999999966 8899999987766568


Q ss_pred             ceEEEEeeCC--CEEEEecCCeEEEEecCCcEEEeee
Q psy1242         497 PESVVMSREG--VIVVNYERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       497 v~~l~fspdg--~~l~s~~dg~I~lw~~~g~~l~~~~  531 (540)
                      |.++..-|..  +++++...++|.+-++.|+.+++++
T Consensus       395 vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfs  431 (508)
T KOG0275|consen  395 VNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFS  431 (508)
T ss_pred             ceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeec
Confidence            8888887753  4677777789999999998888774

>PTZ00421 coronin; Provisional

Probab=99.87  E-value=7.5e-20  Score=194.80  Aligned_cols=162  Identities=13%  Similarity=0.094  Sum_probs=128.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|+|++..+|++|+.|++|+|||+++++.+..+               .+|.+.|.+++|+|    +|.+|++|+.
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---------------~~h~~~V~sla~sp----dG~lLatgs~  188 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI---------------KCHSDQITSLEWNL----DGSLLCTTSK  188 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---------------cCCCCceEEEEEEC----CCCEEEEecC
Confidence            6788899987557899999999999999999888777               78999999999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCC-EEEEEEcCCCCEEEEEe----CCCcEEEEeCC--CcEEEEecCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQP-VTSVAISAELGLVVSGS----QLGPVLVHTTF--GDLLRSLDPP  491 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~v~~spdg~~lasgs----~Dg~v~iw~~~--g~~~~~l~~~  491 (540)
                      |++|+|||++.           ++.+..+.+|.+. +..+.|.+++..+++++    .|+.|++|+..  ...+.....+
T Consensus       189 Dg~IrIwD~rs-----------g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d  257 (493)
T PTZ00421        189 DKKLNIIDPRD-----------GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD  257 (493)
T ss_pred             CCEEEEEECCC-----------CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence            99999999876           4567788888764 45678899888777654    47899999863  2344444433


Q ss_pred             CCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcEEEeee
Q psy1242         492 SGFASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~l~~~~  531 (540)
                      ... .+....|++++.+|+++  +|+.|++|++. ++.+....
T Consensus       258 ~~~-~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        258 QSS-ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             CCC-ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            321 35567789999988874  48999999987 66655543

>PTZ00421 coronin; Provisional

Probab=99.86  E-value=6.9e-20  Score=195.10  Aligned_cols=161  Identities=15%  Similarity=0.165  Sum_probs=131.2

Q ss_pred             EEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC-cEEEE
Q psy1242         338 RHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD-CFIAS  415 (540)
Q Consensus       338 ~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg-~~l~s  415 (540)
                      .+.+++|+| +++ +|++|+.|++|++||+.++......        ...+..+.+|...|.+++|+|    ++ .+|++
T Consensus        77 ~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~--------~~~l~~L~gH~~~V~~l~f~P----~~~~iLaS  143 (493)
T PTZ00421         77 PIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNI--------SDPIVHLQGHTKKVGIVSFHP----SAMNVLAS  143 (493)
T ss_pred             CEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCcccccc--------CcceEEecCCCCcEEEEEeCc----CCCCEEEE
Confidence            378889999 777 5799999999999999765321110        012233489999999999999    54 79999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      |+.|++|+|||+..           ++++..+.+|...|.+++|+|+|.+|++++.||+|+||+. +++.+.++.+|.+.
T Consensus       144 gs~DgtVrIWDl~t-----------g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~  212 (493)
T PTZ00421        144 AGADMVVNVWDVER-----------GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA  212 (493)
T ss_pred             EeCCCEEEEEECCC-----------CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence            99999999999876           4567788999999999999999999999999999999976 78888889888762


Q ss_pred             CCceEEEEeeCCCEEEE-e----cCCeEEEEecC
Q psy1242         495 ASPESVVMSREGVIVVN-Y----ERGHIAAFTMN  523 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~----~dg~I~lw~~~  523 (540)
                       .+..+.|.+++..+++ |    .|+.|++||+.
T Consensus       213 -~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        213 -KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             -cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence             2457889998777765 3    36899999986

>KOG0300|consensus

Probab=99.86  E-value=1.4e-20  Score=178.45  Aligned_cols=237  Identities=20%  Similarity=0.279  Sum_probs=185.0

Q ss_pred             EEEEccCcceEEEEcCCCCC-cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccc-----ccCC----------
Q psy1242         266 VTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR-----HLGD----------  329 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~-~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~-----~~~~----------  329 (540)
                      ++.|+|.|.+.++|.+.++. ...+.+|.++|.    ++.|++.+.++++++++......+     .+..          
T Consensus       162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVN----sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE  237 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESGACLATYTGHTGSVN----SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE  237 (481)
T ss_pred             ceeecccccceeEEeeccccceeeeccccccee----eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence            68899999999999999877 557788987775    466888888888776443321111     0000          


Q ss_pred             ----C-------------c-Ccceee----------EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccce
Q psy1242         330 ----N-------------F-SQKLRV----------RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGV  381 (540)
Q Consensus       330 ----~-------------~-~~~~~v----------~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~  381 (540)
                          .             . .+.+++          .+.|..|-..|+. +++++||.+..+||+++|+.++.+      
T Consensus       238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRTAnlwDVEtge~v~~L------  310 (481)
T KOG0300|consen  238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRTANLWDVETGEVVNIL------  310 (481)
T ss_pred             hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeeccccceeeeeccCceeccc------
Confidence                0             0 011111          1556667777886 699999999999999999999998      


Q ss_pred             eeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC
Q psy1242         382 VTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA  461 (540)
Q Consensus       382 v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp  461 (540)
                               .||....+.++-+|    ..++++|+|.|.+.++||++..          ...+..+.||.+.|+++.|..
T Consensus       311 ---------tGHd~ELtHcstHp----tQrLVvTsSrDtTFRLWDFRea----------I~sV~VFQGHtdtVTS~vF~~  367 (481)
T KOG0300|consen  311 ---------TGHDSELTHCSTHP----TQRLVVTSSRDTTFRLWDFREA----------IQSVAVFQGHTDTVTSVVFNT  367 (481)
T ss_pred             ---------cCcchhccccccCC----cceEEEEeccCceeEeccchhh----------cceeeeecccccceeEEEEec
Confidence                     89999999999999    8899999999999999998742          356789999999999999987


Q ss_pred             CCCEEEEEeCCCcEEEEeCC--CcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEeee------c
Q psy1242         462 ELGLVVSGSQLGPVLVHTTF--GDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHES------H  532 (540)
Q Consensus       462 dg~~lasgs~Dg~v~iw~~~--g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~~~------~  532 (540)
                      +. .+++||.|.+|+||+..  ...+.+++...   +++.++++..+.+|+.- +..+|++||++|..|+.+.      |
T Consensus       368 dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH  443 (481)
T KOG0300|consen  368 DD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH  443 (481)
T ss_pred             CC-ceeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc
Confidence            65 57899999999999763  34567776544   68899999988899984 5688999999999887663      7


Q ss_pred             CCcceecC
Q psy1242         533 NDNLQKTA  540 (540)
Q Consensus       533 ~~~V~~va  540 (540)
                      ..-|.|+|
T Consensus       444 rRMV~c~A  451 (481)
T KOG0300|consen  444 RRMVTCCA  451 (481)
T ss_pred             ceeeeeee
Confidence            77777765

>KOG0293|consensus

Probab=99.86  E-value=8.2e-21  Score=185.71  Aligned_cols=261  Identities=15%  Similarity=0.130  Sum_probs=185.2

Q ss_pred             cccCcccccccCCCcccccccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCc----ccCC
Q psy1242         215 ITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS----IQSP  290 (540)
Q Consensus       215 Q~P~Q~~~~~~~p~~f~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~----~~~~  290 (540)
                      |+|+|-      -.++. .+.+++..++|++|++.                 +||+|.|.|..+|.......    ....
T Consensus       211 qip~qt------~qil~-~htdEVWfl~FS~nGky-----------------LAsaSkD~Taiiw~v~~d~~~kl~~tlv  266 (519)
T KOG0293|consen  211 QIPSQT------WQILQ-DHTDEVWFLQFSHNGKY-----------------LASASKDSTAIIWIVVYDVHFKLKKTLV  266 (519)
T ss_pred             cCCchh------hhhHh-hCCCcEEEEEEcCCCee-----------------EeeccCCceEEEEEEecCcceeeeeeee
Confidence            777771      11222 35677888888888776                 99999999999999876543    2334


Q ss_pred             CCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc-----CCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEE
Q psy1242         291 SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL-----GDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFS  365 (540)
Q Consensus       291 ~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd  365 (540)
                      +|..+|.    .+.||||...+++++.+.. ...+..     ...+.++...++.+++|.|||.. +++|+.|+++..||
T Consensus       267 gh~~~V~----yi~wSPDdryLlaCg~~e~-~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wd  340 (519)
T KOG0293|consen  267 GHSQPVS----YIMWSPDDRYLLACGFDEV-LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWD  340 (519)
T ss_pred             cccCceE----EEEECCCCCeEEecCchHh-eeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEec
Confidence            6665543    6789999877776642222 222221     22344455667889999999998 79999999999999


Q ss_pred             ccCCeEEEEEeccc-------------ceeee--------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         366 TDNARIVQIIFGHY-------------GVVTS--------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       366 ~~~g~~~~~l~~~~-------------~~v~~--------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ++ |..+...++-.             ..+..              +.-..+-.-..+|++++.|.    +|+++++.-.
T Consensus       341 lD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~----d~k~~LvnL~  415 (519)
T KOG0293|consen  341 LD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISK----DGKLALVNLQ  415 (519)
T ss_pred             CC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcC----CCcEEEEEcc
Confidence            87 44333332211             01100              01111122356899999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCC--EEEEEEcC-CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQP--VTSVAISA-ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      +..+.+||+..           ...++.+.||+..  +..-||-- +..+++|||.|+.|+||.+ +|+++.++.+|.. 
T Consensus       416 ~qei~LWDl~e-----------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~-  483 (519)
T KOG0293|consen  416 DQEIHLWDLEE-----------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK-  483 (519)
T ss_pred             cCeeEEeecch-----------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc-
Confidence            99999999874           4567788888764  33334433 4479999999999999976 9999999999998 


Q ss_pred             CCceEEEEeeCCC-EEEE-ecCCeEEEEecC
Q psy1242         495 ASPESVVMSREGV-IVVN-YERGHIAAFTMN  523 (540)
Q Consensus       495 ~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~  523 (540)
                       .|++++|+|... .+|+ |+||+|++|.+.
T Consensus       484 -~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  484 -TVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             -eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence             789999999766 4555 568999999875

>KOG0265|consensus

Probab=99.86  E-value=6.5e-20  Score=173.26  Aligned_cols=236  Identities=19%  Similarity=0.172  Sum_probs=178.2

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  328 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~  328 (540)
                      .|..|+.-+++..++..++|||.|.+++.||..+++... ..+|.+-|.+..   +.-..+.++.+++++.. ...+.++
T Consensus        88 gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~---p~rrg~~lv~SgsdD~t-~kl~D~R  163 (338)
T KOG0265|consen   88 GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD---PSRRGPQLVCSGSDDGT-LKLWDIR  163 (338)
T ss_pred             cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC---ccccCCeEEEecCCCce-EEEEeec
Confidence            355566666666677779999999999999999877543 335654443211   11223344444443322 2333332


Q ss_pred             -----CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242         329 -----DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       329 -----~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s  403 (540)
                           ..+..  .....++.|..++.. +.+|+-|+.|++||++.++....+               .||.+.|+.+..+
T Consensus       164 ~k~~~~t~~~--kyqltAv~f~d~s~q-v~sggIdn~ikvWd~r~~d~~~~l---------------sGh~DtIt~lsls  225 (338)
T KOG0265|consen  164 KKEAIKTFEN--KYQLTAVGFKDTSDQ-VISGGIDNDIKVWDLRKNDGLYTL---------------SGHADTITGLSLS  225 (338)
T ss_pred             ccchhhcccc--ceeEEEEEecccccc-eeeccccCceeeeccccCcceEEe---------------ecccCceeeEEec
Confidence                 11222  233677788888886 689999999999999999988888               8999999999999


Q ss_pred             cCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC----CEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         404 ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ----PVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       404 p~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~----~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      |    +|.++.+-+.|.++++||++.....       ..++..+.+|..    ....++|+|++..+.+|+.|..+++|+
T Consensus       226 ~----~gs~llsnsMd~tvrvwd~rp~~p~-------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd  294 (338)
T KOG0265|consen  226 R----YGSFLLSNSMDNTVRVWDVRPFAPS-------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWD  294 (338)
T ss_pred             c----CCCccccccccceEEEEEecccCCC-------CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEee
Confidence            9    9999999999999999998863321       346788887743    456789999999999999999999998


Q ss_pred             CCC-cEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEE
Q psy1242         480 TFG-DLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAF  520 (540)
Q Consensus       480 ~~g-~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw  520 (540)
                      .+. .++..+.+|.+  .|.+++|+|...+|.+ ++|.+|++=
T Consensus       295 ~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  295 TTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             cccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCceeEee
Confidence            855 78999999998  8899999999999887 678888763

>KOG0306|consensus

Probab=99.85  E-value=2.5e-20  Score=193.97  Aligned_cols=214  Identities=21%  Similarity=0.271  Sum_probs=169.9

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      +|-.++-...+.++...++|+|+|.+|++|+........        +.....+++.                ..+.+  
T Consensus       452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~--------gt~~k~lsl~----------------~~rtL--  505 (888)
T KOG0306|consen  452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP--------GTQKKVLSLK----------------HTRTL--  505 (888)
T ss_pred             ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC--------cccceeeeec----------------cceEE--
Confidence            344444455566667779999999999999964211000        0000000010                11111  


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                          .+.-.+.|+.+||||++ +|.+--|++|+||-+++-+..-.+               .||.-+|.|+..||    |
T Consensus       506 ----el~ddvL~v~~Spdgk~-LaVsLLdnTVkVyflDtlKFflsL---------------YGHkLPV~smDIS~----D  561 (888)
T KOG0306|consen  506 ----ELEDDVLCVSVSPDGKL-LAVSLLDNTVKVYFLDTLKFFLSL---------------YGHKLPVLSMDISP----D  561 (888)
T ss_pred             ----eccccEEEEEEcCCCcE-EEEEeccCeEEEEEecceeeeeee---------------cccccceeEEeccC----C
Confidence                11223899999999995 799999999999999998887777               89999999999999    9


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      ++.++|||.|.+|++|-++-           +.|-..+.+|.+.|.++.|.|+...+.+|+.|+.|+-|+. .-+.++++
T Consensus       562 SklivTgSADKnVKiWGLdF-----------GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L  630 (888)
T KOG0306|consen  562 SKLIVTGSADKNVKIWGLDF-----------GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL  630 (888)
T ss_pred             cCeEEeccCCCceEEecccc-----------chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence            99999999999999999876           5688899999999999999999999999999999999986 67889999


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcE
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNR  526 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~  526 (540)
                      .+|..  .|++++.+|+|.+++++ .|..|++|......
T Consensus       631 ~~H~~--ev~cLav~~~G~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  631 DGHHS--EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             ccchh--eeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence            99988  78999999999999995 57999999866433

>KOG0772|consensus

Probab=99.85  E-value=2.1e-20  Score=187.35  Aligned_cols=247  Identities=13%  Similarity=0.138  Sum_probs=164.9

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCccc--CCCCcCCCCCCCCCccccCCC--CeeeccCCCCCCccc------c
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ--SPSYAETPGSPPGNLPLTLDP--ILTHPTSNNNAPVPK------R  325 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~--~~~~~~~v~~~~~~~~~s~D~--~l~~~g~~~~~~~~~------~  325 (540)
                      +.-.+.+++..++|+|.|.+|++||..+.....  .....-.-....+.+.+|..+  .++++|+.......+      .
T Consensus       171 sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e  250 (641)
T KOG0772|consen  171 SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE  250 (641)
T ss_pred             EEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence            334555666679999999999999987644111  111111113334566777665  445555321111100      0


Q ss_pred             c------cCCC-cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242         326 H------LGDN-FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT  398 (540)
Q Consensus       326 ~------~~~~-~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt  398 (540)
                      .      +... ..+++....+|-.|+|+.+..+.+++.||++||||+...+....+.-+..         -.+..-.++
T Consensus       251 ~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~---------~~g~Rv~~t  321 (641)
T KOG0772|consen  251 FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP---------AGGKRVPVT  321 (641)
T ss_pred             eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc---------CCCcccCce
Confidence            0      1111 11233445778888999988899999999999999986554332211111         024455789


Q ss_pred             EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC--CEEEEEEcCCCCEEEEEeCCCcEE
Q psy1242         399 CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ--PVTSVAISAELGLVVSGSQLGPVL  476 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasgs~Dg~v~  476 (540)
                      +++|++    ||.+|++|+.||+|.+|+.......        .....-.+|..  .|+||+||+||++|+|-+.|++++
T Consensus       322 sC~~nr----dg~~iAagc~DGSIQ~W~~~~~~v~--------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  322 SCAWNR----DGKLIAAGCLDGSIQIWDKGSRTVR--------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             eeecCC----CcchhhhcccCCceeeeecCCcccc--------cceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence            999999    9999999999999999997543321        12333467877  999999999999999999999999


Q ss_pred             EEeC--CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-------CCeEEEEecC
Q psy1242         477 VHTT--FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-------RGHIAAFTMN  523 (540)
Q Consensus       477 iw~~--~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-------dg~I~lw~~~  523 (540)
                      +|+.  -.+++.+..+-....+-+.++|||+.++|++|.       .|.+.+||.-
T Consensus       390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence            9976  345666655544433567899999999999974       3678877754

>KOG0281|consensus

Probab=99.85  E-value=3.1e-21  Score=184.87  Aligned_cols=220  Identities=20%  Similarity=0.237  Sum_probs=162.9

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCC----CCCCccccCCCCeeeccCCCCC-CccccccCCCcC
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGS----PPGNLPLTLDPILTHPTSNNNA-PVPKRHLGDNFS  332 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~----~~~~~~~s~D~~l~~~g~~~~~-~~~~~~~~~~~~  332 (540)
                      .++.+.-+++|||.|.||++||.+++... ....|.+.|..    .+..+++|.|..+.+..-.... ...++.+.++..
T Consensus       242 CLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA  321 (499)
T KOG0281|consen  242 CLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA  321 (499)
T ss_pred             eeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence            45556668999999999999999988754 45567766632    2223566677666543211111 112222222222


Q ss_pred             cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                         .  ++.+.|  |.+ +|++++.|.+|++|++.+++.+.++               .||+..|.|+.+      .|++
T Consensus       322 ---a--VNvVdf--d~k-yIVsASgDRTikvW~~st~efvRtl---------------~gHkRGIAClQY------r~rl  372 (499)
T KOG0281|consen  322 ---A--VNVVDF--DDK-YIVSASGDRTIKVWSTSTCEFVRTL---------------NGHKRGIACLQY------RDRL  372 (499)
T ss_pred             ---h--eeeecc--ccc-eEEEecCCceEEEEeccceeeehhh---------------hcccccceehhc------cCeE
Confidence               2  444433  566 5899999999999999999999988               899999999987      6799


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc--------
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD--------  483 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~--------  483 (540)
                      +++||.|.+|++||+..           +.++..+.||+.-|.|+.|  +.+.++||..||+|+||+. ++.        
T Consensus       373 vVSGSSDntIRlwdi~~-----------G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~  439 (499)
T KOG0281|consen  373 VVSGSSDNTIRLWDIEC-----------GACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPAST  439 (499)
T ss_pred             EEecCCCceEEEEeccc-----------cHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccc
Confidence            99999999999999876           6799999999999999999  4578999999999999975 221        


Q ss_pred             -EEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         484 -LLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       484 -~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                       ++.++..|.+  .|..+.|. +-++++++.|.+|.+||..
T Consensus       440 ~Cl~~lv~hsg--RVFrLQFD-~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  440 LCLRTLVEHSG--RVFRLQFD-EFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             hHHHhhhhccc--eeEEEeec-ceEEEeccCCCeEEEEEcC
Confidence             4556666777  67888883 3345556779999999965

>KOG0292|consensus

Probab=99.84  E-value=1.2e-19  Score=191.66  Aligned_cols=237  Identities=16%  Similarity=0.176  Sum_probs=181.3

Q ss_pred             EEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCC-----ccccccCCCcCcceeeEEE
Q psy1242         267 TVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP-----VPKRHLGDNFSQKLRVRHN  340 (540)
Q Consensus       267 lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~-----~~~~~~~~~~~~~~~v~~~  340 (540)
                      ++++=..++|++||..-+.+.. .-.|.++|+.    +.|.+..-+.++|+++...     ..++.+-....+---  +.
T Consensus        24 ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRg----v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY--VR   97 (1202)
T KOG0292|consen   24 ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRG----VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--VR   97 (1202)
T ss_pred             EEEeecCceeeeehhhhhhHHhhhhccCCccce----eeecCCCCeEEecCCccEEEEEecccceehhhhccccce--eE
Confidence            6666778899999987655444 3468888764    5688888888877665444     233333222222222  56


Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC  420 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg  420 (540)
                      .+.|++.-.+ |.++|.|-+||||+.++++++..+               .||...|.|..|+|    ....++|+|.|-
T Consensus        98 t~~FHheyPW-IlSASDDQTIrIWNwqsr~~iavl---------------tGHnHYVMcAqFhp----tEDlIVSaSLDQ  157 (1202)
T KOG0292|consen   98 TVFFHHEYPW-ILSASDDQTIRIWNWQSRKCIAVL---------------TGHNHYVMCAQFHP----TEDLIVSASLDQ  157 (1202)
T ss_pred             EeeccCCCce-EEEccCCCeEEEEeccCCceEEEE---------------ecCceEEEeeccCC----ccceEEEecccc
Confidence            6677999997 689999999999999999999999               89999999999999    888999999999


Q ss_pred             cEEEEEcCCCcccccCCC------------------CCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--
Q psy1242         421 TVLLWHWNARTQSIVGET------------------DTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--  480 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~------------------~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--  480 (540)
                      ||||||+......-...+                  ...-..+.+.||+..|+-++|+|...+|+||+.|..|++|-.  
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence            999999865322111100                  011234678999999999999999999999999999999954  


Q ss_pred             CCc-EEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         481 FGD-LLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       481 ~g~-~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      +.. .+-+.++|-+  .|.++-|+|...++++ |+|++|++||++ ...+.++.
T Consensus       238 tKaWEvDtcrgH~n--nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  238 TKAWEVDTCRGHYN--NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             ccceeehhhhcccC--CcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence            222 3567888988  7899999999888888 789999999998 55566664

>KOG0276|consensus

Probab=99.84  E-value=4.9e-20  Score=188.33  Aligned_cols=147  Identities=19%  Similarity=0.211  Sum_probs=127.4

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .+.+++|+|.....+|+++-|++|+||++.+..+..++               +||...|+||.+-+.  +|.-+|+||+
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl---------------~gHekGVN~Vdyy~~--gdkpylIsga  204 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL---------------EGHEKGVNCVDYYTG--GDKPYLISGA  204 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee---------------eccccCcceEEeccC--CCcceEEecC
Confidence            37888899987778999999999999999887777777               899999999999871  1345999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFAS  496 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~  496 (540)
                      .|.+++|||.++           ..|++++.||...|.+++|+|...+++|||.||+++||.. +-++..++....+  .
T Consensus       205 DD~tiKvWDyQt-----------k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--R  271 (794)
T KOG0276|consen  205 DDLTIKVWDYQT-----------KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--R  271 (794)
T ss_pred             CCceEEEeecch-----------HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--e
Confidence            999999999988           4699999999999999999999999999999999999954 6666677776666  7


Q ss_pred             ceEEEEeeCCCEEEEecC
Q psy1242         497 PESVVMSREGVIVVNYER  514 (540)
Q Consensus       497 v~~l~fspdg~~l~s~~d  514 (540)
                      +++++-.+.++.++.|.|
T Consensus       272 vW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  272 VWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             EEEEeecCCCCeEEEecc
Confidence            899998888877777654

>KOG0318|consensus

Probab=99.84  E-value=4.4e-19  Score=178.46  Aligned_cols=267  Identities=12%  Similarity=0.147  Sum_probs=183.8

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCC--------CccccCCCCeeeccCCCCCC
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPG--------NLPLTLDPILTHPTSNNNAP  321 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~--------~~~~s~D~~l~~~g~~~~~~  321 (540)
                      .|...+=.....+++.-++|+|+|.++|+||..+............+.+..-        .++.|.+|++-.-.  ....
T Consensus       233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln--~~d~  310 (603)
T KOG0318|consen  233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLN--PSDP  310 (603)
T ss_pred             CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEec--ccCC
Confidence            4555555566777888899999999999999998876666555544433322        23444444333211  1111


Q ss_pred             ccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEE-ecccceeee----------------
Q psy1242         322 VPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQII-FGHYGVVTS----------------  384 (540)
Q Consensus       322 ~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l-~~~~~~v~~----------------  384 (540)
                      .....+.++..     .+.+++.++|+++ |.+|+.||.|.-|+..+|..-+.. ++|...|.+                
T Consensus       311 ~~~~~i~GHnK-----~ITaLtv~~d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd  384 (603)
T KOG0318|consen  311 SVLKVISGHNK-----SITALTVSPDGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD  384 (603)
T ss_pred             Chhheeccccc-----ceeEEEEcCCCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC
Confidence            12222222222     2678888999986 799999999999999877543222 233333211                


Q ss_pred             -----------------------------------------eeEEEeecc--------CcceEEEEeccCccCCCcEEEE
Q psy1242         385 -----------------------------------------RIVQIIFGH--------YGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       385 -----------------------------------------~~~~~l~~h--------~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                                                               .-+..|+.+        .-.+++++++|    +++.++.
T Consensus       385 ~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~----~~~~vaV  460 (603)
T KOG0318|consen  385 TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP----DGSEVAV  460 (603)
T ss_pred             eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC----CCCEEEE
Confidence                                                     111222222        23467899999    9999999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEE--EEecCCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLL--RSLDPPSG  493 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~--~~l~~~~~  493 (540)
                      |+.|+.|.|+.+....         ......+..|.++|+++++|||+.+||+|...+.+.+|+.....+  ....-|..
T Consensus       461 GG~Dgkvhvysl~g~~---------l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta  531 (603)
T KOG0318|consen  461 GGQDGKVHVYSLSGDE---------LKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA  531 (603)
T ss_pred             ecccceEEEEEecCCc---------ccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence            9999999999987633         233456678999999999999999999999999999998743333  23334666


Q ss_pred             CCCceEEEEeeCCCEEEEec-CCeEEEEecC--CcEEEeee-cCCcceec
Q psy1242         494 FASPESVVMSREGVIVVNYE-RGHIAAFTMN--GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~--g~~l~~~~-~~~~V~~v  539 (540)
                        .|.+++|+|+...+|+|+ |-.|.+|+++  .+.+.... |...|+.|
T Consensus       532 --kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v  579 (603)
T KOG0318|consen  532 --KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSV  579 (603)
T ss_pred             --eEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeE
Confidence              789999999999999976 8999999987  45544443 66667665

>KOG0282|consensus

Probab=99.84  E-value=7e-21  Score=189.80  Aligned_cols=254  Identities=11%  Similarity=0.077  Sum_probs=182.2

Q ss_pred             eecccceee-ecCCcEEEEEccCcceEEEEcCCCCC--cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242         251 HVTANTYVT-LHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL  327 (540)
Q Consensus       251 ~~~~~~~~~-~~~~~~~lvs~s~D~tv~~W~~~~~~--~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~  327 (540)
                      |...+++.+ ++....+++|+|.|+.|++|+..+..  ...+.+|...|.    .+.|+.+|.-+.+++-+... ..+.+
T Consensus       213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vr----d~~~s~~g~~fLS~sfD~~l-KlwDt  287 (503)
T KOG0282|consen  213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVR----DASFNNCGTSFLSASFDRFL-KLWDT  287 (503)
T ss_pred             CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhh----hhhccccCCeeeeeecceee-eeecc
Confidence            333444444 44478899999999999999998733  445668887775    35577777655554322111 11111


Q ss_pred             CC-CcC--cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         328 GD-NFS--QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       328 ~~-~~~--~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      .. ...  -...-...|+.+.||+..++.+|+.|+.|+.||+++++.++.+               ..|.+.|..+.|-+
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---------------d~hLg~i~~i~F~~  352 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---------------DRHLGAILDITFVD  352 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---------------HhhhhheeeeEEcc
Confidence            10 000  0111126788999999778999999999999999999988888               88999999999999


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC---
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT-LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT---  480 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~---  480 (540)
                          +|+++++.+.|++++||+.+..-           ++.. ...+.-...||..+|.+.+++.-+.|..+.++..   
T Consensus       353 ----~g~rFissSDdks~riWe~~~~v-----------~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~  417 (503)
T KOG0282|consen  353 ----EGRRFISSSDDKSVRIWENRIPV-----------PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP  417 (503)
T ss_pred             ----CCceEeeeccCccEEEEEcCCCc-----------cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence                99999999999999999987621           2222 2223335678999999999999999999988743   


Q ss_pred             -CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         481 -FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       481 -~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                       .....+.+.+|....--..+.|||||.+|++|+ +|.+.+||.+ .+++..+. |++.+..+
T Consensus       418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v  480 (503)
T KOG0282|consen  418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV  480 (503)
T ss_pred             cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence             223345667775433457899999999999975 8999999998 55555555 65655443

>KOG0313|consensus

Probab=99.84  E-value=1.2e-19  Score=176.13  Aligned_cols=248  Identities=15%  Similarity=0.126  Sum_probs=175.4

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCC---CeeeccCCCCCCccccccCCC--------cCcc
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDP---ILTHPTSNNNAPVPKRHLGDN--------FSQK  334 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~---~l~~~g~~~~~~~~~~~~~~~--------~~~~  334 (540)
                      -++|++.|+++|+|+..+.......+|.+.+.+..-   ..++.   .++.++  .+.....+++...        ...+
T Consensus       117 ~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~---v~~n~~~~~fvsas--~Dqtl~Lw~~~~~~~~~~~~~~~~G  191 (423)
T KOG0313|consen  117 WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAW---VIKNSSSCLFVSAS--MDQTLRLWKWNVGENKVKALKVCRG  191 (423)
T ss_pred             eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEE---EecCCccceEEEec--CCceEEEEEecCchhhhhHHhHhcc
Confidence            388999999999999988777777888877754332   22222   233333  2222222322211        1113


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccc-----------eeeeeeEEEeeccCcceEEEEec
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYG-----------VVTSRIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~-----------~v~~~~~~~l~~h~~~Vt~l~~s  403 (540)
                      ....+-+++..++|.. +++|++|.+|+||+..+ .....++..+.           .-....+.++.||.++|.+|.|+
T Consensus       192 Hk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~  269 (423)
T KOG0313|consen  192 HKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVET-DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS  269 (423)
T ss_pred             cccceeEEEecCCCCe-EEeecccceeeecccCC-CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence            3344788888999996 79999999999999332 11112211111           00114567789999999999998


Q ss_pred             cCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC---
Q psy1242         404 ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT---  480 (540)
Q Consensus       404 p~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~---  480 (540)
                      +     ...+.++|.|.+|+.||+.+           +..+..+.+ ...++|++.+|...+|++||.|..+++|+.   
T Consensus       270 d-----~~v~yS~SwDHTIk~WDlet-----------g~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  270 D-----ATVIYSVSWDHTIKVWDLET-----------GGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             C-----CCceEeecccceEEEEEeec-----------ccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            5     56899999999999999987           345555554 456899999999999999999999999975   


Q ss_pred             CCcE-EEEecCCCCCCCceEEEEeeCCCEEEE--ecCCeEEEEecC-Cc-EEEeee-cCCcceec
Q psy1242         481 FGDL-LRSLDPPSGFASPESVVMSREGVIVVN--YERGHIAAFTMN-GN-RLRHES-HNDNLQKT  539 (540)
Q Consensus       481 ~g~~-~~~l~~~~~~~~v~~l~fspdg~~l~s--~~dg~I~lw~~~-g~-~l~~~~-~~~~V~~v  539 (540)
                      .|.. ..++.+|..  -|.++.|+|...++++  +.|+++++||+. .+ .|..+. |++.|.|+
T Consensus       333 ~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v  395 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKN--WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV  395 (423)
T ss_pred             CCceeEEeeecchh--hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence            3444 578999999  5799999998776554  359999999987 33 555554 88888775

>KOG0296|consensus

Probab=99.84  E-value=1.6e-19  Score=174.57  Aligned_cols=255  Identities=15%  Similarity=0.134  Sum_probs=182.0

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCc-ce-
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ-KL-  335 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~-~~-  335 (540)
                      .+.+....++|+|.|....+|+..++.. ....+|+++|.    +..||.|++++++|+-+... ..++....... .+ 
T Consensus        71 sl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt----~~~FshdgtlLATGdmsG~v-~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   71 SLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT----CCSFSHDGTLLATGDMSGKV-LVFKVSTGGEQWKLD  145 (399)
T ss_pred             EeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE----EEEEccCceEEEecCCCccE-EEEEcccCceEEEee
Confidence            3344455599999999999999988773 44567997776    57799999999998544333 22222211110 00 


Q ss_pred             -ee-EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         336 -RV-RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       336 -~v-~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                       .+ ...-+.|+|-+. +|++|+.||++.+|.+.++...+.+               .||..+++|=.|.|    +|+.+
T Consensus       146 ~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~---------------~Gh~~~ct~G~f~p----dGKr~  205 (399)
T KOG0296|consen  146 QEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVM---------------SGHNSPCTCGEFIP----DGKRI  205 (399)
T ss_pred             cccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEe---------------cCCCCCcccccccC----CCceE
Confidence             01 134566799888 6899999999999999987777777               89999999999999    99999


Q ss_pred             EEEeCCCcEEEEEcCCCccccc-C----------------------C---------CCCCcceEEec--------cCCCC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIV-G----------------------E---------TDTPTPRATLT--------GHEQP  453 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~-~----------------------~---------~~~~~~~~~l~--------~h~~~  453 (540)
                      ++|..||+|++|+..+.+.... .                      +         ...++.+....        .++..
T Consensus       206 ~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~  285 (399)
T KOG0296|consen  206 LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL  285 (399)
T ss_pred             EEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence            9999999999999876542210 0                      0         01122222222        23333


Q ss_pred             EEE---EEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEe
Q psy1242         454 VTS---VAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       454 V~~---v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~  529 (540)
                      +.|   +.+|..-.+.|+|+-||+|.||+.....+|..-.|..  +|..+.|-++..++++..+|.|+.||.. |+++-.
T Consensus       286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~--~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~  363 (399)
T KOG0296|consen  286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED--GVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFT  363 (399)
T ss_pred             hhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC--ceEEEEEcCcchheeeccCceEEeeeccccceEEE
Confidence            344   4455566788999999999999886666666666776  6899999984444444679999999987 888888


Q ss_pred             ee-cCCcceecC
Q psy1242         530 ES-HNDNLQKTA  540 (540)
Q Consensus       530 ~~-~~~~V~~va  540 (540)
                      +. |...|.+++
T Consensus       364 y~GH~~~Il~f~  375 (399)
T KOG0296|consen  364 YTGHQMGILDFA  375 (399)
T ss_pred             EecCchheeEEE
Confidence            86 988888764

>PTZ00420 coronin; Provisional

Probab=99.83  E-value=1.4e-18  Score=186.26  Aligned_cols=170  Identities=7%  Similarity=0.022  Sum_probs=126.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|+|++..++++|+.|++|+|||+++++.+..+               . |...|++++|+|    +|.+|++++.
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i---------------~-~~~~V~Slswsp----dG~lLat~s~  187 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI---------------N-MPKKLSSLKWNI----KGNLLSGTCV  187 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE---------------e-cCCcEEEEEECC----CCCEEEEEec
Confidence            7888999999887889999999999999998876665               3 567899999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEE-----EEEcCCCCEEEEEeCCC----cEEEEeCC--CcEEEE
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTS-----VAISAELGLVVSGSQLG----PVLVHTTF--GDLLRS  487 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-----v~~spdg~~lasgs~Dg----~v~iw~~~--g~~~~~  487 (540)
                      |++|+|||++.           ++.+..+.+|.+.+.+     ..|++++.+|++++.|+    .|+||+..  ++++..
T Consensus       188 D~~IrIwD~Rs-----------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~  256 (568)
T PTZ00420        188 GKHMHIIDPRK-----------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT  256 (568)
T ss_pred             CCEEEEEECCC-----------CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence            99999999886           4567788899876543     33568889999988774    79999863  566665


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEee---ecCCcceec
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHE---SHNDNLQKT  539 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~~---~~~~~V~~v  539 (540)
                      +..+.....+......++|.++++| +|+.|++|++....+..+   .+..++.++
T Consensus       257 ~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~  312 (568)
T PTZ00420        257 MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSF  312 (568)
T ss_pred             EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccce
Confidence            5443331122223334568877775 799999999874433333   344444443

>KOG0315|consensus

Probab=99.83  E-value=9.2e-19  Score=161.54  Aligned_cols=221  Identities=18%  Similarity=0.148  Sum_probs=164.8

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN  330 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~  330 (540)
                      |..-++.+.|+.++.-..|+|.|+++|+||+-.........|.    ++.+.+...++-.-+.+|+.... ...+.++..
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~----spVn~vvlhpnQteLis~dqsg~-irvWDl~~~  156 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN----SPVNTVVLHPNQTELISGDQSGN-IRVWDLGEN  156 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC----CCcceEEecCCcceEEeecCCCc-EEEEEccCC
Confidence            3344677888899999999999999999998765544444454    34445566666555555532222 344444433


Q ss_pred             c-----CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242         331 F-----SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC  405 (540)
Q Consensus       331 ~-----~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~  405 (540)
                      .     -+.-...+..+++.|||.. ++++...|++.+|++-++.....+         ..+..++.|.+.++.+.+|| 
T Consensus       157 ~c~~~liPe~~~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l---------~P~~k~~ah~~~il~C~lSP-  225 (311)
T KOG0315|consen  157 SCTHELIPEDDTSIQSLTVMPDGSM-LAAANNKGNCYVWRLLNHQTASEL---------EPVHKFQAHNGHILRCLLSP-  225 (311)
T ss_pred             ccccccCCCCCcceeeEEEcCCCcE-EEEecCCccEEEEEccCCCccccc---------eEhhheecccceEEEEEECC-
Confidence            1     1222345778888999995 688888999999999765443333         23344589999999999999 


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcE
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDL  484 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~  484 (540)
                         |+++|+++|.|.+|+||+.+..          .+.-..+.+|...+..++||.||++|++|+.|+.+++|+. .++.
T Consensus       226 ---d~k~lat~ssdktv~iwn~~~~----------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~  292 (311)
T KOG0315|consen  226 ---DVKYLATCSSDKTVKIWNTDDF----------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE  292 (311)
T ss_pred             ---CCcEEEeecCCceEEEEecCCc----------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence               9999999999999999998762          2445678999999999999999999999999999999976 8899


Q ss_pred             EEEecCCCCCCCceEEEE
Q psy1242         485 LRSLDPPSGFASPESVVM  502 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~f  502 (540)
                      ++...+|..  ...+++.
T Consensus       293 v~qy~gh~K--~~vc~~l  308 (311)
T KOG0315|consen  293 VRQYQGHHK--AAVCVAL  308 (311)
T ss_pred             eeecCCccc--ccEEEEe
Confidence            999998877  3445544

>KOG0275|consensus

Probab=99.83  E-value=3.1e-21  Score=183.31  Aligned_cols=175  Identities=17%  Similarity=0.237  Sum_probs=149.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +-|..|||||++ +++|+.||-|.+|+..+|+..+.++-..       ...+--+.++|.|++|+.    |...+++|+.
T Consensus       216 ~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQA-------qd~fMMmd~aVlci~FSR----DsEMlAsGsq  283 (508)
T KOG0275|consen  216 VECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQA-------QDNFMMMDDAVLCISFSR----DSEMLASGSQ  283 (508)
T ss_pred             hhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhh-------hcceeecccceEEEeecc----cHHHhhccCc
Confidence            678889999997 6999999999999999998776552111       112245789999999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEE-eCCCcEEEEecCCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQLGPVLVH-TTFGDLLRSLDPPSGFAS  496 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~Dg~v~iw-~~~g~~~~~l~~~~~~~~  496 (540)
                      ||.|++|.+.+           +.|++.+. +|...|+|+.||.|+..++|++.|.+++|+ ..+|++++.+++|..  .
T Consensus       284 DGkIKvWri~t-----------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS--y  350 (508)
T KOG0275|consen  284 DGKIKVWRIET-----------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS--Y  350 (508)
T ss_pred             CCcEEEEEEec-----------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc--c
Confidence            99999999987           56888885 899999999999999999999999999999 559999999999998  7


Q ss_pred             ceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee---cCCccee
Q psy1242         497 PESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES---HNDNLQK  538 (540)
Q Consensus       497 v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~---~~~~V~~  538 (540)
                      |+.+.|++||..+++ ++||+|++|+.. ++.+.++.   .+-+|+.
T Consensus       351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vns  397 (508)
T KOG0275|consen  351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNS  397 (508)
T ss_pred             ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccccee
Confidence            899999999999888 679999999976 77776664   4444443

>KOG0645|consensus

Probab=99.83  E-value=4.2e-19  Score=165.70  Aligned_cols=171  Identities=20%  Similarity=0.192  Sum_probs=140.0

Q ss_pred             EEEEEEecC-CCEEEEEEecCCcEEEEEccCCeE---EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         339 HNCFVTTVD-SRFLLACGFWDNSFRVFSTDNARI---VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       339 ~~~~~~spd-g~~llasgs~Dgsv~iwd~~~g~~---~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      +-.++|+|- |. +||+++.|+.||||++..+..   ...+.              .+|+..|.+++|+|    .|++|+
T Consensus        17 ~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld--------------~~hkrsVRsvAwsp----~g~~La   77 (312)
T KOG0645|consen   17 VWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLD--------------DGHKRSVRSVAWSP----HGRYLA   77 (312)
T ss_pred             EEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEecc--------------ccchheeeeeeecC----CCcEEE
Confidence            556677898 77 799999999999999885432   22221              57999999999999    899999


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC----CCcEEEEecC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT----FGDLLRSLDP  490 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~----~g~~~~~l~~  490 (540)
                      +||.|+++.||.-...         ..+++.++.||++.|.|++||++|.+||+||+|+.|.||-.    .-++...|+.
T Consensus        78 ~aSFD~t~~Iw~k~~~---------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   78 SASFDATVVIWKKEDG---------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             EeeccceEEEeecCCC---------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            9999999999975432         25789999999999999999999999999999999999943    2357889999


Q ss_pred             CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-Cc---EEEeee-cCCcceec
Q psy1242         491 PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GN---RLRHES-HNDNLQKT  539 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~---~l~~~~-~~~~V~~v  539 (540)
                      |..  .|..+.|+|...+|++ +-|++|++|.-. +.   .+.++. |...|.++
T Consensus       149 Htq--DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~  201 (312)
T KOG0645|consen  149 HTQ--DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSL  201 (312)
T ss_pred             ccc--cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEE
Confidence            988  7899999999999998 459999999754 32   344553 66666665

>KOG0310|consensus

Probab=99.83  E-value=3.2e-19  Score=178.33  Aligned_cols=250  Identities=17%  Similarity=0.186  Sum_probs=180.7

Q ss_pred             ceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeec
Q psy1242         236 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHP  314 (540)
Q Consensus       236 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~  314 (540)
                      ..+-++.|+|..|.               -..+|+|  ..+.+++..+..... ...|+..|.    ...|-.||.|+++
T Consensus        27 ~~vssl~fsp~~P~---------------d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~----s~~fR~DG~Llaa   85 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPY---------------DFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVY----SVDFRSDGRLLAA   85 (487)
T ss_pred             CcceeEecCCCCCC---------------ceEEecc--cEEEEEecchhhhhhhHHhhcccee----EEEeecCCeEEEc
Confidence            34556667766553               1234444  356677765544332 334655444    4568899999999


Q ss_pred             cCCCCCC-----ccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEE
Q psy1242         315 TSNNNAP-----VPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQI  389 (540)
Q Consensus       315 g~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~  389 (540)
                      |+..+.+     ..+-.++....+..+  +..+.|+|++..++++|+.|+.+++||+.++..+..+              
T Consensus        86 GD~sG~V~vfD~k~r~iLR~~~ah~ap--v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l--------------  149 (487)
T KOG0310|consen   86 GDESGHVKVFDMKSRVILRQLYAHQAP--VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL--------------  149 (487)
T ss_pred             cCCcCcEEEeccccHHHHHHHhhccCc--eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe--------------
Confidence            8644333     111122222333334  4555668998889999999999999999988864456              


Q ss_pred             eeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy1242         390 IFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       390 l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg  469 (540)
                       .+|++.|.|.+|+|.   .+..++|||.||+|++||++..+          ..+..+ .|..+|..+.+-|.|.+||++
T Consensus       150 -~~htDYVR~g~~~~~---~~hivvtGsYDg~vrl~DtR~~~----------~~v~el-nhg~pVe~vl~lpsgs~iasA  214 (487)
T KOG0310|consen  150 -SGHTDYVRCGDISPA---NDHIVVTGSYDGKVRLWDTRSLT----------SRVVEL-NHGCPVESVLALPSGSLIASA  214 (487)
T ss_pred             -cCCcceeEeeccccC---CCeEEEecCCCceEEEEEeccCC----------ceeEEe-cCCCceeeEEEcCCCCEEEEc
Confidence             899999999999994   67789999999999999988732          234444 699999999999999999998


Q ss_pred             eCCCcEEEEeCC-C-cEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242         470 SQLGPVLVHTTF-G-DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNLQKTA  540 (540)
Q Consensus       470 s~Dg~v~iw~~~-g-~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~va  540 (540)
                      + ...|+|||.+ | +.+..+..|..  .|+|+++..++..|+++ -|+.+++|++. -+.+......++|.+|+
T Consensus       215 g-Gn~vkVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsia  286 (487)
T KOG0310|consen  215 G-GNSVKVWDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIA  286 (487)
T ss_pred             C-CCeEEEEEecCCceehhhhhcccc--eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEE
Confidence            7 4578999874 4 44555554766  78999999999998885 59999999955 66777777888887764

>KOG0301|consensus

Probab=99.83  E-value=1.9e-19  Score=186.30  Aligned_cols=236  Identities=18%  Similarity=0.239  Sum_probs=176.2

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccC---CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC--CCc--Ccce
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQS---PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--DNF--SQKL  335 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~---~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~--~~~--~~~~  335 (540)
                      +.+.++++|+|+++++|..........   .+|.+.+......+. +..+.++..+.+  .........  .++  -..+
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D--~~i~v~~~~~~~P~~~LkgH  100 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMD--TTIIVFKLSQAEPLYTLKGH  100 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeeccc--ceEEEEecCCCCchhhhhcc
Confidence            345688999999999999866553332   223333222111122 333445544422  112222221  111  1223


Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee------------------------eeEEEee
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS------------------------RIVQIIF  391 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~------------------------~~~~~l~  391 (540)
                      ...++|++...++.  +++||||.++++|-.  +++...+.+|.+.|++                        ++++++.
T Consensus       101 ~snVC~ls~~~~~~--~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~  176 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGT--LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFS  176 (745)
T ss_pred             ccceeeeecCCcCc--eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCchhhhhc
Confidence            33478887777776  689999999999975  5666778899988864                        5678889


Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      ||.+.|..+++-+     +..++|++.||.|++|++.            ++++..+.||++-|.+++...+++.++|++.
T Consensus       177 gHtD~VRgL~vl~-----~~~flScsNDg~Ir~w~~~------------ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE  239 (745)
T KOG0301|consen  177 GHTDCVRGLAVLD-----DSHFLSCSNDGSIRLWDLD------------GEVLLEMHGHTNFVYSISMALSDGLIVSTGE  239 (745)
T ss_pred             cchhheeeeEEec-----CCCeEeecCCceEEEEecc------------CceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence            9999999999986     4578999999999999985            4688999999999999998888899999999


Q ss_pred             CCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCc
Q psy1242         472 LGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  525 (540)
Q Consensus       472 Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~  525 (540)
                      |++++||... .+.+.+..+..  .|+++.+-++|.+++.++||.|++|+.+-.
T Consensus       240 DrtlriW~~~-e~~q~I~lPtt--siWsa~~L~NgDIvvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  240 DRTLRIWKKD-ECVQVITLPTT--SIWSAKVLLNGDIVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             CceEEEeecC-ceEEEEecCcc--ceEEEEEeeCCCEEEeccCceEEEEEeccc
Confidence            9999999765 88888888877  689999999999999999999999997743

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.83  E-value=1.2e-18  Score=198.46  Aligned_cols=221  Identities=14%  Similarity=0.105  Sum_probs=162.6

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN  330 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~  330 (540)
                      |...+....+.+++..++|++.|++|++|+...........+.               +..              .+.. 
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~---------------~~~--------------~~~~-  531 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHY---------------PVV--------------ELAS-  531 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccccc---------------ceE--------------Eecc-
Confidence            5555667778888888999999999999996431000000000               000              0000 


Q ss_pred             cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                         ..  .+.+++|++....+|++|+.||+|++||+.+++.+..+               .+|.+.|++++|+|.   ++
T Consensus       532 ---~~--~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~---------------~~H~~~V~~l~~~p~---~~  588 (793)
T PLN00181        532 ---RS--KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM---------------KEHEKRVWSIDYSSA---DP  588 (793)
T ss_pred             ---cC--ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe---------------cCCCCCEEEEEEcCC---CC
Confidence               11  24567777754335899999999999999998888877               789999999999973   68


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEeC-CCc-EEEE
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAIS-AELGLVVSGSQLGPVLVHTT-FGD-LLRS  487 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s-pdg~~lasgs~Dg~v~iw~~-~g~-~~~~  487 (540)
                      .+|+||+.|++|++||++.           +.++..+..+ ..|.++.|+ +++.++++|+.||.|++|+. +++ .+..
T Consensus       589 ~~L~Sgs~Dg~v~iWd~~~-----------~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~  656 (793)
T PLN00181        589 TLLASGSDDGSVKLWSINQ-----------GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT  656 (793)
T ss_pred             CEEEEEcCCCEEEEEECCC-----------CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE
Confidence            8999999999999999876           3456666654 579999995 57899999999999999986 443 5677


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-------CcEEEeee-cCCcceec
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-------GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-------g~~l~~~~-~~~~V~~v  539 (540)
                      +.+|..  .|.+++|. ++.+|++ +.|++|++||+.       ++.+.++. |...++++
T Consensus       657 ~~~h~~--~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v  714 (793)
T PLN00181        657 MIGHSK--TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV  714 (793)
T ss_pred             ecCCCC--CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence            888887  78999997 5666666 678999999985       24555554 66655554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.83  E-value=1.4e-18  Score=169.84  Aligned_cols=224  Identities=20%  Similarity=0.270  Sum_probs=168.2

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC-----CcC
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-----NFS  332 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~-----~~~  332 (540)
                      .+.++...+++++.|+.+++|+........ ...|..    ....+.+++++.++++++.... ...+.+..     .+.
T Consensus        58 ~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~  132 (289)
T cd00200          58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS----YVSSVAFSPDGRILSSSSRDKT-IKVWDVETGKCLTTLR  132 (289)
T ss_pred             EECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC----cEEEEEEcCCCCEEEEecCCCe-EEEEECCCcEEEEEec
Confidence            334444568888999999999998643222 223332    2234667777767666642222 12222210     011


Q ss_pred             cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                       ...-.+.+++++|++. ++++++.|+.|++||+++++.+..+               ..|.+.|.+++|+|    +++.
T Consensus       133 -~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~---------------~~~~~~i~~~~~~~----~~~~  191 (289)
T cd00200         133 -GHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATL---------------TGHTGEVNSVAFSP----DGEK  191 (289)
T ss_pred             -cCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeE---------------ecCccccceEEECC----CcCE
Confidence             1112367888899988 4688878999999999988888777               67888999999999    8989


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      +++++.|+.|++||++.           .+++..+.+|...+.+++|++++.++++++.||.+++|+. +++.+..+..|
T Consensus       192 l~~~~~~~~i~i~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~  260 (289)
T cd00200         192 LLSSSSDGTIKLWDLST-----------GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH  260 (289)
T ss_pred             EEEecCCCcEEEEECCC-----------CceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc
Confidence            99999999999999875           3456667789999999999999889999988999999976 57888888877


Q ss_pred             CCCCCceEEEEeeCCCEEEE-ecCCeEEEEe
Q psy1242         492 SGFASPESVVMSREGVIVVN-YERGHIAAFT  521 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~  521 (540)
                      ..  .|.+++|++++.+|++ +.|+.|++|+
T Consensus       261 ~~--~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         261 TN--SVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CC--cEEEEEECCCCCEEEEecCCCeEEecC
Confidence            76  7899999999998887 5689999996

>KOG0283|consensus

Probab=99.83  E-value=4.5e-19  Score=187.82  Aligned_cols=152  Identities=17%  Similarity=0.193  Sum_probs=123.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+.||.++-  |.+++.|.+||+|++...+++.++                .|.+.||||+|+|.   |.+++++||.
T Consensus       372 ILDlSWSKn~f--LLSSSMDKTVRLWh~~~~~CL~~F----------------~HndfVTcVaFnPv---DDryFiSGSL  430 (712)
T KOG0283|consen  372 ILDLSWSKNNF--LLSSSMDKTVRLWHPGRKECLKVF----------------SHNDFVTCVAFNPV---DDRYFISGSL  430 (712)
T ss_pred             heecccccCCe--eEeccccccEEeecCCCcceeeEE----------------ecCCeeEEEEeccc---CCCcEeeccc
Confidence            78888998774  679999999999999999999888                69999999999996   8999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-cEEEEec--CCCC--
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFG-DLLRSLD--PPSG--  493 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g-~~~~~l~--~~~~--  493 (540)
                      ||.||||++..            ..+.....-..-|++++++|||+..+.|+-+|.|++++..+ +++....  .+..  
T Consensus       431 D~KvRiWsI~d------------~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  431 DGKVRLWSISD------------KKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             ccceEEeecCc------------CeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence            99999999875            23444445558899999999999999999999999986644 3333222  2210  


Q ss_pred             --CCCceEEEEeeCC--CEEEEecCCeEEEEecC
Q psy1242         494 --FASPESVVMSREG--VIVVNYERGHIAAFTMN  523 (540)
Q Consensus       494 --~~~v~~l~fspdg--~~l~s~~dg~I~lw~~~  523 (540)
                        ...|+++.|.|..  ++|+++.|.+|+|||.+
T Consensus       499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~  532 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR  532 (712)
T ss_pred             ccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence              1158999998754  48899999999999984

>KOG0640|consensus

Probab=99.82  E-value=1.2e-19  Score=171.92  Aligned_cols=231  Identities=14%  Similarity=0.163  Sum_probs=168.3

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN  330 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~  330 (540)
                      |.++...-.+..++.+++|||.|..|++.|........  .+.                .+. .|...   ...-.++..
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~----------------em~-~~~~q---a~hPvIRTl  168 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPK----------------EMI-SGDTQ---ARHPVIRTL  168 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chh----------------hhc-cCCcc---cCCceEeeh
Confidence            55566667788888889999999999999975321111  011                000 00000   000112223


Q ss_pred             cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                      +++.-.  ++++.|+|... +|++|+.|++|+++|.......+.++            . ......|.||+|+|    .|
T Consensus       169 YDH~de--vn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K------------~-~qd~~~vrsiSfHP----sG  228 (430)
T KOG0640|consen  169 YDHVDE--VNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFK------------V-FQDTEPVRSISFHP----SG  228 (430)
T ss_pred             hhccCc--ccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHH------------H-hhccceeeeEeecC----CC
Confidence            333222  78889999998 78999999999999987532211110            0 13456899999999    99


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD  489 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~  489 (540)
                      .+|+.|..-.+++++|+++.+.-..        ...-.+|++.|++|..|+.|++.++||.||.|++|+- ++++++++.
T Consensus       229 efllvgTdHp~~rlYdv~T~Qcfvs--------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~  300 (430)
T KOG0640|consen  229 EFLLVGTDHPTLRLYDVNTYQCFVS--------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG  300 (430)
T ss_pred             ceEEEecCCCceeEEeccceeEeee--------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH
Confidence            9999999999999999988543211        1122579999999999999999999999999999986 889999887


Q ss_pred             CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         490 PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      ...+...|+++.|+.+|++|++ |-|..+++|.+. |+.|..+.
T Consensus       301 ~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  301 NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence            5444447999999999999998 668999999997 88887764

>PTZ00420 coronin; Provisional

Probab=99.82  E-value=3.8e-18  Score=182.98  Aligned_cols=171  Identities=12%  Similarity=0.081  Sum_probs=128.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeE-EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE-EEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI-VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF-IASG  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~-~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~-l~sg  416 (540)
                      +.+++|+|+...+||+|+.|++|+|||+.++.. ...+        ...+..+.+|...|++++|+|    ++.. |+||
T Consensus        77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--------~~p~~~L~gH~~~V~sVaf~P----~g~~iLaSg  144 (568)
T PTZ00420         77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--------KDPQCILKGHKKKISIIDWNP----MNYYIMCSS  144 (568)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------ccceEEeecCCCcEEEEEECC----CCCeEEEEE
Confidence            788899997433689999999999999986432 1111        011223478999999999999    7765 5799


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA  495 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~  495 (540)
                      +.|++|+|||++..           +.+..+. |...|.+++|+|+|.+|++++.|+.|+||+. +++.+.++.+|.+..
T Consensus       145 S~DgtIrIWDl~tg-----------~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~  212 (568)
T PTZ00420        145 GFDSFVNIWDIENE-----------KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK  212 (568)
T ss_pred             eCCCeEEEEECCCC-----------cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence            99999999999763           3344454 5678999999999999999999999999976 788888999888621


Q ss_pred             ---CceEEEEeeCCCEEEE-ecC----CeEEEEecC--CcEEEeeecC
Q psy1242         496 ---SPESVVMSREGVIVVN-YER----GHIAAFTMN--GNRLRHESHN  533 (540)
Q Consensus       496 ---~v~~l~fspdg~~l~s-~~d----g~I~lw~~~--g~~l~~~~~~  533 (540)
                         .+....|++++.+|++ |.+    ++|++||+.  ++.+....++
T Consensus       213 ~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld  260 (568)
T PTZ00420        213 NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID  260 (568)
T ss_pred             eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec
Confidence               1122345688888877 544    479999987  5666655433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.82  E-value=2e-18  Score=196.72  Aligned_cols=226  Identities=20%  Similarity=0.262  Sum_probs=162.2

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCCCcC-cc--eeeE
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFS-QK--LRVR  338 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~~~-~~--~~v~  338 (540)
                      ...++|++.|++|++||..++... ...+|.+.|.    .+.|++ |+.++++|+.+.. ...+.+..... ..  ....
T Consensus       545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~----~l~~~p~~~~~L~Sgs~Dg~-v~iWd~~~~~~~~~~~~~~~  619 (793)
T PLN00181        545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW----SIDYSSADPTLLASGSDDGS-VKLWSINQGVSIGTIKTKAN  619 (793)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE----EEEEcCCCCCEEEEEcCCCE-EEEEECCCCcEEEEEecCCC
Confidence            457899999999999998765533 3335664443    466774 6777666654332 23333221100 00  0113


Q ss_pred             EEEEEEec-CCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      +.|+.|++ +|. +|++|+.||+|++||+++++ .+..+               .+|...|++++|.     ++..|+++
T Consensus       620 v~~v~~~~~~g~-~latgs~dg~I~iwD~~~~~~~~~~~---------------~~h~~~V~~v~f~-----~~~~lvs~  678 (793)
T PLN00181        620 ICCVQFPSESGR-SLAFGSADHKVYYYDLRNPKLPLCTM---------------IGHSKTVSYVRFV-----DSSTLVSS  678 (793)
T ss_pred             eEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCCccceEe---------------cCCCCCEEEEEEe-----CCCEEEEE
Confidence            67778854 577 58999999999999998765 34555               7899999999996     57799999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe-------
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL-------  488 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l-------  488 (540)
                      +.|++|++||++....     .....++..+.+|...+.+++|++++.+|++|+.||.|++|+. .+..+..+       
T Consensus       679 s~D~~ikiWd~~~~~~-----~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~  753 (793)
T PLN00181        679 STDNTLKLWDLSMSIS-----GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP  753 (793)
T ss_pred             ECCCEEEEEeCCCCcc-----ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence            9999999999875321     0113577889999999999999999999999999999999975 33322221       


Q ss_pred             ------cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEec
Q psy1242         489 ------DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM  522 (540)
Q Consensus       489 ------~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~  522 (540)
                            ..+..  .|.+++|+|+|..|+++ ++|.|++|++
T Consensus       754 ~~~~~~~~~~~--~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        754 VSGLEVDDASQ--FISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ccccccCCCCc--EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence                  11222  58999999999998885 6899999985

>KOG0292|consensus

Probab=99.81  E-value=1e-18  Score=184.61  Aligned_cols=244  Identities=15%  Similarity=0.158  Sum_probs=170.6

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCC-CCeeeccCCCCCC-ccccccCCCcC--c
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLD-PILTHPTSNNNAP-VPKRHLGDNFS--Q  333 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D-~~l~~~g~~~~~~-~~~~~~~~~~~--~  333 (540)
                      .|++..-++||||.|.+|++|+.....+. ...+|-+=|+.    +.|... |=+++++ ++... ...++.+....  .
T Consensus        58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt----~~FHheyPWIlSAS-DDQTIrIWNwqsr~~iavlt  132 (1202)
T KOG0292|consen   58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRT----VFFHHEYPWILSAS-DDQTIRIWNWQSRKCIAVLT  132 (1202)
T ss_pred             eecCCCCeEEecCCccEEEEEecccceehhhhccccceeEE----eeccCCCceEEEcc-CCCeEEEEeccCCceEEEEe
Confidence            33333334999999999999998776644 33466654442    222222 1222222 11111 22233332221  2


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEec--------cc--ceee----eeeEEEeeccCcceEE
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFG--------HY--GVVT----SRIVQIIFGHYGVVTC  399 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~--------~~--~~v~----~~~~~~l~~h~~~Vt~  399 (540)
                      +..-.+.|.+|+|... +|++||-|-+|||||+..-+.-..-.+        +.  ..+.    +-..+.+.||...|+-
T Consensus       133 GHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw  211 (1202)
T KOG0292|consen  133 GHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW  211 (1202)
T ss_pred             cCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence            2333489999999877 689999999999999863221111111        10  0111    1346778999999999


Q ss_pred             EEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         400 LSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       400 l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      ++|+|    .--.|+||+.|..|++|.++...         .--+.+..||.+.|.|+-|+|...+|+|.|.|++|+||+
T Consensus       212 aAfhp----TlpliVSG~DDRqVKlWrmnetK---------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  212 AAFHP----TLPLIVSGADDRQVKLWRMNETK---------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             EEecC----CcceEEecCCcceeeEEEecccc---------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            99999    67899999999999999987533         123567789999999999999999999999999999998


Q ss_pred             C-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         480 T-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       480 ~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      . ..+.+.+++...+  ..+.++.+|..+.+++|.|+-+.+|-++
T Consensus       279 m~kRt~v~tfrrend--RFW~laahP~lNLfAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  279 MTKRTSVQTFRREND--RFWILAAHPELNLFAAGHDSGMIVFKLE  321 (1202)
T ss_pred             cccccceeeeeccCC--eEEEEEecCCcceeeeecCCceEEEEEc
Confidence            8 4567888877666  6799999999999999988877777655

>KOG1407|consensus

Probab=99.81  E-value=2.1e-18  Score=160.17  Aligned_cols=233  Identities=15%  Similarity=0.172  Sum_probs=168.9

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCcccc-CCCCeeeccCCCCCCccccccCCCc
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLT-LDPILTHPTSNNNAPVPKRHLGDNF  331 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s-~D~~l~~~g~~~~~~~~~~~~~~~~  331 (540)
                      ..+...-++..+++++.|.++++|+.......   ...+|.++|..    +.+. +.+-++++.+.+.. ...+.++..-
T Consensus        24 ~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdq----l~w~~~~~d~~atas~dk~-ir~wd~r~~k   98 (313)
T KOG1407|consen   24 HSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQ----LCWDPKHPDLFATASGDKT-IRIWDIRSGK   98 (313)
T ss_pred             eEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhh----heeCCCCCcceEEecCCce-EEEEEeccCc
Confidence            33445556666999999999999999865432   34466655532    2333 33434433332322 3333332211


Q ss_pred             ---CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccc--eee--------------------e--
Q psy1242         332 ---SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYG--VVT--------------------S--  384 (540)
Q Consensus       332 ---~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~--~v~--------------------~--  384 (540)
                         .......-..+.|+|+|++ ++.|..|..|.+.|.++.+.....+-...  .+.                    +  
T Consensus        99 ~~~~i~~~~eni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp  177 (313)
T KOG1407|consen   99 CTARIETKGENINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP  177 (313)
T ss_pred             EEEEeeccCcceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence               1111222456788999997 68888999999999988766543321111  110                    0  


Q ss_pred             --eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242         385 --RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE  462 (540)
Q Consensus       385 --~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd  462 (540)
                        +.++.+++|.....||+|+|    +|+++++|+.|..|.+||++.           .-|.+.+..++-+|..+.||-+
T Consensus       178 sLkpv~si~AH~snCicI~f~p----~GryfA~GsADAlvSLWD~~E-----------LiC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  178 SLKPVQSIKAHPSNCICIEFDP----DGRYFATGSADALVSLWDVDE-----------LICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             ccccccccccCCcceEEEEECC----CCceEeeccccceeeccChhH-----------hhhheeeccccCceEEEEeccC
Confidence              56788899999999999999    999999999999999999875           5688999999999999999999


Q ss_pred             CCEEEEEeCCCcEEE-EeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEe
Q psy1242         463 LGLVVSGSQLGPVLV-HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY  512 (540)
Q Consensus       463 g~~lasgs~Dg~v~i-w~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~  512 (540)
                      |++||+||.|..|-| ...+|..+..++...   +...++|+|...+||.+
T Consensus       243 g~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             cceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEE
Confidence            999999999999976 677999999887544   56899999999999874

>KOG0277|consensus

Probab=99.81  E-value=4.3e-19  Score=164.18  Aligned_cols=154  Identities=15%  Similarity=0.148  Sum_probs=130.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.++.|++-.+..++++|||++|++|+...++.+.++               .||.+.|...+|+|.   .++.++++|.
T Consensus       107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf---------------~gh~~~Iy~a~~sp~---~~nlfas~Sg  168 (311)
T KOG0277|consen  107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF---------------NGHNSCIYQAAFSPH---IPNLFASASG  168 (311)
T ss_pred             eEEeccccccceeEEeeccCCceEeecCCCCcceEee---------------cCCccEEEEEecCCC---CCCeEEEccC
Confidence            5566677777777888999999999999988888888               899999999999995   7899999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCC--CcEEEEecCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTTF--GDLLRSLDPPSGFA  495 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~~--g~~~~~l~~~~~~~  495 (540)
                      |+++++||++..          ++. ..+..|..++.|+.|+. +..++++|+.|+.|++|+..  ..++..+.+|.-  
T Consensus       169 d~~l~lwdvr~~----------gk~-~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~--  235 (311)
T KOG0277|consen  169 DGTLRLWDVRSP----------GKF-MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL--  235 (311)
T ss_pred             CceEEEEEecCC----------Cce-eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce--
Confidence            999999998762          233 34889999999999997 45688999999999999762  356788888887  


Q ss_pred             CceEEEEeeCCC-EEEE-ecCCeEEEEecC
Q psy1242         496 SPESVVMSREGV-IVVN-YERGHIAAFTMN  523 (540)
Q Consensus       496 ~v~~l~fspdg~-~l~s-~~dg~I~lw~~~  523 (540)
                      .|..+.|||... +|++ +-|-++++|+..
T Consensus       236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             EEEEEecCcchhhHhhhccccceEEecccc
Confidence            789999999865 5555 458999999976

>KOG1332|consensus

Probab=99.80  E-value=6.9e-19  Score=161.99  Aligned_cols=236  Identities=17%  Similarity=0.144  Sum_probs=157.9

Q ss_pred             CCcEEEEEccCcceEEEEcCCCCC----cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccc-------ccCCC
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR-------HLGDN  330 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~~----~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~-------~~~~~  330 (540)
                      .-+..+||||.|++||+.......    .....+|.++|-...  ..-.+=|.++++++-+..+...+       +....
T Consensus        21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~--wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~   98 (299)
T KOG1332|consen   21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVA--WAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH   98 (299)
T ss_pred             hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEe--ecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence            345569999999999999876543    344567888873221  00111234444443333322221       11122


Q ss_pred             cCcceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCC-e-EEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         331 FSQKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNA-R-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g-~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                      ..+  ..++++++|.|.  |- +||||+.||.|.|.+.+.. . ....+              ...|.-.|++++|.|..
T Consensus        99 ~~h--~~SVNsV~wapheygl-~LacasSDG~vsvl~~~~~g~w~t~ki--------------~~aH~~GvnsVswapa~  161 (299)
T KOG1332|consen   99 AAH--SASVNSVAWAPHEYGL-LLACASSDGKVSVLTYDSSGGWTTSKI--------------VFAHEIGVNSVSWAPAS  161 (299)
T ss_pred             hhh--cccceeecccccccce-EEEEeeCCCcEEEEEEcCCCCccchhh--------------hhccccccceeeecCcC
Confidence            223  334556655554  44 7899999999999988743 2 11222              16899999999999931


Q ss_pred             cCCC-----------cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC----CEEEEEeC
Q psy1242         407 ITAD-----------CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL----GLVVSGSQ  471 (540)
Q Consensus       407 ~~dg-----------~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg----~~lasgs~  471 (540)
                      . .|           +.|+||+.|.+|+||+.+..+         ...-.+|.+|.+.|..++|.|.-    .+|||||.
T Consensus       162 ~-~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq  231 (299)
T KOG1332|consen  162 A-PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ  231 (299)
T ss_pred             C-CccccccCcccccceeeccCCccceeeeecCCcc---------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence            1 13           579999999999999987643         23445689999999999999964    47999999


Q ss_pred             CCcEEEEeCCCc---EEE-EecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC--CcEEE
Q psy1242         472 LGPVLVHTTFGD---LLR-SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN--GNRLR  528 (540)
Q Consensus       472 Dg~v~iw~~~g~---~~~-~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~--g~~l~  528 (540)
                      ||+|.||+...+   ... .+..-..  .++++.||..|.+|+. ++|+.|.+|-.+  |+...
T Consensus       232 Dg~viIwt~~~e~e~wk~tll~~f~~--~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~  293 (299)
T KOG1332|consen  232 DGTVIIWTKDEEYEPWKKTLLEEFPD--VVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEE  293 (299)
T ss_pred             CCcEEEEEecCccCcccccccccCCc--ceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEE
Confidence            999999965322   111 2222233  6899999999999997 678999999654  66554

>KOG0264|consensus

Probab=99.80  E-value=4.7e-18  Score=168.86  Aligned_cols=237  Identities=15%  Similarity=0.115  Sum_probs=173.8

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcc-----------cCCCCcCCCCCCCCCccccC--CCCeeeccCCCCCC
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-----------QSPSYAETPGSPPGNLPLTL--DPILTHPTSNNNAP  321 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-----------~~~~~~~~v~~~~~~~~~s~--D~~l~~~g~~~~~~  321 (540)
                      +..-.+|....+++|.+..+.|.+||.......           ...+|..+    ...++|+.  .+.++.++  .+..
T Consensus       128 nRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e----g~glsWn~~~~g~Lls~~--~d~~  201 (422)
T KOG0264|consen  128 NRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE----GYGLSWNRQQEGTLLSGS--DDHT  201 (422)
T ss_pred             hhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc----ccccccccccceeEeecc--CCCc
Confidence            444456667777999999999999997643311           23356642    11244543  44555444  3334


Q ss_pred             ccccccCCCcC-----------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC--CeEEEEEecccceeeeeeEE
Q psy1242         322 VPKRHLGDNFS-----------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN--ARIVQIIFGHYGVVTSRIVQ  388 (540)
Q Consensus       322 ~~~~~~~~~~~-----------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~--g~~~~~l~~~~~~v~~~~~~  388 (540)
                      .+.+.+...-.           ....-.+..++|++-...++++.+.|+.+.|||+++  .+..+..             
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~-------------  268 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV-------------  268 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc-------------
Confidence            44444432211           011123778889998888999999999999999994  4444555             


Q ss_pred             EeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEE
Q psy1242         389 IIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVV  467 (540)
Q Consensus       389 ~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~la  467 (540)
                        .+|.+.|.|++|+|.   ++..|||||.|++|.|||++...          +++.++.+|...|.+|.|||.. .+||
T Consensus       269 --~ah~~~vn~~~fnp~---~~~ilAT~S~D~tV~LwDlRnL~----------~~lh~~e~H~dev~~V~WSPh~etvLA  333 (422)
T KOG0264|consen  269 --KAHSAEVNCVAFNPF---NEFILATGSADKTVALWDLRNLN----------KPLHTFEGHEDEVFQVEWSPHNETVLA  333 (422)
T ss_pred             --cccCCceeEEEeCCC---CCceEEeccCCCcEEEeechhcc----------cCceeccCCCcceEEEEeCCCCCceeE
Confidence              789999999999995   77889999999999999998754          5789999999999999999976 4789


Q ss_pred             EEeCCCcEEEEeCC--C-------------cEEEEecCCCCCCCceEEEEeeCCCEEEE--ecCCeEEEEecCCcEE
Q psy1242         468 SGSQLGPVLVHTTF--G-------------DLLRSLDPPSGFASPESVVMSREGVIVVN--YERGHIAAFTMNGNRL  527 (540)
Q Consensus       468 sgs~Dg~v~iw~~~--g-------------~~~~~l~~~~~~~~v~~l~fspdg~~l~s--~~dg~I~lw~~~g~~l  527 (540)
                      |++.|+.+.||+.+  |             +++....+|..  .|....|+|+...+++  +.|+.+.||.+...+.
T Consensus       334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~--kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~  408 (422)
T KOG0264|consen  334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA--KVSDFSWNPNEPWTIASVAEDNILQIWQMAENIY  408 (422)
T ss_pred             ecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc--ccccccCCCCCCeEEEEecCCceEEEeecccccc
Confidence            99999999999752  2             23466677877  7899999999887766  5689999999875443

>KOG0274|consensus

Probab=99.80  E-value=1.3e-18  Score=185.76  Aligned_cols=234  Identities=21%  Similarity=0.306  Sum_probs=171.3

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |...+....++.-.-.++|||.|.++++||..++.+.... +|.+++.      ....++.+.++|+. +.....+++..
T Consensus       248 H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~------~~~~~~~~~~sgs~-D~tVkVW~v~n  320 (537)
T KOG0274|consen  248 HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR------CLTIDPFLLVSGSR-DNTVKVWDVTN  320 (537)
T ss_pred             CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE------EEEccCceEeeccC-CceEEEEeccC
Confidence            3333444445545777999999999999999888866554 5775553      23333434433322 22233333331


Q ss_pred             C-----cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         330 N-----FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       330 ~-----~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      .     +.. ....+.|+..+  +. ++++|+.|++|+|||+.+++++.++               .||.+.|.++.+.+
T Consensus       321 ~~~l~l~~~-h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~cl~sl---------------~gH~~~V~sl~~~~  381 (537)
T KOG0274|consen  321 GACLNLLRG-HTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKCLKSL---------------SGHTGRVYSLIVDS  381 (537)
T ss_pred             cceEEEecc-ccccEEEEEec--CC-EEEEEecCceEEEEEhhhceeeeee---------------cCCcceEEEEEecC
Confidence            1     110 22236777655  55 5899999999999999999999999               89999999998854


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD  483 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~  483 (540)
                          . ..+++|+.|++|++||+++..          +++.++.+|...|.++.+  .+.++++++.|++|++|+. +++
T Consensus       382 ----~-~~~~Sgs~D~~IkvWdl~~~~----------~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~  444 (537)
T KOG0274|consen  382 ----E-NRLLSGSLDTTIKVWDLRTKR----------KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE  444 (537)
T ss_pred             ----c-ceEEeeeeccceEeecCCchh----------hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCc
Confidence                2 899999999999999998721          689999999999977655  5779999999999999976 899


Q ss_pred             EEEEecC-CCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEee
Q psy1242         484 LLRSLDP-PSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       484 ~~~~l~~-~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~  530 (540)
                      +++++.+ |.+  .|..+++. +..+++++.+|.+.+||+. |......
T Consensus       445 ~~~~~~~~~~~--~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  445 CLRTLEGRHVG--GVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             eeeeeccCCcc--cEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence            9999998 445  57777776 4556666889999999987 6655533

>KOG1446|consensus

Probab=99.80  E-value=3.6e-17  Score=156.12  Aligned_cols=243  Identities=9%  Similarity=0.094  Sum_probs=169.9

Q ss_pred             cCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCC-CCCC------ccccccCCCcCc
Q psy1242         261 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSN-NNAP------VPKRHLGDNFSQ  333 (540)
Q Consensus       261 ~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~-~~~~------~~~~~~~~~~~~  333 (540)
                      ..++..+++++.|.+++++|...++.......+   ..+.....|..+...+..++. .+..      ...+.++-.-.+
T Consensus        23 s~~G~~litss~dDsl~LYd~~~g~~~~ti~sk---kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH   99 (311)
T KOG1446|consen   23 SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK---KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGH   99 (311)
T ss_pred             cCCCCEEEEecCCCeEEEEEcCCCceeeEeecc---cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCC
Confidence            334444889999999999999887755443322   222233455555544444432 1111      111122211222


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ..  .++.+..+|-+. .+.+++.|++||+||++..++...+                 +...-..+|++|    .|-.+
T Consensus       100 ~~--~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l-----------------~~~~~pi~AfDp----~GLif  155 (311)
T KOG1446|consen  100 KK--RVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLL-----------------NLSGRPIAAFDP----EGLIF  155 (311)
T ss_pred             Cc--eEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEE-----------------ecCCCcceeECC----CCcEE
Confidence            22  367777799887 4899999999999999988877666                 333445679999    89999


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD  489 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~  489 (540)
                      |++.....|+++|++.-.         ..|..++.   +-....+.+.|||||++++.++..+.+.+-+. +|..+.++.
T Consensus       156 A~~~~~~~IkLyD~Rs~d---------kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFD---------KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             EEecCCCeEEEEEecccC---------CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence            999888899999998643         23444442   44678999999999999999999999877554 999999888


Q ss_pred             CCCCCC-CceEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEeee--cCCcceec
Q psy1242         490 PPSGFA-SPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES--HNDNLQKT  539 (540)
Q Consensus       490 ~~~~~~-~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~~--~~~~V~~v  539 (540)
                      .+.... ..-..+|+|||+++++|+ ||+|++|+++ |+.+....  +..++.|+
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~  281 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCV  281 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccc
Confidence            765422 235789999999999965 6999999998 87777664  45666654

>KOG2096|consensus

Probab=99.80  E-value=3e-18  Score=163.05  Aligned_cols=265  Identities=15%  Similarity=0.122  Sum_probs=175.5

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCC-cCCCCCCCCCccccCCCCeeeccCCCCCCcccccc--
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSY-AETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL--  327 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~-~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~--  327 (540)
                      |...++.+.+..++..++|+++|++||+|+..+-....-... .+-.......+.|++|..-++..-...+.....++  
T Consensus        85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K  164 (420)
T KOG2096|consen   85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK  164 (420)
T ss_pred             cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence            344455555666666699999999999999875321111000 00012223346778876433322101111111100  


Q ss_pred             ---C-----------CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc
Q psy1242         328 ---G-----------DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH  393 (540)
Q Consensus       328 ---~-----------~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h  393 (540)
                         +           ..|.....+.+..+-+...++ .|++++.|..|.+|++. |+.++.+               ...
T Consensus       165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~i---------------dtn  227 (420)
T KOG2096|consen  165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSI---------------DTN  227 (420)
T ss_pred             cccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeee---------------ccc
Confidence               0           113333445566666666677 47999999999999998 9998888               555


Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG  473 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg  473 (540)
                      +..-...+.||    +|++|++++.---|++|..--...   ++..+-..+..+.||...|...+||++...+++.|.||
T Consensus       228 q~~n~~aavSP----~GRFia~~gFTpDVkVwE~~f~kd---G~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG  300 (420)
T KOG2096|consen  228 QSSNYDAAVSP----DGRFIAVSGFTPDVKVWEPIFTKD---GTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG  300 (420)
T ss_pred             cccccceeeCC----CCcEEEEecCCCCceEEEEEeccC---cchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence            66667789999    999999999999999998632211   11112345678899999999999999999999999999


Q ss_pred             cEEEEeCC--------CcEEEEecC--CCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee--cCCcceec
Q psy1242         474 PVLVHTTF--------GDLLRSLDP--PSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES--HNDNLQKT  539 (540)
Q Consensus       474 ~v~iw~~~--------g~~~~~l~~--~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~--~~~~V~~v  539 (540)
                      +++||+.+        .+.+++...  +.....+..++++|+|+.|+.+....|++|..+ |+.+.+++  |.+.|.||
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~i  379 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSI  379 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeE
Confidence            99999642        223333321  111224568999999999999877788888765 77766665  77777665

>KOG0299|consensus

Probab=99.80  E-value=2.9e-18  Score=170.35  Aligned_cols=220  Identities=20%  Similarity=0.216  Sum_probs=167.8

Q ss_pred             ccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCc
Q psy1242         254 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ  333 (540)
Q Consensus       254 ~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~  333 (540)
                      +++.+.++++.....+++.+++|..|+..++....+.--...+              +-..+   ......+  ..+..+
T Consensus       144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev--------------~k~~~---~~~k~~r--~~h~ke  204 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV--------------LKSHG---NPLKESR--KGHVKE  204 (479)
T ss_pred             cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh--------------hhhcc---CCCCccc--ccccce
Confidence            3455566667777999999999999999875533211111000              00000   0001111  123333


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                           +.|+++|+||++ ||+|+.|..|.||+.++++.++.+               .+|.+.|.+++|-.    .-..|
T Consensus       205 -----il~~avS~Dgky-latgg~d~~v~Iw~~~t~ehv~~~---------------~ghr~~V~~L~fr~----gt~~l  259 (479)
T KOG0299|consen  205 -----ILTLAVSSDGKY-LATGGRDRHVQIWDCDTLEHVKVF---------------KGHRGAVSSLAFRK----GTSEL  259 (479)
T ss_pred             -----eEEEEEcCCCcE-EEecCCCceEEEecCcccchhhcc---------------cccccceeeeeeec----Cccce
Confidence                 788999999997 799999999999999999999988               89999999999987    66789


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSG  493 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~  493 (540)
                      +++|.|.+|++|+++.           ...+.++.||.+.|.+|....-++.+-+|+.|+++++|...-+....+.++.+
T Consensus       260 ys~s~Drsvkvw~~~~-----------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~  328 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQ-----------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEG  328 (479)
T ss_pred             eeeecCCceEEEehhH-----------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCC
Confidence            9999999999999876           34678899999999999888888888888899999999775555566777777


Q ss_pred             CCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEee
Q psy1242         494 FASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~  530 (540)
                        .+.|++|-.+.+++..+++|.|.+|++- -+.|.+.
T Consensus       329 --sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  329 --SIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             --CeeeEEEecccceeeccCCceEEEeeecccCceeEe
Confidence              7899999888877777888999999976 4555444

>KOG0274|consensus

Probab=99.80  E-value=4.2e-18  Score=181.95  Aligned_cols=210  Identities=19%  Similarity=0.244  Sum_probs=150.8

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcc--cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEE
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASI--QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNC  341 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~--~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~  341 (540)
                      ...+++++.|.++++|+...+...  ...+|.+.|.                                           +
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~-------------------------------------------~  254 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVW-------------------------------------------G  254 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCce-------------------------------------------e
Confidence            445789999999999998764422  1334543332                                           2


Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------eeEEEeeccCcc
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------RIVQIIFGHYGV  396 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------~~~~~l~~h~~~  396 (540)
                      +++..-+. ++++|+.|.++++||..+|++...+.+|.+.+.+                         .++.++.+|.++
T Consensus       255 l~~~~~~~-~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~  333 (537)
T KOG0274|consen  255 LAFPSGGD-KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGP  333 (537)
T ss_pred             EEEecCCC-EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccccc
Confidence            22222122 3455555555555555555555555555544422                         234444789999


Q ss_pred             eEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy1242         397 VTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVL  476 (540)
Q Consensus       397 Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~  476 (540)
                      |.|+..      ++.++++|+.|++|++||..+           ++++..+.||...|.++.+... ..+++|+.|++|+
T Consensus       334 V~~v~~------~~~~lvsgs~d~~v~VW~~~~-----------~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~Ik  395 (537)
T KOG0274|consen  334 VNCVQL------DEPLLVSGSYDGTVKVWDPRT-----------GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIK  395 (537)
T ss_pred             EEEEEe------cCCEEEEEecCceEEEEEhhh-----------ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceE
Confidence            999998      467999999999999999885           6799999999999999988765 8999999999999


Q ss_pred             EEeC-CC-cEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeec--CCcceec
Q psy1242         477 VHTT-FG-DLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESH--NDNLQKT  539 (540)
Q Consensus       477 iw~~-~g-~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~--~~~V~~v  539 (540)
                      +|+. ++ +++.++.+|..  .+..+.  ..+++|++ +.|++|++||.+ ++.+..+..  .+.|.++
T Consensus       396 vWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l  460 (537)
T KOG0274|consen  396 VWDLRTKRKCIHTLQGHTS--LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL  460 (537)
T ss_pred             eecCCchhhhhhhhcCCcc--cccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEe
Confidence            9987 55 69999999987  454444  45777887 469999999987 888877763  3666654

>KOG0269|consensus

Probab=99.79  E-value=4.9e-19  Score=185.18  Aligned_cols=212  Identities=13%  Similarity=0.101  Sum_probs=162.8

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeE
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVR  338 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~  338 (540)
                      .-+.....++||+..+.|.+||+....                     ..+.+                . .|.. ..-.
T Consensus        95 W~~~~~NlIAT~s~nG~i~vWdlnk~~---------------------rnk~l----------------~-~f~E-H~Rs  135 (839)
T KOG0269|consen   95 WGQLYSNLIATCSTNGVISVWDLNKSI---------------------RNKLL----------------T-VFNE-HERS  135 (839)
T ss_pred             cccchhhhheeecCCCcEEEEecCccc---------------------cchhh----------------h-Hhhh-hccc
Confidence            335567789999999999999975310                     00000                0 1111 1113


Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.++.|++.-.++|++|+.||+|++||++..+...++               .+....|..|+|+|.   .+..++++..
T Consensus       136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~---------------~~nSESiRDV~fsp~---~~~~F~s~~d  197 (839)
T KOG0269|consen  136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF---------------RSNSESIRDVKFSPG---YGNKFASIHD  197 (839)
T ss_pred             eeeeeeccCCccEEEecCCCceEEEEeeecccccccc---------------cccchhhhceeeccC---CCceEEEecC
Confidence            6778888888889999999999999999988888877               677889999999995   7899999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc---EEEEecCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGD---LLRSLDPPSGFA  495 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~---~~~~l~~~~~~~  495 (540)
                      .|.+++||++..          .++...+.+|.++|.|+.|+|++.+||||++|+.|+||+.++.   .+.++..  . .
T Consensus       198 sG~lqlWDlRqp----------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--i-a  264 (839)
T KOG0269|consen  198 SGYLQLWDLRQP----------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--I-A  264 (839)
T ss_pred             CceEEEeeccCc----------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--c-c
Confidence            999999999864          3577889999999999999999999999999999999987532   2333332  2 2


Q ss_pred             CceEEEEeeCCCE-EEEe---cCCeEEEEecCCcEEE--ee-ecCCcceecC
Q psy1242         496 SPESVVMSREGVI-VVNY---ERGHIAAFTMNGNRLR--HE-SHNDNLQKTA  540 (540)
Q Consensus       496 ~v~~l~fspdg~~-l~s~---~dg~I~lw~~~g~~l~--~~-~~~~~V~~va  540 (540)
                      +|.+|.|-|+..+ |+++   .|..|+|||+....+-  ++ +|.+.++.|+
T Consensus       265 pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~  316 (839)
T KOG0269|consen  265 PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIA  316 (839)
T ss_pred             eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccccee
Confidence            7899999998775 4443   4789999999977664  33 3777666553

>KOG1274|consensus

Probab=99.79  E-value=1.4e-17  Score=177.49  Aligned_cols=237  Identities=16%  Similarity=0.168  Sum_probs=172.8

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCC-CcccCCC-CcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYA-ASIQSPS-YAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL  327 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~-~~~~~~~-~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~  327 (540)
                      .|....+.+.+.+++..++||+.|+.|++|+.... ....... +...+.      ++.-++..+++|+ ......+..+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~------~ia~~s~~f~~~s-~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS------SIACYSNHFLTGS-EQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE------EEeecccceEEee-ccceEEEeeC
Confidence            45555677788888889999999999999998765 3222222 322221      2233333333332 2233344444


Q ss_pred             CCCcCcc----eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242         328 GDNFSQK----LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       328 ~~~~~~~----~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s  403 (540)
                      ...-.+.    +.....+++++-+|++ +|.||.|-.|++-++.+......+               .+|.++|.+|.++
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~l---------------rgh~apVl~l~~~  147 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVL---------------RGHDAPVLQLSYD  147 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcE-EEeecCceeEEEEeccccchheee---------------cccCCceeeeeEc
Confidence            4333332    2344677888999995 799999999999999988887777               8999999999999


Q ss_pred             cCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc--------CCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy1242         404 ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG--------HEQPVTSVAISAELGLVVSGSQLGPV  475 (540)
Q Consensus       404 p~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--------h~~~V~~v~~spdg~~lasgs~Dg~v  475 (540)
                      |    .+++|++.+.||.|++|+++.+.           +..++.+        ....+..++|+|+|..++..+.|++|
T Consensus       148 p----~~~fLAvss~dG~v~iw~~~~~~-----------~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V  212 (933)
T KOG1274|consen  148 P----KGNFLAVSSCDGKVQIWDLQDGI-----------LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV  212 (933)
T ss_pred             C----CCCEEEEEecCceEEEEEcccch-----------hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence            9    99999999999999999998633           2222222        13456788999999999999999999


Q ss_pred             EEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecCC
Q psy1242         476 LVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  524 (540)
Q Consensus       476 ~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~g  524 (540)
                      +++.+ .+.....++.......+..+.|+|+|+|||++. +|.|.||+.+.
T Consensus       213 kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  213 KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            99876 566666666533322478999999999999964 89999999884

>KOG0283|consensus

Probab=99.79  E-value=1.3e-18  Score=184.38  Aligned_cols=173  Identities=23%  Similarity=0.217  Sum_probs=133.4

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEec---------------------c---------------cce
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFG---------------------H---------------YGV  381 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~---------------------~---------------~~~  381 (540)
                      .+.|+.||+||++ ||+|+.|+.|+||.+...+....-.+                     +               ...
T Consensus       269 aIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~  347 (712)
T KOG0283|consen  269 AIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC  347 (712)
T ss_pred             cEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence            3678888999996 79999999999998875111000000                     0               000


Q ss_pred             e---------eeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC
Q psy1242         382 V---------TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ  452 (540)
Q Consensus       382 v---------~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~  452 (540)
                      +         ..+.+..+.||.+.|..|+||.     .++|+|+|.|.|||||++..           ..|+..| .|.+
T Consensus       348 ~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-----n~fLLSSSMDKTVRLWh~~~-----------~~CL~~F-~Hnd  410 (712)
T KOG0283|consen  348 VLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-----NNFLLSSSMDKTVRLWHPGR-----------KECLKVF-SHND  410 (712)
T ss_pred             ccCCCccccccccchhhhhccchhheeccccc-----CCeeEeccccccEEeecCCC-----------cceeeEE-ecCC
Confidence            0         0145677789999999999996     56999999999999999865           3577776 5999


Q ss_pred             CEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecCCcEEEee
Q psy1242         453 PVTSVAISA-ELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       453 ~V~~v~~sp-dg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~g~~l~~~  530 (540)
                      .||||+|+| |.++++|||-||.|+||....+.+.....-..  -|++++|+|||+..+.|. +|.+++|+..|..+.+-
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~--lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD--LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh--hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence            999999999 67899999999999999875544444433334  689999999999988875 89999999998766543

>KOG0278|consensus

Probab=99.78  E-value=1.9e-18  Score=159.43  Aligned_cols=224  Identities=14%  Similarity=0.134  Sum_probs=167.7

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc----
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK----  334 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~----  334 (540)
                      .+..+....+|++.|.+.++||..++....++.|+..|.    .+.|+.|...+.+|+... ..+...+..+-.+.    
T Consensus        66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk----~~af~~ds~~lltgg~ek-llrvfdln~p~App~E~~  140 (334)
T KOG0278|consen   66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVK----AVAFSQDSNYLLTGGQEK-LLRVFDLNRPKAPPKEIS  140 (334)
T ss_pred             ecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheee----eEEecccchhhhccchHH-HhhhhhccCCCCCchhhc
Confidence            455566678999999999999999988888888887666    466999997777764221 11112222211111    


Q ss_pred             -eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         335 -LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       335 -~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                       ....+..+.|+...+.+ .+...|++||+||.++|+.++++                .-...|+++.+++    +|++|
T Consensus       141 ghtg~Ir~v~wc~eD~~i-LSSadd~tVRLWD~rTgt~v~sL----------------~~~s~VtSlEvs~----dG~il  199 (334)
T KOG0278|consen  141 GHTGGIRTVLWCHEDKCI-LSSADDKTVRLWDHRTGTEVQSL----------------EFNSPVTSLEVSQ----DGRIL  199 (334)
T ss_pred             CCCCcceeEEEeccCceE-EeeccCCceEEEEeccCcEEEEE----------------ecCCCCcceeecc----CCCEE
Confidence             11225566667777754 55588999999999999999998                2456899999999    88765


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe-cCC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL-DPP  491 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l-~~~  491 (540)
                      . -...++|+.||...           ..++..+. -...|.+.+++|+-..++.|+.|+.++.++. +|..+... ++|
T Consensus       200 T-ia~gssV~Fwdaks-----------f~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh  266 (334)
T KOG0278|consen  200 T-IAYGSSVKFWDAKS-----------FGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH  266 (334)
T ss_pred             E-EecCceeEEecccc-----------ccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC
Confidence            4 45678999999765           23344332 3446888999999999999999999988765 88887775 888


Q ss_pred             CCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         492 SGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      .+  +|.++.|+|+|..-++| .||+|++|..+
T Consensus       267 ~g--pVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  267 FG--PVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             CC--ceEEEEECCCCceeeccCCCceEEEEEec
Confidence            88  89999999999999986 58999999876

>KOG0308|consensus

Probab=99.78  E-value=6.4e-18  Score=173.87  Aligned_cols=229  Identities=14%  Similarity=0.124  Sum_probs=167.4

Q ss_pred             EEEEccCcceEEEEcCCCCCc-------ccCCCCcCCCCCCC------CCccccCCCCeeeccCCCCCCccccccCCCcC
Q psy1242         266 VTVTANHQFAINRWNPDYAAS-------IQSPSYAETPGSPP------GNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS  332 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~-------~~~~~~~~~v~~~~------~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~  332 (540)
                      ++.|+|.|+.|++|+......       .....|.++|.+..      ..+++|.|.++.+......+......++.+-+
T Consensus        39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D  118 (735)
T KOG0308|consen   39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD  118 (735)
T ss_pred             eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc
Confidence            599999999999999865332       11224776664322      23455555544432211111123333333332


Q ss_pred             cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeE--EEEEecccceeeeeeEEEe-eccCcceEEEEeccCccCC
Q psy1242         333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI--VQIIFGHYGVVTSRIVQII-FGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l-~~h~~~Vt~l~~sp~~~~d  409 (540)
                           .+.|+++-...+.++|+|+-|+.|.+||+++|..  +..++.    +.   ...+ .|+.+.|.+++.++    .
T Consensus       119 -----YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~----~t---~~sl~sG~k~siYSLA~N~----t  182 (735)
T KOG0308|consen  119 -----YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN----VT---VNSLGSGPKDSIYSLAMNQ----T  182 (735)
T ss_pred             -----hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc----cc---cccCCCCCccceeeeecCC----c
Confidence                 2788888344444899999999999999998833  322211    00   0111 38999999999999    8


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      |..|++|+..+-+++||.++           .+.+..+.||+.-|.++..+.||..++|+|.||+|++|+. ..+++.++
T Consensus       183 ~t~ivsGgtek~lr~wDprt-----------~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  183 GTIIVSGGTEKDLRLWDPRT-----------CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             ceEEEecCcccceEEecccc-----------ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence            99999999999999999877           3567788899999999999999999999999999999987 67789999


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      ..|..  .|+++..+|+=..+.+| .||.|..=++.
T Consensus       252 ~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  252 IVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             EeccC--ceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            99998  68999999998888885 47888877765

>KOG0973|consensus

Probab=99.77  E-value=1.4e-17  Score=180.68  Aligned_cols=185  Identities=20%  Similarity=0.202  Sum_probs=144.8

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEe----cccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIF----GHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~----~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      .+.|+.|++||++ ||+|+.|+.|.||.... .......    ++...-.++++..+.+|.+.|..++|+|    ++.+|
T Consensus        71 sv~CVR~S~dG~~-lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp----~~~~l  144 (942)
T KOG0973|consen   71 SVNCVRFSPDGSY-LASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP----DDSLL  144 (942)
T ss_pred             ceeEEEECCCCCe-EeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccCC----CccEE
Confidence            4899999999996 79999999999998774 1111111    1222223478888999999999999999    99999


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEEecCCC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRSLDPPS  492 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~l~~~~  492 (540)
                      +++|.|++|.||+..+           .+.+..+.+|.+.|-.+.|.|-|++|||-+.|++|+||. .+..+.+.+..+-
T Consensus       145 vS~s~DnsViiwn~~t-----------F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  145 VSVSLDNSVIIWNAKT-----------FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             EEecccceEEEEcccc-----------ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            9999999999999876           467899999999999999999999999999999999996 4666777776553


Q ss_pred             CC----CCceEEEEeeCCCEEEEe-----cCCeEEEEecCCcEEE--eeecCCcceec
Q psy1242         493 GF----ASPESVVMSREGVIVVNY-----ERGHIAAFTMNGNRLR--HESHNDNLQKT  539 (540)
Q Consensus       493 ~~----~~v~~l~fspdg~~l~s~-----~dg~I~lw~~~g~~l~--~~~~~~~V~~v  539 (540)
                      ..    --...+.|||||++|++.     ...++.|.+-++....  -..|.+++.|+
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evv  271 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVV  271 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEE
Confidence            31    136789999999999984     2356777766543322  22477777765

>KOG0647|consensus

Probab=99.77  E-value=2e-17  Score=156.65  Aligned_cols=183  Identities=14%  Similarity=0.084  Sum_probs=129.4

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .+.|++|+.||.. +++|+.|+.+++||+.+++..+ +               ..|.++|.++.|-+..  .-..|+|||
T Consensus        74 PvL~v~Wsddgsk-Vf~g~~Dk~~k~wDL~S~Q~~~-v---------------~~Hd~pvkt~~wv~~~--~~~cl~TGS  134 (347)
T KOG0647|consen   74 PVLDVCWSDDGSK-VFSGGCDKQAKLWDLASGQVSQ-V---------------AAHDAPVKTCHWVPGM--NYQCLVTGS  134 (347)
T ss_pred             CeEEEEEccCCce-EEeeccCCceEEEEccCCCeee-e---------------eecccceeEEEEecCC--CcceeEecc
Confidence            3788899999986 7899999999999999997654 3               5899999999998721  234899999


Q ss_pred             CCCcEEEEEcCCCcccc---cC----------------CCCCCcceEEe-------ccCC----CCEEEEEEcCCCCEEE
Q psy1242         418 ADCTVLLWHWNARTQSI---VG----------------ETDTPTPRATL-------TGHE----QPVTSVAISAELGLVV  467 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~---~~----------------~~~~~~~~~~l-------~~h~----~~V~~v~~spdg~~la  467 (540)
                      .|.+++.||++......   +.                ..+..-.+..|       +.+.    -.+.||+..+|.+..+
T Consensus       135 WDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a  214 (347)
T KOG0647|consen  135 WDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA  214 (347)
T ss_pred             cccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE
Confidence            99999999987543211   00                00111111222       1222    3578999999988889


Q ss_pred             EEeCCCcEEEEe-CCC--cEEEEecCCCC-------CCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEe-eecCC
Q psy1242         468 SGSQLGPVLVHT-TFG--DLLRSLDPPSG-------FASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRH-ESHND  534 (540)
Q Consensus       468 sgs~Dg~v~iw~-~~g--~~~~~l~~~~~-------~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~-~~~~~  534 (540)
                      .|+-+|.+-|.. ..+  +.-.++++|..       -..|++|+|+|.-..|++ |+||+..+||-+ ...|.+ ..|..
T Consensus       215 lGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q  294 (347)
T KOG0647|consen  215 LGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ  294 (347)
T ss_pred             eeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC
Confidence            999999998752 232  33345555542       115788999998777776 899999999988 334444 44888


Q ss_pred             cceec
Q psy1242         535 NLQKT  539 (540)
Q Consensus       535 ~V~~v  539 (540)
                      +|+|.
T Consensus       295 pItcc  299 (347)
T KOG0647|consen  295 PITCC  299 (347)
T ss_pred             cccee
Confidence            88775

>KOG0316|consensus

Probab=99.77  E-value=7e-18  Score=154.58  Aligned_cols=192  Identities=18%  Similarity=0.184  Sum_probs=151.4

Q ss_pred             ccccCCCCeeeccCCCCCCccc-----cccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEec
Q psy1242         303 LPLTLDPILTHPTSNNNAPVPK-----RHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFG  377 (540)
Q Consensus       303 ~~~s~D~~l~~~g~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~  377 (540)
                      +.+.-||..+.++..+......     ..+.....+..+  +...+.+.|+.. +++|+.|..+.+||+.+|+.+..+  
T Consensus        23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~Dnsk-f~s~GgDk~v~vwDV~TGkv~Rr~--   97 (307)
T KOG0316|consen   23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSSDNSK-FASCGGDKAVQVWDVNTGKVDRRF--   97 (307)
T ss_pred             EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccccccc-cccCCCCceEEEEEcccCeeeeec--
Confidence            4566677777666433332222     222223333333  567777888886 688889999999999999999999  


Q ss_pred             ccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEE
Q psy1242         378 HYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSV  457 (540)
Q Consensus       378 ~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v  457 (540)
                                   .+|.+.|+.++|+.    +...+++||.|.++++||.+...         .+|++++..-.+.|.+|
T Consensus        98 -------------rgH~aqVNtV~fNe----esSVv~SgsfD~s~r~wDCRS~s---------~ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   98 -------------RGHLAQVNTVRFNE----ESSVVASGSFDSSVRLWDCRSRS---------FEPIQILDEAKDGVSSI  151 (307)
T ss_pred             -------------ccccceeeEEEecC----cceEEEeccccceeEEEEcccCC---------CCccchhhhhcCceeEE
Confidence                         89999999999998    88999999999999999998744         67999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         458 AISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       458 ~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      .++  +..|++||.||+++.++. .|++....-++    +|++++|+++|+.++. +-++++++.|-+ |++|.++.
T Consensus       152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk  222 (307)
T KOG0316|consen  152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK  222 (307)
T ss_pred             Eec--ccEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc
Confidence            885  568999999999999865 77765544433    7899999999998776 458999999987 88887764

>KOG0310|consensus

Probab=99.77  E-value=4.1e-18  Score=170.46  Aligned_cols=169  Identities=24%  Similarity=0.303  Sum_probs=141.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+.|..||+ |+|+|...|.|+|+|+.+.-.+..+               .+|+.+|..+.|+|.   ++..+++|+.
T Consensus        71 v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~---------------~ah~apv~~~~f~~~---d~t~l~s~sD  131 (487)
T KOG0310|consen   71 VYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVILRQL---------------YAHQAPVHVTKFSPQ---DNTMLVSGSD  131 (487)
T ss_pred             eeEEEeecCCe-EEEccCCcCcEEEeccccHHHHHHH---------------hhccCceeEEEeccc---CCeEEEecCC
Confidence            56667789999 7899999999999997665555566               899999999999995   7788999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC--CCcEEEEecCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTT--FGDLLRSLDPPSGFA  495 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~--~g~~~~~l~~~~~~~  495 (540)
                      |+.+++||+.+.           .....+.+|++.|.|.+|+|-. .+++|||.||+|++|+.  .+..+.++. |+.  
T Consensus       132 d~v~k~~d~s~a-----------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~--  197 (487)
T KOG0310|consen  132 DKVVKYWDLSTA-----------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGC--  197 (487)
T ss_pred             CceEEEEEcCCc-----------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCC--
Confidence            999999999872           2355889999999999999965 48899999999999976  235666665 344  


Q ss_pred             CceEEEEeeCCCEEEEecCCeEEEEecC-C-cEEEeee-cCCcceecC
Q psy1242         496 SPESVVMSREGVIVVNYERGHIAAFTMN-G-NRLRHES-HNDNLQKTA  540 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~~dg~I~lw~~~-g-~~l~~~~-~~~~V~~va  540 (540)
                      +|..+.+-|.|..+++++...|++||+. | +++.... |...|+|++
T Consensus       198 pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~  245 (487)
T KOG0310|consen  198 PVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLR  245 (487)
T ss_pred             ceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEE
Confidence            8999999999999999999999999987 4 5555555 999999984

>KOG0313|consensus

Probab=99.77  E-value=1.8e-17  Score=161.12  Aligned_cols=220  Identities=18%  Similarity=0.202  Sum_probs=155.9

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeee-ccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTH-PTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~-~g~~~~~~~~~~~~~~  329 (540)
                      |-.++-.+....++..++|+|.|.++++|+.........       .+      ++..+.... .-.........-.+.+
T Consensus       192 Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~-------E~------~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  192 HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDEL-------ES------SSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             cccceeEEEecCCCCeEEeecccceeeecccCCCccccc-------cc------cchhhhhhhhhhhcccccCceEEecc
Confidence            555556666777888899999999999999322111000       00      000000000 0000000001111122


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                           ..-.+..+.|++.+  .+.+++||.+|+.||+.+|+...++               . -....+|++.+|    .
T Consensus       259 -----Ht~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~---------------~-~~ksl~~i~~~~----~  311 (423)
T KOG0313|consen  259 -----HTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTL---------------T-TNKSLNCISYSP----L  311 (423)
T ss_pred             -----cccceeeEEEcCCC--ceEeecccceEEEEEeecccceeee---------------e-cCcceeEeeccc----c
Confidence                 22237788888744  3789999999999999999988877               3 245789999999    8


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC-CC-cEEE
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTT-FG-DLLR  486 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~-~g-~~~~  486 (540)
                      ..+|++||.|..+++||-+++.+.        -..+++.||.+.|.++.|+|.. .+|+|||.|+++++|+. +. ..+.
T Consensus       312 ~~Ll~~gssdr~irl~DPR~~~gs--------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply  383 (423)
T KOG0313|consen  312 SKLLASGSSDRHIRLWDPRTGDGS--------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY  383 (423)
T ss_pred             cceeeecCCCCceeecCCCCCCCc--------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence            999999999999999999886543        3678899999999999999965 47899999999999976 43 4899


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEe
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFT  521 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~  521 (540)
                      .+.+|.+  .|-++.|+..+ .|++ |.|.+|+++.
T Consensus       384 dI~~h~D--Kvl~vdW~~~~-~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  384 DIAGHND--KVLSVDWNEGG-LIVSGGADNKLRIFK  416 (423)
T ss_pred             eeccCCc--eEEEEeccCCc-eEEeccCcceEEEec
Confidence            9999988  78999997554 5555 6799999885

>KOG0288|consensus

Probab=99.76  E-value=3.5e-17  Score=160.68  Aligned_cols=230  Identities=17%  Similarity=0.186  Sum_probs=162.7

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-C
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-S  332 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~  332 (540)
                      ++.+.+..+...++.++.|+.+++|+...... .+..+|++.|....    +.....-+++|+.+ .....|.+.... .
T Consensus       222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak----~~~~~~~vVsgs~D-RtiK~WDl~k~~C~  296 (459)
T KOG0288|consen  222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAK----FKLSHSRVVSGSAD-RTIKLWDLQKAYCS  296 (459)
T ss_pred             cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeeh----hhccccceeecccc-chhhhhhhhhhhee
Confidence            56667778888899999999999999987653 34556887775332    33333223444322 122222222111 1


Q ss_pred             cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ...-+.+.|..+..... .+++|..|++||.||.+++.+...+               ..+ +.|+++..++    +|..
T Consensus       297 kt~l~~S~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~sv---------------~~g-g~vtSl~ls~----~g~~  355 (459)
T KOG0288|consen  297 KTVLPGSQCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTRSV---------------PLG-GRVTSLDLSM----DGLE  355 (459)
T ss_pred             ccccccccccceEecce-eeeecccccceEEEeccCCceeeEe---------------ecC-cceeeEeecc----CCeE
Confidence            11111122332222233 5789999999999999999998887               454 4999999999    9999


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc----CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEE
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG----HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRS  487 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~  487 (540)
                      |.+++.|.++.+.|+++..           ..+.+.+    ....++.+.|||++.++++||.||.|+||.. +|++...
T Consensus       356 lLsssRDdtl~viDlRt~e-----------I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~  424 (459)
T KOG0288|consen  356 LLSSSRDDTLKVIDLRTKE-----------IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV  424 (459)
T ss_pred             EeeecCCCceeeeeccccc-----------EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence            9999999999999998733           2222221    1223888999999999999999999999976 8888888


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEe
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFT  521 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~  521 (540)
                      +........|.+++|+|.|..+++++ ++.+.+|.
T Consensus       425 l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  425 LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            88776643599999999999998865 67788883

>KOG0772|consensus

Probab=99.76  E-value=8.2e-18  Score=168.88  Aligned_cols=209  Identities=17%  Similarity=0.224  Sum_probs=147.9

Q ss_pred             eeecccceeeecC-CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242         250 CHVTANTYVTLHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  328 (540)
Q Consensus       250 ~~~~~~~~~~~~~-~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~  328 (540)
                      -|++-++...+++ ....++|||.|+++|+|+....+..                                    ...+.
T Consensus       266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q------------------------------------~qVik  309 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ------------------------------------LQVIK  309 (641)
T ss_pred             CceeeeeccccccCcccceEEecCCCcEEEEecCCchhh------------------------------------eeEEe
Confidence            3555555555444 4567889999999999998653210                                    00001


Q ss_pred             CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc--ceEEEEeccCc
Q psy1242         329 DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG--VVTCLSRSECN  406 (540)
Q Consensus       329 ~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~--~Vt~l~~sp~~  406 (540)
                      .-.....+|.+..++|++||+. ||+|..||+|.+|+..+...-..+            ..-.+|..  .|+||+||+  
T Consensus       310 ~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~------------~vk~AH~~g~~Itsi~FS~--  374 (641)
T KOG0772|consen  310 TKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVM------------KVKDAHLPGQDITSISFSY--  374 (641)
T ss_pred             eccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccce------------EeeeccCCCCceeEEEecc--
Confidence            1112244566788899999995 899999999999997533221111            11167877  899999999  


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC--CCEEEEEEcCCCCEEEEEeC------CCcEEEE
Q psy1242         407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE--QPVTSVAISAELGLVVSGSQ------LGPVLVH  478 (540)
Q Consensus       407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~v~~spdg~~lasgs~------Dg~v~iw  478 (540)
                        ||++|+|-|.|+++++||++...          +|+....+-.  -+-+.++|||+.++|++|+.      .|++.++
T Consensus       375 --dg~~LlSRg~D~tLKvWDLrq~k----------kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~  442 (641)
T KOG0772|consen  375 --DGNYLLSRGFDDTLKVWDLRQFK----------KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF  442 (641)
T ss_pred             --ccchhhhccCCCceeeeeccccc----------cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence              99999999999999999998643          4555544432  24567899999999999863      4667777


Q ss_pred             eC-CCcEEEEecCCCCCCCceEEEEeeC-CCEEEEecCCeEEEE-ecC
Q psy1242         479 TT-FGDLLRSLDPPSGFASPESVVMSRE-GVIVVNYERGHIAAF-TMN  523 (540)
Q Consensus       479 ~~-~g~~~~~l~~~~~~~~v~~l~fspd-g~~l~s~~dg~I~lw-~~~  523 (540)
                      +. +-+.+..+.....  .|..+.|+|- .+++++++||.+++| |++
T Consensus       443 d~~t~d~v~ki~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  443 DRMTLDTVYKIDISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             eccceeeEEEecCCCc--eEEEEeecchhhheeeecCCCceEEEECcc
Confidence            65 7778888876655  7889999997 455566678998876 444

>KOG0643|consensus

Probab=99.75  E-value=4.7e-17  Score=151.73  Aligned_cols=235  Identities=18%  Similarity=0.190  Sum_probs=165.5

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC----ccccc
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP----VPKRH  326 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~----~~~~~  326 (540)
                      |..++=.....-++..++|+|+|.++++||+.+++........    ++...+.|+.++.+++.+.+..-.    .....
T Consensus        51 HtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~----~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fd  126 (327)
T KOG0643|consen   51 HTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN----SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFD  126 (327)
T ss_pred             CCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC----CeeEEEeeccCCcEEEEEehhhcCcceEEEEEE
Confidence            4555555556667888999999999999999987755444333    333456788888777655311100    11111


Q ss_pred             cCCCc------Cccee-----eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE-EEEecccceeeeeeEEEeeccC
Q psy1242         327 LGDNF------SQKLR-----VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV-QIIFGHYGVVTSRIVQIIFGHY  394 (540)
Q Consensus       327 ~~~~~------~~~~~-----v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~~~~~~~l~~h~  394 (540)
                      ++..-      ++-..     -..+...|.|-+++ |++|..||+|.+||+++|+.. ...               +.|.
T Consensus       127 i~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~-ii~Ghe~G~is~~da~~g~~~v~s~---------------~~h~  190 (327)
T KOG0643|consen  127 IRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET-IIAGHEDGSISIYDARTGKELVDSD---------------EEHS  190 (327)
T ss_pred             ccCChhhhcccCceEEecCCccceeeeeecccCCE-EEEecCCCcEEEEEcccCceeeech---------------hhhc
Confidence            11000      00111     12566778999996 689999999999999998544 444               6788


Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGP  474 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~  474 (540)
                      ..|+.+.+++    |..+++|||.|.+.++||..+           .+.+.++. ...+|++.+++|-...++.|+.-..
T Consensus       191 ~~Ind~q~s~----d~T~FiT~s~Dttakl~D~~t-----------l~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA  254 (327)
T KOG0643|consen  191 SKINDLQFSR----DRTYFITGSKDTTAKLVDVRT-----------LEVLKTYT-TERPVNTAAISPLLDHVILGGGQEA  254 (327)
T ss_pred             cccccccccC----CcceEEecccCccceeeeccc-----------eeeEEEee-ecccccceecccccceEEecCCcee
Confidence            8999999999    999999999999999999887           34555554 5678999999998887777664333


Q ss_pred             EEEE---eCCC------------cEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         475 VLVH---TTFG------------DLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       475 v~iw---~~~g------------~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .-|=   ...|            +.+...++|-+  +|++++|+|+|+..++ |.||.|++.-.+
T Consensus       255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG--PINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG--PINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             eeeeeecccccchhhhHHHHHHHHHhcccccccc--CcceeEECCCCcccccCCCCceEEEEEec
Confidence            3332   1233            33456778888  8999999999999888 568998887544

>KOG0267|consensus

Probab=99.75  E-value=2.4e-18  Score=178.76  Aligned_cols=206  Identities=20%  Similarity=0.269  Sum_probs=166.4

Q ss_pred             eeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242         249 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  328 (540)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~  328 (540)
                      .+|..+...-.+-...-.+++|+.|..+.+|.+.-......                                       
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---------------------------------------   65 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---------------------------------------   65 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---------------------------------------
Confidence            45555555545544566789999999999999743111110                                       


Q ss_pred             CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         329 DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       329 ~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                       ...+...  +-|+.++++-. ||++|+.+|+|++||++.++.++++               .||...+.+|.|+|    
T Consensus        66 -~~~hesp--IeSl~f~~~E~-LlaagsasgtiK~wDleeAk~vrtL---------------tgh~~~~~sv~f~P----  122 (825)
T KOG0267|consen   66 -LTGHESP--IESLTFDTSER-LLAAGSASGTIKVWDLEEAKIVRTL---------------TGHLLNITSVDFHP----  122 (825)
T ss_pred             -eeccCCc--ceeeecCcchh-hhcccccCCceeeeehhhhhhhhhh---------------hccccCcceeeecc----
Confidence             1111222  34556666666 7899999999999999999988888               89999999999999    


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEE
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRS  487 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~  487 (540)
                      -+.+.++|+.|+.+++||++.           ..|...+.+|...|.++.|+|+|+++++|+.|.+++||+. .|+++..
T Consensus       123 ~~~~~a~gStdtd~~iwD~Rk-----------~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e  191 (825)
T KOG0267|consen  123 YGEFFASGSTDTDLKIWDIRK-----------KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE  191 (825)
T ss_pred             ceEEeccccccccceehhhhc-----------cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc
Confidence            899999999999999999875           3488999999999999999999999999999999999987 7899999


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEe
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~  529 (540)
                      +..|++  .+..+.|+|..-.++.| .|+++++||++ =..+.+
T Consensus       192 f~~~e~--~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s  233 (825)
T KOG0267|consen  192 FKSHEG--KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS  233 (825)
T ss_pred             cccccc--cccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence            999998  78999999998888884 68999999988 333333

>KOG0306|consensus

Probab=99.75  E-value=7.7e-17  Score=168.28  Aligned_cols=260  Identities=18%  Similarity=0.167  Sum_probs=173.6

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC-----cccc
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP-----VPKR  325 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~-----~~~~  325 (540)
                      |.+-+....++.+..+++|++ ...+++|+..+.++..+.+-...     ....|-+....++.|...+..     ....
T Consensus       372 HR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~-----l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  372 HRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYI-----LASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             chhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccE-----EEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            333344556666777787765 46899999987665543322100     011233333333333211111     0000


Q ss_pred             ccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-eeEEEeeccCcceEEEEecc
Q psy1242         326 HLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-RIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       326 ~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      .+...-.+...++  .++.+||++. +++||.|++|++||..-   +....+...-+.+ ....++ .-.+.|.|+++||
T Consensus       446 l~Eti~AHdgaIW--si~~~pD~~g-~vT~saDktVkfWdf~l---~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Sp  518 (888)
T KOG0306|consen  446 LVETIRAHDGAIW--SISLSPDNKG-FVTGSADKTVKFWDFKL---VVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSP  518 (888)
T ss_pred             hhhhhhcccccee--eeeecCCCCc-eEEecCCcEEEEEeEEE---EeccCcccceeeeeccceEE-eccccEEEEEEcC
Confidence            1111112333443  4555899997 79999999999999641   1111110000000 111222 2467899999999


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE-eCCCc
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH-TTFGD  483 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw-~~~g~  483 (540)
                          ||++|+.+=.|.+|+|+-+++           .+..-.+.||.-+|.|+.+|||+.++++||.|..|+|| ..-|.
T Consensus       519 ----dgk~LaVsLLdnTVkVyflDt-----------lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD  583 (888)
T KOG0306|consen  519 ----DGKLLAVSLLDNTVKVYFLDT-----------LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD  583 (888)
T ss_pred             ----CCcEEEEEeccCeEEEEEecc-----------eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence                999999999999999999887           45677899999999999999999999999999999999 45799


Q ss_pred             EEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEee-ecCCcceecC
Q psy1242         484 LLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHE-SHNDNLQKTA  540 (540)
Q Consensus       484 ~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~-~~~~~V~~va  540 (540)
                      |-+++-.|.+  .|.++.|-|....+.+ |.|+.|+-||-+ =+.+..+ .|...|+|+|
T Consensus       584 CHKS~fAHdD--Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa  641 (888)
T KOG0306|consen  584 CHKSFFAHDD--SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA  641 (888)
T ss_pred             hhhhhhcccC--ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE
Confidence            9999999999  7899999998887766 678999999755 3344444 3777777764

>KOG1408|consensus

Probab=99.75  E-value=4e-17  Score=169.14  Aligned_cols=242  Identities=13%  Similarity=0.152  Sum_probs=164.3

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  342 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  342 (540)
                      |..-++|||.|+|||+|+...+....  .+...+.+.+..--...|+.+-+-- +.......+......+....  +.|+
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~--vyrRNils~~l~ki~y~d~~~q~~~-d~~~~~fdka~~s~~d~r~G--~R~~  465 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQ--VYRRNILSANLSKIPYEDSTQQIMH-DASAGIFDKALVSTCDSRFG--FRAL  465 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccc--eeecccchhhhhcCccccCchhhhh-hccCCcccccchhhcCcccc--eEEE
Confidence            34458899999999999987532111  1110111111110111222111000 00011112222223333333  5677


Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------------eeEEEee
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------------RIVQIIF  391 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------------~~~~~l~  391 (540)
                      +++|+|++ ||+|..-|+++||+++.-+.+..+++|...|.+                               ..++++.
T Consensus       466 ~vSp~gqh-LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld  544 (1080)
T KOG1408|consen  466 AVSPDGQH-LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD  544 (1080)
T ss_pred             EECCCcce-ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence            77999998 699999999999999988888888899888855                               3456778


Q ss_pred             ccCcceEEEEeccCcc---------------------------------------------CCCcEEEEEeCCCcEEEEE
Q psy1242         392 GHYGVVTCLSRSECNI---------------------------------------------TADCFIASGSADCTVLLWH  426 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~---------------------------------------------~dg~~l~sgs~DgtV~lWd  426 (540)
                      +|...|++|.|.-...                                             ...+++++++.|..|+|++
T Consensus       545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~  624 (1080)
T KOG1408|consen  545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD  624 (1080)
T ss_pred             ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence            8888888888754100                                             0122566666666666766


Q ss_pred             cCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEE
Q psy1242         427 WNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVM  502 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~f  502 (540)
                      +..           ++..+.++   +|++....+...|.|-++|+.+.|+++.+++. +|+++.++.+|..  .|+.+.|
T Consensus       625 i~s-----------gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE--~VTG~kF  691 (1080)
T KOG1408|consen  625 IES-----------GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE--AVTGVKF  691 (1080)
T ss_pred             ccc-----------cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch--heeeeee
Confidence            655           34455554   47778889999999999999999999998765 9999999999998  7899999


Q ss_pred             eeCCCEEEE-ecCCeEEEEecC
Q psy1242         503 SREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       503 spdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .+|.+.|++ ++||.|.+|.+.
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             cccchhheeecCCceEEEEECc
Confidence            999999887 679999999865

>KOG0289|consensus

Probab=99.74  E-value=2e-16  Score=156.11  Aligned_cols=249  Identities=17%  Similarity=0.173  Sum_probs=176.9

Q ss_pred             eeEEEecCCCCCe----eeecccceeeecCCcEEEEEccCcceEEEEcCCCCC-cccCCCCcCCCCCCCCCccccCCCCe
Q psy1242         237 VCMSLKFPSNSPI----CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPIL  311 (540)
Q Consensus       237 ~~~~~~f~~~~~~----~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~-~~~~~~~~~~v~~~~~~~~~s~D~~l  311 (540)
                      .......+.+.-+    -|..+++.+.+.++...++++|.|..+++|...... ......|.+.|.    .++..+.|.+
T Consensus       242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~----~ls~h~tgeY  317 (506)
T KOG0289|consen  242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT----GLSLHPTGEY  317 (506)
T ss_pred             ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce----eeeeccCCcE
Confidence            4444444444332    255567777888888899999999999999976544 333445665553    3444555544


Q ss_pred             eeccCCCCC-----CccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeee
Q psy1242         312 THPTSNNNA-----PVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRI  386 (540)
Q Consensus       312 ~~~g~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~  386 (540)
                      +.+.+++..     ....+++....+....+...+.+|+|||- |+++|..|+.|+|||+.++..+..+           
T Consensus       318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~F-----------  385 (506)
T KOG0289|consen  318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKF-----------  385 (506)
T ss_pred             EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCccccccC-----------
Confidence            433322111     11122222222334456688999999998 7999999999999999988877777           


Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCE
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGL  465 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~  465 (540)
                          .+|.++|+.|+|+.    +|-+|++++.|+.|++||++...           ...++.- ...+|.+++|.+.|.+
T Consensus       386 ----pght~~vk~i~FsE----NGY~Lat~add~~V~lwDLRKl~-----------n~kt~~l~~~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  386 ----PGHTGPVKAISFSE----NGYWLATAADDGSVKLWDLRKLK-----------NFKTIQLDEKKEVNSLSFDQSGTY  446 (506)
T ss_pred             ----CCCCCceeEEEecc----CceEEEEEecCCeEEEEEehhhc-----------ccceeeccccccceeEEEcCCCCe
Confidence                89999999999999    99999999999999999998732           2333322 2237999999999999


Q ss_pred             EEEEeCCCcEEEEeC---CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEec
Q psy1242         466 VVSGSQLGPVLVHTT---FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  522 (540)
Q Consensus       466 lasgs~Dg~v~iw~~---~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~  522 (540)
                      ++.++.|=.|.++..   ...++..+..|.+  ..+.+.|..+.+++++++ |..++++.+
T Consensus       447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg--~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  447 LGIAGSDLQVYICKKKTKSWTEIKELADHSG--LSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEeecceeEEEEEecccccceeeehhhhccc--ccceeeecccceEEeeccchhheEEeec
Confidence            999977766666542   4567777777776  678999999999999865 566676653

>KOG0641|consensus

Probab=99.74  E-value=4.1e-16  Score=142.07  Aligned_cols=235  Identities=13%  Similarity=0.111  Sum_probs=157.9

Q ss_pred             eeeecCCcEEEEEccCcceEEEEcCC--CCCccc----CCCCcCCCCCCCCCccccCC----CCeeecc-CCCCCC-ccc
Q psy1242         257 YVTLHMPSVVTVTANHQFAINRWNPD--YAASIQ----SPSYAETPGSPPGNLPLTLD----PILTHPT-SNNNAP-VPK  324 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D~tv~~W~~~--~~~~~~----~~~~~~~v~~~~~~~~~s~D----~~l~~~g-~~~~~~-~~~  324 (540)
                      .....+.+.+++|+|.|.+|++--.+  +....+    ..-|.+.+++    +.|-.|    +.+++++ ..+-+. ...
T Consensus        94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtird----l~fld~~~s~~~il~s~gagdc~iy~td  169 (350)
T KOG0641|consen   94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRD----LAFLDDPESGGAILASAGAGDCKIYITD  169 (350)
T ss_pred             EEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceee----eEEecCCCcCceEEEecCCCcceEEEee
Confidence            34455566679999999999985433  322211    1224444432    334333    2344433 222111 111


Q ss_pred             cccCCCcCc--ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEec--ccceeeeeeEEEeeccCcceEEE
Q psy1242         325 RHLGDNFSQ--KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFG--HYGVVTSRIVQIIFGHYGVVTCL  400 (540)
Q Consensus       325 ~~~~~~~~~--~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~--~~~~v~~~~~~~l~~h~~~Vt~l  400 (540)
                      -..+..+..  .....+.++ ++-+|- ++++|+.|.+||+||++-..++.++..  |...          -..+.|.++
T Consensus       170 c~~g~~~~a~sghtghilal-yswn~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g----------lessavaav  237 (350)
T KOG0641|consen  170 CGRGQGFHALSGHTGHILAL-YSWNGA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG----------LESSAVAAV  237 (350)
T ss_pred             cCCCCcceeecCCcccEEEE-EEecCc-EEEccCCCceEEEEeeeccceeeeccCcccCCC----------cccceeEEE
Confidence            111111110  111112222 233555 799999999999999998888777621  1100          023679999


Q ss_pred             EeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         401 SRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       401 ~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                      +..|    .|++|++|-.|.++.++|++.           +.+++.+..|...|.|+.|||...++++||.|..|++-+.
T Consensus       238 ~vdp----sgrll~sg~~dssc~lydirg-----------~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  238 AVDP----SGRLLASGHADSSCMLYDIRG-----------GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             EECC----CcceeeeccCCCceEEEEeeC-----------CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence            9999    999999999999999999987           5789999999999999999999999999999999999877


Q ss_pred             CCcEEE-----EecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         481 FGDLLR-----SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       481 ~g~~~~-----~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      .|.+..     ....|++  .+..+.|+|..--+++ +.|.++.+|.++|
T Consensus       303 qgdla~el~~~vv~ehkd--k~i~~rwh~~d~sfisssadkt~tlwa~~~  350 (350)
T KOG0641|consen  303 QGDLAHELPIMVVAEHKD--KAIQCRWHPQDFSFISSSADKTATLWALNG  350 (350)
T ss_pred             ccchhhcCceEEEEeccC--ceEEEEecCccceeeeccCcceEEEeccCC
Confidence            665433     3445776  5678999998765555 6689999998875

>KOG0288|consensus

Probab=99.74  E-value=3.6e-17  Score=160.59  Aligned_cols=234  Identities=15%  Similarity=0.126  Sum_probs=156.5

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC--------ccccccCCCcCcceee
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP--------VPKRHLGDNFSQKLRV  337 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~--------~~~~~~~~~~~~~~~v  337 (540)
                      .++|++.|..|++|+....+..-..+..++.+ ....+.+-.++..+.+.+.+.+.        ....++.++.++    
T Consensus       189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk----  263 (459)
T KOG0288|consen  189 TLATGGSDRIIKLWNVLGEKSELISTLAGSLG-NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK----  263 (459)
T ss_pred             hhhhcchhhhhhhhhcccchhhhhhhhhccCC-CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc----
Confidence            39999999999999998766222222222211 11234455555444433222211        122233333332    


Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                       ++++.+...... +++|+.|.++++||++.+.+.+++.                -...+..|+.+      +..++||-
T Consensus       264 -Vt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l----------------~~S~cnDI~~~------~~~~~SgH  319 (459)
T KOG0288|consen  264 -VTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVL----------------PGSQCNDIVCS------ISDVISGH  319 (459)
T ss_pred             -eeeehhhccccc-eeeccccchhhhhhhhhhheecccc----------------ccccccceEec------ceeeeecc
Confidence             667766666654 7999999999999999988887761                12344455543      35788999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCC--CC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPS--GF  494 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~--~~  494 (540)
                      .|++|++||++.           ..+......+. .|+++..+++|..+.+++.|.++.+.+. +......+....  ..
T Consensus       320 ~DkkvRfwD~Rs-----------~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a  387 (459)
T KOG0288|consen  320 FDKKVRFWDIRS-----------ADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA  387 (459)
T ss_pred             cccceEEEeccC-----------CceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence            999999999887           45667776665 8999999999999999999999998766 444444444321  11


Q ss_pred             CCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee--cCC-cceecC
Q psy1242         495 ASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES--HND-NLQKTA  540 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~--~~~-~V~~va  540 (540)
                      ...+.+.|||++.|+++| .||.|+||++. |++...++  +.. .|++++
T Consensus       388 sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~  438 (459)
T KOG0288|consen  388 SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS  438 (459)
T ss_pred             cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence            246889999999999996 58999999998 45444443  322 577653

>KOG0296|consensus

Probab=99.74  E-value=2.2e-16  Score=153.05  Aligned_cols=161  Identities=16%  Similarity=0.205  Sum_probs=139.6

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .+.+++.+|+.+ ++|+|+.|..-.+|++.+|.....+               .+|.+.|+|+.|+.    +|.+|+||+
T Consensus        66 svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~el---------------tgHKDSVt~~~Fsh----dgtlLATGd  125 (399)
T KOG0296|consen   66 SVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGEL---------------TGHKDSVTCCSFSH----DGTLLATGD  125 (399)
T ss_pred             ceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEe---------------cCCCCceEEEEEcc----CceEEEecC
Confidence            377888899777 7899999999999999999977777               89999999999999    999999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFAS  496 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~  496 (540)
                      .+|.|+||...++           .....+..--..+.-+.|+|.+..|+.|+.||.+.+|.. ++...+.+.+|..  +
T Consensus       126 msG~v~v~~~stg-----------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~--~  192 (399)
T KOG0296|consen  126 MSGKVLVFKVSTG-----------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS--P  192 (399)
T ss_pred             CCccEEEEEcccC-----------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC--C
Confidence            9999999998873           334445455567888999999999999999999999976 5578889999988  7


Q ss_pred             ceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee
Q psy1242         497 PESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       497 v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~  531 (540)
                      +++=.|.|+|+.++++ +||+|++|++. |..+....
T Consensus       193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             cccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            8999999999999985 68999999987 77766554

>KOG0643|consensus

Probab=99.73  E-value=6.3e-16  Score=144.25  Aligned_cols=212  Identities=13%  Similarity=0.172  Sum_probs=164.6

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEE
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH  339 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~  339 (540)
                      +..++-+|.||+.|.++.+|-...+++.                                        +..-.+...  +
T Consensus        18 yN~eGDLlFscaKD~~~~vw~s~nGerl----------------------------------------Gty~GHtGa--v   55 (327)
T KOG0643|consen   18 YNREGDLLFSCAKDSTPTVWYSLNGERL----------------------------------------GTYDGHTGA--V   55 (327)
T ss_pred             ecCCCcEEEEecCCCCceEEEecCCcee----------------------------------------eeecCCCce--E
Confidence            3334444999999999999986443322                                        112222223  4


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-  418 (540)
                      -|+.+.-+.++ +++|+.|.++++||+.+|+.+..+                .-..+|..+.|++    +|++++.... 
T Consensus        56 W~~Did~~s~~-liTGSAD~t~kLWDv~tGk~la~~----------------k~~~~Vk~~~F~~----~gn~~l~~tD~  114 (327)
T KOG0643|consen   56 WCCDIDWDSKH-LITGSADQTAKLWDVETGKQLATW----------------KTNSPVKRVDFSF----GGNLILASTDK  114 (327)
T ss_pred             EEEEecCCcce-eeeccccceeEEEEcCCCcEEEEe----------------ecCCeeEEEeecc----CCcEEEEEehh
Confidence            45555777885 699999999999999999999887                2457899999999    8887776643 


Q ss_pred             ----CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CC-cEEEEecCCC
Q psy1242         419 ----DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FG-DLLRSLDPPS  492 (540)
Q Consensus       419 ----DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g-~~~~~l~~~~  492 (540)
                          .+.|.++|++......    ...+|...+..+.+.++.+-|.|-+++|++|..||.|.+|+. +| +.+.+.+.|.
T Consensus       115 ~mg~~~~v~~fdi~~~~~~~----~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~  190 (327)
T KOG0643|consen  115 QMGYTCFVSVFDIRDDSSDI----DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS  190 (327)
T ss_pred             hcCcceEEEEEEccCChhhh----cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc
Confidence                4689999988544222    234678888899999999999999999999999999999976 66 5567777888


Q ss_pred             CCCCceEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242         493 GFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHNDNLQKTA  540 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~~~~~~V~~va  540 (540)
                      .  .|+.+.+++|..++++++ |.+.++||.. =..++++..+.+|++.|
T Consensus       191 ~--~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  191 S--KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             c--ccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence            7  789999999999999864 7899999987 56778888888887754

>KOG0646|consensus

Probab=99.73  E-value=9.9e-17  Score=159.79  Aligned_cols=180  Identities=16%  Similarity=0.310  Sum_probs=140.2

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .+.|++-+|+|.+ ++.|...|.+.+|.+.+|+.+..+               .+|-..|+|+.|+-    ||.+|+|||
T Consensus        83 ~v~al~s~n~G~~-l~ag~i~g~lYlWelssG~LL~v~---------------~aHYQ~ITcL~fs~----dgs~iiTgs  142 (476)
T KOG0646|consen   83 PVHALASSNLGYF-LLAGTISGNLYLWELSSGILLNVL---------------SAHYQSITCLKFSD----DGSHIITGS  142 (476)
T ss_pred             ceeeeecCCCceE-EEeecccCcEEEEEeccccHHHHH---------------HhhccceeEEEEeC----CCcEEEecC
Confidence            3889999999996 566768999999999999999888               89999999999998    999999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeC-CCcEEEEec-----
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL--GLVVSGSQLGPVLVHTT-FGDLLRSLD-----  489 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg--~~lasgs~Dg~v~iw~~-~g~~~~~l~-----  489 (540)
                      .||.|.+|++...-..  ......+|+..+.+|+-+|+.+...+.|  ..++|+|.|.++++|+. .|.++.++.     
T Consensus       143 kDg~V~vW~l~~lv~a--~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si  220 (476)
T KOG0646|consen  143 KDGAVLVWLLTDLVSA--DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSI  220 (476)
T ss_pred             CCccEEEEEEEeeccc--ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcc
Confidence            9999999997431100  0011357888999999999998877653  47889999999999976 454443321     


Q ss_pred             ----------------------------------------------------CCCCCCCceEEEEeeCCCEEEEec-CCe
Q psy1242         490 ----------------------------------------------------PPSGFASPESVVMSREGVIVVNYE-RGH  516 (540)
Q Consensus       490 ----------------------------------------------------~~~~~~~v~~l~fspdg~~l~s~~-dg~  516 (540)
                                                                          +|.+...|+|++++-||..|++|+ ||.
T Consensus       221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~  300 (476)
T KOG0646|consen  221 KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK  300 (476)
T ss_pred             eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence                                                                233323689999999999999975 899


Q ss_pred             EEEEecC-CcEEEeee-cCCcceec
Q psy1242         517 IAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       517 I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                      |++||+. .+.++++. ..++|+.+
T Consensus       301 VcvWdi~S~Q~iRtl~~~kgpVtnL  325 (476)
T KOG0646|consen  301 VCVWDIYSKQCIRTLQTSKGPVTNL  325 (476)
T ss_pred             EEEEecchHHHHHHHhhhcccccee
Confidence            9999987 45566665 55666543

>KOG0277|consensus

Probab=99.73  E-value=6.4e-17  Score=149.86  Aligned_cols=168  Identities=16%  Similarity=0.166  Sum_probs=134.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...++|++.....+++++.||++++||+.. .++++.+               +.|...|.++.|++.   .+..++++|
T Consensus        63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~---------------kEH~~EV~Svdwn~~---~r~~~ltsS  124 (311)
T KOG0277|consen   63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF---------------KEHKREVYSVDWNTV---RRRIFLTSS  124 (311)
T ss_pred             eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH---------------HhhhhheEEeccccc---cceeEEeec
Confidence            456788888887888999999999999643 2455566               889999999999995   778889999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC--CCcEEEEecCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT--FGDLLRSLDPPSGF  494 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~--~g~~~~~l~~~~~~  494 (540)
                      .|++|++|+...           +..++++.||...|....|+|. +.+++++|.||++++|+.  .|+.+. +..|.. 
T Consensus       125 WD~TiKLW~~~r-----------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~-  191 (311)
T KOG0277|consen  125 WDGTIKLWDPNR-----------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNS-  191 (311)
T ss_pred             cCCceEeecCCC-----------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccc-
Confidence            999999999765           4578999999999999999994 679999999999999975  677666 777875 


Q ss_pred             CCceEEEEeeC-CCEEEEe-cCCeEEEEecC--CcEEEeee-cCCccee
Q psy1242         495 ASPESVVMSRE-GVIVVNY-ERGHIAAFTMN--GNRLRHES-HNDNLQK  538 (540)
Q Consensus       495 ~~v~~l~fspd-g~~l~s~-~dg~I~lw~~~--g~~l~~~~-~~~~V~~  538 (540)
                       .+.++.|+.- ..+|++| .|+.|+.||+.  ...+..+. |.-.|..
T Consensus       192 -Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk  239 (311)
T KOG0277|consen  192 -EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK  239 (311)
T ss_pred             -eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence             6899999864 5566664 58999999986  33444432 5444443

>KOG0305|consensus

Probab=99.73  E-value=1.8e-16  Score=164.05  Aligned_cols=231  Identities=15%  Similarity=0.118  Sum_probs=171.7

Q ss_pred             ccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-C-CcCCCCCCCCCccccCCCCeeeccCCCCCCcc-----ccc
Q psy1242         254 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-S-YAETPGSPPGNLPLTLDPILTHPTSNNNAPVP-----KRH  326 (540)
Q Consensus       254 ~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~-~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~-----~~~  326 (540)
                      ..+.+....++..|+.+-.+++|.+||.......... . |..-|+    ++++.  +..+.+|+.+.....     ...
T Consensus       219 ~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg----~laW~--~~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  219 LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG----SLAWN--SSVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             ceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE----EEecc--CceEEEecCCCcEEEEEEecchh
Confidence            3566677788888999999999999998765543332 2 443332    33444  444444433332211     111


Q ss_pred             cCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         327 LGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       327 ~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                      ... ..+...-.++-+.|++|+++ +|+|+.|+.+.|||....+....+               ..|...|..++|+|- 
T Consensus       293 ~~~-~~~~H~qeVCgLkws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~---------------~~H~aAVKA~awcP~-  354 (484)
T KOG0305|consen  293 VVS-TLQGHRQEVCGLKWSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTF---------------TEHTAAVKALAWCPW-  354 (484)
T ss_pred             hhh-hhhcccceeeeeEECCCCCe-eccCCCccceEeccCCCccccEEE---------------eccceeeeEeeeCCC-
Confidence            111 12223345889999999996 799999999999999777777777               889999999999995 


Q ss_pred             cCCCcEEEEEe--CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEeC-C
Q psy1242         407 ITADCFIASGS--ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG--SQLGPVLVHTT-F  481 (540)
Q Consensus       407 ~~dg~~l~sgs--~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg--s~Dg~v~iw~~-~  481 (540)
                        ....||+|+  .|++|++|+..+           +..+..+. ....|..+.|++..+-|+++  -.++.|.||.. +
T Consensus       355 --q~~lLAsGGGs~D~~i~fwn~~~-----------g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps  420 (484)
T KOG0305|consen  355 --QSGLLATGGGSADRCIKFWNTNT-----------GARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS  420 (484)
T ss_pred             --ccCceEEcCCCcccEEEEEEcCC-----------CcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence              667899875  699999999876           34555553 45679999999998766664  45678899965 7


Q ss_pred             CcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         482 GDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       482 g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      .+.+..+.+|..  .|..++++|||..+++ +.|.++++|++-+
T Consensus       421 ~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  421 MKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             cceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            888999999998  7899999999999998 4699999998764

>KOG0300|consensus

Probab=99.73  E-value=8.3e-17  Score=153.00  Aligned_cols=173  Identities=18%  Similarity=0.209  Sum_probs=152.2

Q ss_pred             EEEEEEecCCcEEEEEccCCeEEEEEecccceeee---------------------------------------------
Q psy1242         350 FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS---------------------------------------------  384 (540)
Q Consensus       350 ~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~---------------------------------------------  384 (540)
                      -++.+++.|.+.+||.+++|+++.++.||.+.|++                                             
T Consensus       161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~  240 (481)
T KOG0300|consen  161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE  240 (481)
T ss_pred             cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence            37899999999999999999999999999988864                                             


Q ss_pred             ----------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCc
Q psy1242         385 ----------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPT  442 (540)
Q Consensus       385 ----------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~  442 (540)
                                            ..+..+.+|.+.|.+..|-.    .|+.++|+|.|.+..+||+.+           ++
T Consensus       241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~----gg~Q~vTaSWDRTAnlwDVEt-----------ge  305 (481)
T KOG0300|consen  241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA----GGQQMVTASWDRTANLWDVET-----------GE  305 (481)
T ss_pred             hcccccccccccccccCCceeeeeeeeeeccccceEehhhhc----Ccceeeeeeccccceeeeecc-----------Cc
Confidence                                  23466789999999999988    899999999999999999987           67


Q ss_pred             ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEE
Q psy1242         443 PRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF--GDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAF  520 (540)
Q Consensus       443 ~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~--g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw  520 (540)
                      ++..+.||+...+.++-+|..++++++|.|-+.++|+..  -+-+..+++|.+  .|+++.|..+.+++..++|.+|++|
T Consensus       306 ~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd--tVTS~vF~~dd~vVSgSDDrTvKvW  383 (481)
T KOG0300|consen  306 VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD--TVTSVVFNTDDRVVSGSDDRTVKVW  383 (481)
T ss_pred             eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc--ceeEEEEecCCceeecCCCceEEEe
Confidence            899999999999999999999999999999999999863  456789999999  7899999998888777889999999


Q ss_pred             ecC--CcEEEeeecCCcceec
Q psy1242         521 TMN--GNRLRHESHNDNLQKT  539 (540)
Q Consensus       521 ~~~--g~~l~~~~~~~~V~~v  539 (540)
                      |+.  ...|+++..+.+++-+
T Consensus       384 dLrNMRsplATIRtdS~~NRv  404 (481)
T KOG0300|consen  384 DLRNMRSPLATIRTDSPANRV  404 (481)
T ss_pred             eeccccCcceeeecCCcccee
Confidence            987  5677887777766554

>KOG0294|consensus

Probab=99.72  E-value=7.9e-16  Score=146.67  Aligned_cols=223  Identities=13%  Similarity=0.090  Sum_probs=157.7

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN  330 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~  330 (540)
                      |..+++.+..  .+..+||+|.|.+|+++|.......                                        +..
T Consensus        42 H~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql----------------------------------------g~l   79 (362)
T KOG0294|consen   42 HAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL----------------------------------------GIL   79 (362)
T ss_pred             cccceeEEEe--cceeEeccCCCCcEEEEeccchhhh----------------------------------------cce
Confidence            4444444333  3455899999999999997542211                                        111


Q ss_pred             cCcceeeEEEEEEEecCCC--EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         331 FSQKLRVRHNCFVTTVDSR--FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spdg~--~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                      ..+  ..+++|+.|.++..  + |.+|+.||.|.+|++..-+++..+               ++|.+.|+.|+.+|    
T Consensus        80 l~H--agsitaL~F~~~~S~sh-LlS~sdDG~i~iw~~~~W~~~~sl---------------K~H~~~Vt~lsiHP----  137 (362)
T KOG0294|consen   80 LSH--AGSITALKFYPPLSKSH-LLSGSDDGHIIIWRVGSWELLKSL---------------KAHKGQVTDLSIHP----  137 (362)
T ss_pred             ecc--ccceEEEEecCCcchhh-eeeecCCCcEEEEEcCCeEEeeee---------------cccccccceeEecC----
Confidence            111  11356666666653  4 578899999999999988888888               88999999999999    


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCC-C---------CCCc--------ceEEec----------cCCCCEEEEEEc
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGE-T---------DTPT--------PRATLT----------GHEQPVTSVAIS  460 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~-~---------~~~~--------~~~~l~----------~h~~~V~~v~~s  460 (540)
                      .|++-++.+.|+.++.|++-.+....+.. .         ..+.        .+..+.          .....+.|+.|-
T Consensus       138 S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l  217 (362)
T KOG0294|consen  138 SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL  217 (362)
T ss_pred             CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec
Confidence            89999999999999999986544322110 0         0000        000000          011235555554


Q ss_pred             CCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEE--eeCCCEEEE-ecCCeEEEEecCCc------EEEee
Q psy1242         461 AELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVM--SREGVIVVN-YERGHIAAFTMNGN------RLRHE  530 (540)
Q Consensus       461 pdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~f--spdg~~l~s-~~dg~I~lw~~~g~------~l~~~  530 (540)
                       ++..+++|..|+.|.+|+. ++.+...+..|..  .|..+.+  .|++.+|++ ++||.|++||++-+      +|+..
T Consensus       218 -~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~  294 (362)
T KOG0294|consen  218 -DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL  294 (362)
T ss_pred             -CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe
Confidence             5667889999999999876 5888899999998  7888885  467889988 68999999999854      78888


Q ss_pred             ecCCcceecC
Q psy1242         531 SHNDNLQKTA  540 (540)
Q Consensus       531 ~~~~~V~~va  540 (540)
                      ..+.+++|++
T Consensus       295 n~~~RltCl~  304 (362)
T KOG0294|consen  295 NTNVRLTCLR  304 (362)
T ss_pred             ecCCccceee
Confidence            8888888874

>KOG1407|consensus

Probab=99.72  E-value=2.8e-16  Score=146.21  Aligned_cols=179  Identities=13%  Similarity=0.103  Sum_probs=138.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +-.++|.|...-++++++.|.+|++||.+.++++..++               . .+.-.-+.|+|    +|++++.++.
T Consensus        67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~---------------~-~~eni~i~wsp----~g~~~~~~~k  126 (313)
T KOG1407|consen   67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE---------------T-KGENINITWSP----DGEYIAVGNK  126 (313)
T ss_pred             hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee---------------c-cCcceEEEEcC----CCCEEEEecC
Confidence            34445577766689999999999999999999998872               2 23334578999    8999999999


Q ss_pred             CCcEEEEEcCCCccccc-----------------------C-------CCCCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242         419 DCTVLLWHWNARTQSIV-----------------------G-------ETDTPTPRATLTGHEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~-----------------------~-------~~~~~~~~~~l~~h~~~V~~v~~spdg~~las  468 (540)
                      |..|...|.++......                       |       +-.+.++++.+++|.....||.|+|+|+++|+
T Consensus       127 dD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~  206 (313)
T KOG1407|consen  127 DDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT  206 (313)
T ss_pred             cccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEee
Confidence            99999888765321110                       0       01246788999999999999999999999999


Q ss_pred             EeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         469 GSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       469 gs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      |+.|..+-+|+. .--+++.+..+.-  +|..|.||.||++||+++ |..|-|=.+. |..+-...++++...|
T Consensus       207 GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tV  278 (313)
T KOG1407|consen  207 GSADALVSLWDVDELICERCISRLDW--PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTV  278 (313)
T ss_pred             ccccceeeccChhHhhhheeeccccC--ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeE
Confidence            999999999987 5567888887776  899999999999999965 6667665554 7776666666555444

>KOG0268|consensus

Probab=99.72  E-value=3.2e-17  Score=158.56  Aligned_cols=155  Identities=12%  Similarity=0.082  Sum_probs=127.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.|+.++|--..+|++|..|++|.+||++.+.+++.+.                -...-+.|+|+|    .+--+++|+.
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi----------------~~mRTN~IswnP----eafnF~~a~E  249 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI----------------LTMRTNTICWNP----EAFNFVAANE  249 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceee----------------eeccccceecCc----cccceeeccc
Confidence            67888999999999999999999999999999887761                233457899999    8888999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCce
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~  498 (540)
                      |..+..+|++...          .++....+|.+.|.+|+|||.|+-++|||.|.+|+|+......-+.+.....-..|.
T Consensus       250 D~nlY~~DmR~l~----------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~  319 (433)
T KOG0268|consen  250 DHNLYTYDMRNLS----------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVF  319 (433)
T ss_pred             cccceehhhhhhc----------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheee
Confidence            9999999998643          688899999999999999999999999999999999865333222222111111578


Q ss_pred             EEEEeeCCCEEEEec-CCeEEEEecC
Q psy1242         499 SVVMSREGVIVVNYE-RGHIAAFTMN  523 (540)
Q Consensus       499 ~l~fspdg~~l~s~~-dg~I~lw~~~  523 (540)
                      ++.||.|.+++++|+ |+.|++|-.+
T Consensus       320 ~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  320 CVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             EEEEeccccEEEecCCCcceeeeecc
Confidence            999999999999975 6999999866

>KOG0973|consensus

Probab=99.71  E-value=1.4e-16  Score=173.16  Aligned_cols=176  Identities=19%  Similarity=0.223  Sum_probs=139.8

Q ss_pred             EEEEEEEecCCCEEEEEEe--cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGF--WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs--~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+..+.++|||.. +|+|+  .|+.++||+.+.-  ....+. .+...-+.+.+...|.+.|+|+.|+|    ||++||+
T Consensus        15 ~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~v--l~~~~~-~~~~l~k~l~~m~~h~~sv~CVR~S~----dG~~lAs   86 (942)
T KOG0973|consen   15 SIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPV--LDEKEE-KNENLPKHLCTMDDHDGSVNCVRFSP----DGSYLAS   86 (942)
T ss_pred             eEEEEEecCCcee-EecCCccccccceeeccccc--cchhhh-hhcccchhheeeccccCceeEEEECC----CCCeEee
Confidence            3677888999996 79999  8999999987521  100000 00000122334478999999999999    9999999


Q ss_pred             EeCCCcEEEEEcCC-Cccccc------CCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEE
Q psy1242         416 GSADCTVLLWHWNA-RTQSIV------GETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRS  487 (540)
Q Consensus       416 gs~DgtV~lWd~~~-~~~~~~------~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~  487 (540)
                      ||.|+.|.||+... ..+...      ...+..+++..+.+|...|..++|+|++.++||++.|++|.||+. +.+.+.+
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v  166 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV  166 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence            99999999999773 111111      113456688899999999999999999999999999999999976 8899999


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      +++|.+  .|..+.|.|-|+++|+ ++|++|++|.+.
T Consensus       167 l~~H~s--~VKGvs~DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  167 LRGHQS--LVKGVSWDPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             eecccc--cccceEECCccCeeeeecCCceEEEEEcc
Confidence            999999  7899999999999999 889999999855

>KOG0305|consensus

Probab=99.71  E-value=3.3e-16  Score=162.21  Aligned_cols=228  Identities=18%  Similarity=0.180  Sum_probs=170.9

Q ss_pred             cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC-----ccccccCCCcCcceeeEEEEEEEecC
Q psy1242         273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP-----VPKRHLGDNFSQKLRVRHNCFVTTVD  347 (540)
Q Consensus       273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~spd  347 (540)
                      ...|.+|+..++.........   .....++.++++|..++.|.....+     ...+++..... ....++.|++|+  
T Consensus       196 g~~vylW~~~s~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-~h~~rvg~laW~--  269 (484)
T KOG0305|consen  196 GQSVYLWSASSGSVTELCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-SHASRVGSLAWN--  269 (484)
T ss_pred             cceEEEEecCCCceEEeEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-CcCceeEEEecc--
Confidence            457899998876643333331   3334467899999988887543333     12222222222 134457788877  


Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEE-EecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQI-IFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~-l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      +. ++.+|+.|+.|..+|++..+.... +               .+|...|..++|++    |+.++++|+.|+.|.|||
T Consensus       270 ~~-~lssGsr~~~I~~~dvR~~~~~~~~~---------------~~H~qeVCgLkws~----d~~~lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  270 SS-VLSSGSRDGKILNHDVRISQHVVSTL---------------QGHRQEVCGLKWSP----DGNQLASGGNDNVVFIWD  329 (484)
T ss_pred             Cc-eEEEecCCCcEEEEEEecchhhhhhh---------------hcccceeeeeEECC----CCCeeccCCCccceEecc
Confidence            33 579999999999999997765433 4               78999999999999    999999999999999999


Q ss_pred             cCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEe--CCCcEEEEeC-CCcEEEEecCCCCCCCceEEEE
Q psy1242         427 WNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGS--QLGPVLVHTT-FGDLLRSLDPPSGFASPESVVM  502 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs--~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~f  502 (540)
                      ...           ..++..+..|...|..++|+|- ..+||+|+  .|++|++|+. +|..+..+....   .|++|.|
T Consensus       330 ~~~-----------~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs---QVcsL~W  395 (484)
T KOG0305|consen  330 GLS-----------PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS---QVCSLIW  395 (484)
T ss_pred             CCC-----------ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---ceeeEEE
Confidence            844           4678999999999999999995 45888864  6999999966 888888776544   6999999


Q ss_pred             eeCCCEEEEe---cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         503 SREGVIVVNY---ERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       503 spdg~~l~s~---~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      ++..+.|+++   +++.|.||+.. -++++.+. |..+|..++
T Consensus       396 sk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la  438 (484)
T KOG0305|consen  396 SKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA  438 (484)
T ss_pred             cCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE
Confidence            9999877763   46889999975 45555554 888877654

>KOG0640|consensus

Probab=99.71  E-value=2.3e-16  Score=149.77  Aligned_cols=173  Identities=15%  Similarity=0.180  Sum_probs=136.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.|+.|+|.|.+ ++.|....++++||+++.++...-..            -.+|.+.|+++.+++    .|++.+|||.
T Consensus       219 vrsiSfHPsGef-llvgTdHp~~rlYdv~T~QcfvsanP------------d~qht~ai~~V~Ys~----t~~lYvTaSk  281 (430)
T KOG0640|consen  219 VRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSANP------------DDQHTGAITQVRYSS----TGSLYVTASK  281 (430)
T ss_pred             eeeEeecCCCce-EEEecCCCceeEEeccceeEeeecCc------------ccccccceeEEEecC----CccEEEEecc
Confidence            678888999997 57888889999999998887644311            158999999999999    8999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQ-PVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA  495 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~-~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~  495 (540)
                      ||.|+|||--           +.+|+.++ ..|.+ .|.+..|..+|++++|.+.|.++++|.. +|+++....+.....
T Consensus       282 DG~IklwDGV-----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg  350 (430)
T KOG0640|consen  282 DGAIKLWDGV-----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTG  350 (430)
T ss_pred             CCcEEeeccc-----------cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCccc
Confidence            9999999943           35677777 45654 7889999999999999999999999955 899988887653211


Q ss_pred             ---CceEEEEeeCCCEEEEec--CCeEEEEecC-CcE--EEeeecCCcceec
Q psy1242         496 ---SPESVVMSREGVIVVNYE--RGHIAAFTMN-GNR--LRHESHNDNLQKT  539 (540)
Q Consensus       496 ---~v~~l~fspdg~~l~s~~--dg~I~lw~~~-g~~--l~~~~~~~~V~~v  539 (540)
                         --+...|+....+++.-+  .+.++.||.. +..  +..+.|++.+.++
T Consensus       351 rq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  351 RQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             chhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence               124577888888888854  4778999865 443  4455688888765

>KOG0302|consensus

Probab=99.71  E-value=2.1e-16  Score=153.66  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=125.3

Q ss_pred             EEEEEec--CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTV--DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~sp--dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ..+.|||  .|+  +++|..-+.|++|...+|.-...            ...+.+|...|-.+.|||.   ....|+|||
T Consensus       215 y~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd------------~~Pf~gH~~SVEDLqWSpt---E~~vfaScS  277 (440)
T KOG0302|consen  215 YGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVD------------QRPFTGHTKSVEDLQWSPT---EDGVFASCS  277 (440)
T ss_pred             eeeecccccccc--cccCccccceEeeeeccCceeec------------CccccccccchhhhccCCc---cCceEEeee
Confidence            4456677  454  57887788899999888653211            1123689999999999995   667999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC----CCcEEEEecCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT----FGDLLRSLDPPSG  493 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~----~g~~~~~l~~~~~  493 (540)
                      .||+|+|||++.++..        .++ ..+.|.+.|+.|.|+..-.+||+|+.||+++||+.    .++++.+++.|..
T Consensus       278 ~DgsIrIWDiRs~~~~--------~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~  348 (440)
T KOG0302|consen  278 CDGSIRIWDIRSGPKK--------AAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA  348 (440)
T ss_pred             cCceEEEEEecCCCcc--------cee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence            9999999999975432        233 33899999999999998889999999999999965    5688999999999


Q ss_pred             CCCceEEEEeeCC--CEEEEecCCeEEEEecC
Q psy1242         494 FASPESVVMSREG--VIVVNYERGHIAAFTMN  523 (540)
Q Consensus       494 ~~~v~~l~fspdg--~~l~s~~dg~I~lw~~~  523 (540)
                        +|++|.|+|..  -+.++|+|.+|.+||+.
T Consensus       349 --pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  349 --PITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             --CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence              99999999864  35555889999999975

>KOG0264|consensus

Probab=99.71  E-value=5.2e-16  Score=154.41  Aligned_cols=161  Identities=14%  Similarity=0.170  Sum_probs=130.9

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEE-EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV-QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..++|++.....+++|+.|++|++||+...... ..+         .....+.+|.+.|..++|++.   +...+++++.
T Consensus       181 ~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~---------~p~~~~~~h~~~VeDV~~h~~---h~~lF~sv~d  248 (422)
T KOG0264|consen  181 YGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV---------DPKTIFSGHEDVVEDVAWHPL---HEDLFGSVGD  248 (422)
T ss_pred             cccccccccceeEeeccCCCcEEEEeccccccCCccc---------cceEEeecCCcceehhhcccc---chhhheeecC
Confidence            346778877777899999999999999754321 111         123345899999999999995   7789999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC--CcEEEEecCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTTF--GDLLRSLDPPSGFA  495 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~~--g~~~~~l~~~~~~~  495 (540)
                      |+.+.|||++..+         .++.....+|...|.|++|+|-+ .+||+||.|++|.+|+..  .+.+.++.+|+.  
T Consensus       249 d~~L~iwD~R~~~---------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d--  317 (422)
T KOG0264|consen  249 DGKLMIWDTRSNT---------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED--  317 (422)
T ss_pred             CCeEEEEEcCCCC---------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc--
Confidence            9999999998632         35677889999999999999954 578999999999999762  357889999999  


Q ss_pred             CceEEEEeeCCC-EEEE-ecCCeEEEEecC
Q psy1242         496 SPESVVMSREGV-IVVN-YERGHIAAFTMN  523 (540)
Q Consensus       496 ~v~~l~fspdg~-~l~s-~~dg~I~lw~~~  523 (540)
                      .|.+|.|||+.. +||+ |.|+.+.+||+.
T Consensus       318 ev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  318 EVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            789999999865 5555 679999999987

>KOG0647|consensus

Probab=99.70  E-value=2e-16  Score=149.90  Aligned_cols=151  Identities=21%  Similarity=0.310  Sum_probs=120.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.+++|||....++++|||||+||+|+++. |..+...              ...|.++|.+++|+.    ||..+++|+
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka--------------~~~~~~PvL~v~Wsd----dgskVf~g~   91 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA--------------QQSHDGPVLDVCWSD----DGSKVFSGG   91 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCCcccchh--------------hhccCCCeEEEEEcc----CCceEEeec
Confidence            678899997777889999999999999986 4444322              156899999999999    999999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG--LVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~--~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      .|+.+++||+...            .+..+..|..+|.++.|-+...  +|++||.|++|+.|+. ...++.++..++. 
T Consensus        92 ~Dk~~k~wDL~S~------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-  158 (347)
T KOG0647|consen   92 CDKQAKLWDLASG------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-  158 (347)
T ss_pred             cCCceEEEEccCC------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-
Confidence            9999999999873            2466778999999999987655  8999999999999976 6778888888774 


Q ss_pred             CCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         495 ASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                        ++++..-..--.+ +..++.|.+|++.
T Consensus       159 --vYa~Dv~~pm~vV-ata~r~i~vynL~  184 (347)
T KOG0647|consen  159 --VYAADVLYPMAVV-ATAERHIAVYNLE  184 (347)
T ss_pred             --eeehhccCceeEE-EecCCcEEEEEcC
Confidence              5555543332222 2347889999985

>KOG0267|consensus

Probab=99.70  E-value=4.2e-17  Score=169.69  Aligned_cols=194  Identities=20%  Similarity=0.237  Sum_probs=155.9

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      +|.+.+-.+.+..+-.+++.++.+++|++||+....                                     ..+.+.+
T Consensus        68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk-------------------------------------~vrtLtg  110 (825)
T KOG0267|consen   68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK-------------------------------------IVRTLTG  110 (825)
T ss_pred             ccCCcceeeecCcchhhhcccccCCceeeeehhhhh-------------------------------------hhhhhhc
Confidence            344445555566667779999999999999986422                                     1111211


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                      +...     +..+.|+|-+.+ .|+|+.|..+++||.+...+...+               .+|...|.+++|+|    +
T Consensus       111 h~~~-----~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~~---------------~s~~~vv~~l~lsP----~  165 (825)
T KOG0267|consen  111 HLLN-----ITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHTY---------------KSHTRVVDVLRLSP----D  165 (825)
T ss_pred             cccC-----cceeeeccceEE-eccccccccceehhhhccCceeee---------------cCCcceeEEEeecC----C
Confidence            2211     455668999997 699999999999999987788777               78999999999999    9


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      |+++++|+.|.+++|||...           ++....|.+|+..+..+.|+|..-++++|+.|+++++|+. +-+.+...
T Consensus       166 Gr~v~~g~ed~tvki~d~~a-----------gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~  234 (825)
T KOG0267|consen  166 GRWVASGGEDNTVKIWDLTA-----------GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG  234 (825)
T ss_pred             CceeeccCCcceeeeecccc-----------cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence            99999999999999999865           5677889999999999999999889999999999999987 46666666


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEecCCeEE
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNYERGHIA  518 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~~dg~I~  518 (540)
                      .....  .|.+++|+|+|..+++|..-.+.
T Consensus       235 ~~~~~--~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  235 KPETD--GVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             CCccC--CceeeeecCCceeeecCchhhhh
Confidence            65544  78999999999999998654443

>KOG0282|consensus

Probab=99.69  E-value=2.3e-16  Score=157.74  Aligned_cols=236  Identities=13%  Similarity=0.101  Sum_probs=172.9

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCC-CeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDP-ILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~-~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |..++....+...+.-+.|+|.|+++++||..++....... .   .....++.+.+|+ .++.+|..+. ....+.++.
T Consensus       257 H~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~---~~~~~cvkf~pd~~n~fl~G~sd~-ki~~wDiRs  331 (503)
T KOG0282|consen  257 HRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-L---DKVPTCVKFHPDNQNIFLVGGSDK-KIRQWDIRS  331 (503)
T ss_pred             chhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-c---CCCceeeecCCCCCcEEEEecCCC-cEEEEeccc
Confidence            55566666777888889999999999999999877544332 2   2333466778877 4444443222 233333332


Q ss_pred             -----CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         330 -----NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       330 -----~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                           .+++++. .+..+.|-++|++ +++.+.|++++||+.+.+-.++.+.              ..+.-..-||..+|
T Consensus       332 ~kvvqeYd~hLg-~i~~i~F~~~g~r-FissSDdks~riWe~~~~v~ik~i~--------------~~~~hsmP~~~~~P  395 (503)
T KOG0282|consen  332 GKVVQEYDRHLG-AILDITFVDEGRR-FISSSDDKSVRIWENRIPVPIKNIA--------------DPEMHTMPCLTLHP  395 (503)
T ss_pred             hHHHHHHHhhhh-heeeeEEccCCce-EeeeccCccEEEEEcCCCccchhhc--------------chhhccCcceecCC
Confidence                 2233332 2677788899997 7899999999999998776655441              23344567899999


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE--QPVTSVAISAELGLVVSGSQLGPVLVHTT-F  481 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~  481 (540)
                          .+.+++.-+.|..+.++.+...-        .......+.||.  +.-..|.|||||++|++|+.||.+.+|+- +
T Consensus       396 ----~~~~~~aQs~dN~i~ifs~~~~~--------r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  396 ----NGKWFAAQSMDNYIAIFSTVPPF--------RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             ----CCCeehhhccCceEEEEeccccc--------ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence                89999999999999999865421        123456778885  45667899999999999999999999976 7


Q ss_pred             CcEEEEecCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEe
Q psy1242         482 GDLLRSLDPPSGFASPESVVMSREGV-IVVN-YERGHIAAFT  521 (540)
Q Consensus       482 g~~~~~l~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~  521 (540)
                      .+++..++.|.+  ++..+.|+|... .||+ +-+|.|++|+
T Consensus       464 ~kl~~~lkah~~--~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  464 TKLVSKLKAHDQ--PCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hhhhhccccCCc--ceEEEEecCCCcceeEecccCceeEecC
Confidence            888999999977  789999999644 4444 5699999996

>KOG0308|consensus

Probab=99.68  E-value=2e-16  Score=162.99  Aligned_cols=179  Identities=17%  Similarity=0.277  Sum_probs=146.9

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCC--eEEEEEecccceeeeeeEEEeeccCcceEEEEe-ccCccCCCcEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA--RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR-SECNITADCFIA  414 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g--~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~-sp~~~~dg~~l~  414 (540)
                      +++.++.+.+|+. ++++|.|-+|++|+...+  -++.++               ..|.+.|.|++. .+    +...++
T Consensus        75 WVNDiiL~~~~~t-lIS~SsDtTVK~W~~~~~~~~c~sti---------------r~H~DYVkcla~~ak----~~~lva  134 (735)
T KOG0308|consen   75 WVNDIILCGNGKT-LISASSDTTVKVWNAHKDNTFCMSTI---------------RTHKDYVKCLAYIAK----NNELVA  134 (735)
T ss_pred             HHhhHHhhcCCCc-eEEecCCceEEEeecccCcchhHhhh---------------hcccchheeeeeccc----CceeEE
Confidence            4677777788884 789999999999999866  345555               789999999999 66    788999


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPS  492 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~  492 (540)
                      |||.|+.|.|||++.+..+.++... ......+. |+...|.+++.++.|..|++|+..+.+++|+. +++.+..+++|.
T Consensus       135 SgGLD~~IflWDin~~~~~l~~s~n-~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT  213 (735)
T KOG0308|consen  135 SGGLDRKIFLWDINTGTATLVASFN-NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT  213 (735)
T ss_pred             ecCCCccEEEEEccCcchhhhhhcc-ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc
Confidence            9999999999999976432222111 11223333 89999999999999999999999999999975 888889999999


Q ss_pred             CCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         493 GFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                      .  .|..+..++||..+++ ++||+|++||+. .+.+.++. |++.|.++
T Consensus       214 d--NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL  261 (735)
T KOG0308|consen  214 D--NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL  261 (735)
T ss_pred             c--ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence            9  6899999999998887 679999999998 67788876 88878765

>KOG0639|consensus

Probab=99.68  E-value=7.1e-16  Score=154.49  Aligned_cols=240  Identities=15%  Similarity=0.138  Sum_probs=169.1

Q ss_pred             cCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCC--CCccccCCCCeeeccCCCCCCccccccCCCcCc---ce
Q psy1242         261 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPP--GNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ---KL  335 (540)
Q Consensus       261 ~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~--~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~---~~  335 (540)
                      ..++--+.||+ -+-|++||+.......-..+-....-.+  ....+.+||..+.+|.. ......|.+..+-..   .+
T Consensus       428 S~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-astlsiWDLAapTprikael  505 (705)
T KOG0639|consen  428 SNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-ASTLSIWDLAAPTPRIKAEL  505 (705)
T ss_pred             cCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-cceeeeeeccCCCcchhhhc
Confidence            33343444444 5789999987653222222222211111  13446788866665543 344455555433211   11


Q ss_pred             ---eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         336 ---RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       336 ---~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                         .-.+.+++++||.+. ..++..||.|+|||+.+...+..+               +||.+.+.||.+++    ||..
T Consensus       506 tssapaCyALa~spDakv-cFsccsdGnI~vwDLhnq~~Vrqf---------------qGhtDGascIdis~----dGtk  565 (705)
T KOG0639|consen  506 TSSAPACYALAISPDAKV-CFSCCSDGNIAVWDLHNQTLVRQF---------------QGHTDGASCIDISK----DGTK  565 (705)
T ss_pred             CCcchhhhhhhcCCccce-eeeeccCCcEEEEEcccceeeecc---------------cCCCCCceeEEecC----CCce
Confidence               122667889999995 566667999999999988888888               99999999999999    9999


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecC
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDP  490 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~  490 (540)
                      |-||+.|.+||.||++.+.              .+..|  ...|.++..+|.+.+++.|-..+.+.|-..++.....+..
T Consensus       566 lWTGGlDntvRcWDlregr--------------qlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl  631 (705)
T KOG0639|consen  566 LWTGGLDNTVRCWDLREGR--------------QLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL  631 (705)
T ss_pred             eecCCCccceeehhhhhhh--------------hhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecc
Confidence            9999999999999998632              22233  5689999999999999999999998776556666667777


Q ss_pred             CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCCccee
Q psy1242         491 PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQK  538 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~~  538 (540)
                      |+.  -|-++.|++-|+++++ |.|+.+..|..- |..+-.......|.|
T Consensus       632 heS--cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVls  679 (705)
T KOG0639|consen  632 HES--CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS  679 (705)
T ss_pred             ccc--EEEEEEecccCceeeecCchhhhhhccCccccceeeccccCccee
Confidence            887  4699999999999997 778888888754 666655555555544

>KOG0301|consensus

Probab=99.68  E-value=4.3e-16  Score=161.64  Aligned_cols=152  Identities=24%  Similarity=0.302  Sum_probs=136.3

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      .+++|+.|.++.+|......++..+               .||++.|.|++...    ++. ++|||.|.|+++|...  
T Consensus        73 ~l~~g~~D~~i~v~~~~~~~P~~~L---------------kgH~snVC~ls~~~----~~~-~iSgSWD~TakvW~~~--  130 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQAEPLYTL---------------KGHKSNVCSLSIGE----DGT-LISGSWDSTAKVWRIG--  130 (745)
T ss_pred             ceEeecccceEEEEecCCCCchhhh---------------hccccceeeeecCC----cCc-eEecccccceEEecch--
Confidence            4689999999999999999998888               89999999999876    665 9999999999999753  


Q ss_pred             cccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEE
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVV  510 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~  510 (540)
                                 ++...+.+|+..|++++.-|++ .++|||.|.+|++|.. +++++++.+|.+  -|.++++-+++.++-
T Consensus       131 -----------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l~tf~gHtD--~VRgL~vl~~~~flS  195 (745)
T KOG0301|consen  131 -----------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLLKTFSGHTD--CVRGLAVLDDSHFLS  195 (745)
T ss_pred             -----------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cchhhhhccchh--heeeeEEecCCCeEe
Confidence                       4677799999999999999988 7899999999999976 889999999999  579999999999999


Q ss_pred             EecCCeEEEEecCCcEEEee-ecCCcceec
Q psy1242         511 NYERGHIAAFTMNGNRLRHE-SHNDNLQKT  539 (540)
Q Consensus       511 s~~dg~I~lw~~~g~~l~~~-~~~~~V~~v  539 (540)
                      ++.||.|++|+++|..|... .|..-|.++
T Consensus       196 csNDg~Ir~w~~~ge~l~~~~ghtn~vYsi  225 (745)
T KOG0301|consen  196 CSNDGSIRLWDLDGEVLLEMHGHTNFVYSI  225 (745)
T ss_pred             ecCCceEEEEeccCceeeeeeccceEEEEE
Confidence            99999999999998877766 488888776

>KOG4283|consensus

Probab=99.67  E-value=2.1e-15  Score=142.42  Aligned_cols=254  Identities=14%  Similarity=0.132  Sum_probs=171.7

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  334 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~  334 (540)
                      .+.+.+|.++.++.|+|.|.++++||.++.+....+.+.+.|.+.+.+-..... .++++|..+..+..--.-.+.+.+.
T Consensus       105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sH-cLiA~gtr~~~VrLCDi~SGs~sH~  183 (397)
T KOG4283|consen  105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSH-CLIAAGTRDVQVRLCDIASGSFSHT  183 (397)
T ss_pred             eeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcc-eEEEEecCCCcEEEEeccCCcceee
Confidence            345688999999999999999999999987766666666666655533222222 3444443222221111112233332


Q ss_pred             e---eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC-eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         335 L---RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA-RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       335 ~---~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g-~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                      +   +-.+.++.|+|..+++|++|+.||.||+||++.. .+...+..|.. .....+++-.+|.+.|..++|+.    +|
T Consensus       184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~ah~gkvngla~tS----d~  258 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNTAHYGKVNGLAWTS----DA  258 (397)
T ss_pred             eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccccccceeeeeeecc----cc
Confidence            2   3348899999999999999999999999999865 56666655543 22233344578999999999999    99


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEEec
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRSLD  489 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~l~  489 (540)
                      .++++++.|..+++|+...+.+....   .++....-..|- .+. +. +.+...++---.++.+.+.. ..|..++.+.
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~ntl~~---~g~~~~n~~~~~-~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~  332 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRNTLRE---FGPIIHNQTTSF-AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS  332 (397)
T ss_pred             hhhhhccCccceEEeecccCcccccc---cccccccccccc-eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeee
Confidence            99999999999999998876544311   111111111111 121 22 33445555555668887764 4999999999


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEec-CCeEEEEec
Q psy1242         490 PPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  522 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~  522 (540)
                      .|..  .+.+.++-|+=+...+++ |+.|..|.+
T Consensus       333 ~h~k--~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  333 THLK--RINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             cccc--eeeEEeecCchhhhhccccCCccccccc
Confidence            9965  678889988877777765 788999986

>KOG4283|consensus

Probab=99.67  E-value=5.5e-15  Score=139.66  Aligned_cols=214  Identities=15%  Similarity=0.178  Sum_probs=151.5

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  334 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~  334 (540)
                      +++..=+..+-+++|++.|+.+.+||+......                  ...+.++         ...-.++..-...
T Consensus        47 NsL~id~tegrymlSGgadgsi~v~Dl~n~t~~------------------e~s~li~---------k~~c~v~~~h~~~   99 (397)
T KOG4283|consen   47 NSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY------------------EASGLIA---------KHKCIVAKQHENG   99 (397)
T ss_pred             ceeeeccccceEEeecCCCccEEEEEeccccch------------------hhcccee---------heeeeccccCCcc
Confidence            334333446778999999999999998642210                  0111111         0011122222223


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      .+..+..+.|-|-..-++.+++.|.+++|||+.+-+....+                .-.+.|.+-++||.. ..-.+|+
T Consensus       100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F----------------~me~~VYshamSp~a-~sHcLiA  162 (397)
T KOG4283|consen  100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF----------------KMEGKVYSHAMSPMA-MSHCLIA  162 (397)
T ss_pred             ceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe----------------ecCceeehhhcChhh-hcceEEE
Confidence            33445666677766668999999999999999988777666                245667777777731 1235788


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEeC--CCcEEEEecCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL-VVSGSQLGPVLVHTT--FGDLLRSLDPP  491 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~-lasgs~Dg~v~iw~~--~g~~~~~l~~~  491 (540)
                      +|..|-.|++.|+..           +.+.+++.||.+.|.+|.|+|...+ |++|+.||.|++|+.  ...+.+++..|
T Consensus       163 ~gtr~~~VrLCDi~S-----------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h  231 (397)
T KOG4283|consen  163 AGTRDVQVRLCDIAS-----------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH  231 (397)
T ss_pred             EecCCCcEEEEeccC-----------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence            889999999999987           5678999999999999999998874 689999999999975  22455555444


Q ss_pred             CC------------CCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         492 SG------------FASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       492 ~~------------~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .+            ...|..+||+.+|.++++ |.|..+++|+..
T Consensus       232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            31            115789999999999997 789999999865

>KOG0293|consensus

Probab=99.67  E-value=9.6e-16  Score=150.48  Aligned_cols=157  Identities=15%  Similarity=0.181  Sum_probs=129.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +--+.||++|++ +|+|+.|.+..||++..-..++            ...++.+|..+|.-+.|||    |.++|++|+.
T Consensus       227 VWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k------------l~~tlvgh~~~V~yi~wSP----DdryLlaCg~  289 (519)
T KOG0293|consen  227 VWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK------------LKKTLVGHSQPVSYIMWSP----DDRYLLACGF  289 (519)
T ss_pred             EEEEEEcCCCee-EeeccCCceEEEEEEecCccee------------eeeeeecccCceEEEEECC----CCCeEEecCc
Confidence            455677999997 6999999999999876433321            2344589999999999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v  497 (540)
                      |..+++||..++           .+...+ .+|...+.+++|.|||..+++|+.|+++..|+.+|..+...++-... .|
T Consensus       290 ~e~~~lwDv~tg-----------d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~-~v  357 (519)
T KOG0293|consen  290 DEVLSLWDVDTG-----------DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDP-KV  357 (519)
T ss_pred             hHheeeccCCcc-----------hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccc-ee
Confidence            999999999873           333333 34568899999999999999999999999999999988777765542 58


Q ss_pred             eEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         498 ESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       498 ~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      .++++++||+++++ +.|..|.+|+...
T Consensus       358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~  385 (519)
T KOG0293|consen  358 HDLAITYDGKYVLLVTVDKKIRLYNREA  385 (519)
T ss_pred             EEEEEcCCCcEEEEEecccceeeechhh
Confidence            99999999998887 6789999998763

>KOG0299|consensus

Probab=99.67  E-value=3.1e-15  Score=148.92  Aligned_cols=215  Identities=18%  Similarity=0.196  Sum_probs=158.9

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  328 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~  328 (540)
                      .|..-+....+..++.++||++.|..|++|++.+...... .+|.                                   
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr-----------------------------------  244 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHR-----------------------------------  244 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccc-----------------------------------
Confidence            4555566677888899999999999999999977543322 1222                                   


Q ss_pred             CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         329 DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       329 ~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                            ..  +.+++|-..-. =+.+++.|.+|++|+++....+.++               .||++.|..|....    
T Consensus       245 ------~~--V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~vetl---------------yGHqd~v~~IdaL~----  296 (479)
T KOG0299|consen  245 ------GA--VSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYVETL---------------YGHQDGVLGIDALS----  296 (479)
T ss_pred             ------cc--eeeeeeecCcc-ceeeeecCCceEEEehhHhHHHHHH---------------hCCccceeeechhc----
Confidence                  11  23333332222 3578889999999999977777777               89999999998876    


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEE
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRS  487 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~  487 (540)
                      -++.+..|+.|+++++|++..            ....++.+|.+.+.|++|-.+ .++++||.+|.|.+|.. +.+++.+
T Consensus       297 reR~vtVGgrDrT~rlwKi~e------------esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~  363 (479)
T KOG0299|consen  297 RERCVTVGGRDRTVRLWKIPE------------ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFT  363 (479)
T ss_pred             ccceEEeccccceeEEEeccc------------cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeE
Confidence            566666677999999999843            334677899999999999865 57899999999999965 6666655


Q ss_pred             ecCCCC--C--------CCceEEEEeeCCCEEEEec-CCeEEEEecC-C----cEEEeeecCCcceecC
Q psy1242         488 LDPPSG--F--------ASPESVVMSREGVIVVNYE-RGHIAAFTMN-G----NRLRHESHNDNLQKTA  540 (540)
Q Consensus       488 l~~~~~--~--------~~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g----~~l~~~~~~~~V~~va  540 (540)
                      .+...+  .        ..|++++..|...++++|+ +|.|++|-++ |    +++..++..+.|++|+
T Consensus       364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~  432 (479)
T KOG0299|consen  364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLA  432 (479)
T ss_pred             eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEE
Confidence            443211  0        1468999999999999975 8999999887 4    3555666777777653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.66  E-value=5.2e-14  Score=140.69  Aligned_cols=249  Identities=10%  Similarity=0.021  Sum_probs=156.1

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCC-----CcCcceeeEE
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGD-----NFSQKLRVRH  339 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~-----~~~~~~~v~~  339 (540)
                      +++|++.|+++++||..+++.........    ....+.+++|+..+ +++.... ....+....     .+....  ..
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~----~~~~l~~~~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~--~~   75 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ----RPRGITLSKDGKLLYVCASDSD-TIQVIDLATGEVIGTLPSGP--DP   75 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCC----CCCceEECCCCCEEEEEECCCC-eEEEEECCCCcEEEeccCCC--Cc
Confidence            47889999999999997765444333221    12347788888644 4432221 111111111     011111  13


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccc--ee----------ee---------------eeEEEeec
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYG--VV----------TS---------------RIVQIIFG  392 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~--~v----------~~---------------~~~~~l~~  392 (540)
                      ..++++|+++.++++++.|+.+++||+.+++.+..+..+..  .+          .+               .....+. 
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-  154 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-  154 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence            46778999997767777799999999998877665542110  00          00               0111111 


Q ss_pred             cCcceEEEEeccCccCCCcEEEE-EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC-----C--CCEEEEEEcCCCC
Q psy1242         393 HYGVVTCLSRSECNITADCFIAS-GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-----E--QPVTSVAISAELG  464 (540)
Q Consensus       393 h~~~Vt~l~~sp~~~~dg~~l~s-gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-----~--~~V~~v~~spdg~  464 (540)
                      ......+++|+|    +|++|+. +..++.|++||+.+.           +.+..+..+     .  .....++|+|+++
T Consensus       155 ~~~~~~~~~~s~----dg~~l~~~~~~~~~v~i~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  219 (300)
T TIGR03866       155 VDQRPRFAEFTA----DGKELWVSSEIGGTVSVIDVATR-----------KVIKKITFEIPGVHPEAVQPVGIKLTKDGK  219 (300)
T ss_pred             cCCCccEEEECC----CCCEEEEEcCCCCEEEEEEcCcc-----------eeeeeeeecccccccccCCccceEECCCCC
Confidence            123456789999    8888754 456999999998763           223333211     1  1234688999999


Q ss_pred             EEEE-EeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         465 LVVS-GSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       465 ~las-gs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      .++. .+.++.+.+|+. +++.+..+.. ..  .+.+++|+|+|++|+++  .++.|.+||++ ++.+..+..++..+.|
T Consensus       220 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~  296 (300)
T TIGR03866       220 TAFVALGPANRVAVVDAKTYEVLDYLLV-GQ--RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGV  296 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCcEEEEEEe-CC--CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccccee
Confidence            7544 455677889876 6676665543 23  57899999999998874  47999999998 7777887766665655


Q ss_pred             C
Q psy1242         540 A  540 (540)
Q Consensus       540 a  540 (540)
                      |
T Consensus       297 ~  297 (300)
T TIGR03866       297 V  297 (300)
T ss_pred             E
Confidence            3

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0302|consensus

Probab=99.66  E-value=2.2e-15  Score=146.59  Aligned_cols=117  Identities=17%  Similarity=0.228  Sum_probs=98.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +-.++|||.-+.+||+||.||+|+|||++.+.....+.             .++|.+.|+.|+|+.    .-.+|++|+.
T Consensus       260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-------------~kAh~sDVNVISWnr----~~~lLasG~D  322 (440)
T KOG0302|consen  260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-------------TKAHNSDVNVISWNR----REPLLASGGD  322 (440)
T ss_pred             hhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-------------eeccCCceeeEEccC----CcceeeecCC
Confidence            55667888888899999999999999999884332220             168999999999998    6669999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~  480 (540)
                      ||+++|||++.-+.        ++|+..++-|..+|+||.|+|. ...|++++.|..|.||+.
T Consensus       323 dGt~~iwDLR~~~~--------~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKS--------GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             CceEEEEEhhhccC--------CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            99999999987442        5799999999999999999995 457888889999999964

>KOG0641|consensus

Probab=99.66  E-value=3e-14  Score=129.94  Aligned_cols=235  Identities=16%  Similarity=0.146  Sum_probs=160.8

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCC-c---------------ccCCCCcCCCCCCCCCccccCCCCeeeccCCC
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAA-S---------------IQSPSYAETPGSPPGNLPLTLDPILTHPTSNN  318 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~-~---------------~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~  318 (540)
                      +..+.+.+.+.+-+-+|...+.|+-....-. .               ....-|++++    -+..||++|.++++|+.+
T Consensus        35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsi----yc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSI----YCTAWSPCGELIATGSND  110 (350)
T ss_pred             eeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccE----EEEEecCccCeEEecCCC
Confidence            3344455555556777777777775422100 0               0111233222    257899999999999766


Q ss_pred             CCCcccccc-------CCCc---CcceeeEEEEEEEec-CCCEEEEEEe-cCCcEEEEEccCCeEEEEEecccceeeeee
Q psy1242         319 NAPVPKRHL-------GDNF---SQKLRVRHNCFVTTV-DSRFLLACGF-WDNSFRVFSTDNARIVQIIFGHYGVVTSRI  386 (540)
Q Consensus       319 ~~~~~~~~~-------~~~~---~~~~~v~~~~~~~sp-dg~~llasgs-~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~  386 (540)
                      ......+.-       +...   -+...|+-.|+-=.| .+..|+++|+ .|..|.+-|...|+..+.+           
T Consensus       111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~-----------  179 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL-----------  179 (350)
T ss_pred             ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee-----------
Confidence            544222111       1111   122233344443222 2334566654 5777788888899988888           


Q ss_pred             EEEeeccCcceEEEE-eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc--C-----CCCEEEEE
Q psy1242         387 VQIIFGHYGVVTCLS-RSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG--H-----EQPVTSVA  458 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~-~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h-----~~~V~~v~  458 (540)
                          .||.+-|.++- |      +|-.+++||.|.+|+.||++..           .++.++..  |     ...|.+++
T Consensus       180 ----sghtghilalysw------n~~m~~sgsqdktirfwdlrv~-----------~~v~~l~~~~~~~glessavaav~  238 (350)
T KOG0641|consen  180 ----SGHTGHILALYSW------NGAMFASGSQDKTIRFWDLRVN-----------SCVNTLDNDFHDGGLESSAVAAVA  238 (350)
T ss_pred             ----cCCcccEEEEEEe------cCcEEEccCCCceEEEEeeecc-----------ceeeeccCcccCCCcccceeEEEE
Confidence                78888888763 5      5789999999999999999863           34555421  2     25799999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEE
Q psy1242         459 ISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRL  527 (540)
Q Consensus       459 ~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l  527 (540)
                      +.|.|+++++|-.|..+.+++. -|+.++.+..|..  .|.++.|||...+++++ -|..|++-|+.|.+-
T Consensus       239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa--dir~vrfsp~a~yllt~syd~~ikltdlqgdla  307 (350)
T KOG0641|consen  239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA--DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA  307 (350)
T ss_pred             ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc--ceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence            9999999999999999999876 6778899988887  78999999999999985 589999999998653

>KOG0270|consensus

Probab=99.66  E-value=2.1e-15  Score=149.59  Aligned_cols=210  Identities=15%  Similarity=0.113  Sum_probs=150.5

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  342 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  342 (540)
                      .+.++|-|..|..|.+||+.-....                  -  |.+...+.........++ +.....++.--+..+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v------------------~--P~~~LGs~~sk~~~k~~k-~~~~~~gHTdavl~L  249 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAV------------------L--PCVTLGSKASKKKKKKGK-RSNSASGHTDAVLAL  249 (463)
T ss_pred             CcceEEEeccCceeEEecccccccc------------------c--cceeechhhhhhhhhhcc-cccccccchHHHHHH
Confidence            5668899999999999998531100                  0  111110000001111111 222222222225567


Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV  422 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV  422 (540)
                      +|+..-+.+||+||.|.+|++||+.+|++..++               ..|.+.|.+++|+|.   .+..|++||.|++|
T Consensus       250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~---------------~~~~k~Vq~l~wh~~---~p~~LLsGs~D~~V  311 (463)
T KOG0270|consen  250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI---------------THHGKKVQTLEWHPY---EPSVLLSGSYDGTV  311 (463)
T ss_pred             HhccccceeEEecCCCceEEEEEcCCCCcceeh---------------hhcCCceeEEEecCC---CceEEEeccccceE
Confidence            777777889999999999999999999999988               789999999999995   78999999999999


Q ss_pred             EEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC--CCcEEEEecCCCCCCCceE
Q psy1242         423 LLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT--FGDLLRSLDPPSGFASPES  499 (540)
Q Consensus       423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~--~g~~~~~l~~~~~~~~v~~  499 (540)
                      .+.|.+....           ....-.-.+.|-.++|.|... .+++++.||+|+-++.  .|+++.+++.|.+  +|.+
T Consensus       312 ~l~D~R~~~~-----------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISg  378 (463)
T KOG0270|consen  312 ALKDCRDPSN-----------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISG  378 (463)
T ss_pred             EeeeccCccc-----------cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC--Ccce
Confidence            9999885221           111122456788999998664 5677889999987654  6799999999999  8999


Q ss_pred             EEEeeCCCE-EEE-ecCCeEEEEecCC
Q psy1242         500 VVMSREGVI-VVN-YERGHIAAFTMNG  524 (540)
Q Consensus       500 l~fspdg~~-l~s-~~dg~I~lw~~~g  524 (540)
                      |+++..-.. +++ +.++.|++|++.+
T Consensus       379 l~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  379 LSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEecCCCCcceeeccccceEEEEeecC
Confidence            999987554 444 5689999999763

>KOG1539|consensus

Probab=99.66  E-value=9.6e-15  Score=154.47  Aligned_cols=166  Identities=17%  Similarity=0.232  Sum_probs=134.5

Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+.+.|+++++.|++ .+.|+..|+|-+|++++|.....+- .+           ..|.+.|+.++...    -++.++|
T Consensus       448 ~~~~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~-~~-----------~ah~~~V~gla~D~----~n~~~vs  510 (910)
T KOG1539|consen  448 DINATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFG-DS-----------PAHKGEVTGLAVDG----TNRLLVS  510 (910)
T ss_pred             CcceEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccc-cC-----------ccccCceeEEEecC----CCceEEE
Confidence            455788888999996 6889999999999999998877761 00           47999999999987    7889999


Q ss_pred             EeCCCcEEEEEcCCCcccc---cC---------------------------CCCCCcceEEeccCCCCEEEEEEcCCCCE
Q psy1242         416 GSADCTVLLWHWNARTQSI---VG---------------------------ETDTPTPRATLTGHEQPVTSVAISAELGL  465 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~---~~---------------------------~~~~~~~~~~l~~h~~~V~~v~~spdg~~  465 (540)
                      ++.+|.++.||........   ++                           .....+.++.+.||.+.|+.++|||||++
T Consensus       511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW  590 (910)
T KOG1539|consen  511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW  590 (910)
T ss_pred             ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence            9999999999987643100   00                           00123345677899999999999999999


Q ss_pred             EEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec--CCeEEEEe
Q psy1242         466 VVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFT  521 (540)
Q Consensus       466 lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~--dg~I~lw~  521 (540)
                      |++++.|++|++||. ++.++-.+....   +..++.|||+|.+||+..  ..-|++|.
T Consensus       591 lisasmD~tIr~wDlpt~~lID~~~vd~---~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  591 LISASMDSTIRTWDLPTGTLIDGLLVDS---PCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             EEEeecCCcEEEEeccCcceeeeEecCC---cceeeEECCCCCEEEEEEecCceEEEEE
Confidence            999999999999987 899888776554   568999999999999953  36799996

>KOG1036|consensus

Probab=99.66  E-value=9.4e-15  Score=139.14  Aligned_cols=243  Identities=12%  Similarity=0.118  Sum_probs=159.2

Q ss_pred             ccccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCe
Q psy1242         232 TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPIL  311 (540)
Q Consensus       232 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l  311 (540)
                      .++++-+..++|++.+..                 |+-+|.|+++++++...........|..++..    ..|..+...
T Consensus        10 npP~d~IS~v~f~~~~~~-----------------LLvssWDgslrlYdv~~~~l~~~~~~~~plL~----c~F~d~~~~   68 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSD-----------------LLVSSWDGSLRLYDVPANSLKLKFKHGAPLLD----CAFADESTI   68 (323)
T ss_pred             CCChhceeeEEEcCcCCc-----------------EEEEeccCcEEEEeccchhhhhheecCCceee----eeccCCceE
Confidence            345667777788755443                 55566999999999987766666677655542    334444444


Q ss_pred             eeccCCCCCCccccccC--C-CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEE
Q psy1242         312 THPTSNNNAPVPKRHLG--D-NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQ  388 (540)
Q Consensus       312 ~~~g~~~~~~~~~~~~~--~-~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~  388 (540)
                      ..++.+.  ......+.  . ..-....-.+.|+..++-.. .+++|+||++|++||.+.......+             
T Consensus        69 ~~G~~dg--~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~-------------  132 (323)
T KOG1036|consen   69 VTGGLDG--QVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTF-------------  132 (323)
T ss_pred             EEeccCc--eEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccc-------------
Confidence            4433211  11111111  1 11111222367777776655 3789999999999999864444443             


Q ss_pred             EeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEE-eccCCCCEEEEEEcCCCCEEE
Q psy1242         389 IIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT-LTGHEQPVTSVAISAELGLVV  467 (540)
Q Consensus       389 ~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~spdg~~la  467 (540)
                         .....|.|+..      .|+.|+.|+.|..|.+||++...          .+.+. -..-+-.+.||++-|++.-.+
T Consensus       133 ---d~~kkVy~~~v------~g~~LvVg~~~r~v~iyDLRn~~----------~~~q~reS~lkyqtR~v~~~pn~eGy~  193 (323)
T KOG1036|consen  133 ---DQGKKVYCMDV------SGNRLVVGTSDRKVLIYDLRNLD----------EPFQRRESSLKYQTRCVALVPNGEGYV  193 (323)
T ss_pred             ---ccCceEEEEec------cCCEEEEeecCceEEEEEccccc----------chhhhccccceeEEEEEEEecCCCceE
Confidence               23347888877      46789999999999999998732          11111 123345789999999888889


Q ss_pred             EEeCCCcEEEE--eCC---CcEEEEecCCCC-------CCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEee
Q psy1242         468 SGSQLGPVLVH--TTF---GDLLRSLDPPSG-------FASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       468 sgs~Dg~v~iw--~~~---g~~~~~l~~~~~-------~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~  530 (540)
                      .+|-||.|-+-  +.+   .+.-..+++|..       ..+|++|+|+|-.+.+++ |+||.|.+||+. .|.|..+
T Consensus       194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~  270 (323)
T KOG1036|consen  194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL  270 (323)
T ss_pred             EEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc
Confidence            99999999883  222   122344555532       127899999999888888 679999999987 4555444

>KOG0294|consensus

Probab=99.66  E-value=3.3e-15  Score=142.43  Aligned_cols=151  Identities=19%  Similarity=0.254  Sum_probs=125.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..|+|+  +|.+ +|+|+.|.+|+|||+++.+.+..+               -.|.+.|+++.|.++.  ....|++|+.
T Consensus        46 itavAV--s~~~-~aSGssDetI~IYDm~k~~qlg~l---------------l~HagsitaL~F~~~~--S~shLlS~sd  105 (362)
T KOG0294|consen   46 ITALAV--SGPY-VASGSSDETIHIYDMRKRKQLGIL---------------LSHAGSITALKFYPPL--SKSHLLSGSD  105 (362)
T ss_pred             eeEEEe--ccee-EeccCCCCcEEEEeccchhhhcce---------------eccccceEEEEecCCc--chhheeeecC
Confidence            455543  6886 799999999999999988888777               7899999999999832  2238999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      ||.|.+|+...           ..++..+++|.+.|+.++++|.+++.++.+.|+.++.|+. +|+.-..+.....   .
T Consensus       106 DG~i~iw~~~~-----------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~---a  171 (362)
T KOG0294|consen  106 DGHIIIWRVGS-----------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK---A  171 (362)
T ss_pred             CCcEEEEEcCC-----------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc---c
Confidence            99999999765           4688999999999999999999999999999999999965 7776555544332   3


Q ss_pred             eEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         498 ESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       498 ~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      ..+.|+|.|.+++.+....|-+|.++
T Consensus       172 t~v~w~~~Gd~F~v~~~~~i~i~q~d  197 (362)
T KOG0294|consen  172 TLVSWSPQGDHFVVSGRNKIDIYQLD  197 (362)
T ss_pred             eeeEEcCCCCEEEEEeccEEEEEecc
Confidence            56999999998888777888888765

>KOG2445|consensus

Probab=99.65  E-value=9.6e-15  Score=138.91  Aligned_cols=261  Identities=13%  Similarity=0.126  Sum_probs=159.3

Q ss_pred             ccccccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCc-----ccCCCCcCCCCC-----C
Q psy1242         230 FSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-----IQSPSYAETPGS-----P  299 (540)
Q Consensus       230 f~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~-----~~~~~~~~~v~~-----~  299 (540)
                      |...+++.+..+.|...+.+                 +||||.|.+|++||...+..     .....|.+++--     +
T Consensus         8 i~s~h~DlihdVs~D~~GRR-----------------mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP   70 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRR-----------------MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP   70 (361)
T ss_pred             cccCCcceeeeeeecccCce-----------------eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc
Confidence            44567788888888777776                 99999999999999643331     122345544410     0


Q ss_pred             C---CCccccCCCCeeeccCCCCCC---ccccccC-CCcCcceeeEEEEEEEec--CCCEEEEEEecCCcEEEEEccCCe
Q psy1242         300 P---GNLPLTLDPILTHPTSNNNAP---VPKRHLG-DNFSQKLRVRHNCFVTTV--DSRFLLACGFWDNSFRVFSTDNAR  370 (540)
Q Consensus       300 ~---~~~~~s~D~~l~~~g~~~~~~---~~~~~~~-~~~~~~~~v~~~~~~~sp--dg~~llasgs~Dgsv~iwd~~~g~  370 (540)
                      .   ...+++.|+++.+.--...+.   ..++... ...+....  +..+.|.|  -|- .+|+++.||.+|||+.-..-
T Consensus        71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrss--V~DV~FaP~hlGL-klA~~~aDG~lRIYEA~dp~  147 (361)
T KOG2445|consen   71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSS--VTDVKFAPKHLGL-KLAAASADGILRIYEAPDPM  147 (361)
T ss_pred             cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcc--eeEEEecchhcce-EEEEeccCcEEEEEecCCcc
Confidence            0   012334444333221000000   0111111 11222223  44445555  455 47999999999999875432


Q ss_pred             EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC-----CcEEEEEcCCCcccccCCCCCCcceE
Q psy1242         371 IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD-----CTVLLWHWNARTQSIVGETDTPTPRA  445 (540)
Q Consensus       371 ~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~~~~  445 (540)
                      -+....-.. .+ ...+.+...+.....||.|+|.. ....+|+.|+.+     +.+.||.......+       ...+.
T Consensus       148 nLs~W~Lq~-Ei-~~~~~pp~~~~~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-------w~kva  217 (361)
T KOG2445|consen  148 NLSQWTLQH-EI-QNVIDPPGKNKQPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-------WLKVA  217 (361)
T ss_pred             ccccchhhh-hh-hhccCCcccccCcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcce-------eeeeh
Confidence            222110000 00 00011113567788999999821 134567777765     48999987654322       24567


Q ss_pred             EeccCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCCC---------------------cEEEEecCCCCCCCceEE
Q psy1242         446 TLTGHEQPVTSVAISAEL----GLVVSGSQLGPVLVHTTFG---------------------DLLRSLDPPSGFASPESV  500 (540)
Q Consensus       446 ~l~~h~~~V~~v~~spdg----~~lasgs~Dg~v~iw~~~g---------------------~~~~~l~~~~~~~~v~~l  500 (540)
                      .+.+|+++|+.|+|.|.-    .+||+++.|| |+||....                     +.+..+..|.+  .|+.+
T Consensus       218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~--~VWrv  294 (361)
T KOG2445|consen  218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG--EVWRV  294 (361)
T ss_pred             hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC--ceEEE
Confidence            788999999999999963    5899999999 99884321                     23445667887  89999


Q ss_pred             EEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         501 VMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       501 ~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .|+-.|.+|++ |+||+|++|-.+
T Consensus       295 ~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  295 RWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEeeeeeEEeecCCCceeeehhhh
Confidence            99999999998 789999999754

>KOG0289|consensus

Probab=99.65  E-value=2.5e-14  Score=141.51  Aligned_cols=222  Identities=10%  Similarity=0.061  Sum_probs=157.3

Q ss_pred             EEEEEccCcceEEEEcCCCCC-cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC----cCcceeeEE
Q psy1242         265 VVTVTANHQFAINRWNPDYAA-SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN----FSQKLRVRH  339 (540)
Q Consensus       265 ~~lvs~s~D~tv~~W~~~~~~-~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~----~~~~~~v~~  339 (540)
                      ..+.|++.|.++-+.|..... .....+|...+.    .+.++++-..+.+++.+. ....+.....    ....+...+
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~----~v~~~~~~~~v~~aSad~-~i~vws~~~~s~~~~~~~h~~~V  306 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKIT----SVKFHKDLDTVITASADE-IIRVWSVPLSSEPTSSRPHEEPV  306 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEE----EEEeccchhheeecCCcc-eEEeeccccccCccccccccccc
Confidence            447899999999999976654 334445653332    123344433333322111 1111111110    001112236


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      +.+..+|.|.| |.+++.|++..+.|.++|..+.....             .+..-.+++.+|+|    ||..+.+|..|
T Consensus       307 ~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~-------------~~s~v~~ts~~fHp----DgLifgtgt~d  368 (506)
T KOG0289|consen  307 TGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSD-------------ETSDVEYTSAAFHP----DGLIFGTGTPD  368 (506)
T ss_pred             eeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEee-------------ccccceeEEeeEcC----CceEEeccCCC
Confidence            77788999997 68899999999999999998876611             11234589999999    99999999999


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCce
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~  498 (540)
                      +.|+|||+...           ..+..|.+|+++|..|+|+.+|-++|+++.|+.|++||. .-+...++...... .+.
T Consensus       369 ~~vkiwdlks~-----------~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~  436 (506)
T KOG0289|consen  369 GVVKIWDLKSQ-----------TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVN  436 (506)
T ss_pred             ceEEEEEcCCc-----------cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cce
Confidence            99999998763           356788999999999999999999999999999999976 55566677665543 689


Q ss_pred             EEEEeeCCCEEEEe-cCCeEEEEe
Q psy1242         499 SVVMSREGVIVVNY-ERGHIAAFT  521 (540)
Q Consensus       499 ~l~fspdg~~l~s~-~dg~I~lw~  521 (540)
                      +++|.+.|.+|+.+ .+-+|+++.
T Consensus       437 s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  437 SLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             eEEEcCCCCeEEeecceeEEEEEe
Confidence            99999999999985 455666665

>KOG1446|consensus

Probab=99.64  E-value=3.1e-14  Score=136.20  Aligned_cols=176  Identities=18%  Similarity=0.128  Sum_probs=133.0

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee-----------------------------eeeEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT-----------------------------SRIVQ  388 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~-----------------------------~~~~~  388 (540)
                      .+.++.++++|.. +++++.|.++++||..+|+.++++..+.-.+.                             .+.++
T Consensus        16 ~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR   94 (311)
T KOG1446|consen   16 KINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR   94 (311)
T ss_pred             ceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence            3688899999997 56678899999999999998888754432221                             06788


Q ss_pred             EeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242         389 IIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       389 ~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~las  468 (540)
                      .+.||...|++|+.+|    -+..++|+|.|++|++||++..           +|...+.--  .-..+++.|+|-++|+
T Consensus        95 YF~GH~~~V~sL~~sP----~~d~FlS~S~D~tvrLWDlR~~-----------~cqg~l~~~--~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   95 YFPGHKKRVNSLSVSP----KDDTFLSSSLDKTVRLWDLRVK-----------KCQGLLNLS--GRPIAAFDPEGLIFAL  157 (311)
T ss_pred             EcCCCCceEEEEEecC----CCCeEEecccCCeEEeeEecCC-----------CCceEEecC--CCcceeECCCCcEEEE
Confidence            8999999999999999    7899999999999999999863           344444322  2335799999999999


Q ss_pred             EeCCCcEEEEeC---CCcEEEEecCC-CCCCCceEEEEeeCCCEEEEe-cCCeEEEEe-cCCcEEEeee
Q psy1242         469 GSQLGPVLVHTT---FGDLLRSLDPP-SGFASPESVVMSREGVIVVNY-ERGHIAAFT-MNGNRLRHES  531 (540)
Q Consensus       469 gs~Dg~v~iw~~---~g~~~~~l~~~-~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~-~~g~~l~~~~  531 (540)
                      +...+.|++++.   ...+-.++... ........+.|||||++|+.+ ..+.+++.| .+|..+.+++
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence            998889999865   34455555443 222256899999999988775 456677777 4577666664

>KOG0303|consensus

Probab=99.64  E-value=2.8e-15  Score=146.56  Aligned_cols=164  Identities=18%  Similarity=0.173  Sum_probs=136.3

Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      +..+..++|+|-+...||+||.|.+|+||++-.+.+...+.        ..+..|.||+..|--|+|+|.   -.+.|+|
T Consensus        81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------epvv~L~gH~rrVg~V~wHPt---A~NVLls  149 (472)
T KOG0303|consen   81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------EPVVELYGHQRRVGLVQWHPT---APNVLLS  149 (472)
T ss_pred             cccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------cceEEEeecceeEEEEeeccc---chhhHhh
Confidence            33478889999988899999999999999997665443331        234456899999999999995   5688999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      ++.|.+|.+|++.+           ++.+.++. |.+.|.+++|+.+|.++++.|.|..|+||+. +|+.+..-.+|.+.
T Consensus       150 ag~Dn~v~iWnv~t-----------geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGT-----------GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             ccCCceEEEEeccC-----------CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence            99999999999887           34555666 9999999999999999999999999999976 89998888888874


Q ss_pred             CCceEEEEeeCCCEEEEe----cCCeEEEEecC
Q psy1242         495 ASPESVVMSREGVIVVNY----ERGHIAAFTMN  523 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~----~dg~I~lw~~~  523 (540)
                       ....+.|-.+|.++.+|    ++.++-+|+++
T Consensus       218 -k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  218 -KPARAIFLASGKIFTTGFSRMSERQIALWDPN  249 (472)
T ss_pred             -CcceeEEeccCceeeeccccccccceeccCcc
Confidence             56778898999966665    47889999875

>KOG2055|consensus

Probab=99.63  E-value=4.1e-14  Score=141.00  Aligned_cols=232  Identities=15%  Similarity=0.162  Sum_probs=154.2

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc--eeeEEEEEE
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK--LRVRHNCFV  343 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~--~~v~~~~~~  343 (540)
                      +++++|.-.....||+.+.+........+.-...-..|.+|+|+.+++.................+-+.  +...+..+.
T Consensus       272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~  351 (514)
T KOG2055|consen  272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFT  351 (514)
T ss_pred             EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEE
Confidence            677777777788888766443222111110011223577888886555432222221111111112122  233477888


Q ss_pred             EecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcce--EEEEeccCccCCCcEEEEEeCCCc
Q psy1242         344 TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVV--TCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       344 ~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~V--t~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      |+.||+.|+++| .+|.|.+||++...++..+.                .++.|  ++++.++    +|.+||+||..|.
T Consensus       352 fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~----------------D~G~v~gts~~~S~----ng~ylA~GS~~Gi  410 (514)
T KOG2055|consen  352 FSSDSKELLASG-GTGEVYVWNLRQNSCLHRFV----------------DDGSVHGTSLCISL----NGSYLATGSDSGI  410 (514)
T ss_pred             EecCCcEEEEEc-CCceEEEEecCCcceEEEEe----------------ecCccceeeeeecC----CCceEEeccCcce
Confidence            899999876666 48999999999998888772                23333  4566677    8999999999999


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEE-EeCCCcEEEEecCCCCCC-Cc
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ--LGPVLV-HTTFGDLLRSLDPPSGFA-SP  497 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~--Dg~v~i-w~~~g~~~~~l~~~~~~~-~v  497 (540)
                      |.|||.+.-..     ...++|+.++..-...|+++.|++|+++||.+|.  +..+++ +..+......+......+ .|
T Consensus       411 VNIYd~~s~~~-----s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  411 VNIYDGNSCFA-----STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             EEEeccchhhc-----cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccce
Confidence            99999654211     1236788888888889999999999999988875  556765 666666555555443311 58


Q ss_pred             eEEEEeeCCCEEEEec-CCeEEEEecC
Q psy1242         498 ESVVMSREGVIVVNYE-RGHIAAFTMN  523 (540)
Q Consensus       498 ~~l~fspdg~~l~s~~-dg~I~lw~~~  523 (540)
                      +|++|||.|.++|.|. +|++.+|-+.
T Consensus       486 tc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  486 TCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEEecCCCceEEeecCCCceeeEeec
Confidence            9999999999999974 6999999764

>KOG0269|consensus

Probab=99.63  E-value=9.1e-16  Score=160.96  Aligned_cols=174  Identities=11%  Similarity=0.075  Sum_probs=139.5

Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC---CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN---ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~---g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      .-.++..+.|..-...+||+++..|.|.+||+..   .+.+..+               ..|...|+++.|++.   ...
T Consensus        86 ~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f---------------~EH~Rs~~~ldfh~t---ep~  147 (839)
T KOG0269|consen   86 KFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF---------------NEHERSANKLDFHST---EPN  147 (839)
T ss_pred             eeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh---------------hhhccceeeeeeccC---Ccc
Confidence            3445666777655555899999999999999986   3444455               789999999999985   778


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC--CCcEEEEe
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT--FGDLLRSL  488 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~--~g~~~~~l  488 (540)
                      +|+|||.||+|++||++..           +...++.+....|..|.|+|. +..++++...|.+++||.  ..++...+
T Consensus       148 iliSGSQDg~vK~~DlR~~-----------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~  216 (839)
T KOG0269|consen  148 ILISGSQDGTVKCWDLRSK-----------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL  216 (839)
T ss_pred             EEEecCCCceEEEEeeecc-----------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh
Confidence            9999999999999999873           345677778889999999994 668999999999999986  45677888


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCC---cEEEeeecCCcceec
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG---NRLRHESHNDNLQKT  539 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g---~~l~~~~~~~~V~~v  539 (540)
                      ..|.+  +|.++.|+|++.+||+| .|++|+||+..+   +.+.+...-.+|.+|
T Consensus       217 ~AH~G--pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rV  269 (839)
T KOG0269|consen  217 TAHNG--PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRV  269 (839)
T ss_pred             hcccC--ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeee
Confidence            88998  89999999999999995 589999999874   333444444555544

>KOG0278|consensus

Probab=99.63  E-value=5.9e-16  Score=143.11  Aligned_cols=196  Identities=16%  Similarity=0.192  Sum_probs=155.5

Q ss_pred             ccCCCCeeeccCCCCCCcccc-----ccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccc
Q psy1242         305 LTLDPILTHPTSNNNAPVPKR-----HLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHY  379 (540)
Q Consensus       305 ~s~D~~l~~~g~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~  379 (540)
                      +.+||..+.+.+.+..+..+.     -++....++..|+..++  +.+.. ..|+++.|-+-+|||.-+|..+..+    
T Consensus        25 itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l--~~na~-~aasaaadftakvw~a~tgdelhsf----   97 (334)
T KOG0278|consen   25 ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATL--NKNAT-RAASAAADFTAKVWDAVTGDELHSF----   97 (334)
T ss_pred             CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeec--Cchhh-hhhhhcccchhhhhhhhhhhhhhhh----
Confidence            457786666554444432221     12223345556666665  55555 3688999999999999999998887    


Q ss_pred             ceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEE
Q psy1242         380 GVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAI  459 (540)
Q Consensus       380 ~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~  459 (540)
                                  .|...|..++|+.    |.++|+||+.+..+||+|++...          .+...+.+|.+.|..+-|
T Consensus        98 ------------~hkhivk~~af~~----ds~~lltgg~ekllrvfdln~p~----------App~E~~ghtg~Ir~v~w  151 (334)
T KOG0278|consen   98 ------------EHKHIVKAVAFSQ----DSNYLLTGGQEKLLRVFDLNRPK----------APPKEISGHTGGIRTVLW  151 (334)
T ss_pred             ------------hhhheeeeEEecc----cchhhhccchHHHhhhhhccCCC----------CCchhhcCCCCcceeEEE
Confidence                        6888999999999    99999999999999999987632          456788999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeeecCCcc
Q psy1242         460 SAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHESHNDNL  536 (540)
Q Consensus       460 spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V  536 (540)
                      ....+.|+|++.|++||+|+. +|..++++....   +|+++.++++|++|..+..+.|.+||++ =.+|+++...-.|
T Consensus       152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s---~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV  227 (334)
T KOG0278|consen  152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS---PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNV  227 (334)
T ss_pred             eccCceEEeeccCCceEEEEeccCcEEEEEecCC---CCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccc
Confidence            999999999999999999976 999999998655   6899999999999999989999999988 4566665544333

>KOG2919|consensus

Probab=99.61  E-value=1.7e-14  Score=137.91  Aligned_cols=227  Identities=17%  Similarity=0.158  Sum_probs=169.0

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCcccCC-C--CcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC--------
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQSP-S--YAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--------  328 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~--~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~--------  328 (540)
                      .++++.+.+..+.+.-|++||..+++...+. .  |.+.+. .+.++.|++||..+.+|.  +.......+.        
T Consensus       119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~t-aAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~v  195 (406)
T KOG2919|consen  119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYT-AAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPV  195 (406)
T ss_pred             CCCccceeeeccccCceeeeeccccccccchhhhhhHHhhh-hheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcc
Confidence            4467888899999999999999988754332 2  333332 334789999998877763  2221111110        


Q ss_pred             -CCcC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         329 -DNFS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       329 -~~~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                       ..+.   .....-..|++++|-...++|+|+...++-|+.-..++++..+               .+|.+.||.+.|++
T Consensus       196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---------------ggh~gGvThL~~~e  260 (406)
T KOG2919|consen  196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---------------GGHGGGVTHLQWCE  260 (406)
T ss_pred             hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------------cccCCCeeeEEecc
Confidence             0011   1112236889999988778999999999999998888888888               89999999999999


Q ss_pred             CccCCCcEEEEEeC-CCcEEEEEcCCCcccccCCCCCCcceEEeccCCC-CEE--EEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         405 CNITADCFIASGSA-DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ-PVT--SVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       405 ~~~~dg~~l~sgs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~--~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                          +|+.|.+|++ |..|..||++..          ..++..+.+|.. .-.  -..+.|++++|++|+.||.|++|+.
T Consensus       261 ----dGn~lfsGaRk~dkIl~WDiR~~----------~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl  326 (406)
T KOG2919|consen  261 ----DGNKLFSGARKDDKILCWDIRYS----------RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL  326 (406)
T ss_pred             ----CcCeecccccCCCeEEEEeehhc----------cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence                9999999985 789999999863          356777777755 222  3456688999999999999999976


Q ss_pred             -C-CcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEE
Q psy1242         481 -F-GDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAF  520 (540)
Q Consensus       481 -~-g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw  520 (540)
                       + |..+..+..+..  .++.++++|--.++++++...+.-+
T Consensus       327 k~~gn~~sv~~~~sd--~vNgvslnP~mpilatssGqr~f~~  366 (406)
T KOG2919|consen  327 KDLGNEVSVTGNYSD--TVNGVSLNPIMPILATSSGQRIFKY  366 (406)
T ss_pred             CCCCCcccccccccc--cccceecCcccceeeeccCceeecC
Confidence             3 666777777777  5799999999889988766555544

>KOG2048|consensus

Probab=99.61  E-value=3.7e-14  Score=147.18  Aligned_cols=171  Identities=15%  Similarity=0.139  Sum_probs=129.6

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      -.++|++.++ | .+.+.+|+|.-||+.+++....+               ..-.+.|.+++.+|    .+..++.|+.|
T Consensus        73 E~L~W~e~~R-L-FS~g~sg~i~EwDl~~lk~~~~~---------------d~~gg~IWsiai~p----~~~~l~Igcdd  131 (691)
T KOG2048|consen   73 ESLAWAEGGR-L-FSSGLSGSITEWDLHTLKQKYNI---------------DSNGGAIWSIAINP----ENTILAIGCDD  131 (691)
T ss_pred             eeEEEccCCe-E-EeecCCceEEEEecccCceeEEe---------------cCCCcceeEEEeCC----ccceEEeecCC
Confidence            3445566666 4 56667999999999999988877               67778999999999    88999999999


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEE-----ecCCC-
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRS-----LDPPS-  492 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~-----l~~~~-  492 (540)
                      |.+...+.....         .+....+...++.|.+++|+|++..+++||.||.|++|+. .++.+..     ....+ 
T Consensus       132 Gvl~~~s~~p~~---------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~  202 (691)
T KOG2048|consen  132 GVLYDFSIGPDK---------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR  202 (691)
T ss_pred             ceEEEEecCCce---------EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence            966666654321         2333445556789999999999999999999999999987 5655541     11112 


Q ss_pred             CCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         493 GFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      ...-|+++.|-.++.++..-+.|+|.+||.. |.++.+.. |+..|.|||
T Consensus       203 ~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La  252 (691)
T KOG2048|consen  203 EPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA  252 (691)
T ss_pred             CceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence            1124788888877765544457999999976 88888776 999998875

>KOG0646|consensus

Probab=99.60  E-value=2.4e-14  Score=142.91  Aligned_cols=206  Identities=16%  Similarity=0.163  Sum_probs=150.3

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN  330 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~  330 (540)
                      |--++|...+..++..++|+|.|+.|++|...+                    .+++|..        ..+.....   .
T Consensus       122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~--------------------lv~a~~~--------~~~~p~~~---f  170 (476)
T KOG0646|consen  122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD--------------------LVSADND--------HSVKPLHI---F  170 (476)
T ss_pred             hccceeEEEEeCCCcEEEecCCCccEEEEEEEe--------------------ecccccC--------CCccceee---e
Confidence            444567777778888899999999999999754                    1122111        01112222   2


Q ss_pred             cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                      -++.+.|+...+...+...+ ++++|.|.++++||+..|.++.++                .-...+.+++.+|    .+
T Consensus       171 ~~HtlsITDl~ig~Gg~~~r-l~TaS~D~t~k~wdlS~g~LLlti----------------~fp~si~av~lDp----ae  229 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGGTNAR-LYTASEDRTIKLWDLSLGVLLLTI----------------TFPSSIKAVALDP----AE  229 (476)
T ss_pred             ccCcceeEEEEecCCCccce-EEEecCCceEEEEEeccceeeEEE----------------ecCCcceeEEEcc----cc
Confidence            23445554444444433444 689999999999999999988877                3457899999999    88


Q ss_pred             cEEEEEeCCCcEEEEEcCCCccccc-----CCCCCCcceEEeccCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEeC-CC
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIV-----GETDTPTPRATLTGHEQ--PVTSVAISAELGLVVSGSQLGPVLVHTT-FG  482 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~-----~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g  482 (540)
                      +.+..|+.+|.|.+-++....+...     +-.+.+..+..+.||.+  .|+|++++.||.+|+||+.||.|+||+. +.
T Consensus       230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            9999999999999988766442211     11234556788899998  9999999999999999999999999987 77


Q ss_pred             cEEEEecCCCCCCCceEEEEeeCCCEEE
Q psy1242         483 DLLRSLDPPSGFASPESVVMSREGVIVV  510 (540)
Q Consensus       483 ~~~~~l~~~~~~~~v~~l~fspdg~~l~  510 (540)
                      ++++++....+  +|+.+.+.|-.+-..
T Consensus       310 Q~iRtl~~~kg--pVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  310 QCIRTLQTSKG--PVTNLQINPLERGII  335 (476)
T ss_pred             HHHHHHhhhcc--ccceeEeecccccee
Confidence            88888876566  788888866544333

>KOG4378|consensus

Probab=99.56  E-value=1.7e-13  Score=137.44  Aligned_cols=244  Identities=13%  Similarity=0.094  Sum_probs=165.0

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccc----ccCCCcCcceeeEE
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR----HLGDNFSQKLRVRH  339 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~----~~~~~~~~~~~v~~  339 (540)
                      .+++++.+.|..+++|--.......-..-+ .-+....++.+..-.....+|.. ...+..|    ++..-+.....-.+
T Consensus        47 ~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~-~~~Vkiwdl~~kl~hr~lkdh~stv  124 (673)
T KOG4378|consen   47 FLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQ-SGCVKIWDLRAKLIHRFLKDHQSTV  124 (673)
T ss_pred             eEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCc-CceeeehhhHHHHHhhhccCCccee
Confidence            367888899999999986543211111000 01222223333333334433322 2222222    22222222333458


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      .|+.++....+ ||+++..|.|.|..+.++.....+.              .+....|.-+.++|.   ...+|.+++.+
T Consensus       125 t~v~YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~f~--------------~~sgqsvRll~ys~s---kr~lL~~asd~  186 (673)
T KOG4378|consen  125 TYVDYNNTDEY-IASVSDGGDIIIHGTKTKQKTTTFT--------------IDSGQSVRLLRYSPS---KRFLLSIASDK  186 (673)
T ss_pred             EEEEecCCcce-eEEeccCCcEEEEecccCcccccee--------------cCCCCeEEEeecccc---cceeeEeeccC
Confidence            89999988886 7999999999999999887776661              122345668999993   45567889999


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC-CcEEEEecCCCCCCCc
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTTF-GDLLRSLDPPSGFASP  497 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~~-g~~~~~l~~~~~~~~v  497 (540)
                      |.|.+||++...          ........|..+...|||+|.. .+|++.+.|+.|.+++.. .....++.. ..  +.
T Consensus       187 G~VtlwDv~g~s----------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~--Pl  253 (673)
T KOG4378|consen  187 GAVTLWDVQGMS----------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SH--PL  253 (673)
T ss_pred             CeEEEEeccCCC----------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cC--Cc
Confidence            999999987633          1234457899999999999976 478999999999998763 333444433 22  67


Q ss_pred             eEEEEeeCCCEEEEe-cCCeEEEEecCCc--EEEeee-cCCcceecC
Q psy1242         498 ESVVMSREGVIVVNY-ERGHIAAFTMNGN--RLRHES-HNDNLQKTA  540 (540)
Q Consensus       498 ~~l~fspdg~~l~s~-~dg~I~lw~~~g~--~l~~~~-~~~~V~~va  540 (540)
                      ..++|+++|.+|+.| +.|.|..||+.+.  .++... |+..|+|||
T Consensus       254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  254 STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA  300 (673)
T ss_pred             ceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence            899999999999997 5799999999854  566665 888899885

>KOG0639|consensus

Probab=99.55  E-value=9.6e-14  Score=139.37  Aligned_cols=220  Identities=15%  Similarity=0.157  Sum_probs=162.5

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCC--CccccCCCCeeeccCCCCCC--------ccccccC
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPG--NLPLTLDPILTHPTSNNNAP--------VPKRHLG  328 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~--~~~~s~D~~l~~~g~~~~~~--------~~~~~~~  328 (540)
                      .+.+++..|++++.-.++-+||.............   -+..+  .+..++|..++.++-.+.+.        ...|++.
T Consensus       472 kL~pdgrtLivGGeastlsiWDLAapTprikaelt---ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq  548 (705)
T KOG0639|consen  472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT---SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ  548 (705)
T ss_pred             EecCCCceEEeccccceeeeeeccCCCcchhhhcC---CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc
Confidence            45566777999999999999999765533322211   11111  25566776666554333222        3344444


Q ss_pred             CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         329 DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       329 ~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                      ++-+.     +.|+.+++||.. |-+|+-|++||.||++.++.++..                ...+.|.++..+|    
T Consensus       549 GhtDG-----ascIdis~dGtk-lWTGGlDntvRcWDlregrqlqqh----------------dF~SQIfSLg~cP----  602 (705)
T KOG0639|consen  549 GHTDG-----ASCIDISKDGTK-LWTGGLDNTVRCWDLREGRQLQQH----------------DFSSQIFSLGYCP----  602 (705)
T ss_pred             CCCCC-----ceeEEecCCCce-eecCCCccceeehhhhhhhhhhhh----------------hhhhhheecccCC----
Confidence            44444     789999999998 699999999999999988766543                3457899999999    


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEE
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRS  487 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~  487 (540)
                      .+.+++.|-..+.|.|-....            .-...+.-|+..|.++.|.+.|++++|.+.|..+-.|. .-|.-+..
T Consensus       603 ~~dWlavGMens~vevlh~sk------------p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq  670 (705)
T KOG0639|consen  603 TGDWLAVGMENSNVEVLHTSK------------PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  670 (705)
T ss_pred             CccceeeecccCcEEEEecCC------------ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee
Confidence            899999999999999988654            23466778999999999999999999999999999994 46665555


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEec
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTM  522 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~  522 (540)
                      .+...   +|.++.+|.|.++|++|+ |....+|.+
T Consensus       671 skE~S---sVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  671 SKESS---SVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccccC---cceeeeeccCceEEEecCCCcceEEEEE
Confidence            54332   689999999999999975 556777653

>KOG0321|consensus

Probab=99.54  E-value=8.1e-14  Score=143.72  Aligned_cols=211  Identities=9%  Similarity=0.077  Sum_probs=131.3

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccC---CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQS---PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH  339 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~---~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~  339 (540)
                      ....+|++++|.++|.||+.+..+.+.   ++|.+                                         .  +
T Consensus       111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~-----------------------------------------S--v  147 (720)
T KOG0321|consen  111 GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG-----------------------------------------S--V  147 (720)
T ss_pred             CceeEEEccCCceeeeeeeccceeecceeeccccc-----------------------------------------c--c
Confidence            455699999999999999876554332   22322                                         2  2


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeE--E-----EEEecccce---e--eeeeEEEeeccCcceEE---EEecc
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARI--V-----QIIFGHYGV---V--TSRIVQIIFGHYGVVTC---LSRSE  404 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~--~-----~~l~~~~~~---v--~~~~~~~l~~h~~~Vt~---l~~sp  404 (540)
                      ..++|.|....+|++|+.||.|.|||++-...  .     ...-.|...   .  ..+.+....+|...+.+   +.+..
T Consensus       148 kS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk  227 (720)
T KOG0321|consen  148 KSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK  227 (720)
T ss_pred             chhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe
Confidence            23344677777899999999999999874331  0     011122221   0  01222223445444444   34444


Q ss_pred             CccCCCcEEEEEeC-CCcEEEEEcCCCcccccCCCCCCcceEEeccC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         405 CNITADCFIASGSA-DCTVLLWHWNARTQSIVGETDTPTPRATLTGH---EQPVTSVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       405 ~~~~dg~~l~sgs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h---~~~V~~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                          |...|||+|. |+.|+|||++........+   ......+..|   .-.++++.....|.++.+.|.|+.|+.|+.
T Consensus       228 ----De~tlaSaga~D~~iKVWDLRk~~~~~r~e---p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm  300 (720)
T KOG0321|consen  228 ----DESTLASAGAADSTIKVWDLRKNYTAYRQE---PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM  300 (720)
T ss_pred             ----ccceeeeccCCCcceEEEeecccccccccC---CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence                8889999987 9999999998754332111   1122223333   336778888888888888788999999976


Q ss_pred             CC---cEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         481 FG---DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       481 ~g---~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      .+   .++..+.++.....-..-..+||+.++++| .|...++|-++
T Consensus       301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs  347 (720)
T KOG0321|consen  301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS  347 (720)
T ss_pred             cccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence            33   233444433221011234568999999996 58999999876

>KOG2096|consensus

Probab=99.54  E-value=2e-13  Score=130.41  Aligned_cols=198  Identities=14%  Similarity=0.123  Sum_probs=133.5

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEE
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRH  339 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~  339 (540)
                      ....+.+++|||.|.+|.+|+..+ .   .+++-                             ...++.          -
T Consensus       195 iA~~~k~imsas~dt~i~lw~lkG-q---~L~~i-----------------------------dtnq~~----------n  231 (420)
T KOG2096|consen  195 IAGNAKYIMSASLDTKICLWDLKG-Q---LLQSI-----------------------------DTNQSS----------N  231 (420)
T ss_pred             ecCCceEEEEecCCCcEEEEecCC-c---eeeee-----------------------------cccccc----------c
Confidence            334677899999999999999742 1   00000                             000110          1


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCe--EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNAR--IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~--~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...++||+|++ ||+++..--|++|.+--++  ..+..         ..+..|+||+..|+.++|++    +...++|.|
T Consensus       232 ~~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~fqev---------~rvf~LkGH~saV~~~aFsn----~S~r~vtvS  297 (420)
T KOG2096|consen  232 YDAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGTFQEV---------KRVFSLKGHQSAVLAAAFSN----SSTRAVTVS  297 (420)
T ss_pred             cceeeCCCCcE-EEEecCCCCceEEEEEeccCcchhhh---------hhhheeccchhheeeeeeCC----CcceeEEEe
Confidence            23467999997 5666678889999875322  11111         12345589999999999999    999999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEE----eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE-eCCCcEEEEec-CC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRAT----LTGHEQPVTSVAISAELGLVVSGSQLGPVLVH-TTFGDLLRSLD-PP  491 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~----l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw-~~~g~~~~~l~-~~  491 (540)
                      .||+.+|||++..-..    ...++.+..    +..-.+.-..++++|+|+.||.+. ..++.++ ..+|+..-++. .|
T Consensus       298 kDG~wriwdtdVrY~~----~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h  372 (420)
T KOG2096|consen  298 KDGKWRIWDTDVRYEA----GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIH  372 (420)
T ss_pred             cCCcEEEeeccceEec----CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhh
Confidence            9999999998642110    001111211    222233344899999999887665 4467776 45777665554 35


Q ss_pred             CCCCCceEEEEeeCCCEEEEecCCeEEEEe
Q psy1242         492 SGFASPESVVMSREGVIVVNYERGHIAAFT  521 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~dg~I~lw~  521 (540)
                      .+  .|.+|+|+++|+++++.+|..++++.
T Consensus       373 ~~--~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  373 ST--TISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             cC--ceeeEEecCCCcEEeeecceeeeeec
Confidence            55  68999999999999998899998875

>KOG2055|consensus

Probab=99.53  E-value=6.6e-13  Score=132.49  Aligned_cols=224  Identities=14%  Similarity=0.140  Sum_probs=156.6

Q ss_pred             ecccceeeecCCcEEEEEccCcceEEEEcCCCCC--cccCCCCcCCCCCCCCCccccCCCC-eeeccCC-------CCCC
Q psy1242         252 VTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSN-------NNAP  321 (540)
Q Consensus       252 ~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~--~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~-------~~~~  321 (540)
                      .+.++.+++++..-++++|+.|++++++.+.+..  ..+..-+.   ..+.....|.++|. .+.+++.       +...
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~---~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE---KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec---cCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            3445666666666669999999999999987643  33333333   34444567888886 3333320       0000


Q ss_pred             ccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242         322 VPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS  401 (540)
Q Consensus       322 ~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~  401 (540)
                      ....++..+.... .-....|.+++++++ |+..+..|-|.+-...+++.+..+                .-.+.|+.++
T Consensus       290 ak~~k~~~~~g~e-~~~~e~FeVShd~~f-ia~~G~~G~I~lLhakT~eli~s~----------------KieG~v~~~~  351 (514)
T KOG2055|consen  290 AKVTKLKPPYGVE-EKSMERFEVSHDSNF-IAIAGNNGHIHLLHAKTKELITSF----------------KIEGVVSDFT  351 (514)
T ss_pred             cccccccCCCCcc-cchhheeEecCCCCe-EEEcccCceEEeehhhhhhhhhee----------------eeccEEeeEE
Confidence            1111222222222 112567888999996 688888999999999999988877                3467899999


Q ss_pred             eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         402 RSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ-PVTSVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       402 ~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                      |+.    ||+.|+.++.+|.|.+||++.           ..+++.+....+ .-+++|.|++++++|+||..|.|.|++.
T Consensus       352 fsS----dsk~l~~~~~~GeV~v~nl~~-----------~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  352 FSS----DSKELLASGGTGEVYVWNLRQ-----------NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             Eec----CCcEEEEEcCCceEEEEecCC-----------cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence            998    999999999999999999987           345666643222 3467788899999999999999999864


Q ss_pred             -------CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec
Q psy1242         481 -------FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  513 (540)
Q Consensus       481 -------~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~  513 (540)
                             +.+++.++..-..  .|+++.|++|+++||.++
T Consensus       417 ~s~~~s~~PkPik~~dNLtt--~Itsl~Fn~d~qiLAiaS  454 (514)
T KOG2055|consen  417 NSCFASTNPKPIKTVDNLTT--AITSLQFNHDAQILAIAS  454 (514)
T ss_pred             chhhccCCCCchhhhhhhhe--eeeeeeeCcchhhhhhhh
Confidence                   2344555544444  689999999999998754

>KOG1332|consensus

Probab=99.52  E-value=8.4e-14  Score=128.70  Aligned_cols=166  Identities=17%  Similarity=0.151  Sum_probs=126.2

Q ss_pred             CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         332 SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       332 ~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      .+..++.-..++--.-|. |||+++.||.|.||.-+.|+-.+..             ....|...|++|+|.|.  +-|-
T Consensus        54 Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~-------------e~~~h~~SVNsV~waph--eygl  117 (299)
T KOG1332|consen   54 GHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAY-------------EHAAHSASVNSVAWAPH--EYGL  117 (299)
T ss_pred             CCCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhh-------------hhhhhcccceeeccccc--ccce
Confidence            344455555554333677 7899999999999998877533222             12679999999999993  3567


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC---C-----------CEEEEEeCCCcEEE
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE---L-----------GLVVSGSQLGPVLV  477 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g-----------~~lasgs~Dg~v~i  477 (540)
                      .|++++.||+|.|.+.+....        .........|.-.|++++|.|.   |           +.|+||+.|..|+|
T Consensus       118 ~LacasSDG~vsvl~~~~~g~--------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vki  189 (299)
T KOG1332|consen  118 LLACASSDGKVSVLTYDSSGG--------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKI  189 (299)
T ss_pred             EEEEeeCCCcEEEEEEcCCCC--------ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceee
Confidence            899999999999999876411        1233556789999999999996   4           46999999999999


Q ss_pred             EeCCC---cEEEEecCCCCCCCceEEEEeeCC----CEEEE-ecCCeEEEEecC
Q psy1242         478 HTTFG---DLLRSLDPPSGFASPESVVMSREG----VIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       478 w~~~g---~~~~~l~~~~~~~~v~~l~fspdg----~~l~s-~~dg~I~lw~~~  523 (540)
                      |..+.   ..-++|.+|.+  -|..++|.|.-    ..||+ +.||++.||+.+
T Consensus       190 W~~~~~~w~~e~~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  190 WKFDSDSWKLERTLEGHKD--WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             eecCCcchhhhhhhhhcch--hhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            96633   55677999999  56999999964    36776 568999999865

>KOG2106|consensus

Probab=99.52  E-value=3.5e-12  Score=128.53  Aligned_cols=246  Identities=15%  Similarity=0.158  Sum_probs=162.1

Q ss_pred             EEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccC-CCCeeeccCCC------CCCccccccCCCcCcceeeEE
Q psy1242         267 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPILTHPTSNN------NAPVPKRHLGDNFSQKLRVRH  339 (540)
Q Consensus       267 lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~------~~~~~~~~~~~~~~~~~~v~~  339 (540)
                      .+-.|.+..+.+||-.-+.......-.+++.   ....|.| |+.++.+....      .......+..+.|.+.-+-.+
T Consensus       173 ~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v---~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~V  249 (626)
T KOG2106|consen  173 AVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV---FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFV  249 (626)
T ss_pred             EecCCCccccchhhchhhhccCcceeccceE---EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEE
Confidence            4456777888899976544333222221111   1123333 44444443210      000000011122333223458


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-----------------------------------
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-----------------------------------  384 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-----------------------------------  384 (540)
                      .|++|.++|.  +++|..+|.|.||+..+.+..+...+|.+.|.+                                   
T Consensus       250 l~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe  327 (626)
T KOG2106|consen  250 LCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPE  327 (626)
T ss_pred             EEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCch
Confidence            9999999998  589999999999999888877777788877743                                   


Q ss_pred             -------------------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccc
Q psy1242         385 -------------------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQS  433 (540)
Q Consensus       385 -------------------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~  433 (540)
                                                     ....+..+|.+....++.+|    +...++|++.|+.+++|+ ..    
T Consensus       328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp----s~~q~~T~gqdk~v~lW~-~~----  398 (626)
T KOG2106|consen  328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP----SKNQLLTCGQDKHVRLWN-DH----  398 (626)
T ss_pred             hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC----ChhheeeccCcceEEEcc-CC----
Confidence                                           22344568999999999999    889999999999999998 21    


Q ss_pred             ccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec
Q psy1242         434 IVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  513 (540)
Q Consensus       434 ~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~  513 (540)
                              ++.-+ .--..++.|++|+|.| .+|.|+..|...+-+.+.+.+-++.....  ++++++|+|+|.++|.|+
T Consensus       399 --------k~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~--~ls~v~ysp~G~~lAvgs  466 (626)
T KOG2106|consen  399 --------KLEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNE--QLSVVRYSPDGAFLAVGS  466 (626)
T ss_pred             --------ceeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCC--ceEEEEEcCCCCEEEEec
Confidence                    12211 2235678999999999 99999999998776543344434433344  889999999999999965


Q ss_pred             -CCeEEEEecC--CcEEEeee--cCCccee
Q psy1242         514 -RGHIAAFTMN--GNRLRHES--HNDNLQK  538 (540)
Q Consensus       514 -dg~I~lw~~~--g~~l~~~~--~~~~V~~  538 (540)
                       |+.|++|.++  |+.+....  +..+|+.
T Consensus       467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ith  496 (626)
T KOG2106|consen  467 HDNHIYIYRVSANGRKYSRVGKCSGSPITH  496 (626)
T ss_pred             CCCeEEEEEECCCCcEEEEeeeecCceeEE
Confidence             8999999765  76665553  3445443

>KOG0270|consensus

Probab=99.52  E-value=6.7e-13  Score=131.95  Aligned_cols=191  Identities=13%  Similarity=0.095  Sum_probs=136.6

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  342 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  342 (540)
                      -..+|||+|.|.||++||+.++++..+..|.                                        .  -.+.++
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~----------------------------------------~--k~Vq~l  292 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHH----------------------------------------G--KKVQTL  292 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhc----------------------------------------C--CceeEE
Confidence            3567999999999999999876654433321                                        0  026778


Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV  422 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV  422 (540)
                      .|+|....++.+|+.|++|.+.|.+.......-               -.-.+.|-.++|.|.   ....++++..||+|
T Consensus       293 ~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~---------------wk~~g~VEkv~w~~~---se~~f~~~tddG~v  354 (463)
T KOG0270|consen  293 EWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE---------------WKFDGEVEKVAWDPH---SENSFFVSTDDGTV  354 (463)
T ss_pred             EecCCCceEEEeccccceEEeeeccCccccCce---------------EEeccceEEEEecCC---CceeEEEecCCceE
Confidence            888887778899999999999999842221111               123577889999984   55678888999999


Q ss_pred             EEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCcEEEEecCCCCCC-CceEE
Q psy1242         423 LLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFA-SPESV  500 (540)
Q Consensus       423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~-~v~~l  500 (540)
                      +-+|++..          ++++.++..|.++|.++++++.- .++++++.|+.|++|...+.--+....|.-.+ ...|.
T Consensus       355 ~~~D~R~~----------~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~  424 (463)
T KOG0270|consen  355 YYFDIRNP----------GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF  424 (463)
T ss_pred             EeeecCCC----------CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence            99999863          47899999999999999999854 47899999999999965332222122221100 23566


Q ss_pred             EEeeCCCEE-EE-ecCCeEEEEecC
Q psy1242         501 VMSREGVIV-VN-YERGHIAAFTMN  523 (540)
Q Consensus       501 ~fspdg~~l-~s-~~dg~I~lw~~~  523 (540)
                      ++.|+-.++ +. |..+.+++||+-
T Consensus       425 ~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             ccCCCcceEEEecCccceEEEeecc
Confidence            666765443 33 556789999965

>KOG1063|consensus

Probab=99.52  E-value=4.7e-13  Score=139.27  Aligned_cols=137  Identities=18%  Similarity=0.133  Sum_probs=108.3

Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEeCCC-----cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADC-----TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA  461 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg-----tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp  461 (540)
                      ++.+.||...|.|++.+|    +|++++|++...     -|+||+...           ...++.+.+|.-.|+.++|||
T Consensus       518 v~KLYGHGyEv~~l~~s~----~gnliASaCKS~~~ehAvI~lw~t~~-----------W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISP----TGNLIASACKSSLKEHAVIRLWNTAN-----------WLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             hHHhccCceeEEEEEecC----CCCEEeehhhhCCccceEEEEEeccc-----------hhhhheecccceEEEEEEECC
Confidence            355679999999999999    999999998754     578998665           334568899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC----c-EEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-C--cEEE---e
Q psy1242         462 ELGLVVSGSQLGPVLVHTTFG----D-LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-G--NRLR---H  529 (540)
Q Consensus       462 dg~~lasgs~Dg~v~iw~~~g----~-~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g--~~l~---~  529 (540)
                      ||++|++.|+|.++.+|....    . -...++.|..  -|+++.|+|++++++++ .|.+|++|... +  +.+.   .
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtR--IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~  660 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTR--IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC  660 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccce--EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch
Confidence            999999999999999995411    1 1233566776  68999999999999985 58999999876 4  3333   3


Q ss_pred             eecCCcceecC
Q psy1242         530 ESHNDNLQKTA  540 (540)
Q Consensus       530 ~~~~~~V~~va  540 (540)
                      ..+.+.|++++
T Consensus       661 ~~~~~aVTAv~  671 (764)
T KOG1063|consen  661 LKFSLAVTAVA  671 (764)
T ss_pred             hccCCceeeEE
Confidence            34777777653

>KOG1273|consensus

Probab=99.50  E-value=5.9e-13  Score=127.12  Aligned_cols=164  Identities=16%  Similarity=0.234  Sum_probs=124.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..|+.|++.|.+ +|.|..||.|.|||+.|...-..+               .+|..+|+|++||+    +|+.|+|+|.
T Consensus        26 a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar~l---------------saH~~pi~sl~WS~----dgr~LltsS~   85 (405)
T KOG1273|consen   26 AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIARML---------------SAHVRPITSLCWSR----DGRKLLTSSR   85 (405)
T ss_pred             cceEEeccCcce-eeeeccCCcEEEEEccccchhhhh---------------hccccceeEEEecC----CCCEeeeecC
Confidence            578999999995 799999999999999988877777               89999999999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccc--c-C---------CCCCCcceE-----------------EeccCC------CCEEEEEEcCCC
Q psy1242         419 DCTVLLWHWNARTQSI--V-G---------ETDTPTPRA-----------------TLTGHE------QPVTSVAISAEL  463 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~--~-~---------~~~~~~~~~-----------------~l~~h~------~~V~~v~~spdg  463 (540)
                      |..|++||+..++...  . .         .....+++.                 .+-...      ..-.+..|.+.|
T Consensus        86 D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g  165 (405)
T KOG1273|consen   86 DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG  165 (405)
T ss_pred             CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence            9999999987654211  0 0         000011111                 110000      011233477789


Q ss_pred             CEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         464 GLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       464 ~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      +++++|...|.+.+++. +-+++..++.... ..|.++.|+..|+.++. .+|+.|+.|++.
T Consensus       166 ~yIitGtsKGkllv~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  166 KYIITGTSKGKLLVYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             CEEEEecCcceEEEEecchheeeeeeeechh-eeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            99999999999998765 7788888776552 16899999999999988 679999999865

>KOG2106|consensus

Probab=99.50  E-value=4.3e-12  Score=127.92  Aligned_cols=146  Identities=13%  Similarity=0.111  Sum_probs=114.5

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC  420 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg  420 (540)
                      -++.+|+... +++++.|+.+++|+  ..++..+.                .-.+++.|+.|+|    .| .++.|...|
T Consensus       373 gla~hps~~q-~~T~gqdk~v~lW~--~~k~~wt~----------------~~~d~~~~~~fhp----sg-~va~Gt~~G  428 (626)
T KOG2106|consen  373 GLATHPSKNQ-LLTCGQDKHVRLWN--DHKLEWTK----------------IIEDPAECADFHP----SG-VVAVGTATG  428 (626)
T ss_pred             eEEcCCChhh-eeeccCcceEEEcc--CCceeEEE----------------EecCceeEeeccC----cc-eEEEeeccc
Confidence            4566788774 68888999999999  34544332                2357889999999    78 999999999


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE--eCCCcEEEEecCCCCCCCce
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH--TTFGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw--~~~g~~~~~l~~~~~~~~v~  498 (540)
                      ...+.|..+.           ..+..-. ...++++++++|+|.+||.||.|+.|.|+  +.+|.......-+.+ .+|+
T Consensus       429 ~w~V~d~e~~-----------~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~it  495 (626)
T KOG2106|consen  429 RWFVLDTETQ-----------DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPIT  495 (626)
T ss_pred             eEEEEecccc-----------eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeE
Confidence            9999997762           2233333 37899999999999999999999999998  457766554444433 3899


Q ss_pred             EEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         499 SVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       499 ~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .+.||+|++++.+ +.|-.|..|.+.
T Consensus       496 hLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  496 HLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             EeeecCCCceEEeccCceEEEEEccc
Confidence            9999999999998 567889999655

>KOG2919|consensus

Probab=99.49  E-value=1.5e-12  Score=124.78  Aligned_cols=176  Identities=20%  Similarity=0.316  Sum_probs=130.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEc-cCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFST-DNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~-~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ..|++|+|||.+| .+| ..++|+++|+ +.|+.......        ..+--.+..+.+.|++|+|.   +...++.|+
T Consensus       161 AhsL~Fs~DGeql-faG-ykrcirvFdt~RpGr~c~vy~t--------~~~~k~gq~giisc~a~sP~---~~~~~a~gs  227 (406)
T KOG2919|consen  161 AHSLQFSPDGEQL-FAG-YKRCIRVFDTSRPGRDCPVYTT--------VTKGKFGQKGIISCFAFSPM---DSKTLAVGS  227 (406)
T ss_pred             heeEEecCCCCeE-eec-ccceEEEeeccCCCCCCcchhh--------hhcccccccceeeeeeccCC---CCcceeeec
Confidence            6788999999984 566 4789999999 55653322200        00001456788999999996   777999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeC--CCcEEEEecCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVHTT--FGDLLRSLDPPSGF  494 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~--~g~~~~~l~~~~~~  494 (540)
                      ...++-|+....           ..|++.+-||.+.|+.++|.++|..|.+|++ |..|..|+.  .+.++..|..|.+.
T Consensus       228 Y~q~~giy~~~~-----------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~  296 (406)
T KOG2919|consen  228 YGQRVGIYNDDG-----------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGD  296 (406)
T ss_pred             ccceeeeEecCC-----------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccC
Confidence            999988887554           4688999999999999999999999999985 667788976  56777777777551


Q ss_pred             CCceEEEE--eeCCCEEEEe-cCCeEEEEecC--CcEEE-eeecCCcceec
Q psy1242         495 ASPESVVM--SREGVIVVNY-ERGHIAAFTMN--GNRLR-HESHNDNLQKT  539 (540)
Q Consensus       495 ~~v~~l~f--spdg~~l~s~-~dg~I~lw~~~--g~~l~-~~~~~~~V~~v  539 (540)
                       .-..|-|  .|+|++|++| .+|.|++||++  |+... ...+++.++.+
T Consensus       297 -TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgv  346 (406)
T KOG2919|consen  297 -TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGV  346 (406)
T ss_pred             -ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccce
Confidence             1134544  6899999997 68999999987  56333 33366555544

>KOG4328|consensus

Probab=99.49  E-value=1.5e-12  Score=129.84  Aligned_cols=233  Identities=14%  Similarity=0.131  Sum_probs=154.6

Q ss_pred             cEEEEEccCcceEEEEcCCCCC---ccc--CCCCcCCCCCC-------CCCccccCCCCeeeccCCCCCCccccccCCCc
Q psy1242         264 SVVTVTANHQFAINRWNPDYAA---SIQ--SPSYAETPGSP-------PGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF  331 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~---~~~--~~~~~~~v~~~-------~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~  331 (540)
                      ..+++.|..-+.|=+||..+..   ...  ...|+.+|...       ...++.|.||++....      .........+
T Consensus       200 ~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D------~~~~i~e~v~  273 (498)
T KOG4328|consen  200 RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD------FEGNISEEVL  273 (498)
T ss_pred             ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee------ecchhhHHHh
Confidence            3567788889999999995222   111  22455444211       1124445555444221      0000111111


Q ss_pred             C-cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeE-EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         332 S-QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI-VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       332 ~-~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~-~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                      . ..-.+....+.++.+...+++.+.+ |.+.+||.++++. ...+               .-|...|++|+++|+   .
T Consensus       274 s~~~d~~~fs~~d~~~e~~~vl~~~~~-G~f~~iD~R~~~s~~~~~---------------~lh~kKI~sv~~NP~---~  334 (498)
T KOG4328|consen  274 SLDTDNIWFSSLDFSAESRSVLFGDNV-GNFNVIDLRTDGSEYENL---------------RLHKKKITSVALNPV---C  334 (498)
T ss_pred             hcCccceeeeeccccCCCccEEEeecc-cceEEEEeecCCccchhh---------------hhhhcccceeecCCC---C
Confidence            1 0123445666777777765555544 4999999998765 4444               568889999999996   7


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-----CcE
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-----GDL  484 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-----g~~  484 (540)
                      ..+|+|+|.|++++|||++....+       ..|+.....|...|.+..|||++..|++.|.|..|+||+..     -.+
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K-------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGK-------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             chheeecccCcceeeeehhhhcCC-------CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence            789999999999999999875432       12445556899999999999999889999999999999762     223


Q ss_pred             EEEecCC---CCCCCceEEEEeeCCCEEEEec-CCeEEEEecCCcEEE
Q psy1242         485 LRSLDPP---SGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLR  528 (540)
Q Consensus       485 ~~~l~~~---~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~g~~l~  528 (540)
                      ..++...   ..+..+-..+|.|+..+++.|. -..|-+++.+|+.+.
T Consensus       408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v  455 (498)
T KOG4328|consen  408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV  455 (498)
T ss_pred             cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence            4444432   2344567889999999999874 466999999866643

>KOG0650|consensus

Probab=99.48  E-value=2e-13  Score=139.90  Aligned_cols=152  Identities=20%  Similarity=0.209  Sum_probs=121.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.++.|+|...+|+++.  -..|+|||+..++.++.+               ....-.|..++.+|    .|..|+.|+.
T Consensus       569 vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL---------------~tg~kwiS~msihp----~GDnli~gs~  627 (733)
T KOG0650|consen  569 VQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKL---------------LTGSKWISSMSIHP----NGDNLILGSY  627 (733)
T ss_pred             eeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHH---------------hcCCeeeeeeeecC----CCCeEEEecC
Confidence            66777777777655444  467888888776666555               44556799999999    8999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE------eC-CC---cEEEEe
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH------TT-FG---DLLRSL  488 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw------~~-~g---~~~~~l  488 (540)
                      |+.+..+|++..          .++.+++.-|...|++|++++...+++||+.||++.|+      +. ..   -.+..+
T Consensus       628 d~k~~WfDldls----------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L  697 (733)
T KOG0650|consen  628 DKKMCWFDLDLS----------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL  697 (733)
T ss_pred             CCeeEEEEcccC----------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence            999999998763          36888999999999999999999999999999999874      11 11   245778


Q ss_pred             cCCCCC--CCceEEEEeeCCCEEEE-ecCCeEEEEe
Q psy1242         489 DPPSGF--ASPESVVMSREGVIVVN-YERGHIAAFT  521 (540)
Q Consensus       489 ~~~~~~--~~v~~l~fspdg~~l~s-~~dg~I~lw~  521 (540)
                      ++|...  ..|-.+.|+|...+|++ |.||+|++|.
T Consensus       698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            888642  34778899999999988 6789999984

>KOG1445|consensus

Probab=99.47  E-value=1.8e-13  Score=140.74  Aligned_cols=170  Identities=16%  Similarity=0.116  Sum_probs=128.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..++|.|-...-||.|+.||.|++|.+..+..-....        .....+.+|...|+++.|+|.   -...|++++.
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~--------tPe~~lt~h~eKI~slRfHPL---AadvLa~asy  698 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM--------TPEKILTIHGEKITSLRFHPL---AADVLAVASY  698 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--------CcceeeecccceEEEEEecch---hhhHhhhhhc
Confidence            78888988544347999999999999987654322110        112234889999999999994   5678999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C-CcEEEEecCCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-F-GDLLRSLDPPSGFAS  496 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~-g~~~~~l~~~~~~~~  496 (540)
                      |.+|++||++.           .+....+.+|++.|.+++|||+|+.+|+.|.||+++|+.. . .+.++.-+++.+. .
T Consensus       699 d~Ti~lWDl~~-----------~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt-R  766 (1012)
T KOG1445|consen  699 DSTIELWDLAN-----------AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT-R  766 (1012)
T ss_pred             cceeeeeehhh-----------hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccC-c
Confidence            99999999987           3456788999999999999999999999999999999965 2 3445554444331 3


Q ss_pred             ceEEEEeeCCCEEEE-e----cCCeEEEEecC---CcEEEeee
Q psy1242         497 PESVVMSREGVIVVN-Y----ERGHIAAFTMN---GNRLRHES  531 (540)
Q Consensus       497 v~~l~fspdg~~l~s-~----~dg~I~lw~~~---g~~l~~~~  531 (540)
                      --.|.|.-||+++++ |    +..+|.+|+.+   +..|.+..
T Consensus       767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~  809 (1012)
T KOG1445|consen  767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV  809 (1012)
T ss_pred             ceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence            357899999999887 4    34678888744   55555443

>KOG1009|consensus

Probab=99.47  E-value=5.2e-13  Score=131.44  Aligned_cols=169  Identities=20%  Similarity=0.184  Sum_probs=130.7

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE---EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ---IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~---~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ..+.+.+++...+|+|+.|..|+||-+..+..-.   .+         .....|..|...|+++.|+|    +|+.|+||
T Consensus        17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V---------~y~s~Ls~H~~aVN~vRf~p----~gelLASg   83 (434)
T KOG1009|consen   17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV---------EYLSSLSRHTRAVNVVRFSP----DGELLASG   83 (434)
T ss_pred             EEEEeccCcccceecccCccceeeeeeeecCCCCCceeE---------EEeecccCCcceeEEEEEcC----CcCeeeec
Confidence            3444455555347999999999999876543221   22         23455689999999999999    99999999


Q ss_pred             eCCCcEEEEEcCCCccccc-----CCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecC
Q psy1242         417 SADCTVLLWHWNARTQSIV-----GETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDP  490 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~-----~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~  490 (540)
                      +.+|.|.+|-.........     ...+.......+.+|...|..++|+|++..+++++.|..+++|+. .|+++..+..
T Consensus        84 ~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d  163 (434)
T KOG1009|consen   84 GDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD  163 (434)
T ss_pred             CCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence            9999999998652110000     001223345677899999999999999999999999999999987 8999999999


Q ss_pred             CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         491 PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      |..  .|..++|.|.++++++ +.|...+.++++
T Consensus       164 h~~--yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  164 HEH--YVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             ccc--ccceeecchhhhhhhhhccCcccceeeee
Confidence            988  7899999999999998 667766666665

>KOG0307|consensus

Probab=99.46  E-value=3.1e-13  Score=147.96  Aligned_cols=227  Identities=13%  Similarity=0.135  Sum_probs=168.3

Q ss_pred             EEEEEccCcceEEEEcCCCC---C----cccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCccccccC---CCcCc
Q psy1242         265 VVTVTANHQFAINRWNPDYA---A----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLG---DNFSQ  333 (540)
Q Consensus       265 ~~lvs~s~D~tv~~W~~~~~---~----~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~~---~~~~~  333 (540)
                      .++|.|..||.|-+||+..-   .    ......|.+.|..    +.|..... ++++|++++.. ..|.+.   .++..
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g----LDfN~~q~nlLASGa~~geI-~iWDlnn~~tP~~~  155 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLG----LDFNPFQGNLLASGADDGEI-LIWDLNKPETPFTP  155 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceee----eeccccCCceeeccCCCCcE-EEeccCCcCCCCCC
Confidence            56889999999999998752   1    2233457777753    55666554 66666543332 333332   22221


Q ss_pred             ---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         334 ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       334 ---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                         ...-.+.|++|+..-.++||+|+.+|.+.|||++..+.+..+..+             +-...++.|+|+|.   +.
T Consensus       156 ~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-------------~~~~~~S~l~WhP~---~a  219 (1049)
T KOG0307|consen  156 GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-------------PGRMHCSVLAWHPD---HA  219 (1049)
T ss_pred             CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-------------CCccceeeeeeCCC---Cc
Confidence               123348899999998889999999999999999988777666211             11235789999994   45


Q ss_pred             cEEEEEeCCC---cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         411 CFIASGSADC---TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       411 ~~l~sgs~Dg---tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                      ..|++++.|.   .|.+||++...          .+++++.+|...|.++.|++.+ ++++|++.|+.|.+|+. +|+.+
T Consensus       220 Tql~~As~dd~~PviqlWDlR~as----------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl  289 (1049)
T KOG0307|consen  220 TQLLVASGDDSAPVIQLWDLRFAS----------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL  289 (1049)
T ss_pred             eeeeeecCCCCCceeEeecccccC----------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence            6777777654   79999998643          5788999999999999999976 79999999999999965 89999


Q ss_pred             EEecCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecCC
Q psy1242         486 RSLDPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g  524 (540)
                      ..+.....  .+..+.|.|... .+++ +-+|.|-||++.|
T Consensus       290 ~~~p~~~n--W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  290 GELPAQGN--WCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             eecCCCCc--ceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            99988666  458999999776 4444 4599999999874

>KOG1539|consensus

Probab=99.46  E-value=1.1e-11  Score=131.67  Aligned_cols=127  Identities=14%  Similarity=0.136  Sum_probs=100.3

Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      ..+++++.++    -|++.+.|...|+|.+++++.+           .....+   ..|..+|++++...-++.++|++.
T Consensus       449 ~~~~av~vs~----CGNF~~IG~S~G~Id~fNmQSG-----------i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~  513 (910)
T KOG1539|consen  449 INATAVCVSF----CGNFVFIGYSKGTIDRFNMQSG-----------IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA  513 (910)
T ss_pred             cceEEEEEec----cCceEEEeccCCeEEEEEcccC-----------eeecccccCccccCceeEEEecCCCceEEEccC
Confidence            5788999999    4889999999999999998863           233444   589999999999988899999999


Q ss_pred             CCcEEEEeCCCcE-EE-----------------------------------------EecCCCCCCCceEEEEeeCCCEE
Q psy1242         472 LGPVLVHTTFGDL-LR-----------------------------------------SLDPPSGFASPESVVMSREGVIV  509 (540)
Q Consensus       472 Dg~v~iw~~~g~~-~~-----------------------------------------~l~~~~~~~~v~~l~fspdg~~l  509 (540)
                      +|.+++|+..++. +.                                         .+.+|.+  .|++++|||||++|
T Consensus       514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n--ritd~~FS~DgrWl  591 (910)
T KOG1539|consen  514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN--RITDMTFSPDGRWL  591 (910)
T ss_pred             cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc--ceeeeEeCCCCcEE
Confidence            9999999753322 22                                         2235666  78999999999999


Q ss_pred             EEe-cCCeEEEEecC-CcEEEeeecCCccee
Q psy1242         510 VNY-ERGHIAAFTMN-GNRLRHESHNDNLQK  538 (540)
Q Consensus       510 ~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~  538 (540)
                      +++ -|++|++||+- |.++-.+..+.+.++
T Consensus       592 isasmD~tIr~wDlpt~~lID~~~vd~~~~s  622 (910)
T KOG1539|consen  592 ISASMDSTIRTWDLPTGTLIDGLLVDSPCTS  622 (910)
T ss_pred             EEeecCCcEEEEeccCcceeeeEecCCccee
Confidence            995 48999999965 777776665555443

>KOG1036|consensus

Probab=99.45  E-value=2.4e-12  Score=122.84  Aligned_cols=146  Identities=16%  Similarity=0.215  Sum_probs=114.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+.|+|.+..| .+++|||++++||+........+                .|..++.+++|.+     ...+++|+.
T Consensus        16 IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~~~----------------~~~~plL~c~F~d-----~~~~~~G~~   73 (323)
T KOG1036|consen   16 ISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKLKF----------------KHGAPLLDCAFAD-----ESTIVTGGL   73 (323)
T ss_pred             eeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhhhe----------------ecCCceeeeeccC-----CceEEEecc
Confidence            5667778888865 56679999999999877555555                6899999999984     678999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-cEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFG-DLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g-~~~~~l~~~~~~~~v  497 (540)
                      ||.|+.+|+++.+            ...+-.|..+|.||..++.-..+++||.|++|++|+... ....++...+   .|
T Consensus        74 dg~vr~~Dln~~~------------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kV  138 (323)
T KOG1036|consen   74 DGQVRRYDLNTGN------------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KV  138 (323)
T ss_pred             CceEEEEEecCCc------------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc---eE
Confidence            9999999998743            356678999999999999888999999999999998754 2333333322   46


Q ss_pred             eEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         498 ESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       498 ~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .++..+  |..|+. +.+..+.+||+.
T Consensus       139 y~~~v~--g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen  139 YCMDVS--GNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             EEEecc--CCEEEEeecCceEEEEEcc
Confidence            666653  555555 678999999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.45  E-value=8e-12  Score=117.63  Aligned_cols=159  Identities=15%  Similarity=0.154  Sum_probs=112.5

Q ss_pred             EEEEEEEecCCCEEEEEEec--C-------CcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         338 RHNCFVTTVDSRFLLACGFW--D-------NSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~--D-------gsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                      ....+.|+++|.+|++....  |       +...+|-++. +.....++              ....+.|.+++|+|   
T Consensus         7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~--------------l~~~~~I~~~~WsP---   69 (194)
T PF08662_consen    7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE--------------LKKEGPIHDVAWSP---   69 (194)
T ss_pred             ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee--------------ccCCCceEEEEECc---
Confidence            35677899999987766652  1       2244444421 12222220              12345799999999   


Q ss_pred             CCCcEEEE--EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeC-C
Q psy1242         408 TADCFIAS--GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL---GPVLVHTT-F  481 (540)
Q Consensus       408 ~dg~~l~s--gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D---g~v~iw~~-~  481 (540)
                       +|+.++.  |..++.|.+||++.            +++..+.  ...+..|.|||+|++|+.|+.+   |.+.+|+. +
T Consensus        70 -~g~~favi~g~~~~~v~lyd~~~------------~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~  134 (194)
T PF08662_consen   70 -NGNEFAVIYGSMPAKVTLYDVKG------------KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK  134 (194)
T ss_pred             -CCCEEEEEEccCCcccEEEcCcc------------cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence             8888644  45678999999853            3455553  4677899999999999998744   66999977 5


Q ss_pred             CcEEEEecCCCCCCCceEEEEeeCCCEEEEec-------CCeEEEEecCCcEEEeeec
Q psy1242         482 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-------RGHIAAFTMNGNRLRHESH  532 (540)
Q Consensus       482 g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-------dg~I~lw~~~g~~l~~~~~  532 (540)
                      .+.+.+....    .+..++|+|+|++++++.       |+.++||+.+|+++.....
T Consensus       135 ~~~i~~~~~~----~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~  188 (194)
T PF08662_consen  135 KKKISTFEHS----DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF  188 (194)
T ss_pred             CEEeeccccC----cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence            6666665432    358999999999999852       7889999999999887653

>KOG0268|consensus

Probab=99.45  E-value=1.5e-13  Score=133.43  Aligned_cols=168  Identities=14%  Similarity=0.171  Sum_probs=130.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee----------------------------------
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS----------------------------------  384 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~----------------------------------  384 (540)
                      +.|++=+|..-..+|+|+.||.|+|||+....++.++++|.+.|.+                                  
T Consensus        69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s  148 (433)
T KOG0268|consen   69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKS  148 (433)
T ss_pred             cchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeeccc
Confidence            7788777776446899999999999999988888888888876643                                  


Q ss_pred             -----------------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccccc
Q psy1242         385 -----------------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIV  435 (540)
Q Consensus       385 -----------------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~  435 (540)
                                                   ..++.+.-..+.|.|+.|+|.   .-..|++|+.|++|.|+|+++.     
T Consensus       149 ~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpv---ETsILas~~sDrsIvLyD~R~~-----  220 (433)
T KOG0268|consen  149 VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPV---ETSILASCASDRSIVLYDLRQA-----  220 (433)
T ss_pred             cccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCC---cchheeeeccCCceEEEecccC-----
Confidence                                         122333334567888899983   4567888889999999999873     


Q ss_pred             CCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec
Q psy1242         436 GETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  513 (540)
Q Consensus       436 ~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~  513 (540)
                            .|++.+. -+..-+.|+|+|++-.+++|+.|..+..++.  -...+....+|..  .|.++.|||.|+-+++|+
T Consensus       221 ------~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs--AV~dVdfsptG~Efvsgs  291 (433)
T KOG0268|consen  221 ------SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS--AVMDVDFSPTGQEFVSGS  291 (433)
T ss_pred             ------Cccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccce--eEEEeccCCCcchhcccc
Confidence                  3444332 2234567999999989999999999998865  3456777888887  789999999999999865


Q ss_pred             -CCeEEEEecC
Q psy1242         514 -RGHIAAFTMN  523 (540)
Q Consensus       514 -dg~I~lw~~~  523 (540)
                       |.+|++|..+
T Consensus       292 yDksIRIf~~~  302 (433)
T KOG0268|consen  292 YDKSIRIFPVN  302 (433)
T ss_pred             ccceEEEeecC
Confidence             8999988776

>KOG1274|consensus

Probab=99.45  E-value=3.2e-12  Score=137.05  Aligned_cols=216  Identities=11%  Similarity=-0.001  Sum_probs=150.9

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC---cceeeE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS---QKLRVR  338 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~---~~~~v~  338 (540)
                      ....+++++.+.+|.++....+...+.+ .+.    -+.+.+.++.+|..+++|+++..+...........   .++...
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap  140 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP  140 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence            3446899999999999988765543222 222    23346778999999888876655433222211111   122344


Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEee-ccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIF-GHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~-~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.++.++|.+++ ||+.+.||+|+|||++++.+..++.+-...        .. .....++.++|+|    +|..++..+
T Consensus       141 Vl~l~~~p~~~f-LAvss~dG~v~iw~~~~~~~~~tl~~v~k~--------n~~~~s~i~~~~aW~P----k~g~la~~~  207 (933)
T KOG1274|consen  141 VLQLSYDPKGNF-LAVSSCDGKVQIWDLQDGILSKTLTGVDKD--------NEFILSRICTRLAWHP----KGGTLAVPP  207 (933)
T ss_pred             eeeeeEcCCCCE-EEEEecCceEEEEEcccchhhhhcccCCcc--------ccccccceeeeeeecC----CCCeEEeec
Confidence            899999999995 799999999999999999887766221100        00 1134577899999    888888889


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFA  495 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~  495 (540)
                      .|+.|++++....           .....+  ..+...+.++.|+|.|.+||+++.||.|.||+......     |...-
T Consensus       208 ~d~~Vkvy~r~~w-----------e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~  271 (933)
T KOG1274|consen  208 VDNTVKVYSRKGW-----------ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKR  271 (933)
T ss_pred             cCCeEEEEccCCc-----------eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccc
Confidence            9999999997763           344444  23445599999999999999999999999998754222     32222


Q ss_pred             CceEEEEeeCCCEEEE
Q psy1242         496 SPESVVMSREGVIVVN  511 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s  511 (540)
                      .|++++|.|++..+..
T Consensus       272 ~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  272 AVCCEAWKPNANAITL  287 (933)
T ss_pred             eeEEEecCCCCCeeEE
Confidence            6899999999886654

>KOG0642|consensus

Probab=99.44  E-value=1.8e-12  Score=132.48  Aligned_cols=233  Identities=16%  Similarity=0.179  Sum_probs=158.3

Q ss_pred             eeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242         249 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  328 (540)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~  328 (540)
                      +.|..-++...+++-.-+++||+-|+++++|+...     ...+.                        .........++
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk-----~~~s~------------------------~~~~epi~tfr  341 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQK-----AKKSA------------------------EKDVEPILTFR  341 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcc-----cCCcc------------------------ccceeeeEEEe
Confidence            44555566667777777899999999999999832     00000                        11112333333


Q ss_pred             CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         329 DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       329 ~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                      .+-.     .+.|++++++++. +.+|+.||+|+.|++....-  ....+.   ......++.||.+.|..+++|+    
T Consensus       342 aH~g-----PVl~v~v~~n~~~-~ysgg~Dg~I~~w~~p~n~d--p~ds~d---p~vl~~~l~Ghtdavw~l~~s~----  406 (577)
T KOG0642|consen  342 AHEG-----PVLCVVVPSNGEH-CYSGGIDGTIRCWNLPPNQD--PDDSYD---PSVLSGTLLGHTDAVWLLALSS----  406 (577)
T ss_pred             cccC-----ceEEEEecCCceE-EEeeccCceeeeeccCCCCC--cccccC---cchhccceeccccceeeeeecc----
Confidence            3332     2788999999997 68999999999996641100  000000   0011234489999999999999    


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCCC-CC--------------------------------CcceEEecc------
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGET-DT--------------------------------PTPRATLTG------  449 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~-~~--------------------------------~~~~~~l~~------  449 (540)
                      ....|+++|.|||+++|..........+.. +.                                ...+..+..      
T Consensus       407 ~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~  486 (577)
T KOG0642|consen  407 TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP  486 (577)
T ss_pred             cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence            778899999999999999754332111100 00                                000111110      


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcE
Q psy1242         450 -HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNR  526 (540)
Q Consensus       450 -h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~  526 (540)
                       -...+..+.++|.+.+.+++-.|+.|++++. +|.++.....|..  .++++++.|+|.+|+++ .|+.+.+|.++-+.
T Consensus       487 ~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  487 RRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc--eecceeecCCCceEEeecCCceeehhhccchh
Confidence             1134677888999999999999999999755 8999998888888  78999999999999995 58999999987544


Q ss_pred             E
Q psy1242         527 L  527 (540)
Q Consensus       527 l  527 (540)
                      .
T Consensus       565 ~  565 (577)
T KOG0642|consen  565 C  565 (577)
T ss_pred             e
Confidence            3

>KOG0303|consensus

Probab=99.43  E-value=7.5e-12  Score=122.86  Aligned_cols=195  Identities=13%  Similarity=0.100  Sum_probs=136.3

Q ss_pred             CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEE
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNC  341 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~  341 (540)
                      ....++||||.|.+|.+|..-.......+.                .|....              .++     .-++.-
T Consensus        92 fnD~vIASgSeD~~v~vW~IPe~~l~~~lt----------------epvv~L--------------~gH-----~rrVg~  136 (472)
T KOG0303|consen   92 FNDCVIASGSEDTKVMVWQIPENGLTRDLT----------------EPVVEL--------------YGH-----QRRVGL  136 (472)
T ss_pred             cCCceeecCCCCceEEEEECCCcccccCcc----------------cceEEE--------------eec-----ceeEEE
Confidence            356779999999999999974422111000                111111              111     113667


Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      ++|+|....+|++++.|++|.+|++.+|+.+.++               . |.+.|.+++|+.    ||.+|+|++.|..
T Consensus       137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l---------------~-hpd~i~S~sfn~----dGs~l~TtckDKk  196 (472)
T KOG0303|consen  137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL---------------D-HPDMVYSMSFNR----DGSLLCTTCKDKK  196 (472)
T ss_pred             EeecccchhhHhhccCCceEEEEeccCCceeeec---------------C-CCCeEEEEEecc----CCceeeeecccce
Confidence            7889998888999999999999999999988887               4 999999999999    9999999999999


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEeccCCC-CEEEEEEcCCCCEEEEEe---CCCcEEEEeC----CCcEEEEecCCCC
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTGHEQ-PVTSVAISAELGLVVSGS---QLGPVLVHTT----FGDLLRSLDPPSG  493 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~v~~spdg~~lasgs---~Dg~v~iw~~----~g~~~~~l~~~~~  493 (540)
                      |||||.++           ++.+..-.+|.+ .-..+-|-.+|.++.+|-   .+..+-+|+.    ..-.+..+....+
T Consensus       197 vRv~dpr~-----------~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG  265 (472)
T KOG0303|consen  197 VRVIDPRR-----------GTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG  265 (472)
T ss_pred             eEEEcCCC-----------CcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCc
Confidence            99999877           445555567765 334455777888555553   4666778965    2223445544333


Q ss_pred             CCCceEEEEeeCCCEEEE-e-cCCeEEEEecCCc
Q psy1242         494 FASPESVVMSREGVIVVN-Y-ERGHIAAFTMNGN  525 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~g~  525 (540)
                         |.---+.+|..+|.. | +|+.|+-|.++..
T Consensus       266 ---vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  266 ---VLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             ---eEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence               333344677776654 3 5899999988743

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.43  E-value=1.5e-11  Score=122.79  Aligned_cols=209  Identities=11%  Similarity=0.003  Sum_probs=132.2

Q ss_pred             EEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-Ccc--eeeEEEE
Q psy1242         265 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-SQK--LRVRHNC  341 (540)
Q Consensus       265 ~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~~~--~~v~~~~  341 (540)
                      .+.++++.|+.+++||..+........+.    .....+.+++|+.++++++............... ...  ......+
T Consensus        86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (300)
T TIGR03866        86 ILYIANEDDNLVTVIDIETRKVLAEIPVG----VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRF  161 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCeEEeEeeCC----CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccE
Confidence            34566777899999998764433222211    1123467889998777654332221111111100 000  0112456


Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-EeCCC
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-GSADC  420 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-gs~Dg  420 (540)
                      ++|+++|+.+++++..++.|++||+++++.+..+..+...+        .........++|+|    ++++++. .+.++
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~s~----dg~~~~~~~~~~~  229 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV--------HPEAVQPVGIKLTK----DGKTAFVALGPAN  229 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc--------ccccCCccceEECC----CCCEEEEEcCCCC
Confidence            78899999876777779999999999988776662111000        00011234688999    8887544 45577


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeC-CCcEEEEecCCCCCCCce
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTT-FGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~  498 (540)
                      ++.+||.++           .+.+..+ .+...+.+++|+|+|+.|+++ ..+|.|++|+. +++++..++.+.   .++
T Consensus       230 ~i~v~d~~~-----------~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~  294 (300)
T TIGR03866       230 RVAVVDAKT-----------YEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR---LPW  294 (300)
T ss_pred             eEEEEECCC-----------CcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc---ccc
Confidence            899999865           2333333 244578899999999998876 46899999976 788888887654   458


Q ss_pred             EEEEee
Q psy1242         499 SVVMSR  504 (540)
Q Consensus       499 ~l~fsp  504 (540)
                      .++++|
T Consensus       295 ~~~~~~  300 (300)
T TIGR03866       295 GVVVRP  300 (300)
T ss_pred             eeEeCC
Confidence            888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378|consensus

Probab=99.42  E-value=3.7e-12  Score=128.00  Aligned_cols=206  Identities=10%  Similarity=0.066  Sum_probs=146.0

Q ss_pred             cEEEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCC----C--CCccccCCCCeeeccCCCCCCccccccCCCcCccee
Q psy1242         264 SVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSP----P--GNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR  336 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~----~--~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~  336 (540)
                      ..++++++..+.|+|||...... .....|+..|...    .  -..+.+..|.+++.+-      ...+-...|.....
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~------~t~~~tt~f~~~sg  164 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT------KTKQKTTTFTIDSG  164 (673)
T ss_pred             ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEec------ccCccccceecCCC
Confidence            46799999999999999874332 2233566554210    0  0122333344443331      11111223333322


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      -.+.-+.+++..+++|.+++.+|.|.+||++....+..+.              ..|..+...|+|+|.   +..+|++.
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--------------~~HsAP~~gicfsps---ne~l~vsV  227 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--------------EAHSAPCRGICFSPS---NEALLVSV  227 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--------------hhccCCcCcceecCC---ccceEEEe
Confidence            2356788899999999999999999999998666554431              679999999999995   66788999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCcEEEEecCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--FGDLLRSLDPPSGF  494 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--~g~~~~~l~~~~~~  494 (540)
                      +.|+.|.+||+....           ....+ ....+...++|+++|.+|+.|+..|.|..++.  +..++.++..|.. 
T Consensus       228 G~Dkki~~yD~~s~~-----------s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-  294 (673)
T KOG4378|consen  228 GYDKKINIYDIRSQA-----------STDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-  294 (673)
T ss_pred             cccceEEEeeccccc-----------cccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-
Confidence            999999999987522           22222 24557889999999999999999999999976  5567889988988 


Q ss_pred             CCceEEEEeeCC
Q psy1242         495 ASPESVVMSREG  506 (540)
Q Consensus       495 ~~v~~l~fspdg  506 (540)
                       .|++++|-|.-
T Consensus       295 -sVt~vafq~s~  305 (673)
T KOG4378|consen  295 -SVTRVAFQPSP  305 (673)
T ss_pred             -ceeEEEeeecc
Confidence             78999998765

>KOG2048|consensus

Probab=99.41  E-value=2.4e-11  Score=126.59  Aligned_cols=175  Identities=19%  Similarity=0.220  Sum_probs=127.1

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC  420 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg  420 (540)
                      .++.+|.+. .++.|+.||.+..++...++.....             .+...+++|.+++|+|    ++..|++|+.||
T Consensus       115 siai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r-------------~l~rq~sRvLslsw~~----~~~~i~~Gs~Dg  176 (691)
T KOG2048|consen  115 SIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKR-------------SLMRQKSRVLSLSWNP----TGTKIAGGSIDG  176 (691)
T ss_pred             EEEeCCccc-eEEeecCCceEEEEecCCceEEEEe-------------ecccccceEEEEEecC----CccEEEecccCc
Confidence            344588888 4799999998888888777655332             2245578999999999    999999999999


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCce
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~  498 (540)
                      .|++||....+....-    ...+..+. +-..-|+++.+-.++ .||+|...|+|.+|+. .|.++..+..|..  .|.
T Consensus       177 ~Iriwd~~~~~t~~~~----~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl  249 (691)
T KOG2048|consen  177 VIRIWDVKSGQTLHII----TMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL  249 (691)
T ss_pred             eEEEEEcCCCceEEEe----eecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence            9999998763311000    00001111 123356777777554 7899999999999976 8999999999988  789


Q ss_pred             EEEEeeCCCEEEE-ecCCeEEEEecCCc---EEEeee---cCCcceecC
Q psy1242         499 SVVMSREGVIVVN-YERGHIAAFTMNGN---RLRHES---HNDNLQKTA  540 (540)
Q Consensus       499 ~l~fspdg~~l~s-~~dg~I~lw~~~g~---~l~~~~---~~~~V~~va  540 (540)
                      +++.++++..+++ |-|++|..|..++.   .+....   |...|.+||
T Consensus       250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a  298 (691)
T KOG2048|consen  250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA  298 (691)
T ss_pred             EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence            9999999888777 67999999987754   333222   666676664

>KOG2110|consensus

Probab=99.41  E-value=9.2e-12  Score=121.54  Aligned_cols=156  Identities=18%  Similarity=0.253  Sum_probs=123.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      +.++.++  -++|+++=  ..+|.|||+.+.+.+++++.            ...+...+.+++.++    .+.+|+--+ 
T Consensus        90 IL~VrmN--r~RLvV~L--ee~IyIydI~~MklLhTI~t------------~~~n~~gl~AlS~n~----~n~ylAyp~s  149 (391)
T KOG2110|consen   90 ILAVRMN--RKRLVVCL--EESIYIYDIKDMKLLHTIET------------TPPNPKGLCALSPNN----ANCYLAYPGS  149 (391)
T ss_pred             eEEEEEc--cceEEEEE--cccEEEEecccceeehhhhc------------cCCCccceEeeccCC----CCceEEecCC
Confidence            4555443  44565554  44599999999999988831            123555566666666    677887643 


Q ss_pred             -CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEeC-CCcEEEEecCCCCC
Q psy1242         418 -ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPV-LVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       418 -~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v-~iw~~-~g~~~~~l~~~~~~  494 (540)
                       ..|.|.|||..+           .+++..+..|++.+-|++|+++|.+||++|..|+| ||+.. +|+.+..++....+
T Consensus       150 ~t~GdV~l~d~~n-----------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~  218 (391)
T KOG2110|consen  150 TTSGDVVLFDTIN-----------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP  218 (391)
T ss_pred             CCCceEEEEEccc-----------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee
Confidence             368999999876           56788999999999999999999999999999997 78754 99999999887766


Q ss_pred             CCceEEEEeeCCCEEEE-ecCCeEEEEecCCc
Q psy1242         495 ASPESVVMSREGVIVVN-YERGHIAAFTMNGN  525 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~  525 (540)
                      ..|.+++|+|++++|++ ++.++|++|.++..
T Consensus       219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            78999999999999998 55699999987643

>KOG1007|consensus

Probab=99.41  E-value=7.1e-12  Score=118.55  Aligned_cols=147  Identities=18%  Similarity=0.167  Sum_probs=114.4

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEE
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW  425 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lW  425 (540)
                      .||.. +++. .|++++.||+++.+....++              .+|...|..+.|+|.   ...+|+||+.||.|+||
T Consensus       182 Hdgnq-v~tt-~d~tl~~~D~RT~~~~~sI~--------------dAHgq~vrdlDfNpn---kq~~lvt~gDdgyvriW  242 (370)
T KOG1007|consen  182 HDGNQ-VATT-SDSTLQFWDLRTMKKNNSIE--------------DAHGQRVRDLDFNPN---KQHILVTCGDDGYVRIW  242 (370)
T ss_pred             Cccce-EEEe-CCCcEEEEEccchhhhcchh--------------hhhcceeeeccCCCC---ceEEEEEcCCCccEEEE
Confidence            37775 4554 49999999999888777664              689999999999994   45678999999999999


Q ss_pred             EcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC---CC-------------------
Q psy1242         426 HWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTT---FG-------------------  482 (540)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~---~g-------------------  482 (540)
                      |.+..          ..|++.+.+|..+|.+|.|+|.. ++|++|+.|..|.+|..   ..                   
T Consensus       243 D~R~t----------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse  312 (370)
T KOG1007|consen  243 DTRKT----------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE  312 (370)
T ss_pred             eccCC----------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence            98863          36899999999999999999965 57889999999988732   11                   


Q ss_pred             --------cEEEEecCCCCCCCceEEEEeeCCCEEEE--ecCCeEEEEecC
Q psy1242         483 --------DLLRSLDPPSGFASPESVVMSREGVIVVN--YERGHIAAFTMN  523 (540)
Q Consensus       483 --------~~~~~l~~~~~~~~v~~l~fspdg~~l~s--~~dg~I~lw~~~  523 (540)
                              ..+.++..|++  .|++++||.-...+.+  +-||++.+=.+.
T Consensus       313 er~kpL~dg~l~tydehED--SVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  313 ERVKPLQDGQLETYDEHED--SVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             Hhccccccccccccccccc--ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                    01224455666  7899999987776665  458887765543

>KOG0322|consensus

Probab=99.40  E-value=5.1e-12  Score=118.16  Aligned_cols=166  Identities=17%  Similarity=0.162  Sum_probs=125.0

Q ss_pred             EEEEE--EecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFV--TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~--~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      +.|..  +....+.++++|..+|.|.+||+.++..+..+....     +.+..+..|..+|.++.+.+    .-..=++|
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~-----kv~~~~ash~qpvlsldyas----~~~rGisg  223 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS-----KVESPNASHKQPVLSLDYAS----SCDRGISG  223 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc-----ccccchhhccCcceeeeech----hhcCCcCC
Confidence            45554  333455688899999999999999986555543222     22233367999999999987    34444788


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEEecCCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRSLDPPSGFA  495 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~l~~~~~~~  495 (540)
                      +.+..+..|.++...+..       +....+.-....|..+.+-||++.+|+++.|+.++|+. +++..+..++.|.+  
T Consensus       224 ga~dkl~~~Sl~~s~gsl-------q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--  294 (323)
T KOG0322|consen  224 GADDKLVMYSLNHSTGSL-------QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--  294 (323)
T ss_pred             CccccceeeeeccccCcc-------cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--
Confidence            888899999987543221       11222333345688899999999999999999999974 58999999999997  


Q ss_pred             CceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242         496 SPESVVMSREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s-~~dg~I~lw~~  522 (540)
                      .|.+++|+|+..++|+ +.|++|.+|++
T Consensus       295 gvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  295 GVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceeEEEeCCCCchhhhccCCceEEeeec
Confidence            7899999999999888 46899999985

>KOG1034|consensus

Probab=99.40  E-value=9.6e-12  Score=119.60  Aligned_cols=168  Identities=20%  Similarity=0.190  Sum_probs=118.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ++.+.+.|+...|+.+||.|.+||+|++++..++..+-|            +.||.+.|.++.|++    +|.+|+|++.
T Consensus       138 INeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG------------~egHrdeVLSvD~~~----~gd~i~ScGm  201 (385)
T KOG1034|consen  138 INEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG------------VEGHRDEVLSVDFSL----DGDRIASCGM  201 (385)
T ss_pred             chhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc------------cccccCcEEEEEEcC----CCCeeeccCC
Confidence            455666788877899999999999999999999887722            268999999999999    9999999999


Q ss_pred             CCcEEEEEcCCCcc--cc------cC---------------------------------------CCC------------
Q psy1242         419 DCTVLLWHWNARTQ--SI------VG---------------------------------------ETD------------  439 (540)
Q Consensus       419 DgtV~lWd~~~~~~--~~------~~---------------------------------------~~~------------  439 (540)
                      |.++++|++...+-  ..      ..                                       +..            
T Consensus       202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl  281 (385)
T KOG1034|consen  202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKL  281 (385)
T ss_pred             cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchh
Confidence            99999999873210  00      00                                       000            


Q ss_pred             --------CCc----ceEEeccCCCCEEEE--EEcCCCCEEEEEeCCCcEEEEeCCC-c--EEEEecCCCCCCCceEEEE
Q psy1242         440 --------TPT----PRATLTGHEQPVTSV--AISAELGLVVSGSQLGPVLVHTTFG-D--LLRSLDPPSGFASPESVVM  502 (540)
Q Consensus       440 --------~~~----~~~~l~~h~~~V~~v--~~spdg~~lasgs~Dg~v~iw~~~g-~--~~~~l~~~~~~~~v~~l~f  502 (540)
                              .++    .+..+.-....+.-+  +|.|-++.||.|...|.|.+|+... .  ...++..+.....|...+|
T Consensus       282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf  361 (385)
T KOG1034|consen  282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF  361 (385)
T ss_pred             hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence                    000    001111112233334  4455678899999999999997632 2  2334444444447899999


Q ss_pred             eeCCCEEEE-ecCCeEEEEec
Q psy1242         503 SREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       503 spdg~~l~s-~~dg~I~lw~~  522 (540)
                      |.||.+|+. .+|++|.-||.
T Consensus       362 S~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  362 SRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             cccCcEEEEEeCCCcEEEEEe
Confidence            999998876 78999999984

>KOG1063|consensus

Probab=99.39  E-value=3.8e-12  Score=132.63  Aligned_cols=158  Identities=20%  Similarity=0.132  Sum_probs=119.7

Q ss_pred             EEEEEEecCCCEEEEEEecCC-----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDN-----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dg-----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      +.|++.+|+|+ ++|++....     .|++|+..+-..++.+               .+|+-.|+.++|||    ||++|
T Consensus       528 v~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L---------------~~HsLTVT~l~FSp----dg~~L  587 (764)
T KOG1063|consen  528 VYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQEL---------------EGHSLTVTRLAFSP----DGRYL  587 (764)
T ss_pred             EEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhhee---------------cccceEEEEEEECC----CCcEE
Confidence            67888899999 688887554     4899999877777777               89999999999999    99999


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CC--cEEEEecC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FG--DLLRSLDP  490 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g--~~~~~l~~  490 (540)
                      ++.|+|.++.+|........       .......+.|+..|..+.|+|++.++||+|+|.+|+||-. +.  +.+..+..
T Consensus       588 LsvsRDRt~sl~~~~~~~~~-------e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~  660 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKD-------EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC  660 (764)
T ss_pred             EEeecCceEEeeeeecccch-------hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch
Confidence            99999999999987432110       1113347889999999999999999999999999999954 33  44433222


Q ss_pred             CCCCCCceEEEEeeC-----CCEEEEe-cCCeEEEEecC
Q psy1242         491 PSGFASPESVVMSRE-----GVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       491 ~~~~~~v~~l~fspd-----g~~l~s~-~dg~I~lw~~~  523 (540)
                      ..-...|+++++.|-     +..++.| ..|.|.+|...
T Consensus       661 ~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  661 LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             hccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            211126889988762     3355666 56999999844

>KOG1009|consensus

Probab=99.38  E-value=6.7e-12  Score=123.68  Aligned_cols=122  Identities=25%  Similarity=0.211  Sum_probs=96.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ++++.|+|+|. ++|+|+.+|.|.+|-...-...  .+ ++..+.-.+...+.+.+|...|..++|+|    ++.++++|
T Consensus        68 VN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~----d~~~l~s~  141 (434)
T KOG1009|consen   68 VNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADT-EADLNKEKWVVKKVLRGHRDDIYDLAWSP----DSNFLVSG  141 (434)
T ss_pred             eEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccc-hhhhCccceEEEEEecccccchhhhhccC----CCceeeee
Confidence            78899999999 6899999999999976521110  00 00000111233455678999999999999    99999999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV  477 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i  477 (540)
                      +.|.++++||+..           +.....+.+|...|..++|.|..+++++-+.|...+.
T Consensus       142 s~dns~~l~Dv~~-----------G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~  191 (434)
T KOG1009|consen  142 SVDNSVRLWDVHA-----------GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEG  191 (434)
T ss_pred             eccceEEEEEecc-----------ceeEeeccccccccceeecchhhhhhhhhccCcccce
Confidence            9999999999987           5678899999999999999999999999988885443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=3.9e-11  Score=127.29  Aligned_cols=226  Identities=14%  Similarity=0.025  Sum_probs=137.4

Q ss_pred             cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC--CccccccCCCcC---cceeeEEEEEEEecC
Q psy1242         273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA--PVPKRHLGDNFS---QKLRVRHNCFVTTVD  347 (540)
Q Consensus       273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~--~~~~~~~~~~~~---~~~~v~~~~~~~spd  347 (540)
                      +..+.+||..+........+.+.    .....||+|+..++..+....  ....+.+.....   ........+.+|+||
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~----v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQP----LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCc----cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence            57899999876443333333322    235679999976665432211  111112211100   001112346789999


Q ss_pred             CCEEEEEEecCCcEEEE--EccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-CCCcEEE
Q psy1242         348 SRFLLACGFWDNSFRVF--STDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-ADCTVLL  424 (540)
Q Consensus       348 g~~llasgs~Dgsv~iw--d~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~l  424 (540)
                      |+.|+++.+.+|.+.||  |+.+++. ..+               ..+...+.+.+|+|    ||+.|+.++ .++...|
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~l---------------t~~~~~~~~~~wSp----DG~~i~f~s~~~g~~~I  318 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQL---------------TSGAGNNTEPSWSP----DGQSILFTSDRSGSPQV  318 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-Eee---------------ccCCCCcCCEEECC----CCCEEEEEECCCCCceE
Confidence            99866556678877666  5555543 344               45667788999999    999877655 6889999


Q ss_pred             EEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEee
Q psy1242         425 WHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSR  504 (540)
Q Consensus       425 Wd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fsp  504 (540)
                      |+++....          ....+ ++..  .+++|+|||+.|+.++.++.+.++..+|+........    ....++|+|
T Consensus       319 ~~~~~~~~----------~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~----~~~~~~~sP  381 (429)
T PRK01742        319 YRMSASGG----------GASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF----LDESPSISP  381 (429)
T ss_pred             EEEECCCC----------CeEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC----CCCCceECC
Confidence            98765321          12222 3433  4578999999998888876555444466544322222    235678999


Q ss_pred             CCCEEEEe-cCCeEE---EEecCCcEEEeee-cCCcceec
Q psy1242         505 EGVIVVNY-ERGHIA---AFTMNGNRLRHES-HNDNLQKT  539 (540)
Q Consensus       505 dg~~l~s~-~dg~I~---lw~~~g~~l~~~~-~~~~V~~v  539 (540)
                      +|++|+++ .++.+.   +++.+|+.+..+. +++.+...
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p  421 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP  421 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence            99998874 455544   4456798888775 55655543

>KOG0642|consensus

Probab=99.38  E-value=4.9e-12  Score=129.27  Aligned_cols=188  Identities=20%  Similarity=0.224  Sum_probs=129.6

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      ...++.+... .|++++.||++++|+++....-       +...-+.+.++.+|.++|.|+++.+    .++.+.+|+.|
T Consensus       298 r~l~~~~sep-~lit~sed~~lk~WnLqk~~~s-------~~~~~epi~tfraH~gPVl~v~v~~----n~~~~ysgg~D  365 (577)
T KOG0642|consen  298 RALAFHPSEP-VLITASEDGTLKLWNLQKAKKS-------AEKDVEPILTFRAHEGPVLCVVVPS----NGEHCYSGGID  365 (577)
T ss_pred             hhhhcCCCCC-eEEEeccccchhhhhhcccCCc-------cccceeeeEEEecccCceEEEEecC----CceEEEeeccC
Confidence            3445566666 4799999999999999531100       0001133456699999999999999    99999999999


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCC------
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSG------  493 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~------  493 (540)
                      |+|+.|.+. .....-...+.......+.||++.|+.+++|+....|+++|.||+++.|..++...+++.....      
T Consensus       366 g~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  366 GTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLS  444 (577)
T ss_pred             ceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcce
Confidence            999999765 2222111112223456789999999999999999999999999999999653322222211000      


Q ss_pred             --------------------------------------------CCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEE
Q psy1242         494 --------------------------------------------FASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRL  527 (540)
Q Consensus       494 --------------------------------------------~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l  527 (540)
                                                                  ...+..+.++|.+.+.++ ..++.|+++|.. |+++
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence                                                        012456677777777776 467889999865 7777


Q ss_pred             Eeee-cCCcceecC
Q psy1242         528 RHES-HNDNLQKTA  540 (540)
Q Consensus       528 ~~~~-~~~~V~~va  540 (540)
                      .... |...++++|
T Consensus       525 ~s~~a~~~svtsla  538 (577)
T KOG0642|consen  525 HSMVAHKDSVTSLA  538 (577)
T ss_pred             hheeeccceeccee
Confidence            6664 777777664

>KOG1517|consensus

Probab=99.37  E-value=1.6e-11  Score=133.11  Aligned_cols=164  Identities=18%  Similarity=0.212  Sum_probs=122.8

Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      +.|.....+|+++|. -..|||||+...++...+.              .+-...|++++-+-.   .|+.|+.|-.||.
T Consensus      1171 ~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP--------------~~s~t~vTaLS~~~~---~gn~i~AGfaDGs 1232 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIP--------------YGSSTLVTALSADLV---HGNIIAAGFADGS 1232 (1387)
T ss_pred             eehhhhCCeEEecCC-eeEEEEEecccceeEeecc--------------cCCCccceeeccccc---CCceEEEeecCCc
Confidence            445555555666664 7899999999877777663              234456777765542   5799999999999


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEeccCCCC--EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcE---EEEecCCCCCC
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTGHEQP--VTSVAISAELG-LVVSGSQLGPVLVHTTFGDL---LRSLDPPSGFA  495 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~~v~~spdg~-~lasgs~Dg~v~iw~~~g~~---~~~l~~~~~~~  495 (540)
                      |+++|.+....        ...+.....|...  |..+.+.+.|- .|+|||.||.|.+|+..+..   ..++..|....
T Consensus      1233 vRvyD~R~a~~--------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1233 VRVYDRRMAPP--------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred             eEEeecccCCc--------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence            99999886432        2467788889887  99999999765 59999999999999875522   12222222111


Q ss_pred             -CceEEEEeeCCCEEEEecCCeEEEEecCCcEEEeee
Q psy1242         496 -SPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       496 -~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~~  531 (540)
                       ..+++..+++..++|+|+.+.|++|++.|+.+..+.
T Consensus      1305 s~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k 1341 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK 1341 (1387)
T ss_pred             ccceeeeeccCCCeeeecCcceEEEEecChhhhcccc
Confidence             478999999999999998899999999998887664

>KOG1408|consensus

Probab=99.37  E-value=1e-11  Score=129.49  Aligned_cols=207  Identities=14%  Similarity=0.146  Sum_probs=145.9

Q ss_pred             CCcccccccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCC-cc-cCCCCcCCCCCCCCCcc
Q psy1242         227 PMMFSTVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA-SI-QSPSYAETPGSPPGNLP  304 (540)
Q Consensus       227 p~~f~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~-~~-~~~~~~~~v~~~~~~~~  304 (540)
                      -+.|-+.|+.+++.+.++....              ...+|+++|.|.-|+++|....- .. ..-+|+.++.+    +.
T Consensus       493 ~~~~~eAHesEilcLeyS~p~~--------------~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs----vK  554 (1080)
T KOG1408|consen  493 YTCFMEAHESEILCLEYSFPVL--------------TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS----VK  554 (1080)
T ss_pred             hhhheecccceeEEEeecCchh--------------hhHhhhhccCCceEEEEecccccchhhhhcccccceeE----EE
Confidence            3455566777777777653211              12459999999999999986432 22 23356644432    22


Q ss_pred             ccCCC---CeeeccCCCCCCcc--------ccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE
Q psy1242         305 LTLDP---ILTHPTSNNNAPVP--------KRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ  373 (540)
Q Consensus       305 ~s~D~---~l~~~g~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~  373 (540)
                      |--.+   .++..|. +.....        .+.....-......+.-.+++.|..++ +++++.|..|+||++++|+..+
T Consensus       555 Fa~~gln~~MiscGA-DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-v~t~cQDrnirif~i~sgKq~k  632 (1080)
T KOG1408|consen  555 FACNGLNRKMISCGA-DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-VVTVCQDRNIRIFDIESGKQVK  632 (1080)
T ss_pred             EeecCCceEEEeccC-chhhheehhccccCceeccccccccccceEEEeeeCCCcce-EEEEecccceEEEeccccceee
Confidence            22222   2333331 111110        001100101111223567788899995 7999999999999999999999


Q ss_pred             EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCC
Q psy1242         374 IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQP  453 (540)
Q Consensus       374 ~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~  453 (540)
                      .+++.            .+|.+..-.+...|    .|.+|++.+.|.++.++|...           ++++..+.||...
T Consensus       633 ~FKgs------------~~~eG~lIKv~lDP----SgiY~atScsdktl~~~Df~s-----------gEcvA~m~GHsE~  685 (1080)
T KOG1408|consen  633 SFKGS------------RDHEGDLIKVILDP----SGIYLATSCSDKTLCFVDFVS-----------GECVAQMTGHSEA  685 (1080)
T ss_pred             eeccc------------ccCCCceEEEEECC----CccEEEEeecCCceEEEEecc-----------chhhhhhcCcchh
Confidence            98543            46778888899999    999999999999999999876           6799999999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         454 VTSVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       454 V~~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                      |+.+.|.+|-++|++.+.||.|.||-.
T Consensus       686 VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  686 VTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             eeeeeecccchhheeecCCceEEEEEC
Confidence            999999999999999999999999943

>KOG0649|consensus

Probab=99.35  E-value=1.9e-10  Score=106.65  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=110.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ++++.+.|....+|.+| .|+.+..||+++|+...++               +||++.|.|++-..    ....++||+.
T Consensus       117 INam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~---------------rGHtDYvH~vv~R~----~~~qilsG~E  176 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREY---------------RGHTDYVHSVVGRN----ANGQILSGAE  176 (325)
T ss_pred             cceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEE---------------cCCcceeeeeeecc----cCcceeecCC
Confidence            56676777766555555 6999999999999999888               89999999998744    4557999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEE-eCCCcEEEEecCCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVSGSQLGPVLVH-TTFGDLLRSLDPPSGFAS  496 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs~Dg~v~iw-~~~g~~~~~l~~~~~~~~  496 (540)
                      ||++||||.++.+....-+.  .+....+..| ..+|.|++.+.  .+++.|+ ...+-+| .+..++..++..+.   +
T Consensus       177 DGtvRvWd~kt~k~v~~ie~--yk~~~~lRp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~t~vfpipa---~  248 (325)
T KOG0649|consen  177 DGTVRVWDTKTQKHVSMIEP--YKNPNLLRPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSESTCVFPIPA---R  248 (325)
T ss_pred             CccEEEEeccccceeEEecc--ccChhhcCcccCceeEEEeccC--ceEEecC-CCceeEEeccCCCceEEEeccc---c
Confidence            99999999887432111000  0001111222 23577777654  4676665 4566677 55667777776554   4


Q ss_pred             ceEEEEeeCCCEEEEecCCeEEEEecCCcEEEee
Q psy1242         497 PESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       497 v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~  530 (540)
                      +..+.|-.+ .+|+.|..++|.-|.++|.+-+..
T Consensus       249 v~~v~F~~d-~vl~~G~g~~v~~~~l~Gvl~a~i  281 (325)
T KOG0649|consen  249 VHLVDFVDD-CVLIGGEGNHVQSYTLNGVLQANI  281 (325)
T ss_pred             eeEeeeecc-eEEEeccccceeeeeeccEEEEec
Confidence            677777533 455566678899999998766554

>KOG1007|consensus

Probab=99.35  E-value=3.2e-11  Score=114.13  Aligned_cols=157  Identities=18%  Similarity=0.131  Sum_probs=119.8

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeE-EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI-VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~-~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      .+.|+.|.|++..+ ++- .|+.|.+|+++.+.. +..+.....          .+|....++-+|+|.  .+|+.+++.
T Consensus       125 ~i~cvew~Pns~kl-asm-~dn~i~l~~l~ess~~vaev~ss~s----------~e~~~~ftsg~WspH--Hdgnqv~tt  190 (370)
T KOG1007|consen  125 KINCVEWEPNSDKL-ASM-DDNNIVLWSLDESSKIVAEVLSSES----------AEMRHSFTSGAWSPH--HDGNQVATT  190 (370)
T ss_pred             ceeeEEEcCCCCee-EEe-ccCceEEEEcccCcchheeeccccc----------ccccceecccccCCC--CccceEEEe
Confidence            57999999999985 443 399999999987765 333311110          246778889999993  388888776


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC--CCcEEEEecCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT--FGDLLRSLDPPSG  493 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~--~g~~~~~l~~~~~  493 (540)
                      + |+++..||+++..          +....-.+|...|..+.|+|+-+ +||+|+.||.|+||+.  +...+.++.+|..
T Consensus       191 ~-d~tl~~~D~RT~~----------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  191 S-DSTLQFWDLRTMK----------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             C-CCcEEEEEccchh----------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence            5 8999999998743          22334467889999999999866 6789999999999975  6678999999998


Q ss_pred             CCCceEEEEeeCCC-EEEE-ecCCeEEEEe
Q psy1242         494 FASPESVVMSREGV-IVVN-YERGHIAAFT  521 (540)
Q Consensus       494 ~~~v~~l~fspdg~-~l~s-~~dg~I~lw~  521 (540)
                        -|+++.|+|.-. +|++ |+|..|.+|.
T Consensus       260 --WvW~VRfn~~hdqLiLs~~SDs~V~Lsc  287 (370)
T KOG1007|consen  260 --WVWAVRFNPEHDQLILSGGSDSAVNLSC  287 (370)
T ss_pred             --EEEEEEecCccceEEEecCCCceeEEEe
Confidence              579999998654 4444 6788888884

>KOG4328|consensus

Probab=99.35  E-value=1.3e-11  Score=123.23  Aligned_cols=170  Identities=19%  Similarity=0.143  Sum_probs=121.8

Q ss_pred             EEEEEEEecCCC-EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         338 RHNCFVTTVDSR-FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       338 ~~~~~~~spdg~-~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ++.|++|+|.-. .++|+|..-|.|-+||+.+.+....           -+..+..|.++|++|.|+|.   +-..+++.
T Consensus       188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d-----------~v~~f~~hs~~Vs~l~F~P~---n~s~i~ss  253 (498)
T KOG4328|consen  188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD-----------GVYLFTPHSGPVSGLKFSPA---NTSQIYSS  253 (498)
T ss_pred             ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC-----------ceEEeccCCccccceEecCC---Chhheeee
Confidence            478889999876 7899999999999999963221110           01122789999999999996   67889999


Q ss_pred             eCCCcEEEEEcCCCcccccCCC----------------------------------CCCcceEEeccCCCCEEEEEEcCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGET----------------------------------DTPTPRATLTGHEQPVTSVAISAE  462 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~----------------------------------~~~~~~~~l~~h~~~V~~v~~spd  462 (540)
                      |.||+|++-|+.....+.+...                                  ..+.....+.-|+..|++|+++|-
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence            9999999999875432211000                                  001111223347779999999996


Q ss_pred             CC-EEEEEeCCCcEEEEeC---CCcE--EEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         463 LG-LVVSGSQLGPVLVHTT---FGDL--LRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       463 g~-~lasgs~Dg~v~iw~~---~g~~--~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .. ++||||.|++++|||.   .++.  +.....|..  +|.++.|||+|.-|++ +.|..|+|||..
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr--sV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR--SVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCCcceecccccc--eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            54 7899999999999975   2222  223334555  7899999998776666 789999999973

>KOG0321|consensus

Probab=99.34  E-value=3.1e-11  Score=124.87  Aligned_cols=206  Identities=16%  Similarity=0.199  Sum_probs=136.4

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEEE
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFV  343 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~  343 (540)
                      ..+|+-+..|+.|.+.|...-.                   |.               ...+++..+..|...  +..+.
T Consensus        64 eHiLavadE~G~i~l~dt~~~~-------------------fr---------------~ee~~lk~~~aH~nA--ifDl~  107 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIV-------------------FR---------------LEERQLKKPLAHKNA--IFDLK  107 (720)
T ss_pred             cceEEEecCCCceeeecchhhh-------------------cc---------------hhhhhhcccccccce--eEeec
Confidence            3347888889999888853211                   00               122333333333332  46667


Q ss_pred             EecCCCEEEEEEecCCcEEEEEccCCeEEEE--EecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242         344 TTVDSRFLLACGFWDNSFRVFSTDNARIVQI--IFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       344 ~spdg~~llasgs~Dgsv~iwd~~~g~~~~~--l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      |-| |+.+|++++.|.++++||+..++++..  +               .||.+.|.+++|.|.   +...+++|++||.
T Consensus       108 wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~---------------~GH~~SvkS~cf~~~---n~~vF~tGgRDg~  168 (720)
T KOG0321|consen  108 WAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLN---------------LGHTGSVKSECFMPT---NPAVFCTGGRDGE  168 (720)
T ss_pred             cCC-CceeEEEccCCceeeeeeeccceeecceee---------------cccccccchhhhccC---CCcceeeccCCCc
Confidence            778 777899999999999999998887755  4               799999999999996   7788999999999


Q ss_pred             EEEEEcCCCcccccC---------CCCCCcce-------EEeccCCCCEEE---EEEcCCCCEEEEEeC-CCcEEEEeCC
Q psy1242         422 VLLWHWNARTQSIVG---------ETDTPTPR-------ATLTGHEQPVTS---VAISAELGLVVSGSQ-LGPVLVHTTF  481 (540)
Q Consensus       422 V~lWd~~~~~~~~~~---------~~~~~~~~-------~~l~~h~~~V~~---v~~spdg~~lasgs~-Dg~v~iw~~~  481 (540)
                      |.|||++-.......         .....++.       ..-..|...|.+   +.+..|...||+++. |+.|+|||..
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence            999998753311100         00000111       222345555555   556678888999887 9999999762


Q ss_pred             C-------cEEEEecCCCC---CCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         482 G-------DLLRSLDPPSG---FASPESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       482 g-------~~~~~l~~~~~---~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      .       +.......+..   ...+.+++....|.+|.+ +.|+.|++|++.+
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence            2       12222222211   224567777777887765 6799999998763

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.33  E-value=7e-10  Score=113.82  Aligned_cols=229  Identities=22%  Similarity=0.312  Sum_probs=152.4

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCC--cccCCCCcCCCCCCCCCccc-cCCCC-eeeccCCCCCCccccccCC--CcC
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAA--SIQSPSYAETPGSPPGNLPL-TLDPI-LTHPTSNNNAPVPKRHLGD--NFS  332 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~--~~~~~~~~~~v~~~~~~~~~-s~D~~-l~~~g~~~~~~~~~~~~~~--~~~  332 (540)
                      .+......++.++.|+.+.+|+.....  ......+..   .....+.. ..++. .+...+........+....  ...
T Consensus        72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  148 (466)
T COG2319          72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD---SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI  148 (466)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC---CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE
Confidence            344445557778899999999987653  111112111   11112223 44444 3333222122233333222  000


Q ss_pred             ---cceeeEEEEEEEecCCCEEEEEEec-CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         333 ---QKLRVRHNCFVTTVDSRFLLACGFW-DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       333 ---~~~~v~~~~~~~spdg~~llasgs~-Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                         ....-.+.+++++|+++. +++++. |+.+++|++..++.+..+               .+|...|.+++|+|    
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~----  208 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTL---------------AGHTDPVSSLAFSP----  208 (466)
T ss_pred             EEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEee---------------ccCCCceEEEEEcC----
Confidence               001112557889999995 566664 999999999987887777               77999999999999    


Q ss_pred             CCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceE-EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-Cc-E
Q psy1242         409 ADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRA-TLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GD-L  484 (540)
Q Consensus       409 dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~-~  484 (540)
                      ++. .+++++.|++|++||...           +.... .+.+|...+ ...|++++..+++++.|+.+++|+.. .. .
T Consensus       209 ~~~~~~~~~~~d~~i~~wd~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  276 (466)
T COG2319         209 DGGLLIASGSSDGTIRLWDLST-----------GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL  276 (466)
T ss_pred             CcceEEEEecCCCcEEEEECCC-----------CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE
Confidence            787 555569999999997663           33455 688888875 44899999889999999999999652 22 2


Q ss_pred             EEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         485 LRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      +..+..|..  .+.++.|+|++..+++ +.|+.+.+|+...
T Consensus       277 ~~~~~~~~~--~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~  315 (466)
T COG2319         277 LRTLSGHSS--SVLSVAFSPDGKLLASGSSDGTVRLWDLET  315 (466)
T ss_pred             EEEEecCCc--cEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence            444455655  7899999998888777 4567899998773

>KOG1538|consensus

Probab=99.33  E-value=6.2e-11  Score=122.88  Aligned_cols=184  Identities=14%  Similarity=0.165  Sum_probs=132.7

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeee----------------------eEEEeec--c
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSR----------------------IVQIIFG--H  393 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~----------------------~~~~l~~--h  393 (540)
                      .+.|++++.||+. +|+|+.|..|.+|+.+-...++ . .|.+.|.|-                      ..+....  .
T Consensus        55 tVycVAys~dGkr-FASG~aDK~VI~W~~klEG~Lk-Y-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~ks  131 (1081)
T KOG1538|consen   55 TVYCVAYAKDGKR-FASGSADKSVIIWTSKLEGILK-Y-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKS  131 (1081)
T ss_pred             eEEEEEEccCCce-eccCCCceeEEEecccccceee-e-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhh
Confidence            4899999999995 8999999999999866333222 2 366655440                      0001111  2


Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-----CEEEE
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-----GLVVS  468 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-----~~las  468 (540)
                      ...|.|++|..    ||++++-|-.||||.|-+-...         ....+..--|...+|.+++|+|..     ..++.
T Consensus       132 s~R~~~CsWtn----DGqylalG~~nGTIsiRNk~gE---------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  132 SSRIICCSWTN----DGQYLALGMFNGTISIRNKNGE---------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             heeEEEeeecC----CCcEEEEeccCceEEeecCCCC---------cceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence            34677888988    9999999999999998753321         011222223567899999999964     47888


Q ss_pred             EeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEEeee-cCCcceec
Q psy1242         469 GSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRHES-HNDNLQKT  539 (540)
Q Consensus       469 gs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~~~~-~~~~V~~v  539 (540)
                      .....++-++..+|+.+..-+.-+-  .+.++..-++|.++.. |+|+.+++|+-+|-.|.+.. .+.+|..|
T Consensus       199 ~DW~qTLSFy~LsG~~Igk~r~L~F--dP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV  269 (1081)
T KOG1538|consen  199 ADWGQTLSFYQLSGKQIGKDRALNF--DPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTV  269 (1081)
T ss_pred             EeccceeEEEEecceeecccccCCC--CchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEE
Confidence            8888898888888987764433332  5688999999998887 67899999999998888875 67777655

>KOG1034|consensus

Probab=99.32  E-value=2.8e-11  Score=116.46  Aligned_cols=104  Identities=21%  Similarity=0.198  Sum_probs=92.4

Q ss_pred             CEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcC
Q psy1242         349 RFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN  428 (540)
Q Consensus       349 ~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~  428 (540)
                      .-++|+|+.-|.|+|.|+.++++...+               .+|.+.|+.|.++|.   ..++++++|.|.+||+|+++
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~---------------~ghG~sINeik~~p~---~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNY---------------RGHGGSINEIKFHPD---RPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccce---------------eccCccchhhhcCCC---CCcEEEEecCCceEEEEecc
Confidence            335788888999999999999998888               899999999999995   56899999999999999998


Q ss_pred             CCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy1242         429 ARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF  481 (540)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~  481 (540)
                      +           ..|+..+   .||.+.|.++.|+++|..|+|++.|..+++|...
T Consensus       167 ~-----------~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~  211 (385)
T KOG1034|consen  167 T-----------DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN  211 (385)
T ss_pred             C-----------CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence            7           4566655   6799999999999999999999999999999654

>KOG2445|consensus

Probab=99.31  E-value=1.9e-10  Score=109.89  Aligned_cols=185  Identities=14%  Similarity=0.108  Sum_probs=126.8

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      -+.|+.|.+-|++ +|+|+.|++|+|||.++....-..           ....+.|.+.|..|.|.+.  +=|+.++++|
T Consensus        15 lihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~-----------Ts~Wrah~~Si~rV~WAhP--EfGqvvA~cS   80 (361)
T KOG2445|consen   15 LIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC-----------TSSWRAHDGSIWRVVWAHP--EFGQVVATCS   80 (361)
T ss_pred             eeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE-----------eeeEEecCCcEEEEEecCc--cccceEEEEe
Confidence            3789999999998 699999999999997544322111           2223789999999999651  2589999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeC-C------CcEEEEe
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVLVHTT-F------GDLLRSL  488 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~iw~~-~------g~~~~~l  488 (540)
                      .|+++.||.-...+-+  +.+.......++......|+.|.|.|.  |-.+|+++.||++||+.. +      -.+...+
T Consensus        81 ~Drtv~iWEE~~~~~~--~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   81 YDRTVSIWEEQEKSEE--AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             cCCceeeeeecccccc--cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            9999999985321110  011123345677778889999999995  568899999999999843 1      2233333


Q ss_pred             c-------CCCCCCCceEEEEeeC---CCEEEEecCC------eEEEEecC--C-cEEE--eee-cCCcceecC
Q psy1242         489 D-------PPSGFASPESVVMSRE---GVIVVNYERG------HIAAFTMN--G-NRLR--HES-HNDNLQKTA  540 (540)
Q Consensus       489 ~-------~~~~~~~v~~l~fspd---g~~l~s~~dg------~I~lw~~~--g-~~l~--~~~-~~~~V~~va  540 (540)
                      +       .+..  +-.|+.|+|.   ..+||.|.+.      .+.||..+  | +.++  ++. |.++|++|+
T Consensus       159 ~~~~~pp~~~~~--~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~  230 (361)
T KOG2445|consen  159 QNVIDPPGKNKQ--PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS  230 (361)
T ss_pred             hhccCCcccccC--cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence            3       1122  4568889864   4578887655      78888754  5 3333  332 788887764

>KOG1538|consensus

Probab=99.30  E-value=1.2e-10  Score=120.80  Aligned_cols=239  Identities=11%  Similarity=0.056  Sum_probs=159.4

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC--CCcCCCCCCCCCccccCCCC
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP--SYAETPGSPPGNLPLTLDPI  310 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~--~~~~~v~~~~~~~~~s~D~~  310 (540)
                      .|.+.+..+..+.++.+                 ++|++.|..|.+|++..   .+..  +|.+.+.    +.+|.|-..
T Consensus        51 gHKDtVycVAys~dGkr-----------------FASG~aDK~VI~W~~kl---EG~LkYSH~D~IQ----CMsFNP~~h  106 (1081)
T KOG1538|consen   51 GHKDTVYCVAYAKDGKR-----------------FASGSADKSVIIWTSKL---EGILKYSHNDAIQ----CMSFNPITH  106 (1081)
T ss_pred             cccceEEEEEEccCCce-----------------eccCCCceeEEEecccc---cceeeeccCCeee----EeecCchHH
Confidence            34555566666666555                 99999999999999753   2222  3443332    445555445


Q ss_pred             eeeccCCCCCCccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEe
Q psy1242         311 LTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQII  390 (540)
Q Consensus       311 l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l  390 (540)
                      .+++++-..-......-.....+...++++|++|+.||++ ++.|..+|+|.|-+-. |+....+.-            -
T Consensus       107 ~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~-gEek~~I~R------------p  172 (1081)
T KOG1538|consen  107 QLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQY-LALGMFNGTISIRNKN-GEEKVKIER------------P  172 (1081)
T ss_pred             HhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcE-EEEeccCceEEeecCC-CCcceEEeC------------C
Confidence            5555531111111100111223445677999999999996 7999999999998754 443333310            0


Q ss_pred             eccCcceEEEEeccCcc-CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy1242         391 FGHYGVVTCLSRSECNI-TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       391 ~~h~~~Vt~l~~sp~~~-~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg  469 (540)
                      .|...+|.+++|+|... +....++...+..|+..+.+...            .+..-..-.-.-.|+...++|.+++.|
T Consensus       173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~------------~Igk~r~L~FdP~CisYf~NGEy~LiG  240 (1081)
T KOG1538|consen  173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK------------QIGKDRALNFDPCCISYFTNGEYILLG  240 (1081)
T ss_pred             CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce------------eecccccCCCCchhheeccCCcEEEEc
Confidence            35678999999999311 11246677777777777766531            121112223345689999999999999


Q ss_pred             eCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         470 SQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       470 s~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      +.|+.+.++++.|-.+.++.....  .|+.++..|+++.++.| .||+|..|++-
T Consensus       241 Gsdk~L~~fTR~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  241 GSDKQLSLFTRDGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cCCCceEEEeecCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            999999999999999888877666  57999999999999885 69999888753

>KOG2394|consensus

Probab=99.30  E-value=3e-11  Score=122.84  Aligned_cols=150  Identities=12%  Similarity=0.066  Sum_probs=111.8

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe--EEEEEecccce----e-ee------eeEEEeeccCcceEEEEec
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR--IVQIIFGHYGV----V-TS------RIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~--~~~~l~~~~~~----v-~~------~~~~~l~~h~~~Vt~l~~s  403 (540)
                      -+++|+.|-|.+..++..+.++|.+.++|..--.  .-.....++..    | ++      ..+..+.-.++.|+..+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            3588999989888788899999999999763110  00000000000    0 00      1122223345689999999


Q ss_pred             cCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CC
Q psy1242         404 ECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FG  482 (540)
Q Consensus       404 p~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g  482 (540)
                      |    ||++||+.|.||.+||+|..+           .+.+..++..-+...||+|||||++|++|++|..|.||.. .+
T Consensus       300 ~----DG~~LA~VSqDGfLRvF~fdt-----------~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  300 P----DGKYLATVSQDGFLRIFDFDT-----------QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             C----CCceEEEEecCceEEEeeccH-----------HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence            9    999999999999999999876           2345555666778999999999999999999999999965 78


Q ss_pred             cEEEEecCCCCCCCceEEEEe
Q psy1242         483 DLLRSLDPPSGFASPESVVMS  503 (540)
Q Consensus       483 ~~~~~l~~~~~~~~v~~l~fs  503 (540)
                      +.+..-++|+.|  |..|+|.
T Consensus       365 RVVARGqGHkSW--Vs~VaFD  383 (636)
T KOG2394|consen  365 RVVARGQGHKSW--VSVVAFD  383 (636)
T ss_pred             eEEEeccccccc--eeeEeec
Confidence            889999999994  6888887

>KOG0771|consensus

Probab=99.29  E-value=4.1e-11  Score=118.94  Aligned_cols=162  Identities=19%  Similarity=0.161  Sum_probs=120.6

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      .+++++.+|.. +++|+.||++|||+..+...+...               ..|...|.++.|+|    ||+.|++-+.|
T Consensus       148 k~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e---------------~~~~~eV~DL~FS~----dgk~lasig~d  207 (398)
T KOG0771|consen  148 KVVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILEE---------------IAHHAEVKDLDFSP----DGKFLASIGAD  207 (398)
T ss_pred             eEEEEcCCCCE-eeeccccceEEEEecCcchhhhhh---------------HhhcCccccceeCC----CCcEEEEecCC
Confidence            67888999994 799999999999997666655555               67899999999999    99999999999


Q ss_pred             CcEEEEEcCCCccccc----C------------CC-----------CCCcceEE----e-cc-----------CCCCEEE
Q psy1242         420 CTVLLWHWNARTQSIV----G------------ET-----------DTPTPRAT----L-TG-----------HEQPVTS  456 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~----~------------~~-----------~~~~~~~~----l-~~-----------h~~~V~~  456 (540)
                       ..+||+.+++..-..    .            ..           ..+..+..    + .+           -...|++
T Consensus       208 -~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs  286 (398)
T KOG0771|consen  208 -SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISS  286 (398)
T ss_pred             -ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCccee
Confidence             999999887511000    0            00           00000000    0 00           1236899


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec-CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         457 VAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD-PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       457 v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~-~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      ++++++|+++|.|+.||.|-|.+. +.+.+.-.+ .|..  .|+.+.|+||.+++++ +++.+..+..+..
T Consensus       287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~--~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLG--FVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhhee--eeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999999998765 555555443 4555  7899999999999997 6677777776653

>KOG1273|consensus

Probab=99.29  E-value=8.6e-11  Score=112.50  Aligned_cols=246  Identities=12%  Similarity=0.151  Sum_probs=165.1

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCC-------CCCCccc--cCCCCeeeccCCCCC
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGS-------PPGNLPL--TLDPILTHPTSNNNA  320 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~-------~~~~~~~--s~D~~l~~~g~~~~~  320 (540)
                      .|+-+++....+.++-.|+|+|.|..+++||...+.+..-..+..+|..       .+.++..  ...+.+...+.    
T Consensus        63 aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~----  138 (405)
T KOG1273|consen   63 AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD----  138 (405)
T ss_pred             ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC----
Confidence            4666777778888899999999999999999987775555555544421       1111111  11122221110    


Q ss_pred             CccccccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-CcceEE
Q psy1242         321 PVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-YGVVTC  399 (540)
Q Consensus       321 ~~~~~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-~~~Vt~  399 (540)
                       .....+...-+..+.....|..+.+.|++ |.+|..-|.+.+++..+.+++..+               +-- ...|..
T Consensus       139 -~~h~~Lp~d~d~dln~sas~~~fdr~g~y-IitGtsKGkllv~~a~t~e~vas~---------------rits~~~IK~  201 (405)
T KOG1273|consen  139 -PKHSVLPKDDDGDLNSSASHGVFDRRGKY-IITGTSKGKLLVYDAETLECVASF---------------RITSVQAIKQ  201 (405)
T ss_pred             -CceeeccCCCccccccccccccccCCCCE-EEEecCcceEEEEecchheeeeee---------------eechheeeeE
Confidence             11111222222333444555578899996 688988999999999999988777               222 256888


Q ss_pred             EEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeC-CCcEE
Q psy1242         400 LSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG--HEQPVTSVAISAELGLVVSGSQ-LGPVL  476 (540)
Q Consensus       400 l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~-Dg~v~  476 (540)
                      +.++.    .|+.|+.-+.|..||.++++.-...  +.....++.+.+..  ....-.+++||.+|.+++.|+. ...++
T Consensus       202 I~~s~----~g~~liiNtsDRvIR~ye~~di~~~--~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY  275 (405)
T KOG1273|consen  202 IIVSR----KGRFLIINTSDRVIRTYEISDIDDE--GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY  275 (405)
T ss_pred             EEEec----cCcEEEEecCCceEEEEehhhhccc--CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence            88988    8999999999999999998631110  00001222232222  1224467899999999887764 44578


Q ss_pred             EEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         477 VHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       477 iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      ||-. .|.+++.+.+.++. ....+.|+|-..++++-..|.+++|...
T Consensus       276 IWE~~~GsLVKILhG~kgE-~l~DV~whp~rp~i~si~sg~v~iw~~~  322 (405)
T KOG1273|consen  276 IWEKSIGSLVKILHGTKGE-ELLDVNWHPVRPIIASIASGVVYIWAVV  322 (405)
T ss_pred             EEecCCcceeeeecCCchh-heeecccccceeeeeeccCCceEEEEee
Confidence            9955 89999999988753 3567889999999999888999999854

>KOG1524|consensus

Probab=99.29  E-value=4.2e-11  Score=121.59  Aligned_cols=157  Identities=13%  Similarity=0.093  Sum_probs=116.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.|-.|+|||.- +.+++.||.|++|+-. |-+..++               -....+|.|++|.|    +.+.++-+- 
T Consensus       107 ~~~gRW~~dGtg-Llt~GEDG~iKiWSrs-GMLRStl---------------~Q~~~~v~c~~W~p----~S~~vl~c~-  164 (737)
T KOG1524|consen  107 ISSGRWSPDGAG-LLTAGEDGVIKIWSRS-GMLRSTV---------------VQNEESIRCARWAP----NSNSIVFCQ-  164 (737)
T ss_pred             hhhcccCCCCce-eeeecCCceEEEEecc-chHHHHH---------------hhcCceeEEEEECC----CCCceEEec-
Confidence            566678999997 5777899999999853 5444344               34567899999999    555444332 


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCce
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~  498 (540)
                      .+.+.|=.+..           ...+....+|++-|.|+.|++...+++||+.|-..+||+..|..+.+-..|+.  +|+
T Consensus       165 g~h~~IKpL~~-----------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey--~IT  231 (737)
T KOG1524|consen  165 GGHISIKPLAA-----------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEY--AIT  231 (737)
T ss_pred             CCeEEEeeccc-----------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhcc--cee
Confidence            33455444433           22455678999999999999999999999999999999999999888877877  889


Q ss_pred             EEEEeeCCCEEEEecC----------CeE--EEEecCCcEEEeee
Q psy1242         499 SVVMSREGVIVVNYER----------GHI--AAFTMNGNRLRHES  531 (540)
Q Consensus       499 ~l~fspdg~~l~s~~d----------g~I--~lw~~~g~~l~~~~  531 (540)
                      +++|.|+ ...+.++-          |.|  .-|+++|..++...
T Consensus       232 Sva~npd-~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  232 SVAFNPE-KDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGT  275 (737)
T ss_pred             eeeeccc-cceeeeeeeeeeecCCCccceEEEEEcCCCceeeccc
Confidence            9999999 44444432          333  45778887766554

>KOG1524|consensus

Probab=99.28  E-value=9e-11  Score=119.22  Aligned_cols=178  Identities=19%  Similarity=0.130  Sum_probs=129.4

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      +|-.|...-+..+++..++|++.|+.|++|.-.+..+.                                      .+. 
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS--------------------------------------tl~-  142 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS--------------------------------------TVV-  142 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH--------------------------------------HHh-
Confidence            46666777788889999999999999999985431110                                      000 


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                      .+    .-.+.|++|.|+...++.|.+  +.+.|=.+.-...+...               ++|.+-|.|+.|++    .
T Consensus       143 Q~----~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~W---------------kAHDGiiL~~~W~~----~  197 (737)
T KOG1524|consen  143 QN----EESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRW---------------RAHDGLVLSLSWST----Q  197 (737)
T ss_pred             hc----CceeEEEEECCCCCceEEecC--CeEEEeecccccceeEE---------------eccCcEEEEeecCc----c
Confidence            00    113789999999998777764  44544444433333344               78999999999999    8


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEec
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLD  489 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~  489 (540)
                      .+.|+||+.|...+|||..            +.++..-..|+.+|++++|+|+ ..++.+|.. +++           +.
T Consensus       198 s~lI~sgGED~kfKvWD~~------------G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R-----------~~  252 (737)
T KOG1524|consen  198 SNIIASGGEDFRFKIWDAQ------------GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR-----------FS  252 (737)
T ss_pred             ccceeecCCceeEEeeccc------------CcccccCChhccceeeeeeccc-cceeeeeee-eee-----------ec
Confidence            8999999999999999965            3567777889999999999999 677777642 333           32


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEec-CCeE
Q psy1242         490 PPSGFASPESVVMSREGVIVVNYE-RGHI  517 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~~-dg~I  517 (540)
                      .+... .|..++||+||..+++|. .|.+
T Consensus       253 ~p~~G-SifnlsWS~DGTQ~a~gt~~G~v  280 (737)
T KOG1524|consen  253 SPRVG-SIFNLSWSADGTQATCGTSTGQL  280 (737)
T ss_pred             CCCcc-ceEEEEEcCCCceeeccccCceE
Confidence            22221 689999999999999864 4554

>KOG1587|consensus

Probab=99.28  E-value=3e-10  Score=121.24  Aligned_cols=236  Identities=14%  Similarity=0.043  Sum_probs=155.7

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCc--c-----cCCCCcCCC------CCC--CCCccccCCCCeeeccCCCCCCcccccc
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAAS--I-----QSPSYAETP------GSP--PGNLPLTLDPILTHPTSNNNAPVPKRHL  327 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~--~-----~~~~~~~~v------~~~--~~~~~~s~D~~l~~~g~~~~~~~~~~~~  327 (540)
                      +...+|.|..+|.|-+||...+..  .     ...+|.+.+      .+.  ...++.|.||.+....-+.-.......+
T Consensus       254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~  333 (555)
T KOG1587|consen  254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL  333 (555)
T ss_pred             CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc
Confidence            566788899999999999876553  1     223455554      222  2367778888777542111111111111


Q ss_pred             CCCcCc-----ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEE
Q psy1242         328 GDNFSQ-----KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCL  400 (540)
Q Consensus       328 ~~~~~~-----~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l  400 (540)
                      .....+     ...+.+.+++|.+.....++.|+.+|.|.--+-...+..  ..+++|.         .+..|.+.|.++
T Consensus       334 ~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~---------~~~~h~g~v~~v  404 (555)
T KOG1587|consen  334 LESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS---------TFITHIGPVYAV  404 (555)
T ss_pred             cccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc---------cccccCcceEee
Confidence            111111     223447788888877777899999998877443322221  1222221         225789999999


Q ss_pred             EeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEe
Q psy1242         401 SRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHT  479 (540)
Q Consensus       401 ~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~  479 (540)
                      .++|    =+..++..+.|.+|+||.....          ..|+..+..+...|++++|||-. ..++++..||.+.+||
T Consensus       405 ~~nP----F~~k~fls~gDW~vriWs~~~~----------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  405 SRNP----FYPKNFLSVGDWTVRIWSEDVI----------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             ecCC----CccceeeeeccceeEeccccCC----------CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence            9999    3444444444999999986521          35778888888899999999965 4788899999999997


Q ss_pred             C---CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecC
Q psy1242         480 T---FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  523 (540)
Q Consensus       480 ~---~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~  523 (540)
                      .   +-.++.+.+....  ..+.+.|++.|++|++|+ .|++++|++.
T Consensus       471 Ll~~~~~Pv~s~~~~~~--~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKVCSP--ALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hhccccCCccccccccc--ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            5   3345555554433  567888999999999986 5999999986

>KOG1445|consensus

Probab=99.27  E-value=2e-11  Score=125.78  Aligned_cols=153  Identities=15%  Similarity=0.158  Sum_probs=121.4

Q ss_pred             ecCCCEEEEE--EecCCcEEEEEccCCeEE-----EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         345 TVDSRFLLAC--GFWDNSFRVFSTDNARIV-----QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       345 spdg~~llas--gs~Dgsv~iwd~~~g~~~-----~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.+.++ +|.  .+.-|.|-|++++....+     ..+                -....|+.+.|.|.   |...|+.++
T Consensus       588 can~~r-vAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------------~Ngt~vtDl~WdPF---D~~rLAVa~  647 (1012)
T KOG1445|consen  588 CANNKR-VAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------------FNGTLVTDLHWDPF---DDERLAVAT  647 (1012)
T ss_pred             eeccce-EEEEecCCCceEEEEEcCCCCCCCccccccc----------------ccCceeeecccCCC---ChHHeeecc
Confidence            445554 333  344689999998753221     222                13457999999996   889999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA  495 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~  495 (540)
                      .||.|+||.+......    ....++-..+++|...|+++.|+|- ...|++++.|-+|++|+. +++....+.+|.+  
T Consensus       648 ddg~i~lWr~~a~gl~----e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd--  721 (1012)
T KOG1445|consen  648 DDGQINLWRLTANGLP----ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD--  721 (1012)
T ss_pred             cCceEEEEEeccCCCC----cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC--
Confidence            9999999998653321    1224577889999999999999994 468999999999999976 8888889999999  


Q ss_pred             CceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         496 SPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .|..++|||+|+.+++ +.||+|++|.+.
T Consensus       722 qIf~~AWSpdGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  722 QIFGIAWSPDGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             ceeEEEECCCCcceeeeecCceEEEeCCC
Confidence            8899999999999998 789999999876

>KOG0644|consensus

Probab=99.26  E-value=1e-11  Score=131.68  Aligned_cols=205  Identities=18%  Similarity=0.209  Sum_probs=146.1

Q ss_pred             eeecccceeeecCCcEEEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242         250 CHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  328 (540)
Q Consensus       250 ~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~  328 (540)
                      .|.+|+-...+...+-.++|++.|..|++|...+..+ ....+|++                                  
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~----------------------------------  233 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG----------------------------------  233 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc----------------------------------
Confidence            3666666666777888999999999999999765332 22223331                                  


Q ss_pred             CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         329 DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       329 ~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                             .  +..++++..+. ++|++|.|..|++|.+.++.++..+               .||++.||+|+|+|    
T Consensus       234 -------d--itdlavs~~n~-~iaaaS~D~vIrvWrl~~~~pvsvL---------------rghtgavtaiafsP----  284 (1113)
T KOG0644|consen  234 -------D--ITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAPVSVL---------------RGHTGAVTAIAFSP----  284 (1113)
T ss_pred             -------c--cchhccchhhh-hhhhcccCceEEEEecCCCchHHHH---------------hccccceeeeccCc----
Confidence                   1  23344455555 5899999999999999999999888               89999999999999    


Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCccccc--------------------------C--------------------------
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIV--------------------------G--------------------------  436 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~--------------------------~--------------------------  436 (540)
                          ..+.+.||++++||.+-.....+                          +                          
T Consensus       285 ----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~  360 (1113)
T KOG0644|consen  285 ----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR  360 (1113)
T ss_pred             ----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec
Confidence                23778999999999872111100                          0                          


Q ss_pred             C--------------------CCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         437 E--------------------TDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       437 ~--------------------~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      .                    ...+...+.+.+|...+..+.++|-. +...+++.||...||+. .|..++......+ 
T Consensus       361 ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-  439 (1113)
T KOG0644|consen  361 SSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-  439 (1113)
T ss_pred             cccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-
Confidence            0                    00122234455688888999999855 45568999999999987 6766655443333 


Q ss_pred             CCceEEEEeeCCCEEEEecC-CeEEEEecC
Q psy1242         495 ASPESVVMSREGVIVVNYER-GHIAAFTMN  523 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~d-g~I~lw~~~  523 (540)
                       .+..-+||++|..++..++ |++.+....
T Consensus       440 -kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  440 -KLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             -eeeccccCCCCceEecCCCCCceEEeccC
Confidence             4578899999999888754 788887643

>KOG2111|consensus

Probab=99.23  E-value=9.8e-10  Score=105.65  Aligned_cols=141  Identities=17%  Similarity=0.256  Sum_probs=104.7

Q ss_pred             CCcEEEEEcc-CCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-EeCCCcEEEEEcCCCccccc
Q psy1242         358 DNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-GSADCTVLLWHWNARTQSIV  435 (540)
Q Consensus       358 Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-gs~DgtV~lWd~~~~~~~~~  435 (540)
                      .+.|.||... +.+.+..++...             ....+  ++.+|.  .+...|+. |-.-|.|+|-|+....    
T Consensus       112 ~~~I~VytF~~n~k~l~~~et~~-------------NPkGl--C~~~~~--~~k~~LafPg~k~GqvQi~dL~~~~----  170 (346)
T KOG2111|consen  112 ENKIYVYTFPDNPKLLHVIETRS-------------NPKGL--CSLCPT--SNKSLLAFPGFKTGQVQIVDLASTK----  170 (346)
T ss_pred             cCeEEEEEcCCChhheeeeeccc-------------CCCce--EeecCC--CCceEEEcCCCccceEEEEEhhhcC----
Confidence            7899999987 456666652211             11122  233441  03345554 3457899999987532    


Q ss_pred             CCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEe-CCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec
Q psy1242         436 GETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPV-LVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  513 (540)
Q Consensus       436 ~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v-~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~  513 (540)
                           ..+...+.+|.+.|.|++++.+|.++||+|..||+ |||+ .+|+.+..++.......|++++|||++.+||+++
T Consensus       171 -----~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS  245 (346)
T KOG2111|consen  171 -----PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS  245 (346)
T ss_pred             -----cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence                 11347788999999999999999999999999997 8885 4999999998766655799999999999999865


Q ss_pred             -CCeEEEEecCC
Q psy1242         514 -RGHIAAFTMNG  524 (540)
Q Consensus       514 -dg~I~lw~~~g  524 (540)
                       .|+|++|.+.+
T Consensus       246 dKgTlHiF~l~~  257 (346)
T KOG2111|consen  246 DKGTLHIFSLRD  257 (346)
T ss_pred             CCCeEEEEEeec
Confidence             59999998764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.22  E-value=1.5e-09  Score=111.21  Aligned_cols=232  Identities=10%  Similarity=0.079  Sum_probs=133.0

Q ss_pred             EEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC------CCcCc-ceeeEEE
Q psy1242         268 VTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG------DNFSQ-KLRVRHN  340 (540)
Q Consensus       268 vs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~------~~~~~-~~~v~~~  340 (540)
                      +++..+..|..|+........... ..........+.+++|+..+.+++..........+.      ..... .......
T Consensus        51 v~~~~~~~i~~~~~~~~g~l~~~~-~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~  129 (330)
T PRK11028         51 VGVRPEFRVLSYRIADDGALTFAA-ESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH  129 (330)
T ss_pred             EEECCCCcEEEEEECCCCceEEee-eecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc
Confidence            444557888888875211111000 001111223577888886555443222211111111      00000 0011245


Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-C
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-D  419 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-D  419 (540)
                      +++++|+|++++++...++.|.+||+++...+.....+.        .... .......++|+|    +|++++++.. +
T Consensus       130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~--------~~~~-~g~~p~~~~~~p----dg~~lyv~~~~~  196 (330)
T PRK11028        130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE--------VTTV-EGAGPRHMVFHP----NQQYAYCVNELN  196 (330)
T ss_pred             EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc--------eecC-CCCCCceEEECC----CCCEEEEEecCC
Confidence            677899999988888889999999998643221100000        0001 123456789999    9999988776 9


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccC------CCCEEEEEEcCCCCEEEEEeC-CCcEEEEeC--CCc---EEEE
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGH------EQPVTSVAISAELGLVVSGSQ-LGPVLVHTT--FGD---LLRS  487 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h------~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~--~g~---~~~~  487 (540)
                      ++|.+|+++...+.       .+.+..+..+      ......+.++|++++++++.. ++.|.+|+.  .+.   .+..
T Consensus       197 ~~v~v~~~~~~~~~-------~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~  269 (330)
T PRK11028        197 SSVDVWQLKDPHGE-------IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH  269 (330)
T ss_pred             CEEEEEEEeCCCCC-------EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence            99999999742211       1223333211      123346889999998888754 678888854  332   2333


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~  523 (540)
                      .....   .+..++|+|+|++|+++  .+++|.+|+++
T Consensus       270 ~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        270 QPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             Eeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            33221   45789999999999874  37899999875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.22  E-value=4.2e-10  Score=105.93  Aligned_cols=116  Identities=11%  Similarity=0.096  Sum_probs=90.1

Q ss_pred             EEEEEEecCCCEEEEE-EecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLAC-GFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llas-gs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.+++|+|+|+.++++ |..++.|.+||++ ++.+..+                 +...++.|.|+|    +|++|++|+
T Consensus        62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~-----------------~~~~~n~i~wsP----~G~~l~~~g  119 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF-----------------GTQPRNTISWSP----DGRFLVLAG  119 (194)
T ss_pred             eEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee-----------------cCCCceEEEECC----CCCEEEEEE
Confidence            7899999999975433 5567899999997 6666655                 346778999999    999999987


Q ss_pred             CC---CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCcEEEEe
Q psy1242         418 AD---CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ------LGPVLVHTTFGDLLRSL  488 (540)
Q Consensus       418 ~D---gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~------Dg~v~iw~~~g~~~~~l  488 (540)
                      .+   |.|.+||.+.           .+.+.... | ..++.++|+|+|+++++++.      |..++||..+|+++...
T Consensus       120 ~~n~~G~l~~wd~~~-----------~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~  186 (194)
T PF08662_consen  120 FGNLNGDLEFWDVRK-----------KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK  186 (194)
T ss_pred             ccCCCcEEEEEECCC-----------CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence            54   6799999875           23444432 3 34789999999999998874      67789999999887765


Q ss_pred             c
Q psy1242         489 D  489 (540)
Q Consensus       489 ~  489 (540)
                      .
T Consensus       187 ~  187 (194)
T PF08662_consen  187 P  187 (194)
T ss_pred             c
Confidence            4

>KOG1523|consensus

Probab=99.22  E-value=1.7e-10  Score=110.78  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=123.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.|-+|++|+.. +|.+-..+.|.||.....+.-...            .+++.|...|++|+|+|    ..+.|++|+.
T Consensus        13 itchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~~~------------htls~Hd~~vtgvdWap----~snrIvtcs~   75 (361)
T KOG1523|consen   13 ITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWEPA------------HTLSEHDKIVTGVDWAP----KSNRIVTCSH   75 (361)
T ss_pred             eeeeeecCCCce-EEeccCCceEEEEEecCCCCceec------------eehhhhCcceeEEeecC----CCCceeEccC
Confidence            788899999995 788888899999998766532222            23388999999999999    8999999999


Q ss_pred             CCcEEEEEcC-CCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEE----Eec-CCC
Q psy1242         419 DCTVLLWHWN-ARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLR----SLD-PPS  492 (540)
Q Consensus       419 DgtV~lWd~~-~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~----~l~-~~~  492 (540)
                      |..-.||... .+.         .++...+..+...++||.|+|....+|+||....|-||..+++.-.    .++ .+.
T Consensus        76 drnayVw~~~~~~~---------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir  146 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGT---------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR  146 (361)
T ss_pred             CCCccccccCCCCe---------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence            9999999863 222         4567778889999999999999999999999999988755443221    122 223


Q ss_pred             CCCCceEEEEeeCCCEEEEec-CCeEEEEe
Q psy1242         493 GFASPESVVMSREGVIVVNYE-RGHIAAFT  521 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~-dg~I~lw~  521 (540)
                      .  .|.+++|+|++-.|+.|+ |+..++|+
T Consensus       147 S--tv~sldWhpnnVLlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  147 S--TVTSLDWHPNNVLLAAGSTDGKCRVFS  174 (361)
T ss_pred             c--ceeeeeccCCcceecccccCcceeEEE
Confidence            3  689999999999999865 88888886

>KOG1517|consensus

Probab=99.21  E-value=2.2e-10  Score=124.47  Aligned_cols=149  Identities=19%  Similarity=0.304  Sum_probs=113.0

Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcc--eEEEEeccCccCCCc-EEEEEeCCCcEEE
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGV--VTCLSRSECNITADC-FIASGSADCTVLL  424 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~--Vt~l~~sp~~~~dg~-~l~sgs~DgtV~l  424 (540)
                      |. +|++|..||+||+||.+....-..            +..++.|.+.  |..+.+.+    .|- .|++|+.||.|++
T Consensus      1221 gn-~i~AGfaDGsvRvyD~R~a~~ds~------------v~~~R~h~~~~~Iv~~slq~----~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1221 GN-IIAAGFADGSVRVYDRRMAPPDSL------------VCVYREHNDVEPIVHLSLQR----QGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred             Cc-eEEEeecCCceEEeecccCCcccc------------ceeecccCCcccceeEEeec----CCCcceeeeccCCeEEE
Confidence            45 689999999999999885432111            1223678777  99999988    443 5999999999999


Q ss_pred             EEcCCCcccccCCCCCCcceEEeccC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCC-----CC
Q psy1242         425 WHWNARTQSIVGETDTPTPRATLTGH---EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGF-----AS  496 (540)
Q Consensus       425 Wd~~~~~~~~~~~~~~~~~~~~l~~h---~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~-----~~  496 (540)
                      ||++....         ....++..|   .+.++++.++++...+|+|+. +.|+||+..|+.+..++.+.+.     ..
T Consensus      1284 ~DlR~~~~---------e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1284 LDLRMSSK---------ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred             EecccCcc---------cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCC
Confidence            99987321         112222233   235999999999999999998 9999999999988877754431     15


Q ss_pred             ceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         497 PESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       497 v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      +.+++|+|.--.+|+| .|.+|.+|+..
T Consensus      1354 ~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             cceeeecchhHhhhhccCCceEEEeecC
Confidence            7899999999888886 57899999865

>KOG1188|consensus

Probab=99.19  E-value=1.9e-10  Score=111.40  Aligned_cols=147  Identities=16%  Similarity=0.297  Sum_probs=112.1

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      .+|++...|+|++||..+|+.+..+               +++...++.++|..+.  .+..+.+|+.||+|++||++..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~f---------------k~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~  104 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEF---------------KGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQ  104 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhhee---------------cCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecc
Confidence            4688888999999999999999988               7888888888887631  3467899999999999999874


Q ss_pred             cccccCCCCCCcceEEeccCC-CCEEEEEEcCCCCEEEEEeC----CCcEEEEeC--CCcEEEEe-cCCCCCCCceEEEE
Q psy1242         431 TQSIVGETDTPTPRATLTGHE-QPVTSVAISAELGLVVSGSQ----LGPVLVHTT--FGDLLRSL-DPPSGFASPESVVM  502 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~-~~V~~v~~spdg~~lasgs~----Dg~v~iw~~--~g~~~~~l-~~~~~~~~v~~l~f  502 (540)
                      .         ..+.....+|. .+..|++.+-.++++++|+.    |-.|.+|+.  ..++++.+ ..|.+  .|++++|
T Consensus       105 ~---------e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D--DVT~lrF  173 (376)
T KOG1188|consen  105 A---------ESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND--DVTQLRF  173 (376)
T ss_pred             h---------hhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC--cceeEEe
Confidence            4         23455556665 56778888777888888863    555778976  33435544 45666  7899999


Q ss_pred             eeCC-CEEEEe-cCCeEEEEecCCc
Q psy1242         503 SREG-VIVVNY-ERGHIAAFTMNGN  525 (540)
Q Consensus       503 spdg-~~l~s~-~dg~I~lw~~~g~  525 (540)
                      +|.. ..|++| .||.|.+||+++.
T Consensus       174 HP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  174 HPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cCCCCCeEEeecccceEEeeecCCC
Confidence            9965 577775 5999999998753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=4.3e-09  Score=111.61  Aligned_cols=166  Identities=11%  Similarity=0.027  Sum_probs=109.8

Q ss_pred             EEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...+|+|||+.|+++.+.+|  .|.+||+++++..+..                .+...+...+|+|    ||+.|+..+
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt----------------~~~~~~~~~~wSP----DG~~I~f~s  305 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT----------------DGRSNNTEPTWFP----DSQNLAYTS  305 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc----------------CCCCCcCceEECC----CCCEEEEEe
Confidence            45789999998766655565  4888899877654333                3445678899999    999887776


Q ss_pred             C-CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCcEEEEecCCCC
Q psy1242         418 A-DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL-G--PVLVHTTFGDLLRSLDPPSG  493 (540)
Q Consensus       418 ~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-g--~v~iw~~~g~~~~~l~~~~~  493 (540)
                      . ++...||.++...         + ....+..+.....+.+|+|||+.|+..+.+ +  .|.+|+..+...+.+.... 
T Consensus       306 ~~~g~~~Iy~~d~~~---------g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-  374 (429)
T PRK03629        306 DQAGRPQVYKVNING---------G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-  374 (429)
T ss_pred             CCCCCceEEEEECCC---------C-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-
Confidence            5 4566777554321         1 123344444456678999999998876644 3  3556666433344554322 


Q ss_pred             CCCceEEEEeeCCCEEEEe-cC---CeEEEEecCCcEEEeee-cCCccee
Q psy1242         494 FASPESVVMSREGVIVVNY-ER---GHIAAFTMNGNRLRHES-HNDNLQK  538 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~-~d---g~I~lw~~~g~~l~~~~-~~~~V~~  538 (540)
                        ......|+|||+.|+.+ .+   ..+.+++++|+....+. +++.+..
T Consensus       375 --~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~  422 (429)
T PRK03629        375 --LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKF  422 (429)
T ss_pred             --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCC
Confidence              23567899999988874 33   24788899998877765 5565544

>KOG0290|consensus

Probab=99.19  E-value=4.4e-10  Score=106.65  Aligned_cols=157  Identities=10%  Similarity=0.054  Sum_probs=115.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeE---EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI---VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~---~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+.|.|+.-...+|.+.|-|-+..|||+++|..   ...+               -+|...|..|+|...   .-+.++|
T Consensus       153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL---------------IAHDKEV~DIaf~~~---s~~~FAS  214 (364)
T KOG0290|consen  153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL---------------IAHDKEVYDIAFLKG---SRDVFAS  214 (364)
T ss_pred             ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE---------------EecCcceeEEEeccC---ccceEEE
Confidence            456677766666789999999999999998732   2222               689999999999971   3468899


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCc-EEE-EeC-CCcEEEEecCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGP-VLV-HTT-FGDLLRSLDPP  491 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~-v~i-w~~-~g~~~~~l~~~  491 (540)
                      .|.||+||++|++.....        +.+..-.....+...++|++. -.++|+-..|.. |.| ..+ -+..+..+++|
T Consensus       215 vgaDGSvRmFDLR~leHS--------TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H  286 (364)
T KOG0290|consen  215 VGADGSVRMFDLRSLEHS--------TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH  286 (364)
T ss_pred             ecCCCcEEEEEecccccc--------eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC
Confidence            999999999999864321        111111122456778888874 457777665543 444 444 67789999999


Q ss_pred             CCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecC
Q psy1242         492 SGFASPESVVMSREGV-IVVN-YERGHIAAFTMN  523 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~  523 (540)
                      .+  .|++++|.|... .|++ |+|.++.+||++
T Consensus       287 ~a--~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  287 QA--SVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             cc--cccceEecCCCCceeeecCCcceEEEEecc
Confidence            99  789999999855 5555 778999999987

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=3.7e-09  Score=112.38  Aligned_cols=227  Identities=16%  Similarity=0.105  Sum_probs=132.2

Q ss_pred             ceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC--ccccccCCCcCc---ceeeEEEEEEEecCC
Q psy1242         274 FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP--VPKRHLGDNFSQ---KLRVRHNCFVTTVDS  348 (540)
Q Consensus       274 ~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~--~~~~~~~~~~~~---~~~v~~~~~~~spdg  348 (540)
                      ..+.+||..+........+.+    ......|++|+..++..+.....  .....+......   .......+.+|+|||
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~----~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAE----PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCCCCCceEeecCCC----ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence            468888876443333223332    23356799999765543321111  111111110000   001113467899999


Q ss_pred             CEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-CCCcEEEE
Q psy1242         349 RFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-ADCTVLLW  425 (540)
Q Consensus       349 ~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lW  425 (540)
                      +.++++.+.+|  .|.+||+.+++.. .+               ..+.......+|+|    ||+.|+.++ .++...||
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l---------------t~~~~~~~~~~~sp----DG~~l~f~sd~~g~~~iy  319 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLT-RL---------------TNHFGIDTEPTWAP----DGKSIYFTSDRGGRPQIY  319 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeE-EC---------------ccCCCCccceEECC----CCCEEEEEECCCCCceEE
Confidence            98766766666  4889999877653 34               34555567889999    999888766 45665555


Q ss_pred             EcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCcEEEEecCCCCCCCceEEEE
Q psy1242         426 HWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG---PVLVHTTFGDLLRSLDPPSGFASPESVVM  502 (540)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg---~v~iw~~~g~~~~~l~~~~~~~~v~~l~f  502 (540)
                      .++...         ++ ...+..+......++|+|+|+.|+..+.++   .|.+|+..+...+.+... .  .....+|
T Consensus       320 ~~dl~~---------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~-~--~~~~p~~  386 (433)
T PRK04922        320 RVAASG---------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPG-S--LDESPSF  386 (433)
T ss_pred             EEECCC---------CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCC-C--CCCCceE
Confidence            443211         11 222322333455789999999988766443   467787643333445432 2  2356799


Q ss_pred             eeCCCEEEEec----CCeEEEEecCCcEEEeee-cCCcce
Q psy1242         503 SREGVIVVNYE----RGHIAAFTMNGNRLRHES-HNDNLQ  537 (540)
Q Consensus       503 spdg~~l~s~~----dg~I~lw~~~g~~l~~~~-~~~~V~  537 (540)
                      +|||+.|+...    .+.|.+++++|+....+. +.+.+.
T Consensus       387 spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~  426 (433)
T PRK04922        387 APNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVR  426 (433)
T ss_pred             CCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCC
Confidence            99999887632    356888899987766664 334443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.18  E-value=6.3e-09  Score=106.49  Aligned_cols=234  Identities=13%  Similarity=0.118  Sum_probs=134.7

Q ss_pred             EEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC--CcC--c--ceeeEEE
Q psy1242         267 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD--NFS--Q--KLRVRHN  340 (540)
Q Consensus       267 lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~--~~~--~--~~~v~~~  340 (540)
                      .++...+++|++|+..+.......... ........+.+++|+..+.+++..........+.+  .+.  .  .......
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            455677899999998532211111111 11223346788999876544432222222222211  000  0  0111246


Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-C
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-A  418 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~  418 (540)
                      .++++|+|++++++...++.|.+|++++ +.....+            ..+. +.....+++++|    +|+++++++ .
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~------------~~~~-~~~~~~~~~~~p----~g~~l~v~~~~  146 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI------------QIIE-GLEGCHSANIDP----DNRTLWVPCLK  146 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce------------eecc-CCCcccEeEeCC----CCCEEEEeeCC
Confidence            7889999998777777799999999974 3221111            0002 223466788999    888886554 6


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeC---CCc--EEEEecCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVHTT---FGD--LLRSLDPPS  492 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~---~g~--~~~~l~~~~  492 (540)
                      +++|.+||++.. +.....   ......... ......++|+|+|+++++++. +++|.+|+.   +++  .+..+....
T Consensus       147 ~~~v~v~d~~~~-g~l~~~---~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        147 EDRIRLFTLSDD-GHLVAQ---EPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             CCEEEEEEECCC-Cccccc---CCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            799999998752 110000   000011111 234567899999999888776 899999865   233  233433211


Q ss_pred             ----CCCCceEEEEeeCCCEEEEec--CCeEEEEecC
Q psy1242         493 ----GFASPESVVMSREGVIVVNYE--RGHIAAFTMN  523 (540)
Q Consensus       493 ----~~~~v~~l~fspdg~~l~s~~--dg~I~lw~~~  523 (540)
                          .......++++|+|++++++.  ++.|.+|+++
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~  258 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS  258 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence                100224688999999988863  5789999884

>KOG0649|consensus

Probab=99.17  E-value=2e-09  Score=99.92  Aligned_cols=121  Identities=13%  Similarity=0.090  Sum_probs=90.5

Q ss_pred             ceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy1242         396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPV  475 (540)
Q Consensus       396 ~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v  475 (540)
                      .|+++...|    ..+-+++++.|+.+.-||+.+           ++..+++.||++.|.|+..-.....++||+.||++
T Consensus       116 eINam~ldP----~enSi~~AgGD~~~y~~dlE~-----------G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv  180 (325)
T KOG0649|consen  116 EINAMWLDP----SENSILFAGGDGVIYQVDLED-----------GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV  180 (325)
T ss_pred             ccceeEecc----CCCcEEEecCCeEEEEEEecC-----------CEEEEEEcCCcceeeeeeecccCcceeecCCCccE
Confidence            578888888    566666777899999999887           56788999999999999985555678999999999


Q ss_pred             EEEeC-CCcEEEEecCCCC--CCC----ceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee
Q psy1242         476 LVHTT-FGDLLRSLDPPSG--FAS----PESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       476 ~iw~~-~g~~~~~l~~~~~--~~~----v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      +||+. +++.+..+...+.  +..    -+-.|..-+..+|++|..-.+.+|.+. .+....+.
T Consensus       181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             EEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEe
Confidence            99965 8888887764322  111    112344456779999888889999876 44444333

>KOG2394|consensus

Probab=99.16  E-value=3.3e-10  Score=115.38  Aligned_cols=92  Identities=25%  Similarity=0.409  Sum_probs=80.1

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .++.++|+|||++ ||+.+.||.+||+|..+.+++...               +.--+...|++|||    ||++|++|+
T Consensus       292 ~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~m---------------kSYFGGLLCvcWSP----DGKyIvtGG  351 (636)
T KOG2394|consen  292 SINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVM---------------KSYFGGLLCVCWSP----DGKYIVTGG  351 (636)
T ss_pred             cccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHH---------------HhhccceEEEEEcC----CccEEEecC
Confidence            4678889999997 699999999999999987776555               44557899999999    999999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEc
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAIS  460 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s  460 (540)
                      .|..|.||.+..           .+.+..-.||+.+|..|+|.
T Consensus       352 EDDLVtVwSf~e-----------rRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  352 EDDLVTVWSFEE-----------RRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             CcceEEEEEecc-----------ceEEEeccccccceeeEeec
Confidence            999999999875           45677778999999999998

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=7.9e-09  Score=109.96  Aligned_cols=220  Identities=11%  Similarity=-0.024  Sum_probs=131.7

Q ss_pred             ceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCC--CCccccccCCCcCc---ceeeEEEEEEEecCC
Q psy1242         274 FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN--APVPKRHLGDNFSQ---KLRVRHNCFVTTVDS  348 (540)
Q Consensus       274 ~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~--~~~~~~~~~~~~~~---~~~v~~~~~~~spdg  348 (540)
                      ..|.+||..+........+.+.    .....|++||..++..+...  .....+.+......   .......+.+|+|||
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~----v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSL----VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCC----eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence            4677777755433333333322    23567899997555432111  11111111111000   011124567899999


Q ss_pred             CEEEEEEecCCc--EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-CC--cEE
Q psy1242         349 RFLLACGFWDNS--FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-DC--TVL  423 (540)
Q Consensus       349 ~~llasgs~Dgs--v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-Dg--tV~  423 (540)
                      +.|+++.+.++.  |.+||+.+++.. .+               ..+....+..+|+|    ||+.|+..+. ++  .|.
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~L---------------t~~~~~~~~~~~sp----DG~~i~f~s~~~g~~~Iy  317 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTT-RL---------------TDSPAIDTSPSYSP----DGSQIVFESDRSGSPQLY  317 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceE-Ec---------------cCCCCccCceeEcC----CCCEEEEEECCCCCCeEE
Confidence            987777777776  666688776643 34               45556677899999    9998887763 44  466


Q ss_pred             EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCcEEEEecCCCCCCCceEE
Q psy1242         424 LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG---PVLVHTTFGDLLRSLDPPSGFASPESV  500 (540)
Q Consensus       424 lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg---~v~iw~~~g~~~~~l~~~~~~~~v~~l  500 (540)
                      +||+...            ....+..+...+....|+|+|+.|+..+.++   .|.+++.++...+.+... .  .+...
T Consensus       318 ~~d~~g~------------~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~-~--~~~~p  382 (435)
T PRK05137        318 VMNADGS------------NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG-F--LVEGP  382 (435)
T ss_pred             EEECCCC------------CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC-C--CCCCC
Confidence            6665431            2334444455567789999999998876543   355566655555555432 2  35788


Q ss_pred             EEeeCCCEEEEe-c-C-----CeEEEEecCCcEEEeeec
Q psy1242         501 VMSREGVIVVNY-E-R-----GHIAAFTMNGNRLRHESH  532 (540)
Q Consensus       501 ~fspdg~~l~s~-~-d-----g~I~lw~~~g~~l~~~~~  532 (540)
                      .|+|||+.|+.. . .     ..|.+++++|+....+..
T Consensus       383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~  421 (435)
T PRK05137        383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT  421 (435)
T ss_pred             eECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence            999999988763 2 1     368888988766665543

>KOG1188|consensus

Probab=99.14  E-value=9e-10  Score=106.76  Aligned_cols=149  Identities=20%  Similarity=0.221  Sum_probs=109.0

Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCCcEEEEEeC----CCcE
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITADCFIASGSA----DCTV  422 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg~~l~sgs~----DgtV  422 (540)
                      +...+.+|+.||+|++||+++......+.             +.+|. .+-.|++..-    .++.+++|..    |-.|
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-------------~~~~~~~~f~~ld~nc----k~~ii~~GtE~~~s~A~v  145 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAESARIS-------------WTQQSGTPFICLDLNC----KKNIIACGTELTRSDASV  145 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchhhhhee-------------ccCCCCCcceEeeccC----cCCeEEeccccccCceEE
Confidence            44457889999999999999766544331             14454 4567777764    5677777753    7789


Q ss_pred             EEEEcCCCcccccCCCCCCcceEE-eccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCc-----EEEEecCCCCCC
Q psy1242         423 LLWHWNARTQSIVGETDTPTPRAT-LTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTTFGD-----LLRSLDPPSGFA  495 (540)
Q Consensus       423 ~lWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~~g~-----~~~~l~~~~~~~  495 (540)
                      .+||++..+          +++.. ...|.+.|++++|+|. -.+|+|||-||.|.|++.++.     ++.++. +..  
T Consensus       146 ~lwDvR~~q----------q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~s--  212 (376)
T KOG1188|consen  146 VLWDVRSEQ----------QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGS--  212 (376)
T ss_pred             EEEEecccc----------chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccc--
Confidence            999998754          22333 3679999999999995 469999999999999876443     333443 333  


Q ss_pred             CceEEEEeeCC--CEEEEecCCeEEEEecC-CcE
Q psy1242         496 SPESVVMSREG--VIVVNYERGHIAAFTMN-GNR  526 (540)
Q Consensus       496 ~v~~l~fspdg--~~l~s~~dg~I~lw~~~-g~~  526 (540)
                      .|.++.|..++  ++.+........+|+++ |..
T Consensus       213 SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  213 SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             eeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            58999999988  66666778899999987 553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.3e-09  Score=115.70  Aligned_cols=209  Identities=11%  Similarity=-0.029  Sum_probs=126.7

Q ss_pred             cceeeecCCcEEEEEccC---cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccC-CCCCCc-cccccCC
Q psy1242         255 NTYVTLHMPSVVTVTANH---QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTS-NNNAPV-PKRHLGD  329 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~---D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~-~~~~~~-~~~~~~~  329 (540)
                      ...+.+.+++-.++..+.   +..|.+||..++.........+    ......|++||..++.+. ...... -...+..
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~  281 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG  281 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC----ccCceeECCCCCEEEEEEecCCcEEEEEEECCC
Confidence            445566666666666553   3579999987654322222211    122467999997555432 121110 0011110


Q ss_pred             CcCc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC-eEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242         330 NFSQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA-RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC  405 (540)
Q Consensus       330 ~~~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g-~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~  405 (540)
                      ....   .........+|+|||+.|++++..++..+||+++.. .....+                ++.+  .+.+|+| 
T Consensus       282 ~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----------------~~~~--~~~~~Sp-  342 (429)
T PRK01742        282 GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----------------GGRG--YSAQISA-  342 (429)
T ss_pred             CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----------------cCCC--CCccCCC-
Confidence            0000   001124567899999987666667888999987542 222222                2333  4578999 


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE---eCCC
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH---TTFG  482 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw---~~~g  482 (540)
                         ||++|+.++.++. .+||+.++.           .. .+..+ .....++|+|+|++|++++.+|.+.+|   +.+|
T Consensus       343 ---DG~~ia~~~~~~i-~~~Dl~~g~-----------~~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G  405 (429)
T PRK01742        343 ---DGKTLVMINGDNV-VKQDLTSGS-----------TE-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG  405 (429)
T ss_pred             ---CCCEEEEEcCCCE-EEEECCCCC-----------eE-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence               9999988887654 458876532           11 22111 123467899999999999999888665   4589


Q ss_pred             cEEEEecCCCCCCCceEEEEeeC
Q psy1242         483 DLLRSLDPPSGFASPESVVMSRE  505 (540)
Q Consensus       483 ~~~~~l~~~~~~~~v~~l~fspd  505 (540)
                      +.++.+..+.+  .+...+|+|-
T Consensus       406 ~~~~~l~~~~g--~~~~p~wsp~  426 (429)
T PRK01742        406 RFKARLPGSDG--QVKFPAWSPY  426 (429)
T ss_pred             CceEEccCCCC--CCCCcccCCC
Confidence            99999987776  5688899874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.1e-08  Score=108.65  Aligned_cols=227  Identities=15%  Similarity=0.076  Sum_probs=130.9

Q ss_pred             cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC--CccccccCCCcCc---ceeeEEEEEEEecC
Q psy1242         273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA--PVPKRHLGDNFSQ---KLRVRHNCFVTTVD  347 (540)
Q Consensus       273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~--~~~~~~~~~~~~~---~~~v~~~~~~~spd  347 (540)
                      ...+.+||..+........+.+.    .....|++|+..++..+....  ......+......   .......+.+|+||
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~~~----v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPD  250 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSPEP----IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPD  250 (427)
T ss_pred             ccEEEEECCCCCCceEeccCCCC----cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCC
Confidence            44566677644332332333322    235679999976654332111  1111122111000   01112356789999


Q ss_pred             CCEEEEEEecCCcEEEEEc--cCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-CCCcEEE
Q psy1242         348 SRFLLACGFWDNSFRVFST--DNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-ADCTVLL  424 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~--~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~l  424 (540)
                      |+.|+++.+.+|...||.+  .++. ...+               ..+.+.++..+|+|    ||+.|+..+ .++...|
T Consensus       251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~l---------------t~~~~~~~~~~wSp----DG~~l~f~s~~~g~~~I  310 (427)
T PRK02889        251 GRTLAVALSRDGNSQIYTVNADGSG-LRRL---------------TQSSGIDTEPFFSP----DGRSIYFTSDRGGAPQI  310 (427)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC-cEEC---------------CCCCCCCcCeEEcC----CCCEEEEEecCCCCcEE
Confidence            9987667778888777754  3333 3444               44555667789999    999887665 4578888


Q ss_pred             EEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCcEEEEecCCCCCCCceEEE
Q psy1242         425 WHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG---PVLVHTTFGDLLRSLDPPSGFASPESVV  501 (540)
Q Consensus       425 Wd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg---~v~iw~~~g~~~~~l~~~~~~~~v~~l~  501 (540)
                      |.++....         . ...+..+.......+|||+|+.|+..+.++   .|.+|+..+...+.+... .  .....+
T Consensus       311 y~~~~~~g---------~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~  377 (427)
T PRK02889        311 YRMPASGG---------A-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-T--RDESPS  377 (427)
T ss_pred             EEEECCCC---------c-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-C--CccCce
Confidence            87653221         1 122222223344678999999998877654   477787643334444432 2  236789


Q ss_pred             EeeCCCEEEEec--C--CeEEEEecCCcEEEeee-cCCcc
Q psy1242         502 MSREGVIVVNYE--R--GHIAAFTMNGNRLRHES-HNDNL  536 (540)
Q Consensus       502 fspdg~~l~s~~--d--g~I~lw~~~g~~l~~~~-~~~~V  536 (540)
                      |+|||+.|+...  .  ..+.+.+++|+....+. +.+.+
T Consensus       378 ~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~  417 (427)
T PRK02889        378 FAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDV  417 (427)
T ss_pred             ECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCC
Confidence            999999988743  2  34677778887666554 33444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.13  E-value=7e-09  Score=106.37  Aligned_cols=168  Identities=28%  Similarity=0.455  Sum_probs=128.0

Q ss_pred             EEEEEEEecCCCEEEEE-EecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         338 RHNCFVTTVDSRFLLAC-GFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       338 ~~~~~~~spdg~~llas-gs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      ...++. ++++..+++. +..|+.+++|+... ......+               .+|...|.+++|+|    ++..+++
T Consensus       113 ~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~----~~~~~~~  172 (466)
T COG2319         113 SKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL---------------EGHSESVTSLAFSP----DGKLLAS  172 (466)
T ss_pred             eeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEE---------------ecCcccEEEEEECC----CCCEEEe
Confidence            344444 7788733444 44599999999987 6666666               78999999999999    8888888


Q ss_pred             EeC-CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-CCcEEE-EecCC
Q psy1242         416 GSA-DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT-FGDLLR-SLDPP  491 (540)
Q Consensus       416 gs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~-~g~~~~-~l~~~  491 (540)
                      ++. |+.+++|+...           ...+..+.+|...|.+++|+|++. .+++++.|+.+++|+. .+..+. .+..|
T Consensus       173 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         173 GSSLDGTIKLWDLRT-----------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             cCCCCCceEEEEcCC-----------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence            885 99999999875           356778888999999999999998 6666699999999965 567777 67777


Q ss_pred             CCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC-cE-EEee-ecCCcceec
Q psy1242         492 SGFASPESVVMSREGVIVVN-YERGHIAAFTMNG-NR-LRHE-SHNDNLQKT  539 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g-~~-l~~~-~~~~~V~~v  539 (540)
                      ..  .. ...|++++..+++ +.++.+++|+... .. +... .|...|.++
T Consensus       242 ~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~  290 (466)
T COG2319         242 SD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV  290 (466)
T ss_pred             Cc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE
Confidence            76  32 2289999977775 6689999999872 22 3333 356666554

>KOG0650|consensus

Probab=99.12  E-value=7.5e-10  Score=114.03  Aligned_cols=183  Identities=15%  Similarity=0.177  Sum_probs=133.1

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee---------------------------------
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS---------------------------------  384 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~---------------------------------  384 (540)
                      .+.|+.+.|.|.+ ||+|+.||+||||.+.+|+++.++.-.. .|.+                                 
T Consensus       402 ~Vr~iSvdp~G~w-lasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~  479 (733)
T KOG0650|consen  402 LVRSISVDPSGEW-LASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEV  479 (733)
T ss_pred             eEEEEEecCCcce-eeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCceEEeCccccchhhh
Confidence            4788999999996 7999999999999999999987763211 1110                                 


Q ss_pred             --------------------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC---CcEEEEEcCC
Q psy1242         385 --------------------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD---CTVLLWHWNA  429 (540)
Q Consensus       385 --------------------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D---gtV~lWd~~~  429 (540)
                                                      .-+...-.|...|+.|.|+.    .|.+|+|...+   ..|.|.++..
T Consensus       480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr----kGDYlatV~~~~~~~~VliHQLSK  555 (733)
T KOG0650|consen  480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR----KGDYLATVMPDSGNKSVLIHQLSK  555 (733)
T ss_pred             cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec----CCceEEEeccCCCcceEEEEeccc
Confidence                                            01122234778899999999    99999997764   4788888765


Q ss_pred             CcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCE
Q psy1242         430 RTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVI  508 (540)
Q Consensus       430 ~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~  508 (540)
                      ..           ....|....+.|.++.|+|...+++.++. ..|+|++. .+.+++.+.....  .|..++++|.|.-
T Consensus       556 ~~-----------sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k--wiS~msihp~GDn  621 (733)
T KOG0650|consen  556 RK-----------SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK--WISSMSIHPNGDN  621 (733)
T ss_pred             cc-----------ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe--eeeeeeecCCCCe
Confidence            32           12233345567899999999988888874 57899866 6666666665555  5799999999987


Q ss_pred             EEEe-cCCeEEEEecC--CcEEEeee-cCCcceecC
Q psy1242         509 VVNY-ERGHIAAFTMN--GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       509 l~s~-~dg~I~lw~~~--g~~l~~~~-~~~~V~~va  540 (540)
                      |+.| -|+.++.||++  .+...++. |...|++||
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va  657 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA  657 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhh
Confidence            7765 58999999987  45555554 666666554

>KOG1523|consensus

Probab=99.10  E-value=1.6e-09  Score=104.28  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=121.9

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEc-cCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFST-DNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~-~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      .++++.|+|...+ |++++.|..-.+|.. ..++-..++             .|..+...++||.|+|    .++.+++|
T Consensus        57 ~vtgvdWap~snr-Ivtcs~drnayVw~~~~~~~Wkptl-------------vLlRiNrAAt~V~WsP----~enkFAVg  118 (361)
T KOG1523|consen   57 IVTGVDWAPKSNR-IVTCSHDRNAYVWTQPSGGTWKPTL-------------VLLRINRAATCVKWSP----KENKFAVG  118 (361)
T ss_pred             ceeEEeecCCCCc-eeEccCCCCccccccCCCCeeccce-------------eEEEeccceeeEeecC----cCceEEec
Confidence            3667888999987 699999999999998 444433333             2267889999999999    89999999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-----C----------
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-----F----------  481 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-----~----------  481 (540)
                      |....|.||-+.....-.+       ..++-..+.+.|++++|+|++-++++||.|+.++|+..     +          
T Consensus       119 Sgar~isVcy~E~ENdWWV-------sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgs  191 (361)
T KOG1523|consen  119 SGARLISVCYYEQENDWWV-------SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGS  191 (361)
T ss_pred             cCccEEEEEEEecccceeh-------hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCcc
Confidence            9999999998765332111       12233456788999999999999999999999998631     1          


Q ss_pred             ----CcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCc
Q psy1242         482 ----GDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGN  525 (540)
Q Consensus       482 ----g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~  525 (540)
                          |+++..+....+  -+..+.|+|+|..|+- +.|+.+.+-|..|.
T Consensus       192 k~PFG~lm~E~~~~gg--wvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  192 KMPFGQLMSEASSSGG--WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             CCcHHHHHHhhccCCC--ceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence                233334433334  5799999999999986 77899988887654

>KOG0974|consensus

Probab=99.09  E-value=9.4e-10  Score=119.99  Aligned_cols=152  Identities=20%  Similarity=0.214  Sum_probs=125.4

Q ss_pred             EecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEE
Q psy1242         344 TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVL  423 (540)
Q Consensus       344 ~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~  423 (540)
                      .+++-- .+++|+--+.|.+|+..--+.-..+               .||.+.+..+.++.    ||.+++|.|.|.++|
T Consensus       141 ~s~~~~-~i~~gsv~~~iivW~~~~dn~p~~l---------------~GHeG~iF~i~~s~----dg~~i~s~SdDRsiR  200 (967)
T KOG0974|consen  141 DSAEEL-YIASGSVFGEIIVWKPHEDNKPIRL---------------KGHEGSIFSIVTSL----DGRYIASVSDDRSIR  200 (967)
T ss_pred             ccCcEE-EEEeccccccEEEEeccccCCccee---------------cccCCceEEEEEcc----CCcEEEEEecCccee
Confidence            344444 4799999999999997621111124               79999999999999    999999999999999


Q ss_pred             EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEe
Q psy1242         424 LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMS  503 (540)
Q Consensus       424 lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fs  503 (540)
                      +|++.+..          ....+..+|...|..+++.|.  .++|++.|.++++|...+..+..+..|.+. .++.++..
T Consensus       201 lW~i~s~~----------~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~-~iw~~~~~  267 (967)
T KOG0974|consen  201 LWPIDSRE----------VLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGK-GIWKIAVP  267 (967)
T ss_pred             eeeccccc----------ccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhc-ceeEEEEc
Confidence            99998743          122467899999999999998  899999999999998899888888888765 58999999


Q ss_pred             eCCCEEEE-ecCCeEEEEecCCcEEE
Q psy1242         504 REGVIVVN-YERGHIAAFTMNGNRLR  528 (540)
Q Consensus       504 pdg~~l~s-~~dg~I~lw~~~g~~l~  528 (540)
                      ++..++++ |.|+.+++|+..++.+.
T Consensus       268 ~~~~~~vT~g~Ds~lk~~~l~~r~~e  293 (967)
T KOG0974|consen  268 IGVIIKVTGGNDSTLKLWDLNGRGLE  293 (967)
T ss_pred             CCceEEEeeccCcchhhhhhhccccc
Confidence            88888887 67899999998866543

>KOG0307|consensus

Probab=99.09  E-value=9.3e-10  Score=121.15  Aligned_cols=187  Identities=14%  Similarity=0.108  Sum_probs=128.5

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccC-CCCeeeccCCCCC-----CccccccCCCcCcceee
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTL-DPILTHPTSNNNA-----PVPKRHLGDNFSQKLRV  337 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~-----~~~~~~~~~~~~~~~~v  337 (540)
                      ..++++|+.|+.|.+||+.........+ +-...+...+++|.. ...++++++....     ....+.+...-+...+.
T Consensus       129 ~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  129 GNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             CceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence            4469999999999999997644333222 100122222344432 1233333322211     11222233333444445


Q ss_pred             EEEEEEEecCCCEEEEEEecCC---cEEEEEccCCe-EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDN---SFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dg---sv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      .+..++|+|++..-+++++.|.   .|.+||++... .++.+               ++|+..|.+++|++.   |.++|
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~---------------~~H~~GilslsWc~~---D~~ll  269 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL---------------EGHQRGILSLSWCPQ---DPRLL  269 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh---------------cccccceeeeccCCC---Cchhh
Confidence            6888999999876667776654   58999987543 44555               799999999999994   66999


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT  480 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~  480 (540)
                      +|++.|+.|.+|+.++           ++.+..+....+++..+.|+|... .++.++-||.|-|+..
T Consensus       270 lSsgkD~~ii~wN~~t-----------gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  270 LSSGKDNRIICWNPNT-----------GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             hcccCCCCeeEecCCC-----------ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence            9999999999999876           567788888889999999999765 8888999999999854

>KOG1334|consensus

Probab=99.09  E-value=1.7e-09  Score=109.18  Aligned_cols=258  Identities=8%  Similarity=0.014  Sum_probs=164.4

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCc--ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC--CCcC--
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAAS--IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--DNFS--  332 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~--~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~--~~~~--  332 (540)
                      .+...+-+++|+|.|..|.+||......  ..-.+|...|.... .++++.|.++...+. ++.+ ....+.  +...  
T Consensus       149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaK-FiP~s~d~ti~~~s~-dgqv-r~s~i~~t~~~e~t  225 (559)
T KOG1334|consen  149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAK-FIPFSGDRTIVTSSR-DGQV-RVSEILETGYVENT  225 (559)
T ss_pred             eecccCceeeccCccceEEeehhhccCcccccccccccchhhhh-ccCCCCCcCceeccc-cCce-eeeeeccccceecc
Confidence            3344455699999999999999876542  23345665554322 677777777765442 1111 111111  1111  


Q ss_pred             ---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc---ceEEEEeccCc
Q psy1242         333 ---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG---VVTCLSRSECN  406 (540)
Q Consensus       333 ---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~---~Vt~l~~sp~~  406 (540)
                         ......+..+++-|+..+-|.+++.|+.+.-.|++.+.....+.            .-..+..   ....++..|. 
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~------------cr~~~~~~~v~L~~Ia~~P~-  292 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV------------CREADEKERVGLYTIAVDPR-  292 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee------------eeccCCccceeeeeEecCCC-
Confidence               11122366677788888778899999999999998776554441            0023333   4678889983 


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT------GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                        ....+++|+.|--++++|.+......     ...++..+.      ...-.|+|++++.++.-+.++-.|-.|+++..
T Consensus       293 --nt~~faVgG~dqf~RvYD~R~~~~e~-----~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~  365 (559)
T KOG1334|consen  293 --NTNEFAVGGSDQFARVYDQRRIDKEE-----NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK  365 (559)
T ss_pred             --CccccccCChhhhhhhhcccchhhcc-----ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence              44589999999999999976533211     011222222      22346899999987776666666777877732


Q ss_pred             ---CC----------cEEEE-ecCCCCCCCceEEEE-eeCCCEEEEecC-CeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         481 ---FG----------DLLRS-LDPPSGFASPESVVM-SREGVIVVNYER-GHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       481 ---~g----------~~~~~-l~~~~~~~~v~~l~f-spdg~~l~s~~d-g~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                         .|          ..+.. .++|..+-.|..+-| .|...++++|+| |.|.+|+-. |++|.-++ ...-|+||
T Consensus       366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL  442 (559)
T KOG1334|consen  366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL  442 (559)
T ss_pred             ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence               34          33333 788877667888876 688999999876 999999988 55555444 33366776

>KOG0290|consensus

Probab=99.07  E-value=4.5e-09  Score=99.91  Aligned_cols=188  Identities=16%  Similarity=0.076  Sum_probs=132.0

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  342 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  342 (540)
                      +...+.|+|-|.|-.+||...+..                  ..                .+.|+..+-.   +  +..+
T Consensus       162 dp~~igtSSiDTTCTiWdie~~~~------------------~~----------------vkTQLIAHDK---E--V~DI  202 (364)
T KOG0290|consen  162 DPNLIGTSSIDTTCTIWDIETGVS------------------GT----------------VKTQLIAHDK---E--VYDI  202 (364)
T ss_pred             CcceeEeecccCeEEEEEEeeccc------------------cc----------------eeeEEEecCc---c--eeEE
Confidence            566788999999999999865310                  00                1111211111   1  5677


Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEE-ecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC-C
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQII-FGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD-C  420 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l-~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D-g  420 (540)
                      +|...+..++|+.+.||+||++|++..+.-..+ +.             ..-..+...++|++.   |-++++|-..| .
T Consensus       203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~-------------p~~~~pLlRLswnkq---DpnymATf~~dS~  266 (364)
T KOG0290|consen  203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED-------------PSPSTPLLRLSWNKQ---DPNYMATFAMDSN  266 (364)
T ss_pred             EeccCccceEEEecCCCcEEEEEecccccceEEecC-------------CCCCCcceeeccCcC---CchHHhhhhcCCc
Confidence            888888889999999999999999876543332 10             122457888999985   77888886654 5


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCcEE-------EEecCCC
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTTFGDLL-------RSLDPPS  492 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~~g~~~-------~~l~~~~  492 (540)
                      .|.|.|++..          ..++..+.+|.+.|++|+|.|.. ..|+||+.|..+.+|+......       .... .+
T Consensus       267 ~V~iLDiR~P----------~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~  335 (364)
T KOG0290|consen  267 KVVILDIRVP----------CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AG  335 (364)
T ss_pred             eEEEEEecCC----------CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-cc
Confidence            7899999863          36889999999999999999964 5899999999999997633221       1111 12


Q ss_pred             CCCCceEEEEee-CCCEEEEecCCeEE
Q psy1242         493 GFASPESVVMSR-EGVIVVNYERGHIA  518 (540)
Q Consensus       493 ~~~~v~~l~fsp-dg~~l~s~~dg~I~  518 (540)
                      +  .|..+.|++ .+..++...+.++.
T Consensus       336 ~--EVNqi~Ws~~~~Dwiai~~~kkle  360 (364)
T KOG0290|consen  336 G--EVNQIQWSSSQPDWIAICFGKKLE  360 (364)
T ss_pred             c--eeeeeeecccCCCEEEEEecCeee
Confidence            2  689999985 46677776555443

>KOG2321|consensus

Probab=99.07  E-value=3.9e-09  Score=108.43  Aligned_cols=173  Identities=14%  Similarity=0.155  Sum_probs=123.2

Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      ++++.-..-|+..| ....|.=.+++.|+.+..+               ....+.+++|..++    -..+|++|+.||.
T Consensus       139 m~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~---------------~~~~~~lN~v~in~----~hgLla~Gt~~g~  198 (703)
T KOG2321|consen  139 MKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPF---------------ETDSGELNVVSINE----EHGLLACGTEDGV  198 (703)
T ss_pred             ccccCCCccEEEee-cCcceEEEEcccccccccc---------------ccccccceeeeecC----ccceEEecccCce
Confidence            33343333344444 3567888899999988877               55568899999999    4568999999999


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEeccCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCC
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTGHEQ-----PVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFAS  496 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~  496 (540)
                      |..||.+..+..  +.   ......+..|.+     .|+++.|+.+|-.++.|+.+|.+.|++.........+.|....+
T Consensus       199 VEfwDpR~ksrv--~~---l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p  273 (703)
T KOG2321|consen  199 VEFWDPRDKSRV--GT---LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP  273 (703)
T ss_pred             EEEecchhhhhh--ee---eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence            999998764321  00   011112233433     49999999999999999999999999773333333455666668


Q ss_pred             ceEEEEeeC--CCEEEEecCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         497 PESVVMSRE--GVIVVNYERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       497 v~~l~fspd--g~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      |..+.|.+.  +..|++.+...++||+.. |+..+..+....|+.+
T Consensus       274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~  319 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDF  319 (703)
T ss_pred             eeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCce
Confidence            999999776  567888888999999987 9988888744445443

>KOG4547|consensus

Probab=99.06  E-value=1e-08  Score=106.14  Aligned_cols=144  Identities=16%  Similarity=0.153  Sum_probs=120.4

Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEc
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHW  427 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~  427 (540)
                      +.-+++-|...|.|.++++..|+....+.+             ..|.+.|+++.++.    +-..|.|++.|+.+..|+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st-------------~~h~~~v~~~~~~~----~~~ciyS~~ad~~v~~~~~  131 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLST-------------DKHYGNVNEILDAQ----RLGCIYSVGADLKVVYILE  131 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEec-------------CCCCCcceeeeccc----ccCceEecCCceeEEEEec
Confidence            334678899999999999999998877732             47999999999987    7789999999999999997


Q ss_pred             CCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeC-
Q psy1242         428 NARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSRE-  505 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspd-  505 (540)
                      ..           ...+....+-...+.+++.+|||..+++++  +.|++|+. +++.+.++.+|.+  +|.+++|.-+ 
T Consensus       132 ~~-----------~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s--~v~t~~f~~~~  196 (541)
T KOG4547|consen  132 KE-----------KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS--PVRTLSFTTLI  196 (541)
T ss_pred             cc-----------ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc--ceEEEEEEEec
Confidence            65           345677778888899999999999999887  58999865 8999999999999  8999999887 


Q ss_pred             ----CCEEEEec--CCeEEEEecC
Q psy1242         506 ----GVIVVNYE--RGHIAAFTMN  523 (540)
Q Consensus       506 ----g~~l~s~~--dg~I~lw~~~  523 (540)
                          |.++.++.  +.-+.+|-++
T Consensus       197 ~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  197 DGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             cccccceeeeccccccceeEEEEE
Confidence                78887753  4556777554

>KOG1963|consensus

Probab=99.04  E-value=1.1e-08  Score=109.98  Aligned_cols=157  Identities=17%  Similarity=0.218  Sum_probs=115.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      -.+++.++.|++  ...-.+..+.+|...++.  .....+...         ..|.-.++|.++||    .++++++|..
T Consensus       163 ~~~I~~~~~ge~--~~i~~~~~~~~~~v~~~~--~~~~~~~~~---------~~Htf~~t~~~~sp----n~~~~Aa~d~  225 (792)
T KOG1963|consen  163 PKSIVDNNSGEF--KGIVHMCKIHIYFVPKHT--KHTSSRDIT---------VHHTFNITCVALSP----NERYLAAGDS  225 (792)
T ss_pred             CccEEEcCCceE--EEEEEeeeEEEEEecccc--eeeccchhh---------hhhcccceeEEecc----ccceEEEecc
Confidence            367777888884  333346778899888655  222112111         35777799999999    8999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      ||.|.+|.--....      + ..-.+.+.-|.+.|++++|+++|.+|.||+..|.+.+|.. +++ .+-|..-.+  +|
T Consensus       226 dGrI~vw~d~~~~~------~-~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs--~I  295 (792)
T KOG1963|consen  226 DGRILVWRDFGSSD------D-SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS--PI  295 (792)
T ss_pred             CCcEEEEecccccc------c-cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC--ee
Confidence            99999997332111      1 2234677889999999999999999999999999999955 665 333333334  79


Q ss_pred             eEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242         498 ESVVMSREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       498 ~~l~fspdg~~l~s-~~dg~I~lw~~  522 (540)
                      ..+.+|||+...+. .+|+.|++-..
T Consensus       296 ~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  296 LHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             EEEEEcCCCCeEEEEecCceEEEEec
Confidence            99999999997665 57888888754

>KOG0644|consensus

Probab=99.03  E-value=8.9e-11  Score=124.65  Aligned_cols=113  Identities=20%  Similarity=0.326  Sum_probs=104.2

Q ss_pred             eccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe
Q psy1242         391 FGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS  470 (540)
Q Consensus       391 ~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs  470 (540)
                      .||...|.|+.|..    .|.+++||+.|..|+||.+.+           ..++....||.+.++.++.+.+..+++++|
T Consensus       187 lgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et-----------~~~lAs~rGhs~ditdlavs~~n~~iaaaS  251 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMET-----------ARCLASCRGHSGDITDLAVSSNNTMIAAAS  251 (1113)
T ss_pred             Hhhhhheeeeeecc----ccceEeecCccceeeeeeccc-----------hhhhccCCCCccccchhccchhhhhhhhcc
Confidence            79999999999999    899999999999999999776           568899999999999999999999999999


Q ss_pred             CCCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         471 QLGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       471 ~Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      .|..|++|- .+|.++..+.+|.+  .|++|+|+|--   .++.||++++||..
T Consensus       252 ~D~vIrvWrl~~~~pvsvLrghtg--avtaiafsP~~---sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  252 NDKVIRVWRLPDGAPVSVLRGHTG--AVTAIAFSPRA---SSSDDGTCRIWDAR  300 (1113)
T ss_pred             cCceEEEEecCCCchHHHHhcccc--ceeeeccCccc---cCCCCCceEecccc
Confidence            999999995 59999999999999  78999999976   56789999999876

>KOG1310|consensus

Probab=99.02  E-value=9.5e-10  Score=112.18  Aligned_cols=168  Identities=15%  Similarity=0.121  Sum_probs=124.2

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      .-|+|+.|+.+|. +|++||.|-.+.|||.-..|+++.+.              .||...|.|+.|-|-  .+.+.++||
T Consensus        51 GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~--------------TgHtaNIFsvKFvP~--tnnriv~sg  113 (758)
T KOG1310|consen   51 GCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSIS--------------TGHTANIFSVKFVPY--TNNRIVLSG  113 (758)
T ss_pred             ceecceeecCCCC-EEeecCCcceEEeecchhcceeeeee--------------cccccceeEEeeecc--CCCeEEEec
Confidence            3489999999999 58999999999999998888888874              799999999999993  256789999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC--c------EEEE
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTTFG--D------LLRS  487 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~~g--~------~~~~  487 (540)
                      ..|..|+++|+...+......+ ..+....+..|...|..++..|++ ..+.+++.||+++-++..-  .      +...
T Consensus       114 AgDk~i~lfdl~~~~~~~~d~~-~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~  192 (758)
T KOG1310|consen  114 AGDKLIKLFDLDSSKEGGMDHG-MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI  192 (758)
T ss_pred             cCcceEEEEecccccccccccC-ccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence            9999999999875332211110 123456667899999999999998 6889999999999876422  1      1110


Q ss_pred             e-cCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEec
Q psy1242         488 L-DPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTM  522 (540)
Q Consensus       488 l-~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~  522 (540)
                      + ..+..-+...++.++|... +|+. |++-..++||.
T Consensus       193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            1 0111112457889998755 5555 46778888884

>KOG2139|consensus

Probab=99.01  E-value=1.6e-08  Score=98.82  Aligned_cols=159  Identities=14%  Similarity=0.133  Sum_probs=108.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCe----EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR----IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~----~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      +.|++|-|-+..-|+.|.. +-|.||.....-    .+.....|..     .+....|| ..|+++.|.+    ||..++
T Consensus       143 vtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~-----qvl~~pgh-~pVtsmqwn~----dgt~l~  211 (445)
T KOG2139|consen  143 VTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHL-----QVLQDPGH-NPVTSMQWNE----DGTILV  211 (445)
T ss_pred             eeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccch-----hheeCCCC-ceeeEEEEcC----CCCEEe
Confidence            6788998887766788774 558899775321    1111111111     11112466 6899999999    999999


Q ss_pred             EEeC-CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCcEEEEecCC
Q psy1242         415 SGSA-DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--FGDLLRSLDPP  491 (540)
Q Consensus       415 sgs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--~g~~~~~l~~~  491 (540)
                      +++. |..|+|||.+++..         .++.  .-..+.++-+.|||||.++..++-|+..++|..  +....+-.-+ 
T Consensus       212 tAS~gsssi~iWdpdtg~~---------~pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-  279 (445)
T KOG2139|consen  212 TASFGSSSIMIWDPDTGQK---------IPLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-  279 (445)
T ss_pred             ecccCcceEEEEcCCCCCc---------cccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-
Confidence            9984 78999999887542         2222  233456788999999999999999999999944  2233333322 


Q ss_pred             CCCCCceEEEEeeCCCEEEEecCCeEEEEec
Q psy1242         492 SGFASPESVVMSREGVIVVNYERGHIAAFTM  522 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~  522 (540)
                      .+  .|...+|+|+|++|.....|.-.+|++
T Consensus       280 sg--rvqtacWspcGsfLLf~~sgsp~lysl  308 (445)
T KOG2139|consen  280 SG--RVQTACWSPCGSFLLFACSGSPRLYSL  308 (445)
T ss_pred             CC--ceeeeeecCCCCEEEEEEcCCceEEEE
Confidence            33  689999999999888755555555553

>KOG1787|consensus

Probab=98.99  E-value=3.8e-11  Score=135.00  Aligned_cols=124  Identities=18%  Similarity=0.096  Sum_probs=116.6

Q ss_pred             ccccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccC-cccccChhhHHHHHHHHh
Q psy1242           3 YNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSK-PIGALNPSRMAYFEERYN   81 (540)
Q Consensus         3 ~~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~-~~~~~~~~~~~~~~~~~~   81 (540)
                      +-.+|...++++++|||++|.++||++|+.++||.|||..+++-+...|+-.+..|||.++ |++++++++++.+...+.
T Consensus       854 ~v~r~~~~~~~~~~~l~~~~~~vg~a~~~~~~~~~~~~~~~~v~~~~~~r~~~~~~~d~~vv~~~ar~~~~l~~~~~~~s  933 (1126)
T KOG1787|consen  854 FVARRLRDDISDQSYLVQLNLFVGRADNDIIQHPGFGDYSFRVYSTDSLRMRQSVFRDGDVVTCGARLEQYLAALQYPVS  933 (1126)
T ss_pred             eehhhcccchhheeeeeecceEEEeccCccccccCccccccceEeeehhhhccccccccceeeeeecccccccccccccc
Confidence            5679999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             hccCCCCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--cccccccc
Q psy1242          82 SWEHENIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYA  127 (540)
Q Consensus        82 ~~~~~~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~  127 (540)
                      ..+|..++.+||+ ||+..+-+.+|.-|.+ |         ++|| .++  ..+..+|+
T Consensus       934 ~s~D~tI~~~~~s-~~~~~g~~~~~~s~~~e~~~lt~~~~~~~~~~~~~~~s~v~~~~~  991 (1126)
T KOG1787|consen  934 SSEDGTIPLLYWS-HISSIGDIVVSGSAPEEFTTLTGQEASGKFSLVDAELSLVISGAK  991 (1126)
T ss_pred             cCCCcceeeeeec-cccccccccccccccCccchheecccceeeeecchhhhhhhhhcc
Confidence            9999999999999 9999999999999988 7         8899 777  66666666

>KOG3881|consensus

Probab=98.96  E-value=4.4e-08  Score=96.74  Aligned_cols=158  Identities=15%  Similarity=0.146  Sum_probs=120.8

Q ss_pred             ecCCCEEEEEEecC--CcEEEEEccCCeEEEEEeccc-ceeeeeeEEEeeccCcceEEEEeccCccCC--CcEEEEEeCC
Q psy1242         345 TVDSRFLLACGFWD--NSFRVFSTDNARIVQIIFGHY-GVVTSRIVQIIFGHYGVVTCLSRSECNITA--DCFIASGSAD  419 (540)
Q Consensus       345 spdg~~llasgs~D--gsv~iwd~~~g~~~~~l~~~~-~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d--g~~l~sgs~D  419 (540)
                      ++...+++|+|+..  +.+.|||++..+.+..-+.-. +.+.       -.-.-.++.+.|-+    +  ...|+|+..-
T Consensus       157 ~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~-------LrVPvW~tdi~Fl~----g~~~~~fat~T~~  225 (412)
T KOG3881|consen  157 TDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG-------LRVPVWITDIRFLE----GSPNYKFATITRY  225 (412)
T ss_pred             CCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccc-------ceeeeeeccceecC----CCCCceEEEEecc
Confidence            55666788889998  889999998764432221000 0000       00112456788877    5  6889999999


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEE-ecCCCCCCCc
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRS-LDPPSGFASP  497 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~-l~~~~~~~~v  497 (540)
                      +.|++||.+.+          .+|+..+.--+.+++++...|++..|++|..-|.+..+|. .++++.. +.+-.+  .|
T Consensus       226 hqvR~YDt~~q----------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG--si  293 (412)
T KOG3881|consen  226 HQVRLYDTRHQ----------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG--SI  293 (412)
T ss_pred             eeEEEecCccc----------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC--Cc
Confidence            99999998753          3688888888999999999999999999999999977765 6666554 777777  78


Q ss_pred             eEEEEeeCCCEEEE-ecCCeEEEEecCCc
Q psy1242         498 ESVVMSREGVIVVN-YERGHIAAFTMNGN  525 (540)
Q Consensus       498 ~~l~fspdg~~l~s-~~dg~I~lw~~~g~  525 (540)
                      .+|..+|.++++++ |-|..|+|+|+..+
T Consensus       294 rsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  294 RSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ceEEEcCCCceEEeeccceeEEEeecccc
Confidence            99999999999998 56999999999863

>KOG2111|consensus

Probab=98.96  E-value=2.6e-07  Score=89.26  Aligned_cols=98  Identities=18%  Similarity=0.271  Sum_probs=79.7

Q ss_pred             EEEE-EecCCcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCc-EEEEE
Q psy1242         351 LLAC-GFWDNSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCT-VLLWH  426 (540)
Q Consensus       351 llas-gs~Dgsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt-V~lWd  426 (540)
                      +||. |-.-|.|+|-|+...+.  -..+               .+|.+.|.|++.+-    +|..+||+|..|| |||||
T Consensus       150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I---------------~AH~s~Iacv~Ln~----~Gt~vATaStkGTLIRIFd  210 (346)
T KOG2111|consen  150 LLAFPGFKTGQVQIVDLASTKPNAPSII---------------NAHDSDIACVALNL----QGTLVATASTKGTLIRIFD  210 (346)
T ss_pred             EEEcCCCccceEEEEEhhhcCcCCceEE---------------EcccCceeEEEEcC----CccEEEEeccCcEEEEEEE
Confidence            4444 55678999999876544  2344               78999999999998    9999999998886 68999


Q ss_pred             cCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         427 WNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                      ..+           ++++..+...  ...|.|++|||+..+||.+|..||+.|+
T Consensus       211 t~~-----------g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  211 TED-----------GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIF  253 (346)
T ss_pred             cCC-----------CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence            776           4566776433  3479999999999999999999999987

>KOG1310|consensus

Probab=98.96  E-value=1.5e-09  Score=110.85  Aligned_cols=120  Identities=21%  Similarity=0.299  Sum_probs=97.0

Q ss_pred             EEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCC--CC
Q psy1242         388 QIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAE--LG  464 (540)
Q Consensus       388 ~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spd--g~  464 (540)
                      +.|.||++-|+|++|+.    +|.+|++||.|-.+.|||.-.           .+++..+ +||..-|.|+.|-|.  .+
T Consensus        44 ~eL~GH~GCVN~LeWn~----dG~lL~SGSDD~r~ivWd~~~-----------~KllhsI~TgHtaNIFsvKFvP~tnnr  108 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNA----DGELLASGSDDTRLIVWDPFE-----------YKLLHSISTGHTANIFSVKFVPYTNNR  108 (758)
T ss_pred             hhhccccceecceeecC----CCCEEeecCCcceEEeecchh-----------cceeeeeecccccceeEEeeeccCCCe
Confidence            34489999999999999    999999999999999999753           3455555 799999999999984  46


Q ss_pred             EEEEEeCCCcEEEEeCCC-----------cEEEEecCCCCCCCceEEEEeeCC-CEEEE-ecCCeEEEEecCC
Q psy1242         465 LVVSGSQLGPVLVHTTFG-----------DLLRSLDPPSGFASPESVVMSREG-VIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       465 ~lasgs~Dg~v~iw~~~g-----------~~~~~l~~~~~~~~v~~l~fspdg-~~l~s-~~dg~I~lw~~~g  524 (540)
                      +++||+.|..|++++.+.           ...+....|..  .|..|+-.|++ ..+.+ ++||+|+-||+..
T Consensus       109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~--rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD--RVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             EEEeccCcceEEEEecccccccccccCccchhhhhhhhhh--hhhheecCCCCCceEEEecCCcceeeecccC
Confidence            899999999999986541           23345556666  68899999998 44444 7899999999763

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=6.3e-08  Score=103.06  Aligned_cols=155  Identities=14%  Similarity=0.051  Sum_probs=105.3

Q ss_pred             EEEEEEecCCCEEEEEEe--cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-E
Q psy1242         339 HNCFVTTVDSRFLLACGF--WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-S  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs--~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-s  415 (540)
                      +.+.+|+|||+.|+.+..  .+..|.+||+.+|+.. .+               ..+.+.+.+.+|+|    ||+.|+ +
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l---------------~~~~g~~~~~~~SP----DG~~la~~  263 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV---------------GNFPGMTFAPRFSP----DGRKVVMS  263 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee---------------ecCCCcccCcEECC----CCCEEEEE
Confidence            677889999997544432  2467999999887653 33               34566778899999    998765 5


Q ss_pred             EeCCCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCc--EEEEeCCCcEEEEecC
Q psy1242         416 GSADCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGP--VLVHTTFGDLLRSLDP  490 (540)
Q Consensus       416 gs~Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~--v~iw~~~g~~~~~l~~  490 (540)
                      .+.++.  |.+||+.+.            ....+..+.......+|+|||+.|+..+ .+|.  |.+++.++...+.+..
T Consensus       264 ~~~~g~~~Iy~~d~~~~------------~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~  331 (435)
T PRK05137        264 LSQGGNTDIYTMDLRSG------------TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF  331 (435)
T ss_pred             EecCCCceEEEEECCCC------------ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence            666776  555565441            2345666666677899999999888776 3443  5556665555555544


Q ss_pred             CCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEE
Q psy1242         491 PSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRL  527 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l  527 (540)
                      +.+  .+...+|+|+|+.|+...    +..|.+|+++|...
T Consensus       332 ~~~--~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~  370 (435)
T PRK05137        332 GGG--RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE  370 (435)
T ss_pred             CCC--cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence            333  356789999999988632    23678888765443

>KOG1587|consensus

Probab=98.94  E-value=1.1e-08  Score=109.32  Aligned_cols=171  Identities=18%  Similarity=0.143  Sum_probs=120.9

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+.|+.|+|....++|+|..+|.|.+||++.+..  ...+..+           ...|.++|+.+.|-..  ..+.-+++
T Consensus       244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~-----------~~sh~~~v~~vvW~~~--~~~~~f~s  310 (555)
T KOG1587|consen  244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL-----------EVSHSEPVTAVVWLQN--EHNTEFFS  310 (555)
T ss_pred             ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc-----------cccCCcCeEEEEEecc--CCCCceEE
Confidence            3788889999998999999999999999987665  2222111           1468999999999761  12355999


Q ss_pred             EeCCCcEEEEEcCCCcccc-----------------------------------cCC-----------CCC--C----cc
Q psy1242         416 GSADCTVLLWHWNARTQSI-----------------------------------VGE-----------TDT--P----TP  443 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~-----------------------------------~~~-----------~~~--~----~~  443 (540)
                      +|.||.|+.|+++....-.                                   +|.           +..  .    +.
T Consensus       311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~  390 (555)
T KOG1587|consen  311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG  390 (555)
T ss_pred             EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence            9999999999976422100                                   000           000  1    22


Q ss_pred             eEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCcEEEEecCCCCCCCceEEEEeeCCCEEE-Ee-cCCeEEE
Q psy1242         444 RATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--FGDLLRSLDPPSGFASPESVVMSREGVIVV-NY-ERGHIAA  519 (540)
Q Consensus       444 ~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--~g~~~~~l~~~~~~~~v~~l~fspdg~~l~-s~-~dg~I~l  519 (540)
                      ...+..|.++|.++.++|=+..++..+.|.+++||..  ...++..+..+..  .+.+++|||.-.-+. ++ .+|.|.+
T Consensus       391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~--~v~~vaWSptrpavF~~~d~~G~l~i  468 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD--YVTDVAWSPTRPAVFATVDGDGNLDI  468 (555)
T ss_pred             cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc--eeeeeEEcCcCceEEEEEcCCCceeh
Confidence            3345568899999999998775555555999999954  3445555655555  689999999876544 44 4799999


Q ss_pred             EecC
Q psy1242         520 FTMN  523 (540)
Q Consensus       520 w~~~  523 (540)
                      ||+.
T Consensus       469 WDLl  472 (555)
T KOG1587|consen  469 WDLL  472 (555)
T ss_pred             hhhh
Confidence            9976

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=5.1e-08  Score=103.47  Aligned_cols=158  Identities=14%  Similarity=0.015  Sum_probs=104.0

Q ss_pred             EEEEEEecCCCEEEEEEecC--CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-E
Q psy1242         339 HNCFVTTVDSRFLLACGFWD--NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-S  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~D--gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-s  415 (540)
                      +.+.+|+|||+.|+.+...+  ..|.+||+.+|+... +               ....+.+.+.+|+|    ||+.|+ +
T Consensus       198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l---------------~~~~g~~~~~~~SP----DG~~la~~  257 (427)
T PRK02889        198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V---------------ANFKGSNSAPAWSP----DGRTLAVA  257 (427)
T ss_pred             cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e---------------ecCCCCccceEECC----CCCEEEEE
Confidence            56778999999754443333  359999999887543 3               23345567899999    998876 5


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEe--CCCcEEEEecCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVHT--TFGDLLRSLDPPS  492 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~--~~g~~~~~l~~~~  492 (540)
                      .+.++...||.++...          .....+..+.......+|+|||+.|+..+. +|...||.  ..+.....+....
T Consensus       258 ~~~~g~~~Iy~~d~~~----------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g  327 (427)
T PRK02889        258 LSRDGNSQIYTVNADG----------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG  327 (427)
T ss_pred             EccCCCceEEEEECCC----------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC
Confidence            6788988888775422          224455556666677899999998876654 56666763  3333333332222


Q ss_pred             CCCCceEEEEeeCCCEEEEec-C---CeEEEEecCCcEEE
Q psy1242         493 GFASPESVVMSREGVIVVNYE-R---GHIAAFTMNGNRLR  528 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~-d---g~I~lw~~~g~~l~  528 (540)
                      .  .....+|||||+.|+... +   ..|.+|++++....
T Consensus       328 ~--~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        328 S--YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             C--CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence            2  234688999999988632 2   26899998744333

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.93  E-value=2.1e-07  Score=98.29  Aligned_cols=158  Identities=17%  Similarity=0.070  Sum_probs=104.0

Q ss_pred             EEEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ..+.+|+|||+.++++.+.++  .|.+|++.+++.. .+               ..+.......+|+|    +|++|+.+
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l---------------~~~~~~~~~~~~s~----dg~~l~~~  295 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RL---------------TNGPGIDTEPSWSP----DGKSIAFT  295 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-EC---------------CCCCCCCCCEEECC----CCCEEEEE
Confidence            345788999998766666555  4888888876543 33               33445556778999    99888766


Q ss_pred             eC-CCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCcEEEEecC
Q psy1242         417 SA-DCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG---PVLVHTTFGDLLRSLDP  490 (540)
Q Consensus       417 s~-Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg---~v~iw~~~g~~~~~l~~  490 (540)
                      +. ++.  |.++++...            ....+..+...+..++|+|+|++++.++.++   .|.+++..+.....+..
T Consensus       296 s~~~g~~~iy~~d~~~~------------~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~  363 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGG------------EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD  363 (417)
T ss_pred             ECCCCCceEEEEECCCC------------CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence            54 444  555554431            2334444556677889999999998888765   55666654444444443


Q ss_pred             CCCCCCceEEEEeeCCCEEEEec--C--CeEEEEecCCcEEEeee
Q psy1242         491 PSGFASPESVVMSREGVIVVNYE--R--GHIAAFTMNGNRLRHES  531 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~~--d--g~I~lw~~~g~~l~~~~  531 (540)
                      ..   .....+|+|+|+.|+...  +  ..+.+.+.+|+....+.
T Consensus       364 ~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~  405 (417)
T TIGR02800       364 TG---LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLP  405 (417)
T ss_pred             CC---CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECC
Confidence            22   234678999999887742  2  35778888888776664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0322|consensus

Probab=98.90  E-value=8.7e-09  Score=96.82  Aligned_cols=69  Identities=23%  Similarity=0.334  Sum_probs=63.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+.+-||++ ++|+++||+.+|||+.++...+..+               +-|.+.|++++|+|    +...++++|.
T Consensus       254 v~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVL---------------kyHsagvn~vAfsp----d~~lmAaask  313 (323)
T KOG0322|consen  254 VSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVL---------------KYHSAGVNAVAFSP----DCELMAAASK  313 (323)
T ss_pred             ccceEEccCCc-EEeecccCCcEEEEEeccCCchhhh---------------hhhhcceeEEEeCC----CCchhhhccC
Confidence            45666789999 7899999999999999999999888               78999999999999    8899999999


Q ss_pred             CCcEEEEEc
Q psy1242         419 DCTVLLWHW  427 (540)
Q Consensus       419 DgtV~lWd~  427 (540)
                      |++|.+|++
T Consensus       314 D~rISLWkL  322 (323)
T KOG0322|consen  314 DARISLWKL  322 (323)
T ss_pred             CceEEeeec
Confidence            999999985

>KOG0771|consensus

Probab=98.90  E-value=1.7e-08  Score=100.48  Aligned_cols=186  Identities=15%  Similarity=0.133  Sum_probs=116.1

Q ss_pred             ecCCcEEEEEccCcceEEEEc-CCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC--------CC
Q psy1242         260 LHMPSVVTVTANHQFAINRWN-PDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--------DN  330 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~-~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~--------~~  330 (540)
                      +..++..+++++.|+++|+|+ |..........|..+|.    .+.||+||.++++-+.+  ....|...        .+
T Consensus       152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~----DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  152 FNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK----DLDFSPDGKFLASIGAD--SARVWSVNTGAALARKTP  225 (398)
T ss_pred             EcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc----cceeCCCCcEEEEecCC--ceEEEEeccCchhhhcCC
Confidence            334445599999999999999 55544455556665555    57899999666543222  22223222        12


Q ss_pred             cCcceeeEEEEEEEecCC--C--EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         331 FSQKLRVRHNCFVTTVDS--R--FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spdg--~--~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                      ++.......+  .|+.|+  .  ++++....-+.|+.|++..-+.-..++.         .+. ..-...|+++++++  
T Consensus       226 ~~k~~~~~~c--RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~---------~~~-~~~~~siSsl~VS~--  291 (398)
T KOG0771|consen  226 FSKDEMFSSC--RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL---------RKK-IKRFKSISSLAVSD--  291 (398)
T ss_pred             cccchhhhhc--eecccCCCceEEEEEecCCCCceeEEEeeeeccccccch---------hhh-hhccCcceeEEEcC--
Confidence            3333333233  334444  2  2333344456677766542111011100         000 11234799999999  


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                        +|++++.|+.||.|-|++....           +.++.. ..|...|+.+.|+||.+++++.+.|.+..|-
T Consensus       292 --dGkf~AlGT~dGsVai~~~~~l-----------q~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  292 --DGKFLALGTMDGSVAIYDAKSL-----------QRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             --CCcEEEEeccCCcEEEEEecee-----------eeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence              9999999999999999997652           233333 6799999999999999999999988887764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=5.2e-07  Score=95.58  Aligned_cols=162  Identities=12%  Similarity=0.026  Sum_probs=101.2

Q ss_pred             EEEEEecCCCEEEEEEecCC----cEEEEEccCC---eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         340 NCFVTTVDSRFLLACGFWDN----SFRVFSTDNA---RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dg----sv~iwd~~~g---~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ...+|||||++|+.+...+|    .+.+|++..+   +..+..               .++.+.....+|+|    ||+.
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt---------------~~~~~~~~~p~wSP----DG~~  294 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL---------------NEAFGTQGNPSFSP----DGTR  294 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee---------------cCCCCCcCCeEECC----CCCE
Confidence            45689999998766654433    2344666542   222222               23334456789999    9998


Q ss_pred             EEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCcEEEEe
Q psy1242         413 IASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL-G--PVLVHTTFGDLLRSL  488 (540)
Q Consensus       413 l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-g--~v~iw~~~g~~~~~l  488 (540)
                      |+..+ .+|...||.+.....        +.....+..+...+...+|||||+.|+..+.+ |  .|.+|+..+...+.+
T Consensus       295 Laf~s~~~g~~~ly~~~~~~~--------g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L  366 (428)
T PRK01029        295 LVFVSNKDGRPRIYIMQIDPE--------GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL  366 (428)
T ss_pred             EEEEECCCCCceEEEEECccc--------ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc
Confidence            87665 577777776543110        11234455555667789999999988876543 3  466777644444455


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEE-ec---CCeEEEEecCCcEEEee
Q psy1242         489 DPPSGFASPESVVMSREGVIVVN-YE---RGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s-~~---dg~I~lw~~~g~~l~~~  530 (540)
                      .....  .+....|+|||+.|+. +.   ...|.++++++.....+
T Consensus       367 t~~~~--~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        367 TTSPE--NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             cCCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            43333  4578999999998875 32   35688899886544433

>KOG4547|consensus

Probab=98.88  E-value=8.7e-08  Score=99.31  Aligned_cols=163  Identities=16%  Similarity=0.157  Sum_probs=123.3

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec------cC----------ccCCCcEEE
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS------EC----------NITADCFIA  414 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s------p~----------~~~dg~~l~  414 (540)
                      ++|....||.+|||++.+++..+.+.. ..           .-.+..++..|.      |.          ...+-..|+
T Consensus         7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p-~~-----------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv   74 (541)
T KOG4547|consen    7 YFALSTGDGRLRIWDTAKNQLQQEFAP-IA-----------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV   74 (541)
T ss_pred             eEeecCCCCeEEEEEccCceeeeeecc-ch-----------hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence            478888999999999999988776621 11           111222333321      10          001345677


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      -|...|.|.+++...+           +....+  .+|.+.|+++.++.+..+|.|++.|+.+..|+. .++..+..+..
T Consensus        75 lgt~~g~v~~ys~~~g-----------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~  143 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGG-----------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ  143 (541)
T ss_pred             eecCCccEEEEEecCC-----------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC
Confidence            7888999999997763           333344  479999999999999999999999999999976 77788888877


Q ss_pred             CCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         492 SGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                      ..  .+.+++.+|||.+++++ .++|++|+++ ++.+.++. |.++|+++
T Consensus       144 ~~--~~~sl~is~D~~~l~~a-s~~ik~~~~~~kevv~~ftgh~s~v~t~  190 (541)
T KOG4547|consen  144 KP--LVSSLCISPDGKILLTA-SRQIKVLDIETKEVVITFTGHGSPVRTL  190 (541)
T ss_pred             CC--ccceEEEcCCCCEEEec-cceEEEEEccCceEEEEecCCCcceEEE
Confidence            76  67999999999999987 4899999998 77777776 88888876

>KOG1272|consensus

Probab=98.86  E-value=1e-08  Score=103.06  Aligned_cols=148  Identities=17%  Similarity=0.205  Sum_probs=118.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+.|-|-. +||++++..|-++--|+.+|+.+..+               ..-.+.+..++-+|    -...+-+|..
T Consensus       212 v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~---------------~t~~G~~~vm~qNP----~NaVih~Ghs  271 (545)
T KOG1272|consen  212 VARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASI---------------RTGAGRTDVMKQNP----YNAVIHLGHS  271 (545)
T ss_pred             hhhhcccchh-heeeecccCCceEEEeechhhhhHHH---------------HccCCccchhhcCC----ccceEEEcCC
Confidence            4445556655 48899999999999999999998877               55667888899999    6678889999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      .|+|.+|.-..           .+|+..+..|.++|.+|++.++|+++||.+.|..|+|||. .-..+.++..+.   +.
T Consensus       272 nGtVSlWSP~s-----------kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a  337 (545)
T KOG1272|consen  272 NGTVSLWSPNS-----------KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PA  337 (545)
T ss_pred             CceEEecCCCC-----------cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Cc
Confidence            99999998654           4577788899999999999999999999999999999987 333444444322   45


Q ss_pred             eEEEEeeCCCEEEEecCCeEEEEe
Q psy1242         498 ESVVMSREGVIVVNYERGHIAAFT  521 (540)
Q Consensus       498 ~~l~fspdg~~l~s~~dg~I~lw~  521 (540)
                      ..++||..| .||++-...|.+|.
T Consensus       338 ~~ls~Sqkg-lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  338 SNLSLSQKG-LLALSYGDHVQIWK  360 (545)
T ss_pred             ccccccccc-ceeeecCCeeeeeh
Confidence            788898766 55666667888994

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.84  E-value=2.5e-07  Score=98.19  Aligned_cols=157  Identities=13%  Similarity=0.034  Sum_probs=101.6

Q ss_pred             EEEEEEecCCCEEEEEEe--cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGF--WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs--~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ....+|||||+.|+.+..  .+..+.+|++.+|+.....                ...+.+..++|+|    ||+.|+..
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~----------------~~~~~~~~~~~SP----DG~~La~~  260 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA----------------SFPRHNGAPAFSP----DGSKLAFA  260 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc----------------CCCCCcCCeEECC----CCCEEEEE
Confidence            567789999997544432  2457899999887643322                2233355689999    99988754


Q ss_pred             -eCCC--cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEE--eCCCcEEEEecC
Q psy1242         417 -SADC--TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVH--TTFGDLLRSLDP  490 (540)
Q Consensus       417 -s~Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw--~~~g~~~~~l~~  490 (540)
                       +.++  .|.+||+.++           + ...+..+...+...+|+|||+.|+..+. +|...||  +..+.....+..
T Consensus       261 ~~~~g~~~I~~~d~~tg-----------~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~  328 (429)
T PRK03629        261 LSKTGSLNLYVMDLASG-----------Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW  328 (429)
T ss_pred             EcCCCCcEEEEEECCCC-----------C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec
Confidence             4455  4777887652           2 2344445556788999999998877765 4555665  444433444443


Q ss_pred             CCCCCCceEEEEeeCCCEEEEe-c---CCeEEEEecCCcEEEe
Q psy1242         491 PSGFASPESVVMSREGVIVVNY-E---RGHIAAFTMNGNRLRH  529 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~-~---dg~I~lw~~~g~~l~~  529 (540)
                      ...  .....+|+|||+.|+.. .   ...|.+|++++..+..
T Consensus       329 ~~~--~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~  369 (429)
T PRK03629        329 EGS--QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV  369 (429)
T ss_pred             CCC--CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence            333  34678999999998763 2   2458888887443333

>KOG4227|consensus

Probab=98.82  E-value=1.5e-07  Score=92.82  Aligned_cols=205  Identities=12%  Similarity=0.060  Sum_probs=132.3

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeE
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVR  338 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~  338 (540)
                      ++....-.|||++.|..+++|++..-.                   .+.-|                +..+...+...-.
T Consensus        63 qFS~N~~~L~SGGDD~~~~~W~~de~~-------------------~~k~~----------------KPI~~~~~~H~SN  107 (609)
T KOG4227|consen   63 QFSHNDRFLASGGDDMHGRVWNVDELM-------------------VRKTP----------------KPIGVMEHPHRSN  107 (609)
T ss_pred             eeccCCeEEeecCCcceeeeechHHHH-------------------hhcCC----------------CCceeccCccccc
Confidence            344444459999999999999975310                   00000                0011122233334


Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.|++|...+++ +.+|..+++|...|+++.+.+..+. |            ....+.|..+..+|    ..+.|++.+.
T Consensus       108 IF~L~F~~~N~~-~~SG~~~~~VI~HDiEt~qsi~V~~-~------------~~~~~~VY~m~~~P----~DN~~~~~t~  169 (609)
T KOG4227|consen  108 IFSLEFDLENRF-LYSGERWGTVIKHDIETKQSIYVAN-E------------NNNRGDVYHMDQHP----TDNTLIVVTR  169 (609)
T ss_pred             eEEEEEccCCee-EecCCCcceeEeeecccceeeeeec-c------------cCcccceeecccCC----CCceEEEEec
Confidence            788999988886 7899999999999999988876651 1            12335899999999    7889999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCcE--EEEecC----C
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTTFGDL--LRSLDP----P  491 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~~g~~--~~~l~~----~  491 (540)
                      ++.|.+||.+..++-       +.+ ..+.........+.|+|.. .+|++.+..+-+-+|+...+.  +....+    +
T Consensus       170 ~~~V~~~D~Rd~~~~-------~~~-~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~  241 (609)
T KOG4227|consen  170 AKLVSFIDNRDRQNP-------ISL-VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLP  241 (609)
T ss_pred             CceEEEEeccCCCCC-------Cce-eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCc
Confidence            999999998864421       112 2222334556778899965 578889988889999764322  111111    1


Q ss_pred             CCCCCceEEEEeeCCCEEEEecC-CeEEEEecCC
Q psy1242         492 SGFASPESVVMSREGVIVVNYER-GHIAAFTMNG  524 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~d-g~I~lw~~~g  524 (540)
                      .....-.++.|+|+|..+.+-.. ..-.+||+-.
T Consensus       242 ~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S  275 (609)
T KOG4227|consen  242 QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS  275 (609)
T ss_pred             ccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence            11001246889999988776433 2344555543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=2.3e-07  Score=98.73  Aligned_cols=156  Identities=15%  Similarity=0.051  Sum_probs=102.1

Q ss_pred             EEEEEEecCCCEEEEEEec---CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-
Q psy1242         339 HNCFVTTVDSRFLLACGFW---DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~---Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-  414 (540)
                      +.+.+|+|||+.| +..+.   +..|.+||+.+++... +               ..+.+...+++|+|    ||+.|+ 
T Consensus       206 v~~p~wSpDg~~l-a~~s~~~~~~~l~~~dl~~g~~~~-l---------------~~~~g~~~~~~~Sp----DG~~l~~  264 (433)
T PRK04922        206 ILSPAWSPDGKKL-AYVSFERGRSAIYVQDLATGQREL-V---------------ASFRGINGAPSFSP----DGRRLAL  264 (433)
T ss_pred             cccccCCCCCCEE-EEEecCCCCcEEEEEECCCCCEEE-e---------------ccCCCCccCceECC----CCCEEEE
Confidence            5677899999975 54443   2469999998776543 3               23344556889999    998775 


Q ss_pred             EEeCCC--cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEE--EeC-CCcEEEEe
Q psy1242         415 SGSADC--TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLV--HTT-FGDLLRSL  488 (540)
Q Consensus       415 sgs~Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~i--w~~-~g~~~~~l  488 (540)
                      +.+.++  .|.+||+.++            ....+..+......++|+|||+.|+.++ .+|...+  ++. +++ ...+
T Consensus       265 ~~s~~g~~~Iy~~d~~~g------------~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~l  331 (433)
T PRK04922        265 TLSRDGNPEIYVMDLGSR------------QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERL  331 (433)
T ss_pred             EEeCCCCceEEEEECCCC------------CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEe
Confidence            556666  5888887652            2344555655567789999999888766 4555444  454 444 3333


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEe--cC--CeEEEEecCCcEEEee
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNY--ER--GHIAAFTMNGNRLRHE  530 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~--~d--g~I~lw~~~g~~l~~~  530 (540)
                      .....  ....++|+|+|+.|+..  .+  ..|.+|++.+..+..+
T Consensus       332 t~~g~--~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L  375 (433)
T PRK04922        332 TFQGN--YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL  375 (433)
T ss_pred             ecCCC--CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence            32322  34578999999998863  22  3689999875444444

>KOG2139|consensus

Probab=98.81  E-value=4.9e-07  Score=88.64  Aligned_cols=146  Identities=14%  Similarity=0.141  Sum_probs=97.4

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ..+..++|++||..++-+...|.+|+|||.++|..+...               ....+.++-+.|||    ||.+|..+
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---------------~~glgg~slLkwSP----dgd~lfaA  256 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---------------PKGLGGFSLLKWSP----DGDVLFAA  256 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---------------ccCCCceeeEEEcC----CCCEEEEe
Confidence            457888999999975444446788999999998877654               34567899999999    99999999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEE-EeCCCcEE-E-EeC-CCcE--------
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS-GSQLGPVL-V-HTT-FGDL--------  484 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~las-gs~Dg~v~-i-w~~-~g~~--------  484 (540)
                      ..|+..++|.....-          .+..-..+ .+.|...+|+|+|+.|+- ++..-.+. + ++. .+..        
T Consensus       257 t~davfrlw~e~q~w----------t~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~  325 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSW----------TKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKR  325 (445)
T ss_pred             cccceeeeehhcccc----------eecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCccccee
Confidence            999999999543211          11222222 338999999999986554 44443432 2 111 1111        


Q ss_pred             ---EEEec-----CCC--CCCCceEEEEeeCCCEEEEe
Q psy1242         485 ---LRSLD-----PPS--GFASPESVVMSREGVIVVNY  512 (540)
Q Consensus       485 ---~~~l~-----~~~--~~~~v~~l~fspdg~~l~s~  512 (540)
                         +..+.     ...  -+..+.+++|.|.|.+||+.
T Consensus       326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~  363 (445)
T KOG2139|consen  326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI  363 (445)
T ss_pred             eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence               11111     010  02267899999999999984

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=1.1e-06  Score=93.65  Aligned_cols=159  Identities=14%  Similarity=0.044  Sum_probs=98.7

Q ss_pred             EEEEEecCCCEEEEEEecCCc--EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDNS--FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgs--v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...+|+|||+.|+++.+.++.  |.++|+.+++.. .+               ..+.......+|+|    ||+.|+..+
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~l---------------t~~~~~~~~p~wSp----DG~~I~f~s  324 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RI---------------TRHRAIDTEPSWHP----DGKSLIFTS  324 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-EC---------------ccCCCCccceEECC----CCCEEEEEE
Confidence            356899999987777777776  667788776643 33               34555667889999    998886655


Q ss_pred             -CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEE--eCCCcEEEEecCCCC
Q psy1242         418 -ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVH--TTFGDLLRSLDPPSG  493 (540)
Q Consensus       418 -~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw--~~~g~~~~~l~~~~~  493 (540)
                       .++...||.++...         ++ ...+..........+|+|||+.|+..+. ++...||  +..+.....+.... 
T Consensus       325 ~~~g~~~Iy~~dl~~---------g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~-  393 (448)
T PRK04792        325 ERGGKPQIYRVNLAS---------GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR-  393 (448)
T ss_pred             CCCCCceEEEEECCC---------CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC-
Confidence             45555555443321         11 2222222223345789999998877654 4445554  44333334443221 


Q ss_pred             CCCceEEEEeeCCCEEEEe--cC--CeEEEEecCCcEEEeee
Q psy1242         494 FASPESVVMSREGVIVVNY--ER--GHIAAFTMNGNRLRHES  531 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~--~d--g~I~lw~~~g~~l~~~~  531 (540)
                        .....+|+|+|+.|+..  .+  ..+.+++.+|+....+.
T Consensus       394 --~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~  433 (448)
T PRK04792        394 --LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP  433 (448)
T ss_pred             --CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence              12345899999988763  23  34788889988777664

>KOG4227|consensus

Probab=98.79  E-value=8.3e-08  Score=94.53  Aligned_cols=151  Identities=16%  Similarity=0.104  Sum_probs=111.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccC------CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDN------ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~------g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ++++.|+.++++ ||+|+.|..+++|+++.      .++++...              ..|...|.|++|..    ...+
T Consensus        59 iNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~--------------~~H~SNIF~L~F~~----~N~~  119 (609)
T KOG4227|consen   59 INALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVME--------------HPHRSNIFSLEFDL----ENRF  119 (609)
T ss_pred             cceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceecc--------------CccccceEEEEEcc----CCee
Confidence            678889999996 79999999999999863      34444331              35778999999998    7889


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C----CcE
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE---QPVTSVAISAELGLVVSGSQLGPVLVHTT-F----GDL  484 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~----g~~  484 (540)
                      +.+|+.+++|.+-|+.+.+           .+.. ..|.   +.|..+..+|....+++.+.+|.|.+|+. .    +.+
T Consensus       120 ~~SG~~~~~VI~HDiEt~q-----------si~V-~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQ-----------SIYV-ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             EecCCCcceeEeeecccce-----------eeee-ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence            9999999999999988732           2222 2344   48999999999999999999999999965 2    233


Q ss_pred             EEEecCCCCCCCceEEEEeeCCCEE-EE-ecCCeEEEEecC
Q psy1242         485 LRSLDPPSGFASPESVVMSREGVIV-VN-YERGHIAAFTMN  523 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~fspdg~~l-~s-~~dg~I~lw~~~  523 (540)
                      +.-...++   ....+-|+|....| ++ .+.+-+-+||+.
T Consensus       188 ~~~AN~~~---~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  188 VLPANSGK---NFYTAEFHPETPALILVNSETGGPNVFDRR  225 (609)
T ss_pred             eeecCCCc---cceeeeecCCCceeEEeccccCCCCceeec
Confidence            33322222   45789999976644 44 445667777654

>KOG4497|consensus

Probab=98.78  E-value=3.7e-08  Score=95.18  Aligned_cols=132  Identities=14%  Similarity=0.057  Sum_probs=93.2

Q ss_pred             CccccCCCCeeeccCCCCCCccccccC--------CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE
Q psy1242         302 NLPLTLDPILTHPTSNNNAPVPKRHLG--------DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ  373 (540)
Q Consensus       302 ~~~~s~D~~l~~~g~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~  373 (540)
                      ..+||++|..+++.+..  ....|...        ...++     +.-+.|..|..+++...+.|+.|.+|++...+-..
T Consensus        13 ~c~fSp~g~yiAs~~~y--rlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c   85 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY--RLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC   85 (447)
T ss_pred             ceeECCCCCeeeeeeee--EEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence            35789999888765321  11111111        11122     45567788999988889999999999998777666


Q ss_pred             EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE-EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC
Q psy1242         374 IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF-IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ  452 (540)
Q Consensus       374 ~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~-l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~  452 (540)
                      .+               ....+.+.+++|||    ||+. |.+...|-.|.+|.+.+..            ...+.--+.
T Consensus        86 kI---------------deg~agls~~~WSP----dgrhiL~tseF~lriTVWSL~t~~------------~~~~~~pK~  134 (447)
T KOG4497|consen   86 KI---------------DEGQAGLSSISWSP----DGRHILLTSEFDLRITVWSLNTQK------------GYLLPHPKT  134 (447)
T ss_pred             Ee---------------ccCCCcceeeeECC----CcceEeeeecceeEEEEEEeccce------------eEEeccccc
Confidence            66               66778899999999    8855 5566679999999998733            122232344


Q ss_pred             CEEEEEEcCCCCEEEEEeC
Q psy1242         453 PVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       453 ~V~~v~~spdg~~lasgs~  471 (540)
                      .+..++|+|||++.+.+++
T Consensus       135 ~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  135 NVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CceeEEECCCCceeeeeec
Confidence            5688999999999888775

>KOG2110|consensus

Probab=98.78  E-value=1.2e-07  Score=93.16  Aligned_cols=110  Identities=17%  Similarity=0.162  Sum_probs=88.5

Q ss_pred             EEEEEEecCCCEEEEEEe-cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGF-WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs-~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ++++++++.+.++..-++ ..|.|.|||+.+-+.+..+               ..|.+.+.|++|++    +|.+|||+|
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I---------------~aH~~~lAalafs~----~G~llATAS  192 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI---------------NAHKGPLAALAFSP----DGTLLATAS  192 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE---------------EecCCceeEEEECC----CCCEEEEec
Confidence            456666666666544344 3588999999998888888               78999999999999    999999999


Q ss_pred             CCCcE-EEEEcCCCcccccCCCCCCcceEEeccCC--CCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         418 ADCTV-LLWHWNARTQSIVGETDTPTPRATLTGHE--QPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       418 ~DgtV-~lWd~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                      ..||| ||+.+..           ++.+..+....  ..|.+++|+|++++|++.|..++|.|+
T Consensus       193 eKGTVIRVf~v~~-----------G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiF  245 (391)
T KOG2110|consen  193 EKGTVIRVFSVPE-----------GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIF  245 (391)
T ss_pred             cCceEEEEEEcCC-----------ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEE
Confidence            98875 8998865           44566664333  357899999999999999999999887

>KOG1240|consensus

Probab=98.77  E-value=3e-07  Score=102.18  Aligned_cols=145  Identities=14%  Similarity=0.090  Sum_probs=94.8

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      +++.+..-+.+..||+++......++.             .-..|.|++++.+|    .++++++|...|.+.+||++-+
T Consensus      1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~-------------~~~hG~vTSi~idp----~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKN-------------QLRHGLVTSIVIDP----WCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             eEEEEEeccceEEecchhhhhHHhhhc-------------CccccceeEEEecC----CceEEEEecCCceEEEEEeecC
Confidence            567777788899999987665555421             23457899999999    8999999999999999999863


Q ss_pred             cccccCCCCCCcceEEe-ccCCCCEEEEEEcCCC---CEEEEEe--CCCcEEEEeC-CCcEEEEecCCCC----------
Q psy1242         431 TQSIVGETDTPTPRATL-TGHEQPVTSVAISAEL---GLVVSGS--QLGPVLVHTT-FGDLLRSLDPPSG----------  493 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg---~~lasgs--~Dg~v~iw~~-~g~~~~~l~~~~~----------  493 (540)
                                 .++... .++..+++.++.+|-.   ...++++  ..+.|-+|.. +|....++....+          
T Consensus      1228 -----------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1228 -----------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPS 1296 (1431)
T ss_pred             -----------ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhccc
Confidence                       233333 3445678888777643   3444444  4667888965 6655555543211          


Q ss_pred             -------CCCceEEEEeeCCCEEE-EecCCeEEEEecC
Q psy1242         494 -------FASPESVVMSREGVIVV-NYERGHIAAFTMN  523 (540)
Q Consensus       494 -------~~~v~~l~fspdg~~l~-s~~dg~I~lw~~~  523 (540)
                             .......++..-+.++. +|+|..|+.||..
T Consensus      1297 ~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1297 NDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             ccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence                   00111223322333444 4679999999976

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.76  E-value=5.2e-07  Score=95.35  Aligned_cols=156  Identities=18%  Similarity=0.123  Sum_probs=100.6

Q ss_pred             EEEEEEecCCCEEEEEEecC--CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-E
Q psy1242         339 HNCFVTTVDSRFLLACGFWD--NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-S  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~D--gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-s  415 (540)
                      +...+|+|||++|+.+...+  ..|.+||+.+++....                ..+.+.+.+++|+|    ||+.|+ +
T Consensus       192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~----------------~~~~~~~~~~~~sp----Dg~~l~~~  251 (417)
T TIGR02800       192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV----------------ASFPGMNGAPAFSP----DGSKLAVS  251 (417)
T ss_pred             eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe----------------ecCCCCccceEECC----CCCEEEEE
Confidence            45567899999854443322  4799999988765432                23455677889999    898775 4


Q ss_pred             EeCCC--cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCcEEEEecC
Q psy1242         416 GSADC--TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGP--VLVHTTFGDLLRSLDP  490 (540)
Q Consensus       416 gs~Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~--v~iw~~~g~~~~~l~~  490 (540)
                      .+.++  .|.+|++.+.            ....+..+.......+|+|+|+.|+.++. ++.  |.+++..+.....+..
T Consensus       252 ~~~~~~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~  319 (417)
T TIGR02800       252 LSKDGNPDIYVMDLDGK------------QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF  319 (417)
T ss_pred             ECCCCCccEEEEECCCC------------CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            55555  4777776542            23344455555567789999998876654 444  4455554433444443


Q ss_pred             CCCCCCceEEEEeeCCCEEEEec-CC---eEEEEecCCcEEE
Q psy1242         491 PSGFASPESVVMSREGVIVVNYE-RG---HIAAFTMNGNRLR  528 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~~-dg---~I~lw~~~g~~l~  528 (540)
                      +..  .+..++|+|+|++++... ++   .|.+|++++....
T Consensus       320 ~~~--~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~  359 (417)
T TIGR02800       320 RGG--YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER  359 (417)
T ss_pred             CCC--CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence            433  457889999999888743 32   6888888754333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.76  E-value=2e-06  Score=91.44  Aligned_cols=157  Identities=15%  Similarity=0.036  Sum_probs=97.6

Q ss_pred             EEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...+|+|||++|+++.+.+|  .|.++|+.+++.. .+               ..+....+...|+|    ||+.|+..+
T Consensus       246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~l---------------t~~~~~~~~~~~sp----Dg~~i~f~s  305 (430)
T PRK00178        246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RV---------------TNHPAIDTEPFWGK----DGRTLYFTS  305 (430)
T ss_pred             CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ec---------------ccCCCCcCCeEECC----CCCEEEEEE
Confidence            35789999998766666565  5777899877643 34               34555667789999    898876655


Q ss_pred             -CCCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEeCCCcEEEEecCC
Q psy1242         418 -ADCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGP--VLVHTTFGDLLRSLDPP  491 (540)
Q Consensus       418 -~Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~--v~iw~~~g~~~~~l~~~  491 (540)
                       .++.  |.++++.++           +. ..+..........+|+|+|+.|+..+. ++.  |.+++..+...+.+...
T Consensus       306 ~~~g~~~iy~~d~~~g-----------~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~  373 (430)
T PRK00178        306 DRGGKPQIYKVNVNGG-----------RA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT  373 (430)
T ss_pred             CCCCCceEEEEECCCC-----------CE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC
Confidence             3444  555555432           11 222211223345789999999887765 343  44556533334444432


Q ss_pred             CCCCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEEEeee
Q psy1242         492 SGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l~~~~  531 (540)
                       .  ......|+|||+.++...    ...|.+++++|+....+.
T Consensus       374 -~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~  414 (430)
T PRK00178        374 -S--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP  414 (430)
T ss_pred             -C--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence             1  123568999999888642    245788888887665554

>KOG1240|consensus

Probab=98.70  E-value=4.7e-07  Score=100.67  Aligned_cols=179  Identities=15%  Similarity=0.065  Sum_probs=115.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..++.+++..-++++||.||+|++|+.+.-      .++...-  ++..++.--...+.++...+    .++.+|.|+.
T Consensus      1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~------~~~~~s~--rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL------EGEGGSA--RSELTYSPEGSRVEKVTMCG----NGDQFAVSTK 1118 (1431)
T ss_pred             ccceeecCCCCceEEEecCCceEEEeeehhh------hcCccee--eeeEEEeccCCceEEEEecc----CCCeEEEEcC
Confidence            3455556665336999999999999998631      1111111  22233344567899999998    8999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCC-C-CEEEEEEcC-CCC-EEEEEeCCCcEEEEeC-CCcEEEEecCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHE-Q-PVTSVAISA-ELG-LVVSGSQLGPVLVHTT-FGDLLRSLDPPSG  493 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~-~-~V~~v~~sp-dg~-~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~  493 (540)
                      ||.|++.+++......    ...........+. + .|.+-++.. ++. .++.+..-+.+..|+. ...-..+++....
T Consensus      1119 DG~v~~~~id~~~~~~----~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSK----RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             CCeEEEEEcccccccc----ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence            9999999987522110    1112222222232 2 233334433 233 6777777778888865 3333444444333


Q ss_pred             CCCceEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEeeecC
Q psy1242         494 FASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHESHN  533 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~~~~  533 (540)
                      ...|++++.+|.+.+++.|. .|.+.+||+. +..+.+.+|.
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc
Confidence            33789999999999999974 6999999998 7777777643

>KOG1963|consensus

Probab=98.69  E-value=4.4e-07  Score=98.01  Aligned_cols=153  Identities=16%  Similarity=0.256  Sum_probs=115.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccC--Ce--EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDN--AR--IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~--g~--~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      ..|++++|.+++ +|+|..||.|.+|.--.  +.  ....+               .-|.+.|++++|++    +|.+|+
T Consensus       208 ~t~~~~spn~~~-~Aa~d~dGrI~vw~d~~~~~~~~t~t~l---------------HWH~~~V~~L~fS~----~G~~Ll  267 (792)
T KOG1963|consen  208 ITCVALSPNERY-LAAGDSDGRILVWRDFGSSDDSETCTLL---------------HWHHDEVNSLSFSS----DGAYLL  267 (792)
T ss_pred             ceeEEeccccce-EEEeccCCcEEEEeccccccccccceEE---------------EecccccceeEEec----CCceEe
Confidence            688999999996 79999999999995322  11  12233               67999999999999    999999


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG  493 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~  493 (540)
                      ||+..|-+-+|.+.+..            .+-|..-.++|..+.+|||+.+.+....|..|.+-.. +.....++.+...
T Consensus       268 SGG~E~VLv~Wq~~T~~------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~  335 (792)
T KOG1963|consen  268 SGGREGVLVLWQLETGK------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP  335 (792)
T ss_pred             ecccceEEEEEeecCCC------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence            99999999999987732            3455667889999999999999999999999876422 4444444433221


Q ss_pred             C---------CCceEEEEee-CCCEEEEecCCeEEEEecC
Q psy1242         494 F---------ASPESVVMSR-EGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       494 ~---------~~v~~l~fsp-dg~~l~s~~dg~I~lw~~~  523 (540)
                      .         .-.+.++++| .+..+..+..|+|.+||+-
T Consensus       336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~  375 (792)
T KOG1963|consen  336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY  375 (792)
T ss_pred             CCccccccccccceeEEEcCCCCceeecCCCceEEEEecc
Confidence            1         0246788898 4445556888999999975

>KOG3881|consensus

Probab=98.66  E-value=7.1e-07  Score=88.36  Aligned_cols=138  Identities=13%  Similarity=0.066  Sum_probs=105.4

Q ss_pred             ceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         334 KLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       334 ~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                      ..+|+...+.|-+.  .. -||++..-+.||+||.+.++ ++..+               .--..+++++...|    +|
T Consensus       200 rVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YDt~~qRRPV~~f---------------d~~E~~is~~~l~p----~g  259 (412)
T KOG3881|consen  200 RVPVWITDIRFLEGSPNY-KFATITRYHQVRLYDTRHQRRPVAQF---------------DFLENPISSTGLTP----SG  259 (412)
T ss_pred             eeeeeeccceecCCCCCc-eEEEEecceeEEEecCcccCcceeEe---------------ccccCcceeeeecC----CC
Confidence            34566777777766  55 47999999999999998654 55555               44577899999999    99


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD  489 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~  489 (540)
                      +.|++|..-+.+..+|++.+.          -....+.|-.+.|++|..+|.++++|+|+-|..|+|++. +.+++....
T Consensus       260 n~Iy~gn~~g~l~~FD~r~~k----------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  260 NFIYTGNTKGQLAKFDLRGGK----------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             cEEEEecccchhheecccCce----------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            999999999999999998732          122347888999999999999999999999999999976 444444333


Q ss_pred             CCCCCCCceEEEEee
Q psy1242         490 PPSGFASPESVVMSR  504 (540)
Q Consensus       490 ~~~~~~~v~~l~fsp  504 (540)
                      ...   .+++|.+.+
T Consensus       330 vKs---~lt~il~~~  341 (412)
T KOG3881|consen  330 VKS---RLTFILLRD  341 (412)
T ss_pred             hhc---cccEEEecC
Confidence            222   345565544

>KOG2041|consensus

Probab=98.66  E-value=7.3e-08  Score=101.31  Aligned_cols=174  Identities=16%  Similarity=0.179  Sum_probs=128.5

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      +.-.|++|+....+ ||+|+.||-++|-.+.+...-...++-.+..+-.+.+++.||.+.|..+.|+.    ..+.|.|+
T Consensus        15 vkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe----~~QKLTtS   89 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE----NNQKLTTS   89 (1189)
T ss_pred             ceEEEEEEcccCCe-EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc----cccccccc
Confidence            34689999999886 79999999999998765443322223222223356788899999999999998    78899999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEE--EecCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLR--SLDPPSGF  494 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~--~l~~~~~~  494 (540)
                      ..+|.|.||-+-.++.-         --.+-...++.|.+++|+.||..++..-.||.|+|=..+|..+.  .+++.   
T Consensus        90 Dt~GlIiVWmlykgsW~---------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~---  157 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWC---------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ---  157 (1189)
T ss_pred             CCCceEEEEeeecccHH---------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh---
Confidence            99999999988764321         01112335667899999999999999999999998777666543  33332   


Q ss_pred             CCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEEE
Q psy1242         495 ASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLR  528 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~  528 (540)
                       ....+.|++|.+.+..+ ..|.+++||-+|....
T Consensus       158 -~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~  191 (1189)
T KOG2041|consen  158 -LLAHVLWSEDLEQALFKKANGETHLYDNQGNFER  191 (1189)
T ss_pred             -eccceeecccHHHHHhhhcCCcEEEecccccHHH
Confidence             23578899998877664 4689999998876443

>KOG2321|consensus

Probab=98.64  E-value=3.5e-07  Score=94.37  Aligned_cols=152  Identities=20%  Similarity=0.276  Sum_probs=111.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-----ceEEEEeccCccCCCcEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-----VVTCLSRSECNITADCFI  413 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-----~Vt~l~~sp~~~~dg~~l  413 (540)
                      .+++.+++-.. ||++|+.||.|..||.++...+.++..... |        ..|.+     .|++++|+-    +|-.+
T Consensus       178 lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v--------~s~pg~~~~~svTal~F~d----~gL~~  243 (703)
T KOG2321|consen  178 LNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASS-V--------NSHPGGDAAPSVTALKFRD----DGLHV  243 (703)
T ss_pred             ceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccc-c--------CCCccccccCcceEEEecC----CceeE
Confidence            56677788877 789999999999999998877776633221 1        23433     499999997    79999


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcCCC--CEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISAEL--GLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg--~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      +.|..+|.|.|+|++..+           |+. ...|  ..+|..+.|.+.+  ..++|.. ...++||+. +|+....+
T Consensus       244 aVGts~G~v~iyDLRa~~-----------pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asi  310 (703)
T KOG2321|consen  244 AVGTSTGSVLIYDLRASK-----------PLL-VKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASI  310 (703)
T ss_pred             EeeccCCcEEEEEcccCC-----------cee-ecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeec
Confidence            999999999999998733           322 2344  4578888997763  3444432 345699987 89888887


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEec-CCeEEEE
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNYE-RGHIAAF  520 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw  520 (540)
                      ....   .+..+|+-|++.+++++. ++.+..|
T Consensus       311 Ept~---~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  311 EPTS---DLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             cccC---CcCceeeecCCceEEEecCCCcceeE
Confidence            6544   478999999988888864 3445444

>KOG0974|consensus

Probab=98.60  E-value=8.8e-07  Score=97.29  Aligned_cols=152  Identities=19%  Similarity=0.187  Sum_probs=114.9

Q ss_pred             ecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE-----EEEeccCccCCCcEEEEEeCC
Q psy1242         345 TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT-----CLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       345 spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt-----~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      ..+.++ ++.+..++++.+||...+.....+                .+...++     -+-.++    +.-++++|+.-
T Consensus        96 ~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~i----------------~~~er~~l~~~~~~g~s~----~~~~i~~gsv~  154 (967)
T KOG0974|consen   96 FEENKK-IALVTSRNSLLIRDSKNSSVLSKI----------------QSDERCTLYSSLIIGDSA----EELYIASGSVF  154 (967)
T ss_pred             hhhcce-EEEEEcCceEEEEecccCceehhc----------------CCCceEEEEeEEEEeccC----cEEEEEecccc
Confidence            345554 677788999999999877666554                2222221     123455    66789999999


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE-EecCCCCCCCc
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR-SLDPPSGFASP  497 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~-~l~~~~~~~~v  497 (540)
                      +.|.+|+... .         ..+. .+.||++.+..+.++-||++++|+|.|.++++|.. +++.+. +.-+|..  .|
T Consensus       155 ~~iivW~~~~-d---------n~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa--Rv  221 (967)
T KOG0974|consen  155 GEIIVWKPHE-D---------NKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA--RV  221 (967)
T ss_pred             ccEEEEeccc-c---------CCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc--ee
Confidence            9999999763 1         1233 68899999999999999999999999999999965 555444 5556776  78


Q ss_pred             eEEEEeeCCCEEEEecCCeEEEEecCCcEEEeee
Q psy1242         498 ESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       498 ~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~~  531 (540)
                      +.++|.|+ .++..+.|-+.++|+.+|..|..+.
T Consensus       222 w~~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~  254 (967)
T KOG0974|consen  222 WACCFLPN-RIITVGEDCTCRVWGVNGTQLEVYD  254 (967)
T ss_pred             EEEEeccc-eeEEeccceEEEEEecccceehhhh
Confidence            99999999 4444578999999999988887553

>KOG1334|consensus

Probab=98.58  E-value=2.7e-07  Score=93.50  Aligned_cols=180  Identities=16%  Similarity=0.114  Sum_probs=122.2

Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEe-eccCcceEEEEeccCccCCCcEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQII-FGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l-~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ..|.-..+++.|.+.+.+|+|+.|--+++||.+.-.....    .+.+..-+-..+ ....-.|+|++++.    ++.-|
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~~f~p~hl~~d~~v~ITgl~Ysh----~~sEl  351 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN----NGVLDKFCPHHLVEDDPVNITGLVYSH----DGSEL  351 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc----cchhhhcCCccccccCcccceeEEecC----Cccce
Confidence            3567788889999998899999999999999764221100    000000011111 12234689999997    67777


Q ss_pred             EEEeCCCcEEEEEcCCCccccc-C-CCCCCcceEEeccCCC--CEEEEEE-cCCCCEEEEEeCCCcEEEEeC-CCcEEEE
Q psy1242         414 ASGSADCTVLLWHWNARTQSIV-G-ETDTPTPRATLTGHEQ--PVTSVAI-SAELGLVVSGSQLGPVLVHTT-FGDLLRS  487 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~-~-~~~~~~~~~~l~~h~~--~V~~v~~-spdg~~lasgs~Dg~v~iw~~-~g~~~~~  487 (540)
                      +++-.|--|.++.-..+.+... . ........+.++||.+  .|.++-| -|...+++|||.-|.|.||.. ++++++-
T Consensus       352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~  431 (559)
T KOG1334|consen  352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF  431 (559)
T ss_pred             eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence            7777788899985332221000 0 0000112234789965  5667755 467789999999999999987 7888888


Q ss_pred             ecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         488 LDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       488 l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      +.+...  .|+||.=+|.-.+||+ |-|.-|+||++-+
T Consensus       432 MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  432 MEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             hhcccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence            887666  6899999999999998 5689999999853

>KOG1272|consensus

Probab=98.58  E-value=2.3e-07  Score=93.46  Aligned_cols=166  Identities=12%  Similarity=0.045  Sum_probs=127.4

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEec----------ccceee--------------eeeEEEeeccCc
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFG----------HYGVVT--------------SRIVQIIFGHYG  395 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~----------~~~~v~--------------~~~~~~l~~h~~  395 (540)
                      ..+.++.+|++| +.|+.-|.|..+|..++++...+..          |..-..              +..+..+..| .
T Consensus       133 Y~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~-~  210 (545)
T KOG1272|consen  133 YHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH-I  210 (545)
T ss_pred             eeeeecCCccEE-EecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-C
Confidence            345678899975 5666789999999998887766521          111000              0122222222 4


Q ss_pred             ceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy1242         396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPV  475 (540)
Q Consensus       396 ~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v  475 (540)
                      .|..+.|-|    ---+|++++..|-++--|+.+           ++.+..+....+.+..++-+|-...+-.|...|+|
T Consensus       211 ~v~rLeFLP----yHfLL~~~~~~G~L~Y~DVS~-----------GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtV  275 (545)
T KOG1272|consen  211 RVARLEFLP----YHFLLVAASEAGFLKYQDVST-----------GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTV  275 (545)
T ss_pred             chhhhcccc----hhheeeecccCCceEEEeech-----------hhhhHHHHccCCccchhhcCCccceEEEcCCCceE
Confidence            677778888    555788899999999999887           56777787778888899999999999999999999


Q ss_pred             EEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         476 LVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       476 ~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      -+|.. ..+++..+-+|.+  +|.+|++.++|+++++ |-|..++|||+..
T Consensus       276 SlWSP~skePLvKiLcH~g--~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  276 SLWSPNSKEPLVKILCHRG--PVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             EecCCCCcchHHHHHhcCC--CcceEEECCCCcEEeecccccceeEeeecc
Confidence            99977 4566777888888  8999999999999998 6799999999873

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=4.7e-06  Score=88.57  Aligned_cols=156  Identities=17%  Similarity=0.087  Sum_probs=97.6

Q ss_pred             EEEEEEecCCCEEEEEEecC--CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-E
Q psy1242         339 HNCFVTTVDSRFLLACGFWD--NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-S  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~D--gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-s  415 (540)
                      +...+|+|||++|+.+...+  ..|.+|++.+|+... +               ....+.+...+|+|    ||+.|+ +
T Consensus       201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l---------------~~~~g~~~~~~~Sp----DG~~la~~  260 (430)
T PRK00178        201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I---------------TNFEGLNGAPAWSP----DGSKLAFV  260 (430)
T ss_pred             eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c---------------cCCCCCcCCeEECC----CCCEEEEE
Confidence            45668899999865544333  358889998876543 2               22334456789999    998876 4


Q ss_pred             EeCCC--cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCc--EEEEeC-CCcEEEEec
Q psy1242         416 GSADC--TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGP--VLVHTT-FGDLLRSLD  489 (540)
Q Consensus       416 gs~Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~--v~iw~~-~g~~~~~l~  489 (540)
                      .+.++  .|.+||+.++            ....+..+........|+|||+.|+..+ .+|.  |.+++. +++. ..+.
T Consensus       261 ~~~~g~~~Iy~~d~~~~------------~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt  327 (430)
T PRK00178        261 LSKDGNPEIYVMDLASR------------QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVT  327 (430)
T ss_pred             EccCCCceEEEEECCCC------------CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEee
Confidence            55565  4666676642            2344555655667789999999776655 3444  444454 4543 3332


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEec--CC--eEEEEecCCcEEEe
Q psy1242         490 PPSGFASPESVVMSREGVIVVNYE--RG--HIAAFTMNGNRLRH  529 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~~--dg--~I~lw~~~g~~l~~  529 (540)
                      ....  .....+|+|+|+.|+...  ++  .|.+||+.+.....
T Consensus       328 ~~~~--~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~  369 (430)
T PRK00178        328 FVGN--YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI  369 (430)
T ss_pred             cCCC--CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence            2222  234678999999988732  23  57788877543333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=5.9e-06  Score=88.19  Aligned_cols=154  Identities=14%  Similarity=0.049  Sum_probs=94.6

Q ss_pred             EEEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-  415 (540)
                      +.+..|+|||++|+.+...++  .|.++|+.+++... +               ....+.....+|+|    ||+.|+. 
T Consensus       220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l---------------t~~~g~~~~~~wSP----DG~~La~~  279 (448)
T PRK04792        220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V---------------TSFPGINGAPRFSP----DGKKLALV  279 (448)
T ss_pred             ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e---------------cCCCCCcCCeeECC----CCCEEEEE
Confidence            456788999998655544444  47888988776532 2               11223345789999    9987764 


Q ss_pred             EeCCCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--eC-CCcEEEEec
Q psy1242         416 GSADCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVH--TT-FGDLLRSLD  489 (540)
Q Consensus       416 gs~Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw--~~-~g~~~~~l~  489 (540)
                      .+.++.  |.++|+.++            ....+..+.......+|+|||+.|+..+ .+|...||  +. +++. ..+.
T Consensus       280 ~~~~g~~~Iy~~dl~tg------------~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt  346 (448)
T PRK04792        280 LSKDGQPEIYVVDIATK------------ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLT  346 (448)
T ss_pred             EeCCCCeEEEEEECCCC------------CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEe
Confidence            566776  555555431            2344555555667889999999876655 45555554  44 4543 3332


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEec--CC--eEEEEecCCcEE
Q psy1242         490 PPSGFASPESVVMSREGVIVVNYE--RG--HIAAFTMNGNRL  527 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~~--dg--~I~lw~~~g~~l  527 (540)
                      ....  .....+|+|||+.|+...  ++  .|.++++++..+
T Consensus       347 ~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        347 FEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             cCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            2222  224578999999887632  33  455667664433

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.51  E-value=5.4e-05  Score=78.03  Aligned_cols=158  Identities=16%  Similarity=0.189  Sum_probs=102.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCe--EEE--EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR--IVQ--IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~--~~~--~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      ..++.++|||++++++.-....|.+|+++...  +..  .+.              ......-..++|+|    +++++.
T Consensus       146 ~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~--------------~~~G~GPRh~~f~p----dg~~~Y  207 (345)
T PF10282_consen  146 PHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK--------------VPPGSGPRHLAFSP----DGKYAY  207 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE--------------CSTTSSEEEEEE-T----TSSEEE
T ss_pred             ceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc--------------cccCCCCcEEEEcC----CcCEEE
Confidence            56888999999988877677789999997654  322  110              13345678899999    888875


Q ss_pred             EE-eCCCcEEEEEcCCCcccccCCCCCCcceEEecc------CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC---CCc
Q psy1242         415 SG-SADCTVLLWHWNARTQSIVGETDTPTPRATLTG------HEQPVTSVAISAELGLVVSGS-QLGPVLVHTT---FGD  483 (540)
Q Consensus       415 sg-s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~---~g~  483 (540)
                      .. -.+++|.++++......       .+.++.+..      .......|+++|||++|.++. ..+.|-++..   +|+
T Consensus       208 v~~e~s~~v~v~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~  280 (345)
T PF10282_consen  208 VVNELSNTVSVFDYDPSDGS-------LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT  280 (345)
T ss_dssp             EEETTTTEEEEEEEETTTTE-------EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred             EecCCCCcEEEEeecccCCc-------eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence            55 46889999998732221       122222221      122678899999999876655 4566777643   454


Q ss_pred             E--EEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242         484 L--LRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       484 ~--~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~  523 (540)
                      +  +..+.....  .+..++++|+|++|+++  .++.|.+|+++
T Consensus       281 l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  281 LTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             eEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            4  334433333  57999999999999885  36789999774

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3914|consensus

Probab=98.51  E-value=1e-06  Score=87.66  Aligned_cols=159  Identities=11%  Similarity=0.104  Sum_probs=99.4

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeE-EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE---
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARI-VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG---  416 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~-~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg---  416 (540)
                      ....+++++ |+|++..+....+++...... .+.+            ..+.. ...-+.+.+..    +......+   
T Consensus        67 ~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~------------~~~~v-~~~~~ai~~~~----~~~sv~v~dka  128 (390)
T KOG3914|consen   67 LVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLL------------DVSCV-PKRPTAISFIR----EDTSVLVADKA  128 (390)
T ss_pred             ccccCCCce-EEEEEeCCCceEEEEEecCCCcceee------------eEeec-ccCcceeeeee----ccceEEEEeec
Confidence            344566777 688888788777777654322 1111            00011 11122333332    23333333   


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE-EeCCCcEEEEe-cCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSL-DPPSGF  494 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i-w~~~g~~~~~l-~~~~~~  494 (540)
                      +....+.+|....            .+...+-||-.-++.|+|+||+++|+++.+|+.|+| |-.....+.++ -+|.. 
T Consensus       129 gD~~~~di~s~~~------------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e-  195 (390)
T KOG3914|consen  129 GDVYSFDILSADS------------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE-  195 (390)
T ss_pred             CCceeeeeecccc------------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHh-
Confidence            3444555555432            123445699999999999999999999999999998 54433333333 45777 


Q ss_pred             CCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee
Q psy1242         495 ASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~  531 (540)
                       -|..++.-++-.++-+|+|++|++||+. |+.|.++.
T Consensus       196 -FVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  196 -FVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             -heeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence             5789998877664555789999999986 88886653

>KOG1409|consensus

Probab=98.48  E-value=5e-06  Score=81.25  Aligned_cols=171  Identities=19%  Similarity=0.243  Sum_probs=118.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCC-eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNA-RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g-~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.++.+.++.+. |++|-..|++.-+.+..- ....            ..+.+..|...|..+-|+.    ..+++++.+
T Consensus        71 ~~~~~y~~e~~~-L~vg~~ngtvtefs~sedfnkm~------------~~r~~~~h~~~v~~~if~~----~~e~V~s~~  133 (404)
T KOG1409|consen   71 CSAMEYVSESRR-LYVGQDNGTVTEFALSEDFNKMT------------FLKDYLAHQARVSAIVFSL----THEWVLSTG  133 (404)
T ss_pred             ceEeeeeccceE-EEEEEecceEEEEEhhhhhhhcc------------hhhhhhhhhcceeeEEecC----CceeEEEec
Confidence            566677777775 688888888877765421 1110            1122367888888888887    677888888


Q ss_pred             CCCcEEEEEcCCCcccc--------------------cC-----------CCCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242         418 ADCTVLLWHWNARTQSI--------------------VG-----------ETDTPTPRATLTGHEQPVTSVAISAELGLV  466 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~--------------------~~-----------~~~~~~~~~~l~~h~~~V~~v~~spdg~~l  466 (540)
                      .|..+. |......+..                    ++           ......++.++.+|.+.+++++|.+..+++
T Consensus       134 ~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L  212 (404)
T KOG1409|consen  134 KDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL  212 (404)
T ss_pred             cccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence            886654 4432111110                    00           012245677889999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCc--EEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEEe
Q psy1242         467 VSGSQLGPVLVHTTFGD--LLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRH  529 (540)
Q Consensus       467 asgs~Dg~v~iw~~~g~--~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~~  529 (540)
                      .||..|..+.+|+.-|.  ....+.+|..  .|..+...+.-+.+.+ +.||.|.+|+.+-+...+
T Consensus       213 fSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~et  276 (404)
T KOG1409|consen  213 FSGASDHSVIMWDIGGRKGTAYELQGHND--KVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVET  276 (404)
T ss_pred             EeccccCceEEEeccCCcceeeeeccchh--hhhhhhhhhhheeeeeccCCCeEEEEeccceeecC
Confidence            99999999999987443  4566777777  5677777666666665 779999999998665544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=1e-05  Score=85.76  Aligned_cols=160  Identities=14%  Similarity=-0.017  Sum_probs=95.7

Q ss_pred             EEEEecCCCEE--EEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         341 CFVTTVDSRFL--LACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       341 ~~~~spdg~~l--lasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      .-+|+|||+.+  +.+...+|  .|.+.++.+|+..+..                ...+.....+|+|    ||+.|+..
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt----------------~~~g~~~~p~wSP----DG~~Laf~  248 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL----------------ALQGNQLMPTFSP----RKKLLAFI  248 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee----------------cCCCCccceEECC----CCCEEEEE
Confidence            34789999752  22444444  4677788777543322                2344456789999    99888765


Q ss_pred             eC-CC----cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEe--C--CCcEEE
Q psy1242         417 SA-DC----TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHT--T--FGDLLR  486 (540)
Q Consensus       417 s~-Dg----tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~--~--~g~~~~  486 (540)
                      +. +|    .+.+|++.....        +.+.....++.......+|+|||+.|+..+ .+|...+|.  .  .+...+
T Consensus       249 s~~~g~~di~~~~~~~~~g~~--------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~  320 (428)
T PRK01029        249 SDRYGNPDLFIQSFSLETGAI--------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR  320 (428)
T ss_pred             ECCCCCcceeEEEeecccCCC--------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence            53 33    344466543210        122333333334456789999999877665 567666653  2  233344


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEEe-c---CCeEEEEecCCcEEEee
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVNY-E---RGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s~-~---dg~I~lw~~~g~~l~~~  530 (540)
                      .+.....  .+...+|||||+.|+.. .   ...|.+|++.+.....+
T Consensus       321 ~lt~~~~--~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L  366 (428)
T PRK01029        321 LLTKKYR--NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL  366 (428)
T ss_pred             EeccCCC--CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc
Confidence            4544443  45788999999988863 2   24689999875444433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.46  E-value=7.2e-05  Score=77.59  Aligned_cols=155  Identities=15%  Similarity=0.123  Sum_probs=100.3

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-CC
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-AD  419 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~D  419 (540)
                      .+.++|||+++++ ++.||.|.++|+.+++.+.++               .. .....++++|+    ||++++++. .+
T Consensus        41 ~~~~s~Dgr~~yv-~~rdg~vsviD~~~~~~v~~i---------------~~-G~~~~~i~~s~----DG~~~~v~n~~~   99 (369)
T PF02239_consen   41 GLKFSPDGRYLYV-ANRDGTVSVIDLATGKVVATI---------------KV-GGNPRGIAVSP----DGKYVYVANYEP   99 (369)
T ss_dssp             EEE-TT-SSEEEE-EETTSEEEEEETTSSSEEEEE---------------E--SSEEEEEEE------TTTEEEEEEEET
T ss_pred             EEEecCCCCEEEE-EcCCCeEEEEECCcccEEEEE---------------ec-CCCcceEEEcC----CCCEEEEEecCC
Confidence            3457999998655 567999999999999999888               32 23467899999    999998776 68


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEecc-------CCCCEEEEEEcCCCCEEEEEeCC-CcEEEEeC-CCc--EEEEe
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTG-------HEQPVTSVAISAELGLVVSGSQL-GPVLVHTT-FGD--LLRSL  488 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-------h~~~V~~v~~spdg~~lasgs~D-g~v~iw~~-~g~--~~~~l  488 (540)
                      +++.++|..+           .++++.+..       ....+.+|.-++....++..-.| +.|.+-+. +.+  ....+
T Consensus       100 ~~v~v~D~~t-----------le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i  168 (369)
T PF02239_consen  100 GTVSVIDAET-----------LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI  168 (369)
T ss_dssp             TEEEEEETTT-------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred             CceeEecccc-----------ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence            9999999876           455665543       23467788888888866655554 66644332 323  23344


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcEEEee
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~l~~~  530 (540)
                      ... .  .+....|+|+|++++.+  .++.|-++|.. ++++...
T Consensus       169 ~~g-~--~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  169 KVG-R--FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             E---T--TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ccc-c--cccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            332 2  46889999999987664  45789999987 4444443

...

>KOG1354|consensus

Probab=98.45  E-value=6.6e-06  Score=80.42  Aligned_cols=180  Identities=14%  Similarity=0.130  Sum_probs=116.7

Q ss_pred             EEEEEEecCCCE-EEEEEecCCcEEEEEccCCeEE--------------------EEEecccceeeeeeEEEe-eccCcc
Q psy1242         339 HNCFVTTVDSRF-LLACGFWDNSFRVFSTDNARIV--------------------QIIFGHYGVVTSRIVQII-FGHYGV  396 (540)
Q Consensus       339 ~~~~~~spdg~~-llasgs~Dgsv~iwd~~~g~~~--------------------~~l~~~~~~v~~~~~~~l-~~h~~~  396 (540)
                      ++.+.|.+++.. .+.....|.+|++|.+......                    ..+..|...+...+.+.+ .+|.--
T Consensus        87 inkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyh  166 (433)
T KOG1354|consen   87 INKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYH  166 (433)
T ss_pred             hhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeE
Confidence            445556655432 2334456999999988643221                    122233333344444444 478899


Q ss_pred             eEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC-----CCCEEEEEEcCCC-CEEEEEe
Q psy1242         397 VTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-----EQPVTSVAISAEL-GLVVSGS  470 (540)
Q Consensus       397 Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-----~~~V~~v~~spdg-~~lasgs  470 (540)
                      |++|+++.    |++.++++. |-.|.+|.+....+..        -+--++.+     +..|++..|+|.. .+++-.|
T Consensus       167 iNSIS~Ns----D~Et~lSAD-dLRINLWnlei~d~sF--------nIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  167 INSISVNS----DKETFLSAD-DLRINLWNLEIIDQSF--------NIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             eeeeeecC----ccceEeecc-ceeeeeccccccCCce--------eEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence            99999998    898888764 7899999987533211        11222223     3467888999964 5778888


Q ss_pred             CCCcEEEEeCCCcEE-----EEecCCCCC----------CCceEEEEeeCCCEEEEecCCeEEEEecC--CcEEEeee
Q psy1242         471 QLGPVLVHTTFGDLL-----RSLDPPSGF----------ASPESVVMSREGVIVVNYERGHIAAFTMN--GNRLRHES  531 (540)
Q Consensus       471 ~Dg~v~iw~~~g~~~-----~~l~~~~~~----------~~v~~l~fspdg~~l~s~~dg~I~lw~~~--g~~l~~~~  531 (540)
                      ..|+|++.+.....+     ..+..+...          ..|..+.|+++|+++++-+=-+|++||++  .+.+.+..
T Consensus       234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~  311 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYP  311 (433)
T ss_pred             CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEe
Confidence            899999976532111     122222210          15788999999999999877999999986  67777665

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.42  E-value=8.7e-07  Score=59.92  Aligned_cols=37  Identities=32%  Similarity=0.574  Sum_probs=34.0

Q ss_pred             eEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         386 IVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       386 ~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      ++.++.+|.+.|++|+|+|    ++.+|+||+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~----~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSP----DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEET----TSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEec----ccccceeeCCCCEEEEEC
Confidence            4455699999999999999    999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4497|consensus

Probab=98.41  E-value=2.4e-06  Score=82.89  Aligned_cols=136  Identities=10%  Similarity=0.104  Sum_probs=98.1

Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-EeCCC
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-GSADC  420 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-gs~Dg  420 (540)
                      +.|||+|++ +|+.+ +..+.|-|..+-+..+.+                .--+.|.-+.|..    |..+++. ...|+
T Consensus        14 c~fSp~g~y-iAs~~-~yrlviRd~~tlq~~qlf----------------~cldki~yieW~a----ds~~ilC~~yk~~   71 (447)
T KOG4497|consen   14 CSFSPCGNY-IASLS-RYRLVIRDSETLQLHQLF----------------LCLDKIVYIEWKA----DSCHILCVAYKDP   71 (447)
T ss_pred             eeECCCCCe-eeeee-eeEEEEeccchhhHHHHH----------------HHHHHhhheeeec----cceeeeeeeeccc
Confidence            356999997 68876 457888888776654433                2246778889987    7776665 46788


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCcEEEEecCCCCCCCceE
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVV-SGSQLGPVLVHTTFGDLLRSLDPPSGFASPES  499 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la-sgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~  499 (540)
                      .|.+|++..           ++-...+......+..++|||||+.|+ +..-|-.|.||....+...-++.++.  .+..
T Consensus        72 ~vqvwsl~Q-----------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~--~~kg  138 (447)
T KOG4497|consen   72 KVQVWSLVQ-----------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT--NVKG  138 (447)
T ss_pred             eEEEEEeec-----------ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc--Ccee
Confidence            999999875           334456667778899999999997654 55567788899765444455555555  3578


Q ss_pred             EEEeeCCCEEEEe
Q psy1242         500 VVMSREGVIVVNY  512 (540)
Q Consensus       500 l~fspdg~~l~s~  512 (540)
                      ++|+|||++.+..
T Consensus       139 ~~f~~dg~f~ai~  151 (447)
T KOG4497|consen  139 YAFHPDGQFCAIL  151 (447)
T ss_pred             EEECCCCceeeee
Confidence            8888888887754

>KOG3914|consensus

Probab=98.40  E-value=1.8e-06  Score=85.89  Aligned_cols=102  Identities=25%  Similarity=0.315  Sum_probs=79.3

Q ss_pred             ecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccccc
Q psy1242         356 FWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIV  435 (540)
Q Consensus       356 s~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~  435 (540)
                      +....+.+|....+.+...+                ||-..++.|+|+|    |+++|+|+.+|..|+|-.....     
T Consensus       129 gD~~~~di~s~~~~~~~~~l----------------GhvSml~dVavS~----D~~~IitaDRDEkIRvs~ypa~-----  183 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCEPIL----------------GHVSMLLDVAVSP----DDQFIITADRDEKIRVSRYPAT-----  183 (390)
T ss_pred             CCceeeeeecccccCcchhh----------------hhhhhhheeeecC----CCCEEEEecCCceEEEEecCcc-----
Confidence            34556667766655555444                9999999999999    9999999999999998775431     


Q ss_pred             CCCCCCcceEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec
Q psy1242         436 GETDTPTPRAT-LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD  489 (540)
Q Consensus       436 ~~~~~~~~~~~-l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~  489 (540)
                            ..+.. ..||+.-|..+++-++ +.|+|||.|+++++|+. +|+++.++.
T Consensus       184 ------f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  184 ------FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ------cchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence                  12222 3689999999998765 56899999999999976 888876654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.39  E-value=9.7e-05  Score=86.48  Aligned_cols=181  Identities=8%  Similarity=-0.017  Sum_probs=109.7

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEEEEeC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSA  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs~  418 (540)
                      ..++++|++..++++.+.++.|++||..++... .+.+........-.......-...+.|+++|    +|+ .+++.+.
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp----dG~~LYVADs~  760 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP----DLKELYIADSE  760 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC----CCCEEEEEECC
Confidence            467889966567888888999999999877543 3311110000000000001123456799999    887 4556667


Q ss_pred             CCcEEEEEcCCCcccccCC--CCCCcceEEecc--------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEe
Q psy1242         419 DCTVLLWHWNARTQSIVGE--TDTPTPRATLTG--------HEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL  488 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~--~~~~~~~~~l~~--------h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l  488 (540)
                      +++|++||+.+........  .........+-.        .-..-.+++++++|.++++-+.++.|++|+..+..+.++
T Consensus       761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            8999999987533111100  000000001100        011235889999999999999999999998755554444


Q ss_pred             cCCCC------------CCCceEEEEeeCCCEEEE-ecCCeEEEEecCCc
Q psy1242         489 DPPSG------------FASPESVVMSREGVIVVN-YERGHIAAFTMNGN  525 (540)
Q Consensus       489 ~~~~~------------~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~  525 (540)
                      .+...            ...+..|+++++|+++++ ..+++|++|+++..
T Consensus       841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            33210            114688999999997776 56789999999854

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.38  E-value=0.00026  Score=70.22  Aligned_cols=165  Identities=12%  Similarity=0.098  Sum_probs=106.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      +.+..++|++++++++.-..-.|.+|++..|++...-+..            -.-...-..|.|+|    ++++..... 
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~------------v~~G~GPRHi~FHp----n~k~aY~v~E  210 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE------------VKPGAGPRHIVFHP----NGKYAYLVNE  210 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc------------cCCCCCcceEEEcC----CCcEEEEEec
Confidence            6677789999987777656678999999988765433111            12234567899999    999886655 


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCC-cEEEE--eC-CCcEEEEecC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLG-PVLVH--TT-FGDLLRSLDP  490 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg-~v~iw--~~-~g~~~~~l~~  490 (540)
                      .+++|.+|..+...++.    +..+.+.++.   ......-.|.+++||++|.++.+.- .|-++  +. +|++...-..
T Consensus       211 L~stV~v~~y~~~~g~~----~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~  286 (346)
T COG2706         211 LNSTVDVLEYNPAVGKF----EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT  286 (346)
T ss_pred             cCCEEEEEEEcCCCceE----EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence            69999999988743221    1111222221   1244677899999999988776432 34444  33 4443222111


Q ss_pred             CCCCCCceEEEEeeCCCEEEEec--CCeEEEEecC
Q psy1242         491 PSGFASPESVVMSREGVIVVNYE--RGHIAAFTMN  523 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~~--dg~I~lw~~~  523 (540)
                      ......+....|+++|++|+++.  +..|.+|.++
T Consensus       287 ~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         287 PTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             ccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            22212478999999999998853  4679999876

>KOG2315|consensus

Probab=98.33  E-value=3.5e-05  Score=79.88  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=109.3

Q ss_pred             EEEEEEecCCCEEEEEEec--C---------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         339 HNCFVTTVDSRFLLACGFW--D---------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~--D---------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                      ...+.|++-|.-||+.++.  |         .++.+.+++...+.-.+                ...++|.++.|+|   
T Consensus       220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L----------------~k~GPVhdv~W~~---  280 (566)
T KOG2315|consen  220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL----------------LKEGPVHDVTWSP---  280 (566)
T ss_pred             eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec----------------CCCCCceEEEECC---
Confidence            3455667766665554432  2         24666665522222222                3478999999999   


Q ss_pred             CCCcEEEE--EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeC-C
Q psy1242         408 TADCFIAS--GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ---LGPVLVHTT-F  481 (540)
Q Consensus       408 ~dg~~l~s--gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~---Dg~v~iw~~-~  481 (540)
                       +|+.++.  |-.-..+.|+|++.            .++..+  -+++-+++-|+|.|++|+.++-   -|.+-|||. +
T Consensus       281 -s~~EF~VvyGfMPAkvtifnlr~------------~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  281 -SGREFAVVYGFMPAKVTIFNLRG------------KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             -CCCEEEEEEecccceEEEEcCCC------------CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence             7866644  44577899999763            344444  4566778999999999888774   477899987 6


Q ss_pred             CcEEEEecCCCCCCCceEEEEeeCCCEEEEec-------CCeEEEEecCCcEEEeee
Q psy1242         482 GDLLRSLDPPSGFASPESVVMSREGVIVVNYE-------RGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       482 g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-------dg~I~lw~~~g~~l~~~~  531 (540)
                      .+++..+.....    +-..|+|||++++++.       |+.++||+..|.++....
T Consensus       346 ~K~i~~~~a~~t----t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~  398 (566)
T KOG2315|consen  346 RKLIAKFKAANT----TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM  398 (566)
T ss_pred             hhhccccccCCc----eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh
Confidence            677777776554    5689999999999863       788999999999886544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.33  E-value=1.3e-06  Score=58.97  Aligned_cols=38  Identities=29%  Similarity=0.388  Sum_probs=36.0

Q ss_pred             cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         442 TPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       442 ~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      +++.++.+|...|++++|+|++.+|++|+.|+.|++|+
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            47889999999999999999999999999999999995

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.29  E-value=0.00052  Score=68.10  Aligned_cols=166  Identities=13%  Similarity=0.189  Sum_probs=107.2

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcc----------eEEEEeccCccC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGV----------VTCLSRSECNIT  408 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~----------Vt~l~~sp~~~~  408 (540)
                      +.++++++|++++++-...|+|.++-++. |.+...+.             ...|.+.          +.+..+.|    
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~-------------~~~h~g~~p~~rQ~~~h~H~a~~tP----  154 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ-------------VVKHTGSGPHERQESPHVHSANFTP----  154 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCcccccee-------------eeecCCCCCCccccCCccceeeeCC----
Confidence            67788999998877777889999999865 44332210             0123333          78889999    


Q ss_pred             CCcEEEEEeC-CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC--cE
Q psy1242         409 ADCFIASGSA-DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTTFG--DL  484 (540)
Q Consensus       409 dg~~l~sgs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~~g--~~  484 (540)
                      ++++|++.+. -..|.++++..+....       .-...+ .-...-..|.|+|++++....+ -+++|.+|..+.  ..
T Consensus       155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~-------~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         155 DGRYLVVPDLGTDRIFLYDLDDGKLTP-------ADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             CCCEEEEeecCCceEEEEEcccCcccc-------cccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence            9999988874 3478899987533211       111122 2334567899999999876655 588999984422  22


Q ss_pred             EEEecCC-------CCCCCceEEEEeeCCCEEEEecC--CeEEEEecC--CcEEEee
Q psy1242         485 LRSLDPP-------SGFASPESVVMSREGVIVVNYER--GHIAAFTMN--GNRLRHE  530 (540)
Q Consensus       485 ~~~l~~~-------~~~~~v~~l~fspdg~~l~s~~d--g~I~lw~~~--g~~l~~~  530 (540)
                      +..++.+       .+......|.+++||++|.++..  ..|.+|.++  |..|...
T Consensus       227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~  283 (346)
T COG2706         227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV  283 (346)
T ss_pred             EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE
Confidence            2322211       11113468899999999998753  467777655  5555544

>KOG1064|consensus

Probab=98.27  E-value=2.7e-06  Score=97.92  Aligned_cols=147  Identities=14%  Similarity=0.128  Sum_probs=105.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      +..+.|+.+|.. +..+..||.+.+|.+. .+.....               +.|....+.+.|-      +..+++++ 
T Consensus      2254 vtr~~f~~qGnk-~~i~d~dg~l~l~q~~-pk~~~s~---------------qchnk~~~Df~Fi------~s~~~tag~ 2310 (2439)
T KOG1064|consen 2254 VTRSRFNHQGNK-FGIVDGDGDLSLWQAS-PKPYTSW---------------QCHNKALSDFRFI------GSLLATAGR 2310 (2439)
T ss_pred             hhhhhhcccCCc-eeeeccCCceeecccC-Ccceecc---------------ccCCccccceeee------ehhhhcccc
Confidence            556677888886 6777789999999987 5555444               5677777777774      35666654 


Q ss_pred             --CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcEEEEecCCCCC
Q psy1242         418 --ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GDLLRSLDPPSGF  494 (540)
Q Consensus       418 --~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~~~~~l~~~~~~  494 (540)
                        .++.+.+||......        ..++.  +.|.+.++++++-|..++++||+++|.|++||.. .+++++++.    
T Consensus      2311 s~d~~n~~lwDtl~~~~--------~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---- 2376 (2439)
T KOG1064|consen 2311 SSDNRNVCLWDTLLPPM--------NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---- 2376 (2439)
T ss_pred             CCCCCcccchhcccCcc--------cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----
Confidence              478999999765332        12344  7899999999999999999999999999999874 344444332    


Q ss_pred             CCceEEEEeeCCCEEEEe-cCCeEEEEecCC-cEEEee
Q psy1242         495 ASPESVVMSREGVIVVNY-ERGHIAAFTMNG-NRLRHE  530 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g-~~l~~~  530 (540)
                             +. ...++++| +.|.+++|++++ .++.++
T Consensus      2377 -------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2377 -------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             -------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence                   22 34466664 589999999984 344444

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.25  E-value=5.7e-05  Score=78.31  Aligned_cols=142  Identities=17%  Similarity=0.100  Sum_probs=95.0

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      ++++-..+|+|.+.|..+.+.+..+               ......-..+.++|    ||+++.+++.||.|.++|+.+ 
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i---------------~~~~~~h~~~~~s~----Dgr~~yv~~rdg~vsviD~~~-   67 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARI---------------PTGGAPHAGLKFSP----DGRYLYVANRDGTVSVIDLAT-   67 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEE---------------E-STTEEEEEE-TT-----SSEEEEEETTSEEEEEETTS-
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEE---------------cCCCCceeEEEecC----CCCEEEEEcCCCeEEEEECCc-
Confidence            4466677999999999999999888               43333344578899    999999999999999999887 


Q ss_pred             cccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEe-CCCcEEEEecCCCC-----CCCceEEEEe
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHT-TFGDLLRSLDPPSG-----FASPESVVMS  503 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~-~~g~~~~~l~~~~~-----~~~v~~l~fs  503 (540)
                                .+.+..+.... ...++++|+||+++++++ .++.+.+++ .+.+.++.+.....     ...+.++..+
T Consensus        68 ----------~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   68 ----------GKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             ----------SSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             ----------ccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence                      45666775544 467899999999888776 688888876 58888888765321     1145678788


Q ss_pred             eCCC-EEEEe-cCCeEEEEecC
Q psy1242         504 REGV-IVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       504 pdg~-~l~s~-~dg~I~lw~~~  523 (540)
                      |... ++++- +.+.|.+.|..
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEEEccCCeEEEEEec
Confidence            8888 44443 34777666643

...

>KOG0280|consensus

Probab=98.19  E-value=3.3e-05  Score=74.21  Aligned_cols=138  Identities=14%  Similarity=-0.002  Sum_probs=100.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..++.|++.+.. ++++-.+|++.+-+........             ++.+++|+-.....+|+..   +.+.+.+||.
T Consensus       124 ~lslD~~~~~~~-i~vs~s~G~~~~v~~t~~~le~-------------vq~wk~He~E~Wta~f~~~---~pnlvytGgD  186 (339)
T KOG0280|consen  124 ALSLDISTSGTK-IFVSDSRGSISGVYETEMVLEK-------------VQTWKVHEFEAWTAKFSDK---EPNLVYTGGD  186 (339)
T ss_pred             eeEEEeeccCce-EEEEcCCCcEEEEecceeeeee-------------cccccccceeeeeeecccC---CCceEEecCC
Confidence            678888999997 5677678888855443332221             2334889999999999863   5689999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC--CCcEEEEecCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT--FGDLLRSLDPPSGF  494 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~--~g~~~~~l~~~~~~  494 (540)
                      |+.+..||++...          +.+ +...-|...|.+|.-+|. +.+|++|+.|..|++|+.  -++++..-....  
T Consensus       187 D~~l~~~D~R~p~----------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G--  254 (339)
T KOG0280|consen  187 DGSLSCWDIRIPK----------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG--  254 (339)
T ss_pred             CceEEEEEecCCc----------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc--
Confidence            9999999998421          122 224568889999988864 679999999999999975  356655444332  


Q ss_pred             CCceEEEEeeCC
Q psy1242         495 ASPESVVMSREG  506 (540)
Q Consensus       495 ~~v~~l~fspdg  506 (540)
                       .|+.+..+|.-
T Consensus       255 -GVWRi~~~p~~  265 (339)
T KOG0280|consen  255 -GVWRIKHHPEI  265 (339)
T ss_pred             -ceEEEEecchh
Confidence             57889888853

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.00033  Score=73.95  Aligned_cols=161  Identities=15%  Similarity=0.081  Sum_probs=95.3

Q ss_pred             EEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .+..|+|||+.++++.+.++  .|.++|+.+++.. .+               ..+.+......|+|    ||+.|+-.+
T Consensus       236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~L---------------T~~~~~d~~p~~SP----DG~~I~F~S  295 (419)
T PRK04043        236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QI---------------TNYPGIDVNGNFVE----DDKRIVFVS  295 (419)
T ss_pred             EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-Ec---------------ccCCCccCccEECC----CCCEEEEEE
Confidence            45678999998777766554  4666687766543 33               23333344568999    998776665


Q ss_pred             -CCCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-------C--cEEEEeCCCcEE
Q psy1242         418 -ADCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL-------G--PVLVHTTFGDLL  485 (540)
Q Consensus       418 -~Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-------g--~v~iw~~~g~~~  485 (540)
                       ..+.  |.+.|+.++.           . ..+......  ...|||||+.|+..+..       +  .|.+.+..+...
T Consensus       296 dr~g~~~Iy~~dl~~g~-----------~-~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        296 DRLGYPNIFMKKLNSGS-----------V-EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             CCCCCceEEEEECCCCC-----------e-EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence             4454  4445544321           1 122111111  24899999988776654       2  344445433344


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEEEeee-cCCcce
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHES-HNDNLQ  537 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l~~~~-~~~~V~  537 (540)
                      +.+....   ......|+|||+.|+...    ...+.+.+++|+....+. ..+.|.
T Consensus       362 ~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~  415 (419)
T PRK04043        362 RRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQ  415 (419)
T ss_pred             EECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccC
Confidence            5554432   224688999999887632    235788889987666664 344443

>KOG4532|consensus

Probab=98.13  E-value=0.00046  Score=65.70  Aligned_cols=167  Identities=13%  Similarity=-0.024  Sum_probs=103.2

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      +....+++++|+++ .++.+....|..|.++. ++.+..+.             ...-.+.=.+.+|+.    ....+|+
T Consensus       159 ~~~ns~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~~~~-------------~a~t~D~gF~~S~s~----~~~~FAv  220 (344)
T KOG4532|consen  159 LTQNSLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIENIY-------------EAPTSDHGFYNSFSE----NDLQFAV  220 (344)
T ss_pred             cceeeeEEcCCCce-EEEecCCCcceEEEeCCccceeeeeE-------------ecccCCCceeeeecc----CcceEEE
Confidence            44778889999996 57777788999998864 23222220             023344556888998    7889999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEE-EeCCCcEEEEecCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG--LVVSGSQLGPVLV-HTTFGDLLRSLDPPS  492 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~--~lasgs~Dg~v~i-w~~~g~~~~~l~~~~  492 (540)
                      +..||++.|||++...- +.     .....+-..|.+.+..+.|++-|.  +|.-.-.=+.+.+ ..+++.-...+....
T Consensus       221 ~~Qdg~~~I~DVR~~~t-pm-----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~  294 (344)
T KOG4532|consen  221 VFQDGTCAIYDVRNMAT-PM-----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD  294 (344)
T ss_pred             EecCCcEEEEEeccccc-ch-----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence            99999999999975321 00     011122245899999999998653  3433333344544 344554433333222


Q ss_pred             CC------CCceEEEEeeCCCEEEEecCCeEEEEecCCcEE
Q psy1242         493 GF------ASPESVVMSREGVIVVNYERGHIAAFTMNGNRL  527 (540)
Q Consensus       493 ~~------~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l  527 (540)
                      ..      ..|...+|+.++.-+.+...-.+.-|.++.+.-
T Consensus       295 d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srsR  335 (344)
T KOG4532|consen  295 DVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRSR  335 (344)
T ss_pred             cccccccccccccccccCCCcccccccchhhheeeccccce
Confidence            10      125666777777666665556666777665443

>KOG2695|consensus

Probab=98.12  E-value=6.5e-06  Score=80.53  Aligned_cols=136  Identities=15%  Similarity=0.104  Sum_probs=98.7

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCC-----eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNA-----RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g-----~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      .+..|.-.+. |+..|...|.|...|++.+     .+.+.+                -|.+.|+|+..-..   ++++|+
T Consensus       256 fAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl----------------yh~Ssvtslq~Lq~---s~q~Lm  315 (425)
T KOG2695|consen  256 FALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL----------------YHDSSVTSLQILQF---SQQKLM  315 (425)
T ss_pred             HHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEE----------------EcCcchhhhhhhcc---ccceEe
Confidence            3444455566 7899999999999999864     233333                48899999875432   678999


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEE--EEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVT--SVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~--~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      +.+.+|+|++||.+..+.        .+-+.++.||.+.-.  -+.+.++...+++++.|...+||.. .|+++.+++.+
T Consensus       316 aS~M~gkikLyD~R~~K~--------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  316 ASDMTGKIKLYDLRATKC--------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             eccCcCceeEeeehhhhc--------ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            999999999999986332        234888999976433  2345677788999999999999955 89999998865


Q ss_pred             CCC--CCceEEEEe
Q psy1242         492 SGF--ASPESVVMS  503 (540)
Q Consensus       492 ~~~--~~v~~l~fs  503 (540)
                      ...  ..+.+++|.
T Consensus       388 ~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  388 YSASEVDIPSVAFD  401 (425)
T ss_pred             Cccccccccceehh
Confidence            431  134556663

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.11  E-value=0.0018  Score=66.23  Aligned_cols=112  Identities=11%  Similarity=0.089  Sum_probs=73.9

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc-------CCCCEEEEEEcCCCCEEEEEeC----------
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG-------HEQPVTSVAISAELGLVVSGSQ----------  471 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-------h~~~V~~v~~spdg~~lasgs~----------  471 (540)
                      +|+++..... |+|.+-|+.......      .++...+..       ..+.+.-++++++++.+.....          
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~------~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~  277 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKF------LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA  277 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCccee------cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence            5666655555 999999965422110      122222211       2233445999999987776431          


Q ss_pred             CCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCC-EEEE--ecCCeEEEEecC-CcEEEee
Q psy1242         472 LGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGV-IVVN--YERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       472 Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~-~l~s--~~dg~I~lw~~~-g~~l~~~  530 (540)
                      .+.|.+.+ .+++.+..+....   .+..++++|||+ .|++  +.++.|.++|.. ++.+++.
T Consensus       278 ~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       278 SRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            13566554 4888888887644   578999999999 6665  357889999987 7788877

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2695|consensus

Probab=98.09  E-value=1.8e-05  Score=77.47  Aligned_cols=151  Identities=11%  Similarity=0.096  Sum_probs=109.4

Q ss_pred             EEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccc
Q psy1242         354 CGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQS  433 (540)
Q Consensus       354 sgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~  433 (540)
                      +.+.+-.+-+-|+++|- .+.+                ...+.|.++.|..    .+.++..|++.|.|-..|++.+.+.
T Consensus       229 s~G~sqqv~L~nvetg~-~qsf----------------~sksDVfAlQf~~----s~nLv~~GcRngeI~~iDLR~rnqG  287 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGH-QQSF----------------QSKSDVFALQFAG----SDNLVFNGCRNGEIFVIDLRCRNQG  287 (425)
T ss_pred             cccccceeEEEEeeccc-cccc----------------ccchhHHHHHhcc----cCCeeEecccCCcEEEEEeeecccC
Confidence            34456777788887653 2333                3456788888887    7889999999999999999875321


Q ss_pred             ccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC----CCcEEEEecCCCCCCCceEEEEeeCCCE
Q psy1242         434 IVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT----FGDLLRSLDPPSGFASPESVVMSREGVI  508 (540)
Q Consensus       434 ~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~----~g~~~~~l~~~~~~~~v~~l~fspdg~~  508 (540)
                            .+.+.+.+. |...|+|+..-. ++++|.+.+.+|+|.+||.    .++-+.+..+|.......-+.+.+....
T Consensus       288 ------~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~  360 (425)
T KOG2695|consen  288 ------NGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS  360 (425)
T ss_pred             ------CCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce
Confidence                  134555554 899999997766 7889999999999999975    2334788888866333333445566555


Q ss_pred             EEE-ecCCeEEEEecC-CcEEEeeec
Q psy1242         509 VVN-YERGHIAAFTMN-GNRLRHESH  532 (540)
Q Consensus       509 l~s-~~dg~I~lw~~~-g~~l~~~~~  532 (540)
                      +++ |+|-..++|+++ |.++.+...
T Consensus       361 I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  361 IFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             EEEccCeeEEEEEecccCceeeccCC
Confidence            555 778889999998 888888753

>KOG1354|consensus

Probab=98.09  E-value=0.00014  Score=71.44  Aligned_cols=177  Identities=11%  Similarity=0.047  Sum_probs=115.4

Q ss_pred             cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC-eEEE--EEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA-RIVQ--IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g-~~~~--~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                      +.....-.++.+.++.|++. +.++ .|=.|.+|+++-- +...  .++.+.          ...-...|++..|+|.  
T Consensus       159 ~aNaHtyhiNSIS~NsD~Et-~lSA-DdLRINLWnlei~d~sFnIVDIKP~n----------mEeLteVITsaEFhp~--  224 (433)
T KOG1354|consen  159 YANAHTYHINSISVNSDKET-FLSA-DDLRINLWNLEIIDQSFNIVDIKPAN----------MEELTEVITSAEFHPH--  224 (433)
T ss_pred             ccccceeEeeeeeecCccce-Eeec-cceeeeeccccccCCceeEEEccccC----------HHHHHHHHhhhccCHh--
Confidence            33444556888899999996 4555 4889999998632 2211  110000          0122457899999994  


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCc-----ccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--
Q psy1242         408 TADCFIASGSADCTVLLWHWNART-----QSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--  480 (540)
Q Consensus       408 ~dg~~l~sgs~DgtV~lWd~~~~~-----~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--  480 (540)
                       ....++-.|..|+|++-|++...     .....+++.+....-+.+--..|..+.|+.+|+++++-+. -+|++|+.  
T Consensus       225 -~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm  302 (433)
T KOG1354|consen  225 -HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM  302 (433)
T ss_pred             -HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence             56788888899999999998421     1111122233333334445567889999999999987543 58899976  


Q ss_pred             CCcEEEEecCCCC------------CC-CceEEEEeeCCCEEEEec-CCeEEEEecC
Q psy1242         481 FGDLLRSLDPPSG------------FA-SPESVVMSREGVIVVNYE-RGHIAAFTMN  523 (540)
Q Consensus       481 ~g~~~~~l~~~~~------------~~-~v~~l~fspdg~~l~s~~-dg~I~lw~~~  523 (540)
                      ..+++.+.+.|..            ++ .--.++|+-++.++.+|+ .+..++|+..
T Consensus       303 e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  303 EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence            5667777766542            10 113578888888999875 5778888854

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.08  E-value=0.0032  Score=61.45  Aligned_cols=167  Identities=15%  Similarity=0.163  Sum_probs=100.4

Q ss_pred             EEEEEe-cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeec-cCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTT-VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG-HYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~s-pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~-h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ..+++. ++++ ++++.  .+.+.++|..+++.........           .. .....+.+++.|    +|+..++..
T Consensus        43 ~G~~~~~~~g~-l~v~~--~~~~~~~d~~~g~~~~~~~~~~-----------~~~~~~~~ND~~vd~----~G~ly~t~~  104 (246)
T PF08450_consen   43 NGMAFDRPDGR-LYVAD--SGGIAVVDPDTGKVTVLADLPD-----------GGVPFNRPNDVAVDP----DGNLYVTDS  104 (246)
T ss_dssp             EEEEEECTTSE-EEEEE--TTCEEEEETTTTEEEEEEEEET-----------TCSCTEEEEEEEE-T----TS-EEEEEE
T ss_pred             ceEEEEccCCE-EEEEE--cCceEEEecCCCcEEEEeeccC-----------CCcccCCCceEEEcC----CCCEEEEec
Confidence            334455 6665 44554  3556666998886654441100           11 345688999999    998777766


Q ss_pred             CC--------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeC--CCc-E-
Q psy1242         418 AD--------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVV-SGSQLGPVLVHTT--FGD-L-  484 (540)
Q Consensus       418 ~D--------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la-sgs~Dg~v~iw~~--~g~-~-  484 (540)
                      ..        |.|..++...            + +..+...-...+.|+|+|+++.|+ +-+..+.|..++.  .+. + 
T Consensus       105 ~~~~~~~~~~g~v~~~~~~~------------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~  171 (246)
T PF08450_consen  105 GGGGASGIDPGSVYRIDPDG------------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS  171 (246)
T ss_dssp             CCBCTTCGGSEEEEEEETTS------------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred             CCCccccccccceEEECCCC------------e-EEEEecCcccccceEECCcchheeecccccceeEEEecccccccee
Confidence            54        3344444331            1 222333345578999999998665 5566777755432  332 2 


Q ss_pred             ----EEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEEeeecC-Ccceec
Q psy1242         485 ----LRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRHESHN-DNLQKT  539 (540)
Q Consensus       485 ----~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~~~~~~-~~V~~v  539 (540)
                          ...+....+  .+..+++..+|++.++ ...+.|.+++++|+++..+... ..++++
T Consensus       172 ~~~~~~~~~~~~g--~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~  230 (246)
T PF08450_consen  172 NRRVFIDFPGGPG--YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNC  230 (246)
T ss_dssp             EEEEEEE-SSSSC--EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEE
T ss_pred             eeeeEEEcCCCCc--CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEE
Confidence                222222222  3678999999997776 4689999999999999988744 556555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064|consensus

Probab=98.05  E-value=1.7e-05  Score=91.59  Aligned_cols=152  Identities=14%  Similarity=0.201  Sum_probs=119.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.|+.-+|...+ ..+|+.||++++|.-..++.+..++              .+....|+.+.|+.    .|+.+..+..
T Consensus      2211 v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~~r--------------t~g~s~vtr~~f~~----qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVCFR--------------TAGNSRVTRSRFNH----QGNKFGIVDG 2271 (2439)
T ss_pred             eeeecCCCCCce-EEecCCCceEEEEeccCCCeEEEee--------------ccCcchhhhhhhcc----cCCceeeecc
Confidence            677777788875 6899999999999988888776663              23348899999998    8999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeC--CCc--EEEEecCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS---QLGPVLVHTT--FGD--LLRSLDPP  491 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs---~Dg~v~iw~~--~g~--~~~~l~~~  491 (540)
                      ||.+.+|...            +++....+.|........|-.  ..+++++   .++.+.+||.  .+.  ++.  ..|
T Consensus      2272 dg~l~l~q~~------------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H 2335 (2439)
T KOG1064|consen 2272 DGDLSLWQAS------------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH 2335 (2439)
T ss_pred             CCceeecccC------------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec
Confidence            9999999876            357778888998888888865  5566654   4677899964  332  334  667


Q ss_pred             CCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEE
Q psy1242         492 SGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRL  527 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l  527 (540)
                      .+  .++++++.|..+.+++| .+|.|++||+..+.|
T Consensus      2336 ~~--gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2336 DG--GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             CC--CceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence            77  56999999999999985 579999999985444

>KOG0882|consensus

Probab=98.03  E-value=6.6e-05  Score=75.92  Aligned_cols=253  Identities=12%  Similarity=0.021  Sum_probs=153.0

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCC-CCCCccccccC---------CCcC
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSN-NNAPVPKRHLG---------DNFS  332 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~-~~~~~~~~~~~---------~~~~  332 (540)
                      .+..+.++|.|+.++.|-...........|-..+......+..+.|+.+..+..+ +.+... ..+.         ..+-
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv-fDvEn~DminmiKL~~l   97 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV-FDVENFDMINMIKLVDL   97 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE-EEeeccchhhhcccccC
Confidence            3556889999999999998663433333333333333335667889988876543 222211 1111         0111


Q ss_pred             cceeeEEEEEEEecCCC--EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         333 QKLRVRHNCFVTTVDSR--FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~--~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                      +    ...++..++...  .+.++...++.+.|+|-...-+...+             .-.-|..+|.++...+    .+
T Consensus        98 P----g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-------------fkklH~sPV~~i~y~q----a~  156 (558)
T KOG0882|consen   98 P----GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-------------FKKLHFSPVKKIRYNQ----AG  156 (558)
T ss_pred             C----CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-------------ecccccCceEEEEeec----cc
Confidence            1    123343333321  13334446788999986643322111             0045999999999999    88


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccc----cCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE-EeCCCcEE
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSI----VGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLL  485 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~----~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i-w~~~g~~~  485 (540)
                      ..++|....|-|.-|.....-+.+    .-+.....-+..+.......+++.|+|++..+.+-+.|..|++ |..+|+++
T Consensus       157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            899999999999999865311100    0000111112222334567789999999999999999999998 45577766


Q ss_pred             EEecCCC-------------------------------CCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeeecC
Q psy1242         486 RSLDPPS-------------------------------GFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHESHN  533 (540)
Q Consensus       486 ~~l~~~~-------------------------------~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~~~  533 (540)
                      +.+..-.                               +...-..++|...|++|+.+.---|++.++. +...+.+..+
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk~  316 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGKD  316 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEeccc
Confidence            5443100                               1113356888889999998876678888887 6666666655


Q ss_pred             Ccce
Q psy1242         534 DNLQ  537 (540)
Q Consensus       534 ~~V~  537 (540)
                      +.|.
T Consensus       317 e~ir  320 (558)
T KOG0882|consen  317 EAIR  320 (558)
T ss_pred             hhhh
Confidence            5553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.99  E-value=0.0006  Score=70.29  Aligned_cols=219  Identities=15%  Similarity=0.141  Sum_probs=121.3

Q ss_pred             eecCCcEEEEEcc-CcceEEEEcCCCCCccc----CCCCcC-------CCCCCCCCccccCCCCeeeccCCCCCCccccc
Q psy1242         259 TLHMPSVVTVTAN-HQFAINRWNPDYAASIQ----SPSYAE-------TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH  326 (540)
Q Consensus       259 ~~~~~~~~lvs~s-~D~tv~~W~~~~~~~~~----~~~~~~-------~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~  326 (540)
                      .+.++...++.++ .+++|.+++........    ...|.+       ........+.+++|+..+.+.+-.........
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence            3444444455554 47888888776532111    111211       11222335778899865554322222222222


Q ss_pred             cCCC---cCccee------eEEEEEEEecCCCEEEEEEecCCcEEEEEcc--CCeE--EEEEecccceeeeeeEEEee-c
Q psy1242         327 LGDN---FSQKLR------VRHNCFVTTVDSRFLLACGFWDNSFRVFSTD--NARI--VQIIFGHYGVVTSRIVQIIF-G  392 (540)
Q Consensus       327 ~~~~---~~~~~~------v~~~~~~~spdg~~llasgs~Dgsv~iwd~~--~g~~--~~~l~~~~~~v~~~~~~~l~-~  392 (540)
                      +...   +.....      -.-..++|+|++++++++...+++|.++++.  +++.  ++.+            .++. +
T Consensus       173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~------------~~~~~~  240 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI------------STLPEG  240 (345)
T ss_dssp             E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE------------ESCETT
T ss_pred             EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe------------eecccc
Confidence            2111   111000      1146788999999988888899999999988  4432  2222            1111 1


Q ss_pred             --cCcceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy1242         393 --HYGVVTCLSRSECNITADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       393 --h~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg  469 (540)
                        .......|+++|    ||++|..+. ...+|.+++++...+.       .+.+..+......-..++++|+|++|+++
T Consensus       241 ~~~~~~~~~i~isp----dg~~lyvsnr~~~sI~vf~~d~~~g~-------l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va  309 (345)
T PF10282_consen  241 FTGENAPAEIAISP----DGRFLYVSNRGSNSISVFDLDPATGT-------LTLVQTVPTGGKFPRHFAFSPDGRYLYVA  309 (345)
T ss_dssp             SCSSSSEEEEEE-T----TSSEEEEEECTTTEEEEEEECTTTTT-------EEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred             ccccCCceeEEEec----CCCEEEEEeccCCEEEEEEEecCCCc-------eEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence              112578899999    999887766 4678999999543322       23444554445557899999999998877


Q ss_pred             e-CCCcEEEE--e-CCCcEEEEecC-CCCCCCceEEEE
Q psy1242         470 S-QLGPVLVH--T-TFGDLLRSLDP-PSGFASPESVVM  502 (540)
Q Consensus       470 s-~Dg~v~iw--~-~~g~~~~~l~~-~~~~~~v~~l~f  502 (540)
                      . .++.|.++  + .+|.+...-.. ...  .+.||.|
T Consensus       310 ~~~s~~v~vf~~d~~tG~l~~~~~~~~~~--~p~ci~f  345 (345)
T PF10282_consen  310 NQDSNTVSVFDIDPDTGKLTPVGSSVPIP--SPVCIVF  345 (345)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEEEESS--SEEEEEE
T ss_pred             ecCCCeEEEEEEeCCCCcEEEecccccCC--CCEEEeC
Confidence            7 56677776  3 36765443321 111  3566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4190|consensus

Probab=97.97  E-value=3.1e-05  Score=79.76  Aligned_cols=153  Identities=14%  Similarity=0.109  Sum_probs=100.7

Q ss_pred             EEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCC
Q psy1242         351 LLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNA  429 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~  429 (540)
                      -+++++.|++|++|.++. |..+.+         +.|..+++.|..+|..+.|-.    +-+++++  .||-+.+||--.
T Consensus       749 SFiSASkDKTVKLWSik~EgD~~~t---------saCQfTY~aHkk~i~~igfL~----~lr~i~S--cD~giHlWDPFi  813 (1034)
T KOG4190|consen  749 SFISASKDKTVKLWSIKPEGDEIGT---------SACQFTYQAHKKPIHDIGFLA----DLRSIAS--CDGGIHLWDPFI  813 (1034)
T ss_pred             ceeeccCCceEEEEEeccccCcccc---------ceeeeEhhhccCcccceeeee----ccceeee--ccCcceeecccc
Confidence            468999999999999873 222221         235567799999999999987    6666654  589999999543


Q ss_pred             CcccccCCCCCCcceEEe-----ccCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeC-CCcEEEEecCCCC---CCCceE
Q psy1242         430 RTQSIVGETDTPTPRATL-----TGHEQPVTSVAISAELGLVVS-GSQLGPVLVHTT-FGDLLRSLDPPSG---FASPES  499 (540)
Q Consensus       430 ~~~~~~~~~~~~~~~~~l-----~~h~~~V~~v~~spdg~~las-gs~Dg~v~iw~~-~g~~~~~l~~~~~---~~~v~~  499 (540)
                                 +.++..+     .+-.+.|.|+. +-+..+++. ++...+|++.+. .++....++....   ...+.+
T Consensus       814 -----------gr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  814 -----------GRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             -----------cchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence                       2222211     11223344442 213344444 477889988754 6666655543211   125789


Q ss_pred             EEEeeCCCEEEEe-cCCeEEEEecC-CcEEEee
Q psy1242         500 VVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       500 l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~  530 (540)
                      ++..+.|..++.+ +.|+|.+.|.. |+.+.+.
T Consensus       882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  882 IAVADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             EEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            9999999999985 67999999865 7766644

>KOG4714|consensus

Probab=97.96  E-value=3.4e-05  Score=72.97  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=67.2

Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCC
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLG  473 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg  473 (540)
                      +.|++++-+|.   ..+.+++|+.||.+.+||++...          .+...+..|+.++..|.|+| ++..|.++++||
T Consensus       180 ~~v~~l~~hp~---qq~~v~cgt~dg~~~l~d~rn~~----------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG  246 (319)
T KOG4714|consen  180 DAVTALCSHPA---QQHLVCCGTDDGIVGLWDARNVA----------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG  246 (319)
T ss_pred             ccchhhhCCcc---cccEEEEecCCCeEEEEEccccc----------chHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence            44999999994   56677889999999999998742          46777899999999999999 467899999999


Q ss_pred             cEEEEeCCCcEEE
Q psy1242         474 PVLVHTTFGDLLR  486 (540)
Q Consensus       474 ~v~iw~~~g~~~~  486 (540)
                      .+.-|+.++..+.
T Consensus       247 slw~wdas~~~l~  259 (319)
T KOG4714|consen  247 SLWHWDASTTFLS  259 (319)
T ss_pred             cEEEEcCCCceEE
Confidence            9999998876665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.94  E-value=0.0021  Score=62.16  Aligned_cols=168  Identities=12%  Similarity=0.041  Sum_probs=96.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC---CcEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA---DCFIAS  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d---g~~l~s  415 (540)
                      -..++||||+. +||.+...|+|+++|+. |..+..+.......        ..-...|..+.|-+... +   ...|+.
T Consensus        46 WRkl~WSpD~t-lLa~a~S~G~i~vfdl~-g~~lf~I~p~~~~~--------~d~~~Aiagl~Fl~~~~-s~~ws~ELlv  114 (282)
T PF15492_consen   46 WRKLAWSPDCT-LLAYAESTGTIRVFDLM-GSELFVIPPAMSFP--------GDLSDAIAGLIFLEYKK-SAQWSYELLV  114 (282)
T ss_pred             heEEEECCCCc-EEEEEcCCCeEEEEecc-cceeEEcCcccccC--------CccccceeeeEeecccc-ccccceeEEE
Confidence            45678899999 68999999999999997 44444542211100        11234556666544110 1   124555


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeC-CCc----------EEEE-eCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQ-LGP----------VLVH-TTFG  482 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~-Dg~----------v~iw-~~~g  482 (540)
                      -..+|.++=+-+..++...    ........+. .+...|.++.++|..++|+.|+. ...          +.-| ..++
T Consensus       115 i~Y~G~L~Sy~vs~gt~q~----y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~  190 (282)
T PF15492_consen  115 INYRGQLRSYLVSVGTNQG----YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD  190 (282)
T ss_pred             EeccceeeeEEEEcccCCc----ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC
Confidence            6677777766654322110    0011122232 34678999999999887766653 111          2224 1111


Q ss_pred             c---------------------EEEEe-------cC-CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         483 D---------------------LLRSL-------DP-PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       483 ~---------------------~~~~l-------~~-~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .                     +.+.+       +. ...  .|..+..||||..||+ ..+|.|.+|++-
T Consensus       191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d--~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQD--GIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             CCcEEEccccCccccccccccceeeccceeeeeccccCCC--ceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence            1                     00000       01 112  5788999999999998 568999999975

>KOG2041|consensus

Probab=97.88  E-value=5.5e-05  Score=80.26  Aligned_cols=130  Identities=18%  Similarity=0.259  Sum_probs=94.9

Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccC----CCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVG----ETDTPTPRATLTGHEQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~----~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg  469 (540)
                      .....|++|+.    ...+|+.|+.||.++|-.+.+.+.....    .......-+++.||...|.-+.|+...+.+-+.
T Consensus        14 nvkL~c~~WNk----e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   14 NVKLHCAEWNK----ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             CceEEEEEEcc----cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            35678999999    7889999999999999988764432211    111223347889999999999999999999999


Q ss_pred             eCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEE
Q psy1242         470 SQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRL  527 (540)
Q Consensus       470 s~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l  527 (540)
                      ..+|.|.||-. .|+....+........|.+++|..||..++. ..||.|.+=+++|+.+
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI  149 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI  149 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence            99999999954 6654433322222226889999999987765 6788876666665443

>KOG2315|consensus

Probab=97.87  E-value=0.00021  Score=74.20  Aligned_cols=128  Identities=13%  Similarity=0.048  Sum_probs=92.9

Q ss_pred             EEEEEEecCCCEE-EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFL-LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~l-lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.++.|+|+|+-. ++-|..--++.|+|++ ++.+..+                 -+++=+++-|+|    .|++|+.+|
T Consensus       273 Vhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-----------------~egpRN~~~fnp----~g~ii~lAG  330 (566)
T KOG2315|consen  273 VHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-----------------PEGPRNTAFFNP----HGNIILLAG  330 (566)
T ss_pred             ceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-----------------CCCCccceEECC----CCCEEEEee
Confidence            7888999999753 3336667789999987 7777665                 457778999999    999998887


Q ss_pred             C---CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCcEEEEe
Q psy1242         418 A---DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ------LGPVLVHTTFGDLLRSL  488 (540)
Q Consensus       418 ~---DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~------Dg~v~iw~~~g~~~~~l  488 (540)
                      -   -|.+.|||...           .+++..+..-..  +-+.|+|||++|++++.      |..++||..+|..+..-
T Consensus       331 FGNL~G~mEvwDv~n-----------~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~  397 (566)
T KOG2315|consen  331 FGNLPGDMEVWDVPN-----------RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK  397 (566)
T ss_pred             cCCCCCceEEEeccc-----------hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence            5   57999999876           234555544333  44789999999999875      56678898899887543


Q ss_pred             cCCCCCCCceEEEEee
Q psy1242         489 DPPSGFASPESVVMSR  504 (540)
Q Consensus       489 ~~~~~~~~v~~l~fsp  504 (540)
                      .-..   ....+.|-|
T Consensus       398 ~f~s---EL~qv~W~P  410 (566)
T KOG2315|consen  398 MFKS---ELLQVEWRP  410 (566)
T ss_pred             hhhH---hHhheeeee
Confidence            3221   135666664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.87  E-value=0.0017  Score=68.60  Aligned_cols=156  Identities=9%  Similarity=0.014  Sum_probs=91.3

Q ss_pred             EEEEEEecCCCEEEEEEecC---CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-
Q psy1242         339 HNCFVTTVDSRFLLACGFWD---NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~D---gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-  414 (540)
                      ...-.|+|||+.+++..+.+   ..|.++|+.+|+.....                ...+.+...+|+|    ||+.|+ 
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt----------------~~~g~~~~~~~SP----DG~~la~  249 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA----------------SSQGMLVVSDVSK----DGSKLLL  249 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe----------------cCCCcEEeeEECC----CCCEEEE
Confidence            34567899998644443333   46888899887765433                2445567788999    897665 


Q ss_pred             EEeCCCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--eCCCcEEEEec
Q psy1242         415 SGSADCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVH--TTFGDLLRSLD  489 (540)
Q Consensus       415 sgs~Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw--~~~g~~~~~l~  489 (540)
                      +.+.++.  |.++++..+            ....+..+........|+|||+.|+-.+ ..|.-.||  +..+...+.+.
T Consensus       250 ~~~~~g~~~Iy~~dl~~g------------~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt  317 (419)
T PRK04043        250 TMAPKGQPDIYLYDTNTK------------TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV  317 (419)
T ss_pred             EEccCCCcEEEEEECCCC------------cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence            4444544  555555432            2334444443344568999998776655 44544443  54433333333


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEe-cC---------CeEEEEecCCcEEEee
Q psy1242         490 PPSGFASPESVVMSREGVIVVNY-ER---------GHIAAFTMNGNRLRHE  530 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~-~d---------g~I~lw~~~g~~l~~~  530 (540)
                      ....    ....|||||+.|+.. ..         ..|.+.++++.....+
T Consensus       318 ~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L  364 (419)
T PRK04043        318 FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL  364 (419)
T ss_pred             cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC
Confidence            2222    124899999988763 21         2577777775444433

>KOG0280|consensus

Probab=97.86  E-value=0.00053  Score=66.10  Aligned_cols=167  Identities=14%  Similarity=0.074  Sum_probs=110.1

Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      +|.+.++-+..+|.|.++..+.......+++    +.+..+     ......++.|++    .+..++++..+|.+.+-+
T Consensus        83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~----ls~~ki-----~~~~~lslD~~~----~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRG----LSSKKI-----SVVEALSLDIST----SGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             CccceeeeccccceEEEEeeccceeeeeecc----cchhhh-----hheeeeEEEeec----cCceEEEEcCCCcEEEEe
Confidence            4444566777788888887654333333311    111000     011245778888    788899998899988544


Q ss_pred             cCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCC--CcEEEE-ecCCCCCCCceEEEE
Q psy1242         427 WNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTTF--GDLLRS-LDPPSGFASPESVVM  502 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~~--g~~~~~-l~~~~~~~~v~~l~f  502 (540)
                      .....         .+.++.+++|+-+..-..|+. +..++.+|+.||.+..|+..  ++.+.. .+.|..  .|.+|.-
T Consensus       150 ~t~~~---------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~--GV~SI~s  218 (339)
T KOG0280|consen  150 ETEMV---------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS--GVVSIYS  218 (339)
T ss_pred             cceee---------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec--ceEEEec
Confidence            32211         345568899999999888875 34689999999999999763  444443 445555  5677777


Q ss_pred             ee-CCCEEEEec-CCeEEEEecC--CcEEEeeecCCcce
Q psy1242         503 SR-EGVIVVNYE-RGHIAAFTMN--GNRLRHESHNDNLQ  537 (540)
Q Consensus       503 sp-dg~~l~s~~-dg~I~lw~~~--g~~l~~~~~~~~V~  537 (540)
                      +| .+.+|++|+ |..|++||..  |+.|......+.|.
T Consensus       219 s~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVW  257 (339)
T KOG0280|consen  219 SPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVW  257 (339)
T ss_pred             CCCCCceEEEeccccceeeeehhcccCccccCccccceE
Confidence            65 477899975 8899999987  78777655444443

>KOG1275|consensus

Probab=97.85  E-value=0.00014  Score=79.40  Aligned_cols=147  Identities=14%  Similarity=0.155  Sum_probs=102.0

Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC---
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA---  418 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~---  418 (540)
                      .....+++ ++.+|...|+|.+-|..+.+.++++               .+|++.|+.+..      .|+.|+|+|.   
T Consensus       181 ~imR~Nnr-~lf~G~t~G~V~LrD~~s~~~iht~---------------~aHs~siSDfDv------~GNlLitCG~S~R  238 (1118)
T KOG1275|consen  181 TIMRYNNR-NLFCGDTRGTVFLRDPNSFETIHTF---------------DAHSGSISDFDV------QGNLLITCGYSMR  238 (1118)
T ss_pred             EEEEecCc-EEEeecccceEEeecCCcCceeeee---------------eccccceeeeec------cCCeEEEeecccc
Confidence            33445677 4799999999999999999999999               889999988776      5789999876   


Q ss_pred             ------CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEe-C--CCcEEEEe
Q psy1242         419 ------DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHT-T--FGDLLRSL  488 (540)
Q Consensus       419 ------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~-~--~g~~~~~l  488 (540)
                            |.-|+|||++....        ..|+..-.+   + .-+.|.|.. ..++.+|..|.+.+-+ .  ........
T Consensus       239 ~~~l~~D~FvkVYDLRmmra--------l~PI~~~~~---P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~  306 (1118)
T KOG1275|consen  239 RYNLAMDPFVKVYDLRMMRA--------LSPIQFPYG---P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK  306 (1118)
T ss_pred             cccccccchhhhhhhhhhhc--------cCCcccccC---c-hhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence                  45678999987432        123332222   1 345677764 3567777788886643 1  12212222


Q ss_pred             cC-CCCCCCceEEEEeeCCCEEEEec-CCeEEEEecC
Q psy1242         489 DP-PSGFASPESVVMSREGVIVVNYE-RGHIAAFTMN  523 (540)
Q Consensus       489 ~~-~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~  523 (540)
                      .. +.+ ..+.+.++|++|+.++.|+ +|.|.+|.-+
T Consensus       307 ~v~p~~-s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  307 MVNPNG-SGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             EEccCC-CcceeEEecCCCceEEEecccCcEeeecCC
Confidence            21 222 1478999999999999985 7999999743

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.80  E-value=0.0013  Score=77.17  Aligned_cols=139  Identities=9%  Similarity=-0.021  Sum_probs=85.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEee--------ccCcceEEEEeccCccCCC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIF--------GHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~--------~h~~~Vt~l~~sp~~~~dg  410 (540)
                      ...++++|+|+.|+++.+.+++|++||+.++......-+  ..+.......+.        ..-....++++++    +|
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg--~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~----dG  815 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG--DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK----DG  815 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec--ccccCcccccccCCCCchhhhhccCCceeeEeC----CC
Confidence            356788999998888888899999999987764321100  000000000000        0112345889999    89


Q ss_pred             cEEEEEeCCCcEEEEEcCCCccccc-CCCCCCcc-eEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIV-GETDTPTP-RATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD  483 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~-~~~~~~~~-~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~  483 (540)
                      ..+++.+.+++|++||..+...... +.+..+.. -....+.-....+|+++++|+++++-+.++.|++|+. +++
T Consensus       816 ~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        816 QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            9889999999999999865321100 00000000 0011222345678999999999999999999999876 444

>KOG2114|consensus

Probab=97.79  E-value=0.0009  Score=72.95  Aligned_cols=170  Identities=15%  Similarity=0.224  Sum_probs=110.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcc-eEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGV-VTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~-Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.|+  ++.+. .+|.|+.+|.|.+.+-. -+.++.+               +++... |+.+-...    +..+|++.+
T Consensus        28 isc~--~s~~~-~vvigt~~G~V~~Ln~s-~~~~~~f---------------qa~~~siv~~L~~~~----~~~~L~sv~   84 (933)
T KOG2114|consen   28 ISCC--SSSTG-SVVIGTADGRVVILNSS-FQLIRGF---------------QAYEQSIVQFLYILN----KQNFLFSVG   84 (933)
T ss_pred             eeEE--cCCCc-eEEEeeccccEEEeccc-ceeeehh---------------eecchhhhhHhhccc----CceEEEEEe
Confidence            3444  56666 58999999999888743 3444555               555555 55555443    446888877


Q ss_pred             CCC-----cEEEEEcCCCcccccCCCCCCcce--EEeccC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEE--eC---
Q psy1242         418 ADC-----TVLLWHWNARTQSIVGETDTPTPR--ATLTGH-----EQPVTSVAISAELGLVVSGSQLGPVLVH--TT---  480 (540)
Q Consensus       418 ~Dg-----tV~lWd~~~~~~~~~~~~~~~~~~--~~l~~h-----~~~V~~v~~spdg~~lasgs~Dg~v~iw--~~---  480 (540)
                      .|+     .++||+++.....     .++.++  ..+.+|     ..++.+++++.+-..+|.|=.+|.|...  +.   
T Consensus        85 Ed~~~np~llkiw~lek~~~n-----~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD  159 (933)
T KOG2114|consen   85 EDEQGNPVLLKIWDLEKVDKN-----NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD  159 (933)
T ss_pred             ecCCCCceEEEEecccccCCC-----CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc
Confidence            665     5899998764321     123444  223332     4578999999999999999999999764  22   


Q ss_pred             CCcEEEEecCCCCCCCceEEEEeeCCCE-EEEecCCeEEEEecCCcE--EEeee-cCCccee
Q psy1242         481 FGDLLRSLDPPSGFASPESVVMSREGVI-VVNYERGHIAAFTMNGNR--LRHES-HNDNLQK  538 (540)
Q Consensus       481 ~g~~~~~l~~~~~~~~v~~l~fspdg~~-l~s~~dg~I~lw~~~g~~--l~~~~-~~~~V~~  538 (540)
                      .|.  +....|.+..+|+++++..++.. +.++...+|.+|.+.|+.  +.... ++..++|
T Consensus       160 rgs--r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnC  219 (933)
T KOG2114|consen  160 RGS--RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNC  219 (933)
T ss_pred             ccc--ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCcccee
Confidence            222  22222333338999999999987 444667889999998776  33333 4455554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.78  E-value=0.0027  Score=64.96  Aligned_cols=133  Identities=11%  Similarity=0.087  Sum_probs=98.0

Q ss_pred             ecCCCEEEEEEecCC-cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEE
Q psy1242         345 TVDSRFLLACGFWDN-SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVL  423 (540)
Q Consensus       345 spdg~~llasgs~Dg-sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~  423 (540)
                      .-+++. ++.|..|| .+-|+|.++++. +.+               .+.-+.|-+++.++    +|++++.+.....+.
T Consensus       368 ~~~~e~-~vigt~dgD~l~iyd~~~~e~-kr~---------------e~~lg~I~av~vs~----dGK~~vvaNdr~el~  426 (668)
T COG4946         368 QVDPEG-DVIGTNDGDKLGIYDKDGGEV-KRI---------------EKDLGNIEAVKVSP----DGKKVVVANDRFELW  426 (668)
T ss_pred             ccCCcc-eEEeccCCceEEEEecCCceE-EEe---------------eCCccceEEEEEcC----CCcEEEEEcCceEEE
Confidence            345553 57888888 899999987664 344               46678899999999    999999988888888


Q ss_pred             EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCc----EEEEeCCCcEEEEecCCCCCCCceE
Q psy1242         424 LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGP----VLVHTTFGDLLRSLDPPSGFASPES  499 (540)
Q Consensus       424 lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~----v~iw~~~g~~~~~l~~~~~~~~v~~  499 (540)
                      +.|+++++           +...-+...+-|+..+|||+++++|-+--+|.    |++++..+..+.....+..  .=.+
T Consensus       427 vididngn-----------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta--~Dfs  493 (668)
T COG4946         427 VIDIDNGN-----------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA--YDFS  493 (668)
T ss_pred             EEEecCCC-----------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc--cccC
Confidence            88887643           22233445677999999999999999887775    5677776654444444443  2256


Q ss_pred             EEEeeCCCEEEE
Q psy1242         500 VVMSREGVIVVN  511 (540)
Q Consensus       500 l~fspdg~~l~s  511 (540)
                      -+|.|||++|..
T Consensus       494 PaFD~d~ryLYf  505 (668)
T COG4946         494 PAFDPDGRYLYF  505 (668)
T ss_pred             cccCCCCcEEEE
Confidence            789999998876

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.78  E-value=0.00067  Score=78.23  Aligned_cols=167  Identities=9%  Similarity=-0.002  Sum_probs=107.0

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccc------ceee---e-----------ee-----------
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHY------GVVT---S-----------RI-----------  386 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~------~~v~---~-----------~~-----------  386 (540)
                      .+.|++||||++ ++|....++++.+.+- +.+.+....-+.      ..|+   +           +.           
T Consensus       122 GI~a~~WSPD~E-lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  122 GILAASWSPDEE-LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cEEEEEECCCcC-EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            478999999999 5677777888887753 355554443222      2221   1           00           


Q ss_pred             ---EEEeeccCcceEEEEeccCccCCCcEEEEEeC---C---CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEE
Q psy1242         387 ---VQIIFGHYGVVTCLSRSECNITADCFIASGSA---D---CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSV  457 (540)
Q Consensus       387 ---~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~---D---gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v  457 (540)
                         ...+. +.+.-..|+|-.    ||.++++.+.   .   ..+|||+-+.            ....+-..-.+--.++
T Consensus       200 ~~d~~~~s-~dd~~~~ISWRG----DG~yFAVss~~~~~~~~R~iRVy~ReG------------~L~stSE~v~gLe~~l  262 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISWRG----DGEYFAVSSVEPETGSRRVIRVYSREG------------ELQSTSEPVDGLEGAL  262 (928)
T ss_pred             ccccCccc-cCCCceEEEECC----CCcEEEEEEEEcCCCceeEEEEECCCc------------eEEeccccCCCccCCc
Confidence               01122 445667899998    9999998875   2   4789998542            1111111122223468


Q ss_pred             EEcCCCCEEEEEeC---CCcEEEEeCCCcEEEEecCC--CCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         458 AISAELGLVVSGSQ---LGPVLVHTTFGDLLRSLDPP--SGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       458 ~~spdg~~lasgs~---Dg~v~iw~~~g~~~~~l~~~--~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      +|.|.|.+||+...   ...|.++-++|-....+...  .....|..++|++|+.+||..-...|.+|...
T Consensus       263 ~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~  333 (928)
T PF04762_consen  263 SWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRS  333 (928)
T ss_pred             cCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEee
Confidence            99999999998875   23345577777555444433  12236899999999999999656669999865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.78  E-value=0.0032  Score=64.50  Aligned_cols=146  Identities=12%  Similarity=0.052  Sum_probs=107.7

Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC-cEEEE
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC-TVLLW  425 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg-tV~lW  425 (540)
                      +|.+ +|..| -|...|.+...+-.++                 -+|.+.|.-..+..    +++-++.|..|| .+-|+
T Consensus       331 ~Gd~-ia~VS-RGkaFi~~~~~~~~iq-----------------v~~~~~VrY~r~~~----~~e~~vigt~dgD~l~iy  387 (668)
T COG4946         331 NGDY-IALVS-RGKAFIMRPWDGYSIQ-----------------VGKKGGVRYRRIQV----DPEGDVIGTNDGDKLGIY  387 (668)
T ss_pred             CCcE-EEEEe-cCcEEEECCCCCeeEE-----------------cCCCCceEEEEEcc----CCcceEEeccCCceEEEE
Confidence            5664 56666 5777777776565554                 25778888888877    788899999999 89999


Q ss_pred             EcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEee
Q psy1242         426 HWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSR  504 (540)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fsp  504 (540)
                      |.++.            .+..+.+.-+.|.++..+++|+.++.+.....+.+.+. +|.....-+...+  -|...+|+|
T Consensus       388 d~~~~------------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~--lItdf~~~~  453 (668)
T COG4946         388 DKDGG------------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG--LITDFDWHP  453 (668)
T ss_pred             ecCCc------------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc--eeEEEEEcC
Confidence            98762            34556666778999999999999988877777766554 6654433333334  589999999


Q ss_pred             CCCEEEEec-----CCeEEEEecCCcEEEe
Q psy1242         505 EGVIVVNYE-----RGHIAAFTMNGNRLRH  529 (540)
Q Consensus       505 dg~~l~s~~-----dg~I~lw~~~g~~l~~  529 (540)
                      +++++|.+-     ...|++||+.|..+..
T Consensus       454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             CceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            999999863     3568999998755543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.75  E-value=0.0012  Score=69.70  Aligned_cols=72  Identities=21%  Similarity=0.237  Sum_probs=60.7

Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      .....|.|++++|    +.+.++.|+.||+|.+||....             +..+..+.-..+.++|+|+|.++++|+.
T Consensus       257 pL~s~v~~ca~sp----~E~kLvlGC~DgSiiLyD~~~~-------------~t~~~ka~~~P~~iaWHp~gai~~V~s~  319 (545)
T PF11768_consen  257 PLPSQVICCARSP----SEDKLVLGCEDGSIILYDTTRG-------------VTLLAKAEFIPTLIAWHPDGAIFVVGSE  319 (545)
T ss_pred             ecCCcceEEecCc----ccceEEEEecCCeEEEEEcCCC-------------eeeeeeecccceEEEEcCCCcEEEEEcC
Confidence            4678899999999    8999999999999999997652             2333344556789999999999999999


Q ss_pred             CCcEEEEeC
Q psy1242         472 LGPVLVHTT  480 (540)
Q Consensus       472 Dg~v~iw~~  480 (540)
                      .|.+.+||.
T Consensus       320 qGelQ~FD~  328 (545)
T PF11768_consen  320 QGELQCFDM  328 (545)
T ss_pred             CceEEEEEe
Confidence            999999975

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.72  E-value=0.0059  Score=63.13  Aligned_cols=158  Identities=14%  Similarity=0.061  Sum_probs=101.9

Q ss_pred             eEEEEEEEecCCCE-EEEE-----EecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         337 VRHNCFVTTVDSRF-LLAC-----GFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       337 v~~~~~~~spdg~~-llas-----gs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                      ..+..++|+|.|.. -||.     +..+++++||.+..+..+.+-.             +.  .-.=..+.|.+    .|
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-------------lf--k~~~~qLkW~~----~g  234 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-------------LF--KVSGVQLKWQV----LG  234 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------------eE--eecccEEEEec----CC
Confidence            45788889998543 1222     4567889999988666554320             01  11112456666    56


Q ss_pred             cEEEEEe-----------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEE
Q psy1242         411 CFIASGS-----------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVLV  477 (540)
Q Consensus       411 ~~l~sgs-----------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~i  477 (540)
                      ++|+.--           ...++.|.++...            .+....+-.++|...+|.|.++.+++.+  .+..+-+
T Consensus       235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~  302 (561)
T COG5354         235 KYLLVLVMTHTKSNKSYFGESNLYLLRITER------------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSV  302 (561)
T ss_pred             ceEEEEEEEeeecccceeccceEEEEeeccc------------ccceeccccccceeeeecccCCceeEEecccccceee
Confidence            5543211           1246677776532            2222336678999999999998776655  6777788


Q ss_pred             EeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEEEe
Q psy1242         478 HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRH  529 (540)
Q Consensus       478 w~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l~~  529 (540)
                      ++..|.+...+.....    ..+.|+|.+++++.++    .|.+.+|++-|+.+..
T Consensus       303 ~~lr~Nl~~~~Pe~~r----NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~  354 (561)
T COG5354         303 FDLRGNLRFYFPEQKR----NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA  354 (561)
T ss_pred             cccccceEEecCCccc----ccccccCcccEEEEecCCccccceEEeccCCceEEE
Confidence            8888887666654443    6788999999888743    4778999988877654

>KOG4190|consensus

Probab=97.72  E-value=6e-05  Score=77.70  Aligned_cols=132  Identities=17%  Similarity=0.257  Sum_probs=89.9

Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV  466 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l  466 (540)
                      .+.+.||+..|..++--.    +.+-++++|.|.+|++|.++.....    .....|..+++.|+.+|..+.|-.+.+.+
T Consensus       728 L~nf~GH~~~iRai~Aid----NENSFiSASkDKTVKLWSik~EgD~----~~tsaCQfTY~aHkk~i~~igfL~~lr~i  799 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAID----NENSFISASKDKTVKLWSIKPEGDE----IGTSACQFTYQAHKKPIHDIGFLADLRSI  799 (1034)
T ss_pred             eecccCcHHHhHHHHhcc----cccceeeccCCceEEEEEeccccCc----cccceeeeEhhhccCcccceeeeecccee
Confidence            456689999999887654    6778999999999999998752211    11234788899999999999999999888


Q ss_pred             EEEeCCCcEEEEeC-CCcEEEEecC-CCCCCCceEEEEee--CCCEEEEe--cCCeEEEEecC-CcEEEe
Q psy1242         467 VSGSQLGPVLVHTT-FGDLLRSLDP-PSGFASPESVVMSR--EGVIVVNY--ERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       467 asgs~Dg~v~iw~~-~g~~~~~l~~-~~~~~~v~~l~fsp--dg~~l~s~--~dg~I~lw~~~-g~~l~~  529 (540)
                      +++  ||-+.+|+. -|+++..+.. +... .+..+..-+  +..++..|  ...+|+++|.. +.....
T Consensus       800 ~Sc--D~giHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E  866 (1034)
T KOG4190|consen  800 ASC--DGGIHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE  866 (1034)
T ss_pred             eec--cCcceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence            765  789999986 6666553322 2111 223333323  44455543  36788888866 444333

>KOG1409|consensus

Probab=97.68  E-value=0.0011  Score=65.30  Aligned_cols=160  Identities=13%  Similarity=0.120  Sum_probs=107.0

Q ss_pred             EEEEecCCcEEEEE-ccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         352 LACGFWDNSFRVFS-TDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       352 lasgs~Dgsv~iwd-~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      +.+.+.|.++|||- .+.++--..+.              ..-..+++++++.+    +...|+.|-..|++.-+.+...
T Consensus        39 v~~~s~drtvrv~lkrds~q~wpsI~--------------~~mP~~~~~~~y~~----e~~~L~vg~~ngtvtefs~sed  100 (404)
T KOG1409|consen   39 VISVSEDRTVRVWLKRDSGQYWPSIY--------------HYMPSPCSAMEYVS----ESRRLYVGQDNGTVTEFALSED  100 (404)
T ss_pred             eEEccccceeeeEEeccccccCchhh--------------hhCCCCceEeeeec----cceEEEEEEecceEEEEEhhhh
Confidence            57889999999994 44555544441              22346788999998    8888999999999988876532


Q ss_pred             cccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE---------------------------------
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV---------------------------------  477 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i---------------------------------  477 (540)
                      -++       ...++....|...|..+-|+-...++++.+.|..+..                                 
T Consensus       101 fnk-------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~  173 (404)
T KOG1409|consen  101 FNK-------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH  173 (404)
T ss_pred             hhh-------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence            111       2234555667777777777666666666666543221                                 


Q ss_pred             ---------EeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEee---ecCCccee
Q psy1242         478 ---------HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHE---SHNDNLQK  538 (540)
Q Consensus       478 ---------w~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~~---~~~~~V~~  538 (540)
                               ......++.++.+|.+  .+.+++|.+..+.|.++ +|..+.+||+-|+.-...   .|.+.|..
T Consensus       174 ~gqvt~lr~~~~~~~~i~~~~~h~~--~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~  245 (404)
T KOG1409|consen  174 SGQITMLKLEQNGCQLITTFNGHTG--EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA  245 (404)
T ss_pred             ccceEEEEEeecCCceEEEEcCccc--ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence                     1122334556667777  67999999988888884 689999999986543332   36665543

>KOG1912|consensus

Probab=97.68  E-value=0.00054  Score=73.74  Aligned_cols=151  Identities=14%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC--------CCc
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT--------ADC  411 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~--------dg~  411 (540)
                      .++.|+|.|  |||-|+ ...|.+-|..+.+.++.+               ..|+..|+.|.|.|....        ..-
T Consensus        19 ~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqsi---------------e~h~s~V~~VrWap~~~p~~llS~~~~~l   80 (1062)
T KOG1912|consen   19 NAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQSI---------------ELHQSAVTSVRWAPAPSPRDLLSPSSSQL   80 (1062)
T ss_pred             cccccCccc--eEEEec-CceEEEEehhhhhhhhcc---------------ccCccceeEEEeccCCCchhccCccccce
Confidence            455678888  678876 467889999988888888               789999999999873111        123


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC---CC-CEEEEEeCCCcEEEE-eCCCcEEE
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA---EL-GLVVSGSQLGPVLVH-TTFGDLLR  486 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp---dg-~~lasgs~Dg~v~iw-~~~g~~~~  486 (540)
                      .|+++...|.|.+||....           ..+..+..|.+++..++|-+   +. ..++.-....++.+| +.+|+.+.
T Consensus        81 liAsaD~~GrIil~d~~~~-----------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W  149 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLA-----------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW  149 (1062)
T ss_pred             eEEeccccCcEEEEEehhh-----------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee
Confidence            5778888999999998763           34456677888888898876   33 456666677788999 56898877


Q ss_pred             EecCCCCCCCceEEEEee-CCC-EEEEecCCeEEEEe
Q psy1242         487 SLDPPSGFASPESVVMSR-EGV-IVVNYERGHIAAFT  521 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fsp-dg~-~l~s~~dg~I~lw~  521 (540)
                      .......  ...++.+.| |.+ +.+.|+.|.+.+-+
T Consensus       150 k~~ys~~--iLs~f~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  150 KYDYSHE--ILSCFRVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             ccccCCc--ceeeeeeCCCCcceEEEEccCceEEEEe
Confidence            6655444  445667766 333 33446677776664

>KOG0309|consensus

Probab=97.61  E-value=0.00025  Score=75.73  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=95.2

Q ss_pred             eeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy1242         390 IFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       390 l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg  469 (540)
                      +.||...|+.+.|+|.   ....+++++.|..|..||++..          ..++.....-....+.|.|+-....+.+.
T Consensus       110 lhghsraitd~n~~~q---~pdVlatcsvdt~vh~wd~rSp----------~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQ---HPDVLATCSVDTYVHAWDMRSP----------HRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             EecCccceeccccCCC---CCcceeeccccccceeeeccCC----------CcceeeeecccccCceeeecccCcchhhh
Confidence            3799999999999995   6789999999999999999863          24666666666677889999766666666


Q ss_pred             eCCCcEEEEeC--CCcEEEEecCCCCCCCceEEEEee--CCCEEEEecCCeEEEEecC
Q psy1242         470 SQLGPVLVHTT--FGDLLRSLDPPSGFASPESVVMSR--EGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       470 s~Dg~v~iw~~--~g~~~~~l~~~~~~~~v~~l~fsp--dg~~l~s~~dg~I~lw~~~  523 (540)
                      +....|++|+.  .+.++.++++|..  .|+.++|..  .+.++.++.||+|+.|+-+
T Consensus       177 shg~~i~vwd~r~gs~pl~s~K~~vs--~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCSLKGHVS--SVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             ccCCceEEEeccCCCcceEEecccce--eeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            77788999965  5678899999877  678888875  4566667889999999865

>KOG2066|consensus

Probab=97.60  E-value=0.00098  Score=72.20  Aligned_cols=138  Identities=17%  Similarity=0.229  Sum_probs=96.7

Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEc
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHW  427 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~  427 (540)
                      ++ .++-|..+|.|++.+.+ |.. .+.               ..|...      ..    +|.+++|||.||+|.|-.+
T Consensus        49 ~~-~~~~GtH~g~v~~~~~~-~~~-~~~---------------~~~s~~------~~----~Gey~asCS~DGkv~I~sl  100 (846)
T KOG2066|consen   49 DK-FFALGTHRGAVYLTTCQ-GNP-KTN---------------FDHSSS------IL----EGEYVASCSDDGKVVIGSL  100 (846)
T ss_pred             cc-eeeeccccceEEEEecC-Ccc-ccc---------------cccccc------cc----CCceEEEecCCCcEEEeec
Confidence            55 47999999999999987 444 222               234433      33    8999999999999999987


Q ss_pred             CCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-----CCEEEEEeCCCcEEE----EeCCCcEEEEecCCCCCCCce
Q psy1242         428 NARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-----LGLVVSGSQLGPVLV----HTTFGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-----g~~lasgs~Dg~v~i----w~~~g~~~~~l~~~~~~~~v~  498 (540)
                      .+..           ...++ .-..++.+|+++|+     .+.+++|+..| +.+    |......+ .+....+  +|.
T Consensus       101 ~~~~-----------~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG--~I~  164 (846)
T KOG2066|consen  101 FTDD-----------EITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEG--PIH  164 (846)
T ss_pred             cCCc-----------cceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCcc--ceE
Confidence            6532           22222 23567889999998     46899999998 655    43322222 3333444  889


Q ss_pred             EEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee
Q psy1242         499 SVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       499 ~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      ++.|  .|.++|=++|--|++||+. ++.|....
T Consensus       165 ~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~  196 (846)
T KOG2066|consen  165 SIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIP  196 (846)
T ss_pred             EEEe--cCcEEEEecCCCcEEEeccccceeeccC
Confidence            9998  4889988888889999987 55555543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.60  E-value=0.0077  Score=58.75  Aligned_cols=147  Identities=16%  Similarity=0.172  Sum_probs=96.5

Q ss_pred             eeEEEEEEEecCCCEEEEEEecC--------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWD--------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~D--------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                      ....+.+++.++|+ +.++....        |.|..++.. ++.....                ......+.|+|+|   
T Consensus        85 ~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~----------------~~~~~pNGi~~s~---  143 (246)
T PF08450_consen   85 FNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA----------------DGLGFPNGIAFSP---  143 (246)
T ss_dssp             TEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE----------------EEESSEEEEEEET---
T ss_pred             cCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEe----------------cCcccccceEECC---
Confidence            34578889999999 55665433        456666666 5543333                2345678999999   


Q ss_pred             CCCcEEE-EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEE
Q psy1242         408 TADCFIA-SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLR  486 (540)
Q Consensus       408 ~dg~~l~-sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~  486 (540)
                       +++.|+ +-+..+.|..++++.......    ..+....+..-.+....+++..+|.+.++.-..+.|.+++.+|+++.
T Consensus       144 -dg~~lyv~ds~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~  218 (246)
T PF08450_consen  144 -DGKTLYVADSFNGRIWRFDLDADGGELS----NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLR  218 (246)
T ss_dssp             -TSSEEEEEETTTTEEEEEEEETTTCCEE----EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEE
T ss_pred             -cchheeecccccceeEEEecccccccee----eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEE
Confidence             898765 666788888888764321100    00112222333334788999999998888888899999988999999


Q ss_pred             EecCCCCCCCceEEEEe-eCCCEEE
Q psy1242         487 SLDPPSGFASPESVVMS-REGVIVV  510 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fs-pdg~~l~  510 (540)
                      .+..+..  .+++++|. ++.+.|.
T Consensus       219 ~i~~p~~--~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  219 EIELPVP--RPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             EEE-SSS--SEEEEEEESTTSSEEE
T ss_pred             EEcCCCC--CEEEEEEECCCCCEEE
Confidence            9988855  68999994 6656554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.50  E-value=0.0007  Score=65.68  Aligned_cols=127  Identities=16%  Similarity=0.192  Sum_probs=85.6

Q ss_pred             eccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC-----CCEEEEEEcCCCC-
Q psy1242         391 FGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE-----QPVTSVAISAELG-  464 (540)
Q Consensus       391 ~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~-----~~V~~v~~spdg~-  464 (540)
                      ..|.--++++++..    |.+.++++ .|-.|.+|.+....+.        --+--++.|.     ..|++..|+|... 
T Consensus       169 NaH~yhiNSiS~Ns----D~et~lSa-DdLrINLWnl~i~D~s--------FnIVDiKP~nmeeLteVItSaeFhp~~cn  235 (460)
T COG5170         169 NAHPYHINSISFNS----DKETLLSA-DDLRINLWNLEIIDGS--------FNIVDIKPHNMEELTEVITSAEFHPEMCN  235 (460)
T ss_pred             ccceeEeeeeeecC----chheeeec-cceeeeeccccccCCc--------eEEEeccCccHHHHHHHHhhcccCHhHcc
Confidence            57888899999998    88877765 4789999998753321        1122333443     3578888998653 


Q ss_pred             EEEEEeCCCcEEEEeCCCcEE-------E--EecCCC-----C-CCCceEEEEeeCCCEEEEecCCeEEEEecC--CcEE
Q psy1242         465 LVVSGSQLGPVLVHTTFGDLL-------R--SLDPPS-----G-FASPESVVMSREGVIVVNYERGHIAAFTMN--GNRL  527 (540)
Q Consensus       465 ~lasgs~Dg~v~iw~~~g~~~-------~--~l~~~~-----~-~~~v~~l~fspdg~~l~s~~dg~I~lw~~~--g~~l  527 (540)
                      ++.-.+..|+|++.+.....+       .  ++.+-.     + -..|..+.|+++|+++++-+--+|++||++  .+.+
T Consensus       236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi  315 (460)
T COG5170         236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI  315 (460)
T ss_pred             eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc
Confidence            555667789999865421111       1  111100     0 015788999999999999888999999987  5566


Q ss_pred             Eee
Q psy1242         528 RHE  530 (540)
Q Consensus       528 ~~~  530 (540)
                      .+.
T Consensus       316 kTi  318 (460)
T COG5170         316 KTI  318 (460)
T ss_pred             eee
Confidence            665

>KOG4532|consensus

Probab=97.50  E-value=0.0062  Score=58.23  Aligned_cols=139  Identities=9%  Similarity=-0.030  Sum_probs=96.1

Q ss_pred             EEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc--ceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         353 ACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG--VVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       353 asgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~--~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      ..++.|.++++.+++.+..-..+                 |..  .+.++++++    |++++++.+....|-.+.+...
T Consensus       132 ~i~sndht~k~~~~~~~s~~~~~-----------------h~~~~~~ns~~~sn----d~~~~~~Vgds~~Vf~y~id~~  190 (344)
T KOG4532|consen  132 NIASNDHTGKTMVVSGDSNKFAV-----------------HNQNLTQNSLHYSN----DPSWGSSVGDSRRVFRYAIDDE  190 (344)
T ss_pred             eeccCCcceeEEEEecCccccee-----------------eccccceeeeEEcC----CCceEEEecCCCcceEEEeCCc
Confidence            45567888888887643322222                 332  378899999    9999999999999999988753


Q ss_pred             cccccCCCCCCcceE-EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCcEEEE----ecCCCCCCCceEEEEe
Q psy1242         431 TQSIVGETDTPTPRA-TLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--FGDLLRS----LDPPSGFASPESVVMS  503 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~-~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--~g~~~~~----l~~~~~~~~v~~l~fs  503 (540)
                      .         ..... .....++.=.+..|+.....+|+++.||++.||+.  .+.++..    -..|.+  .+..+.|+
T Consensus       191 s---------ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG--a~R~c~Fs  259 (344)
T KOG4532|consen  191 S---------EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG--AFRVCRFS  259 (344)
T ss_pred             c---------ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC--ceEEEEec
Confidence            2         12222 33344455678899999999999999999999975  3334332    234555  78999999


Q ss_pred             eCCC--EEEEe-cCCeEEEEecC
Q psy1242         504 REGV--IVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       504 pdg~--~l~s~-~dg~I~lw~~~  523 (540)
                      +-|.  +|..+ .-+.+++.|+.
T Consensus       260 l~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  260 LYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             CCCcceEEEEecCcceEEEEEcc
Confidence            8665  33333 34778888875

>KOG2314|consensus

Probab=97.50  E-value=0.0099  Score=62.10  Aligned_cols=120  Identities=20%  Similarity=0.121  Sum_probs=80.9

Q ss_pred             cCcceEEEEeccCccCCCcEEEEEeC---CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy1242         393 HYGVVTCLSRSECNITADCFIASGSA---DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       393 h~~~Vt~l~~sp~~~~dg~~l~sgs~---DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg  469 (540)
                      -.+.|...+|-|    .|+.+++-+.   ..++.++.+.+....       .+.+..+..  ...+.+.|+|.|+.++.+
T Consensus       444 lke~vi~FaWEP----~gdkF~vi~g~~~k~tvsfY~~e~~~~~-------~~lVk~~dk--~~~N~vfwsPkG~fvvva  510 (698)
T KOG2314|consen  444 LKESVIAFAWEP----HGDKFAVISGNTVKNTVSFYAVETNIKK-------PSLVKELDK--KFANTVFWSPKGRFVVVA  510 (698)
T ss_pred             cchheeeeeecc----CCCeEEEEEccccccceeEEEeecCCCc-------hhhhhhhcc--cccceEEEcCCCcEEEEE
Confidence            356788999999    7877765543   458888887753221       344455533  456789999999988775


Q ss_pred             ---eCCCcEEEEeCCC-cEEEE-ecCCCCCCCceEEEEeeCCCEEEEec-------CCeEEEEecCCcEEE
Q psy1242         470 ---SQLGPVLVHTTFG-DLLRS-LDPPSGFASPESVVMSREGVIVVNYE-------RGHIAAFTMNGNRLR  528 (540)
Q Consensus       470 ---s~Dg~v~iw~~~g-~~~~~-l~~~~~~~~v~~l~fspdg~~l~s~~-------dg~I~lw~~~g~~l~  528 (540)
                         |..|.+.+.+.+- .+..+ ...|.   ..+.+.|.|.|+|+++++       |.--++|+..|++|.
T Consensus       511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh~---~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~  578 (698)
T KOG2314|consen  511 ALVSRRGDLEFYDTDYADLKDTASPEHF---AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLK  578 (698)
T ss_pred             EecccccceEEEecchhhhhhccCcccc---ccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHH
Confidence               4567887776543 22111 11222   347899999999999854       455689999998765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.48  E-value=0.003  Score=70.58  Aligned_cols=151  Identities=10%  Similarity=0.086  Sum_probs=98.7

Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcc-eEEEEeccCc-cCCCcEEEEEeCCCcEEEE
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGV-VTCLSRSECN-ITADCFIASGSADCTVLLW  425 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~-Vt~l~~sp~~-~~dg~~l~sgs~DgtV~lW  425 (540)
                      .+.||......+.|.-.|++.|+.+..+               ..|.+. |..++=..-. ..+....+.|-.+..+..|
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW---------------~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri  557 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEW---------------KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI  557 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEe---------------ecCCCcceeEecccccccccCCCceEEEECCCceEEe
Confidence            3334444455688999999999999998               444433 5554321100 0012345567778889999


Q ss_pred             EcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCCCCceEEEEee
Q psy1242         426 HWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGFASPESVVMSR  504 (540)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~~~v~~l~fsp  504 (540)
                      |.+......+.     ..... .......+|++-+.+| +||.||.+|.||+++..|..-++ |.+-+.  +|.+|..+.
T Consensus       558 DpR~~~~k~v~-----~~~k~-Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~--pI~~iDvt~  628 (794)
T PF08553_consen  558 DPRLSGNKLVD-----SQSKQ-YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGD--PIIGIDVTA  628 (794)
T ss_pred             ccCCCCCceee-----ccccc-cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCC--CeeEEEecC
Confidence            98864321110     00111 1334567788877666 78999999999999886654333 334344  899999999


Q ss_pred             CCCEEEEecCCeEEEEec
Q psy1242         505 EGVIVVNYERGHIAAFTM  522 (540)
Q Consensus       505 dg~~l~s~~dg~I~lw~~  522 (540)
                      ||++|++..+..|.|++.
T Consensus       629 DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  629 DGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CCcEEEEeecceEEEEEE
Confidence            999999877888888874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.45  E-value=0.0063  Score=70.37  Aligned_cols=169  Identities=15%  Similarity=0.165  Sum_probs=111.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEE----EccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVF----STDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iw----d~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      +..+.+-++... ++.+..+|.|.+.    +..+.. +..+               ..-...|.|++|||    |++.|+
T Consensus        78 ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~-~E~V---------------G~vd~GI~a~~WSP----D~Ella  136 (928)
T PF04762_consen   78 IVSFQYLADSES-LCIALASGDIILVREDPDPDEDE-IEIV---------------GSVDSGILAASWSP----DEELLA  136 (928)
T ss_pred             EEEEEeccCCCc-EEEEECCceEEEEEccCCCCCce-eEEE---------------EEEcCcEEEEEECC----CcCEEE
Confidence            566777778775 5777778988888    444332 2222               22356899999999    999999


Q ss_pred             EEeCCCcEEEEEcCCC-------------cccc----cCCC------CCCcc--------------eEEeccCCCCEEEE
Q psy1242         415 SGSADCTVLLWHWNAR-------------TQSI----VGET------DTPTP--------------RATLTGHEQPVTSV  457 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~-------------~~~~----~~~~------~~~~~--------------~~~l~~h~~~V~~v  457 (540)
                      ....++++.+..-+-.             ....    .|+.      ..++.              ...+. +.+.-..|
T Consensus       137 ~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I  215 (928)
T PF04762_consen  137 LVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI  215 (928)
T ss_pred             EEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence            9999999887753210             0000    0110      00111              01122 44566789


Q ss_pred             EEcCCCCEEEEEeC---C---CcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEE
Q psy1242         458 AISAELGLVVSGSQ---L---GPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRL  527 (540)
Q Consensus       458 ~~spdg~~lasgs~---D---g~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l  527 (540)
                      +|-.||.++|+.+-   .   ..++||++.|.+..+-..-.+  --.+++|.|.|.+||+..    ...|.+|..||-..
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~g--Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh  293 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDG--LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH  293 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCC--ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe
Confidence            99999999998774   3   357899999987666553333  235799999999999853    46788999888766


Q ss_pred             Eeee
Q psy1242         528 RHES  531 (540)
Q Consensus       528 ~~~~  531 (540)
                      ..+.
T Consensus       294 geF~  297 (928)
T PF04762_consen  294 GEFT  297 (928)
T ss_pred             eeEe
Confidence            6654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.38  E-value=0.024  Score=56.29  Aligned_cols=168  Identities=17%  Similarity=0.174  Sum_probs=100.1

Q ss_pred             EEecCCCEEEEEE----ecCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         343 VTTVDSRFLLACG----FWDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       343 ~~spdg~~llasg----s~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +||+||++|+++-    ...|.|-|||.. +.+.+..+               ..|.-.-..+.+.|    ||+.|+.+-
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~---------------~s~GIGPHel~l~p----DG~tLvVAN  117 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF---------------PSHGIGPHELLLMP----DGETLVVAN  117 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe---------------cCCCcChhhEEEcC----CCCEEEEEc
Confidence            5789999876662    335789999998 45566666               44444445677888    887766652


Q ss_pred             C-------CCcEEEEEcCCCcccccC-CCCCCcceEE--e--ccCCCCEEEEEEcCCCCEEEEEeCCCc-------EEEE
Q psy1242         418 A-------DCTVLLWHWNARTQSIVG-ETDTPTPRAT--L--TGHEQPVTSVAISAELGLVVSGSQLGP-------VLVH  478 (540)
Q Consensus       418 ~-------DgtV~lWd~~~~~~~~~~-~~~~~~~~~~--l--~~h~~~V~~v~~spdg~~lasgs~Dg~-------v~iw  478 (540)
                      .       .|..++ ++.+.....+- +..+++.+..  +  .-|...|..+++.++|..++..-..|.       |-++
T Consensus       118 GGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~  196 (305)
T PF07433_consen  118 GGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH  196 (305)
T ss_pred             CCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE
Confidence            1       133333 22222211110 0122444443  4  347778999999999876665544443       1223


Q ss_pred             eCCCcEEEEecCCCC-----CCCceEEEEeeCCCEEEEec--CCeEEEEecC-CcEEEeee
Q psy1242         479 TTFGDLLRSLDPPSG-----FASPESVVMSREGVIVVNYE--RGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       479 ~~~g~~~~~l~~~~~-----~~~v~~l~fspdg~~l~s~~--dg~I~lw~~~-g~~l~~~~  531 (540)
                      .. ++.+..+..+..     ...+-+|+++++|..++.++  .+.+.+||.. |+++....
T Consensus       197 ~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  197 RR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             cC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            33 332333433221     11577999999999887754  6899999876 77776554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.36  E-value=0.0016  Score=68.76  Aligned_cols=72  Identities=13%  Similarity=0.130  Sum_probs=58.5

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .+.|++++|+.+. ++.|+.||+|.+||...+-..  .               ....-..+.++|+|    +|..+++|+
T Consensus       261 ~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~--~---------------~ka~~~P~~iaWHp----~gai~~V~s  318 (545)
T PF11768_consen  261 QVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTL--L---------------AKAEFIPTLIAWHP----DGAIFVVGS  318 (545)
T ss_pred             cceEEecCcccce-EEEEecCCeEEEEEcCCCeee--e---------------eeecccceEEEEcC----CCcEEEEEc
Confidence            3788899999997 688999999999998765322  2               22345678999999    999999999


Q ss_pred             CCCcEEEEEcCCCc
Q psy1242         418 ADCTVLLWHWNART  431 (540)
Q Consensus       418 ~DgtV~lWd~~~~~  431 (540)
                      .-|.+.+||+....
T Consensus       319 ~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  319 EQGELQCFDMALSP  332 (545)
T ss_pred             CCceEEEEEeecCc
Confidence            99999999987643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.32  E-value=0.0087  Score=61.93  Aligned_cols=153  Identities=11%  Similarity=0.063  Sum_probs=100.3

Q ss_pred             EEEEEEEecCCCEEEEEEec----------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         338 RHNCFVTTVDSRFLLACGFW----------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~----------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                      ..+.+.|.+.|++|++-.-.          ..++.|++++ ++.+...               .+-.++|...+|.|   
T Consensus       224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~---------------~~~~~pVhdf~W~p---  284 (561)
T COG5354         224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVE---------------KDLKDPVHDFTWEP---  284 (561)
T ss_pred             cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-cccccee---------------ccccccceeeeecc---
Confidence            34566777778775543321          2345555554 2222222               34578999999999   


Q ss_pred             CCCcEEEEE--eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCC
Q psy1242         408 TADCFIASG--SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL---GPVLVHTTFG  482 (540)
Q Consensus       408 ~dg~~l~sg--s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D---g~v~iw~~~g  482 (540)
                       +++.+++.  -.+.++.++|++.            ...  +..-...=..+.|||.+++++.++-|   |.+.+|+..|
T Consensus       285 -~S~~F~vi~g~~pa~~s~~~lr~------------Nl~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         285 -LSSRFAVISGYMPASVSVFDLRG------------NLR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             -cCCceeEEecccccceeeccccc------------ceE--EecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence             67666554  4788999999875            222  22334444567899999999987755   5578898866


Q ss_pred             cEEE--EecCCCCCCCceEEEEeeCCCEEEEe-------cCCeEEEEecCCcEEE
Q psy1242         483 DLLR--SLDPPSGFASPESVVMSREGVIVVNY-------ERGHIAAFTMNGNRLR  528 (540)
Q Consensus       483 ~~~~--~l~~~~~~~~v~~l~fspdg~~l~s~-------~dg~I~lw~~~g~~l~  528 (540)
                      +.+.  .+.+...    .-+.|+|||+++.+.       .|..|.+|++.|..+-
T Consensus       350 rf~~~~~~~~~n~----s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         350 RFKVAGAFNGLNT----SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             ceEEEEEeecCCc----eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            6543  4544432    567899999988774       2788999998876543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.29  E-value=0.018  Score=60.01  Aligned_cols=131  Identities=14%  Similarity=0.063  Sum_probs=81.8

Q ss_pred             EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242         352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNART  431 (540)
Q Consensus       352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~  431 (540)
                      +..++.+|.+..+|.++|+.+...               . .. .......      ++..++.++.||.+..+|..++.
T Consensus       244 vy~~~~~g~l~a~d~~tG~~~W~~---------------~-~~-~~~~p~~------~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       244 VYAVSYQGRVAALDLRSGRVLWKR---------------D-AS-SYQGPAV------DDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             EEEEEcCCEEEEEECCCCcEEEee---------------c-cC-CccCceE------eCCEEEEECCCCeEEEEECCCCc
Confidence            456677999999999999877655               1 11 1112222      45677888899999999986532


Q ss_pred             ccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEE
Q psy1242         432 QSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIV  509 (540)
Q Consensus       432 ~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l  509 (540)
                                 .+-..... .....+...  .+..+++++.+|.+.+++. +|+.+.+++.+..  .+..--...+++++
T Consensus       301 -----------~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~--~~~~sp~~~~~~l~  365 (377)
T TIGR03300       301 -----------ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS--GIASPPVVVGDGLL  365 (377)
T ss_pred             -----------EEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC--ccccCCEEECCEEE
Confidence                       22111111 111122222  3568889999999988765 8999988876654  22222223456666


Q ss_pred             EEecCCeEEEE
Q psy1242         510 VNYERGHIAAF  520 (540)
Q Consensus       510 ~s~~dg~I~lw  520 (540)
                      +.+.||.|+.|
T Consensus       366 v~~~dG~l~~~  376 (377)
T TIGR03300       366 VQTRDGDLYAF  376 (377)
T ss_pred             EEeCCceEEEe
Confidence            67778888765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714|consensus

Probab=97.29  E-value=0.00062  Score=64.61  Aligned_cols=74  Identities=12%  Similarity=0.177  Sum_probs=61.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++-+|..+.++++|+.||.+.+||.+.......              .|..|+..+.-+.|+|.   ++..|++++.
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S--------------~l~ahk~~i~eV~FHpk---~p~~Lft~se  244 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS--------------LLKAHKAEIWEVHFHPK---NPEHLFTCSE  244 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHH--------------HHHHhhhhhhheeccCC---CchheeEecC
Confidence            556666888888999999999999999987632221              23789999999999995   7899999999


Q ss_pred             CCcEEEEEcCC
Q psy1242         419 DCTVLLWHWNA  429 (540)
Q Consensus       419 DgtV~lWd~~~  429 (540)
                      ||.+.-||..+
T Consensus       245 dGslw~wdas~  255 (319)
T KOG4714|consen  245 DGSLWHWDAST  255 (319)
T ss_pred             CCcEEEEcCCC
Confidence            99999999764

>KOG2066|consensus

Probab=97.25  E-value=0.0084  Score=65.23  Aligned_cols=148  Identities=15%  Similarity=0.124  Sum_probs=101.2

Q ss_pred             ecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc-cCCCcEEEEEeCCCcEE
Q psy1242         345 TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN-ITADCFIASGSADCTVL  423 (540)
Q Consensus       345 spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~-~~dg~~l~sgs~DgtV~  423 (540)
                      ..+|++ +++|+.||+|.|-.+-+.+...++                .-..++.+|+++|.. ....+.+++||..| +.
T Consensus        80 ~~~Gey-~asCS~DGkv~I~sl~~~~~~~~~----------------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lv  141 (846)
T KOG2066|consen   80 ILEGEY-VASCSDDGKVVIGSLFTDDEITQY----------------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV  141 (846)
T ss_pred             ccCCce-EEEecCCCcEEEeeccCCccceeE----------------ecCCcceeEEeccchhhhhhhheeecCcce-EE
Confidence            357887 799999999999999888776655                235688999999921 11256899999988 76


Q ss_pred             EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC----CCce
Q psy1242         424 LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF----ASPE  498 (540)
Q Consensus       424 lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~----~~v~  498 (540)
                      +..-+-...         +....+..-.++|.++.|.  |.++|-++.+|. +|++. +++.+..++.+...    ....
T Consensus       142 L~er~wlgn---------k~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv-~vyd~~~~~~l~~i~~p~~~~R~e~fpp  209 (846)
T KOG2066|consen  142 LSERNWLGN---------KDSVVLSEGEGPIHSIKWR--GNLIAWANDDGV-KVYDTPTRQRLTNIPPPSQSVRPELFPP  209 (846)
T ss_pred             EehhhhhcC---------ccceeeecCccceEEEEec--CcEEEEecCCCc-EEEeccccceeeccCCCCCCCCcccCCC
Confidence            665321110         1112456677899999995  778888887764 77654 66666666554331    1356


Q ss_pred             EEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         499 SVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       499 ~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      .+.|.++.+.++.. ..+|++..+.
T Consensus       210 hl~W~~~~~LVIGW-~d~v~i~~I~  233 (846)
T KOG2066|consen  210 HLHWQDEDRLVIGW-GDSVKICSIK  233 (846)
T ss_pred             ceEecCCCeEEEec-CCeEEEEEEe
Confidence            89998887776664 3466666665

>KOG2114|consensus

Probab=97.19  E-value=0.016  Score=63.68  Aligned_cols=120  Identities=16%  Similarity=0.135  Sum_probs=82.3

Q ss_pred             cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy1242         393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL  472 (540)
Q Consensus       393 h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D  472 (540)
                      ...++++++++.    +-+.++.|-.+|.|....-+...       +.+........-..+|+++++..++..++-+..-
T Consensus       124 ~~~p~s~l~Vs~----~l~~Iv~Gf~nG~V~~~~GDi~R-------Drgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt  192 (933)
T KOG2114|consen  124 NPSPASSLAVSE----DLKTIVCGFTNGLVICYKGDILR-------DRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT  192 (933)
T ss_pred             CCCcceEEEEEc----cccEEEEEecCcEEEEEcCcchh-------ccccceeeeccCCCCceeeEEecCCceeEEEEec
Confidence            356789999998    88899999999999998644321       1122223333346799999999998874444444


Q ss_pred             CcEEEEeCCCcE--EEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCc
Q psy1242         473 GPVLVHTTFGDL--LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  525 (540)
Q Consensus       473 g~v~iw~~~g~~--~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~  525 (540)
                      ..|.++..+|+.  +..+..++.  +..|.++++....++++.+..|.+|+.+|+
T Consensus       193 ~~V~~y~l~gr~p~~~~ld~~G~--~lnCss~~~~t~qfIca~~e~l~fY~sd~~  245 (933)
T KOG2114|consen  193 EQVMLYSLSGRTPSLKVLDNNGI--SLNCSSFSDGTYQFICAGSEFLYFYDSDGR  245 (933)
T ss_pred             ceeEEEEecCCCcceeeeccCCc--cceeeecCCCCccEEEecCceEEEEcCCCc
Confidence            567788665654  455665555  678888887766566666677888877754

>smart00320 WD40 WD40 repeats

Probab=97.12  E-value=0.0013  Score=42.15  Aligned_cols=35  Identities=37%  Similarity=0.572  Sum_probs=31.0

Q ss_pred             EEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         388 QIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       388 ~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      ..+.+|...|+++.|++    ++..+++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~----~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSP----DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECC----CCCEEEEecCCCeEEEcC
Confidence            34478899999999999    789999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0309|consensus

Probab=97.00  E-value=0.0018  Score=69.45  Aligned_cols=137  Identities=13%  Similarity=0.056  Sum_probs=97.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ++.+.|+|...-++|+++-|-.+..||+++.. .+...               .......+.|+|+--   ++. +...+
T Consensus       117 itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~---------------~~w~s~asqVkwnyk---~p~-vlass  177 (1081)
T KOG0309|consen  117 ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST---------------SSWRSAASQVKWNYK---DPN-VLASS  177 (1081)
T ss_pred             eeccccCCCCCcceeeccccccceeeeccCCCcceeee---------------ecccccCceeeeccc---Ccc-hhhhc
Confidence            56667788888889999999999999998754 33333               334456678899872   444 44556


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCc---EEEEecCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTTFGD---LLRSLDPPSG  493 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~~g~---~~~~l~~~~~  493 (540)
                      ....|.+||.+.+          ..++..+++|...|..++|+.- ...+.+++.||+|++|+....   .-++.. ...
T Consensus       178 hg~~i~vwd~r~g----------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~  246 (1081)
T KOG0309|consen  178 HGNDIFVWDLRKG----------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNF  246 (1081)
T ss_pred             cCCceEEEeccCC----------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccC
Confidence            7788999998864          3688999999999999998753 346789999999999976322   222221 122


Q ss_pred             CCCceEEEEeeCCC
Q psy1242         494 FASPESVVMSREGV  507 (540)
Q Consensus       494 ~~~v~~l~fspdg~  507 (540)
                        +|+.-++.|=|.
T Consensus       247 --piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  247 --PIWRGRYLPFGE  258 (1081)
T ss_pred             --cceeccccccCc
Confidence              667777777544

>smart00320 WD40 WD40 repeats

Probab=96.92  E-value=0.0024  Score=40.84  Aligned_cols=38  Identities=37%  Similarity=0.420  Sum_probs=33.9

Q ss_pred             cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         442 TPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       442 ~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      .+...+..|...|.+++|++.+..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45677788999999999999999999999999999984

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.91  E-value=0.1  Score=53.47  Aligned_cols=115  Identities=13%  Similarity=0.047  Sum_probs=76.1

Q ss_pred             CCCEEEEEEec----CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC----
Q psy1242         347 DSRFLLACGFW----DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA----  418 (540)
Q Consensus       347 dg~~llasgs~----Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~----  418 (540)
                      ++++++++-..    .++|.+.|..+++.+.++.               .-..+- .+ ++|    ||+.|..+..    
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~---------------~G~~P~-~~-~sp----Dg~~lyva~~~~~R   69 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTD---------------GGFLPN-PV-VAS----DGSFFAHASTVYSR   69 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEE---------------ccCCCc-ee-ECC----CCCEEEEEeccccc
Confidence            33444444433    3899999999999988883               222222 24 899    8888766554    


Q ss_pred             ------CCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEe-C-CCcEEEE-eCCC
Q psy1242         419 ------DCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGS-Q-LGPVLVH-TTFG  482 (540)
Q Consensus       419 ------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs-~-Dg~v~iw-~~~g  482 (540)
                            +..|.+||..+.           +.+..+.--       ...-..++++|||++++... . +..|-+. ..++
T Consensus        70 ~~~G~~~d~V~v~D~~t~-----------~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~  138 (352)
T TIGR02658        70 IARGKRTDYVEVIDPQTH-----------LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK  138 (352)
T ss_pred             cccCCCCCEEEEEECccC-----------cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence                  789999998773           344444321       12234678999999888765 3 6777665 4588


Q ss_pred             cEEEEecCCCC
Q psy1242         483 DLLRSLDPPSG  493 (540)
Q Consensus       483 ~~~~~l~~~~~  493 (540)
                      +.+..+..+.+
T Consensus       139 kvv~ei~vp~~  149 (352)
T TIGR02658       139 AFVRMMDVPDC  149 (352)
T ss_pred             cEEEEEeCCCC
Confidence            88888876553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2395|consensus

Probab=96.91  E-value=0.022  Score=59.48  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=99.7

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE-----EEEEeCCC
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF-----IASGSADC  420 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~-----l~sgs~Dg  420 (540)
                      .+...|+.+|..-..+.-.|++.|+.+...               .-|.+ |+-+.+.|..  .+..     -+.|-.|.
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEW---------------k~~~d-i~mv~~t~d~--K~~Ql~~e~TlvGLs~n  404 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEW---------------KFEDD-INMVDITPDF--KFAQLTSEQTLVGLSDN  404 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEe---------------eccCC-cceeeccCCc--chhcccccccEEeecCC
Confidence            345556777777788999999999999888               44444 6666666621  1111     23455678


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEeccCC----CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCCC
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLTGHE----QPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGFA  495 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~----~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~~  495 (540)
                      .|.-||.+....         ..+....+|.    ..-.|.+-..+ .+||.||.+|.|+++++.+....+ +.+-..  
T Consensus       405 ~vfriDpRv~~~---------~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--  472 (644)
T KOG2395|consen  405 SVFRIDPRVQGK---------NKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGD--  472 (644)
T ss_pred             ceEEecccccCc---------ceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCC--
Confidence            888899875321         1222333332    23456655544 488999999999999887665443 444444  


Q ss_pred             CceEEEEeeCCCEEEEecCCeEEEEec
Q psy1242         496 SPESVVMSREGVIVVNYERGHIAAFTM  522 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~~dg~I~lw~~  522 (540)
                      +|..|..+.+|++|++..+..+.+-++
T Consensus       473 ~I~hVdvtadGKwil~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  473 AIKHVDVTADGKWILATCKTYLLLIDT  499 (644)
T ss_pred             ceeeEEeeccCcEEEEecccEEEEEEE
Confidence            799999999999999877888877764

>KOG1645|consensus

Probab=96.86  E-value=0.034  Score=56.18  Aligned_cols=74  Identities=11%  Similarity=0.068  Sum_probs=62.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+++||..+-|+..++.++.|+|.|+++...+..+               ..| ..+.+++|+-.   +..+|..|..
T Consensus       196 IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy---------------~a~-~~~wSC~wDld---e~h~IYaGl~  256 (463)
T KOG1645|consen  196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY---------------IAY-NQIWSCCWDLD---ERHVIYAGLQ  256 (463)
T ss_pred             hhhhccCccccceeeeeccCceEEEEecccceeeehe---------------ecc-CCceeeeeccC---CcceeEEecc
Confidence            4567789998878899999999999999988887777               556 78999999873   5678888889


Q ss_pred             CCcEEEEEcCCCc
Q psy1242         419 DCTVLLWHWNART  431 (540)
Q Consensus       419 DgtV~lWd~~~~~  431 (540)
                      .|.|.|+|++..+
T Consensus       257 nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  257 NGMVLVYDMRQPE  269 (463)
T ss_pred             CceEEEEEccCCC
Confidence            9999999998654

>KOG1008|consensus

Probab=96.84  E-value=0.0003  Score=74.26  Aligned_cols=157  Identities=16%  Similarity=0.193  Sum_probs=106.6

Q ss_pred             EEEEEEecCCC-EEEEEEecCCcEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         339 HNCFVTTVDSR-FLLACGFWDNSFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       339 ~~~~~~spdg~-~llasgs~Dgsv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      +.|+++.-+.. .|++.|..+|.|-+-.++...-.  ...               .+|....++++|++.   |.+.|+.
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t---------------p~~ar~Ct~lAwneL---Dtn~LAa  120 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT---------------PGYARPCTSLAWNEL---DTNHLAA  120 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccccceec---------------ccccccccccccccc---cHHHHHh
Confidence            34555444433 58899999999998877643221  122               678899999999995   6778887


Q ss_pred             Ee----CCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecC
Q psy1242         416 GS----ADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDP  490 (540)
Q Consensus       416 gs----~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~  490 (540)
                      |-    .|..+.|||+...-..       ++..-.+. +......+++|-.+.+++.+|.....+.+.+....+.+....
T Consensus       121 gldkhrnds~~~Iwdi~s~ltv-------Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv  193 (783)
T KOG1008|consen  121 GLDKHRNDSSLKIWDINSLLTV-------PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV  193 (783)
T ss_pred             hhhhhcccCCccceecccccCC-------CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh
Confidence            73    3778999998764111       11111111 244456688999899999999998888887654333332222


Q ss_pred             CCCCCCceEEEEee-CCCEEEEecCCeEEEEec
Q psy1242         491 PSGFASPESVVMSR-EGVIVVNYERGHIAAFTM  522 (540)
Q Consensus       491 ~~~~~~v~~l~fsp-dg~~l~s~~dg~I~lw~~  522 (540)
                      ...  .+..+.+.| .+.++++..||.|.+||.
T Consensus       194 nTk--~vqG~tVdp~~~nY~cs~~dg~iAiwD~  224 (783)
T KOG1008|consen  194 NTK--YVQGITVDPFSPNYFCSNSDGDIAIWDT  224 (783)
T ss_pred             hhh--hcccceecCCCCCceeccccCceeeccc
Confidence            222  456788888 888999988999999993

>KOG1832|consensus

Probab=96.74  E-value=0.0013  Score=71.76  Aligned_cols=215  Identities=11%  Similarity=0.029  Sum_probs=132.3

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC-CccccccC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA-PVPKRHLG  328 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~-~~~~~~~~  328 (540)
                      |.+.-|...+.....-++-|+..+.|+++++.++.. ..+..|...+    ..+.-+.||.+..+++.... ....|..+
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sav----T~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAV----TLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccc----ccccccCCcceeeeeccccCchHHHhccc
Confidence            344455566777777788889999999999987663 3344565433    34567788866655544444 23445555


Q ss_pred             CCcCcceeeE-EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         329 DNFSQKLRVR-HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       329 ~~~~~~~~v~-~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                      ..++...... ..|+.|+....+ -+.|..-....|||++++..+.++-...           .+....-++..|+|   
T Consensus      1176 s~~~~~Hsf~ed~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~-----------~~~~y~~n~a~FsP--- 1240 (1516)
T KOG1832|consen 1176 STGGPRHSFDEDKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDT-----------VTSSYSNNLAHFSP--- 1240 (1516)
T ss_pred             cccCccccccccceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcc-----------hhhhhhccccccCC---
Confidence            4444333222 566777766543 3445555678999999998776641100           12233347889999   


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242         408 TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR  486 (540)
Q Consensus       408 ~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~  486 (540)
                       +..+++-   ||  .+||.+..           +.++.+......+. =.|+|.|..++.-+     -||+. +-++++
T Consensus      1241 -~D~LIln---dG--vLWDvR~~-----------~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1241 -CDTLILN---DG--VLWDVRIP-----------EAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             -CcceEee---Cc--eeeeeccH-----------HHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHh
Confidence             5666653   44  47998863           34444443332222 25899988776655     36765 777777


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                      +...-..    +.+.|+..|.++..
T Consensus      1298 ~VP~Ldq----c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1298 SVPSLDQ----CAVTFNSTGDVMYA 1318 (1516)
T ss_pred             cCccccc----eEEEeccCccchhh
Confidence            6655443    67889988887765

>KOG4640|consensus

Probab=96.74  E-value=0.0066  Score=64.44  Aligned_cols=85  Identities=18%  Similarity=0.296  Sum_probs=69.5

Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCce-EEEEeeCCCEEEEe-cCCeEEEEecC-CcEEE
Q psy1242         452 QPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPE-SVVMSREGVIVVNY-ERGHIAAFTMN-GNRLR  528 (540)
Q Consensus       452 ~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~-~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~  528 (540)
                      ..+.-+.|+|.-.++|.+..+|.+.++-.+.+.+.++..|..  .+. +++|.|||+.||.| .||+|.+.|+. |..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~--~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGE--NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCC--ccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            457788999999999999999999998767888888987766  445 99999999999996 68999999998 66666


Q ss_pred             e--eecCCccee
Q psy1242         529 H--ESHNDNLQK  538 (540)
Q Consensus       529 ~--~~~~~~V~~  538 (540)
                      .  +.-+..|.+
T Consensus        99 ~~~~s~e~~is~  110 (665)
T KOG4640|consen   99 SFLFSVETDISK  110 (665)
T ss_pred             ccccccccchhe
Confidence            6  344555544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.56  Score=47.31  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=73.4

Q ss_pred             eccCcceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE
Q psy1242         391 FGHYGVVTCLSRSECNITADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       391 ~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg  469 (540)
                      ..|-..-+.|+|||    |++.|..+. ..+.|.-+++....... .   .......+....+..-.++...+|.+.+++
T Consensus       159 ~~~~~~~NGla~Sp----Dg~tly~aDT~~~~i~r~~~d~~~g~~-~---~~~~~~~~~~~~G~PDG~~vDadG~lw~~a  230 (307)
T COG3386         159 DDDLTIPNGLAFSP----DGKTLYVADTPANRIHRYDLDPATGPI-G---GRRGFVDFDEEPGLPDGMAVDADGNLWVAA  230 (307)
T ss_pred             cCcEEecCceEECC----CCCEEEEEeCCCCeEEEEecCcccCcc-C---CcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence            45556678899999    997766654 45777777765311111 0   011122333345666778888899888655


Q ss_pred             eCCC-cEEEEeCCCcEEEEecCCCCCCCceEEEEe-eCCCEEEE
Q psy1242         470 SQLG-PVLVHTTFGDLLRSLDPPSGFASPESVVMS-REGVIVVN  511 (540)
Q Consensus       470 s~Dg-~v~iw~~~g~~~~~l~~~~~~~~v~~l~fs-pdg~~l~s  511 (540)
                      -.+| .|.+++.+|+++..+..+..  .+++++|- ++.+.|..
T Consensus       231 ~~~g~~v~~~~pdG~l~~~i~lP~~--~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         231 VWGGGRVVRFNPDGKLLGEIKLPVK--RPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             ccCCceEEEECCCCcEEEEEECCCC--CCccceEeCCCcCEEEE
Confidence            5554 78889888999999998865  57888884 55665544

>KOG1920|consensus

Probab=96.71  E-value=0.091  Score=60.02  Aligned_cols=169  Identities=13%  Similarity=0.091  Sum_probs=104.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+.+-.+... ++.+..+|.|.+-|.++.... ..               ..-.+.|.+++|+|    |++.++-.+.
T Consensus        71 i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~e-iv---------------g~vd~GI~aaswS~----Dee~l~liT~  129 (1265)
T KOG1920|consen   71 IVSVQFLADTNS-ICVITALGDIILVDPETLELE-IV---------------GNVDNGISAASWSP----DEELLALITG  129 (1265)
T ss_pred             eEEEEEecccce-EEEEecCCcEEEEccccccee-ee---------------eeccCceEEEeecC----CCcEEEEEeC
Confidence            566666777775 466667888888887765432 11               22357899999999    9999998888


Q ss_pred             CCcEEEEEcCCCc--cccc-------CCC---CCCcceEEecc---------------------CCCCEEEEEEcCCCCE
Q psy1242         419 DCTVLLWHWNART--QSIV-------GET---DTPTPRATLTG---------------------HEQPVTSVAISAELGL  465 (540)
Q Consensus       419 DgtV~lWd~~~~~--~~~~-------~~~---~~~~~~~~l~~---------------------h~~~V~~v~~spdg~~  465 (540)
                      +.++.+-+-.-..  -..+       ++.   --++.-..+.|                     -.+.=+.|+|--||++
T Consensus       130 ~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~  209 (1265)
T KOG1920|consen  130 RQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY  209 (1265)
T ss_pred             CcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE
Confidence            8888766531100  0000       000   00000011111                     1112246899999999


Q ss_pred             EEEE-----eCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE----ecCCeEEEEecCCcEEEee
Q psy1242         466 VVSG-----SQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN----YERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       466 lasg-----s~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s----~~dg~I~lw~~~g~~l~~~  530 (540)
                      +|+.     .....++||+..|.+-.+-....+  --.+++|-|.|..+++    .+++.|.+|..||-...++
T Consensus       210 fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~--l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f  281 (1265)
T KOG1920|consen  210 FAVSFVESETGTRKIRVYDREGALNSTSEPVEG--LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF  281 (1265)
T ss_pred             EEEEEEeccCCceeEEEecccchhhcccCcccc--cccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc
Confidence            8873     333789999988655433322222  2368999999999998    3577899999998655544

>KOG1832|consensus

Probab=96.69  E-value=0.0018  Score=70.66  Aligned_cols=139  Identities=17%  Similarity=0.230  Sum_probs=97.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      -+|++|+-+.++ |+.|+..|.|+++++.+|......               .+|...|+-+.=+.    ||..+++.+.
T Consensus      1104 fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~s~---------------ncH~SavT~vePs~----dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEESV---------------NCHQSAVTLVEPSV----DGSTQLTSSS 1163 (1516)
T ss_pred             eeeEEeecCCce-EEeeeccceEEEEEccCccccccc---------------cccccccccccccC----Ccceeeeecc
Confidence            689999998887 699999999999999999887777               78999999998887    8888777664


Q ss_pred             CC--cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEE-ecCCCCC
Q psy1242         419 DC--TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRS-LDPPSGF  494 (540)
Q Consensus       419 Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~-l~~~~~~  494 (540)
                      -.  ...+|++...          +.+.+++.+    -.++.|+...+.-+.|+......+++. ++..+.+ +.+..+.
T Consensus      1164 ~S~PlsaLW~~~s~----------~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1164 SSSPLSALWDASST----------GGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred             ccCchHHHhccccc----------cCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh
Confidence            33  4678987541          345555543    346788876554455555556677754 7776655 3321110


Q ss_pred             -CCceEEEEeeCCCEEEE
Q psy1242         495 -ASPESVVMSREGVIVVN  511 (540)
Q Consensus       495 -~~v~~l~fspdg~~l~s  511 (540)
                       ..-+.+.|+|+...+.-
T Consensus      1230 ~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred             hhhccccccCCCcceEee
Confidence             01256788998877654

>KOG4649|consensus

Probab=96.66  E-value=0.17  Score=48.54  Aligned_cols=119  Identities=13%  Similarity=0.057  Sum_probs=79.8

Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV  422 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV  422 (540)
                      .+.+|.+.+++.|+..+.+..-|.++|+....-                --.+++-|=+.-     -|++++.|+..|.+
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~----------------ilg~RiE~sa~v-----vgdfVV~GCy~g~l   75 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA----------------ILGVRIECSAIV-----VGDFVVLGCYSGGL   75 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEeeh----------------hhCceeeeeeEE-----ECCEEEEEEccCcE
Confidence            345677778999999999999999999876543                112333333322     26689999999999


Q ss_pred             EEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEEecCCCC
Q psy1242         423 LLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRSLDPPSG  493 (540)
Q Consensus       423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~l~~~~~  493 (540)
                      .+.+..++.           ....+..-+.-=......+++.++..|+.|++...-| .+..++...+.+.+
T Consensus        76 Yfl~~~tGs-----------~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~  136 (354)
T KOG4649|consen   76 YFLCVKTGS-----------QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG  136 (354)
T ss_pred             EEEEecchh-----------heeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc
Confidence            999988743           2222222211111234567899999999999997754 46667777766554

>KOG3621|consensus

Probab=96.66  E-value=0.011  Score=63.64  Aligned_cols=116  Identities=21%  Similarity=0.284  Sum_probs=80.5

Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+.-+|+  ...+++ ++.|+.-|.+.+|+-..|+....-+              .+-.+.+..+..++    +..++|.
T Consensus        35 ~v~lTc~--dst~~~-l~~GsS~G~lyl~~R~~~~~~~~~~--------------~~~~~~~~~~~vs~----~e~lvAa   93 (726)
T KOG3621|consen   35 RVKLTCV--DATEEY-LAMGSSAGSVYLYNRHTGEMRKLKN--------------EGATGITCVRSVSS----VEYLVAA   93 (726)
T ss_pred             eEEEEEe--ecCCce-EEEecccceEEEEecCchhhhcccc--------------cCccceEEEEEecc----hhHhhhh
Confidence            3345565  456776 6889999999999987665443221              23345556667787    7788889


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                      |+..|.|.++.++.....      ....+... ..|...|+|++|++++..+.+|...|+|...
T Consensus        94 gt~~g~V~v~ql~~~~p~------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~  151 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPR------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT  151 (726)
T ss_pred             hcCCceEEeehhhccCCC------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence            999999999987652210      00111111 2377899999999999999999999988553

>KOG0882|consensus

Probab=96.66  E-value=0.02  Score=58.44  Aligned_cols=164  Identities=17%  Similarity=0.123  Sum_probs=103.9

Q ss_pred             EEEEEecCCCEEEEEEec-CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EE-EEE
Q psy1242         340 NCFVTTVDSRFLLACGFW-DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FI-ASG  416 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~-Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l-~sg  416 (540)
                      ..++.+-+|. ++.+++. |.+++++|+.+-..+..++.             .--.+.+.++ -++.   |.. .| ++.
T Consensus        57 ~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL-------------~~lPg~a~wv-~skG---d~~s~IAVs~  118 (558)
T KOG0882|consen   57 LSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKL-------------VDLPGFAEWV-TSKG---DKISLIAVSL  118 (558)
T ss_pred             Hhhhccccce-eEeeccCcccceeEEEeeccchhhhccc-------------ccCCCceEEe-cCCC---CeeeeEEeec
Confidence            3444577887 6788777 99999999987655433310             1111222221 1220   111 22 223


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-------EEEEec
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGD-------LLRSLD  489 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~-------~~~~l~  489 (540)
                      -.++.+.+.|-....         .+....-.-|..+|.++.+++.++.++|....|.|.-|...+.       +...++
T Consensus       119 ~~sg~i~VvD~~~d~---------~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K  189 (558)
T KOG0882|consen  119 FKSGKIFVVDGFGDF---------CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK  189 (558)
T ss_pred             ccCCCcEEECCcCCc---------CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccc
Confidence            357888999855422         1233333558999999999999999999999999999977651       111122


Q ss_pred             CC-------CCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEee
Q psy1242         490 PP-------SGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       490 ~~-------~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~  530 (540)
                      ..       +....+.++.|+|+|..+.+ +.|..|+++... |+++..+
T Consensus       190 ~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  190 HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            11       11115689999999999988 789999999987 5554444

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.62  E-value=0.17  Score=42.51  Aligned_cols=96  Identities=27%  Similarity=0.187  Sum_probs=63.1

Q ss_pred             EecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEE
Q psy1242         344 TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVL  423 (540)
Q Consensus       344 ~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~  423 (540)
                      +.-||+.-|+.|+.|..||+|+-+  +.+..+                .-.+.|++++-..     +..++.+-.+|||-
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei----------------~e~~~v~~L~~~~-----~~~F~Y~l~NGTVG   66 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEI----------------TETDKVTSLCSLG-----GGRFAYALANGTVG   66 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeCC--cEEEEE----------------ecccceEEEEEcC-----CCEEEEEecCCEEE
Confidence            455666668999999999999843  555555                2356788887765     46799999999999


Q ss_pred             EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC---CC-CEEEEEeCCCcEE
Q psy1242         424 LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA---EL-GLVVSGSQLGPVL  476 (540)
Q Consensus       424 lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp---dg-~~lasgs~Dg~v~  476 (540)
                      +++-...-.            + .+ -+..++++++..   || .-|++|-.+|.|-
T Consensus        67 vY~~~~RlW------------R-iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   67 VYDRSQRLW------------R-IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEeCcceee------------e-ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            998543211            1 11 222355665543   22 2677887777763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.56  E-value=0.38  Score=46.08  Aligned_cols=143  Identities=17%  Similarity=0.131  Sum_probs=81.3

Q ss_pred             EEEEecCCcEEEEEccCCeEEEEE-ecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         352 LACGFWDNSFRVFSTDNARIVQII-FGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       352 lasgs~Dgsv~iwd~~~g~~~~~l-~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      ++.+..|+.+..+|..+|+.+... ....           ... ..........    ++..++.+..++.|..+|..++
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-----------~~~-~~~~~~~~~~----~~~~~~~~~~~g~l~~~d~~tG  142 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSS-----------PPA-GVRSSSSPAV----DGDRLYVGTSSGKLVALDPKTG  142 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SS-----------CTC-STB--SEEEE----ETTEEEEEETCSEEEEEETTTT
T ss_pred             cccccceeeeEecccCCcceeeeeccccc-----------ccc-ccccccCceE----ecCEEEEEeccCcEEEEecCCC
Confidence            355557889999999999988773 1110           000 1122223333    4678888888999999998763


Q ss_pred             cccccCCCCCCcceEEeccCCC----------CEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCcEEEEecCCCCCCCceE
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQ----------PVTSVAISAELGLVVSGSQLGP-VLVHTTFGDLLRSLDPPSGFASPES  499 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~----------~V~~v~~spdg~~lasgs~Dg~-v~iw~~~g~~~~~l~~~~~~~~v~~  499 (540)
                      .           .+-.......          .+.+-.+..++ .+..++.++. +.+...+|+.+.... ...   +..
T Consensus       143 ~-----------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~---~~~  206 (238)
T PF13360_consen  143 K-----------LLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG---IYS  206 (238)
T ss_dssp             E-----------EEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE
T ss_pred             c-----------EEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC---ccC
Confidence            3           3333322221          12222233344 6666777775 556445787664333 222   222


Q ss_pred             EEEeeCCCEEEE-ecCCeEEEEecC-CcEE
Q psy1242         500 VVMSREGVIVVN-YERGHIAAFTMN-GNRL  527 (540)
Q Consensus       500 l~fspdg~~l~s-~~dg~I~lw~~~-g~~l  527 (540)
                      + ...++..|++ ..++.|.+||+. |+.+
T Consensus       207 ~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  207 L-PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             C-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             C-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            1 3456666665 458999999987 5543

...

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.55  E-value=0.034  Score=58.69  Aligned_cols=152  Identities=17%  Similarity=0.050  Sum_probs=91.6

Q ss_pred             EEEEEecCCCEEEEEEecC---CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-
Q psy1242         340 NCFVTTVDSRFLLACGFWD---NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-  415 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~D---gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-  415 (540)
                      ..-+|+|+++.+....-..   ..+.++++++++....+.             +.++   -..-+|+|    ||++|+- 
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-------------~~g~---~~~P~fsp----DG~~l~f~  255 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-------------FNGN---NGAPAFSP----DGSKLAFS  255 (425)
T ss_pred             eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-------------cCCc---cCCccCCC----CCCEEEEE
Confidence            3345788888754443333   348888998877655441             1233   34568999    8877755 


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE--eCCCcEEEEecCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVH--TTFGDLLRSLDPPS  492 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw--~~~g~~~~~l~~~~  492 (540)
                      ...||...||-++.....          ...+..-.+.-+.-.|+|||+.++-.| +.|.-.||  +..|..+..+....
T Consensus       256 ~~rdg~~~iy~~dl~~~~----------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~  325 (425)
T COG0823         256 SSRDGSPDIYLMDLDGKN----------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG  325 (425)
T ss_pred             ECCCCCccEEEEcCCCCc----------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence            557888777766543211          222333333333668999999877655 45555665  55665555444333


Q ss_pred             CCCCceEEEEeeCCCEEEEec--CCe--EEEEecC
Q psy1242         493 GFASPESVVMSREGVIVVNYE--RGH--IAAFTMN  523 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~--dg~--I~lw~~~  523 (540)
                      +.  -..-.|+|||++++.-+  +|.  |.+.++.
T Consensus       326 ~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         326 GG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             CC--CcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence            31  13678899999998733  455  6666654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.53  E-value=0.1  Score=50.90  Aligned_cols=169  Identities=11%  Similarity=0.082  Sum_probs=96.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+++.|+...|+|+....+.|...+.+ |+.+..+.             +.+ .+..-.|++..    ++.++++.-+
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-------------l~g-~~D~EgI~y~g----~~~~vl~~Er   84 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-------------LDG-FGDYEGITYLG----NGRYVLSEER   84 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--------------SS--SSEEEEEE-S----TTEEEEEETT
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-------------CCC-CCCceeEEEEC----CCEEEEEEcC
Confidence            57788999988888888888888888874 88887772             133 24456777765    7777777767


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe-----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC----CcEEEEe-
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL-----TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF----GDLLRSL-  488 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-----~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~----g~~~~~l-  488 (540)
                      ++.+.+.++...+...     .......+     ..+...+-.++|++.++.++.+.......|+...    +..+... 
T Consensus        85 ~~~L~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSL-----DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             TTEEEEEEE----TT-------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             CCcEEEEEEecccccc-----chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            9999999885422110     00111111     1245568999999988877777776666665321    1111111 


Q ss_pred             -cCCC----CCCCceEEEEeeCC-CEEEEe-cCCeEEEEecCCcEEEeee
Q psy1242         489 -DPPS----GFASPESVVMSREG-VIVVNY-ERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       489 -~~~~----~~~~v~~l~fspdg-~~l~s~-~dg~I~lw~~~g~~l~~~~  531 (540)
                       ....    .-..+.+++++|.. ++++.+ ....|..+|.+|+.+..+.
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~  209 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLS  209 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEE
Confidence             1000    01146899999875 444444 4688999999999888776

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.52  E-value=0.26  Score=52.06  Aligned_cols=48  Identities=17%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcC
Q psy1242         360 SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN  428 (540)
Q Consensus       360 sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~  428 (540)
                      .|+||+.. |+.+..+               .--.+.+.++.|+.     ...|+.-..||+++++|+.
T Consensus        62 ~I~iys~s-G~ll~~i---------------~w~~~~iv~~~wt~-----~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSI---------------PWDSGRIVGMGWTD-----DEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEE---------------EECCCCEEEEEECC-----CCeEEEEEcCCEEEEEeCC
Confidence            58899876 7777666               22227899999986     4566677899999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4649|consensus

Probab=96.50  E-value=0.72  Score=44.44  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=46.1

Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEE-EEeccCccCCCcEEEEEeCCCcEEEE
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC-LSRSECNITADCFIASGSADCTVLLW  425 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~-l~~sp~~~~dg~~l~sgs~DgtV~lW  425 (540)
                      -|.+ ++.|...|.+.+.+..+|.....+               .. .+.|.+ ....+    ++..|..|+.|++....
T Consensus        62 vgdf-VV~GCy~g~lYfl~~~tGs~~w~f---------------~~-~~~vk~~a~~d~----~~glIycgshd~~~yal  120 (354)
T KOG4649|consen   62 VGDF-VVLGCYSGGLYFLCVKTGSQIWNF---------------VI-LETVKVRAQCDF----DGGLIYCGSHDGNFYAL  120 (354)
T ss_pred             ECCE-EEEEEccCcEEEEEecchhheeee---------------ee-hhhhccceEEcC----CCceEEEecCCCcEEEe
Confidence            3554 788999999999999999777666               11 122322 22345    78899999999999999


Q ss_pred             EcCC
Q psy1242         426 HWNA  429 (540)
Q Consensus       426 d~~~  429 (540)
                      |..+
T Consensus       121 D~~~  124 (354)
T KOG4649|consen  121 DPKT  124 (354)
T ss_pred             cccc
Confidence            9776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.50  E-value=0.14  Score=50.97  Aligned_cols=145  Identities=10%  Similarity=0.097  Sum_probs=100.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCc-EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNS-FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgs-v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...++.+|.....++.+-.-|+ ..+||.++|+..+.+....       -+.+.||      -.||+    ||++|++.-
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-------gRHFyGH------g~fs~----dG~~LytTE   69 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-------GRHFYGH------GVFSP----DGRLLYTTE   69 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-------CCEEecC------EEEcC----CCCEEEEec
Confidence            4556778866667788877776 5789999999887773221       1233455      47999    999999874


Q ss_pred             C-----CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-------CCcE----------
Q psy1242         418 A-----DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-------LGPV----------  475 (540)
Q Consensus       418 ~-----DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-------Dg~v----------  475 (540)
                      .     .|.|-|||....          .+.+..+..|.-.-..+.+.|||+.|+.+-.       .|..          
T Consensus        70 nd~~~g~G~IgVyd~~~~----------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   70 NDYETGRGVIGVYDAARG----------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             cccCCCcEEEEEEECcCC----------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence            4     578999998721          3456777777766777889999977666531       1222          


Q ss_pred             --EEEeCCCcEEEEecC----CCCCCCceEEEEeeCCCEEEEe
Q psy1242         476 --LVHTTFGDLLRSLDP----PSGFASPESVVMSREGVIVVNY  512 (540)
Q Consensus       476 --~iw~~~g~~~~~l~~----~~~~~~v~~l~fspdg~~l~s~  512 (540)
                        ++...+|+++.....    |.-  ++..+++.++|.+++..
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~l--SiRHLa~~~~G~V~~a~  180 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQL--SIRHLAVDGDGTVAFAM  180 (305)
T ss_pred             eEEEecCCCceeeeeecCcccccc--ceeeEEecCCCcEEEEE
Confidence              333457887766443    333  78999999999887764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.44  E-value=0.021  Score=55.71  Aligned_cols=160  Identities=11%  Similarity=-0.026  Sum_probs=97.2

Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-----CcceEEEEeccCccCCC
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-----YGVVTCLSRSECNITAD  410 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-----~~~Vt~l~~sp~~~~dg  410 (540)
                      .-..+.+.++.|.+.+ .++ .|=.|.+|+++--...-.+            ..++.|     ...|++..|+|.   ..
T Consensus       172 ~yhiNSiS~NsD~et~-lSa-DdLrINLWnl~i~D~sFnI------------VDiKP~nmeeLteVItSaeFhp~---~c  234 (460)
T COG5170         172 PYHINSISFNSDKETL-LSA-DDLRINLWNLEIIDGSFNI------------VDIKPHNMEELTEVITSAEFHPE---MC  234 (460)
T ss_pred             eeEeeeeeecCchhee-eec-cceeeeeccccccCCceEE------------EeccCccHHHHHHHHhhcccCHh---Hc
Confidence            3346788889998864 454 4788999988633211111            011333     356889999993   45


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccc-----cCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCc
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSI-----VGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--FGD  483 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~-----~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--~g~  483 (540)
                      ..+.-.+..|+|++-|++....-.     ......+-...-+.+-...|..+.|+++|+++++-+. -+|+||+.  ...
T Consensus       235 n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~  313 (460)
T COG5170         235 NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN  313 (460)
T ss_pred             ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence            667777889999999988422100     0000011111222334457888999999999987653 47899976  566


Q ss_pred             EEEEecCCCCC----------CCc---eEEEEeeCCCEEEEec
Q psy1242         484 LLRSLDPPSGF----------ASP---ESVVMSREGVIVVNYE  513 (540)
Q Consensus       484 ~~~~l~~~~~~----------~~v---~~l~fspdg~~l~s~~  513 (540)
                      ++.++..|..-          -.|   -.+.||-|.+.+.+|+
T Consensus       314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs  356 (460)
T COG5170         314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS  356 (460)
T ss_pred             CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence            78887655320          012   2467777766666653

>KOG3617|consensus

Probab=96.18  E-value=0.0082  Score=65.53  Aligned_cols=105  Identities=14%  Similarity=0.105  Sum_probs=76.3

Q ss_pred             EEEecCCCEEEEEEe----cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         342 FVTTVDSRFLLACGF----WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       342 ~~~spdg~~llasgs----~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ..|+|... ++|.++    ..|+|.||- ++|++...+                ...-.+++++|+|    ..-.|+.|-
T Consensus        21 ~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V----------------t~P~hatSLCWHp----e~~vLa~gw   78 (1416)
T KOG3617|consen   21 SSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV----------------TYPVHATSLCWHP----EEFVLAQGW   78 (1416)
T ss_pred             cccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc----------------ccceehhhhccCh----HHHHHhhcc
Confidence            34677776 456665    357788873 456654433                1122367899999    666778888


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      .-|.+.+|..++..           .-.....|..+|..+.||++|..++++..-|.|.+|.
T Consensus        79 e~g~~~v~~~~~~e-----------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   79 EMGVSDVQKTNTTE-----------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             ccceeEEEecCCce-----------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence            88999999876522           2234467999999999999999999999999999983

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.12  E-value=0.084  Score=56.00  Aligned_cols=140  Identities=17%  Similarity=0.201  Sum_probs=78.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+..+|+|++++++|  ||.-.|+.....+...                    .+.-...+|.+    .++ +++-..
T Consensus        35 p~~ls~npngr~v~V~g--~geY~iyt~~~~r~k~--------------------~G~g~~~vw~~----~n~-yAv~~~   87 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCG--DGEYEIYTALAWRNKA--------------------FGSGLSFVWSS----RNR-YAVLES   87 (443)
T ss_dssp             -SEEEE-TTSSEEEEEE--TTEEEEEETTTTEEEE--------------------EEE-SEEEE-T----SSE-EEEE-T
T ss_pred             CeeEEECCCCCEEEEEc--CCEEEEEEccCCcccc--------------------cCceeEEEEec----Ccc-EEEEEC
Confidence            35667799999865544  8888888854433321                    13345678887    555 666666


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      ..+|.|+.--..           .....+.- ...+..+--   |.+|+..+.+ .|.+|+. +++.++.+...    +|
T Consensus        88 ~~~I~I~kn~~~-----------~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~----~v  147 (443)
T PF04053_consen   88 SSTIKIYKNFKN-----------EVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS----AV  147 (443)
T ss_dssp             TS-EEEEETTEE------------TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-----E-
T ss_pred             CCeEEEEEcCcc-----------ccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC----CC
Confidence            889999632111           11111211 112333322   7777777655 7888865 78999999753    36


Q ss_pred             eEEEEeeCCCEEEEecCCeEEEEecCCc
Q psy1242         498 ESVVMSREGVIVVNYERGHIAAFTMNGN  525 (540)
Q Consensus       498 ~~l~fspdg~~l~s~~dg~I~lw~~~g~  525 (540)
                      ..+.|+++|.+++..++..+.+++.+-.
T Consensus       148 k~V~Ws~~g~~val~t~~~i~il~~~~~  175 (443)
T PF04053_consen  148 KYVIWSDDGELVALVTKDSIYILKYNLE  175 (443)
T ss_dssp             EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred             cEEEEECCCCEEEEEeCCeEEEEEecch
Confidence            8999999999999988888888876644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640|consensus

Probab=96.11  E-value=0.027  Score=59.92  Aligned_cols=91  Identities=16%  Similarity=0.095  Sum_probs=67.9

Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEE-EEEEcCCCCEEEEEeCCC
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVT-SVAISAELGLVVSGSQLG  473 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~v~~spdg~~lasgs~Dg  473 (540)
                      ..+--+.|+|    .-..||++..+|.|.+..++-            +.+-++.-|...++ +++|.|||+.+|.|=.||
T Consensus        21 ~~i~~~ewnP----~~dLiA~~t~~gelli~R~n~------------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG   84 (665)
T KOG4640|consen   21 INIKRIEWNP----KMDLIATRTEKGELLIHRLNW------------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDG   84 (665)
T ss_pred             cceEEEEEcC----ccchhheeccCCcEEEEEecc------------ceeEeccCCCCccceeeeecCCCCEEEEEecCC
Confidence            3466789999    888999999999998887662            33455665666666 999999999999999999


Q ss_pred             cEEEEeC-CCcEEEEec-CCCCCCCceEEEEe
Q psy1242         474 PVLVHTT-FGDLLRSLD-PPSGFASPESVVMS  503 (540)
Q Consensus       474 ~v~iw~~-~g~~~~~l~-~~~~~~~v~~l~fs  503 (540)
                      +|+++|. +|..+.... ....  .|.++-|+
T Consensus        85 ~I~L~Dve~~~~l~~~~~s~e~--~is~~~w~  114 (665)
T KOG4640|consen   85 TIRLHDVEKGGRLVSFLFSVET--DISKGIWD  114 (665)
T ss_pred             eEEEEEccCCCceecccccccc--chheeecc
Confidence            9999876 666665521 1222  46666664

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.07  E-value=0.85  Score=46.31  Aligned_cols=134  Identities=10%  Similarity=0.093  Sum_probs=76.7

Q ss_pred             CcEEEEEccCC----eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccc
Q psy1242         359 NSFRVFSTDNA----RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSI  434 (540)
Q Consensus       359 gsv~iwd~~~g----~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~  434 (540)
                      |.|.++++...    ..+..+            .. ....++|++|+--     .|. |+.+. .+.|.+|++.... . 
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i------------~~-~~~~g~V~ai~~~-----~~~-lv~~~-g~~l~v~~l~~~~-~-  119 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLI------------HS-TEVKGPVTAICSF-----NGR-LVVAV-GNKLYVYDLDNSK-T-  119 (321)
T ss_dssp             EEEEEEEECSS-----EEEEE------------EE-EEESS-EEEEEEE-----TTE-EEEEE-TTEEEEEEEETTS-S-
T ss_pred             cEEEEEEEEcccccceEEEEE------------EE-EeecCcceEhhhh-----CCE-EEEee-cCEEEEEEccCcc-c-
Confidence            88999999874    122222            01 3457889998865     354 44443 5899999987633 0 


Q ss_pred             cCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE--EeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEe
Q psy1242         435 VGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV--HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY  512 (540)
Q Consensus       435 ~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i--w~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~  512 (540)
                            ......+. ....++++...  +.+++.|.....+.+  |+..+..+..+........+.++.|-+++..++++
T Consensus       120 ------l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  120 ------LLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             ------EEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred             ------chhhheec-ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence                  11222222 22366666655  558888887777765  56655533333222222257888888676655555


Q ss_pred             -cCCeEEEEecC
Q psy1242         513 -ERGHIAAFTMN  523 (540)
Q Consensus       513 -~dg~I~lw~~~  523 (540)
                       .+|.+.++..+
T Consensus       191 D~~gnl~~l~~~  202 (321)
T PF03178_consen  191 DKDGNLFVLRYN  202 (321)
T ss_dssp             ETTSEEEEEEE-
T ss_pred             cCCCeEEEEEEC
Confidence             46889888654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621|consensus

Probab=96.03  E-value=0.047  Score=58.86  Aligned_cols=104  Identities=17%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC----CCcE
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT----FGDL  484 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~----~g~~  484 (540)
                      .+++++.|+.-|.+.++.-..+..          .+....+..+.+..+++|++..++|.|+..|.|.|+..    .+..
T Consensus        44 t~~~l~~GsS~G~lyl~~R~~~~~----------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   44 TEEYLAMGSSAGSVYLYNRHTGEM----------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             CCceEEEecccceEEEEecCchhh----------hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            678999999999999998654221          12222334555667788998889999999999988733    1222


Q ss_pred             EEEecC---CCCCCCceEEEEeeCCCEEEEec-CCeEEEEecCC
Q psy1242         485 LRSLDP---PSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNG  524 (540)
Q Consensus       485 ~~~l~~---~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~g  524 (540)
                      +..-..   |+.  .|++++|+++|..+.+|+ .|+|.+-.++.
T Consensus       114 ~~~t~~d~~~~~--rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKC--RVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCc--eEEEEEecccccEEeecCCCceEEEEEech
Confidence            222222   333  799999999999999986 48888777664

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.02  E-value=0.37  Score=52.55  Aligned_cols=160  Identities=9%  Similarity=0.037  Sum_probs=95.8

Q ss_pred             EecCCCEEEEEEecCCcEEEEEccC-----CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         344 TTVDSRFLLACGFWDNSFRVFSTDN-----ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       344 ~spdg~~llasgs~Dgsv~iwd~~~-----g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      +.++|++.++   .++.|.+.|..+     .+.+..+                .-......++++|    ||++++.++ 
T Consensus       284 ~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yI----------------PVGKsPHGV~vSP----DGkylyVank  340 (635)
T PRK02888        284 AVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYV----------------PVPKNPHGVNTSP----DGKYFIANGK  340 (635)
T ss_pred             hhhCCCEEEE---CCCEEEEEECCccccCCcceEEEE----------------ECCCCccceEECC----CCCEEEEeCC
Confidence            3467886544   267899999887     3444444                1234566899999    999886655 


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCC-cceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-------C----cEE
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTP-TPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-------G----DLL  485 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~-~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-------g----~~~  485 (540)
                      .+.+|.|.|+........++-+.. ..+....- ...-...+|.++|....|.--|..|..|+..       |    ..+
T Consensus       341 lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~  419 (635)
T PRK02888        341 LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIV  419 (635)
T ss_pred             CCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcce
Confidence            599999999876332111100000 01111111 1222356788898888888888888888642       2    344


Q ss_pred             EEecCCCCCCCceEEEE------eeCCCEEEEec----CCe----------EEEEecCCcEEEee
Q psy1242         486 RSLDPPSGFASPESVVM------SREGVIVVNYE----RGH----------IAAFTMNGNRLRHE  530 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~f------spdg~~l~s~~----dg~----------I~lw~~~g~~l~~~  530 (540)
                      ..+..|-.   +-.+.-      .|+|++|++..    |+.          -.|.|+.|..+..+
T Consensus       420 ~k~dV~y~---pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv  481 (635)
T PRK02888        420 QKLDVHYQ---PGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLV  481 (635)
T ss_pred             ecccCCCc---cceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEE
Confidence            44444322   223333      68999999842    332          26888888766544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.01  E-value=0.17  Score=48.47  Aligned_cols=143  Identities=14%  Similarity=0.071  Sum_probs=81.9

Q ss_pred             CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCC
Q psy1242         358 DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGE  437 (540)
Q Consensus       358 Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~  437 (540)
                      +|+|..+|.++|+.+.....             ..-.....+... +    ++..+++++.++.+..||..++.      
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~-------------~~~~~~~~~~~~-~----~~~~v~~~~~~~~l~~~d~~tG~------   57 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDL-------------GPGIGGPVATAV-P----DGGRVYVASGDGNLYALDAKTGK------   57 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-------------SSSCSSEEETEE-E----ETTEEEEEETTSEEEEEETTTSE------
T ss_pred             CCEEEEEECCCCCEEEEEEC-------------CCCCCCccceEE-E----eCCEEEEEcCCCEEEEEECCCCC------
Confidence            68899999999998877621             110112222122 2    45677778899999999986633      


Q ss_pred             CCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEEe-cCCCCCCC-ceEEEEeeCCCEEEE-ec
Q psy1242         438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRSL-DPPSGFAS-PESVVMSREGVIVVN-YE  513 (540)
Q Consensus       438 ~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~l-~~~~~~~~-v~~l~fspdg~~l~s-~~  513 (540)
                           .+-.... ...+.... ..++..++.++.++.+..++ .+|+.+... ........ ........++..++. ..
T Consensus        58 -----~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (238)
T PF13360_consen   58 -----VLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS  130 (238)
T ss_dssp             -----EEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET
T ss_pred             -----EEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec
Confidence                 2222221 11110001 12345666777888887766 699998874 33211101 122233333665555 45


Q ss_pred             CCeEEEEecC-CcEEEeee
Q psy1242         514 RGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       514 dg~I~lw~~~-g~~l~~~~  531 (540)
                      ++.|..+|+. |+.+-...
T Consensus       131 ~g~l~~~d~~tG~~~w~~~  149 (238)
T PF13360_consen  131 SGKLVALDPKTGKLLWKYP  149 (238)
T ss_dssp             CSEEEEEETTTTEEEEEEE
T ss_pred             cCcEEEEecCCCcEEEEee
Confidence            8999999976 88877664

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.99  E-value=0.32  Score=50.61  Aligned_cols=145  Identities=14%  Similarity=0.137  Sum_probs=82.3

Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEc
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHW  427 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~  427 (540)
                      +.. +.+++.++.|..+|..+|+.+...+               -........+.      ++..++.++.++.+..+|.
T Consensus        65 ~~~-v~v~~~~g~v~a~d~~tG~~~W~~~---------------~~~~~~~~p~v------~~~~v~v~~~~g~l~ald~  122 (377)
T TIGR03300        65 GGK-VYAADADGTVVALDAETGKRLWRVD---------------LDERLSGGVGA------DGGLVFVGTEKGEVIALDA  122 (377)
T ss_pred             CCE-EEEECCCCeEEEEEccCCcEeeeec---------------CCCCcccceEE------cCCEEEEEcCCCEEEEEEC
Confidence            443 5677788999999999999876652               11111112222      4567888889999999997


Q ss_pred             CCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCC---ceEEEEe
Q psy1242         428 NARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFAS---PESVVMS  503 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~---v~~l~fs  503 (540)
                      .++.           .+-.... ...+.+.... .+..++.++.+|.+..++. +|+.+...........   ..+... 
T Consensus       123 ~tG~-----------~~W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-  188 (377)
T TIGR03300       123 EDGK-----------ELWRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-  188 (377)
T ss_pred             CCCc-----------Eeeeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-
Confidence            6533           1111111 1112111111 2456677788999888765 8888777654332000   011122 


Q ss_pred             eCCCEEEEecCCeEEEEecC-CcEEE
Q psy1242         504 REGVIVVNYERGHIAAFTMN-GNRLR  528 (540)
Q Consensus       504 pdg~~l~s~~dg~I~lw~~~-g~~l~  528 (540)
                      .++.+++...++.+..+|+. |+.+-
T Consensus       189 ~~~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       189 ADGGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             ECCEEEEECCCCEEEEEEccCCCEee
Confidence            23444444456888888874 66553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.99  E-value=0.49  Score=39.75  Aligned_cols=102  Identities=20%  Similarity=0.216  Sum_probs=62.6

Q ss_pred             eEEEEeccCccCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy1242         397 VTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPV  475 (540)
Q Consensus       397 Vt~l~~sp~~~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v  475 (540)
                      |+++++..-. +|| +.|+.||.|..||+|+-.             ..+..+.. .+.|++++-... ..++.+-.+|+|
T Consensus         2 V~al~~~d~d-~dg~~eLlvGs~D~~IRvf~~~-------------e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTV   65 (111)
T PF14783_consen    2 VTALCLFDFD-GDGENELLVGSDDFEIRVFKGD-------------EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTV   65 (111)
T ss_pred             eeEEEEEecC-CCCcceEEEecCCcEEEEEeCC-------------cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEE
Confidence            6667665420 122 679999999999999843             35555544 445777766655 578999999999


Q ss_pred             EEEeCCCcEEEEecCCCCCCCceEEEEe-eCC----CEEEEecCCeEE
Q psy1242         476 LVHTTFGDLLRSLDPPSGFASPESVVMS-REG----VIVVNYERGHIA  518 (540)
Q Consensus       476 ~iw~~~g~~~~~l~~~~~~~~v~~l~fs-pdg----~~l~s~~dg~I~  518 (540)
                      -+++...++ ...+...   .+.++++. .+|    .+++..++|.|-
T Consensus        66 GvY~~~~Rl-WRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   66 GVYDRSQRL-WRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEeCccee-eeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            998764433 3333222   34555553 333    244445666653

>KOG2314|consensus

Probab=95.98  E-value=0.066  Score=56.21  Aligned_cols=135  Identities=10%  Similarity=0.056  Sum_probs=87.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      -+-+.|||-|.+ |++-.. .-|.+|--.+-..++.+                .|. .|.-+.|||    ..++|+|=|.
T Consensus       213 etyv~wSP~GTY-L~t~Hk-~GI~lWGG~~f~r~~RF----------------~Hp-~Vq~idfSP----~EkYLVT~s~  269 (698)
T KOG2314|consen  213 ETYVRWSPKGTY-LVTFHK-QGIALWGGESFDRIQRF----------------YHP-GVQFIDFSP----NEKYLVTYSP  269 (698)
T ss_pred             eeeEEecCCceE-EEEEec-cceeeecCccHHHHHhc----------------cCC-CceeeecCC----ccceEEEecC
Confidence            467789999997 566654 44778854443344444                454 478899999    7899998653


Q ss_pred             -----------CCcEEEEEcCCCcccccCCCCCCcceEEecc---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc
Q psy1242         419 -----------DCTVLLWHWNARTQSIVGETDTPTPRATLTG---HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD  483 (540)
Q Consensus       419 -----------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~  483 (540)
                                 ...++|||+.++.           ..+.+..   ....-.-..||.|++++|--..+ .|.|+.. .-.
T Consensus       270 ~p~~~~~~d~e~~~l~IWDI~tG~-----------lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~  337 (698)
T KOG2314|consen  270 EPIIVEEDDNEGQQLIIWDIATGL-----------LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFM  337 (698)
T ss_pred             CccccCcccCCCceEEEEEccccc-----------hhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCcee
Confidence                       1578999998843           3333322   22223346899999999877664 5666643 322


Q ss_pred             EE--EEecCCCCCCCceEEEEeeCCCEEEEe
Q psy1242         484 LL--RSLDPPSGFASPESVVMSREGVIVVNY  512 (540)
Q Consensus       484 ~~--~~l~~~~~~~~v~~l~fspdg~~l~s~  512 (540)
                      ++  +.++  -.  .|....|+|.+.+||..
T Consensus       338 lld~Kslk--i~--gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  338 LLDKKSLK--IS--GIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             eecccccC--Cc--cccCcccCCCcceEEEE
Confidence            22  1121  11  46788999999998874

>KOG1920|consensus

Probab=95.93  E-value=0.14  Score=58.69  Aligned_cols=111  Identities=11%  Similarity=0.060  Sum_probs=71.4

Q ss_pred             eEEEEeccCccCCCcEEEEEe----CC-CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-
Q psy1242         397 VTCLSRSECNITADCFIASGS----AD-CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-  470 (540)
Q Consensus       397 Vt~l~~sp~~~~dg~~l~sgs----~D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-  470 (540)
                      =++|+|--    ||+++++..    .+ ..++|||.+. .....     .++      -.+.=.+++|-|.|..+++-- 
T Consensus       198 ~~~IsWRg----Dg~~fAVs~~~~~~~~RkirV~drEg-~Lns~-----se~------~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  198 KTSISWRG----DGEYFAVSFVESETGTRKIRVYDREG-ALNST-----SEP------VEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             CceEEEcc----CCcEEEEEEEeccCCceeEEEecccc-hhhcc-----cCc------ccccccceeecCCCCeEeeeee
Confidence            45689987    999998832    23 7999999652 11000     111      122234789999999988753 


Q ss_pred             --CCCcEEEEeCCCcEEEEe--cCCCCCCCceEEEEeeCCCEEEE---ecC-CeEEEEecC
Q psy1242         471 --QLGPVLVHTTFGDLLRSL--DPPSGFASPESVVMSREGVIVVN---YER-GHIAAFTMN  523 (540)
Q Consensus       471 --~Dg~v~iw~~~g~~~~~l--~~~~~~~~v~~l~fspdg~~l~s---~~d-g~I~lw~~~  523 (540)
                        .|+.|.++-.+|-....+  +.+.+...+..++|+.++.+|+.   ... ..|.+|.+.
T Consensus       262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence              466788887666443322  22222225889999999999987   333 449998764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.92  E-value=0.13  Score=54.35  Aligned_cols=156  Identities=16%  Similarity=0.105  Sum_probs=92.6

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEE--EccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVF--STDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iw--d~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ..-+|+|||++++.+...||...||  |+.++. ...+               ..-.+.-+.=.|+|    ||++|+-.+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~L---------------t~~~gi~~~Ps~sp----dG~~ivf~S  300 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRL---------------TNGFGINTSPSWSP----DGSKIVFTS  300 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceec---------------ccCCccccCccCCC----CCCEEEEEe
Confidence            3447899999999999999986665  665544 3334               22222333567899    998886655


Q ss_pred             -CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcE--EEEeC-CCcEEEEecCCC
Q psy1242         418 -ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPV--LVHTT-FGDLLRSLDPPS  492 (540)
Q Consensus       418 -~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v--~iw~~-~g~~~~~l~~~~  492 (540)
                       ..|.-.||-++...          .-...+......-..-.|+|||+.++..+. +|..  .+.+. ++.-.+.+....
T Consensus       301 dr~G~p~I~~~~~~g----------~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~  370 (425)
T COG0823         301 DRGGRPQIYLYDLEG----------SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY  370 (425)
T ss_pred             CCCCCcceEEECCCC----------CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc
Confidence             56776777655422          122333333332337789999999888774 3443  33443 333255554332


Q ss_pred             CCCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEEE
Q psy1242         493 GFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLR  528 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l~  528 (540)
                         ....-.|.++|+.+...+    +..+..-+.+|+...
T Consensus       371 ---~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~  407 (425)
T COG0823         371 ---LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR  407 (425)
T ss_pred             ---cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence               234567889999887632    233444455566554

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.74  E-value=0.37  Score=52.52  Aligned_cols=71  Identities=11%  Similarity=0.112  Sum_probs=48.6

Q ss_pred             CCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC-CCc------------EEEEecCCCCCCCceEEEEeeCCCEEEE-ecCC
Q psy1242         451 EQPVTSVAISAELGLVVSGS-QLGPVLVHTT-FGD------------LLRSLDPPSGFASPESVVMSREGVIVVN-YERG  515 (540)
Q Consensus       451 ~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~-~g~------------~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg  515 (540)
                      ......++++|||++++.++ .+.+|-|.+. +.+            .+.......   .+...+|.++|....+ .-|.
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl---GPLHTaFDg~G~aytslf~ds  396 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL---GPLHTAFDGRGNAYTTLFLDS  396 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC---CcceEEECCCCCEEEeEeecc
Confidence            34567899999999876655 5888877644 222            234444333   3568899999875555 4688


Q ss_pred             eEEEEecCC
Q psy1242         516 HIAAFTMNG  524 (540)
Q Consensus       516 ~I~lw~~~g  524 (540)
                      +|..|++..
T Consensus       397 qv~kwn~~~  405 (635)
T PRK02888        397 QIVKWNIEA  405 (635)
T ss_pred             eeEEEehHH
Confidence            999999763

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=1.4  Score=46.07  Aligned_cols=151  Identities=15%  Similarity=0.110  Sum_probs=100.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++++++..+++....++.|.+.|..+.+......              .+.  ....++++|    +++.+..+..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--------------vG~--~P~~~~~~~----~~~~vYV~n~  135 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--------------VGL--GPVGLAVDP----DGKYVYVANA  135 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--------------ecc--CCceEEECC----CCCEEEEEec
Confidence            35667889999888888888999999988777776651              222  566789999    8877766554


Q ss_pred             ---CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcEEEE------e
Q psy1242         419 ---DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTTFGDLLRS------L  488 (540)
Q Consensus       419 ---DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~~g~~~~~------l  488 (540)
                         ++++.+.|..+           .+.......-..+ ..++++|+|..+..+. .++++.+.+.++..+..      .
T Consensus       136 ~~~~~~vsvid~~t-----------~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~  203 (381)
T COG3391         136 GNGNNTVSVIDAAT-----------NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV  203 (381)
T ss_pred             ccCCceEEEEeCCC-----------CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc
Confidence               57777777554           2333443333334 7899999999655554 67788776654444432      1


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCC
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNG  524 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g  524 (540)
                      ....   .+..++++|+|..+....    ++.+...+...
T Consensus       204 ~~~~---~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~  240 (381)
T COG3391         204 GVGT---GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT  240 (381)
T ss_pred             ccCC---CCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence            1111   457899999999766532    25777777663

>KOG1645|consensus

Probab=95.33  E-value=0.057  Score=54.61  Aligned_cols=74  Identities=15%  Similarity=0.107  Sum_probs=60.7

Q ss_pred             eccCcceEEEEeccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEE
Q psy1242         391 FGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVS  468 (540)
Q Consensus       391 ~~h~~~Vt~l~~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~las  468 (540)
                      .+|...|..++|||    ..+ ++..++.+.+|+|.|+.+.           ..+..+..| ..+++++|.-+.. +|..
T Consensus       190 p~~g~~IrdlafSp----~~~GLl~~asl~nkiki~dlet~-----------~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSP----FNEGLLGLASLGNKIKIMDLETS-----------CVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             cccchhhhhhccCc----cccceeeeeccCceEEEEecccc-----------eeeeheecc-CCceeeeeccCCcceeEE
Confidence            78888999999999    444 7888999999999999873           355666666 7899999998764 6777


Q ss_pred             EeCCCcEEEEeC
Q psy1242         469 GSQLGPVLVHTT  480 (540)
Q Consensus       469 gs~Dg~v~iw~~  480 (540)
                      |-..|.|.|++.
T Consensus       254 Gl~nG~VlvyD~  265 (463)
T KOG1645|consen  254 GLQNGMVLVYDM  265 (463)
T ss_pred             eccCceEEEEEc
Confidence            888999999875

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.31  E-value=0.14  Score=57.53  Aligned_cols=98  Identities=17%  Similarity=0.315  Sum_probs=69.1

Q ss_pred             EEEecCCcEEEEEccCCe--EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         353 ACGFWDNSFRVFSTDNAR--IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       353 asgs~Dgsv~iwd~~~g~--~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      ..|-.++.+..||.+-..  ++..- .|          . .......+|++-+.    +| +||.||.+|.||++|--. 
T Consensus       546 flGls~n~lfriDpR~~~~k~v~~~-~k----------~-Y~~~~~Fs~~aTt~----~G-~iavgs~~G~IRLyd~~g-  607 (794)
T PF08553_consen  546 FLGLSDNSLFRIDPRLSGNKLVDSQ-SK----------Q-YSSKNNFSCFATTE----DG-YIAVGSNKGDIRLYDRLG-  607 (794)
T ss_pred             EEEECCCceEEeccCCCCCceeecc-cc----------c-cccCCCceEEEecC----Cc-eEEEEeCCCcEEeecccc-
Confidence            466778999999988432  22110 10          0 12345678888776    55 899999999999999322 


Q ss_pred             cccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                                ......+.+-..+|.+|+++.||++|+..|..-.+.+.
T Consensus       608 ----------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  608 ----------KRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             ----------hhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence                      12445667888999999999999998888866555555

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.30  E-value=0.49  Score=50.57  Aligned_cols=123  Identities=10%  Similarity=0.068  Sum_probs=71.6

Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC---CC--EEEEEEcCCCCEE
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE---QP--VTSVAISAELGLV  466 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~---~~--V~~v~~spdg~~l  466 (540)
                      |.-..|..++|.|....+--.|++.-....|.||.+.....      +..+.+..-..+-   -+  -.++.|+|....+
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~------e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL  127 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT------ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAIL  127 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc------ccccceeeeeeeccCCcccCCCcccccCCCceE
Confidence            34456889999994333333566667788999999863221      1122222211111   01  1356799998887


Q ss_pred             EEEeCCCcEEEEe---CCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCe--EEEEecC
Q psy1242         467 VSGSQLGPVLVHT---TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGH--IAAFTMN  523 (540)
Q Consensus       467 asgs~Dg~v~iw~---~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~--I~lw~~~  523 (540)
                      +.-.....-.+.+   .+.+....++.. +  -|.|.||.+||+.|+.+-+..  -++||-.
T Consensus       128 ~VLT~~dvSV~~sV~~d~srVkaDi~~~-G--~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  128 TVLTARDVSVLPSVHCDSSRVKADIKTS-G--LIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEEecCceeEeeeeeeCCceEEEeccCC-c--eEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            7765544433332   233344455433 3  689999999999888754434  4667643

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.30  E-value=0.69  Score=51.07  Aligned_cols=161  Identities=17%  Similarity=0.111  Sum_probs=85.5

Q ss_pred             EEEEEEecCCCEEEEEEe-----cCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         339 HNCFVTTVDSRFLLACGF-----WDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs-----~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      +...+++|||+.+++...     .|+.-.||-.. .+......               .+.  ..+.-.|+|    +|+.
T Consensus       352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---------------~g~--~~t~PsWsp----DG~~  410 (591)
T PRK13616        352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---------------EGH--SLTRPSWSL----DADA  410 (591)
T ss_pred             cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---------------cCC--CCCCceECC----CCCc
Confidence            456778999998655542     24443444332 23332222               332  378889999    8888


Q ss_pred             EEEEeCC-CcEEEEEcCCCccccc-CCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE---E-eCCCcE-E
Q psy1242         413 IASGSAD-CTVLLWHWNARTQSIV-GETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV---H-TTFGDL-L  485 (540)
Q Consensus       413 l~sgs~D-gtV~lWd~~~~~~~~~-~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i---w-~~~g~~-~  485 (540)
                      |.+.+.. ..+++.+-.. ..... -.-..+....   .....|..+.|||||..++... +|.|.+   - ...|.. +
T Consensus       411 lw~v~dg~~~~~v~~~~~-~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l  485 (591)
T PRK13616        411 VWVVVDGNTVVRVIRDPA-TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYAL  485 (591)
T ss_pred             eEEEecCcceEEEeccCC-CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceee
Confidence            8877643 2222222111 00000 0000011111   2345799999999999887766 467765   2 234541 1


Q ss_pred             ---EEecCCCCCCCceEEEEeeCCCEEEEecC--CeEEEEecCCcE
Q psy1242         486 ---RSLDPPSGFASPESVVMSREGVIVVNYER--GHIAAFTMNGNR  526 (540)
Q Consensus       486 ---~~l~~~~~~~~v~~l~fspdg~~l~s~~d--g~I~lw~~~g~~  526 (540)
                         +.+..... ..+.++.|..++.+++...+  ..+...+++|..
T Consensus       486 ~~~~~l~~~l~-~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~  530 (591)
T PRK13616        486 TNPREVGPGLG-DTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN  530 (591)
T ss_pred             cccEEeecccC-CccccceEecCCEEEEEecCCCCceEEEecCCcc
Confidence               11221111 13578999999997765433  445555666654

>KOG2395|consensus

Probab=95.16  E-value=0.36  Score=50.78  Aligned_cols=98  Identities=15%  Similarity=0.305  Sum_probs=65.7

Q ss_pred             EEecCCcEEEEEccC-Ce-EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242         354 CGFWDNSFRVFSTDN-AR-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNART  431 (540)
Q Consensus       354 sgs~Dgsv~iwd~~~-g~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~  431 (540)
                      .|-.|++|.-||.+- ++ .+...++|.           ..-...-.|.+-..    +| +|+.||.+|.||++|--.  
T Consensus       399 vGLs~n~vfriDpRv~~~~kl~~~q~kq-----------y~~k~nFsc~aTT~----sG-~IvvgS~~GdIRLYdri~--  460 (644)
T KOG2395|consen  399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQ-----------YSTKNNFSCFATTE----SG-YIVVGSLKGDIRLYDRIG--  460 (644)
T ss_pred             EeecCCceEEecccccCcceeeeeeccc-----------cccccccceeeecC----Cc-eEEEeecCCcEEeehhhh--
Confidence            455689999999872 22 222221111           01123456776654    45 899999999999999522  


Q ss_pred             ccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         432 QSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       432 ~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                               ......+.+-..+|..|..+.+|++|+..|..-.+.+.
T Consensus       461 ---------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~  498 (644)
T KOG2395|consen  461 ---------RRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID  498 (644)
T ss_pred             ---------hhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence                     13446678889999999999999998877755545554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.15  E-value=2.9  Score=44.05  Aligned_cols=104  Identities=14%  Similarity=0.032  Sum_probs=63.3

Q ss_pred             EEEEEEEecCCCEEEEEEecCCc----EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNS----FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgs----v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ....+++||||++++.+-+..|+    +++.|+.+|+.+....              ..  ..-..++|.+    +++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--------------~~--~~~~~~~W~~----d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--------------EN--PKFSSVSWSD----DGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--------------EE--EESEEEEECT----TSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--------------cc--cccceEEEeC----CCCEE
Confidence            34567789999987666566565    9999999998765320              11  1123499999    87777


Q ss_pred             EEEeCCC-----------cEEEEEcCCCcccccCCCCCCcceEEeccCCC--CEEEEEEcCCCCEEEEEe
Q psy1242         414 ASGSADC-----------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQ--PVTSVAISAELGLVVSGS  470 (540)
Q Consensus       414 ~sgs~Dg-----------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasgs  470 (540)
                      +-...+.           .|..|.+.+...         +....+.+...  ....+..++|+++++..+
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~---------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~  245 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQS---------EDELVFEEPDEPFWFVSVSRSKDGRYLFISS  245 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GG---------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChH---------hCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence            6655433           266676654321         11233333332  266888999999876544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3617|consensus

Probab=95.08  E-value=0.061  Score=59.07  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=60.5

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      +++.+++|+|..- +++.|-.-|.+.+|..++.+.-...               ..|..+|..+.||+    +|..++|+
T Consensus        60 ~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~htv~---------------~th~a~i~~l~wS~----~G~~l~t~  119 (1416)
T KOG3617|consen   60 VHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETHTVV---------------ETHPAPIQGLDWSH----DGTVLMTL  119 (1416)
T ss_pred             eehhhhccChHHH-HHhhccccceeEEEecCCceeeeec---------------cCCCCCceeEEecC----CCCeEEEc
Confidence            3345566788765 6899988899999998876655444               57999999999999    99999999


Q ss_pred             eCCCcEEEEEcCC
Q psy1242         417 SADCTVLLWHWNA  429 (540)
Q Consensus       417 s~DgtV~lWd~~~  429 (540)
                      ..-|.|.+|....
T Consensus       120 d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  120 DNPGSVHLWRYDV  132 (1416)
T ss_pred             CCCceeEEEEeee
Confidence            9999999999764

>KOG1008|consensus

Probab=95.06  E-value=0.0085  Score=63.69  Aligned_cols=157  Identities=10%  Similarity=0.066  Sum_probs=97.4

Q ss_pred             EEEEEEEecCCCEEEEEEe----cCCcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         338 RHNCFVTTVDSRFLLACGF----WDNSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs----~Dgsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      .++|.+|++-....||+|-    .|..+.|||+.++-.  .....-          .  .+-.+.+.+++|-.    +.+
T Consensus       104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f----------s--~~~l~gqns~cwlr----d~k  167 (783)
T KOG1008|consen  104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF----------S--SSTLDGQNSVCWLR----DTK  167 (783)
T ss_pred             cccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc----------c--cccccCcccccccc----Ccc
Confidence            3889999886444567764    356799999987622  111100          0  11334455788876    888


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC--C-CcEEEE
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT--F-GDLLRS  487 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~--~-g~~~~~  487 (540)
                      ++++|.....+.++|++...            .....-.+..|..+.+.| .+.++++-. ||.|-+|+.  + ..+++.
T Consensus       168 lvlaGm~sr~~~ifdlRqs~------------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~  234 (783)
T KOG1008|consen  168 LVLAGMTSRSVHIFDLRQSL------------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI  234 (783)
T ss_pred             hhhcccccchhhhhhhhhhh------------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH
Confidence            99999999999999987422            111111233566678888 777887776 999999983  1 223333


Q ss_pred             ecCCCC--CCCceEEEEeeCCC--EEEE-ecCCeEEEEecC
Q psy1242         488 LDPPSG--FASPESVVMSREGV--IVVN-YERGHIAAFTMN  523 (540)
Q Consensus       488 l~~~~~--~~~v~~l~fspdg~--~l~s-~~dg~I~lw~~~  523 (540)
                      +...+.  .-.+..++|.|...  ..+. -+.++|++|++.
T Consensus       235 i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  235 ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            322222  01367899988643  3333 345889999864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=3.8  Score=42.82  Aligned_cols=158  Identities=13%  Similarity=0.100  Sum_probs=99.8

Q ss_pred             EEEEEEecCCCEEEEEEe--cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGF--WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs--~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ...++++++++++.++..  .++++.+.|..+++.+...               ..-..+ ..++++|    +|..+...
T Consensus       118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~---------------~vG~~P-~~~a~~p----~g~~vyv~  177 (381)
T COG3391         118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI---------------PVGNTP-TGVAVDP----DGNKVYVT  177 (381)
T ss_pred             CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE---------------ecCCCc-ceEEECC----CCCeEEEE
Confidence            356788999998877776  4789999999988888776               222233 8899999    88866555


Q ss_pred             e-CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEE-EeCCCcEEEEecCC
Q psy1242         417 S-ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL---GPVLV-HTTFGDLLRSLDPP  491 (540)
Q Consensus       417 s-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D---g~v~i-w~~~g~~~~~l~~~  491 (540)
                      . .+++|.+.|.+......      ....... .-...-..+.++++|..+......   +.+.. ...++.........
T Consensus       178 ~~~~~~v~vi~~~~~~v~~------~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~  250 (381)
T COG3391         178 NSDDNTVSVIDTSGNSVVR------GSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV  250 (381)
T ss_pred             ecCCCeEEEEeCCCcceec------ccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc
Confidence            4 78999999965522110      0000011 112223468899999865554433   46654 44466555542222


Q ss_pred             CCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242         492 SGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG  524 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g  524 (540)
                      ... ....+.++|+|..+...  ..+.+.+-|...
T Consensus       251 ~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         251 GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            221 35678999999988774  346777777553

>KOG1912|consensus

Probab=94.89  E-value=1.9  Score=47.55  Aligned_cols=159  Identities=13%  Similarity=0.050  Sum_probs=94.4

Q ss_pred             EEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         340 NCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       340 ~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      .|+.+.. +.+.++++-....++.+|+..+|+.....               ........|+.+.|-   |.+.+..-+.
T Consensus       115 l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~---------------~ys~~iLs~f~~DPf---d~rh~~~l~s  176 (1062)
T KOG1912|consen  115 LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY---------------DYSHEILSCFRVDPF---DSRHFCVLGS  176 (1062)
T ss_pred             eeeeeccCcchheeEEecCCcEEEEEEccCCceeecc---------------ccCCcceeeeeeCCC---CcceEEEEcc
Confidence            4555544 44456677777889999999999988766               444456788999995   6777766666


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCC-------------------------CEEEEEEcCCCCEEEEEeCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ-------------------------PVTSVAISAELGLVVSGSQLG  473 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~-------------------------~V~~v~~spdg~~lasgs~Dg  473 (540)
                      .|.|-+-+.-..+..    ...++..+.-..|.+                         ..-..+|+|.-+-++-..-..
T Consensus       177 ~g~vl~~~~l~~sep----~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr  252 (1062)
T KOG1912|consen  177 KGFVLSCKDLGLSEP----DVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR  252 (1062)
T ss_pred             CceEEEEeccCCCCC----CCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence            777776664321100    011222222222221                         011245677665444444555


Q ss_pred             cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCC--EEEE-ecCCeEEEEec
Q psy1242         474 PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGV--IVVN-YERGHIAAFTM  522 (540)
Q Consensus       474 ~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~--~l~s-~~dg~I~lw~~  522 (540)
                      .+.|.+. =..++.......++  +.-+.+-|+++  .|.+ -.+|.+.+|-.
T Consensus       253 ellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  253 ELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             ceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEe
Confidence            6666554 33455555555552  35577777765  4555 46899999854

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.85  E-value=3.1  Score=42.02  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             ceEEeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEE--e-CCC----cE-EEEecCCCCCCCceEEEEeeCCCEEEEec
Q psy1242         443 PRATLTGHEQPVTSVAISAELGLVVSGSQL-GPVLVH--T-TFG----DL-LRSLDPPSGFASPESVVMSREGVIVVNYE  513 (540)
Q Consensus       443 ~~~~l~~h~~~V~~v~~spdg~~lasgs~D-g~v~iw--~-~~g----~~-~~~l~~~~~~~~v~~l~fspdg~~l~s~~  513 (540)
                      .+..+.+|-..-+.|+||||++.+..+... +.|.-+  + .++    +. ...+....+  .+-.++...+|.+-+++.
T Consensus       154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G--~PDG~~vDadG~lw~~a~  231 (307)
T COG3386         154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPG--LPDGMAVDADGNLWVAAV  231 (307)
T ss_pred             EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCC--CCCceEEeCCCCEEEecc
Confidence            344455555556789999999877666544 555333  3 122    21 122222233  567888889999875543


Q ss_pred             -C-CeEEEEecCCcEEEeeecC-Ccceec
Q psy1242         514 -R-GHIAAFTMNGNRLRHESHN-DNLQKT  539 (540)
Q Consensus       514 -d-g~I~lw~~~g~~l~~~~~~-~~V~~v  539 (540)
                       + +.|..|+++|+++...... ..++|+
T Consensus       232 ~~g~~v~~~~pdG~l~~~i~lP~~~~t~~  260 (307)
T COG3386         232 WGGGRVVRFNPDGKLLGEIKLPVKRPTNP  260 (307)
T ss_pred             cCCceEEEECCCCcEEEEEECCCCCCccc
Confidence             3 3999999999999998744 555554

>KOG2079|consensus

Probab=94.81  E-value=0.11  Score=58.61  Aligned_cols=96  Identities=17%  Similarity=0.238  Sum_probs=67.4

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      .++.|+..|.+...|+... .-. +  |.+          ..-+++|+|++|+.    +|..++.|-.+|.|.+||+.. 
T Consensus       101 ~ivi~Ts~ghvl~~d~~~n-L~~-~--~~n----------e~v~~~Vtsvafn~----dg~~l~~G~~~G~V~v~D~~~-  161 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGN-LGP-L--HQN----------ERVQGPVTSVAFNQ----DGSLLLAGLGDGHVTVWDMHR-  161 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcc-cch-h--hcC----------CccCCcceeeEecC----CCceeccccCCCcEEEEEccC-
Confidence            3678888888888887632 111 1  111          23468999999998    999999999999999999876 


Q ss_pred             cccccCCCCCCcceEEeccCCCCEEEE---EEcCCCCEEEEEeCCCcE
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQPVTSV---AISAELGLVVSGSQLGPV  475 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v---~~spdg~~lasgs~Dg~v  475 (540)
                                .++++.+..|..+++++   .+..++..+.++...|.+
T Consensus       162 ----------~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf  199 (1206)
T KOG2079|consen  162 ----------AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSF  199 (1206)
T ss_pred             ----------CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCce
Confidence                      34666776666555444   344455667777777753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=94.52  E-value=4.9  Score=39.32  Aligned_cols=40  Identities=15%  Similarity=0.121  Sum_probs=32.7

Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec
Q psy1242         450 HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD  489 (540)
Q Consensus       450 h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~  489 (540)
                      -.+.|..+.+||||..||+...+|.|.+|.. .-++.+...
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            3568999999999999999999999999965 545554444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.52  E-value=3.6  Score=40.32  Aligned_cols=158  Identities=16%  Similarity=0.086  Sum_probs=87.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ....++++|++.+.+....++.-.+|-...+.....+              +.+  ..++.-+|++    ++...+....
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--------------~~g--~~l~~PS~d~----~g~~W~v~~~   85 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--------------LTG--GSLTRPSWDP----DGWVWTVDDG   85 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--------------ccC--CccccccccC----CCCEEEEEcC
Confidence            4566789999965444423444444443333333332              022  3677889999    8766666666


Q ss_pred             CCcEEEEE-cCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEe---CCCcEEEE----eCCC-c-----
Q psy1242         419 DCTVLLWH-WNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGS---QLGPVLVH----TTFG-D-----  483 (540)
Q Consensus       419 DgtV~lWd-~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs---~Dg~v~iw----~~~g-~-----  483 (540)
                      +...+++. .....         ...+..-.. -...|+.+.+||||..+|...   .++.|.+-    +..| .     
T Consensus        86 ~~~~~~~~~~~~g~---------~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~  156 (253)
T PF10647_consen   86 SGGVRVVRDSASGT---------GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG  156 (253)
T ss_pred             CCceEEEEecCCCc---------ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence            66667774 11111         111111111 112899999999999877655   34566553    2344 1     


Q ss_pred             EEEEecCCCCCCCceEEEEeeCCCEEEEec--CCeEE-EEecCCcEE
Q psy1242         484 LLRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIA-AFTMNGNRL  527 (540)
Q Consensus       484 ~~~~l~~~~~~~~v~~l~fspdg~~l~s~~--dg~I~-lw~~~g~~l  527 (540)
                      .+........  .+..++|.+++.+++.+.  ++.+. ...++|...
T Consensus       157 ~~~~~~~~~~--~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~  201 (253)
T PF10647_consen  157 PRRVAPPLLS--DVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPS  201 (253)
T ss_pred             ceEecccccC--cceeeeecCCCEEEEEeCCCCCceeEEEEccCCcc
Confidence            1111112122  678999999999888743  33333 356665433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.43  E-value=0.12  Score=36.27  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE
Q psy1242         451 EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL  484 (540)
Q Consensus       451 ~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~  484 (540)
                      ...|.+++|+|..++||.|+.+|.|.++-.+++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            3468999999999999999999999998666654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.28  E-value=4.1  Score=42.71  Aligned_cols=177  Identities=13%  Similarity=0.091  Sum_probs=89.2

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC-CC---cEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT-AD---CFI  413 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~-dg---~~l  413 (540)
                      .+.+++.|.-|  ++|.|+.+|++.|.|++....+..-.-...       ..-......|+++.|+-+..+ |+   -.+
T Consensus        88 ~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~-------~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   88 PVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES-------FLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG---------T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             cEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc-------ccccccccCeeEEEEEEEecCCCcccceEE
Confidence            36777777555  479999999999999987776655311000       000123456888888753222 22   468


Q ss_pred             EEEeCCCcEEEEEcCC-CcccccCCCCCCcceEEeccCCCCEEEEE-EcCCC--------------------CEEEEEeC
Q psy1242         414 ASGSADCTVLLWHWNA-RTQSIVGETDTPTPRATLTGHEQPVTSVA-ISAEL--------------------GLVVSGSQ  471 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~-~~~~~~~~~~~~~~~~~l~~h~~~V~~v~-~spdg--------------------~~lasgs~  471 (540)
                      +.|...|.+.+|.+.. ..+...     -+.......+.+.|..+. ++.+.                    ..++..+.
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~-----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFS-----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EE-----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             EEEeCCCCEEEEEEecCCCCceE-----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence            8899999999998753 111110     112222234556655554 32221                    12344444


Q ss_pred             CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEe-----eCCCEEEE-ecCCeEEEEecCC-cEEEee
Q psy1242         472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMS-----REGVIVVN-YERGHIAAFTMNG-NRLRHE  530 (540)
Q Consensus       472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fs-----pdg~~l~s-~~dg~I~lw~~~g-~~l~~~  530 (540)
                      +..+++... +.+......  ........+++-     ..+..|++ -.+|.|++|++-+ +.+...
T Consensus       234 e~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~  298 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV  298 (395)
T ss_dssp             SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred             ccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence            667888744 555443333  211123345553     34556665 6789999999753 444444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.98  E-value=2.1  Score=44.84  Aligned_cols=133  Identities=15%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242         352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNART  431 (540)
Q Consensus       352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~  431 (540)
                      +..++.+|.+...|..+|+.+....                 .+....+..      .+..|+.++.++.+...|..++.
T Consensus       259 vy~~~~~g~l~ald~~tG~~~W~~~-----------------~~~~~~~~~------~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        259 VYALAYNGNLVALDLRSGQIVWKRE-----------------YGSVNDFAV------DGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             EEEEEcCCeEEEEECCCCCEEEeec-----------------CCCccCcEE------ECCEEEEEcCCCeEEEEECCCCc
Confidence            3455678999999999998765441                 111111222      35577778889999999876532


Q ss_pred             ccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEEecCCCCCCCce-EEEEeeCCCEE
Q psy1242         432 QSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRSLDPPSGFASPE-SVVMSREGVIV  509 (540)
Q Consensus       432 ~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~l~~~~~~~~v~-~l~fspdg~~l  509 (540)
                      .....        ..+ .+ ....+..+  .+..++.++.||.+.+.+ .+|+.+...+....  .+. ...+ .+++++
T Consensus       316 ~~W~~--------~~~-~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~-~~~~l~  380 (394)
T PRK11138        316 ELWSQ--------SDL-LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS--GFLSEPVV-ADDKLL  380 (394)
T ss_pred             EEEcc--------ccc-CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC--cceeCCEE-ECCEEE
Confidence            11100        000 01 11111222  245778889999987654 48998877765433  122 2222 356666


Q ss_pred             EEecCCeEEEEec
Q psy1242         510 VNYERGHIAAFTM  522 (540)
Q Consensus       510 ~s~~dg~I~lw~~  522 (540)
                      +...+|.|+.+++
T Consensus       381 v~t~~G~l~~~~~  393 (394)
T PRK11138        381 IQARDGTVYAITR  393 (394)
T ss_pred             EEeCCceEEEEeC
Confidence            6677888887753

>KOG3630|consensus

Probab=93.95  E-value=0.35  Score=55.14  Aligned_cols=151  Identities=11%  Similarity=-0.051  Sum_probs=96.3

Q ss_pred             EEEEEEecCCCEEEEEEe-cCCcEEEEEccCCeEEE-----EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         339 HNCFVTTVDSRFLLACGF-WDNSFRVFSTDNARIVQ-----IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs-~Dgsv~iwd~~~g~~~~-----~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      +..++..+|++...+.-+ .+-.|..+|+++-..-.     -+..|.         +.......+.|+.|.|.   --..
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~---------ts~ek~vf~~~~~wnP~---vp~n  170 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSA---------TSFEKPVFQLKNVWNPL---VPLN  170 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccccccc---------chhccccccccccccCC---ccch
Confidence            455566788875333322 23367888887432111     111010         11223345678889883   2344


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCC
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPS  492 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~  492 (540)
                      .+.+..|+.|++..+....          ..... ..-...++|++|+|.|..++.|-..|++.-+...++..+.+.++.
T Consensus       171 ~av~l~dlsl~V~~~~~~~----------~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp  239 (1405)
T KOG3630|consen  171 SAVDLSDLSLRVKSTKQLA----------QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP  239 (1405)
T ss_pred             hhhhccccchhhhhhhhhh----------hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC
Confidence            5667789999888765421          11112 124567899999999999999999999988888888877776653


Q ss_pred             C--CCCceEEEEeeCCCEEEEe
Q psy1242         493 G--FASPESVVMSREGVIVVNY  512 (540)
Q Consensus       493 ~--~~~v~~l~fspdg~~l~s~  512 (540)
                      .  ...|.+|+|-..-.++++.
T Consensus       240 ~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  240 VEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             cCCCcceeEEEEecceeEEEEe
Confidence            2  2368899998888887763

>KOG1275|consensus

Probab=93.81  E-value=0.46  Score=53.00  Aligned_cols=95  Identities=15%  Similarity=0.083  Sum_probs=69.5

Q ss_pred             EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242         352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNART  431 (540)
Q Consensus       352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~  431 (540)
                      +..|+.-..+..+|+++++..+..               .-..+.|+-++.      +++.+.+|...|+|.+-|.+.  
T Consensus       150 ~i~Gg~Q~~li~~Dl~~~~e~r~~---------------~v~a~~v~imR~------Nnr~lf~G~t~G~V~LrD~~s--  206 (1118)
T KOG1275|consen  150 LIMGGLQEKLIHIDLNTEKETRTT---------------NVSASGVTIMRY------NNRNLFCGDTRGTVFLRDPNS--  206 (1118)
T ss_pred             eeecchhhheeeeecccceeeeee---------------eccCCceEEEEe------cCcEEEeecccceEEeecCCc--
Confidence            455656667778899887776655               112233665654      568999999999999999776  


Q ss_pred             ccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEeC
Q psy1242         432 QSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL---------GPVLVHTT  480 (540)
Q Consensus       432 ~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D---------g~v~iw~~  480 (540)
                               .+.++++.+|.+.|..+.+  .|.+|++|+..         ..|+|||.
T Consensus       207 ---------~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  207 ---------FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             ---------Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence                     5688999999999976655  68899998754         34667764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.81  E-value=2  Score=41.92  Aligned_cols=165  Identities=12%  Similarity=0.094  Sum_probs=81.1

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCC-eEE-----EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNA-RIV-----QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g-~~~-----~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      .+++.-++.+ +++.-.++.+.++++... +.+     +.+.          ...-..+...+-.|+|+|    .++.|+
T Consensus        69 gI~y~g~~~~-vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~----------l~~~~~~N~G~EGla~D~----~~~~L~  133 (248)
T PF06977_consen   69 GITYLGNGRY-VLSEERDQRLYIFTIDDDTTSLDRADVQKIS----------LGFPNKGNKGFEGLAYDP----KTNRLF  133 (248)
T ss_dssp             EEEE-STTEE-EEEETTTTEEEEEEE----TT--EEEEEEEE-------------S---SS--EEEEEET----TTTEEE
T ss_pred             eEEEECCCEE-EEEEcCCCcEEEEEEeccccccchhhceEEe----------cccccCCCcceEEEEEcC----CCCEEE
Confidence            3455566664 444445888888887432 111     1110          000013445688999999    777777


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCcEEEEecCCCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL-VVSGSQLGPVLVHTTFGDLLRSLDPPSG  493 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~-lasgs~Dg~v~iw~~~g~~~~~l~~~~~  493 (540)
                      .+....-.+|+.++.........................+.+++++|.... ++-......+...+.+|+.+..+....+
T Consensus       134 v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g  213 (248)
T PF06977_consen  134 VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRG  213 (248)
T ss_dssp             EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STT
T ss_pred             EEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCc
Confidence            777777777887654110000000000000001123345788999997654 4445555566667899998876654432


Q ss_pred             -------CCCceEEEEeeCCCEEEEecCCeEEEE
Q psy1242         494 -------FASPESVVMSREGVIVVNYERGHIAAF  520 (540)
Q Consensus       494 -------~~~v~~l~fspdg~~l~s~~dg~I~lw  520 (540)
                             -.....|+|.++|.+.++++-+..+.|
T Consensus       214 ~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  214 FHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             GGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             ccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence                   114689999999998888876666554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4499|consensus

Probab=93.71  E-value=2.8  Score=39.94  Aligned_cols=107  Identities=17%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             CcceEEEEeccCccCCCcEE-EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc----CCCCEEEEEEcCCCCEEEE
Q psy1242         394 YGVVTCLSRSECNITADCFI-ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG----HEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l-~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~v~~spdg~~las  468 (540)
                      -+.-+.++|+.    +.+.+ .+-+.+-+|.-||.+-.++....    .+.+..+..    ....-..+++..+|.+.++
T Consensus       157 v~IsNgl~Wd~----d~K~fY~iDsln~~V~a~dyd~~tG~~sn----r~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va  228 (310)
T KOG4499|consen  157 VGISNGLAWDS----DAKKFYYIDSLNYEVDAYDYDCPTGDLSN----RKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA  228 (310)
T ss_pred             ccCCccccccc----cCcEEEEEccCceEEeeeecCCCcccccC----cceeEEeccCCCcCCCCCCcceEccCCcEEEE
Confidence            34456788987    65544 56778889999996544332211    122222221    1111234555778888888


Q ss_pred             EeCCCcEEE-EeCCCcEEEEecCCCCCCCceEEEEe-eCCCEEE
Q psy1242         469 GSQLGPVLV-HTTFGDLLRSLDPPSGFASPESVVMS-REGVIVV  510 (540)
Q Consensus       469 gs~Dg~v~i-w~~~g~~~~~l~~~~~~~~v~~l~fs-pdg~~l~  510 (540)
                      +=..|+|.- ...+|+.+.+++.+..  .|+++||- ++-.+++
T Consensus       229 ~~ng~~V~~~dp~tGK~L~eiklPt~--qitsccFgGkn~d~~y  270 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTTGKILLEIKLPTP--QITSCCFGGKNLDILY  270 (310)
T ss_pred             EecCcEEEEECCCCCcEEEEEEcCCC--ceEEEEecCCCccEEE
Confidence            877888854 4569999999999877  78999995 3333443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.58  E-value=3.7  Score=43.67  Aligned_cols=58  Identities=12%  Similarity=0.229  Sum_probs=37.6

Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEc
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHW  427 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~  427 (540)
                      |.. |...+ ++.|.+||.++++.+..+               .  -..|..|.|++    +|++++-.+.+ ++.|++.
T Consensus       117 G~L-L~~~~-~~~i~~yDw~~~~~i~~i---------------~--v~~vk~V~Ws~----~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  117 GNL-LGVKS-SDFICFYDWETGKLIRRI---------------D--VSAVKYVIWSD----DGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             SSS-EEEEE-TTEEEEE-TTT--EEEEE---------------S--S-E-EEEEE-T----TSSEEEEE-S--SEEEEEE
T ss_pred             CcE-EEEEC-CCCEEEEEhhHcceeeEE---------------e--cCCCcEEEEEC----CCCEEEEEeCC-eEEEEEe
Confidence            774 44443 558999999999999988               2  23489999999    99999888755 7777775


Q ss_pred             CC
Q psy1242         428 NA  429 (540)
Q Consensus       428 ~~  429 (540)
                      +.
T Consensus       173 ~~  174 (443)
T PF04053_consen  173 NL  174 (443)
T ss_dssp             -H
T ss_pred             cc
Confidence            53

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.30  E-value=6.1  Score=39.73  Aligned_cols=154  Identities=12%  Similarity=0.056  Sum_probs=76.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+..++||++ +++++.-+-+.-||--... -+...              ..-...|..+.|+|    ++.+.+.+ .
T Consensus       147 ~~~~~r~~dG~~-vavs~~G~~~~s~~~G~~~-w~~~~--------------r~~~~riq~~gf~~----~~~lw~~~-~  205 (302)
T PF14870_consen  147 INDITRSSDGRY-VAVSSRGNFYSSWDPGQTT-WQPHN--------------RNSSRRIQSMGFSP----DGNLWMLA-R  205 (302)
T ss_dssp             EEEEEE-TTS-E-EEEETTSSEEEEE-TT-SS--EEEE----------------SSS-EEEEEE-T----TS-EEEEE-T
T ss_pred             eEeEEECCCCcE-EEEECcccEEEEecCCCcc-ceEEc--------------cCccceehhceecC----CCCEEEEe-C
Confidence            556667899995 5666543444566643111 11110              23457899999999    77665544 7


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecC-CCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDP-PSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~-~~~~~~v  497 (540)
                      .|.|+.=+........      .+++..+..-.-.+..+++.++....|+|+ .|++..=...|+-=...+. ..-....
T Consensus       206 Gg~~~~s~~~~~~~~w------~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S~DgGktW~~~~~~~~~~~n~  278 (302)
T PF14870_consen  206 GGQIQFSDDPDDGETW------SEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVSTDGGKTWQKDRVGENVPSNL  278 (302)
T ss_dssp             TTEEEEEE-TTEEEEE---------B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEESSTTSS-EE-GGGTTSSS--
T ss_pred             CcEEEEccCCCCcccc------ccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEeCCCCccceECccccCCCCce
Confidence            8888876621100000      011111112233478999999988777665 5666654444543333322 1111146


Q ss_pred             eEEEEeeCCCEEEEecCCeEEEE
Q psy1242         498 ESVVMSREGVIVVNYERGHIAAF  520 (540)
Q Consensus       498 ~~l~fspdg~~l~s~~dg~I~lw  520 (540)
                      +.+.|..+.+-++.|.+|.|.-|
T Consensus       279 ~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  279 YRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEEEETTEEEEE-STTEEEEE
T ss_pred             EEEEEcCCCceEEECCCcEEEEe
Confidence            89999888888899999988765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.83  E-value=4.1  Score=42.26  Aligned_cols=58  Identities=16%  Similarity=0.116  Sum_probs=35.3

Q ss_pred             CCEEEEEEcCCCCEEEEEeCC-------------------CcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         452 QPVTSVAISAELGLVVSGSQL-------------------GPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       452 ~~V~~v~~spdg~~lasgs~D-------------------g~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                      .....++|.|||.+.++-+..                   |.|.-++.++..+..+.....  .+..++|+++|+++++
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r--np~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ--NPYGHSVDSWGDVFFC  200 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC--CCccceECCCCCEEEE
Confidence            447789999999876654421                   223223344433334433222  4678999999998776

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2079|consensus

Probab=92.58  E-value=0.51  Score=53.60  Aligned_cols=93  Identities=20%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      +..++.|+.-|.+...|+...          ..+...-..-.++|++++|+.+|..++.|-.+|.|.+||. +++.++.+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n----------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i  168 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN----------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI  168 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc----------cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence            457888888899988887642          1122222234578999999999999999999999999977 67888887


Q ss_pred             cCCCCCCCceEE---EEeeCCCEEEEecC
Q psy1242         489 DPPSGFASPESV---VMSREGVIVVNYER  514 (540)
Q Consensus       489 ~~~~~~~~v~~l---~fspdg~~l~s~~d  514 (540)
                      ..+..  +..++   .+..++..+.+++.
T Consensus       169 ~e~~a--p~t~vi~v~~t~~nS~llt~D~  195 (1206)
T KOG2079|consen  169 TEHGA--PVTGVIFVGRTSQNSKLLTSDT  195 (1206)
T ss_pred             eecCC--ccceEEEEEEeCCCcEEEEccC
Confidence            76655  44443   33445555666543

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.57  E-value=1.3  Score=49.05  Aligned_cols=107  Identities=22%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             cceEEEEeccCccCCCcEEEEEe------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242         395 GVVTCLSRSECNITADCFIASGS------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~las  468 (540)
                      ..+...+++|    +|+.++...      .|..-.||-....          +.......+.  ..+.-.|+|+|+.|++
T Consensus       350 ~~vsspaiSp----dG~~vA~v~~~~~~~~d~~s~Lwv~~~g----------g~~~~lt~g~--~~t~PsWspDG~~lw~  413 (591)
T PRK13616        350 GNITSAALSR----SGRQVAAVVTLGRGAPDPASSLWVGPLG----------GVAVQVLEGH--SLTRPSWSLDADAVWV  413 (591)
T ss_pred             cCcccceECC----CCCEEEEEEeecCCCCCcceEEEEEeCC----------CcceeeecCC--CCCCceECCCCCceEE
Confidence            4678899999    898886655      3555556644321          1122222332  3778899999998887


Q ss_pred             EeCCCcE-EEEeC--CCcEE-EEecC------CCCCCCceEEEEeeCCCEEEEecCCeEEE
Q psy1242         469 GSQLGPV-LVHTT--FGDLL-RSLDP------PSGFASPESVVMSREGVIVVNYERGHIAA  519 (540)
Q Consensus       469 gs~Dg~v-~iw~~--~g~~~-~~l~~------~~~~~~v~~l~fspdg~~l~s~~dg~I~l  519 (540)
                      .+....+ ++...  ++++. ..+.+      ..+  .|..+.|||||..++.-.+++|.+
T Consensus       414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g--~Issl~wSpDG~RiA~i~~g~v~V  472 (591)
T PRK13616        414 VVDGNTVVRVIRDPATGQLARTPVDASAVASRVPG--PISELQLSRDGVRAAMIIGGKVYL  472 (591)
T ss_pred             EecCcceEEEeccCCCceEEEEeccCchhhhccCC--CcCeEEECCCCCEEEEEECCEEEE
Confidence            7644232 33322  22221 11111      122  589999999999988855677766

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.57  E-value=6.2  Score=43.60  Aligned_cols=113  Identities=12%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEc--CCCCEEEEEeCC
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAIS--AELGLVVSGSQL  472 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s--pdg~~lasgs~D  472 (540)
                      ...+.+.-|.    -++.-+..+...++.|||.+...-         +.-..+ ...+.|.++.|.  |+|+.+++.+-.
T Consensus        30 ~~~~li~gss----~~k~a~V~~~~~~LtIWD~~~~~l---------E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~   95 (631)
T PF12234_consen   30 SNPSLISGSS----IKKIAVVDSSRSELTIWDTRSGVL---------EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFP   95 (631)
T ss_pred             CCcceEeecc----cCcEEEEECCCCEEEEEEcCCcEE---------EEeeee-cCCCceeeceeeecCCCCEEEEEEcC
Confidence            3444454444    344444455566899999876321         112223 456789999886  688899999989


Q ss_pred             CcEEEEeC-----C-----CcEEEEec--CCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         473 GPVLVHTT-----F-----GDLLRSLD--PPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       473 g~v~iw~~-----~-----g~~~~~l~--~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      ..|.++..     +     -..++.+.  .+.. .+|...+|.++|..++++ ++++.+++-.
T Consensus        96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~-h~Igds~Wl~~G~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen   96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP-HPIGDSIWLKDGTLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             cEEEEEEccchhhhcCCcccceeEEEEeecCCC-CCccceeEecCCeEEEEe-CCEEEEECCC
Confidence            99988632     1     12334332  2331 268899999999766654 6788888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.44  E-value=0.36  Score=33.94  Aligned_cols=31  Identities=32%  Similarity=0.464  Sum_probs=28.2

Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcC
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWN  428 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~  428 (540)
                      ...|++++|+|    ...+|+.|+.||.|.++.++
T Consensus        11 ~~~v~~~~w~P----~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCP----TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECC----CCCEEEEEECCCeEEEEECC
Confidence            45699999999    89999999999999999874

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.42  E-value=3.4  Score=40.53  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCcE-EEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSF-RVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv-~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...++++|....-++.+-.-|+. .++|.+.++...++..       ..-+.+.||.      .|||    ||.+|...-
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-------~~~RHfyGHG------vfs~----dG~~LYATE  132 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-------QEGRHFYGHG------VFSP----DGRLLYATE  132 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec-------ccCceeeccc------ccCC----CCcEEEeec
Confidence            45567778777666777666764 6789888776666522       1123345664      6899    999998765


Q ss_pred             CC-----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-------CCcE----------
Q psy1242         418 AD-----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-------LGPV----------  475 (540)
Q Consensus       418 ~D-----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-------Dg~v----------  475 (540)
                      .|     |.|-|||.+..          .+.+..+.+|.-.-..+.|.+||+.++.+..       -|..          
T Consensus       133 ndfd~~rGViGvYd~r~~----------fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS  202 (366)
T COG3490         133 NDFDPNRGVIGVYDAREG----------FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS  202 (366)
T ss_pred             CCCCCCCceEEEEecccc----------cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc
Confidence            44     67889997642          2446677888877888999999998877643       1111          


Q ss_pred             --EEEeCCCcEEEEecCC--CCCCCceEEEEeeCCCEEEE
Q psy1242         476 --LVHTTFGDLLRSLDPP--SGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       476 --~iw~~~g~~~~~l~~~--~~~~~v~~l~fspdg~~l~s  511 (540)
                        .+...+|.++.....+  ..-..|..++..+||.+++.
T Consensus       203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfg  242 (366)
T COG3490         203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG  242 (366)
T ss_pred             EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence              1122456665444333  11226788888888887765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.22  E-value=7.1  Score=39.53  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=66.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.+++-  -+.+|+++.  .+.|.+|++...+ ....-.              ......++++...      +++|+.|.
T Consensus        91 V~ai~~--~~~~lv~~~--g~~l~v~~l~~~~~l~~~~~--------------~~~~~~i~sl~~~------~~~I~vgD  146 (321)
T PF03178_consen   91 VTAICS--FNGRLVVAV--GNKLYVYDLDNSKTLLKKAF--------------YDSPFYITSLSVF------KNYILVGD  146 (321)
T ss_dssp             EEEEEE--ETTEEEEEE--TTEEEEEEEETTSSEEEEEE--------------E-BSSSEEEEEEE------TTEEEEEE
T ss_pred             ceEhhh--hCCEEEEee--cCEEEEEEccCcccchhhhe--------------ecceEEEEEEecc------ccEEEEEE
Confidence            445532  244454444  5899999998777 443321              1223366777664      46999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                      ....+.++.++...          ..+..+  ......++++.+-++++.++.+..+|.+.+.
T Consensus       147 ~~~sv~~~~~~~~~----------~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l  199 (321)
T PF03178_consen  147 AMKSVSLLRYDEEN----------NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVL  199 (321)
T ss_dssp             SSSSEEEEEEETTT----------E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEE
T ss_pred             cccCEEEEEEEccC----------CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEE
Confidence            99999988665421          112222  2234568888888666799999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=91.91  E-value=4.3  Score=42.57  Aligned_cols=125  Identities=18%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE------EEec------c---cceeee-------------eeEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ------IIFG------H---YGVVTS-------------RIVQ  388 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~------~l~~------~---~~~v~~-------------~~~~  388 (540)
                      +.+.++.++++..- +++|..+|.|-||.....+.-.      ....      |   .+.+..             ....
T Consensus         2 ~~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    2 VSVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             --EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             ceEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            34677777888664 6889899999998765433221      1100      0   111110             2234


Q ss_pred             EeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceE--Eecc------CCCCEEEEEEc
Q psy1242         389 IIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRA--TLTG------HEQPVTSVAIS  460 (540)
Q Consensus       389 ~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~--~l~~------h~~~V~~v~~s  460 (540)
                      .+...++.|++++.|.     =.+++.|..+|++.|.|++...           .+.  .+..      ....|+++.|+
T Consensus        81 l~~~~~g~vtal~~S~-----iGFvaigy~~G~l~viD~RGPa-----------vI~~~~i~~~~~~~~~~~~vt~ieF~  144 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSD-----IGFVAIGYESGSLVVIDLRGPA-----------VIYNENIRESFLSKSSSSYVTSIEFS  144 (395)
T ss_dssp             EE---S-SEEEEEE-B-----TSEEEEEETTSEEEEEETTTTE-----------EEEEEEGGG--T-SS----EEEEEEE
T ss_pred             heeccCCcEeEEecCC-----CcEEEEEecCCcEEEEECCCCe-----------EEeeccccccccccccccCeeEEEEE
Confidence            4456689999999984     4599999999999999997622           111  1112      23468888886


Q ss_pred             C-----CC---CEEEEEeCCCcEEEE
Q psy1242         461 A-----EL---GLVVSGSQLGPVLVH  478 (540)
Q Consensus       461 p-----dg---~~lasgs~Dg~v~iw  478 (540)
                      -     |+   -+++.|...|.+.++
T Consensus       145 vm~~~~D~ySSi~L~vGTn~G~v~~f  170 (395)
T PF08596_consen  145 VMTLGGDGYSSICLLVGTNSGNVLTF  170 (395)
T ss_dssp             EEE-TTSSSEEEEEEEEETTSEEEEE
T ss_pred             EEecCCCcccceEEEEEeCCCCEEEE
Confidence            2     33   368889999999877

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.52  E-value=13  Score=36.40  Aligned_cols=147  Identities=16%  Similarity=0.141  Sum_probs=80.0

Q ss_pred             cCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEE
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLL  424 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~l  424 (540)
                      ..+++ |+.|..+| +.+++... .+.....                 +...|..+...|    +-+.|+.-+ |+.+.+
T Consensus         5 ~~~~~-L~vGt~~G-l~~~~~~~~~~~~~i~-----------------~~~~I~ql~vl~----~~~~llvLs-d~~l~~   60 (275)
T PF00780_consen    5 SWGDR-LLVGTEDG-LYVYDLSDPSKPTRIL-----------------KLSSITQLSVLP----ELNLLLVLS-DGQLYV   60 (275)
T ss_pred             cCCCE-EEEEECCC-EEEEEecCCccceeEe-----------------ecceEEEEEEec----ccCEEEEEc-CCccEE
Confidence            45665 57778888 89998832 2333222                 233488898888    555665554 599999


Q ss_pred             EEcCCCcccccCCCCCCcce----EEeccCCCCEEEEE--EcCCC-CEEEEEeCCCcEEE--EeC---CC-cEEEEecCC
Q psy1242         425 WHWNARTQSIVGETDTPTPR----ATLTGHEQPVTSVA--ISAEL-GLVVSGSQLGPVLV--HTT---FG-DLLRSLDPP  491 (540)
Q Consensus       425 Wd~~~~~~~~~~~~~~~~~~----~~l~~h~~~V~~v~--~spdg-~~lasgs~Dg~v~i--w~~---~g-~~~~~l~~~  491 (540)
                      +++........... ...+.    ..-......+...+  -...+ ..++.+. ...|.+  |..   .. +..+.+..+
T Consensus        61 ~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp  138 (275)
T PF00780_consen   61 YDLDSLEPVSTSAP-LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLP  138 (275)
T ss_pred             EEchhhcccccccc-ccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcC
Confidence            99875332110000 00000    00111222344444  11233 3455444 447766  433   23 566777766


Q ss_pred             CCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         492 SGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      .   .+..++|.  +..++.|......+.|++
T Consensus       139 ~---~~~~i~~~--~~~i~v~~~~~f~~idl~  165 (275)
T PF00780_consen  139 D---PPSSIAFL--GNKICVGTSKGFYLIDLN  165 (275)
T ss_pred             C---CcEEEEEe--CCEEEEEeCCceEEEecC
Confidence            4   57889998  556666655666777766

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.18  E-value=4.8  Score=42.53  Aligned_cols=149  Identities=13%  Similarity=0.113  Sum_probs=88.3

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc----CCCcEEEEEeCCCc
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI----TADCFIASGSADCT  421 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~----~dg~~l~sgs~Dgt  421 (540)
                      .|...|+..|..-..+.-.|++.|+.+...               .-|.+.  -+.+.|..-    .+.+.|+--| +..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW---------------~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~s  538 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEW---------------DLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYS  538 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEe---------------ecCCcc--eeecCCchhHHhcCccceEEeec-ccc
Confidence            345545566777778888899999998888               445443  345555100    0223444333 444


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCCCCce
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTG--HEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGFASPE  498 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~~~v~  498 (540)
                      |---|.+...+.+        .+...+.  ......|.. ..+..++|.||..|.|+++++-|.-..+ +.+-+.  .|.
T Consensus       539 vFrIDPR~~gNKi--------~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk  607 (776)
T COG5167         539 VFRIDPRARGNKI--------KVVESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIK  607 (776)
T ss_pred             eEEecccccCCce--------eeeeehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCccccc--cee
Confidence            4333433322111        0111111  111222222 3355699999999999999886654443 344444  688


Q ss_pred             EEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         499 SVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       499 ~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      .+..+.+|++|++.....+.+-|+.
T Consensus       608 ~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         608 HIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eeEeecCCcEEEEeecceEEEEecc
Confidence            9999999999988778888888865

>KOG1916|consensus

Probab=91.05  E-value=0.29  Score=54.49  Aligned_cols=113  Identities=19%  Similarity=0.156  Sum_probs=69.4

Q ss_pred             CCcEEEEEcc--CCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccccc
Q psy1242         358 DNSFRVFSTD--NARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIV  435 (540)
Q Consensus       358 Dgsv~iwd~~--~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~  435 (540)
                      -|.+.||+++  .|+....+.          +.....-...+.-|.|+|- +...-++..+-.++++++..++...    
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~----------v~~~~p~gs~~~~V~wcp~-~~~~~~ic~~~~~~~i~lL~~~ra~----  216 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLE----------VTPITPYGSDPQLVSWCPI-AVNKVYICYGLKGGEIRLLNINRAL----  216 (1283)
T ss_pred             hhhhheeehHhhccccccceE----------EeecCcCCCCcceeeeccc-ccccceeeeccCCCceeEeeechHH----
Confidence            3678899876  455554441          1111233344566677661 1145677777788999988776522    


Q ss_pred             CCCCCCcceEEeccCCCCEEEE-----------EEcCCCCEEEEEeCCCcEEEEeC--CCc----EEEEecCCCC
Q psy1242         436 GETDTPTPRATLTGHEQPVTSV-----------AISAELGLVVSGSQLGPVLVHTT--FGD----LLRSLDPPSG  493 (540)
Q Consensus       436 ~~~~~~~~~~~l~~h~~~V~~v-----------~~spdg~~lasgs~Dg~v~iw~~--~g~----~~~~l~~~~~  493 (540)
                              ...+.+|...++.+           .+||||..+|.++.||.+++|..  +|+    ++...+.|.+
T Consensus       217 --------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  217 --------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             --------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence                    23334565544433           37999999999999999999832  554    3445555654

>KOG2444|consensus

Probab=91.04  E-value=0.57  Score=44.31  Aligned_cols=100  Identities=11%  Similarity=0.071  Sum_probs=59.7

Q ss_pred             EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEE-EEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC-LSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~-l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      +++|..+|.|.+|...--.      .|.+.+        ..-...|.| |.--.    ++.+..+++.||.|+.|.+.. 
T Consensus        73 ~~vG~~dg~v~~~n~n~~g------~~~d~~--------~s~~e~i~~~Ip~~~----~~~~~c~~~~dg~ir~~n~~p-  133 (238)
T KOG2444|consen   73 LMVGTSDGAVYVFNWNLEG------AHSDRV--------CSGEESIDLGIPNGR----DSSLGCVGAQDGRIRACNIKP-  133 (238)
T ss_pred             EEeecccceEEEecCCccc------hHHHhh--------hcccccceecccccc----ccceeEEeccCCceeeecccc-
Confidence            6889999999999876111      111111        111122322 22222    566889999999999999764 


Q ss_pred             cccccCCCCCCcceEEeccCC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEeC
Q psy1242         431 TQSIVGETDTPTPRATLTGHE-QPVTSVAISAELGLVVSG--SQLGPVLVHTT  480 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~-~~V~~v~~spdg~~lasg--s~Dg~v~iw~~  480 (540)
                                .+.+...-.|+ ..+.....+..++.++++  |.|..++.|+.
T Consensus       134 ----------~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  134 ----------NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ----------CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence                      23344444565 455555556666666666  67777777753

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.17  E-value=6.8  Score=38.34  Aligned_cols=108  Identities=19%  Similarity=0.094  Sum_probs=65.3

Q ss_pred             ceEEEEeccCccCCCcEEEEEe-CC--CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy1242         396 VVTCLSRSECNITADCFIASGS-AD--CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL  472 (540)
Q Consensus       396 ~Vt~l~~sp~~~~dg~~l~sgs-~D--gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D  472 (540)
                      .+.+.++++    +|+.++... .+  ..+.++....            .....+.+.  .++...|++++...+....+
T Consensus        25 ~~~s~AvS~----dg~~~A~v~~~~~~~~L~~~~~~~------------~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~   86 (253)
T PF10647_consen   25 DVTSPAVSP----DGSRVAAVSEGDGGRSLYVGPAGG------------PVRPVLTGG--SLTRPSWDPDGWVWTVDDGS   86 (253)
T ss_pred             cccceEECC----CCCeEEEEEEcCCCCEEEEEcCCC------------cceeeccCC--ccccccccCCCCEEEEEcCC
Confidence            688899999    888776655 23  3444444322            122222333  67788999998777776666


Q ss_pred             CcEEEE--eCCCcEE-EEecCCCCCCCceEEEEeeCCCEEEEe----cCCeEEEEe
Q psy1242         473 GPVLVH--TTFGDLL-RSLDPPSGFASPESVVMSREGVIVVNY----ERGHIAAFT  521 (540)
Q Consensus       473 g~v~iw--~~~g~~~-~~l~~~~~~~~v~~l~fspdg~~l~s~----~dg~I~lw~  521 (540)
                      ...+++  ..++... ..+........|..+.+||||..++.-    ++++|.+=.
T Consensus        87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~  142 (253)
T PF10647_consen   87 GGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG  142 (253)
T ss_pred             CceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence            666665  2344332 222222111168999999999988763    256776654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=89.81  E-value=1.9  Score=45.43  Aligned_cols=68  Identities=19%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             EEEcCCCCEEEEEeCC----------C-cEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCc
Q psy1242         457 VAISAELGLVVSGSQL----------G-PVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  525 (540)
Q Consensus       457 v~~spdg~~lasgs~D----------g-~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~  525 (540)
                      ++.+|.|..+|....+          . .|.|++..|+++.++.-..+  .+.++.|+.+..+++...+|.+++||+.|+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~--~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSG--RIVGMGWTDDEELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCC--CEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence            4455555555555433          2 48889999999988876665  789999999988988899999999999888


Q ss_pred             E
Q psy1242         526 R  526 (540)
Q Consensus       526 ~  526 (540)
                      .
T Consensus       112 ~  112 (410)
T PF04841_consen  112 F  112 (410)
T ss_pred             e
Confidence            8

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=89.26  E-value=31  Score=36.03  Aligned_cols=68  Identities=18%  Similarity=0.073  Sum_probs=39.7

Q ss_pred             CCCEEEEEeCCCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee
Q psy1242         462 ELGLVVSGSQLGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       462 dg~~lasgs~Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      .+..++.++.+|.+...+ .+|+.+......... ...+..+ -+|.+++...+|.|++.|.+ |+.+....
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-LLTAPVL-YNGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-cccCCEE-ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            345666777788876654 477765543321110 1122222 25666556678999999875 88776654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.01  E-value=25  Score=34.87  Aligned_cols=173  Identities=13%  Similarity=0.127  Sum_probs=102.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+.|+|+.+.|+++.. ...-.|+=...|+.+.++.             +.+-. .--.|.+..    +|++.++--+
T Consensus        88 vS~LTynp~~rtLFav~n-~p~~iVElt~~GdlirtiP-------------L~g~~-DpE~Ieyig----~n~fvi~dER  148 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTN-KPAAIVELTKEGDLIRTIP-------------LTGFS-DPETIEYIG----GNQFVIVDER  148 (316)
T ss_pred             ccceeeCCCcceEEEecC-CCceEEEEecCCceEEEec-------------ccccC-ChhHeEEec----CCEEEEEehh
Confidence            677889999998776664 4455556555688888772             23322 223456655    7777787778


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE----EEEecCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL----LRSLDPPSGF  494 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~----~~~l~~~~~~  494 (540)
                      +.++.+..+...+....... ..-++..........-.++|.|..+.+..+-+-.-+.|+..++..    +.....+...
T Consensus       149 ~~~l~~~~vd~~t~~~~~~~-~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         149 DRALYLFTVDADTTVISAKV-QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             cceEEEEEEcCCccEEeccc-eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence            89988888765432111000 000111111224567789999998888888877777775322111    1111112110


Q ss_pred             -----CCceEEEEeeC-CCEEEEe-cCCeEEEEecCCcEEEeee
Q psy1242         495 -----ASPESVVMSRE-GVIVVNY-ERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       495 -----~~v~~l~fspd-g~~l~s~-~dg~I~lw~~~g~~l~~~~  531 (540)
                           ..|.++.|.+. +..++.+ +++.+.-.+..|..+..+.
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls  271 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS  271 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE
Confidence                 13677888764 5555555 4577888888888766554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.70  E-value=2.1  Score=44.14  Aligned_cols=90  Identities=11%  Similarity=0.049  Sum_probs=54.2

Q ss_pred             CCcEEEEE---------eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         409 ADCFIASG---------SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       409 dg~~l~sg---------s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      |+++++..         +..+.+.|+|+.+..            +..+......+....|||+|+.+|... ++.|.+..
T Consensus         3 d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~------------~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~   69 (353)
T PF00930_consen    3 DGKFVLFATNYTKQWRHSFKGDYYIYDIETGE------------ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRD   69 (353)
T ss_dssp             TSSEEEEEEEEEEESSSEEEEEEEEEETTTTE------------EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEES
T ss_pred             CCCeEEEEECcEEeeeeccceeEEEEecCCCc------------eEECcCCccccccceeecCCCeeEEEe-cCceEEEE
Confidence            66666553         224567888887633            223322256677899999999988886 57888875


Q ss_pred             C-CCcEEEEecCCC-C---------------CCCceEEEEeeCCCEEEEe
Q psy1242         480 T-FGDLLRSLDPPS-G---------------FASPESVVMSREGVIVVNY  512 (540)
Q Consensus       480 ~-~g~~~~~l~~~~-~---------------~~~v~~l~fspdg~~l~s~  512 (540)
                      . ++ ....+.... .               ...-..+-|||||+.|+..
T Consensus        70 ~~~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~  118 (353)
T PF00930_consen   70 LATG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL  118 (353)
T ss_dssp             STTS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred             CCCC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence            5 44 333332211 0               0023578899999999974

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1897|consensus

Probab=88.60  E-value=50  Score=38.03  Aligned_cols=169  Identities=12%  Similarity=0.098  Sum_probs=88.2

Q ss_pred             cCcceeeEEEEEEEecC--CCE---EEEEEecCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         331 FSQKLRVRHNCFVTTVD--SRF---LLACGFWDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spd--g~~---llasgs~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      ..+.+...+.|+.++|-  ++.   ++|.|.|+..+++--.. +...+....-..           ..-...|.-..+-.
T Consensus       525 ~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~-----------~~iPRSIl~~~~e~  593 (1096)
T KOG1897|consen  525 SHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG-----------EIIPRSILLTTFEG  593 (1096)
T ss_pred             eeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC-----------CccchheeeEEeec
Confidence            34455666888888865  444   78999999887765433 222221110000           00112233334443


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL  484 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~  484 (540)
                          |..+|.++..||.+.-+-++..++..      ....+..-| ..++.==.|+..++.-+-++.|+-..++..++++
T Consensus       594 ----d~~yLlvalgdG~l~~fv~d~~tg~l------sd~Kk~~lG-t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL  662 (1096)
T KOG1897|consen  594 ----DIHYLLVALGDGALLYFVLDINTGQL------SDRKKVTLG-TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL  662 (1096)
T ss_pred             ----cceEEEEEcCCceEEEEEEEcccceE------ccccccccC-CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE
Confidence                67899999999999877666544321      111111112 2233333555555555566667887788777776


Q ss_pred             EEEecCCCCCCCceEEEEeeC--CCEEEEecCCeEEEEecC
Q psy1242         485 LRSLDPPSGFASPESVVMSRE--GVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~fspd--g~~l~s~~dg~I~lw~~~  523 (540)
                      +.+--.-+.  .-..+.|+.+  +..|+++..+.+.+..++
T Consensus       663 v~spls~ke--v~~~c~f~s~a~~d~l~~~~~~~l~i~tid  701 (1096)
T KOG1897|consen  663 VYSPLSLKE--VNHMCPFNSDAYPDSLASANGGALTIGTID  701 (1096)
T ss_pred             EEeccchHH--hhhhcccccccCCceEEEecCCceEEEEec
Confidence            543221111  0011223222  335555556666666555

>KOG2444|consensus

Probab=88.29  E-value=1.9  Score=40.80  Aligned_cols=104  Identities=14%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242         409 ADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR  486 (540)
Q Consensus       409 dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~  486 (540)
                      -+..++.|+.+|.|.+|.++...          ....... +-....+.|..-.++.+..+++.||.|+.|.. -++.+.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g----------~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g  138 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEG----------AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG  138 (238)
T ss_pred             cCceEEeecccceEEEecCCccc----------hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceee
Confidence            34578899999999999876311          1111111 22222233333345568889999999999865 455555


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEEe---cCCeEEEEecC
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVNY---ERGHIAAFTMN  523 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s~---~dg~I~lw~~~  523 (540)
                      ....|.. .++..+..+..+++++.+   .+..++.|++.
T Consensus       139 ~~g~h~~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  139 YVGQHNF-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeccccC-CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            5544542 244555555555555553   45667777654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=86.98  E-value=38  Score=34.50  Aligned_cols=170  Identities=14%  Similarity=0.115  Sum_probs=87.8

Q ss_pred             EEEecCCCEEEEE-EecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC
Q psy1242         342 FVTTVDSRFLLAC-GFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC  420 (540)
Q Consensus       342 ~~~spdg~~llas-gs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg  420 (540)
                      ++++.||+++++. .+--.+|.|-|+..++.+..+..                .+   |.-.-|.   ..+.+.+-|.||
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~----------------PG---C~~iyP~---~~~~F~~lC~DG  157 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT----------------PG---CWLIYPS---GNRGFSMLCGDG  157 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG----------------TS---EEEEEEE---ETTEEEEEETTS
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC----------------CC---EEEEEec---CCCceEEEecCC
Confidence            4668999987665 34456899999999998887721                11   2222331   234577788888


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEeccCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCc---EEEEecCC-----
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPV-TSVAISAELGLVVSGSQLGPVLVHTTFGD---LLRSLDPP-----  491 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V-~~v~~spdg~~lasgs~Dg~v~iw~~~g~---~~~~l~~~-----  491 (540)
                      ++.-..+.......      .+....+..-.+++ ..-+++..+..++--+..|.|+--+.++.   ....+..-     
T Consensus       158 sl~~v~Ld~~Gk~~------~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~  231 (342)
T PF06433_consen  158 SLLTVTLDADGKEA------QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK  231 (342)
T ss_dssp             CEEEEEETSTSSEE------EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH
T ss_pred             ceEEEEECCCCCEe------EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc
Confidence            88877776421110      01111222222222 22334445555555677777765433332   22222211     


Q ss_pred             -CCCC--CceEEEEeeCCCEEEE----ecC-------CeEEEEecC-CcEEEeeecCCcceec
Q psy1242         492 -SGFA--SPESVVMSREGVIVVN----YER-------GHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       492 -~~~~--~v~~l~fspdg~~l~s----~~d-------g~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                       .+|.  .-..+++++....|..    +.+       ..|.++|+. ++.++.+..+.++.+|
T Consensus       232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si  294 (342)
T PF06433_consen  232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSI  294 (342)
T ss_dssp             HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEE
T ss_pred             ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceE
Confidence             0110  1235788876654443    222       237777877 7888877755555444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.89  E-value=41  Score=33.84  Aligned_cols=112  Identities=14%  Similarity=0.122  Sum_probs=59.8

Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      .-.+.+..+..++    ||++++.++.-....-||--...         .++  .-..-...|..+.|+|++.+.+.+ +
T Consensus       142 ~~~gs~~~~~r~~----dG~~vavs~~G~~~~s~~~G~~~---------w~~--~~r~~~~riq~~gf~~~~~lw~~~-~  205 (302)
T PF14870_consen  142 ETSGSINDITRSS----DGRYVAVSSRGNFYSSWDPGQTT---------WQP--HNRNSSRRIQSMGFSPDGNLWMLA-R  205 (302)
T ss_dssp             S----EEEEEE-T----TS-EEEEETTSSEEEEE-TT-SS----------EE--EE--SSS-EEEEEE-TTS-EEEEE-T
T ss_pred             CCcceeEeEEECC----CCcEEEEECcccEEEEecCCCcc---------ceE--EccCccceehhceecCCCCEEEEe-C
Confidence            3446788888888    99988888766666778732211         111  112245789999999998876644 8


Q ss_pred             CCcEEEEe--CCCcEEEE-ecCC-CCCCCceEEEEeeCCCEEEEecCCeEEE
Q psy1242         472 LGPVLVHT--TFGDLLRS-LDPP-SGFASPESVVMSREGVIVVNYERGHIAA  519 (540)
Q Consensus       472 Dg~v~iw~--~~g~~~~~-l~~~-~~~~~v~~l~fspdg~~l~s~~dg~I~l  519 (540)
                      .|.|+.-+  ..++.-.. +... .....+..+++.+++.+.++|..|.+..
T Consensus       206 Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  206 GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred             CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence            88888754  22222111 1111 2222467899999999888887776543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.79  E-value=32  Score=32.55  Aligned_cols=150  Identities=15%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             CEEEEEEecCCcEEEEEccC--CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC---C---
Q psy1242         349 RFLLACGFWDNSFRVFSTDN--ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD---C---  420 (540)
Q Consensus       349 ~~llasgs~Dgsv~iwd~~~--g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D---g---  420 (540)
                      ..|+++ ...+.|.+|++..  .+....+                .--+.|..+..+.    .|++|+|--.+   .   
T Consensus        29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F----------------~Tv~~V~~l~y~~----~GDYlvTlE~k~~~~~~~   87 (215)
T PF14761_consen   29 DALFVA-ASGCKVEVYDLEQEECPLLCTF----------------STVGRVLQLVYSE----AGDYLVTLEEKNKRSPVD   87 (215)
T ss_pred             ceEEEE-cCCCEEEEEEcccCCCceeEEE----------------cchhheeEEEecc----ccceEEEEEeecCCccce
Confidence            445444 3467899999883  2344444                2347899999999    89999986432   2   


Q ss_pred             cEEEE-EcCCC--cccc-----cCCCC------C-CcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE
Q psy1242         421 TVLLW-HWNAR--TQSI-----VGETD------T-PTPRATLT-GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL  484 (540)
Q Consensus       421 tV~lW-d~~~~--~~~~-----~~~~~------~-~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~  484 (540)
                      .+|+| +++..  ....     +|...      . ...+..+. .-...+.|++..|-..-|+.|+. +++.+|...-+.
T Consensus        88 fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~  166 (215)
T PF14761_consen   88 FVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQT  166 (215)
T ss_pred             EEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEE
Confidence            45654 22211  1110     11000      0 00011110 12345678888886555566664 466666331111


Q ss_pred             E-----------EEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEec
Q psy1242         485 L-----------RSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTM  522 (540)
Q Consensus       485 ~-----------~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~  522 (540)
                      .           +.+-.+.....+..+++.  +.++|.-++..++++.+
T Consensus       167 ~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  167 IQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             EecccccEEechhhhhheecCceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence            1           111112222235566664  56888887888777654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=85.45  E-value=35  Score=35.37  Aligned_cols=68  Identities=16%  Similarity=0.009  Sum_probs=37.6

Q ss_pred             EecCCCEEEEEEecCCc--EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242         344 TTVDSRFLLACGFWDNS--FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       344 ~spdg~~llasgs~Dgs--v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      |++||++||.++..||.  +.+.|+.+++..+..               .+-.+......++|    +++.++-.....+
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT---------------dg~g~~~~g~~~s~----~~~~~~Yv~~~~~  103 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT---------------DGPGDNTFGGFLSP----DDRALYYVKNGRS  103 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------------------SS-B-TTT-EE-T----TSSEEEEEETTTE
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccCEEEECc---------------cCCCCCccceEEec----CCCeEEEEECCCe
Confidence            48999998888887776  555578888877655               22112222345567    6777765555567


Q ss_pred             EEEEEcCCC
Q psy1242         422 VLLWHWNAR  430 (540)
Q Consensus       422 V~lWd~~~~  430 (540)
                      |+--|+++.
T Consensus       104 l~~vdL~T~  112 (386)
T PF14583_consen  104 LRRVDLDTL  112 (386)
T ss_dssp             EEEEETTT-
T ss_pred             EEEEECCcC
Confidence            777777763

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=85.08  E-value=14  Score=40.93  Aligned_cols=105  Identities=13%  Similarity=0.118  Sum_probs=65.3

Q ss_pred             EecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccc
Q psy1242         355 GFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSI  434 (540)
Q Consensus       355 gs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~  434 (540)
                      .+...++.|||...+.....-             . ....+.|..+.|...  ++|+.+++.|....|.++.-...  ..
T Consensus        47 ~~~~~~LtIWD~~~~~lE~~~-------------~-f~~~~~I~dLDWtst--~d~qsiLaVGf~~~v~l~~Q~R~--dy  108 (631)
T PF12234_consen   47 DSSRSELTIWDTRSGVLEYEE-------------S-FSEDDPIRDLDWTST--PDGQSILAVGFPHHVLLYTQLRY--DY  108 (631)
T ss_pred             ECCCCEEEEEEcCCcEEEEee-------------e-ecCCCceeeceeeec--CCCCEEEEEEcCcEEEEEEccch--hh
Confidence            333457899999877643222             1 145788999999762  38999999999999999963210  11


Q ss_pred             cCCCCCCcceEEe--ccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         435 VGETDTPTPRATL--TGHE-QPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       435 ~~~~~~~~~~~~l--~~h~-~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      ........++..+  ..|+ .+|.+..|.++|.+++.++  ..+.|++
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence            1111112233332  3444 5789999999997665443  4566654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.48  E-value=33  Score=38.57  Aligned_cols=121  Identities=15%  Similarity=0.117  Sum_probs=70.8

Q ss_pred             ceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccc---cCC------CCCCcceEEeccCCCCEEEEEEc--CCCC
Q psy1242         396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSI---VGE------TDTPTPRATLTGHEQPVTSVAIS--AELG  464 (540)
Q Consensus       396 ~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~---~~~------~~~~~~~~~l~~h~~~V~~v~~s--pdg~  464 (540)
                      .|+-|....  .++...|+.+..||.|.+|.+..--...   ...      ....+|...+. -...+++++++  ...+
T Consensus       102 tIN~i~v~~--lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  102 TINFIKVGD--LGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR  178 (717)
T ss_pred             eeeEEEecc--cCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce
Confidence            356665543  2256788999999999999863210000   000      01122333333 34478999998  7888


Q ss_pred             EEEEEeCCCcEEEEe--C-CCcEE--EEecCCCCCCCceEEEEeeCC-----C-EEEEe-cCCeEEEEec
Q psy1242         465 LVVSGSQLGPVLVHT--T-FGDLL--RSLDPPSGFASPESVVMSREG-----V-IVVNY-ERGHIAAFTM  522 (540)
Q Consensus       465 ~lasgs~Dg~v~iw~--~-~g~~~--~~l~~~~~~~~v~~l~fspdg-----~-~l~s~-~dg~I~lw~~  522 (540)
                      +||.++....|.|+.  . +.+..  .... +..  .|.+|+|-++.     . .|++. -.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~-~~h--NIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQ-HSH--NIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccc-ccc--CCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            999999988888762  2 11111  1111 222  57899996643     2 44443 3688887776

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=83.70  E-value=30  Score=35.81  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=56.0

Q ss_pred             cceEEEEeccCccCCCcEEEEEe-----------CCC-cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242         395 GVVTCLSRSECNITADCFIASGS-----------ADC-TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE  462 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs-----------~Dg-tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd  462 (540)
                      .....|+|.+    +|+.+++-.           ..+ .|.+++-....+.       ......+...-....++++.++
T Consensus        14 ~~P~~ia~d~----~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~-------~d~~~vfa~~l~~p~Gi~~~~~   82 (367)
T TIGR02604        14 RNPIAVCFDE----RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK-------YDKSNVFAEELSMVTGLAVAVG   82 (367)
T ss_pred             CCCceeeECC----CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC-------cceeEEeecCCCCccceeEecC
Confidence            4567889999    888777643           223 6766653322211       1122333333345678999988


Q ss_pred             CCEEEEEeCCCcEEEEeCCC------c---EEEEecCCC--CCCCceEEEEeeCCCEEEE
Q psy1242         463 LGLVVSGSQLGPVLVHTTFG------D---LLRSLDPPS--GFASPESVVMSREGVIVVN  511 (540)
Q Consensus       463 g~~lasgs~Dg~v~iw~~~g------~---~~~~l~~~~--~~~~v~~l~fspdg~~l~s  511 (540)
                      + ++++ +.....++.+..+      +   ++..+....  ....+..++|.|||.+.++
T Consensus        83 G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~  140 (367)
T TIGR02604        83 G-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN  140 (367)
T ss_pred             C-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence            8 5544 4444334533322      2   122232211  0114678999999987665

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.49  E-value=40  Score=33.38  Aligned_cols=166  Identities=17%  Similarity=0.125  Sum_probs=84.3

Q ss_pred             EEecCCCEEEEEEe----cCCcEEEEEccCC-eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         343 VTTVDSRFLLACGF----WDNSFRVFSTDNA-RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       343 ~~spdg~~llasgs----~Dgsv~iwd~~~g-~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .|||||++|.|+-.    .-|.|-|||.+.+ +.+..+               ..|.-.-..+.|.+    ||+.++.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~---------------~t~GiGpHev~lm~----DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF---------------STHGIGPHEVTLMA----DGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc---------------ccCCcCcceeEEec----CCcEEEEeC
Confidence            46999997766632    1256889998733 222333               56666666788888    999887653


Q ss_pred             CCCcEEEE-Ec-------CCCcccccC-CCCCCcce--EEec--cCCCCEEEEEEcCCCCEEEEEeCCCc-----EEE-E
Q psy1242         418 ADCTVLLW-HW-------NARTQSIVG-ETDTPTPR--ATLT--GHEQPVTSVAISAELGLVVSGSQLGP-----VLV-H  478 (540)
Q Consensus       418 ~DgtV~lW-d~-------~~~~~~~~~-~~~~~~~~--~~l~--~h~~~V~~v~~spdg~~lasgs~Dg~-----v~i-w  478 (540)
                        |-|..- |.       +..+...+- ....+..+  .++.  -+...|..++.-+||..++-+-..|.     -.+ .
T Consensus       181 --GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~  258 (366)
T COG3490         181 --GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGH  258 (366)
T ss_pred             --CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceee
Confidence              334433 11       111100000 00001111  1222  23445777777777765554433322     111 1


Q ss_pred             eCCCcEEEEecCCCC-----CCCceEEEEeeCCCEEEE-e-cCCeEEEEecC-CcEEEe
Q psy1242         479 TTFGDLLRSLDPPSG-----FASPESVVMSREGVIVVN-Y-ERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       479 ~~~g~~~~~l~~~~~-----~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~-g~~l~~  529 (540)
                      -..|+.+.-+..++.     ...|-+|+.+.+...++. + ..+...+||.. |..+..
T Consensus       259 ~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         259 FRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             ccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            224444444443322     013567777765555544 4 34677889977 655543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.45  E-value=5.2  Score=26.56  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=25.7

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEE
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQII  375 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l  375 (540)
                      |++++|+++...+++|.++|..+++.+..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i   30 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATI   30 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            578888888888999999999988887776

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG3630|consensus

Probab=83.29  E-value=9  Score=44.38  Aligned_cols=116  Identities=14%  Similarity=0.007  Sum_probs=69.2

Q ss_pred             CCcE--EEEEeCCCcEEEEEcCCCcccccCCCCCCcce---EEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC--
Q psy1242         409 ADCF--IASGSADCTVLLWHWNARTQSIVGETDTPTPR---ATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT--  480 (540)
Q Consensus       409 dg~~--l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~---~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~--  480 (540)
                      |+..  ++..+.+-.|..+|+..-....-   +...++   ++......-..|+.|+|.-. ..+.+..|+.|++...  
T Consensus       111 D~t~s~v~~tsng~~v~~fD~~~fs~s~~---~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~  187 (1405)
T KOG3630|consen  111 DATDSVVVSTSNGEAVYSFDLEEFSESRY---ETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ  187 (1405)
T ss_pred             CCceEEEEEecCCceEEEEehHhhhhhhh---hhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence            5443  33444556888899875321110   000111   11122233456788888643 4566778999888633  


Q ss_pred             CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-CCeEEEEecCCcEEEee
Q psy1242         481 FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-RGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       481 ~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-dg~I~lw~~~g~~l~~~  530 (540)
                      ....+.++....   ..++++|+|-|+.++.|. .|++.-|.+.+.....+
T Consensus       188 ~~~~v~s~p~t~---~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~i  235 (1405)
T KOG3630|consen  188 LAQNVTSFPVTN---SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEI  235 (1405)
T ss_pred             hhhhhcccCccc---ceeeEEeccccceeeEecCCCeEEEeecccceeecc
Confidence            333333433322   478999999999999985 58999998887755544

>PRK13684 Ycf48-like protein; Provisional

Probab=81.92  E-value=64  Score=32.94  Aligned_cols=156  Identities=8%  Similarity=-0.066  Sum_probs=84.4

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...++.+.+++.. ++.| ..|.+..-.-..++....+.              .+-...++++.+.+    +++.++.| 
T Consensus       174 ~~~~i~~~~~g~~-v~~g-~~G~i~~s~~~gg~tW~~~~--------------~~~~~~l~~i~~~~----~g~~~~vg-  232 (334)
T PRK13684        174 VVRNLRRSPDGKY-VAVS-SRGNFYSTWEPGQTAWTPHQ--------------RNSSRRLQSMGFQP----DGNLWMLA-  232 (334)
T ss_pred             eEEEEEECCCCeE-EEEe-CCceEEEEcCCCCCeEEEee--------------CCCcccceeeeEcC----CCCEEEEe-
Confidence            3566777888863 4555 35654432112233333331              23345788999998    78766654 


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCC-CC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSG-FA  495 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~-~~  495 (540)
                      ..|.+++=..+.+.        ..+.+..- ..-...+..+.+.+++..++. +.+|.+..-...|+.-.....+.. ..
T Consensus       233 ~~G~~~~~s~d~G~--------sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~S~d~G~tW~~~~~~~~~~~  303 (334)
T PRK13684        233 RGGQIRFNDPDDLE--------SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLVSKDGGKTWEKDPVGEEVPS  303 (334)
T ss_pred             cCCEEEEccCCCCC--------ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEEeCCCCCCCeECCcCCCCCc
Confidence            46766532222211        01111100 011235778889988776554 457766543333443333322111 01


Q ss_pred             CceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         496 SPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      ....+.|..+++.+++|..|.|.-|+..
T Consensus       304 ~~~~~~~~~~~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        304 NFYKIVFLDPEKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             ceEEEEEeCCCceEEECCCceEEEecCC
Confidence            4678888888889999999999887654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.36  E-value=68  Score=32.90  Aligned_cols=147  Identities=13%  Similarity=0.020  Sum_probs=82.0

Q ss_pred             EEEEEEecCCCE-EEEEEecCC---cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec-cCccCCCcEE
Q psy1242         339 HNCFVTTVDSRF-LLACGFWDN---SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS-ECNITADCFI  413 (540)
Q Consensus       339 ~~~~~~spdg~~-llasgs~Dg---sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s-p~~~~dg~~l  413 (540)
                      ...+.|+++++. ++..-..+.   .+.+.|..+++....++...           .+.-+.-....+. +.   ++.+|
T Consensus       186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~-----------~~Wv~~~~~~~~~~~~---~~~~l  251 (353)
T PF00930_consen  186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS-----------DGWVDVYDPPHFLGPD---GNEFL  251 (353)
T ss_dssp             EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES-----------SSSSSSSSEEEE-TTT---SSEEE
T ss_pred             cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC-----------CcceeeecccccccCC---CCEEE
Confidence            566778888883 333333333   35556776665543331111           1222223344544 51   44556


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEE-EEEcCCCCEEE-EEeCCC--cEEEE--eCC-CcEEE
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTS-VAISAELGLVV-SGSQLG--PVLVH--TTF-GDLLR  486 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-v~~spdg~~la-sgs~Dg--~v~iw--~~~-g~~~~  486 (540)
                      .....||--.|+-++...          .....++...-.|+. +.++++++.|. ++..++  .-.+|  ... +..+.
T Consensus       252 ~~s~~~G~~hly~~~~~~----------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~  321 (353)
T PF00930_consen  252 WISERDGYRHLYLYDLDG----------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK  321 (353)
T ss_dssp             EEEETTSSEEEEEEETTS----------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred             EEEEcCCCcEEEEEcccc----------cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence            666688877777665422          234566666667755 67888877554 555433  33454  345 66777


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                      .+....+.  -..+.|||+|++++.
T Consensus       322 ~LT~~~~~--~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  322 CLTCEDGD--HYSASFSPDGKYYVD  344 (353)
T ss_dssp             ESSTTSST--TEEEEE-TTSSEEEE
T ss_pred             eccCCCCC--ceEEEECCCCCEEEE
Confidence            78766652  258999999998875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.10  E-value=77  Score=33.31  Aligned_cols=114  Identities=10%  Similarity=-0.071  Sum_probs=67.1

Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeC
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG--HEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~  471 (540)
                      ...++.+.+.+    ++..++++ .+|.+. |........      .......+.-  -...+..+.+.+++..+++| .
T Consensus       280 ~~~l~~v~~~~----dg~l~l~g-~~G~l~-~S~d~G~~~------~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~  346 (398)
T PLN00033        280 ARRIQNMGWRA----DGGLWLLT-RGGGLY-VSKGTGLTE------EDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-G  346 (398)
T ss_pred             ccceeeeeEcC----CCCEEEEe-CCceEE-EecCCCCcc------cccceeecccCCCCcceEEEEEcCCCcEEEEE-C
Confidence            45688899988    88777655 556654 332221100      0001122211  12358889998887765555 5


Q ss_pred             CCcEEEEeCCCcEEEEecCCC-CCCCceEEEEeeCCCEEEEecCCeEEEE
Q psy1242         472 LGPVLVHTTFGDLLRSLDPPS-GFASPESVVMSREGVIVVNYERGHIAAF  520 (540)
Q Consensus       472 Dg~v~iw~~~g~~~~~l~~~~-~~~~v~~l~fspdg~~l~s~~dg~I~lw  520 (540)
                      .|.+......|+.-...+... -....+.+.|.++++-.++|.+|.|.-|
T Consensus       347 ~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        347 SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            787777655555433332111 1115689999999999999999987655

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.63  E-value=45  Score=35.03  Aligned_cols=74  Identities=16%  Similarity=0.028  Sum_probs=48.0

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCc-----EEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCc
Q psy1242         451 EQPVTSVAISAELGLVVSGSQLGPVLVHTTFGD-----LLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  525 (540)
Q Consensus       451 ~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~-----~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~  525 (540)
                      ...++.+.+.+++.+++++ .+|.+.+-...|+     ....+........+..+.|.+++..+++|..|.+....-.|+
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~  358 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGK  358 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCc
Confidence            4567889999998877665 5677655444443     223232221212478899999999999998887766544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	540
1t77_A	414	Crystal Structure Of The Ph-Beach Domains Of Human		7e-36
1mi1_A	414	Crystal Structure Of The Ph-Beach Domain Of Human N		5e-33

>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414

Iteration: 1
 Score =  148 bits (374), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 64/96 (66%), Positives = 78/96 (81%)
Query: 15  FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
           F Y + +  I GR+YNDLNQYPVFPWV+TNY+S+ELDL+L TN+RDLSKPIGALNP R A
Sbjct: 148 FEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAA 207
Query: 75  YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRV 110
           +F ERY SWE + +  FHYGTHYST  +VL WL+R+
Sbjct: 208 FFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRI 243

>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 73/96 (76%)
Query: 15  FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
           F Y   +  I GRTYNDLNQYPVFPWVLTNY+S+ELDL+L  N+RDLSKPIGALNP R  
Sbjct: 148 FEYLXFLNTIAGRTYNDLNQYPVFPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAV 207
Query: 75  YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRV 110
           ++ ERY +WE +   P+HY THYST    L+WLVR+
Sbjct: 208 FYAERYETWEDDQSPPYHYNTHYSTATSTLSWLVRI 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	540
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.95
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.94
2pm7_B	297	Protein transport protein SEC13, protein transport	99.94
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.93
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.92
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.92
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.92
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.91
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.91
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.91
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.9
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.9
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.9
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.9
2pm7_B	297	Protein transport protein SEC13, protein transport	99.9
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.89
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.89
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.89
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.89
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.89
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.88
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.88
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.88
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.87
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.87
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.86
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.86
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.86
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.86
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.86
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.85
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.85
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.85
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.85
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.84
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.84
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.84
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.83
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.82
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.82
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.81
3jro_A	753	Fusion protein of protein transport protein SEC13	99.81
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.8
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.8
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.8
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.79
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.79
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.78
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.78
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.69
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.68
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.63
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.62
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.61
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.59
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.59
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.59
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.59
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.58
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.56
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.55
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.55
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.54
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.54
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.52
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.47
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.46
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.46
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.44
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.44
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.43
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.42
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.42
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.42
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.42
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.39
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.39
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.37
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.34
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.32
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.3
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.26
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.22
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.21
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.18
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.16
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.12
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.11
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.08
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.07
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.07
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.06
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.03
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.03
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.0
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.99
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.97
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.95
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.95
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.92
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.91
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.89
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.88
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.86
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.83
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.82
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.81
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.8
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.69
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.68
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.65
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.57
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.44
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.15
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.12
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.09
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.02
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.98
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.98
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.98
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.86
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.84
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.78
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.69
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.61
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.61
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.57
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.55
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.5
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.47
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.4
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.35
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.33
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.32
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.3
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.3
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.18
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.16
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.14
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.13
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.13
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.1
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.04
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.03
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.98
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.96
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.94
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.85
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.71
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.64
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.62
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.62
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.53
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.47
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.46
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.28
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.17
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.0
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.88
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.71
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.48
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.48
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.4
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.31
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.11
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.08
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.07
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.04
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.03
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.02
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.91
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.28
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.15
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	94.14
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.83
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.55
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.31
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.28
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.45
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.19
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.68
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	91.65
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.27
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	91.0
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.92
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.63
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.02
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	86.77
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	86.03
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	85.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	85.65
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	85.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	84.97
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	84.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	83.74
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	83.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	83.03
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	81.92

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A

Probab=100.00  E-value=2.8e-69  Score=544.46  Aligned_cols=218  Identities=38%  Similarity=0.620  Sum_probs=189.1

Q ss_pred             cccccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccCcccccChhhHHHHHHHHh
Q psy1242           2 TYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERYN   81 (540)
Q Consensus         2 ~~~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~~~~~~~~~~~~~~~~~~~   81 (540)
                      ++|++|++|+||||||||.||.+|||||||++|||||||||+||+|++|||+|+++||||+|||||||++|++.+++||+
T Consensus       135 ~~t~~W~~g~iSNFeYLm~LN~~aGRs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~  214 (414)
T 1t77_A          135 NMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYE  214 (414)
T ss_dssp             SHHHHHHTTSSCHHHHHHHHHHHHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCccHHHHHHHHHHHcCCCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--ccccccccC--------------------
Q psy1242          82 SWEHENIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYAE--------------------  128 (540)
Q Consensus        82 ~~~~~~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~~--------------------  128 (540)
                      +++++.+++||||+|||++++|++||+|+| |         |+|| |||  +||+++|++                    
T Consensus       215 ~~~~~~~~~f~ygshyS~~~~V~~yL~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~~~~~d~kElIPEFf~~Pe  294 (414)
T 1t77_A          215 SWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPE  294 (414)
T ss_dssp             HCCCSSSCCCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHHHCTTCCCCBCGGGGTCGG
T ss_pred             hhcccCCCCcccCCCCCCHHHHHHHHhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHhccCCCccccCchhhcChH
Confidence            999888999999999999999999999999 7         8999 999  999999975                    


Q ss_pred             -------------CCCCCCCCCceecCCccCCcCccCCCccchhhhcCCCccc---cCCCCCCCCCC-cchhhhhhhhcc
Q psy1242         129 -------------TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK---LRVRPITTPLY-PRDIWVTISVRS  191 (540)
Q Consensus       129 -------------~~~~~~~~~~v~lp~w~~~~~~f~~~~~~r~~Le~~fg~~---~~~~~~~~~~~-~~~a~~~~~i~~  191 (540)
                                   ++|+.++|  |+|||||++|++||  ++||+||||++-.+   .+||.|++.++ +++| +++  .|
T Consensus       295 ~l~N~n~~~lG~~~~g~~v~D--V~LP~Wa~sp~~FI--~~~R~aLES~~VS~~Lh~WIDLiFGykq~G~~A-v~a--~N  367 (414)
T 1t77_A          295 MFVNFNNYNLGVMDDGTVVSD--VELPPWAKTSEEFV--HINRLALESEFVSCQLHQWIDLIFGYKQQGPEA-VRA--LN  367 (414)
T ss_dssp             GGSCTTCCCCCBCTTSCBCSS--CBCCTTCSSHHHHH--HHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHH-HHH--TC
T ss_pred             hhccccCCccccccCCCCCCc--eeCCCCCCCHHHHH--HHHHHHHcChHhhhhhhhhhhhhcCcccCCHHH-Hhc--CC
Confidence                         56788999  99999999999999  99999999983111   23334555444 3444 433  36


Q ss_pred             cccchh---hhhhhhhhccc-------cccccccccCcc-cccccC
Q psy1242         192 YAYDIT---VLSLRWIVDSC-------WRAVSGITASEC-SLRIMS  226 (540)
Q Consensus       192 ~~y~~~---~~~l~~~~~~~-------~~~~fGQ~P~Q~-~~~~~~  226 (540)
                      ++|+++   ++|++.|.|+.       ++++|||||.|| .+||+.
T Consensus       368 vf~~ltY~~~vd~~~i~d~~~~~a~~~~i~~fGQ~P~QLF~~pHP~  413 (414)
T 1t77_A          368 VFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPP  413 (414)
T ss_dssp             CBCGGGSTTSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCCCC
T ss_pred             ccccceecCcccccccCCHHHHHHHHHHHHHcCCChhhhhcCCCCC
Confidence            666554   67888777754       448899999998 466654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=8.9e-29  Score=259.03  Aligned_cols=244  Identities=14%  Similarity=0.167  Sum_probs=196.5

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc----Cc
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF----SQ  333 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~----~~  333 (540)
                      .+.++...++|++.|++|++||..++.... ..+|.+.|.    .+.|++++.++++|+.+... ..+.+....    -.
T Consensus       115 ~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~----~v~~~~~~~~l~sgs~D~~i-~iwd~~~~~~~~~~~  189 (410)
T 1vyh_C          115 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ----DISFDHSGKLLASCSADMTI-KLWDFQGFECIRTMH  189 (410)
T ss_dssp             EECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE----EEEECTTSSEEEEEETTSCC-CEEETTSSCEEECCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE----EEEEcCCCCEEEEEeCCCeE-EEEeCCCCceeEEEc
Confidence            333344459999999999999998766443 345665443    57788999888877655443 222221100    01


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      .....+.+++|+|+++. |++|+.|++|++||+++++++..+               .+|...|.+++++|    +|.+|
T Consensus       190 ~h~~~V~~v~~~p~~~~-l~s~s~D~~i~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~----~g~~l  249 (410)
T 1vyh_C          190 GHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF---------------TGHREWVRMVRPNQ----DGTLI  249 (410)
T ss_dssp             CCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE---------------ECCSSCEEEEEECT----TSSEE
T ss_pred             CCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCCCcEEEEE---------------eCCCccEEEEEECC----CCCEE
Confidence            11223788899999995 799999999999999999998888               88999999999999    99999


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--------------------CCEEEEEeCCC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--------------------LGLVVSGSQLG  473 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--------------------g~~lasgs~Dg  473 (540)
                      ++|+.|++|++||+..           .++...+.+|...|.+++|+|+                    +.+|++|+.||
T Consensus       250 ~s~s~D~~v~vwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~  318 (410)
T 1vyh_C          250 ASCSNDQTVRVWVVAT-----------KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  318 (410)
T ss_dssp             EEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             EEEcCCCeEEEEECCC-----------CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence            9999999999999876           4577889999999999999996                    67899999999


Q ss_pred             cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         474 PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       474 ~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      +|++|+. +++++.++.+|..  .|.+++|+|+|++|++ +.|+.|++||+. ++.+..+. |.+.|++++
T Consensus       319 ~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~  387 (410)
T 1vyh_C          319 TIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD  387 (410)
T ss_dssp             EEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred             eEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence            9999986 7899999999988  7899999999999988 568999999987 67777775 888888764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.4e-28  Score=249.06  Aligned_cols=232  Identities=15%  Similarity=0.146  Sum_probs=185.5

Q ss_pred             cccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc
Q psy1242         253 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF  331 (540)
Q Consensus       253 ~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~  331 (540)
                      .++..+.+.++...++|++.|++|++||..++...... .+..    ....+.|++|+..+++|+.+... ..+.+....
T Consensus        81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~g~~dg~v-~i~~~~~~~  155 (321)
T 3ow8_A           81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV----DAWTLAFSPDSQYLATGTHVGKV-NIFGVESGK  155 (321)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT----CCCCEEECTTSSEEEEECTTSEE-EEEETTTCS
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc----cEEEEEECCCCCEEEEEcCCCcE-EEEEcCCCc
Confidence            33444555566667999999999999999876543322 2322    23357899999888877543322 112221110


Q ss_pred             C----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         332 S----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       332 ~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                      .    ....-.+.+++|+|+|++ |++|+.||.|++||+++++.+..+               .+|...|++++|+|   
T Consensus       156 ~~~~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~~~---------------~~h~~~v~~l~~sp---  216 (321)
T 3ow8_A          156 KEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTL---------------EGHAMPIRSLTFSP---  216 (321)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCCCEEEECT---
T ss_pred             eeEEecCCCceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEE---------------cccCCceeEEEEcC---
Confidence            0    001113678899999995 799999999999999999998888               88999999999999   


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242         408 TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR  486 (540)
Q Consensus       408 ~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~  486 (540)
                       ++++|++|+.|++|++||++.           ..+...+.+|...|.+++|+|++.+|++|+.||+|++|+. +++++.
T Consensus       217 -d~~~l~s~s~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  284 (321)
T 3ow8_A          217 -DSQLLVTASDDGYIKIYDVQH-----------ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH  284 (321)
T ss_dssp             -TSCEEEEECTTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             -CCCEEEEEcCCCeEEEEECCC-----------cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence             999999999999999999876           4567889999999999999999999999999999999976 789999


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~  522 (540)
                      ++.+|..  .|.+++|+|+|+.|++ +.|+.|++||.
T Consensus       285 ~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          285 TFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EECCCSS--CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9999988  7899999999999888 57899999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=2.6e-28  Score=244.70  Aligned_cols=254  Identities=15%  Similarity=0.126  Sum_probs=193.0

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCe
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPIL  311 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l  311 (540)
                      .+.+.+..+.|+|+++.                 ++|++.|++|++||..++...... .|...    ...+.|++|+.+
T Consensus        11 ~h~~~V~~~~fsp~~~~-----------------l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~   69 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPW-----------------VLTTLYSGRVELWNYETQVEVRSIQVTETP----VRAGKFIARKNW   69 (304)
T ss_dssp             EECSCEEEEEECSSSSE-----------------EEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTE
T ss_pred             CCCCceEEEEECCCCCE-----------------EEEEcCCCcEEEEECCCCceeEEeeccCCc----EEEEEEeCCCCE
Confidence            34556666777776665                 999999999999999876543322 34432    235678888888


Q ss_pred             eeccCCCCCCccccccCCCc-C---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeee
Q psy1242         312 THPTSNNNAPVPKRHLGDNF-S---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRI  386 (540)
Q Consensus       312 ~~~g~~~~~~~~~~~~~~~~-~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~  386 (540)
                      +++|+.+... ..+.+.... .   ....-.+.+++|+|+++. |++|+.|++|++||++++. ....+           
T Consensus        70 l~s~s~d~~i-~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~~~-----------  136 (304)
T 2ynn_A           70 IIVGSDDFRI-RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTF-----------  136 (304)
T ss_dssp             EEEEETTSEE-EEEETTTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTEEEEEE-----------
T ss_pred             EEEECCCCEE-EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcchhhhh-----------
Confidence            8777544332 222221110 0   011123788899999995 7999999999999998874 44555           


Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcC--CC
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISA--EL  463 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~sp--dg  463 (540)
                          .+|...|++++|+|.   ++..|++|+.|++|++||++..           .+...+ .+|...+.+++++|  ++
T Consensus       137 ----~~h~~~v~~v~~~p~---~~~~l~sgs~D~~v~iwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~  198 (304)
T 2ynn_A          137 ----EGHEHFVMCVAFNPK---DPSTFASGCLDRTVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDK  198 (304)
T ss_dssp             ----CCCCSCEEEEEECTT---CTTEEEEEETTSEEEEEETTCS-----------SCSEEEECCCTTCEEEEEECCSTTC
T ss_pred             ----cccCCcEEEEEECCC---CCCEEEEEeCCCeEEEEECCCC-----------CccceeccCCcCcEEEEEEEEcCCC
Confidence                789999999999983   5789999999999999998753           233333 56778899999987  67


Q ss_pred             CEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         464 GLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       464 ~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                      .+|++|+.||+|++|+. +++++.++.+|..  .|.+++|+|++.+|+++ .||+|++||++ ++.+..+. +.+.+.|+
T Consensus       199 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~  276 (304)
T 2ynn_A          199 PYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI  276 (304)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred             CEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEE
Confidence            89999999999999976 7889999999988  78999999999999984 68999999987 78887776 66777765


Q ss_pred             C
Q psy1242         540 A  540 (540)
Q Consensus       540 a  540 (540)
                      +
T Consensus       277 ~  277 (304)
T 2ynn_A          277 A  277 (304)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=7.2e-29  Score=251.16  Aligned_cols=257  Identities=15%  Similarity=0.148  Sum_probs=198.3

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccCCC
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTLDP  309 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~D~  309 (540)
                      .|++.+..+.+.++.+.             +...++|+|.|++|++|+.......   ...+|...|.    .+.+++++
T Consensus        30 ~H~~~V~~v~~~~~~~~-------------~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~----~~~~~~~~   92 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKE-------------NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV----SVDISHTL   92 (321)
T ss_dssp             SSSSCEEEEEEC--------------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE----EEEECSSS
T ss_pred             cCCCcEEEEEEecCCCC-------------CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE----EEEECCCC
Confidence            45667777777654321             2345999999999999998654321   2345654443    46678888


Q ss_pred             CeeeccCCCCCCccccccCCCcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeee
Q psy1242         310 ILTHPTSNNNAPVPKRHLGDNFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSR  385 (540)
Q Consensus       310 ~l~~~g~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~  385 (540)
                      .++++++.+... ..+.+.....    ......+.+++|+|+++. |++|+.|+.|++|++++++....+          
T Consensus        93 ~~l~s~s~D~~i-~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~g~~dg~v~i~~~~~~~~~~~~----------  160 (321)
T 3ow8_A           93 PIAASSSLDAHI-RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVESGKKEYSL----------  160 (321)
T ss_dssp             SEEEEEETTSEE-EEEETTTTEEEEEEECCTTCCCCEEECTTSSE-EEEECTTSEEEEEETTTCSEEEEE----------
T ss_pred             CEEEEEeCCCcE-EEEECCCCCEEEEEeCCCccEEEEEECCCCCE-EEEEcCCCcEEEEEcCCCceeEEe----------
Confidence            777776543332 2222221100    001112557888999995 799999999999999999888777          


Q ss_pred             eEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE
Q psy1242         386 IVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL  465 (540)
Q Consensus       386 ~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~  465 (540)
                           ..|...|.+++|+|    +|++|++|+.|++|++||+++           ++++..+.+|...|.+++|+|++++
T Consensus       161 -----~~~~~~v~~~~~sp----dg~~lasg~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~l~~spd~~~  220 (321)
T 3ow8_A          161 -----DTRGKFILSIAYSP----DGKYLASGAIDGIINIFDIAT-----------GKLLHTLEGHAMPIRSLTFSPDSQL  220 (321)
T ss_dssp             -----ECSSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCCCEEEECTTSCE
T ss_pred             -----cCCCceEEEEEECC----CCCEEEEEcCCCeEEEEECCC-----------CcEEEEEcccCCceeEEEEcCCCCE
Confidence                 78889999999999    999999999999999999876           4678889999999999999999999


Q ss_pred             EEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         466 VVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       466 lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      |++|+.||+|++|+. +++++..+.+|..  .|.+++|+|+|.+|++ +.|++|++||+. ++.+..+. |.+.|.+++
T Consensus       221 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~  297 (321)
T 3ow8_A          221 LVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK  297 (321)
T ss_dssp             EEEECTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE
Confidence            999999999999976 7888999999988  7899999999999998 568999999997 77777764 888888764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=6.1e-28  Score=245.90  Aligned_cols=245  Identities=14%  Similarity=0.151  Sum_probs=189.7

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-----
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS-----  332 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~-----  332 (540)
                      .+.+++..++|+|.|++|++||..++..... ..|...+    ..+.+++|+.++++|+.+... ..+.+.....     
T Consensus        62 ~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~s~~~d~~v-~iw~~~~~~~~~~~~  136 (340)
T 1got_B           62 HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWV----MTCAYAPSGNYVACGGLDNIC-SIYNLKTREGNVRVS  136 (340)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCE----EEEEECTTSSEEEEEETTCEE-EEEETTTCSBSCEEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccE----EEEEECCCCCEEEEEeCCCeE-EEEECccCCCcceeE
Confidence            3344444599999999999999876654332 2344322    356789999888877544322 2222211100     


Q ss_pred             ---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         333 ---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       333 ---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                         ......+.|+.|++++.  +++|+.|++|++||+++++.+..+               .+|.+.|++++|+|    +
T Consensus       137 ~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~----~  195 (340)
T 1got_B          137 RELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTF---------------TGHTGDVMSLSLAP----D  195 (340)
T ss_dssp             EEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECT----T
T ss_pred             EEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEE---------------cCCCCceEEEEECC----C
Confidence               00112367888888886  588899999999999999988888               88999999999999    9


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      +.+|++|+.|++|++||++.           +.++..+.+|...|++++|+|++.+|++|+.||+|++|+. +++.+..+
T Consensus       196 ~~~l~sg~~d~~v~~wd~~~-----------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  264 (340)
T 1got_B          196 TRLFVSGACDASAKLWDVRE-----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTT-----------CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCC-----------CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            99999999999999999876           4578889999999999999999999999999999999986 66777777


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      ..+.....|.+++|+|+|++|++| .|+.|++||+. ++.+..+. |.+.|.||+
T Consensus       265 ~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  319 (340)
T 1got_B          265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG  319 (340)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence            644322268999999999999985 68999999986 77777775 899998874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=1.2e-27  Score=245.58  Aligned_cols=256  Identities=13%  Similarity=0.089  Sum_probs=195.4

Q ss_pred             ccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCee
Q psy1242         234 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILT  312 (540)
Q Consensus       234 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~  312 (540)
                      |...+..+.|++++..                 ++|+|.|++|++||..+....... .|..    ....+.+++|+..+
T Consensus        63 H~~~V~~~~~s~d~~~-----------------l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l  121 (354)
T 2pbi_B           63 HGNKVLCMDWCKDKRR-----------------IVSSSQDGKVIVWDSFTTNKEHAVTMPCT----WVMACAYAPSGCAI  121 (354)
T ss_dssp             CSSCEEEEEECTTSSE-----------------EEEEETTSEEEEEETTTCCEEEEEECSSS----CCCEEEECTTSSEE
T ss_pred             CCCeEEEEEECCCCCE-----------------EEEEeCCCeEEEEECCCCCcceEEecCCC----CEEEEEECCCCCEE
Confidence            4455555666555544                 999999999999998765533222 2332    23457899999888


Q ss_pred             eccCCCCCCccccccCCC-----cCc-----ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccccee
Q psy1242         313 HPTSNNNAPVPKRHLGDN-----FSQ-----KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVV  382 (540)
Q Consensus       313 ~~g~~~~~~~~~~~~~~~-----~~~-----~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v  382 (540)
                      ++|+.+... ..+.+...     ...     ...-.+.+++|+|++.. |++|+.|++|++||+++++.+..+       
T Consensus       122 asg~~d~~i-~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~-------  192 (354)
T 2pbi_B          122 ACGGLDNKC-SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSF-------  192 (354)
T ss_dssp             EEESTTSEE-EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE-------
T ss_pred             EEeeCCCCE-EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEE-------
Confidence            877544322 11111100     000     01123678889999996 789999999999999999998888       


Q ss_pred             eeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242         383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE  462 (540)
Q Consensus       383 ~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd  462 (540)
                              .+|...|.+++++|.  .+|.+|++|+.|++|++||+++           ++++..+.+|...|++++|+|+
T Consensus       193 --------~~h~~~v~~~~~~~~--~~g~~l~sgs~Dg~v~~wd~~~-----------~~~~~~~~~h~~~v~~v~~~p~  251 (354)
T 2pbi_B          193 --------HGHGADVLCLDLAPS--ETGNTFVSGGCDKKAMVWDMRS-----------GQCVQAFETHESDVNSVRYYPS  251 (354)
T ss_dssp             --------ECCSSCEEEEEECCC--SSCCEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTT
T ss_pred             --------cCCCCCeEEEEEEeC--CCCCEEEEEeCCCeEEEEECCC-----------CcEEEEecCCCCCeEEEEEeCC
Confidence                    889999999999872  1468999999999999999876           4678889999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCccee
Q psy1242         463 LGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQK  538 (540)
Q Consensus       463 g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~  538 (540)
                      +.+|++|+.|++|++|+. +++.+..+..+.....+.+++|+|+|++|+++ .|+.|++||+. |+.+..+. |.+.|++
T Consensus       252 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~  331 (354)
T 2pbi_B          252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST  331 (354)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence            999999999999999987 56666666654433367899999999999985 68999999985 88887775 8899988


Q ss_pred             cC
Q psy1242         539 TA  540 (540)
Q Consensus       539 va  540 (540)
                      ++
T Consensus       332 l~  333 (354)
T 2pbi_B          332 LR  333 (354)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=4.6e-28  Score=247.94  Aligned_cols=250  Identities=16%  Similarity=0.154  Sum_probs=177.9

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCC--------cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAA--------SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH  326 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~--------~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~  326 (540)
                      +..+.+.+++..++++| |.++|+||.....        .................+.|++|+.+++++.  +.....+.
T Consensus        33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~--dg~v~lWd  109 (344)
T 4gqb_B           33 LEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASD--SGAVELWE  109 (344)
T ss_dssp             EEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEET--TSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEEC--CCEEEEEe
Confidence            34444555555588877 7788888732100        0000000000012234678899987775542  22333333


Q ss_pred             cCCCcC--------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242         327 LGDNFS--------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT  398 (540)
Q Consensus       327 ~~~~~~--------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt  398 (540)
                      +.....        ....-.+.+++|+|+|++ |++|+.|++|++||+++++++..+               .+|.+.|+
T Consensus       110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-l~sgs~d~~i~iwd~~~~~~~~~~---------------~~h~~~V~  173 (344)
T 4gqb_B          110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-AVSGSKDICIKVWDLAQQVVLSSY---------------RAHAAQVT  173 (344)
T ss_dssp             ECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEE
T ss_pred             ccCCCceeEeeccccCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEEE---------------cCcCCceE
Confidence            322110        011223788999999995 799999999999999999999888               89999999


Q ss_pred             EEEeccCccCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCC-CCEEEEEeCCCc
Q psy1242         399 CLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAE-LGLVVSGSQLGP  474 (540)
Q Consensus       399 ~l~~sp~~~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spd-g~~lasgs~Dg~  474 (540)
                      +++|+|    ++ ..|++|+.|++|++||++.           +++...+  ..|...+.+++|+|+ +.++++|+.||+
T Consensus       174 ~~~~~~----~~~~~l~s~s~D~~v~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~  238 (344)
T 4gqb_B          174 CVAASP----HKDSVFLSCSEDNRILLWDTRC-----------PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT  238 (344)
T ss_dssp             EEEECS----SCTTEEEEEETTSCEEEEETTS-----------SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred             EEEecC----CCCCceeeeccccccccccccc-----------cceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence            999999    66 5789999999999999876           3445555  345668999999995 568899999999


Q ss_pred             EEEEeC-CCcEEEEecCCCCCCCceEEEEeeCC-CEEEE-ecCCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242         475 VLVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQKTA  540 (540)
Q Consensus       475 v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg-~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~~va  540 (540)
                      |++|+. +++++.++.+|..  .|.+++|+|+| ++|++ +.|++|++||++ ++++....|.+.|++|+
T Consensus       239 v~~wd~~~~~~~~~~~~h~~--~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~  306 (344)
T 4gqb_B          239 VSLVDTKSTSCVLSSAVHSQ--CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDAT  306 (344)
T ss_dssp             EEEEESCC--CCEEEECCSS--CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCC--CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEE
Confidence            999976 7889999999998  78999999998 57777 568999999998 55555556999998874

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=1.1e-27  Score=245.05  Aligned_cols=226  Identities=12%  Similarity=0.032  Sum_probs=171.9

Q ss_pred             EEEccCcceEEEEcCCCCCcccC-----CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-----cCccee
Q psy1242         267 TVTANHQFAINRWNPDYAASIQS-----PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-----FSQKLR  336 (540)
Q Consensus       267 lvs~s~D~tv~~W~~~~~~~~~~-----~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-----~~~~~~  336 (540)
                      +++++.|++|++||..+++....     .+|.+.|.    .+.|++|+.++++|+.+... ..+.+...     +. ...
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~----~v~~spdg~~l~sgs~d~~i-~iwd~~~~~~~~~~~-~h~  169 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS----TVSVLSSGTQAVSGSKDICI-KVWDLAQQVVLSSYR-AHA  169 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE----EEEECTTSSEEEEEETTSCE-EEEETTTTEEEEEEC-CCS
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE----EEEECCCCCEEEEEeCCCeE-EEEECCCCcEEEEEc-CcC
Confidence            67899999999999987664322     25664443    57899999888887654433 22222211     11 112


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      -.+.+++|++++..++++|+.|++|++||+++++....+..             ..|...+++++|+|.   ++++|++|
T Consensus       170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------~~~~~~~~~~~~~p~---~~~~l~sg  233 (344)
T 4gqb_B          170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC-------------SAPGYLPTSLAWHPQ---QSEVFVFG  233 (344)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----------------CCCEEEEEECSS---CTTEEEEE
T ss_pred             CceEEEEecCCCCCceeeeccccccccccccccceeeeeec-------------ceeeccceeeeecCC---CCcceEEe
Confidence            23788899999977789999999999999999988876621             346677999999994   56789999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCcEEEEecCCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFA  495 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~  495 (540)
                      +.|++|+|||++.           ++++..+.+|...|++++|+|++ ++|++|+.||+|+||+.....+..+.+|.+  
T Consensus       234 ~~dg~v~~wd~~~-----------~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~--  300 (344)
T 4gqb_B          234 DENGTVSLVDTKS-----------TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRD--  300 (344)
T ss_dssp             ETTSEEEEEESCC-------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSS--
T ss_pred             ccCCcEEEEECCC-----------CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCC--
Confidence            9999999999876           46788999999999999999998 589999999999999875444556788988  


Q ss_pred             CceEEEEeeCCC-EEEE-ecCCeEEEEecCCcEE
Q psy1242         496 SPESVVMSREGV-IVVN-YERGHIAAFTMNGNRL  527 (540)
Q Consensus       496 ~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g~~l  527 (540)
                      .|.+++|+|+|+ +|++ |.|++|++|++..+.+
T Consensus       301 ~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             CEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            789999999987 5556 5699999999886544

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=4e-27  Score=259.22  Aligned_cols=248  Identities=14%  Similarity=0.139  Sum_probs=185.5

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccCCCCeeeccCCCCC---CccccccC
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA---PVPKRHLG  328 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~---~~~~~~~~  328 (540)
                      ++.+.+.+++..+||++.|++|++||...+...   ...+|.+.|    ..+.|++|+..+++++....   ....+..+
T Consensus        62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v----~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~  137 (611)
T 1nr0_A           62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV----KDISWDSESKRIAAVGEGRERFGHVFLFDTG  137 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE----EEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred             eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCce----EEEEECCCCCEEEEEECCCCceeEEEEeeCC
Confidence            344445555556999999999999998643321   223455433    36789999987765543221   11112111


Q ss_pred             C---CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242         329 D---NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC  405 (540)
Q Consensus       329 ~---~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~  405 (540)
                      .   .+. ...-.+.+++|+|++..+|++|+.|++|++||..+++....+               .+|.+.|++++|+| 
T Consensus       138 ~~~~~l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l---------------~~H~~~V~~v~fsp-  200 (611)
T 1nr0_A          138 TSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF---------------GEHTKFVHSVRYNP-  200 (611)
T ss_dssp             CBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE---------------CCCSSCEEEEEECT-
T ss_pred             CCcceec-CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee---------------ccccCceEEEEECC-
Confidence            1   111 112237888999999866899999999999999988888777               89999999999999 


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT-------GHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                         +|++|+||+.|++|++||+..           ++++..+.       +|.+.|.+++|+|++++|++|+.|++|++|
T Consensus       201 ---dg~~las~s~D~~i~lwd~~~-----------g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          201 ---DGSLFASTGGDGTIVLYNGVD-----------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW  266 (611)
T ss_dssp             ---TSSEEEEEETTSCEEEEETTT-----------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ---CCCEEEEEECCCcEEEEECCC-----------CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence               999999999999999999865           34555553       799999999999999999999999999999


Q ss_pred             eC-CCcEEE-------------------------------------------EecCCCCCCCceEEEEeeCCCEEEEe-c
Q psy1242         479 TT-FGDLLR-------------------------------------------SLDPPSGFASPESVVMSREGVIVVNY-E  513 (540)
Q Consensus       479 ~~-~g~~~~-------------------------------------------~l~~~~~~~~v~~l~fspdg~~l~s~-~  513 (540)
                      +. +++++.                                           .+.+|..  .|.+++|+|+|++|+++ .
T Consensus       267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~--~v~~l~~spdg~~l~s~s~  344 (611)
T 1nr0_A          267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK--AITALSSSADGKTLFSADA  344 (611)
T ss_dssp             ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEET
T ss_pred             eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC--CEEEEEEeCCCCEEEEEeC
Confidence            76 555543                                           3345666  78999999999999984 6


Q ss_pred             CCeEEEEecC-CcEEEee--ecCCcceec
Q psy1242         514 RGHIAAFTMN-GNRLRHE--SHNDNLQKT  539 (540)
Q Consensus       514 dg~I~lw~~~-g~~l~~~--~~~~~V~~v  539 (540)
                      |++|++|++. |+.+..+  .|...|.++
T Consensus       345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~  373 (611)
T 1nr0_A          345 EGHINSWDISTGISNRVFPDVHATMITGI  373 (611)
T ss_dssp             TSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred             CCcEEEEECCCCceeeecccCCcceEEEE
Confidence            8999999987 5555543  266666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=1.2e-27  Score=245.78  Aligned_cols=261  Identities=15%  Similarity=0.143  Sum_probs=191.0

Q ss_pred             cCCCCCeeeecccceeeecCCcEEEEEccC------cceEEEEcCCCCCcccC-----CCCcCCCCCCCCCccccCCCCe
Q psy1242         243 FPSNSPICHVTANTYVTLHMPSVVTVTANH------QFAINRWNPDYAASIQS-----PSYAETPGSPPGNLPLTLDPIL  311 (540)
Q Consensus       243 f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~------D~tv~~W~~~~~~~~~~-----~~~~~~v~~~~~~~~~s~D~~l  311 (540)
                      .+++.|.+|...+..+.+.+++..++|+|.      |++|++|+...+.....     ..|...    ...+.|++|+.+
T Consensus        33 ~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~----V~~~~~s~d~~~  108 (357)
T 4g56_B           33 RPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAG----VTDVAWVSEKGI  108 (357)
T ss_dssp             -------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSC----EEEEEEETTTEE
T ss_pred             CCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCC----EEEEEEcCCCCE
Confidence            344555566666666666677777999997      78899999866543221     234432    335789999988


Q ss_pred             eeccCCCCCCccccccCCCc--------CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee
Q psy1242         312 THPTSNNNAPVPKRHLGDNF--------SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT  383 (540)
Q Consensus       312 ~~~g~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~  383 (540)
                      ++++.+  .....+.+....        .....-.+.+++|+|+|++ |++|+.|++|++||+++++.+..+        
T Consensus       109 l~~s~d--g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~~~~--------  177 (357)
T 4g56_B          109 LVASDS--GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVLKSY--------  177 (357)
T ss_dssp             EEEETT--SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEEEEE--------
T ss_pred             EEEECC--CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEEEE--------
Confidence            776632  223333222110        0111224788999999995 799999999999999999998888        


Q ss_pred             eeeEEEeeccCcceEEEEeccCccCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242         384 SRIVQIIFGHYGVVTCLSRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE  462 (540)
Q Consensus       384 ~~~~~~l~~h~~~Vt~l~~sp~~~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd  462 (540)
                             .+|.+.|++++|+|    ++ ..+++++.|++|++||++....         .....+..|...+++++|+|+
T Consensus       178 -------~~h~~~v~~v~~s~----~~~~~~~s~~~dg~v~~wd~~~~~~---------~~~~~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          178 -------NAHSSEVNCVAACP----GKDTIFLSCGEDGRILLWDTRKPKP---------ATRIDFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             -------CCCSSCEEEEEECT----TCSSCEEEEETTSCEEECCTTSSSC---------BCBCCCTTCCSCEEEEEECTT
T ss_pred             -------cCCCCCEEEEEEcc----CCCceeeeeccCCceEEEECCCCce---------eeeeeeccccccccchhhhhc
Confidence                   88999999999999    66 4789999999999999876331         112233567788999999997


Q ss_pred             C-CEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCC-CEEEE-ecCCeEEEEecC-CcEEEeeecCCcce
Q psy1242         463 L-GLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQ  537 (540)
Q Consensus       463 g-~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg-~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~  537 (540)
                      + .+|++|+.|+.|++|+. +++++.++.+|..  .|.+++|+|++ ++|++ +.|++|++||++ ++.+..+.|.+.|+
T Consensus       238 ~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~  315 (357)
T 4g56_B          238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQ--NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVT  315 (357)
T ss_dssp             STTEEEEEESSSCEEEEESSCGGGCEEECCCSS--CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEE
T ss_pred             ccceEEEeecccceeEEECCCCcEeEEEeccce--eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEE
Confidence            5 68999999999999976 7888999999988  78999999997 57777 568999999998 77777778999999


Q ss_pred             ecC
Q psy1242         538 KTA  540 (540)
Q Consensus       538 ~va  540 (540)
                      +|+
T Consensus       316 ~va  318 (357)
T 4g56_B          316 GVA  318 (357)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=2.6e-27  Score=245.15  Aligned_cols=240  Identities=17%  Similarity=0.152  Sum_probs=180.3

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------------
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------------  329 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------------  329 (540)
                      ++..++|+|.|++|++||..++.... ...|...|    ..+.|++|+.++++|+.+... ..+.+..            
T Consensus        77 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v----~~~~~s~~g~~las~~~d~~v-~iw~~~~~~~~~~~~~~~~  151 (380)
T 3iz6_a           77 EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV----MECAFAPNGQSVACGGLDSAC-SIFNLSSQADRDGNMPVSR  151 (380)
T ss_dssp             TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTC----CCCEECTTSSEEEECCSSSCC-EEEECCCCSSCCCSSTTCC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCE----EEEEECCCCCEEEEeeCCCcE-EEEECCCCccccCCcccee
Confidence            33349999999999999987765433 23455443    356799999888887644333 1121110            


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEE-----ecccceeee--------------------
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQII-----FGHYGVVTS--------------------  384 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l-----~~~~~~v~~--------------------  384 (540)
                      .+. .....+.+++|+|++...|++|+.|++|++||+.+++.+..+     .+|...+.+                    
T Consensus       152 ~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v  230 (380)
T 3iz6_a          152 VLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV  230 (380)
T ss_dssp             BCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCE
T ss_pred             ecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeE
Confidence            011 111224566778876545799999999999999999888776     455544421                    


Q ss_pred             ---------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC----
Q psy1242         385 ---------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE----  451 (540)
Q Consensus       385 ---------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~----  451 (540)
                               ..+..+.+|.+.|++++|+|    ++++|+||+.|++|++||+++           ++++..+..+.    
T Consensus       231 ~~wd~~~~~~~~~~~~~h~~~v~~v~~~p----~~~~l~s~s~D~~i~lwd~~~-----------~~~~~~~~~~~~~~~  295 (380)
T 3iz6_a          231 RLWDLRITSRAVRTYHGHEGDINSVKFFP----DGQRFGTGSDDGTCRLFDMRT-----------GHQLQVYNREPDRND  295 (380)
T ss_dssp             EEEETTTTCCCCEEECCCSSCCCEEEECT----TSSEEEEECSSSCEEEEETTT-----------TEEEEEECCCCSSSC
T ss_pred             EEEECCCCCcceEEECCcCCCeEEEEEec----CCCeEEEEcCCCeEEEEECCC-----------CcEEEEecccccccc
Confidence                     34567789999999999999    999999999999999999886           33455554432    


Q ss_pred             ---CCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe----cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEec
Q psy1242         452 ---QPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL----DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM  522 (540)
Q Consensus       452 ---~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l----~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~  522 (540)
                         ..|++++|+|+|+++++|+.||.|++|+. +++.+..+    .+|.+  .|.+++|+|+|.+|++| .|++|++|++
T Consensus       296 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          296 NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG--RISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC--CCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC--ceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence               35899999999999999999999999976 77777777    56777  78999999999999996 5899999998


Q ss_pred             CCc
Q psy1242         523 NGN  525 (540)
Q Consensus       523 ~g~  525 (540)
                      .+.
T Consensus       374 ~~~  376 (380)
T 3iz6_a          374 SGH  376 (380)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            853

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=1.5e-26  Score=251.11  Aligned_cols=263  Identities=21%  Similarity=0.247  Sum_probs=209.8

Q ss_pred             cccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC
Q psy1242         253 TANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS  332 (540)
Q Consensus       253 ~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~  332 (540)
                      ...+.+.+.+++..+++++.|+++++|+..........+|.+.+.    .+.+++|+..+++++.+... ..+.+.....
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~----~~~~~~~~~~l~t~~~d~~i-~~w~~~~~~~  337 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW----GVAFSPDGQTIASASDDKTV-KLWNRNGQHL  337 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE----EEEECTTSSEEEEEETTSCE-EEEETTSCEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeE----EEEECCCCCEEEEEeCCCeE-EEEeCCCCee
Confidence            334455666777789999999999999976543344445654432    46788998877776544332 2222211100


Q ss_pred             ---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------
Q psy1242         333 ---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------  384 (540)
Q Consensus       333 ---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------  384 (540)
                         ....-.+.+++++|+|+. +++|+.|++|++||. +++.+..+.+|...|.+                         
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~  415 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  415 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EEEeCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence               011123678899999995 799999999999996 47888888888776643                         


Q ss_pred             -eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC
Q psy1242         385 -RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL  463 (540)
Q Consensus       385 -~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg  463 (540)
                       +.+..+.+|...|++++|+|    ++++|++++.|++|++||...            +.+..+.+|...|++++|+|++
T Consensus       416 ~~~~~~~~~~~~~v~~~~~s~----d~~~l~~~~~d~~v~~w~~~~------------~~~~~~~~~~~~v~~~~~spd~  479 (577)
T 2ymu_A          416 GQLLQTLTGHSSSVWGVAFSP----DDQTIASASDDKTVKLWNRNG------------QLLQTLTGHSSSVRGVAFSPDG  479 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTS------------CEEEEEECCSSCEEEEEECTTS
T ss_pred             CCEEEEecCCCCCeEEEEECC----CCCEEEEEcCCCEEEEEECCC------------CEEEEEcCCCCCEEEEEEcCCC
Confidence             45577889999999999999    999999999999999999643            5678889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEEeee-cCCcceecC
Q psy1242         464 GLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       464 ~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~~~~-~~~~V~~va  540 (540)
                      ++|++++.|++|++|+.++++++.+.+|..  .|.+++|+|+|++|++ +.|+.|++||.+|+.+..+. |.+.|++|+
T Consensus       480 ~~las~~~d~~i~iw~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~  556 (577)
T 2ymu_A          480 QTIASASDDKTVKLWNRNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA  556 (577)
T ss_dssp             CEEEEEETTSEEEEEETTSCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEE
T ss_pred             CEEEEEeCCCEEEEEcCCCCEEEEEeCCCC--CEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEE
Confidence            999999999999999999999999999988  7899999999999998 56899999999999998886 999998874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=7.4e-27  Score=244.43  Aligned_cols=234  Identities=15%  Similarity=0.177  Sum_probs=185.5

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |..++..+.+.+++..++|||.|++|++||..+.... ...+|...|    ..+.+++++..+++|+.+... ..+.+..
T Consensus       149 h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V----~~v~~~p~~~~l~s~s~D~~i-~~wd~~~  223 (410)
T 1vyh_C          149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV----SSVSIMPNGDHIVSASRDKTI-KMWEVQT  223 (410)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCE----EEEEECSSSSEEEEEETTSEE-EEEETTT
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCE----EEEEEeCCCCEEEEEeCCCeE-EEEECCC
Confidence            3344455556666667999999999999999776543 334565433    357788998877776544332 2222221


Q ss_pred             CcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242         330 NFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC  405 (540)
Q Consensus       330 ~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~  405 (540)
                      ...    ......+.+++++|+|+ +|++|+.|++|++||+.++++...+               .+|...|.+++|+| 
T Consensus       224 ~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~---------------~~h~~~v~~~~~~~-  286 (410)
T 1vyh_C          224 GYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAEL---------------REHRHVVECISWAP-  286 (410)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEECC-
T ss_pred             CcEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEe---------------cCCCceEEEEEEcC-
Confidence            100    01112367888999999 4799999999999999999988888               78999999999998 


Q ss_pred             ccCC--------------------CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE
Q psy1242         406 NITA--------------------DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL  465 (540)
Q Consensus       406 ~~~d--------------------g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~  465 (540)
                         +                    |.+|++|+.|++|++||++.           +.++..+.+|...|++++|+|++++
T Consensus       287 ---~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-----------~~~~~~~~~h~~~v~~v~~~~~g~~  352 (410)
T 1vyh_C          287 ---ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-----------GMCLMTLVGHDNWVRGVLFHSGGKF  352 (410)
T ss_dssp             ---SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEECSSSSC
T ss_pred             ---cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-----------CceEEEEECCCCcEEEEEEcCCCCE
Confidence               4                    67899999999999999876           4678899999999999999999999


Q ss_pred             EEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242         466 VVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       466 lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~  522 (540)
                      |++|+.||+|++|+. +++++.++.+|..  .|.+++|+|++.+|++ +.|++|++|++
T Consensus       353 l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          353 ILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999976 7788899999988  7899999999999988 56899999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=236.76  Aligned_cols=254  Identities=17%  Similarity=0.137  Sum_probs=186.4

Q ss_pred             eeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc----cCCCCcCCCCCCCCCccccCCCCee
Q psy1242         237 VCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI----QSPSYAETPGSPPGNLPLTLDPILT  312 (540)
Q Consensus       237 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~----~~~~~~~~v~~~~~~~~~s~D~~l~  312 (540)
                      .+..+.|+|++..                 ++|++.|++|++|+..+....    ...+|.+.|    ..+.|++|+.++
T Consensus        18 ~v~~l~~sp~g~~-----------------las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v----~~~~~sp~g~~l   76 (345)
T 3fm0_A           18 RCWFLAWNPAGTL-----------------LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTV----RKVAWSPCGNYL   76 (345)
T ss_dssp             CEEEEEECTTSSC-----------------EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCE----EEEEECTTSSEE
T ss_pred             cEEEEEECCCCCE-----------------EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcE----EEEEECCCCCEE
Confidence            5666677776665                 999999999999998765311    123565443    357899999888


Q ss_pred             eccCCCCCCccccccCCC-cC-----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeee
Q psy1242         313 HPTSNNNAPVPKRHLGDN-FS-----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRI  386 (540)
Q Consensus       313 ~~g~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~  386 (540)
                      ++|+.+.... .+.+... ..     ....-.+.+++|+|+++. |++|+.|++|++||+.+++....+           
T Consensus        77 ~s~s~D~~v~-iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~-----------  143 (345)
T 3fm0_A           77 ASASFDATTC-IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEYECV-----------  143 (345)
T ss_dssp             EEEETTSCEE-EEEECCC-EEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECTTSCEEEE-----------
T ss_pred             EEEECCCcEE-EEEccCCCeEEEEEccCCCCCceEEEEeCCCCE-EEEEECCCeEEEEECCCCCCeEEE-----------
Confidence            8776544332 2221110 00     011223788999999995 799999999999999876432211           


Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV  466 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l  466 (540)
                       ..+.+|...|++++|+|    ++.+|++|+.|++|++||.+...         ..+...+.+|...|++++|+|++++|
T Consensus       144 -~~~~~h~~~v~~~~~~p----~~~~l~s~s~d~~i~~w~~~~~~---------~~~~~~~~~h~~~v~~l~~sp~g~~l  209 (345)
T 3fm0_A          144 -SVLNSHTQDVKHVVWHP----SQELLASASYDDTVKLYREEEDD---------WVCCATLEGHESTVWSLAFDPSGQRL  209 (345)
T ss_dssp             -EEECCCCSCEEEEEECS----SSSCEEEEETTSCEEEEEEETTE---------EEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             -EEecCcCCCeEEEEECC----CCCEEEEEeCCCcEEEEEecCCC---------EEEEEEecCCCCceEEEEECCCCCEE
Confidence             22378999999999999    99999999999999999987532         13567889999999999999999999


Q ss_pred             EEEeCCCcEEEEeC-C---------------CcEEEEecC-CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCc---
Q psy1242         467 VSGSQLGPVLVHTT-F---------------GDLLRSLDP-PSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGN---  525 (540)
Q Consensus       467 asgs~Dg~v~iw~~-~---------------g~~~~~l~~-~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~---  525 (540)
                      ++|+.||+|+||+. .               .+++.++.+ |..  .|.+++|+|++..|++ +.|+.|++|+.+..   
T Consensus       210 ~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~  287 (345)
T 3fm0_A          210 ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR--TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDP  287 (345)
T ss_dssp             EEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS--CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCT
T ss_pred             EEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCC--cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCc
Confidence            99999999999963 1               134555655 555  7899999999998888 56899999997632   


Q ss_pred             ------EEEee--ecCCcceecC
Q psy1242         526 ------RLRHE--SHNDNLQKTA  540 (540)
Q Consensus       526 ------~l~~~--~~~~~V~~va  540 (540)
                            .....  .|.+.|++|+
T Consensus       288 ~~~~~~~~~~~~~~h~~~V~~v~  310 (345)
T 3fm0_A          288 QQPTFSLTAHLHQAHSQDVNCVA  310 (345)
T ss_dssp             TSCCEEEEEEETTSSSSCEEEEE
T ss_pred             ceeeEEEEeeecccccCcEeEeE
Confidence                  11121  3778888764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.95  E-value=5.3e-26  Score=229.54  Aligned_cols=168  Identities=19%  Similarity=0.257  Sum_probs=149.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|+|+|++ |++|+.|++|++||+.+++.+..+               .+|.+.|.+++|+|    ++.+|++|+.
T Consensus        68 v~~~~~s~dg~~-l~s~s~D~~v~~wd~~~~~~~~~~---------------~~h~~~v~~~~~~~----~~~~l~s~s~  127 (319)
T 3frx_A           68 VQDCTLTADGAY-ALSASWDKTLRLWDVATGETYQRF---------------VGHKSDVMSVDIDK----KASMIISGSR  127 (319)
T ss_dssp             EEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE---------------ECCSSCEEEEEECT----TSCEEEEEET
T ss_pred             EEEEEECCCCCE-EEEEeCCCEEEEEECCCCCeeEEE---------------ccCCCcEEEEEEcC----CCCEEEEEeC
Confidence            678888999995 799999999999999999998888               89999999999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE------LGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd------g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      |++|++||++.            .++..+.+|...|.+++++|.      +..+++++.|++|++|+. +++....+.+|
T Consensus       128 D~~i~vwd~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h  195 (319)
T 3frx_A          128 DKTIKVWTIKG------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH  195 (319)
T ss_dssp             TSCEEEEETTS------------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CCeEEEEECCC------------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence            99999999863            467888999999999999985      448999999999999977 67888899999


Q ss_pred             CCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242         492 SGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQKTA  540 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~~va  540 (540)
                      ..  .|.+++|+|+|++|++ +.||.|++||+. ++.+..+.+.+.|.+++
T Consensus       196 ~~--~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~  244 (319)
T 3frx_A          196 NS--NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA  244 (319)
T ss_dssp             CS--CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEE
T ss_pred             CC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEE
Confidence            88  7899999999999998 468999999987 67777777777777653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=1.9e-25  Score=242.48  Aligned_cols=262  Identities=21%  Similarity=0.235  Sum_probs=205.4

Q ss_pred             ccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-
Q psy1242         254 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS-  332 (540)
Q Consensus       254 ~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~-  332 (540)
                      ......+.+++..+++++.|++|++|+..........+|...+    ..+.+++|+..+++++.+... ..+....... 
T Consensus       223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v----~~v~~~~d~~~l~~~~~d~~i-~~w~~~~~~~~  297 (577)
T 2ymu_A          223 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV----NGVAFRPDGQTIASASDDKTV-KLWNRNGQLLQ  297 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCE----EEEEECTTSSEEEEEETTSCE-EEEETTSCEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCE----EEEEEcCCCCEEEEEeCCCEE-EEEeCCCcEEE
Confidence            3444556666677999999999999997654333344555333    356788999877776544332 1121111100 


Q ss_pred             --cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------
Q psy1242         333 --QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------  384 (540)
Q Consensus       333 --~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------  384 (540)
                        ....-.+.+++++|+++. +++++.|++|++||.. ++.+..+.+|...+.+                          
T Consensus       298 ~~~~h~~~v~~~~~~~~~~~-l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~  375 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG  375 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC
T ss_pred             EEecCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC
Confidence              011123678889999995 7999999999999986 4555667777665532                          


Q ss_pred             eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC
Q psy1242         385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG  464 (540)
Q Consensus       385 ~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~  464 (540)
                      +.+..+.+|...|++++|+|    +|++|++++.|++|++||..            ++.+..+.+|...|++++|+|+++
T Consensus       376 ~~~~~~~~~~~~v~~~~~s~----dg~~l~~~~~d~~v~~~~~~------------~~~~~~~~~~~~~v~~~~~s~d~~  439 (577)
T 2ymu_A          376 QLLQTLTGHSSSVRGVAFSP----DGQTIASASDDKTVKLWNRN------------GQLLQTLTGHSSSVWGVAFSPDDQ  439 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECT----TSSCEEEEETTSEEEEECTT------------CCEEEEEECCSSCEEEEEECTTSS
T ss_pred             CEEEEecCCCCCeEEEEECC----CCCEEEEEeCCCEEEEEeCC------------CCEEEEecCCCCCeEEEEECCCCC
Confidence            45677789999999999999    99999999999999999954            356788999999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEEeee-cCCcceecC
Q psy1242         465 LVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       465 ~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~~~~-~~~~V~~va  540 (540)
                      +|++++.|++|++|+.+++.+..+.+|..  .|.+++|+|+|++|++ +.|+.|++|+.+|+.+..+. |.+.|++|+
T Consensus       440 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~--~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~  515 (577)
T 2ymu_A          440 TIASASDDKTVKLWNRNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA  515 (577)
T ss_dssp             EEEEEETTSEEEEEETTSCEEEEEECCSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEE
Confidence            99999999999999999999999999988  7899999999999998 46899999999999998886 889998874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.94  E-value=7.5e-26  Score=232.39  Aligned_cols=229  Identities=15%  Similarity=0.089  Sum_probs=167.6

Q ss_pred             eeecCCcEEEEEccCcceEEEEcCCCCCcccC-----CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC---
Q psy1242         258 VTLHMPSVVTVTANHQFAINRWNPDYAASIQS-----PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD---  329 (540)
Q Consensus       258 ~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-----~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~---  329 (540)
                      ..+.++.. +++++.|++|++||+.++.....     .+|.+.|    ..+.|++|+..+++|+.+... ..+.+..   
T Consensus       100 ~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V----~~v~~spdg~~l~sgs~dg~v-~iwd~~~~~~  173 (357)
T 4g56_B          100 VAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIV----KTLSVFSDGTQAVSGGKDFSV-KVWDLSQKAV  173 (357)
T ss_dssp             EEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCE----EEEEECSSSSEEEEEETTSCE-EEEETTTTEE
T ss_pred             EEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCE----EEEEECCCCCEEEEEeCCCeE-EEEECCCCcE
Confidence            34445554 45678899999999877553322     2454333    357899999888877544433 2222211   


Q ss_pred             --CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         330 --NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       330 --~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                        .+. ...-.+.+++|++++..++++++.|++|++||+++++....+..             ..|...+++++|+|.  
T Consensus       174 ~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-------------~~~~~~v~~v~~sp~--  237 (357)
T 4g56_B          174 LKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-------------CASDTIPTSVTWHPE--  237 (357)
T ss_dssp             EEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-------------TTCCSCEEEEEECTT--
T ss_pred             EEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-------------ccccccccchhhhhc--
Confidence              111 11123788899999876789999999999999998887655411             457788999999993  


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         408 TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-GLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       408 ~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                       ++.+|++|+.|++|++||++.           ++++..+.+|...|++++|+|++ ++||+|+.||+|+||+. +++++
T Consensus       238 -~~~~la~g~~d~~i~~wd~~~-----------~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          238 -KDDTFACGDETGNVSLVNIKN-----------PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             -STTEEEEEESSSCEEEEESSC-----------GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             -ccceEEEeecccceeEEECCC-----------CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence             367899999999999999876           45778999999999999999987 57999999999999987 56666


Q ss_pred             EEecCCCCCCCceEEEEee-CCCEEEE-ecCCeEEEEecC
Q psy1242         486 RSLDPPSGFASPESVVMSR-EGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fsp-dg~~l~s-~~dg~I~lw~~~  523 (540)
                      +.+ +|.+  .|.+|+|+| ++.+|++ +.||+|++|++.
T Consensus       306 ~~~-~H~~--~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          306 RDL-SHRD--FVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EEC-CCSS--CEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEC-CCCC--CEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            554 6777  789999998 7999887 569999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=3.1e-25  Score=226.01  Aligned_cols=208  Identities=14%  Similarity=0.183  Sum_probs=164.0

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  342 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  342 (540)
                      ++..++|+|.|++|++|+.........                     .         ......+.++..     .+.++
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~---------------------~---------~~~~~~l~~h~~-----~V~~~   82 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGY---------------------F---------GIPHKALTGHNH-----FVSDL   82 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSB---------------------S---------EEEEEEECCCSS-----CEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccc---------------------c---------ccccchhccCCC-----ceEEE
Confidence            445699999999999999754211000                     0         001111222211     26788


Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV  422 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV  422 (540)
                      +|+|++.+ +++|+.|++|++||+++++.+..+               .+|.+.|.+++|+|    ++++|++|+.|++|
T Consensus        83 ~~~~~~~~-l~s~s~D~~v~lwd~~~~~~~~~~---------------~~h~~~v~~v~~sp----~~~~l~s~~~d~~i  142 (343)
T 2xzm_R           83 ALSQENCF-AISSSWDKTLRLWDLRTGTTYKRF---------------VGHQSEVYSVAFSP----DNRQILSAGAEREI  142 (343)
T ss_dssp             EECSSTTE-EEEEETTSEEEEEETTSSCEEEEE---------------ECCCSCEEEEEECS----STTEEEEEETTSCE
T ss_pred             EECCCCCE-EEEEcCCCcEEEEECCCCcEEEEE---------------cCCCCcEEEEEECC----CCCEEEEEcCCCEE
Confidence            89999995 799999999999999999988888               88999999999999    99999999999999


Q ss_pred             EEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCCC----------CEEEEEeCCCcEEEEeCCCcEEEEec
Q psy1242         423 LLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAEL----------GLVVSGSQLGPVLVHTTFGDLLRSLD  489 (540)
Q Consensus       423 ~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spdg----------~~lasgs~Dg~v~iw~~~g~~~~~l~  489 (540)
                      ++||+...            .....   .+|...|.+++|+|++          .++++++.||+|++|+.+++....+.
T Consensus       143 ~~wd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  210 (343)
T 2xzm_R          143 KLWNILGE------------CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK  210 (343)
T ss_dssp             EEEESSSC------------EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE
T ss_pred             EEEeccCC------------ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc
Confidence            99998631            22222   3789999999999987          78999999999999998888888999


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEec-C-CcEEEeeecCCcceec
Q psy1242         490 PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM-N-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~-~-g~~l~~~~~~~~V~~v  539 (540)
                      .|..  .|.+++|+|+|++|+++ .|+.|++||+ + +..+..+.+...|.++
T Consensus       211 ~h~~--~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v  261 (343)
T 2xzm_R          211 AHES--NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI  261 (343)
T ss_dssp             CCSS--CEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEE
T ss_pred             Cccc--cceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEE
Confidence            9988  78999999999999985 6899999998 3 3444444455666665

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=3.8e-25  Score=221.48  Aligned_cols=245  Identities=14%  Similarity=0.136  Sum_probs=184.0

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-C---cc
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-S---QK  334 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~---~~  334 (540)
                      +.+++..+++++.|++|++|+..++.... ..+|...+    ..+.|++|+.++++++.+... ..+.+.... .   ..
T Consensus        31 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~s~~~d~~i-~vwd~~~~~~~~~~~~  105 (312)
T 4ery_A           31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI----SDVAWSSDSNLLVSASDDKTL-KIWDVSSGKCLKTLKG  105 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE----EEEEECTTSSEEEEEETTSEE-EEEETTTCCEEEEEEC
T ss_pred             ECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCce----EEEEEcCCCCEEEEECCCCEE-EEEECCCCcEEEEEcC
Confidence            33344449999999999999987665433 23454333    357789999888877544332 222222110 0   01


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      ..-.+.+++|+|+++. |++|+.|++|++||+++++.+..+               .+|...|++++|+|    ++++|+
T Consensus       106 ~~~~v~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~~----~~~~l~  165 (312)
T 4ery_A          106 HSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTL---------------PAHSDPVSAVHFNR----DGSLIV  165 (312)
T ss_dssp             CSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEECT----TSSEEE
T ss_pred             CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCEEEEEe---------------cCCCCcEEEEEEcC----CCCEEE
Confidence            1123688899999995 799999999999999999988888               78999999999999    999999


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPS  492 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~  492 (540)
                      +|+.|++|++||++.           .+++..+ ..+...+.+++|+|++++|++++.||.|++|+. +++.+..+.+|.
T Consensus       166 ~~~~d~~i~~wd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  234 (312)
T 4ery_A          166 SSSYDGLCRIWDTAS-----------GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK  234 (312)
T ss_dssp             EEETTSCEEEEETTT-----------CCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred             EEeCCCcEEEEECCC-----------CceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence            999999999999876           2344444 456778999999999999999999999999976 788889998876


Q ss_pred             CCCCceEEEEe-eCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         493 GFASPESVVMS-REGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       493 ~~~~v~~l~fs-pdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      .........++ +++.+|+++ .||.|++|+++ ++.+..+. |.+.|.+++
T Consensus       235 ~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  286 (312)
T 4ery_A          235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA  286 (312)
T ss_dssp             CSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEe
Confidence            63222233444 678888885 58999999997 77777775 888887653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-25  Score=227.36  Aligned_cols=238  Identities=18%  Similarity=0.151  Sum_probs=173.6

Q ss_pred             EEEEccCcceEEEEcCCCCCc--ccC--CC-CcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC----cC----
Q psy1242         266 VTVTANHQFAINRWNPDYAAS--IQS--PS-YAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN----FS----  332 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~--~~~--~~-~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~----~~----  332 (540)
                      .++|++.|++|++|+...+..  ...  .+ |.+.|    ..+.|++|+.++++|+.+... ..+.+...    ..    
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v----~~v~~sp~~~~las~s~D~~v-~iw~~~~~~~~~~~~~~~  100 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAI----RSVAWRPHTSLLAAGSFDSTV-SIWAKEESADRTFEMDLL  100 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCE----EEEEECTTSSEEEEEETTSCE-EEEEC-------CCCEEE
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCE----EEEEECCCCCEEEEEeCCCcE-EEEEcccCcCccccceeE
Confidence            599999999999999876431  111  22 55433    357899999888877654433 22222110    00    


Q ss_pred             ---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC----eEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242         333 ---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA----RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC  405 (540)
Q Consensus       333 ---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g----~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~  405 (540)
                         ....-.+.+++|+|+|++ |++|+.|++|++||++..    +++..+               .+|...|++++|+| 
T Consensus       101 ~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~~---------------~~h~~~v~~v~~~p-  163 (330)
T 2hes_X          101 AIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYECISVL---------------QEHSQDVKHVIWHP-  163 (330)
T ss_dssp             EEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEEE---------------CCCSSCEEEEEECS-
T ss_pred             EEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEEe---------------ccCCCceEEEEECC-
Confidence               111223788999999995 799999999999999432    344455               88999999999999 


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCC-
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVLVHTTFG-  482 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~iw~~~g-  482 (540)
                         ++.+|++|+.|++|++||.....         .+++..+.+|...|.+++|+|+  +..|++|+.|++|++|+... 
T Consensus       164 ---~~~~l~s~s~D~~i~iW~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          164 ---SEALLASSSYDDTVRIWKDYDDD---------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             ---SSSEEEEEETTSCEEEEEEETTE---------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             ---CCCEEEEEcCCCeEEEEECCCCC---------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence               99999999999999999976522         2467889999999999999998  67899999999999996522 


Q ss_pred             --------cEEEEecC-CCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCc---EEEee--ecCC-cceec
Q psy1242         483 --------DLLRSLDP-PSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN---RLRHE--SHND-NLQKT  539 (540)
Q Consensus       483 --------~~~~~l~~-~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~---~l~~~--~~~~-~V~~v  539 (540)
                              .+...+.. |..  .|.+++|++++.++.++.||.|++|+....   .+...  .|.. .|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~h~~--~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v  301 (330)
T 2hes_X          232 DEDDQQEWVCEAILPDVHKR--QVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV  301 (330)
T ss_dssp             CTTSCEEEEEEEECCSCCSS--CEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred             CccccceeEEeeeccccccc--ceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence                    34555554 666  789999998775555578999999998632   23332  2555 67665

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.94  E-value=2.6e-25  Score=222.04  Aligned_cols=240  Identities=15%  Similarity=0.063  Sum_probs=173.4

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCC---cccCCCCcCCCCCCCCCccccC--
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTL--  307 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~---~~~~~~~~~~v~~~~~~~~~s~--  307 (540)
                      .|.+.+..+.|++++..                 ++|++.|++|++|+.....   .....+|.+.|.    .+.|++  
T Consensus         7 ~h~~~V~~~~~s~~g~~-----------------las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~----~v~~s~~~   65 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKR-----------------MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW----RVDWAHPK   65 (297)
T ss_dssp             SCSSCEEEEEECTTSSE-----------------EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE----EEEECCGG
T ss_pred             CCcCceEEEEECCCCCE-----------------EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE----EEEecCCC
Confidence            45566667777766655                 9999999999999986432   223346765443    456664  


Q ss_pred             CCCeeeccCCCCCCccccccCCC-cC-----cceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCeE--EEEEec
Q psy1242         308 DPILTHPTSNNNAPVPKRHLGDN-FS-----QKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARI--VQIIFG  377 (540)
Q Consensus       308 D~~l~~~g~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~--~~~l~~  377 (540)
                      ++.++++|+.+... ..+.+... ..     ......+.+++|+|+  |. +|++|+.|++|++||++++..  ...+  
T Consensus        66 ~g~~l~s~s~D~~v-~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~--  141 (297)
T 2pm7_B           66 FGTILASCSYDGKV-MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIII--  141 (297)
T ss_dssp             GCSEEEEEETTTEE-EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEE--
T ss_pred             cCCEEEEEcCCCEE-EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeee--
Confidence            36677766544332 23333211 00     011223788899997  77 579999999999999987632  2333  


Q ss_pred             ccceeeeeeEEEeeccCcceEEEEeccCccCC-------------CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcce
Q psy1242         378 HYGVVTSRIVQIIFGHYGVVTCLSRSECNITA-------------DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR  444 (540)
Q Consensus       378 ~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-------------g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~  444 (540)
                                   .+|...|.+++|+|    +             +++|++|+.|++|++||++.....       ..+.
T Consensus       142 -------------~~h~~~v~~~~~~p----~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-------~~~~  197 (297)
T 2pm7_B          142 -------------DAHAIGVNSASWAP----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLE  197 (297)
T ss_dssp             -------------ECCSSCEEEEEECC----CC------------CCEEEEEETTSCEEEEEEETTTTE-------EEEE
T ss_pred             -------------ecccCccceEeecC----CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-------EEEE
Confidence                         78999999999999    5             579999999999999998753211       1256


Q ss_pred             EEeccCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC---c-EEEEe--cCCCCCCCceEEEEeeCCCEEEE-ecC
Q psy1242         445 ATLTGHEQPVTSVAISAEL---GLVVSGSQLGPVLVHTTFG---D-LLRSL--DPPSGFASPESVVMSREGVIVVN-YER  514 (540)
Q Consensus       445 ~~l~~h~~~V~~v~~spdg---~~lasgs~Dg~v~iw~~~g---~-~~~~l--~~~~~~~~v~~l~fspdg~~l~s-~~d  514 (540)
                      ..+.+|...|.+++|+|++   .+||+|+.|++|+||+...   . ....+  ..+..  .|.+++|+|+|++|++ +.|
T Consensus       198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEETT
T ss_pred             EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC--cEEEEEECCCCCEEEEEcCC
Confidence            7889999999999999985   7999999999999997532   1 22334  34555  7899999999999988 568


Q ss_pred             CeEEEEecC
Q psy1242         515 GHIAAFTMN  523 (540)
Q Consensus       515 g~I~lw~~~  523 (540)
                      +.|++|+.+
T Consensus       276 ~~v~lw~~~  284 (297)
T 2pm7_B          276 NKVTLWKEN  284 (297)
T ss_dssp             SCEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999975

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=2.9e-25  Score=226.04  Aligned_cols=227  Identities=14%  Similarity=0.083  Sum_probs=173.8

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCc-----ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAAS-----IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~-----~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      .....+.+++..+++++.|+++++|+......     ....+|.+.+    ..+.+++++.+++++. + .....+.+..
T Consensus       100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~l~s~s~-d-~~i~~wd~~~  173 (340)
T 1got_B          100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL----SCCRFLDDNQIVTSSG-D-TTCALWDIET  173 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCE----EEEEEEETTEEEEEET-T-SCEEEEETTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccE----EEEEECCCCcEEEEEC-C-CcEEEEECCC
Confidence            34445666677799999999999999875431     1122454333    2455677777555442 2 2222222221


Q ss_pred             C-----cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         330 N-----FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       330 ~-----~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      .     +. .....+.+++|+|+++ ++++|+.|++|++||+++++.+..+               .+|...|++++|+|
T Consensus       174 ~~~~~~~~-~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~---------------~~h~~~v~~v~~~p  236 (340)
T 1got_B          174 GQQTTTFT-GHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTF---------------TGHESDINAICFFP  236 (340)
T ss_dssp             TEEEEEEC-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEE---------------CCCSSCEEEEEECT
T ss_pred             CcEEEEEc-CCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEE---------------cCCcCCEEEEEEcC
Confidence            1     11 1112378889999999 5799999999999999999988888               88999999999999


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-F  481 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~  481 (540)
                          ++++|++|+.|++|++||++..           +.+..+.  .+...|++++|+|++++|++|+.||.|++|+. +
T Consensus       237 ----~~~~l~s~s~d~~v~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          237 ----NGNAFATGSDDATCRLFDLRAD-----------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             ----TSSEEEEEETTSCEEEEETTTT-----------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ----CCCEEEEEcCCCcEEEEECCCC-----------cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence                9999999999999999998762           3344443  33457999999999999999999999999976 7


Q ss_pred             CcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEe
Q psy1242         482 GDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFT  521 (540)
Q Consensus       482 g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~  521 (540)
                      ++.+..+.+|..  .|.+++|+|+|.+|++| .|+.|++|+
T Consensus       302 ~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          302 ADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            888999999998  88999999999999985 689999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=8.1e-25  Score=227.38  Aligned_cols=255  Identities=16%  Similarity=0.101  Sum_probs=187.5

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCC--------------CCCCCCccccCCCCeeecc
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETP--------------GSPPGNLPLTLDPILTHPT  315 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v--------------~~~~~~~~~s~D~~l~~~g  315 (540)
                      |...+..+.+.+++..+++++ +.++++|+..++...... .+....              ......+.|++|+.++++|
T Consensus        63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            444455556666666688876 789999998776533222 111100              0012357899999888877


Q ss_pred             CCCCCCccccccCCCc----CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEee
Q psy1242         316 SNNNAPVPKRHLGDNF----SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIF  391 (540)
Q Consensus       316 ~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~  391 (540)
                      +.+... ..+.+....    -....-.+.+++|+|+++. |++|+.|++|++||+++++....+                
T Consensus       142 ~~d~~i-~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~----------------  203 (393)
T 1erj_A          142 AEDRLI-RIWDIENRKIVMILQGHEQDIYSLDYFPSGDK-LVSGSGDRTVRIWDLRTGQCSLTL----------------  203 (393)
T ss_dssp             ETTSCE-EEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE----------------
T ss_pred             cCCCeE-EEEECCCCcEEEEEccCCCCEEEEEEcCCCCE-EEEecCCCcEEEEECCCCeeEEEE----------------
Confidence            654333 222221100    0011123788899999995 789999999999999999887766                


Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-------ccCCCCEEEEEEcCCCC
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-------TGHEQPVTSVAISAELG  464 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-------~~h~~~V~~v~~spdg~  464 (540)
                      .+.+.+.+++|+|.   ++++|++|+.|++|++||+++.           ..+..+       .+|...|.+++|+|+++
T Consensus       204 ~~~~~v~~~~~~~~---~~~~l~~~s~d~~v~iwd~~~~-----------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~  269 (393)
T 1erj_A          204 SIEDGVTTVAVSPG---DGKYIAAGSLDRAVRVWDSETG-----------FLVERLDSENESGTGHKDSVYSVVFTRDGQ  269 (393)
T ss_dssp             ECSSCEEEEEECST---TCCEEEEEETTSCEEEEETTTC-----------CEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred             EcCCCcEEEEEECC---CCCEEEEEcCCCcEEEEECCCC-----------cEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence            35678999999984   7899999999999999998763           233333       68999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCC-------------CcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEe
Q psy1242         465 LVVSGSQLGPVLVHTTF-------------GDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       465 ~lasgs~Dg~v~iw~~~-------------g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~  529 (540)
                      +|++|+.||+|++|+..             +.+...+.+|..  .|.+++|+|++.+|++ +.|+.|++||+. |+.+..
T Consensus       270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~  347 (393)
T 1erj_A          270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM  347 (393)
T ss_dssp             EEEEEETTSEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC--cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            99999999999999752             345667788887  7899999999999998 468999999987 888877


Q ss_pred             ee-cCCcceecC
Q psy1242         530 ES-HNDNLQKTA  540 (540)
Q Consensus       530 ~~-~~~~V~~va  540 (540)
                      +. |.+.|.+++
T Consensus       348 l~~h~~~v~~v~  359 (393)
T 1erj_A          348 LQGHRNSVISVA  359 (393)
T ss_dssp             EECCSSCEEEEE
T ss_pred             ECCCCCCEEEEE
Confidence            75 888887763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=4.4e-25  Score=227.42  Aligned_cols=171  Identities=12%  Similarity=0.048  Sum_probs=139.2

Q ss_pred             EEEEEEecCCCEE-EEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------e--eEEE
Q psy1242         339 HNCFVTTVDSRFL-LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------R--IVQI  389 (540)
Q Consensus       339 ~~~~~~spdg~~l-lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------~--~~~~  389 (540)
                      +.+++|||||+++ +|+|+.|++|+|||+.+++.+..+. |...|.+                          .  ....
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence            5678899999975 2456689999999999999888875 4444432                          1  1233


Q ss_pred             eeccCcceEEEEeccCccCCCcEEEEEeCCC----cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE
Q psy1242         390 IFGHYGVVTCLSRSECNITADCFIASGSADC----TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL  465 (540)
Q Consensus       390 l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg----tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~  465 (540)
                      ..+|...|++++|+|    ++..+++++.|+    ++++|++......       ......+.+|...|++++|+|+|++
T Consensus       215 ~~~~~~~v~~v~fsp----dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~V~~~~~Spdg~~  283 (365)
T 4h5i_A          215 DFDKNWSLSKINFIA----DDTVLIAASLKKGKGIVLTKISIKSGNTS-------VLRSKQVTNRFKGITSMDVDMKGEL  283 (365)
T ss_dssp             CCCTTEEEEEEEEEE----TTEEEEEEEESSSCCEEEEEEEEETTEEE-------EEEEEEEESSCSCEEEEEECTTSCE
T ss_pred             cCCCCCCEEEEEEcC----CCCEEEEEecCCcceeEEeecccccceec-------ceeeeeecCCCCCeEeEEECCCCCc
Confidence            457889999999999    999999999887    6788887653221       1234567899999999999999999


Q ss_pred             EEEEeCCCcEEEEeC-CCcEEEEe-cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         466 VVSGSQLGPVLVHTT-FGDLLRSL-DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       466 lasgs~Dg~v~iw~~-~g~~~~~l-~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      ||+|+.|++|+||+. +++++.++ .+|..  +|++|+|+|||++|+++ .|++|+||++.
T Consensus       284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~--~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          284 AVLASNDNSIALVKLKDLSMSKIFKQAHSF--AITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEETTSSSS--CEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             eEEEcCCCEEEEEECCCCcEEEEecCcccC--CEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            999999999999986 88888875 78888  89999999999999985 68999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.94  E-value=6.2e-25  Score=228.29  Aligned_cols=248  Identities=18%  Similarity=0.153  Sum_probs=181.7

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-Cc
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-SQ  333 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~~  333 (540)
                      +.+.+.+++..+++++.|++|++||..+.... ...+|...|    ..+.|++|+..+++++.+... ..+.+.... ..
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v----~~~~~~p~~~~l~s~s~d~~v-~iwd~~~~~~~~  201 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI----YSLDYFPSGDKLVSGSGDRTV-RIWDLRTGQCSL  201 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE----EEEEECTTSSEEEEEETTSEE-EEEETTTTEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCE----EEEEEcCCCCEEEEecCCCcE-EEEECCCCeeEE
Confidence            44567778888999999999999999876533 234565443    357788999877777544332 223322110 00


Q ss_pred             --ceeeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         334 --KLRVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       334 --~~~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                        ...-.+.+++++| +++ +|++|+.|++|++||+++++.+..+....        ....+|.+.|++++|+|    +|
T Consensus       202 ~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~--------~~~~~h~~~v~~v~~~~----~g  268 (393)
T 1erj_A          202 TLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSEN--------ESGTGHKDSVYSVVFTR----DG  268 (393)
T ss_dssp             EEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECT----TS
T ss_pred             EEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccc--------cCCCCCCCCEEEEEECC----CC
Confidence              0111367888899 777 57999999999999999998876662111        11257999999999999    99


Q ss_pred             cEEEEEeCCCcEEEEEcCCCccccc-CCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIV-GETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~-~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      ++|++|+.|++|++||++....... .....+.+...+.+|...|.+++|+|++.+|++|+.||.|++|+. +++.+..+
T Consensus       269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence            9999999999999999875321100 001123466788899999999999999999999999999999976 88999999


Q ss_pred             cCCCCCCCceEEEEee------CCCEEEE-ecCCeEEEEecC
Q psy1242         489 DPPSGFASPESVVMSR------EGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       489 ~~~~~~~~v~~l~fsp------dg~~l~s-~~dg~I~lw~~~  523 (540)
                      .+|..  .|.+++|++      ++.+|++ +.||+|++|++.
T Consensus       349 ~~h~~--~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          349 QGHRN--SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             ECCSS--CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCC--CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            99988  789999986      6788888 568999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=4.9e-25  Score=220.79  Aligned_cols=235  Identities=13%  Similarity=0.151  Sum_probs=181.2

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC--c
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN--F  331 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~--~  331 (540)
                      .....+.++...+++++.|++|++||..++.... ..+|.+.|.    .+.+++++.++++|+.+... ..+.+...  .
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~----~~~~~~~~~~l~sgs~D~~v-~lWd~~~~~~~  132 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR----SIAVHPTKPYVLSGSDDLTV-KLWNWENNWAL  132 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE----EEEECSSSSEEEEEETTSCE-EEEEGGGTTEE
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE----EEEEcCCCCEEEEECCCCeE-EEEECCCCcch
Confidence            3344455566679999999999999998766433 345664443    57789999888877655443 22222211  0


Q ss_pred             ---CcceeeEEEEEEEecC-CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         332 ---SQKLRVRHNCFVTTVD-SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       332 ---~~~~~v~~~~~~~spd-g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                         -....-.+.|++|+|+ +. +|++|+.|++|++||+.+++....+.              .+|...|.+++++|.  
T Consensus       133 ~~~~~~h~~~v~~v~~~p~~~~-~l~sgs~D~~v~iwd~~~~~~~~~~~--------------~~~~~~v~~~~~~~~--  195 (304)
T 2ynn_A          133 EQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLT--------------TGQERGVNYVDYYPL--  195 (304)
T ss_dssp             EEEECCCCSCEEEEEECTTCTT-EEEEEETTSEEEEEETTCSSCSEEEE--------------CCCTTCEEEEEECCS--
T ss_pred             hhhhcccCCcEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCccceec--------------cCCcCcEEEEEEEEc--
Confidence               0111223788999994 56 58999999999999998776655441              467788999999862  


Q ss_pred             CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242         408 TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR  486 (540)
Q Consensus       408 ~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~  486 (540)
                      .++.+|++|+.|++|++||++.           ++++..+.+|...|.+++|+|++.+|++|+.||+|++|+. ++++++
T Consensus       196 ~~~~~l~s~s~D~~i~iWd~~~-----------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~  264 (304)
T 2ynn_A          196 PDKPYMITASDDLTIKIWDYQT-----------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK  264 (304)
T ss_dssp             TTCCEEEEEETTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCCCEEEEEcCCCeEEEEeCCC-----------CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence            1678999999999999999876           4678899999999999999999999999999999999976 789999


Q ss_pred             EecCCCCCCCceEEEEeeCCC--EEEEecCCeEEEEecCC
Q psy1242         487 SLDPPSGFASPESVVMSREGV--IVVNYERGHIAAFTMNG  524 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~--~l~s~~dg~I~lw~~~g  524 (540)
                      ++..+..  .+.+++|+|+|.  ++++|.++.+.+|++..
T Consensus       265 ~~~~~~~--~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          265 TLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             EECCSSS--SEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             eccCCCc--cEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            9998877  789999999886  68888888899998764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.93  E-value=1.3e-24  Score=222.86  Aligned_cols=227  Identities=13%  Similarity=0.049  Sum_probs=173.5

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcc-------cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-------QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL  327 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-------~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~  327 (540)
                      .....+.+++..+++++.|+++++|+.......       ....|.+.+    ..+.|++++..+++++.+... ..+.+
T Consensus       109 v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~t~s~D~~v-~lwd~  183 (354)
T 2pbi_B          109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL----SACSFTNSDMQILTASGDGTC-ALWDV  183 (354)
T ss_dssp             CCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCE----EEEEECSSSSEEEEEETTSEE-EEEET
T ss_pred             EEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcE----EEEEEeCCCCEEEEEeCCCcE-EEEeC
Confidence            445567778888999999999999987643211       112344322    246788888766666543322 22222


Q ss_pred             CC------CcCcceeeEEEEEEEec--CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEE
Q psy1242         328 GD------NFSQKLRVRHNCFVTTV--DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC  399 (540)
Q Consensus       328 ~~------~~~~~~~v~~~~~~~sp--dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~  399 (540)
                      ..      ...+...  +.+++++|  +|+ +|++|+.||+|++||+++++++..+               .+|...|++
T Consensus       184 ~~~~~~~~~~~h~~~--v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~~~~~~---------------~~h~~~v~~  245 (354)
T 2pbi_B          184 ESGQLLQSFHGHGAD--VLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQCVQAF---------------ETHESDVNS  245 (354)
T ss_dssp             TTCCEEEEEECCSSC--EEEEEECCCSSCC-EEEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEE
T ss_pred             CCCeEEEEEcCCCCC--eEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCcEEEEe---------------cCCCCCeEE
Confidence            21      1112222  55666666  567 5799999999999999999988888               889999999


Q ss_pred             EEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242         400 LSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG--HEQPVTSVAISAELGLVVSGSQLGPVLV  477 (540)
Q Consensus       400 l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~Dg~v~i  477 (540)
                      ++|+|    ++.+|++|+.|++|++||++..           +.+..+..  +...+.+++|+|++.+|++|+.|++|++
T Consensus       246 v~~~p----~~~~l~s~s~D~~v~lwd~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v  310 (354)
T 2pbi_B          246 VRYYP----SGDAFASGSDDATCRLYDLRAD-----------REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV  310 (354)
T ss_dssp             EEECT----TSSEEEEEETTSCEEEEETTTT-----------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEeC----CCCEEEEEeCCCeEEEEECCCC-----------cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence            99999    9999999999999999998762           33444433  3457899999999999999999999999


Q ss_pred             EeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEe
Q psy1242         478 HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFT  521 (540)
Q Consensus       478 w~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~  521 (540)
                      |+. +++.+..+.+|..  .|.+++|+|+|++|+++ .|++|++|+
T Consensus       311 wd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          311 WDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            986 8899999999988  88999999999999985 689999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=2.6e-24  Score=219.61  Aligned_cols=247  Identities=15%  Similarity=0.135  Sum_probs=172.9

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCc---ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF  331 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~---~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~  331 (540)
                      +..+.+.+++..+++++.|+++++|+......   ....+|.+.|    ..+.|++|+.++++|+.+... ..+.+....
T Consensus        64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v----~~v~~sp~~~~l~s~s~D~~v-~iwd~~~~~  138 (345)
T 3fm0_A           64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEV----KSVAWAPSGNLLATCSRDKSV-WVWEVDEED  138 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCE----EEEEECTTSSEEEEEETTSCE-EEEEECTTS
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCc----eEEEEeCCCCEEEEEECCCeE-EEEECCCCC
Confidence            33444455555699999999999999875432   2234565444    357899999888887654433 223222110


Q ss_pred             C-------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242         332 S-------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSR  402 (540)
Q Consensus       332 ~-------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~  402 (540)
                      .       ....-.+.+++|+|+++. |++|+.|++|++||.++++..  ..+               .+|.+.|++++|
T Consensus       139 ~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~~~~---------------~~h~~~v~~l~~  202 (345)
T 3fm0_A          139 EYECVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCCATL---------------EGHESTVWSLAF  202 (345)
T ss_dssp             CEEEEEEECCCCSCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEEEEE---------------CCCSSCEEEEEE
T ss_pred             CeEEEEEecCcCCCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEEEEe---------------cCCCCceEEEEE
Confidence            0       011123788899999995 799999999999999877533  344               899999999999


Q ss_pred             ccCccCCCcEEEEEeCCCcEEEEEcCCCcccc-c---CCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242         403 SECNITADCFIASGSADCTVLLWHWNARTQSI-V---GETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGSQLGPVLV  477 (540)
Q Consensus       403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~-~---~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~v~i  477 (540)
                      +|    +|++|++|+.|++|+||+........ .   +......++..+.+ |...|.+++|+|++..+++++.|+.|++
T Consensus       203 sp----~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~v  278 (345)
T 3fm0_A          203 DP----SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRV  278 (345)
T ss_dssp             CT----TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred             CC----CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEE
Confidence            99    99999999999999999974322110 0   00011234555655 8899999999999999999999999999


Q ss_pred             EeCC-Cc--------E-EEEecCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecC-CcEEE
Q psy1242         478 HTTF-GD--------L-LRSLDPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTMN-GNRLR  528 (540)
Q Consensus       478 w~~~-g~--------~-~~~l~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~-g~~l~  528 (540)
                      |+.. +.        . .....+|..  .|.+++|+|++. +|++ +.||+|++|++. ++.+.
T Consensus       279 w~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          279 FQEDPNSDPQQPTFSLTAHLHQAHSQ--DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             EEECTTSCTTSCCEEEEEEETTSSSS--CEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             EEeCCCCCcceeeEEEEeeecccccC--cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            9642 11        1 223456777  789999999984 8887 568999999987 44443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.93  E-value=1.5e-23  Score=210.22  Aligned_cols=245  Identities=13%  Similarity=0.097  Sum_probs=185.4

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC------CCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP------SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG  328 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~------~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~  328 (540)
                      ++...+.+++..+++++ |++|++|+..........      .|..    ....+.+++|+..+++++.+... ..+.+.
T Consensus        54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i-~~~d~~  127 (337)
T 1gxr_A           54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN----YIRSCKLLPDGCTLIVGGEASTL-SIWDLA  127 (337)
T ss_dssp             CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTS----BEEEEEECTTSSEEEEEESSSEE-EEEECC
T ss_pred             eEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCC----cEEEEEEcCCCCEEEEEcCCCcE-EEEECC
Confidence            34444555555688888 999999999765432222      2332    22357788999777766433222 222222


Q ss_pred             CCcC------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242         329 DNFS------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR  402 (540)
Q Consensus       329 ~~~~------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~  402 (540)
                      ....      ......+.+++|+|+++. +++|+.||.|++||+++++.+..+               .+|.+.|++++|
T Consensus       128 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~~~d~~~~~~~~~~---------------~~~~~~i~~~~~  191 (337)
T 1gxr_A          128 APTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQF---------------QGHTDGASCIDI  191 (337)
T ss_dssp             CC--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEE
T ss_pred             CCCcceeeecccCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCceeeee---------------ecccCceEEEEE
Confidence            1110      001123678899999995 789999999999999999988888               789999999999


Q ss_pred             ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy1242         403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFG  482 (540)
Q Consensus       403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g  482 (540)
                      +|    ++++|++++.|+.|++||++.           .+++..+ .|...+.+++|+|+++++++++.||.|++|+...
T Consensus       192 ~~----~~~~l~~~~~dg~i~~~d~~~-----------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          192 SN----DGTKLWTGGLDNTVRSWDLRE-----------GRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             CT----TSSEEEEEETTSEEEEEETTT-----------TEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             CC----CCCEEEEEecCCcEEEEECCC-----------CceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            99    999999999999999999876           2344444 5788899999999999999999999999998755


Q ss_pred             cEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         483 DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       483 ~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      .....+..|..  .|.+++|+|+|++|+++ .||.|++|+++ ++.+....|...|.++
T Consensus       256 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~  312 (337)
T 1gxr_A          256 PDKYQLHLHES--CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC  312 (337)
T ss_dssp             SCEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             CCeEEEcCCcc--ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEE
Confidence            55567777877  78999999999999884 68999999987 7777666788888775

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=1.7e-24  Score=220.87  Aligned_cols=239  Identities=11%  Similarity=0.009  Sum_probs=178.3

Q ss_pred             CcEEEEEccCcceEEEEcCCCCC--c-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc------Cc
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAA--S-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF------SQ  333 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~--~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~------~~  333 (540)
                      ++..+++++.|++|++|+..+..  . ....+|...+    ..+.+++|+.++++++.+... ..+.+....      ..
T Consensus        19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~~~~~dg~i-~vwd~~~~~~~~~~~~~   93 (372)
T 1k8k_C           19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQV----TGVDWAPDSNRIVTCGTDRNA-YVWTLKGRTWKPTLVIL   93 (372)
T ss_dssp             TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCE----EEEEEETTTTEEEEEETTSCE-EEEEEETTEEEEEEECC
T ss_pred             CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcc----cEEEEeCCCCEEEEEcCCCeE-EEEECCCCeeeeeEEee
Confidence            33348999999999999987763  2 2233455333    357789999877776544332 222221110      01


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ...-.+.+++|+|+++. |++|+.|+.|++||++.++.....           .....+|...|++++|+|    ++++|
T Consensus        94 ~~~~~v~~~~~~~~~~~-l~~~~~d~~v~i~d~~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~----~~~~l  157 (372)
T 1k8k_C           94 RINRAARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWVC-----------KHIKKPIRSTVLSLDWHP----NSVLL  157 (372)
T ss_dssp             CCSSCEEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEEE-----------EEECTTCCSCEEEEEECT----TSSEE
T ss_pred             cCCCceeEEEECCCCCE-EEEEeCCCEEEEEEecCCCcceee-----------eeeecccCCCeeEEEEcC----CCCEE
Confidence            11223788899999995 789999999999999987632211           011157899999999999    99999


Q ss_pred             EEEeCCCcEEEEEcCCCccccc------C-CCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         414 ASGSADCTVLLWHWNARTQSIV------G-ETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~------~-~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                      ++|+.|+.|++||++.......      + ....++++..+.+|...|.+++|+|++.+|++++.||.|++|+. +++.+
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            9999999999999753211000      0 01124677888899999999999999999999999999999976 88999


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCC
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  524 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g  524 (540)
                      ..+..|..  +|.+++|+|+|++|+++.|+.|++|+++.
T Consensus       238 ~~~~~~~~--~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          238 ATLASETL--PLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EEEECSSC--CEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             EEEccCCC--CeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            99998887  78999999999999999999999999865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=2.8e-24  Score=236.49  Aligned_cols=231  Identities=12%  Similarity=0.010  Sum_probs=174.2

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC---cC--
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN---FS--  332 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~---~~--  332 (540)
                      .+.+++..+++++ +.+|++|+..++... ...+|.+.|    ..+.|++|+.++++|+.+... ..+.+...   ..  
T Consensus        25 ~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v----~~~~~spdg~~lasg~~d~~v-~lWd~~~~~~~~~~~   98 (611)
T 1nr0_A           25 GNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQT----TVAKTSPSGYYCASGDVHGNV-RIWDTTQTTHILKTT   98 (611)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCE----EEEEECTTSSEEEEEETTSEE-EEEESSSTTCCEEEE
T ss_pred             eeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCce----EEEEECCCCcEEEEEeCCCCE-EEeECCCCcceeeEe
Confidence            3444444588877 569999999765433 344676544    357899999998888654332 33332110   00  


Q ss_pred             -cceeeEEEEEEEecCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         333 -QKLRVRHNCFVTTVDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       333 -~~~~v~~~~~~~spdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                       ......+.+++|+|+|+. |++++.+    +.|++||  +++....+               .+|.+.|++++|+|   
T Consensus        99 ~~~~~~~v~~v~fs~dg~~-l~~~~~~~~~~~~v~~wd--~~~~~~~l---------------~gh~~~v~~v~f~p---  157 (611)
T 1nr0_A           99 IPVFSGPVKDISWDSESKR-IAAVGEGRERFGHVFLFD--TGTSNGNL---------------TGQARAMNSVDFKP---  157 (611)
T ss_dssp             EECSSSCEEEEEECTTSCE-EEEEECCSSCSEEEEETT--TCCBCBCC---------------CCCSSCEEEEEECS---
T ss_pred             ecccCCceEEEEECCCCCE-EEEEECCCCceeEEEEee--CCCCccee---------------cCCCCCceEEEECC---
Confidence             011224789999999996 4555544    3677777  45555555               79999999999999   


Q ss_pred             CCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         408 TADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       408 ~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                       ++. .|++|+.|++|++||...           .++...+.+|...|.+++|+|+|++|++|+.|++|++|+. +++.+
T Consensus       158 -~~~~~l~s~s~D~~v~lwd~~~-----------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~  225 (611)
T 1nr0_A          158 -SRPFRIISGSDDNTVAIFEGPP-----------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT  225 (611)
T ss_dssp             -SSSCEEEEEETTSCEEEEETTT-----------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             -CCCeEEEEEeCCCeEEEEECCC-----------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence             776 699999999999999765           3567889999999999999999999999999999999985 88888


Q ss_pred             EEec-------CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEee
Q psy1242         486 RSLD-------PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       486 ~~l~-------~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~  530 (540)
                      ..+.       +|.+  .|.+++|+|+|++|++ +.|++|++||+. ++.+..+
T Consensus       226 ~~~~~~~~~~~~h~~--~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          226 GVFEDDSLKNVAHSG--SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             EECBCTTSSSCSSSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeeccccccccccCC--CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence            8884       6777  7899999999999998 568999999987 6555443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.7e-24  Score=216.27  Aligned_cols=239  Identities=15%  Similarity=0.167  Sum_probs=161.5

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCC--------cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAA--------SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL  327 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~--------~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~  327 (540)
                      ..+.+.+++..+++++.|++|++|+.....        .....+|.+.|    ..+.|++|+.++++|+.+... ..+.+
T Consensus        62 ~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V----~~v~~sp~g~~las~s~D~~v-~iwd~  136 (330)
T 2hes_X           62 RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV----KGVAWSNDGYYLATCSRDKSV-WIWET  136 (330)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE----EEEEECTTSCEEEEEETTSCE-EEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE----EEEEECCCCCEEEEEeCCCEE-EEEec
Confidence            334444455559999999999999985321        11123465443    357899999888877654433 22322


Q ss_pred             CCC---cC-----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC--eEEEEEecccceeeeeeEEEeeccCcce
Q psy1242         328 GDN---FS-----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA--RIVQIIFGHYGVVTSRIVQIIFGHYGVV  397 (540)
Q Consensus       328 ~~~---~~-----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g--~~~~~l~~~~~~v~~~~~~~l~~h~~~V  397 (540)
                      ...   ..     ......+.+++|+|+++. |++|+.|++|++||..++  +++..+               .+|.+.|
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~iW~~~~~~~~~~~~~---------------~~h~~~v  200 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSEAL-LASSSYDDTVRIWKDYDDDWECVAVL---------------NGHEGTV  200 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEE---------------CCCSSCE
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCCCeeEEEEc---------------cCCCCcE
Confidence            110   00     011223788999999995 799999999999998766  455555               8999999


Q ss_pred             EEEEeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEeCCCc
Q psy1242         398 TCLSRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGSQLGP  474 (540)
Q Consensus       398 t~l~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~  474 (540)
                      .+++|+|    +  +..|++|+.|++|++||+.......   .....+...+.+ |...|.+++|++++ +|++++.||+
T Consensus       201 ~~~~~~~----~~~~~~l~s~s~D~~v~iw~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~  272 (330)
T 2hes_X          201 WSSDFDK----TEGVFRLCSGSDDSTVRVWKYMGDDEDD---QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV  272 (330)
T ss_dssp             EEEEECC----SSSSCEEEEEETTSCEEEEEEEEECTTS---CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC
T ss_pred             EEEEecC----CCCeeEEEEEeCCCeEEEEEecCCCccc---cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE
Confidence            9999999    6  6789999999999999986532100   000123455555 99999999999765 8999999999


Q ss_pred             EEEEeC-CCc--EEEE-ecCCCCCCCceEEEEee--CCCEEEE-ecCCeEEEEecCC
Q psy1242         475 VLVHTT-FGD--LLRS-LDPPSGFASPESVVMSR--EGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       475 v~iw~~-~g~--~~~~-l~~~~~~~~v~~l~fsp--dg~~l~s-~~dg~I~lw~~~g  524 (540)
                      |++|+. +++  .+.. +.+|... .|.+++|+|  ++++|++ +.||+|++|+++.
T Consensus       273 v~iw~~~~~~~~~~~~~~~~h~~~-~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          273 LAVYEEVDGEWKVFAKRALCHGVY-EINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEEETTEEEEEEEESCTTTTS-CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEcCCCceEEEeccccccccc-eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            999976 553  3333 3455431 589999999  6888887 5789999999863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.93  E-value=6.7e-24  Score=236.79  Aligned_cols=222  Identities=22%  Similarity=0.249  Sum_probs=170.7

Q ss_pred             eecccceeeecCC-cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMP-SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~-~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |...++.+.++++ ..+++|+|.|++|++|+........                                ....+.+.+
T Consensus       381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------------------------------~~~~~~~~~  428 (694)
T 3dm0_A          381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------------------------------GVAQRRLTG  428 (694)
T ss_dssp             CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------------------------------CEEEEEEEC
T ss_pred             CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------------------------------ccccceecC
Confidence            3333344444432 3469999999999999975421000                                001111222


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                      +..     .+.+++|+|++++ |++|+.|++|+|||+.+++.+..+               .+|.+.|++++|+|    +
T Consensus       429 h~~-----~v~~v~~s~~g~~-l~sgs~Dg~v~vwd~~~~~~~~~~---------------~~h~~~v~~~~~s~----~  483 (694)
T 3dm0_A          429 HSH-----FVEDVVLSSDGQF-ALSGSWDGELRLWDLAAGVSTRRF---------------VGHTKDVLSVAFSL----D  483 (694)
T ss_dssp             CSS-----CEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE---------------ECCSSCEEEEEECT----T
T ss_pred             CCC-----cEEEEEECCCCCE-EEEEeCCCcEEEEECCCCcceeEE---------------eCCCCCEEEEEEeC----C
Confidence            211     2678889999995 799999999999999999988888               89999999999999    9


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL--GLVVSGSQLGPVLVHTT-FGDLLR  486 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg--~~lasgs~Dg~v~iw~~-~g~~~~  486 (540)
                      +++|+||+.|++|++||.......        .......+|...|.|++|+|++  ..+++|+.||+|++|+. ++++..
T Consensus       484 ~~~l~s~s~D~~i~iwd~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~  555 (694)
T 3dm0_A          484 NRQIVSASRDRTIKLWNTLGECKY--------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS  555 (694)
T ss_dssp             SSCEEEEETTSCEEEECTTSCEEE--------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCcce--------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE
Confidence            999999999999999997542100        0011125789999999999987  58999999999999976 778889


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      .+.+|.+  .|.+++|+|+|++|+++ .||.|++||+. ++.+..+.+...|.++
T Consensus       556 ~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~  608 (694)
T 3dm0_A          556 TLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL  608 (694)
T ss_dssp             EECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEE
T ss_pred             EEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEE
Confidence            9999988  78999999999999984 68999999987 7777777766667665

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=1.2e-23  Score=211.82  Aligned_cols=255  Identities=14%  Similarity=0.129  Sum_probs=185.8

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc------cCCCCcCCCCCCCCCcccc
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI------QSPSYAETPGSPPGNLPLT  306 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~------~~~~~~~~v~~~~~~~~~s  306 (540)
                      .|.+.+..+.|+|+.                ..+++|||.|++|++||+......      ...+|.+.|    ..+.|+
T Consensus        36 GH~~~V~~v~~sp~~----------------~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V----~~~~~s   95 (340)
T 4aow_A           36 GHNGWVTQIATTPQF----------------PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV----SDVVIS   95 (340)
T ss_dssp             CCSSCEEEEEECTTC----------------TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCE----EEEEEC
T ss_pred             CccCCEEEEEEeCCC----------------CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCE----EEEEEC
Confidence            355566666666542                234999999999999998764421      123455333    357789


Q ss_pred             CCCCeeeccCCCCCCccccccCCCcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccccee
Q psy1242         307 LDPILTHPTSNNNAPVPKRHLGDNFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVV  382 (540)
Q Consensus       307 ~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v  382 (540)
                      +|+.++++++.+.... .+.......    ........+..+++++.. |++|+.|+.+++||+.........       
T Consensus        96 ~dg~~l~s~~~d~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~-------  166 (340)
T 4aow_A           96 SDGQFALSGSWDGTLR-LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQ-------  166 (340)
T ss_dssp             TTSSEEEEEETTSEEE-EEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEEC-------
T ss_pred             CCCCEEEEEcccccce-EEeecccceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEEE-------
Confidence            9998888775443321 111111100    001112566677899985 799999999999998865543222       


Q ss_pred             eeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242         383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE  462 (540)
Q Consensus       383 ~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd  462 (540)
                             +.+|.+.|.+++|++.  .....+++++.|++|++||++.           .+++..+.+|...|++++|+|+
T Consensus       167 -------~~~~~~~v~~~~~~~~--~~~~~~~s~~~d~~i~i~d~~~-----------~~~~~~~~~h~~~v~~~~~s~~  226 (340)
T 4aow_A          167 -------DESHSEWVSCVRFSPN--SSNPIIVSCGWDKLVKVWNLAN-----------CKLKTNHIGHTGYLNTVTVSPD  226 (340)
T ss_dssp             -------SSSCSSCEEEEEECSC--SSSCEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECTT
T ss_pred             -------eccccCcccceEEccC--CCCcEEEEEcCCCEEEEEECCC-----------CceeeEecCCCCcEEEEEECCC
Confidence                   2689999999999882  1346789999999999999876           4577889999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcE-EEee----------
Q psy1242         463 LGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNR-LRHE----------  530 (540)
Q Consensus       463 g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~-l~~~----------  530 (540)
                      +++|++|+.||+|++|+. +++.+..+..+.   .|.+++|+|++.+++++.|+.|++|++++.. +..+          
T Consensus       227 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  303 (340)
T 4aow_A          227 GSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSK  303 (340)
T ss_dssp             SSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------
T ss_pred             CCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeecc
Confidence            999999999999999976 777888887654   5899999999999999999999999998543 3322          


Q ss_pred             ecCCcceec
Q psy1242         531 SHNDNLQKT  539 (540)
Q Consensus       531 ~~~~~V~~v  539 (540)
                      .|...|++|
T Consensus       304 ~h~~~v~~l  312 (340)
T 4aow_A          304 AEPPQCTSL  312 (340)
T ss_dssp             CCCCCEEEE
T ss_pred             CCCCCEEEE
Confidence            256667665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=2.8e-25  Score=223.93  Aligned_cols=242  Identities=14%  Similarity=0.079  Sum_probs=169.0

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCc---ccCCCCcCCCCCCCCCccccC--
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTL--  307 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~---~~~~~~~~~v~~~~~~~~~s~--  307 (540)
                      .|.+.+..+.|++++..                 ++|+|.|++|++||...+..   ....+|.+.|.    .+.|++  
T Consensus        11 ~H~~~V~~v~~s~~g~~-----------------lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~----~v~~~~~~   69 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTR-----------------LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW----QVAWAHPM   69 (316)
T ss_dssp             ---CCEEEEEECGGGCE-----------------EEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE----EEEECCGG
T ss_pred             cccCeEEEeeEcCCCCE-----------------EEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE----EEEeCCCC
Confidence            34555666666655544                 99999999999999875431   23346765543    455654  


Q ss_pred             CCCeeeccCCCCCCccccccCCC-cC-----cceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCeEEEEEeccc
Q psy1242         308 DPILTHPTSNNNAPVPKRHLGDN-FS-----QKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARIVQIIFGHY  379 (540)
Q Consensus       308 D~~l~~~g~~~~~~~~~~~~~~~-~~-----~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~  379 (540)
                      ++.++++|+.+... ..+.+... ..     ....-.+.+++|+|+  +. +|++|+.|++|++||++++......    
T Consensus        70 ~~~~l~s~s~D~~v-~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~----  143 (316)
T 3bg1_A           70 YGNILASCSYDRKV-IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVK----  143 (316)
T ss_dssp             GSSCEEEEETTSCE-EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEEC----
T ss_pred             CCCEEEEEECCCEE-EEEECCCCcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCccee----
Confidence            36666666543332 22322211 00     011223678888998  66 5799999999999999876432111    


Q ss_pred             ceeeeeeEEEeeccCcceEEEEeccCccCC-----------------CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCc
Q psy1242         380 GVVTSRIVQIIFGHYGVVTCLSRSECNITA-----------------DCFIASGSADCTVLLWHWNARTQSIVGETDTPT  442 (540)
Q Consensus       380 ~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-----------------g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~  442 (540)
                              ..+.+|...|.+++|+|    +                 +++|++|+.|++|++||++....        .+
T Consensus       144 --------~~~~~h~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--------~~  203 (316)
T 3bg1_A          144 --------KINNAHTIGCNAVSWAP----AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--------WK  203 (316)
T ss_dssp             --------CBTTSSSSCBCCCEECC----CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--------EE
T ss_pred             --------eeeccccCCcceEEEcc----ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--------cc
Confidence                    11268999999999998    5                 46899999999999999864210        13


Q ss_pred             ceEEeccCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCCC----c-EEEEecCCCCCCCceEEEEeeCCCEEEE-e
Q psy1242         443 PRATLTGHEQPVTSVAISAEL----GLVVSGSQLGPVLVHTTFG----D-LLRSLDPPSGFASPESVVMSREGVIVVN-Y  512 (540)
Q Consensus       443 ~~~~l~~h~~~V~~v~~spdg----~~lasgs~Dg~v~iw~~~g----~-~~~~l~~~~~~~~v~~l~fspdg~~l~s-~  512 (540)
                      ++..+.+|...|.+++|+|++    .+|++|+.||+|++|+...    . ....+..|..  .|.+++|+|+|++|++ +
T Consensus       204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~--~v~~v~~sp~g~~las~~  281 (316)
T 3bg1_A          204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND--VVWHVSWSITANILAVSG  281 (316)
T ss_dssp             EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS--CEEEEEECTTTCCEEEEE
T ss_pred             eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC--cEEEEEEcCCCCEEEEEc
Confidence            567788999999999999987    7899999999999997532    1 1223445565  7899999999999987 5


Q ss_pred             cCCeEEEEecC
Q psy1242         513 ERGHIAAFTMN  523 (540)
Q Consensus       513 ~dg~I~lw~~~  523 (540)
                      .|+.|++|+.+
T Consensus       282 ~D~~v~lw~~~  292 (316)
T 3bg1_A          282 GDNKVTLWKES  292 (316)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence            68999999975

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-23  Score=217.59  Aligned_cols=249  Identities=14%  Similarity=0.048  Sum_probs=183.5

Q ss_pred             eeeecCCcE-EEEEccCcceEEEEcC----CCCCc------ccCCCCcCC-------CCCCCCCccccCCCCeeeccCCC
Q psy1242         257 YVTLHMPSV-VTVTANHQFAINRWNP----DYAAS------IQSPSYAET-------PGSPPGNLPLTLDPILTHPTSNN  318 (540)
Q Consensus       257 ~~~~~~~~~-~lvs~s~D~tv~~W~~----~~~~~------~~~~~~~~~-------v~~~~~~~~~s~D~~l~~~g~~~  318 (540)
                      .+.+.+++. .+++++.|++|++|+.    .++..      .....+...       -......+.|++|+.++++++.+
T Consensus        50 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  129 (425)
T 1r5m_A           50 SSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN  129 (425)
T ss_dssp             EEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT
T ss_pred             EEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC
Confidence            333444444 5999999999999999    65541      111111100       01133467899999888777544


Q ss_pred             CCCccccccCCCcC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccce--------------
Q psy1242         319 NAPVPKRHLGDNFS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGV--------------  381 (540)
Q Consensus       319 ~~~~~~~~~~~~~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~--------------  381 (540)
                      .... .+.......   ......+.+++|+|+++. |++++.|+.|++||+.+++.+..+..+...              
T Consensus       130 g~i~-i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (425)
T 1r5m_A          130 GELR-LWNKTGALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS  207 (425)
T ss_dssp             SCEE-EEETTSCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred             CeEE-EEeCCCCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence            3332 221111100   011223788899999995 688999999999999999988887665543              


Q ss_pred             -eee--------------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccc
Q psy1242         382 -VTS--------------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSI  434 (540)
Q Consensus       382 -v~~--------------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~  434 (540)
                       +.+                          ..+..+.+|...|++++|+|    ++++|++++.|+.|++||++.     
T Consensus       208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~i~i~d~~~-----  278 (425)
T 1r5m_A          208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND----TNKLLLSASDDGTLRIWHGGN-----  278 (425)
T ss_dssp             CBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET----TTTEEEEEETTSCEEEECSSS-----
T ss_pred             eeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC----CCCEEEEEcCCCEEEEEECCC-----
Confidence             211                          33456678999999999999    999999999999999999876     


Q ss_pred             cCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-
Q psy1242         435 VGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-  512 (540)
Q Consensus       435 ~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-  512 (540)
                            .+++..+.+|...|.+++|+|++ .+++++.||.|++|+. +++.+..+..|..  .|.+++|+|+|++|+++ 
T Consensus       279 ------~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          279 ------GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             ------BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEECTTSSEEEEEE
T ss_pred             ------CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEEcCCCCEEEEEE
Confidence                  35678888999999999999999 9999999999999986 7888999988887  78999999999999985 


Q ss_pred             cCCeEEEEecC-Cc
Q psy1242         513 ERGHIAAFTMN-GN  525 (540)
Q Consensus       513 ~dg~I~lw~~~-g~  525 (540)
                      .+|.|++|+++ ++
T Consensus       350 ~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          350 MDGQVNVYDLKKLN  363 (425)
T ss_dssp             TTSCEEEEECHHHH
T ss_pred             CCCeEEEEECCCCc
Confidence            58999999987 55

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.92  E-value=2.3e-23  Score=210.09  Aligned_cols=199  Identities=14%  Similarity=0.202  Sum_probs=158.1

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  334 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~  334 (540)
                      +....+.+++..++|+|.|++|++||..++...                                     ..+.++.   
T Consensus        68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~-------------------------------------~~~~~h~---  107 (319)
T 3frx_A           68 VQDCTLTADGAYALSASWDKTLRLWDVATGETY-------------------------------------QRFVGHK---  107 (319)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-------------------------------------EEEECCS---
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCCee-------------------------------------EEEccCC---
Confidence            344455556666999999999999998543211                                     0111111   


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc--CCCcE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI--TADCF  412 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~--~dg~~  412 (540)
                        ..+.+++|+|++.. |++|+.|++|++||++ ++.+..+               .+|.+.|.+++++|...  .++..
T Consensus       108 --~~v~~~~~~~~~~~-l~s~s~D~~i~vwd~~-~~~~~~~---------------~~h~~~v~~~~~~~~~~~~~~~~~  168 (319)
T 3frx_A          108 --SDVMSVDIDKKASM-IISGSRDKTIKVWTIK-GQCLATL---------------LGHNDWVSQVRVVPNEKADDDSVT  168 (319)
T ss_dssp             --SCEEEEEECTTSCE-EEEEETTSCEEEEETT-SCEEEEE---------------CCCSSCEEEEEECCC------CCE
T ss_pred             --CcEEEEEEcCCCCE-EEEEeCCCeEEEEECC-CCeEEEE---------------eccCCcEEEEEEccCCCCCCCccE
Confidence              12678889999995 7999999999999997 5666666               78999999999998210  02348


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      |++|+.|++|++||++.           .++...+.+|...|.+++|+|++++|++|+.||+|++|+. +++.+..+..+
T Consensus       169 l~s~~~d~~i~~wd~~~-----------~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  237 (319)
T 3frx_A          169 IISAGNDKMVKAWNLNQ-----------FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ  237 (319)
T ss_dssp             EEEEETTSCEEEEETTT-----------TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred             EEEEeCCCEEEEEECCc-----------chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            99999999999999876           3567788999999999999999999999999999999976 77888888765


Q ss_pred             CCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcE
Q psy1242         492 SGFASPESVVMSREGVIVVNYERGHIAAFTMNGNR  526 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~  526 (540)
                      .   .|.+++|+|+|.+|+++.++.+++|+++...
T Consensus       238 ~---~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~  269 (319)
T 3frx_A          238 D---EVFSLAFSPNRYWLAAATATGIKVFSLDPQY  269 (319)
T ss_dssp             S---CEEEEEECSSSSEEEEEETTEEEEEEETTEE
T ss_pred             C---cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCe
Confidence            4   6899999999999999888889999987443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=2.5e-23  Score=208.50  Aligned_cols=222  Identities=15%  Similarity=0.157  Sum_probs=166.3

Q ss_pred             ccccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCe
Q psy1242         232 TVLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPIL  311 (540)
Q Consensus       232 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l  311 (540)
                      ..|.+.+..+.|++++..                 +++++.|++|++|+........                       
T Consensus         8 ~gH~~~v~~~~~~~~~~~-----------------l~~~~~dg~i~iw~~~~~~~~~-----------------------   47 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRH-----------------VATCSSDQHIKVFKLDKDTSNW-----------------------   47 (351)
T ss_dssp             CCCSSCEEEEEECSSSSE-----------------EEEEETTSEEEEEEECSSSCCE-----------------------
T ss_pred             cccccceeEEEEcCCCCE-----------------EEEeeCCCeEEEEECCCCCCcc-----------------------
Confidence            345666777777776655                 9999999999999975421100                       


Q ss_pred             eeccCCCCCCccccccCCCcCcceeeEEEEEEEec--CCCEEEEEEecCCcEEEEEccCC---------eEEEEEecccc
Q psy1242         312 THPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV--DSRFLLACGFWDNSFRVFSTDNA---------RIVQIIFGHYG  380 (540)
Q Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~sp--dg~~llasgs~Dgsv~iwd~~~g---------~~~~~l~~~~~  380 (540)
                                .....+..+     .-.+.+++|+|  +++ +|++|+.||+|++||++++         +.+..+     
T Consensus        48 ----------~~~~~~~~~-----~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-----  106 (351)
T 3f3f_A           48 ----------ELSDSWRAH-----DSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-----  106 (351)
T ss_dssp             ----------EEEEEEECC-----SSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-----
T ss_pred             ----------eecceeccC-----CCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeee-----
Confidence                      000111111     11267888898  588 4799999999999999877         344455     


Q ss_pred             eeeeeeEEEeeccCcceEEEEeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccC----------------------
Q psy1242         381 VVTSRIVQIIFGHYGVVTCLSRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVG----------------------  436 (540)
Q Consensus       381 ~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~----------------------  436 (540)
                                .+|.+.|++++|+|    +  +.+|++|+.|++|++||++........                      
T Consensus       107 ----------~~~~~~v~~~~~~~----~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (351)
T 3f3f_A          107 ----------NDSKGSLYSVKFAP----AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC  172 (351)
T ss_dssp             ----------CCCSSCEEEEEECC----GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred             ----------cccCCceeEEEEcC----CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence                      78999999999999    8  999999999999999998754311000                      


Q ss_pred             ---------C----------------CCCC--cceEEeccCCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeC-CC--
Q psy1242         437 ---------E----------------TDTP--TPRATLTGHEQPVTSVAISAEL----GLVVSGSQLGPVLVHTT-FG--  482 (540)
Q Consensus       437 ---------~----------------~~~~--~~~~~l~~h~~~V~~v~~spdg----~~lasgs~Dg~v~iw~~-~g--  482 (540)
                               .                ....  .++..+.+|...|++++|+|++    .+|++|+.||.|++|+. ++  
T Consensus       173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~  252 (351)
T 3f3f_A          173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLS  252 (351)
T ss_dssp             EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-
T ss_pred             EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcC
Confidence                     0                0011  1256678899999999999998    89999999999999975 32  


Q ss_pred             --------------------------------------------cEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeE
Q psy1242         483 --------------------------------------------DLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHI  517 (540)
Q Consensus       483 --------------------------------------------~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I  517 (540)
                                                                  +.+..+.+|..  .|.+++|+|+|++|++ +.||.|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~dg~v  330 (351)
T 3f3f_A          253 PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG--EVWSVSWNLTGTILSSAGDDGKV  330 (351)
T ss_dssp             --------------------------------------CCSEEEEEEEEECTTSS--CEEEEEECSSSCCEEEEETTSCE
T ss_pred             ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc--cEEEEEEcCCCCEEEEecCCCcE
Confidence                                                        66778888888  7999999999999988 568999


Q ss_pred             EEEecC-CcEEEee
Q psy1242         518 AAFTMN-GNRLRHE  530 (540)
Q Consensus       518 ~lw~~~-g~~l~~~  530 (540)
                      ++|+++ ++.+..+
T Consensus       331 ~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          331 RLWKATYSNEFKCM  344 (351)
T ss_dssp             EEEEECTTSCEEEE
T ss_pred             EEEecCcCcchhhe
Confidence            999998 5555544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.9e-23  Score=207.48  Aligned_cols=241  Identities=16%  Similarity=0.141  Sum_probs=177.9

Q ss_pred             EEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC---------CCcCcce
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG---------DNFSQKL  335 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~---------~~~~~~~  335 (540)
                      .+++++.|++|++|+..+..... ...|.+    ....+.+++++.++++++.+.... .+.+.         ....+. 
T Consensus        31 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~-~~~~~~~~~~~~~~~~~~~~-  104 (313)
T 3odt_A           31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQG----FLNSVCYDSEKELLLFGGKDTMIN-GVPLFATSGEDPLYTLIGHQ-  104 (313)
T ss_dssp             EEEEEETTSEEEEEEESSSEEEEEEEECSS----CEEEEEEETTTTEEEEEETTSCEE-EEETTCCTTSCC-CEECCCS-
T ss_pred             EEEEEEcCCcEEEEECCCCEEEEEeecCCc----cEEEEEECCCCCEEEEecCCCeEE-EEEeeecCCCCcccchhhcc-
Confidence            48999999999999987654332 223432    233577899998887775443321 11111         111122 


Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------eeEEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------RIVQI  389 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------~~~~~  389 (540)
                       ..+.++++  +++ ++++|+.|+.|++||  .++....+..|...+.+                          .....
T Consensus       105 -~~i~~~~~--~~~-~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  178 (313)
T 3odt_A          105 -GNVCSLSF--QDG-VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKT  178 (313)
T ss_dssp             -SCEEEEEE--ETT-EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEE
T ss_pred             -cCEEEEEe--cCC-EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEE
Confidence             23566666  566 478999999999999  57777777777766632                          33455


Q ss_pred             eec-cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242         390 IFG-HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       390 l~~-h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~las  468 (540)
                      +.. |...|++++|+|    ++. +++|+.|+.|++||++.           ++++..+.+|...|++++|+|++ .+++
T Consensus       179 ~~~~~~~~i~~~~~~~----~~~-~~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~-~l~~  241 (313)
T 3odt_A          179 FSGIHNDVVRHLAVVD----DGH-FISCSNDGLIKLVDMHT-----------GDVLRTYEGHESFVYCIKLLPNG-DIVS  241 (313)
T ss_dssp             ECSSCSSCEEEEEEEE----TTE-EEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEECTTS-CEEE
T ss_pred             EeccCcccEEEEEEcC----CCe-EEEccCCCeEEEEECCc-----------hhhhhhhhcCCceEEEEEEecCC-CEEE
Confidence            555 899999999999    887 99999999999999876           46788899999999999999999 5899


Q ss_pred             EeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeeecCCcce
Q psy1242         469 GSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHESHNDNLQ  537 (540)
Q Consensus       469 gs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V~  537 (540)
                      ++.||.|++|+. +++++..+..|..  .|.+++|+|+|++++++.||.|++|+++ ++.+......+.+.
T Consensus       242 ~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  310 (313)
T 3odt_A          242 CGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRWASEDEIKGELR  310 (313)
T ss_dssp             EETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSCEEEEETTSCEEEEESCGGGCCC---------
T ss_pred             EecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCCEEEEeCCCcEEEEeCCCCceeehhhhhhhhh
Confidence            999999999976 8899999998887  7899999999998888899999999998 55555554444443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.6e-24  Score=224.53  Aligned_cols=236  Identities=14%  Similarity=0.149  Sum_probs=170.5

Q ss_pred             eeecC-CcEEEEEccCcceEEEEcCCC---CC---cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC--
Q psy1242         258 VTLHM-PSVVTVTANHQFAINRWNPDY---AA---SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG--  328 (540)
Q Consensus       258 ~~~~~-~~~~lvs~s~D~tv~~W~~~~---~~---~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~--  328 (540)
                      ..+.+ ++..++|++.|++|++|+...   +.   ......|.+.|    ..+.+++++..+++++.+... ..+.+.  
T Consensus        69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~s~s~dg~i-~vwd~~~~  143 (437)
T 3gre_A           69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV----TQITMIPNFDAFAVSSKDGQI-IVLKVNHY  143 (437)
T ss_dssp             EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCE----EEEEECTTSSEEEEEETTSEE-EEEEEEEE
T ss_pred             EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCE----EEEEEeCCCCEEEEEeCCCEE-EEEEeccc
Confidence            33444 445599999999999999765   22   11112344333    357788888877776544332 222221  


Q ss_pred             --CC--------------cC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEE
Q psy1242         329 --DN--------------FS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQI  389 (540)
Q Consensus       329 --~~--------------~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~  389 (540)
                        +.              +.   ....+......+++++. ++++|+.|++|++||+++++.+..+              
T Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--------------  208 (437)
T 3gre_A          144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQII--------------  208 (437)
T ss_dssp             EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEE--------------
T ss_pred             cCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEE--------------
Confidence              00              00   11112222223667888 5799999999999999999998888              


Q ss_pred             eec--cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcC----C
Q psy1242         390 IFG--HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISA----E  462 (540)
Q Consensus       390 l~~--h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~sp----d  462 (540)
                       .+  |.+.|++++|+|    ++.+|++|+.||+|++||++.           ++++..+. +|...|++++|+|    +
T Consensus       209 -~~~~h~~~v~~~~~s~----~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          209 -ENSPRHGAVSSICIDE----ECCVLILGTTRGIIDIWDIRF-----------NVLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             -ECCGGGCCEEEEEECT----TSCEEEEEETTSCEEEEETTT-----------TEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             -ccCCCCCceEEEEECC----CCCEEEEEcCCCeEEEEEcCC-----------ccEEEEEecCCCCceEEEEeccccCCC
Confidence             55  889999999999    999999999999999999876           45677775 7888999996665    5


Q ss_pred             CCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCC------------------------CCceEEEEeeCCCEEEEe-cCCe
Q psy1242         463 LGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGF------------------------ASPESVVMSREGVIVVNY-ERGH  516 (540)
Q Consensus       463 g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~------------------------~~v~~l~fspdg~~l~s~-~dg~  516 (540)
                      +.+|++|+.||+|++|+. +++++..+.+|...                        ..|.+++|+ ++++|+++ .|+.
T Consensus       273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~  351 (437)
T 3gre_A          273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS  351 (437)
T ss_dssp             EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred             ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence            779999999999999987 78888888755321                        147889999 77888885 5899


Q ss_pred             EEEEecC-CcEEEee
Q psy1242         517 IAAFTMN-GNRLRHE  530 (540)
Q Consensus       517 I~lw~~~-g~~l~~~  530 (540)
                      |++|++. ++.+..+
T Consensus       352 i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          352 IVMFSLNELSSSKAV  366 (437)
T ss_dssp             EEEEETTCGGGCEEE
T ss_pred             EEEEECCCcccceEE
Confidence            9999987 5544444

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.92  E-value=1.4e-23  Score=213.66  Aligned_cols=228  Identities=15%  Similarity=0.184  Sum_probs=164.4

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC----
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN----  330 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~----  330 (540)
                      ....+.++...++|++.|++|++||..++.... ..+|.+.|    ..+.|++|+..+++++.+... ..+.+...    
T Consensus        80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v----~~v~~sp~~~~l~s~~~d~~i-~~wd~~~~~~~~  154 (343)
T 2xzm_R           80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEV----YSVAFSPDNRQILSAGAEREI-KLWNILGECKFS  154 (343)
T ss_dssp             EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCE----EEEEECSSTTEEEEEETTSCE-EEEESSSCEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcE----EEEEECCCCCEEEEEcCCCEE-EEEeccCCceee
Confidence            334444555569999999999999998765433 33566444    357899999877776544333 22222110    


Q ss_pred             --cCcceeeEEEEEEEecCC----------CEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242         331 --FSQKLRVRHNCFVTTVDS----------RFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT  398 (540)
Q Consensus       331 --~~~~~~v~~~~~~~spdg----------~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt  398 (540)
                        ......-.+.+++|+|++          . ++++|+.|++|++||. .++....+               .+|...|+
T Consensus       155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~-~~~~~~~~---------------~~h~~~v~  217 (343)
T 2xzm_R          155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNT-NFQIRYTF---------------KAHESNVN  217 (343)
T ss_dssp             CCTTTSCSSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEET-TTEEEEEE---------------ECCSSCEE
T ss_pred             eecccCCCceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEcC-CCceeEEE---------------cCccccce
Confidence              001122237888889987          5 5799999999999995 45666666               78999999


Q ss_pred             EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         399 CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                      +++|+|    +|++|++|+.|++|++||+....          .+...+ .+...|.+++|+|++.+++++ .|+.|++|
T Consensus       218 ~~~~s~----~g~~l~sgs~dg~v~iwd~~~~~----------~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw  281 (343)
T 2xzm_R          218 HLSISP----NGKYIATGGKDKKLLIWDILNLT----------YPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIF  281 (343)
T ss_dssp             EEEECT----TSSEEEEEETTCEEEEEESSCCS----------SCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEE
T ss_pred             EEEECC----CCCEEEEEcCCCeEEEEECCCCc----------ccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEE
Confidence            999999    99999999999999999985321          233333 355679999999999887655 58889999


Q ss_pred             eC-CCcE--EEEec-----------CCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         479 TT-FGDL--LRSLD-----------PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       479 ~~-~g~~--~~~l~-----------~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      +. +++.  +..+.           +|..  .|.+++|+|+|++|++| .||.|++|+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          282 NLMTQSKAPVCTIEAEPITKAEGQKGKNP--QCTSLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             ESSSCCSCSEEECCCCSGGGBTTBCCSCC--CEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             EeCCCCCCceEEeecCcchhhhhhcCCCC--ceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence            75 4433  22443           4444  68999999999999884 68999999975

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.92  E-value=9e-24  Score=217.57  Aligned_cols=239  Identities=13%  Similarity=0.090  Sum_probs=169.6

Q ss_pred             EEEEEccCcceEEEEcCCCCCcccCC---CCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCCCcC------cc
Q psy1242         265 VVTVTANHQFAINRWNPDYAASIQSP---SYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFS------QK  334 (540)
Q Consensus       265 ~~lvs~s~D~tv~~W~~~~~~~~~~~---~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~~~------~~  334 (540)
                      ..+++++.|++|++|+..+.......   +|.+.|    ..+.|++ ++.++++++.+.. ...+.+.....      ..
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~  161 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAI----TGMKFNQFNTNQLFVSSIRGA-TTLRDFSGSVIQVFAKTDS  161 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBE----EEEEEETTEEEEEEEEETTTE-EEEEETTSCEEEEEECCCC
T ss_pred             CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCce----eEEEeCCCCCCEEEEEeCCCE-EEEEECCCCceEEEeccCC
Confidence            45999999999999999866543322   355333    3577888 6666666643322 22232221100      01


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FI  413 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l  413 (540)
                      ....+.+++|+|+++. |++|+.|+.|++||+ +++.+..+               .+|.+.|++++|+|    ++. +|
T Consensus       162 ~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~-~~~~~~~~---------------~~h~~~v~~~~~~~----~~~~~l  220 (383)
T 3ei3_B          162 WDYWYCCVDVSVSRQM-LATGDSTGRLLLLGL-DGHEIFKE---------------KLHKAKVTHAEFNP----RCDWLM  220 (383)
T ss_dssp             SSCCEEEEEEETTTTE-EEEEETTSEEEEEET-TSCEEEEE---------------ECSSSCEEEEEECS----SCTTEE
T ss_pred             CCCCeEEEEECCCCCE-EEEECCCCCEEEEEC-CCCEEEEe---------------ccCCCcEEEEEECC----CCCCEE
Confidence            1123788899999995 799999999999999 47777777               78999999999999    888 99


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      ++|+.|++|++||++.....       ..++..+ +|...|.+++|+| ++.+|++++.||.|++|+. +++.+..+..|
T Consensus       221 ~s~~~d~~i~iwd~~~~~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  292 (383)
T 3ei3_B          221 ATSSVDATVKLWDLRNIKDK-------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH  292 (383)
T ss_dssp             EEEETTSEEEEEEGGGCCST-------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred             EEEeCCCEEEEEeCCCCCcc-------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence            99999999999999863311       2345555 7999999999999 9999999999999999976 55555555433


Q ss_pred             C-------CCC--------CceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee---cCCccee
Q psy1242         492 S-------GFA--------SPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES---HNDNLQK  538 (540)
Q Consensus       492 ~-------~~~--------~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~---~~~~V~~  538 (540)
                      .       ..+        .+..++|+|+|++ .++.|+.|++||+. |+.+..+.   +.+.+.+
T Consensus       293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~  357 (383)
T 3ei3_B          293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISL  357 (383)
T ss_dssp             CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCE
T ss_pred             cccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEE
Confidence            2       100        2233555555555 33468999999986 88888775   4455554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.8e-23  Score=220.28  Aligned_cols=231  Identities=13%  Similarity=0.123  Sum_probs=163.5

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-cceee
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS-QKLRV  337 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~-~~~~v  337 (540)
                      .+.+++..+||+|.|++|+  ++...+..  .+|...|.    .+.|+|||..-.     ..... .+-...+. .+ .-
T Consensus        22 ~~SpDG~~iASas~D~TV~--d~~~~~~l--~gh~~~v~----~V~FsPdg~~~~-----~~~~~-~~~~~~~~~~~-~~   86 (588)
T 2j04_A           22 TWARDGTLYLTTFPDISIG--QPKYAKDI--NCNSKNLF----HVKEFPLEFENK-----LDFEL-AQQNGLLNSQP-VC   86 (588)
T ss_dssp             EECTTSCEEEECSSSEEEE--EECCCSCC--SSBGGGTE----EEEEECCCCCCT-----TTTSC-CCSSCSSTTSC-SC
T ss_pred             EECCCCCEEEEEcCCceee--ccccccee--cCCCccEE----EEEECCCCCcce-----EEEEe-CCCceEeecCC-CC
Confidence            3444455599999999999  65444322  35664443    467889883211     01110 01001111 11 23


Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-----ceEEEEeccCccCCCcE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-----VVTCLSRSECNITADCF  412 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-----~Vt~l~~sp~~~~dg~~  412 (540)
                      .+.+++|||||+. ||+++.||+|+|||.+.  ++..+               . |..     .|.+++|||    ||++
T Consensus        87 ~V~~vawSPdG~~-LAs~s~dg~V~iwd~~~--~l~~l---------------~-~~~~~~~~sv~svafSP----DG~~  143 (588)
T 2j04_A           87 YPRVCKPSPIDDW-MAVLSNNGNVSVFKDNK--MLTNL---------------D-SKGNLSSRTYHCFEWNP----IESS  143 (588)
T ss_dssp             CEEEEEECSSSSC-EEEEETTSCEEEEETTE--EEEEC---------------C-CSSCSTTTCEEEEEECS----SSSC
T ss_pred             cEEEEEECCCCCE-EEEEeCCCcEEEEeCCc--eeeec---------------c-CCCccccccEEEEEEcC----CCCE
Confidence            4889999999995 79999999999999653  44444               4 554     599999999    9999


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCC--cceEEe----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE--
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTP--TPRATL----TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL--  484 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~--~~~~~l----~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~--  484 (540)
                      |++|+.||+|+|||+..+...      ..  -.+.++    .+|.+.|.+++|+|+|  +++++.|++|++|+..+..  
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~------~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~  215 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSEN------TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ  215 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTT------CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred             EEEEcCCCEEEEEECCCCccc------cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence            999999999999998763210      00  025665    6788999999999999  8889999999999874432  


Q ss_pred             --EEEec-CCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEee--ecCCcceec
Q psy1242         485 --LRSLD-PPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE--SHNDNLQKT  539 (540)
Q Consensus       485 --~~~l~-~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~--~~~~~V~~v  539 (540)
                        .+++. +|..  .|.+++|+  |+.||++++++|++|++++..+...  .|.+.|..|
T Consensus       216 ~~~~tL~~~h~~--~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~v  271 (588)
T 2j04_A          216 PVSRMIQNASRR--KITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHII  271 (588)
T ss_dssp             CCEEEEECCCSS--CCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEE
T ss_pred             cceeeecccccC--cEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEE
Confidence              35674 6665  78999999  6899988889999999997666333  477777655

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.7e-23  Score=212.42  Aligned_cols=232  Identities=11%  Similarity=0.078  Sum_probs=175.3

Q ss_pred             CcEEEEEccCcceEEEEcCCCC-----CcccCCCCcCCCCCCCCCccccCC-CCeeeccCCCCCCccccccCCCc-----
Q psy1242         263 PSVVTVTANHQFAINRWNPDYA-----ASIQSPSYAETPGSPPGNLPLTLD-PILTHPTSNNNAPVPKRHLGDNF-----  331 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~-----~~~~~~~~~~~v~~~~~~~~~s~D-~~l~~~g~~~~~~~~~~~~~~~~-----  331 (540)
                      ++..+++++.|++|++|+....     .......|.+.|    ..+.|+++ +.++++++.+... ..+.+....     
T Consensus        78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~l~s~~~dg~v-~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV----KTVKFNAKQDNVLASGGNNGEI-FIWDMNKCTESPSN  152 (416)
T ss_dssp             SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCC----CEEEECSSSTTBEEEECSSSCE-EBCBTTTTSSCTTT
T ss_pred             CCCeEEEEccCCeEEEeecccccccccchhhccCCccce----EEEEEcCCCCCEEEEEcCCCeE-EEEECCCCcccccc
Confidence            3334999999999999999762     122334565443    35778887 7777666533322 222221110     


Q ss_pred             ----C----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242         332 ----S----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       332 ----~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s  403 (540)
                          .    ......+.+++|+|++..++++|+.|+.|++||+++++.+..+..+...         .+|...|++++|+
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~  223 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---------SGIKQQLSVVEWH  223 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---------SCCCCCEEEEEEC
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---------cccCCceEEEEEC
Confidence                0    1122246788899994446899999999999999999988888322111         2348899999999


Q ss_pred             cCccCCC-cEEEEEeCCC---cEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcC-CCCEEEEEeCCCcEEE
Q psy1242         404 ECNITAD-CFIASGSADC---TVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISA-ELGLVVSGSQLGPVLV  477 (540)
Q Consensus       404 p~~~~dg-~~l~sgs~Dg---tV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~sp-dg~~lasgs~Dg~v~i  477 (540)
                      |    ++ .+|++++.|+   .|++||++...          .++..+. +|...|++++|+| ++.+|++++.||.|++
T Consensus       224 ~----~~~~~l~~~~~d~~~~~i~~~d~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~  289 (416)
T 2pm9_A          224 P----KNSTRVATATGSDNDPSILIWDLRNAN----------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL  289 (416)
T ss_dssp             S----SCTTEEEEEECCSSSCCCCEEETTSTT----------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred             C----CCCCEEEEEECCCCCceEEEEeCCCCC----------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence            9    76 6999999999   99999987632          3566777 8999999999999 8999999999999999


Q ss_pred             EeC-CCcEEEEecCCCCCCCceEEEEeeCC-CEEEEe-cCCeEEEEecCC
Q psy1242         478 HTT-FGDLLRSLDPPSGFASPESVVMSREG-VIVVNY-ERGHIAAFTMNG  524 (540)
Q Consensus       478 w~~-~g~~~~~l~~~~~~~~v~~l~fspdg-~~l~s~-~dg~I~lw~~~g  524 (540)
                      |+. +++.+..+..|..  .|.+++|+|++ .+|+++ .|+.|++|+++.
T Consensus       290 wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          290 WNPESAEQLSQFPARGN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             ECSSSCCEEEEEECSSS--CCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             eeCCCCccceeecCCCC--ceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            976 8899999999888  78999999999 788884 589999999873

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.91  E-value=1.3e-23  Score=218.57  Aligned_cols=246  Identities=14%  Similarity=0.075  Sum_probs=177.3

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc----
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF----  331 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~----  331 (540)
                      +.+.+.+++..+++++.|+++++|+.............    .......+++|+.++++|+.+... ..+.+....    
T Consensus        60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~  134 (420)
T 3vl1_A           60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA----DYTAVDTAKLQMRRFILGTTEGDI-KVLDSNFNLQREI  134 (420)
T ss_dssp             TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC----CEEEEEEECSSSCEEEEEETTSCE-EEECTTSCEEEEE
T ss_pred             cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC----CceEEEEEecCCCEEEEEECCCCE-EEEeCCCcceeee
Confidence            34455566666999999999999998765433322111    111223567888777777544332 222221100    


Q ss_pred             CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         332 SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       332 ~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      -....-.+.+++|+|+++. |++|+.|++|++||+.+++.+..+               .+|.+.|++++|+|    +++
T Consensus       135 ~~~h~~~v~~~~~~~~~~~-l~s~s~d~~i~iwd~~~~~~~~~~---------------~~h~~~v~~~~~~~----~~~  194 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEA-LISSSQDMQLKIWSVKDGSNPRTL---------------IGHRATVTDIAIID----RGR  194 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCCCEEE---------------ECCSSCEEEEEEET----TTT
T ss_pred             cccccCccEEEEECCCCCE-EEEEeCCCeEEEEeCCCCcCceEE---------------cCCCCcEEEEEEcC----CCC
Confidence            0111223788999999995 799999999999999999888887               78999999999999    999


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc---CCCCE---------------------EEEEEcCCCCEEE
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG---HEQPV---------------------TSVAISAELGLVV  467 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---h~~~V---------------------~~v~~spdg~~la  467 (540)
                      +|++|+.|++|++||++.           ++++..+..   |...|                     .+++|+|++++|+
T Consensus       195 ~l~s~~~d~~v~iwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (420)
T 3vl1_A          195 NVLSASLDGTIRLWECGT-----------GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI  263 (420)
T ss_dssp             EEEEEETTSCEEEEETTT-----------TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred             EEEEEcCCCcEEEeECCC-----------CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence            999999999999999876           334555543   33344                     4455578999999


Q ss_pred             EEeCCCcEEEEeC-CCcEEEEecC-CCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecC-Cc-EEEeee--cCCcceec
Q psy1242         468 SGSQLGPVLVHTT-FGDLLRSLDP-PSGFASPESVVMSREGV-IVVN-YERGHIAAFTMN-GN-RLRHES--HNDNLQKT  539 (540)
Q Consensus       468 sgs~Dg~v~iw~~-~g~~~~~l~~-~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~-g~-~l~~~~--~~~~V~~v  539 (540)
                      +|+.||.|++|+. +++.+..+.. |..  .|.+++|+|++. +|++ +.||.|++||+. ++ .+..+.  +...|.++
T Consensus       264 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  341 (420)
T 3vl1_A          264 AGHVSGVITVHNVFSKEQTIQLPSKFTC--SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV  341 (420)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCTTSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred             EEcCCCeEEEEECCCCceeEEcccccCC--CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence            9999999999976 6777666654 555  789999999998 7777 568999999997 43 355554  66666654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=1.7e-23  Score=220.31  Aligned_cols=240  Identities=15%  Similarity=0.122  Sum_probs=174.8

Q ss_pred             EEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCCC------cCcce
Q psy1242         266 VTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDN------FSQKL  335 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~------~~~~~  335 (540)
                      ++|+|+.|++|++||.......   ...+|.+.|.    .+.|++ |+.++++|+.+... ..+.+...      ..+..
T Consensus       134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~----~l~f~p~~~~~l~s~s~D~~v-~iwd~~~~~~~~~~~~~~~  208 (435)
T 4e54_B          134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT----GLKFNPLNTNQFYASSMEGTT-RLQDFKGNILRVFASSDTI  208 (435)
T ss_dssp             CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC----EEEECSSCTTEEEEECSSSCE-EEEETTSCEEEEEECCSSC
T ss_pred             EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE----EEEEeCCCCCEEEEEeCCCEE-EEeeccCCceeEEeccCCC
Confidence            4899999999999998765532   3346775554    577885 67777766544332 33333211      01122


Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIA  414 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~  414 (540)
                      .+.+.+++++|+++. |++|+.||+|++||++ ++.+..+               .+|.+.|++++|+|    ++. +|+
T Consensus       209 ~~~~~~~~~~~~~~~-l~~g~~dg~i~~wd~~-~~~~~~~---------------~~h~~~v~~v~~~p----~~~~~~~  267 (435)
T 4e54_B          209 NIWFCSLDVSASSRM-VVTGDNVGNVILLNMD-GKELWNL---------------RMHKKKVTHVALNP----CCDWFLA  267 (435)
T ss_dssp             SCCCCCEEEETTTTE-EEEECSSSBEEEEESS-SCBCCCS---------------BCCSSCEEEEEECT----TCSSEEE
T ss_pred             CccEEEEEECCCCCE-EEEEeCCCcEeeeccC-cceeEEE---------------ecccceEEeeeecC----CCceEEE
Confidence            334678899999995 7999999999999987 4555555               78999999999999    654 788


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG  493 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~  493 (540)
                      +|+.|++|+|||++....        ...+....+|...|++++|+|+|.+|++|+.||+|+||+. ++.....+..|..
T Consensus       268 s~s~d~~v~iwd~~~~~~--------~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~  339 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRG--------KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH  339 (435)
T ss_dssp             EEETTSBCCEEETTTCCS--------SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred             EecCcceeeEEecccccc--------cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence            999999999999876432        1223345689999999999999999999999999999976 7777777766543


Q ss_pred             ----CCCceEEEEeeCCCEEEEec-------------CCeEEEEecC-CcEEEeee--cCCcceec
Q psy1242         494 ----FASPESVVMSREGVIVVNYE-------------RGHIAAFTMN-GNRLRHES--HNDNLQKT  539 (540)
Q Consensus       494 ----~~~v~~l~fspdg~~l~s~~-------------dg~I~lw~~~-g~~l~~~~--~~~~V~~v  539 (540)
                          ...+..++|+|++.+++++.             ++.|++|+.. |+.+..+.  |...|.++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~  405 (435)
T 4e54_B          340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSL  405 (435)
T ss_dssp             CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCE
T ss_pred             cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEE
Confidence                11344567888887776642             3579999987 78877763  66666654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.91  E-value=1.9e-23  Score=218.86  Aligned_cols=254  Identities=10%  Similarity=0.033  Sum_probs=173.3

Q ss_pred             ccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCC------------cccCCCCcCC------
Q psy1242         234 LDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAA------------SIQSPSYAET------  295 (540)
Q Consensus       234 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~------------~~~~~~~~~~------  295 (540)
                      +.+.+..+.|++++..                 +++++.|+.|++|+.....            .....+|...      
T Consensus        27 ~~~~V~~v~~s~~g~~-----------------la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~   89 (447)
T 3dw8_B           27 EADIISTVEFNHSGEL-----------------LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKS   89 (447)
T ss_dssp             GGGSEEEEEECSSSSE-----------------EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGT
T ss_pred             ccCcEEEEEECCCCCE-----------------EEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccccccccc
Confidence            3456677777776655                 9999999999999987654            1122244300      


Q ss_pred             --CCCCCCCccccCCC--CeeeccCCCCCCccccccCC------------------------------------------
Q psy1242         296 --PGSPPGNLPLTLDP--ILTHPTSNNNAPVPKRHLGD------------------------------------------  329 (540)
Q Consensus       296 --v~~~~~~~~~s~D~--~l~~~g~~~~~~~~~~~~~~------------------------------------------  329 (540)
                        +......+.|++++  ..+++++.+... ..+.+..                                          
T Consensus        90 ~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i-~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (447)
T 3dw8_B           90 LEIEEKINKIRWLPQKNAAQFLLSTNDKTI-KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP  168 (447)
T ss_dssp             EEECCCCCEEEECCCCSSSEEEEEECSSCE-EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred             ccccCceEEEEEcCCCCcceEEEeCCCCeE-EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence              01233467888886  455555433222 2222211                                          


Q ss_pred             --CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         330 --NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       330 --~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                        .+.....-.+.+++|+|+++. |++| .|++|++||+++ ++.+..+....        ..+.+|.+.|++++|+|  
T Consensus       169 ~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~p--  236 (447)
T 3dw8_B          169 RRIFANAHTYHINSISINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKP--------ANMEELTEVITAAEFHP--  236 (447)
T ss_dssp             EEEECSCCSSCCCEEEECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCC--------SSGGGCCCCEEEEEECS--
T ss_pred             eEEeccCCCcceEEEEEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeeccc--------ccccccCcceEEEEECC--
Confidence              001112223678899999995 6788 799999999984 34443321100        01268999999999999  


Q ss_pred             cCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC------------CEEEEEEcCCCCEEEEEeCCC
Q psy1242         407 ITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ------------PVTSVAISAELGLVVSGSQLG  473 (540)
Q Consensus       407 ~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~------------~V~~v~~spdg~~lasgs~Dg  473 (540)
                        ++ .+|++|+.|++|++||++.....       ...+..+.+|..            .|.+++|+|++++|++++. |
T Consensus       237 --~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          237 --NSCNTFVYSSSKGTIRLCDMRASALC-------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             --SCTTEEEEEETTSCEEEEETTTCSSS-------CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             --CCCcEEEEEeCCCeEEEEECcCCccc-------cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence              87 99999999999999998863310       122577777776            9999999999999999999 9


Q ss_pred             cEEEEeC-C-CcEEEEecCCCCCCC-------------ceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEE
Q psy1242         474 PVLVHTT-F-GDLLRSLDPPSGFAS-------------PESVVMSREGVIVVNY-ERGHIAAFTMN-GNRL  527 (540)
Q Consensus       474 ~v~iw~~-~-g~~~~~l~~~~~~~~-------------v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l  527 (540)
                      .|++|+. + ++++..+.+|.....             +..++|+|+|++|+++ .||.|++|+++ ++.+
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence            9999976 3 777888877753111             2349999999999885 58999999998 4444

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=1.7e-23  Score=215.80  Aligned_cols=235  Identities=14%  Similarity=0.105  Sum_probs=173.4

Q ss_pred             EEEEccCcceEEEEcCCCCC-------cccCCCCcCCCCCCCCCccccCC----C---CeeeccCCCCCCccccccCCC-
Q psy1242         266 VTVTANHQFAINRWNPDYAA-------SIQSPSYAETPGSPPGNLPLTLD----P---ILTHPTSNNNAPVPKRHLGDN-  330 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~-------~~~~~~~~~~v~~~~~~~~~s~D----~---~l~~~g~~~~~~~~~~~~~~~-  330 (540)
                      .+++++.|++|++|+.....       ......|...|    ..+.|+++    +   .++++++.+... ..+.+... 
T Consensus        28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~g~~~~~l~s~~~dg~i-~iw~~~~~~  102 (397)
T 1sq9_A           28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL----HHVDVLQAIERDAFELCLVATTSFSGDL-LFYRITRED  102 (397)
T ss_dssp             EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCE----EEEEEEEEEETTTEEEEEEEEEETTSCE-EEEEEEECT
T ss_pred             eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcE----EEEEEecccccCCccccEEEEEcCCCCE-EEEEccCCc
Confidence            48999999999999998765       22223454332    35778888    7   666666443332 11111110 


Q ss_pred             ---------cCcce----eeEEEEEEEe----cCCCEEEEEEecCCcEEEEEccC------CeEEE-----EEeccccee
Q psy1242         331 ---------FSQKL----RVRHNCFVTT----VDSRFLLACGFWDNSFRVFSTDN------ARIVQ-----IIFGHYGVV  382 (540)
Q Consensus       331 ---------~~~~~----~v~~~~~~~s----pdg~~llasgs~Dgsv~iwd~~~------g~~~~-----~l~~~~~~v  382 (540)
                               +....    ...+.+++|+    |+++.+|++|+.||.|++||+.+      ++.+.     .+.+.    
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----  178 (397)
T 1sq9_A          103 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT----  178 (397)
T ss_dssp             TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE----
T ss_pred             ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee----
Confidence                     11110    2347888999    99995378999999999999987      55544     43100    


Q ss_pred             eeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc---C---CCCEEE
Q psy1242         383 TSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG---H---EQPVTS  456 (540)
Q Consensus       383 ~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---h---~~~V~~  456 (540)
                          +.....|...|++++|+|    ++ +|++|+.|+.|++||++.           .+++..+.+   |   ...|.+
T Consensus       179 ----~~~~~~~~~~i~~~~~~~----~~-~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          179 ----VESPMTPSQFATSVDISE----RG-LIATGFNNGTVQISELST-----------LRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             ----ECCSSSSCCCCCEEEECT----TS-EEEEECTTSEEEEEETTT-----------TEEEEEEECCC---CCCCCEEE
T ss_pred             ----eccccCCCCCceEEEECC----Cc-eEEEEeCCCcEEEEECCC-----------CceeEEEeccccccccCCccce
Confidence                000024889999999999    89 999999999999999876           457788888   9   999999


Q ss_pred             EEEcCCCCEEEEEeCC---CcEEEEeC-CCcEEEEecC-------------CCCCCCceEEEEeeCCCEEEEe-cCCeEE
Q psy1242         457 VAISAELGLVVSGSQL---GPVLVHTT-FGDLLRSLDP-------------PSGFASPESVVMSREGVIVVNY-ERGHIA  518 (540)
Q Consensus       457 v~~spdg~~lasgs~D---g~v~iw~~-~g~~~~~l~~-------------~~~~~~v~~l~fspdg~~l~s~-~dg~I~  518 (540)
                      ++|+|++.+|++++.|   |.|++|+. +++.+..+..             |..  .|.+++|+|+|++|+++ .||.|+
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC--cEEEEEECCCCCEEEEEeCCCeEE
Confidence            9999999999999999   99999976 8889999988             777  78999999999999985 589999


Q ss_pred             EEecC-CcEEEeee
Q psy1242         519 AFTMN-GNRLRHES  531 (540)
Q Consensus       519 lw~~~-g~~l~~~~  531 (540)
                      +|++. ++.+..+.
T Consensus       317 iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          317 FWDVKTKERITTLN  330 (397)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEEcCCCceeEEEe
Confidence            99997 77777775

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=3.6e-24  Score=219.67  Aligned_cols=237  Identities=11%  Similarity=-0.005  Sum_probs=170.0

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCC--Cc-ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc----
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYA--AS-IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF----  331 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~--~~-~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~----  331 (540)
                      .+.+++..+++++.|++|++|+..+.  .. ....+|.+.|    ..+.|++|+.++++++.+... ..+.+....    
T Consensus        18 ~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~l~s~s~d~~v-~vwd~~~~~~~~~   92 (377)
T 3dwl_C           18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIV----TCVDWAPKSNRIVTCSQDRNA-YVYEKRPDGTWKQ   92 (377)
T ss_dssp             EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCE----EEEEECTTTCCEEEEETTSSE-EEC------CCCC
T ss_pred             EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceE----EEEEEeCCCCEEEEEeCCCeE-EEEEcCCCCceee
Confidence            34444455999999999999999865  32 2333465433    357789998777776544332 222221110    


Q ss_pred             ---CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeE---EEEEecccceeeeeeEEEeec-cCcceEEEEecc
Q psy1242         332 ---SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI---VQIIFGHYGVVTSRIVQIIFG-HYGVVTCLSRSE  404 (540)
Q Consensus       332 ---~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~---~~~l~~~~~~v~~~~~~~l~~-h~~~Vt~l~~sp  404 (540)
                         -....-.+.+++|+|+++. |++|+.|++|++||+++++.   ...+               .+ |.+.|++++|+|
T Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~---------------~~~h~~~v~~~~~~~  156 (377)
T 3dwl_C           93 TLVLLRLNRAATFVRWSPNEDK-FAVGSGARVISVCYFEQENDWWVSKHL---------------KRPLRSTILSLDWHP  156 (377)
T ss_dssp             EEECCCCSSCEEEEECCTTSSC-CEEEESSSCEEECCC-----CCCCEEE---------------CSSCCSCEEEEEECT
T ss_pred             eeEecccCCceEEEEECCCCCE-EEEEecCCeEEEEEECCcccceeeeEe---------------ecccCCCeEEEEEcC
Confidence               0111224788999999995 79999999999999998763   4555               56 999999999999


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCccccc------CCC-CCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIV------GET-DTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV  477 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~------~~~-~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i  477 (540)
                          ++++|++|+.|++|++||++.......      +.. ..++++..+ +|...|++++|+|++++|++++.||+|++
T Consensus       157 ----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          157 ----NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI  231 (377)
T ss_dssp             ----TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred             ----CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence                999999999999999999864221100      000 013455566 99999999999999999999999999999


Q ss_pred             EeC-CCcE----EEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         478 HTT-FGDL----LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       478 w~~-~g~~----~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      |+. +++.    +..+..|..  +|.+++|+|+|++|++++++.+.+|+..
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          232 AYPSAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             CEECSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred             EECCCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence            965 5655    677888887  7899999999999999988888888875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.91  E-value=1.8e-22  Score=201.88  Aligned_cols=201  Identities=19%  Similarity=0.265  Sum_probs=158.2

Q ss_pred             CccccCCCCeeeccCCCCCCccccccCC-CcC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEec
Q psy1242         302 NLPLTLDPILTHPTSNNNAPVPKRHLGD-NFS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFG  377 (540)
Q Consensus       302 ~~~~s~D~~l~~~g~~~~~~~~~~~~~~-~~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~  377 (540)
                      .+.|++|+.++++++.+... ..+.+.. ...   ......+.+++|+|+++. |++|+.|+.|++||+++++.+..+  
T Consensus        28 ~~~~s~~~~~l~s~~~dg~i-~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~--  103 (312)
T 4ery_A           28 SVKFSPNGEWLASSSADKLI-KIWGAYDGKFEKTISGHKLGISDVAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTL--  103 (312)
T ss_dssp             EEEECTTSSEEEEEETTSCE-EEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEE--
T ss_pred             EEEECCCCCEEEEeeCCCeE-EEEeCCCcccchhhccCCCceEEEEEcCCCCE-EEEECCCCEEEEEECCCCcEEEEE--
Confidence            45677777776666433332 1111111 000   011223788899999995 799999999999999999988888  


Q ss_pred             ccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEE
Q psy1242         378 HYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSV  457 (540)
Q Consensus       378 ~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v  457 (540)
                                   .+|.+.|.+++|+|    ++++|++|+.|++|++||++.           ++++..+.+|...|.++
T Consensus       104 -------------~~~~~~v~~~~~~~----~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A          104 -------------KGHSNYVFCCNFNP----QSNLIVSGSFDESVRIWDVKT-----------GKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             -------------ECCSSCEEEEEECS----SSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEE
T ss_pred             -------------cCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCC-----------CEEEEEecCCCCcEEEE
Confidence                         88999999999999    999999999999999999876           45778899999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cC
Q psy1242         458 AISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HN  533 (540)
Q Consensus       458 ~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~  533 (540)
                      +|+|++.++++|+.||.|++|+. +++.+..+..+... ++..++|+|+|++|++ +.|+.|++||+. ++.+..+. |.
T Consensus       156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  234 (312)
T 4ery_A          156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK  234 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC-CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC-ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC
Confidence            99999999999999999999976 77777776544332 6889999999999988 468999999987 66666654 44


Q ss_pred             Cc
Q psy1242         534 DN  535 (540)
Q Consensus       534 ~~  535 (540)
                      ..
T Consensus       235 ~~  236 (312)
T 4ery_A          235 NE  236 (312)
T ss_dssp             CS
T ss_pred             Cc
Confidence            33

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.2e-23  Score=226.97  Aligned_cols=226  Identities=10%  Similarity=-0.013  Sum_probs=158.9

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcc------------cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASI------------QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-  330 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~------------~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-  330 (540)
                      ..++||+|.|++|++|++..+...            ...+|..    ...++.|++++. +++|+.+.. ...+.+... 
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~----~v~sv~~s~~~~-lasgs~Dgt-V~lWD~~~~~  298 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS----LITTFDFLSPTT-VVCGFKNGF-VAEFDLTDPE  298 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT----CEEEEEESSSSE-EEEEETTSE-EEEEETTBCS
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC----CEEEEEecCCCe-EEEEeCCCE-EEEEECCCCC
Confidence            457999999999999999765322            1112332    223566777664 445543322 233333211 


Q ss_pred             -----c-CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc--ceEEEEe
Q psy1242         331 -----F-SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG--VVTCLSR  402 (540)
Q Consensus       331 -----~-~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~--~Vt~l~~  402 (540)
                           + .+...|...+++++++|..+||+|+.|++|+|||++++++...+               .+|..  .|.+++|
T Consensus       299 ~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~---------------~~~~~~~~v~~v~f  363 (524)
T 2j04_B          299 VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTT---------------VSRFRGSNLVPVVY  363 (524)
T ss_dssp             SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEE---------------EEECSCCSCCCEEE
T ss_pred             CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccc---------------ccccccCcccceEe
Confidence                 1 12223333333678888336899999999999999988876666               55653  5889999


Q ss_pred             ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q psy1242         403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-  481 (540)
Q Consensus       403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-  481 (540)
                      +|    ++..+++++.|++|++||++.           +.++..+.+|.+.|++|+|+|+|++|++|+.||+|++|+.. 
T Consensus       364 sp----~~~~l~s~~~d~tv~lwd~~~-----------~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          364 CP----QIYSYIYSDGASSLRAVPSRA-----------AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             ET----TTTEEEEECSSSEEEEEETTC-----------TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             CC----CcCeEEEeCCCCcEEEEECcc-----------cccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            99    999999999999999999876           35667888999999999999999999999999999988521 


Q ss_pred             ----C----------------------------------------cEEEEecCCCCCCCceEEEEeeCCC---EEEEec-
Q psy1242         482 ----G----------------------------------------DLLRSLDPPSGFASPESVVMSREGV---IVVNYE-  513 (540)
Q Consensus       482 ----g----------------------------------------~~~~~l~~~~~~~~v~~l~fspdg~---~l~s~~-  513 (540)
                          +                                        .++.++.+|..  .|.+|+|+|++.   .+|+|+ 
T Consensus       429 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~--~V~~Vafsp~~~~~~~lAsg~~  506 (524)
T 2j04_B          429 RLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI--NITCTKWNETSAGGKCYAFSNS  506 (524)
T ss_dssp             STTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC--SCCCEEECCSTTTTTEEEEECT
T ss_pred             hhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc--eEEEEECCCCCCccHHHHhhcc
Confidence                1                                        11222333444  789999999964   888865 


Q ss_pred             CCeEEEEecCCcEE
Q psy1242         514 RGHIAAFTMNGNRL  527 (540)
Q Consensus       514 dg~I~lw~~~g~~l  527 (540)
                      +|.|+||++.|+..
T Consensus       507 ~g~vrlw~l~~~~~  520 (524)
T 2j04_B          507 AGLLTLEYLSLEHH  520 (524)
T ss_dssp             TSEEEEEECSCC--
T ss_pred             CceEEEEEcccccc
Confidence            59999999987643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.91  E-value=1.9e-22  Score=207.77  Aligned_cols=253  Identities=11%  Similarity=0.078  Sum_probs=174.7

Q ss_pred             ccceeEEEecCC-CCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCC--------------CcCCCCC
Q psy1242         234 LDDVCMSLKFPS-NSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPS--------------YAETPGS  298 (540)
Q Consensus       234 ~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~--------------~~~~v~~  298 (540)
                      +.+.+..+.|++ ++..                 +++++.|++|++|+..+........              |.+.|  
T Consensus        42 h~~~v~~~~~s~~~~~~-----------------l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--  102 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRY-----------------MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV--  102 (408)
T ss_dssp             CSSCEEEEEECTTTCCE-----------------EEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE--
T ss_pred             cCCcEEEEEEecCCCCE-----------------EEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE--
Confidence            455566666666 5544                 9999999999999998765433321              43222  


Q ss_pred             CCCCccccC-CCCeeeccCCCCCCccccccCCCcC---cceeeEEEEEEEecCCC--EEEEEEecCCcEEEEEccCCeEE
Q psy1242         299 PPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDNFS---QKLRVRHNCFVTTVDSR--FLLACGFWDNSFRVFSTDNARIV  372 (540)
Q Consensus       299 ~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~spdg~--~llasgs~Dgsv~iwd~~~g~~~  372 (540)
                        ..+.|++ ++.++++++.+.. ...+.+.....   ......+.++++++.+.  .++++|+.|+.|++||+++++.+
T Consensus       103 --~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          103 --ETVQWYPHDTGMFTSSSFDKT-LKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             --EEEEECTTCTTCEEEEETTSE-EEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             --EEEEEccCCCcEEEEEeCCCe-EEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence              3567777 6656665543322 22222221100   00111256677777433  15799999999999999999888


Q ss_pred             EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccC-----CCCCCcceEE
Q psy1242         373 QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVG-----ETDTPTPRAT  446 (540)
Q Consensus       373 ~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~-----~~~~~~~~~~  446 (540)
                      ..+               .+|.+.|++++|+|    ++. .|++|+.||.|++||++........     ..........
T Consensus       180 ~~~---------------~~~~~~v~~~~~~~----~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (408)
T 4a11_B          180 HIL---------------QGHRQEILAVSWSP----RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA  240 (408)
T ss_dssp             EEE---------------CCCCSCEEEEEECS----SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred             eee---------------cCCCCcEEEEEECC----CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence            887               78999999999999    787 5899999999999999764311100     0001112223


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C--------------------------------------------
Q psy1242         447 LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-F--------------------------------------------  481 (540)
Q Consensus       447 l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~--------------------------------------------  481 (540)
                      ..+|...|.+++|+|++.+|++++.||.|++|+. +                                            
T Consensus       241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d  320 (408)
T 4a11_B          241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT  320 (408)
T ss_dssp             SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred             cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence            3679999999999999999999999999999964 2                                            


Q ss_pred             ---CcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEe
Q psy1242         482 ---GDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       482 ---g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~  529 (540)
                         ++.+..+.+|..  .|.+++|+|+|++|+++ .||.|++|+++ ++.+..
T Consensus       321 ~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          321 VYSGEQITMLKGHYK--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             TTTCCEEEEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred             CcCCcceeeeccCCC--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence               355677777877  78999999999999985 68999999998 555443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=3.6e-23  Score=213.34  Aligned_cols=225  Identities=10%  Similarity=0.002  Sum_probs=171.4

Q ss_pred             EEEEEccCcceEEEEcCCCCCc------ccCCCCcCCC-CCCCCCcccc----CCCCe-eeccCCCCCCccccccCC---
Q psy1242         265 VVTVTANHQFAINRWNPDYAAS------IQSPSYAETP-GSPPGNLPLT----LDPIL-THPTSNNNAPVPKRHLGD---  329 (540)
Q Consensus       265 ~~lvs~s~D~tv~~W~~~~~~~------~~~~~~~~~v-~~~~~~~~~s----~D~~l-~~~g~~~~~~~~~~~~~~---  329 (540)
                      ..+++++.|++|++|+......      .....|.... ......+.++    +++.. +++++.+... ..+.+..   
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~  160 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT-YIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE-EEEEEESSSS
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE-EEEeCCcccc
Confidence            6799999999999999876553      2222342000 1223357788    88877 6666443332 1221111   


Q ss_pred             -----CcC--------------cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEe
Q psy1242         330 -----NFS--------------QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQII  390 (540)
Q Consensus       330 -----~~~--------------~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l  390 (540)
                           ...              ......+.+++|+|++ . +++|+.|+.|++||+++++.+..+               
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~i~i~d~~~~~~~~~~---------------  223 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-IATGFNNGTVQISELSTLRPLYNF---------------  223 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-EEEECTTSEEEEEETTTTEEEEEE---------------
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-EEEEeCCCcEEEEECCCCceeEEE---------------
Confidence                 100              1112336788999999 4 799999999999999999988888               


Q ss_pred             ec---c---CcceEEEEeccCccCCCcEEEEEeCC---CcEEEEEcCCCcccccCCCCCCcceEEecc------------
Q psy1242         391 FG---H---YGVVTCLSRSECNITADCFIASGSAD---CTVLLWHWNARTQSIVGETDTPTPRATLTG------------  449 (540)
Q Consensus       391 ~~---h---~~~Vt~l~~sp~~~~dg~~l~sgs~D---gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~------------  449 (540)
                      .+   |   ...|++++|+|    ++++|++++.|   +.|++||++.           .+++..+.+            
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~----~~~~l~~~~~d~~~g~i~i~d~~~-----------~~~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSP----QGSLLAIAHDSNSFGCITLYETEF-----------GERIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             ECCC---CCCCCEEEEEECS----STTEEEEEEEETTEEEEEEEETTT-----------CCEEEEECBC--------CCB
T ss_pred             eccccccccCCccceEEECC----CCCEEEEEecCCCCceEEEEECCC-----------CcccceeccCccccccccccc
Confidence            66   8   89999999999    99999999999   9999999876           456778888            


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec------CC---------------CCCCCceEEEEeeCC
Q psy1242         450 -HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD------PP---------------SGFASPESVVMSREG  506 (540)
Q Consensus       450 -h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~------~~---------------~~~~~v~~l~fspdg  506 (540)
                       |...|.+++|+|++++|++++.||.|++|+. +++.+..+.      .|               ..  .|.+++|+|+|
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~v~~~~~~~~g  366 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP--GVFDVKFLKKG  366 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC--CEEEEEEECTT
T ss_pred             ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCC--ceeEEEecccc
Confidence             9999999999999999999999999999976 788899998      66               66  79999999998


Q ss_pred             ----------CEEEE-ecCCeEEEEecCC
Q psy1242         507 ----------VIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       507 ----------~~l~s-~~dg~I~lw~~~g  524 (540)
                                ++|++ +.||.|++|++++
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCC
Confidence                      67777 5699999999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.91  E-value=1.7e-22  Score=213.54  Aligned_cols=248  Identities=15%  Similarity=0.157  Sum_probs=183.7

Q ss_pred             cEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCccee
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQKLR  336 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~~~  336 (540)
                      ...++|++.|++|++||..++.... ..+|.+.|.    .+.+++++.++ +|+.+.. ...+.+..      ...+...
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~----~l~~~~~~~l~-s~s~dg~-i~vwd~~~~~~~~~~~~h~~~  205 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW----ALKYAHGGILV-SGSTDRT-VRVWDIKKGCCTHVFEGHNST  205 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE----EEEECSTTEEE-EEETTSC-EEEEETTTTEEEEEECCCSSC
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEE----EEEEcCCCEEE-EEeCCCC-EEEEECCCCcEEEEECCCCCc
Confidence            3468999999999999988766433 335664443    56677777444 4433222 22222221      1112223


Q ss_pred             eEEEEEEEe--cCCCEEEEEEecCCcEEEEEccCCeE-----------------------EEEEecccceeee-------
Q psy1242         337 VRHNCFVTT--VDSRFLLACGFWDNSFRVFSTDNARI-----------------------VQIIFGHYGVVTS-------  384 (540)
Q Consensus       337 v~~~~~~~s--pdg~~llasgs~Dgsv~iwd~~~g~~-----------------------~~~l~~~~~~v~~-------  384 (540)
                        +.+++++  ++++ ++++|+.|++|++||+.+++.                       +..+.+|...+.+       
T Consensus       206 --v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  282 (464)
T 3v7d_B          206 --VRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI  282 (464)
T ss_dssp             --EEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTE
T ss_pred             --cEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCE
Confidence              4555555  5666 579999999999999987652                       4455566554432       


Q ss_pred             ------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEE
Q psy1242         385 ------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT  446 (540)
Q Consensus       385 ------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~  446 (540)
                                        +.+..+.+|.+.|++++|+|    ++++|++|+.|++|++||+++           ++++..
T Consensus       283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~sg~~dg~i~vwd~~~-----------~~~~~~  347 (464)
T 3v7d_B          283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH----ERKRCISASMDTTIRIWDLEN-----------GELMYT  347 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----TTTEEEEEETTSCEEEEETTT-----------TEEEEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCC-----------CcEEEE
Confidence                              56677889999999999999    999999999999999999876           467889


Q ss_pred             eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-C
Q psy1242         447 LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-G  524 (540)
Q Consensus       447 l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g  524 (540)
                      +.+|...|.+++++  +.++++|+.||+|++|+. ++....... +..  .+..++|++++++|+++++|.|++|+++ |
T Consensus       348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g  422 (464)
T 3v7d_B          348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTN--LSAITTFYVSDNILVSGSENQFNIYNLRSG  422 (464)
T ss_dssp             ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTT--CCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCC--CccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence            99999999999997  579999999999999977 555555553 333  5688999999999999889999999987 8


Q ss_pred             cEEEee--ecCCcceecC
Q psy1242         525 NRLRHE--SHNDNLQKTA  540 (540)
Q Consensus       525 ~~l~~~--~~~~~V~~va  540 (540)
                      +.+...  .+.+.|.+|+
T Consensus       423 ~~~~~~~~~~~~~v~~v~  440 (464)
T 3v7d_B          423 KLVHANILKDADQIWSVN  440 (464)
T ss_dssp             CEEESCTTTTCSEEEEEE
T ss_pred             cEEehhhccCCCcEEEEE
Confidence            887753  4777777763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.4e-24  Score=232.48  Aligned_cols=227  Identities=10%  Similarity=0.017  Sum_probs=159.1

Q ss_pred             CCcEEEEEccCcceEEEEcCCCCCcc----c-CCCCcCCCCCCCCCccccCC------CCeeeccCCCCCCccccccCCC
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYAASI----Q-SPSYAETPGSPPGNLPLTLD------PILTHPTSNNNAPVPKRHLGDN  330 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~~~~----~-~~~~~~~v~~~~~~~~~s~D------~~l~~~g~~~~~~~~~~~~~~~  330 (540)
                      ++...++|+|.|++|++|+..++...    . ...|.+.|    ..+.|+++      +.++++++.+.. ...+.+...
T Consensus       171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V----~~v~wsp~~~~~~~~~~LAs~s~Dgt-vrlWd~~~~  245 (524)
T 2j04_B          171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV----WDLKWHEGCHAPHLVGCLSFVSQEGT-INFLEIIDN  245 (524)
T ss_dssp             -----------CEEEEEEEEETTTCCEEEEEEEEECCCSE----EEEEECSSCCCSSSSCEEEEEETTSC-EEEEECCCC
T ss_pred             hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE----EEEEECCCCCCCCCCceEEEEecCCe-EEEEEcCCC
Confidence            34556899999999999998765432    1 12233222    24567765      456666554332 233333211


Q ss_pred             cC----------c-----ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeeeEEEeeccC
Q psy1242         331 FS----------Q-----KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHY  394 (540)
Q Consensus       331 ~~----------~-----~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~  394 (540)
                      ..          .     .....+.|++|++++  .|++|+.||+|++||+++++ ....+               .+|.
T Consensus       246 ~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~---------------~~H~  308 (524)
T 2j04_B          246 ATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYD---------------QVHD  308 (524)
T ss_dssp             SSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEE---------------ECSS
T ss_pred             ccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEe---------------eccc
Confidence            00          0     011247889998865  47999999999999998764 33445               7899


Q ss_pred             cceEEE--EeccCccCCC-cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC--CEEEEEEcCCCCEEEEE
Q psy1242         395 GVVTCL--SRSECNITAD-CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ--PVTSVAISAELGLVVSG  469 (540)
Q Consensus       395 ~~Vt~l--~~sp~~~~dg-~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasg  469 (540)
                      +.|++|  +|+|    +| .+|+|||.|++|+|||++.           +++...+.+|..  .|.+++|+|+++.++++
T Consensus       309 ~~V~sv~~~~s~----~g~~~laS~S~D~tvklWD~~~-----------~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~  373 (524)
T 2j04_B          309 SYILSVSTAYSD----FEDTVVSTVAVDGYFYIFNPKD-----------IATTKTTVSRFRGSNLVPVVYCPQIYSYIYS  373 (524)
T ss_dssp             SCEEEEEEECCT----TSCCEEEEEETTSEEEEECGGG-----------HHHHCEEEEECSCCSCCCEEEETTTTEEEEE
T ss_pred             ccEEEEEEEcCC----CCCeEEEEeccCCeEEEEECCC-----------CCcccccccccccCcccceEeCCCcCeEEEe
Confidence            999999  5677    77 8999999999999999876           345566667754  58899999999999999


Q ss_pred             eCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEE
Q psy1242         470 SQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRL  527 (540)
Q Consensus       470 s~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l  527 (540)
                      +.|++|++|+. ++.++.++.+|.+  .|.+|+|+|+|++|++ +.|++|++|++.++.+
T Consensus       374 ~~d~tv~lwd~~~~~~~~~l~gH~~--~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~  431 (524)
T 2j04_B          374 DGASSLRAVPSRAAFAVHPLVSRET--TITAIGVSRLHPMVLAGSADGSLIITNAARRLL  431 (524)
T ss_dssp             CSSSEEEEEETTCTTCCEEEEECSS--CEEEEECCSSCCBCEEEETTTEEECCBSCSSTT
T ss_pred             CCCCcEEEEECcccccceeeecCCC--ceEEEEeCCCCCeEEEEECCCEEEEEechHhhc
Confidence            99999999975 7777788888988  8899999999999988 5689999999876543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.6e-22  Score=203.54  Aligned_cols=231  Identities=12%  Similarity=0.132  Sum_probs=179.4

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCC-----CCCccccccCC
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN-----NAPVPKRHLGD  329 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~-----~~~~~~~~~~~  329 (540)
                      ++.+.+.+++..+++++.|++|++|+..++.......+..    ....+.+++++..++++...     .. ...+.+..
T Consensus        77 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~~~~~~~g~-i~~~d~~~  151 (369)
T 3zwl_B           77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV----PVKRVEFSPCGNYFLAILDNVMKNPGS-INIYEIER  151 (369)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSSEEEEEECCBTTBCCE-EEEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC----CeEEEEEccCCCEEEEecCCccCCCCE-EEEEEecC
Confidence            4444555566679999999999999998776554444432    23357788998777765433     11 11111110


Q ss_pred             C-----------------cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEee
Q psy1242         330 N-----------------FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIF  391 (540)
Q Consensus       330 ~-----------------~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~  391 (540)
                      .                 ..+.....+.+++|+|+++. +++|+.||.|++||+.+ ++.+..+               .
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~---------------~  215 (369)
T 3zwl_B          152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY-IIAGHKDGKISKYDVSNNYEYVDSI---------------D  215 (369)
T ss_dssp             CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE-EEEEETTSEEEEEETTTTTEEEEEE---------------E
T ss_pred             CccceeecccccceeeeccCCcCccceeEEEEcCCCCE-EEEEcCCCEEEEEECCCCcEeEEEE---------------e
Confidence            0                 00000014788899999995 78999999999999998 6777777               7


Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      +|...|++++|+|    ++.+|++++.|+.|++||++.           .+++..+. +...+.+++|+|+++++++++.
T Consensus       216 ~~~~~v~~~~~~~----~~~~l~~~~~d~~i~v~d~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          216 LHEKSISDMQFSP----DLTYFITSSRDTNSFLVDVST-----------LQVLKKYE-TDCPLNTAVITPLKEFIILGGG  279 (369)
T ss_dssp             CCSSCEEEEEECT----TSSEEEEEETTSEEEEEETTT-----------CCEEEEEE-CSSCEEEEEECSSSSEEEEEEC
T ss_pred             cCCCceeEEEECC----CCCEEEEecCCceEEEEECCC-----------Cceeeeec-CCCCceeEEecCCCceEEEeec
Confidence            8999999999999    999999999999999999876           34555555 7888999999999999999999


Q ss_pred             CC--------------cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCC
Q psy1242         472 LG--------------PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  524 (540)
Q Consensus       472 Dg--------------~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g  524 (540)
                      ++              .+++|+. +++.+..+.+|..  .|.+++|+|+|++|+++ .||.|++|+++.
T Consensus       280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          280 QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             CC-------------CEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             CCCceEEEEecCCCcceeEEEecCCCcchhheecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            88              7889976 8889999999988  78999999999999985 689999999883

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.2e-22  Score=208.23  Aligned_cols=236  Identities=15%  Similarity=0.084  Sum_probs=176.6

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCC-CcCCC-----------CCCCCCccccCCCCeeeccCCCCCCc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPS-YAETP-----------GSPPGNLPLTLDPILTHPTSNNNAPV  322 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~-~~~~v-----------~~~~~~~~~s~D~~l~~~g~~~~~~~  322 (540)
                      +....+.++...+++++.|+.|++|+..++....... +....           ......+.+++++.+++++.+  ...
T Consensus       152 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~i  229 (425)
T 1r5m_A          152 IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK--GAI  229 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG--GCE
T ss_pred             EEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC--CeE
Confidence            3344455555568999999999999997655333222 21110           001345677788776665422  111


Q ss_pred             cccccCCCcC----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242         323 PKRHLGDNFS----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT  398 (540)
Q Consensus       323 ~~~~~~~~~~----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt  398 (540)
                      ..+.+.....    ....-.+.+++|+|+++. |++|+.|+.|++||+.+++.+..+               .+|...|.
T Consensus       230 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~---------------~~~~~~i~  293 (425)
T 1r5m_A          230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKL-LLSASDDGTLRIWHGGNGNSQNCF---------------YGHSQSIV  293 (425)
T ss_dssp             EEEETTCSSCSEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEECSSSBSCSEEE---------------CCCSSCEE
T ss_pred             EEEEcCCCceeeeeccCCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCCccceEe---------------cCCCccEE
Confidence            2222111000    011223688899999995 789999999999999998888777               78999999


Q ss_pred             EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         399 CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                      +++|+|    ++ .+++++.|+.|++||++.           .+++..+..|...|.+++|+|++++|++++.||.|++|
T Consensus       294 ~~~~~~----~~-~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  357 (425)
T 1r5m_A          294 SASWVG----DD-KVISCSMDGSVRLWSLKQ-----------NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY  357 (425)
T ss_dssp             EEEEET----TT-EEEEEETTSEEEEEETTT-----------TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEECC----CC-EEEEEeCCCcEEEEECCC-----------CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEE
Confidence            999999    88 999999999999999876           45778888999999999999999999999999999999


Q ss_pred             eC-CCc--------------------EEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         479 TT-FGD--------------------LLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       479 ~~-~g~--------------------~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      +. +++                    .+..+..|.....|.+++|+|+|++|++ +.||.|++|+++|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          358 DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             ECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred             ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence            76 566                    7888988854225899999999999987 5689999999876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=2.2e-22  Score=211.57  Aligned_cols=236  Identities=14%  Similarity=0.084  Sum_probs=175.2

Q ss_pred             cceeeecCC-cEEEEEccCcceEEEEcCCCC----------C-cccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCC
Q psy1242         255 NTYVTLHMP-SVVTVTANHQFAINRWNPDYA----------A-SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAP  321 (540)
Q Consensus       255 ~~~~~~~~~-~~~lvs~s~D~tv~~W~~~~~----------~-~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~  321 (540)
                      ++...+.+. ..++++++.|++|++|+....          . .....+|...    ...+.|++++. ++++|+.+...
T Consensus       131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~l~s~~~dg~i  206 (430)
T 2xyi_A          131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE----GYGLSWNPNLNGYLLSASDDHTI  206 (430)
T ss_dssp             CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSC----CCCEEECTTSTTEEEEECTTSCE
T ss_pred             EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCC----eEEEEeCCCCCCeEEEEeCCCeE
Confidence            333444443 567999999999999998651          1 1112245433    34678888876 66666433332


Q ss_pred             ccccccCCCc-----------CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC---eEEEEEecccceeeeeeE
Q psy1242         322 VPKRHLGDNF-----------SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA---RIVQIIFGHYGVVTSRIV  387 (540)
Q Consensus       322 ~~~~~~~~~~-----------~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g---~~~~~l~~~~~~v~~~~~  387 (540)
                       ..+.+....           -......+.+++|+|++..+|++|+.||.|++||++++   +.+..+            
T Consensus       207 -~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~------------  273 (430)
T 2xyi_A          207 -CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV------------  273 (430)
T ss_dssp             -EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE------------
T ss_pred             -EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe------------
Confidence             222222200           00112237889999955557899999999999999977   455555            


Q ss_pred             EEeeccCcceEEEEeccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-E
Q psy1242         388 QIIFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-L  465 (540)
Q Consensus       388 ~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~  465 (540)
                         .+|...|++++|+|    ++. .|++|+.||+|++||++..          ..++..+.+|...|++++|+|+++ +
T Consensus       274 ---~~~~~~v~~i~~~p----~~~~~l~tg~~dg~v~vwd~~~~----------~~~~~~~~~h~~~v~~i~~sp~~~~~  336 (430)
T 2xyi_A          274 ---DAHTAEVNCLSFNP----YSEFILATGSADKTVALWDLRNL----------KLKLHSFESHKDEIFQVQWSPHNETI  336 (430)
T ss_dssp             ---ECCSSCEEEEEECS----SCTTEEEEEETTSEEEEEETTCT----------TSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             ---ecCCCCeEEEEeCC----CCCCEEEEEeCCCeEEEEeCCCC----------CCCeEEeecCCCCEEEEEECCCCCCE
Confidence               78999999999999    776 7899999999999998752          246788899999999999999985 7


Q ss_pred             EEEEeCCCcEEEEeCCC---------------cEEEEecCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecCCcE
Q psy1242         466 VVSGSQLGPVLVHTTFG---------------DLLRSLDPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTMNGNR  526 (540)
Q Consensus       466 lasgs~Dg~v~iw~~~g---------------~~~~~l~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g~~  526 (540)
                      +++++.||.|+||+...               +++..+.+|..  .|.+++|+|++. +|++ +.||.|++|+++...
T Consensus       337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--KISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC--CceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            99999999999997632               77888888887  789999999999 7776 568999999987443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.90  E-value=2.6e-23  Score=215.01  Aligned_cols=232  Identities=19%  Similarity=0.196  Sum_probs=169.0

Q ss_pred             CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-Ccc---eeeEEEEEEEecCCCEEEEEEecCCcEEEEE
Q psy1242         290 PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-SQK---LRVRHNCFVTTVDSRFLLACGFWDNSFRVFS  365 (540)
Q Consensus       290 ~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~~spdg~~llasgs~Dgsv~iwd  365 (540)
                      .+|.+.|.    .+.|++|+.++++|+.+... ..+.+.... ...   ..-.+.+++|+|+|++ |++|+.|+.+++|+
T Consensus        63 ~gH~~~V~----~~~~sp~~~~l~s~s~D~~v-~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~-las~~~d~~v~iw~  136 (380)
T 3iz6_a           63 QGHSGKVY----SLDWTPEKNWIVSASQDGRL-IVWNALTSQKTHAIKLHCPWVMECAFAPNGQS-VACGGLDSACSIFN  136 (380)
T ss_dssp             CCCSSCEE----EEEECTTSSCEEEEETTSEE-EEEETTTTEEEEEEECCCTTCCCCEECTTSSE-EEECCSSSCCEEEE
T ss_pred             cccccEEE----EEEEcCCCCEEEEEeCCCeE-EEEECCCCccceEEecCCCCEEEEEECCCCCE-EEEeeCCCcEEEEE
Confidence            35554443    56788888777777544332 222221110 000   0112567789999995 79999999999999


Q ss_pred             ccCCe-------EEEEEecccceeee----------------------------eeEEEe-----eccCcceEEEEeccC
Q psy1242         366 TDNAR-------IVQIIFGHYGVVTS----------------------------RIVQII-----FGHYGVVTCLSRSEC  405 (540)
Q Consensus       366 ~~~g~-------~~~~l~~~~~~v~~----------------------------~~~~~l-----~~h~~~Vt~l~~sp~  405 (540)
                      +.+..       ....+.+|.+.+.+                            +.+..+     .+|...|.++++++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL  216 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence            86432       22344555544321                            233334     579999999999873


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcE
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDL  484 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~  484 (540)
                         ++.+|++|+.|++|++||++..          ..++..+.+|...|++++|+|++.+|++|+.||+|++|+. +++.
T Consensus       217 ---~~~~l~sgs~D~~v~~wd~~~~----------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~  283 (380)
T 3iz6_a          217 ---NANMFISGSCDTTVRLWDLRIT----------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ  283 (380)
T ss_dssp             ---SCCEEEEEETTSCEEEEETTTT----------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred             ---CCCEEEEEECCCeEEEEECCCC----------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence               7899999999999999998742          3567889999999999999999999999999999999976 7888


Q ss_pred             EEEecCCCCC-----CCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEee-----ecCCcceecC
Q psy1242         485 LRSLDPPSGF-----ASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHE-----SHNDNLQKTA  540 (540)
Q Consensus       485 ~~~l~~~~~~-----~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~-----~~~~~V~~va  540 (540)
                      +..+..+...     ..|.+++|+|+|++|++| .||.|++||+. ++.+..+     .|.+.|+|++
T Consensus       284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~  351 (380)
T 3iz6_a          284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG  351 (380)
T ss_dssp             EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred             EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence            8877654321     137899999999999986 58999999986 6766655     3888888864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.90  E-value=1.4e-22  Score=208.80  Aligned_cols=199  Identities=10%  Similarity=0.050  Sum_probs=147.4

Q ss_pred             cceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeec
Q psy1242         235 DDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHP  314 (540)
Q Consensus       235 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~  314 (540)
                      ++.+..+.|+|++..               ++++|++.|++|++||+.+........|.+.|    ..+.|++|+.++++
T Consensus       133 ~~~~~~v~fSpDg~~---------------la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V----~~v~fspdg~~l~s  193 (365)
T 4h5i_A          133 DDYTKLVYISREGTV---------------AAIASSKVPAIMRIIDPSDLTEKFEIETRGEV----KDLHFSTDGKVVAY  193 (365)
T ss_dssp             TCCEEEEEECTTSSC---------------EEEEESCSSCEEEEEETTTTEEEEEEECSSCC----CEEEECTTSSEEEE
T ss_pred             ccCEEEEEEcCCCCE---------------EEEEECCCCCEEEEeECCCCcEEEEeCCCCce----EEEEEccCCceEEe
Confidence            334556677777654               33567888999999999887766666666544    36789999998887


Q ss_pred             cCCCCCCccccccCC-----CcCcceeeEEEEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeee
Q psy1242         315 TSNNNAPVPKRHLGD-----NFSQKLRVRHNCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSR  385 (540)
Q Consensus       315 g~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~  385 (540)
                      +++.... ..+...+     .........+.+++|+|+++. +++++.|+    .+++|++..+......          
T Consensus       194 ~s~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~----------  261 (365)
T 4h5i_A          194 ITGSSLE-VISTVTGSCIARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNTSVLR----------  261 (365)
T ss_dssp             ECSSCEE-EEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEEEEEE----------
T ss_pred             ccceeEE-EEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeecccccceeccee----------
Confidence            7543221 1111111     011112234678889999996 67777777    5888998766542211          


Q ss_pred             eEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEE-eccCCCCEEEEEEcCCCC
Q psy1242         386 IVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRAT-LTGHEQPVTSVAISAELG  464 (540)
Q Consensus       386 ~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~spdg~  464 (540)
                       ...+.+|...|++++|+|    +|++|++|+.|++|+|||+++           ++++.. +.+|...|++|+|||||+
T Consensus       262 -~~~~~~~~~~V~~~~~Sp----dg~~lasgs~D~~V~iwd~~~-----------~~~~~~~~~gH~~~V~~v~fSpdg~  325 (365)
T 4h5i_A          262 -SKQVTNRFKGITSMDVDM----KGELAVLASNDNSIALVKLKD-----------LSMSKIFKQAHSFAITEVTISPDST  325 (365)
T ss_dssp             -EEEEESSCSCEEEEEECT----TSCEEEEEETTSCEEEEETTT-----------TEEEEEETTSSSSCEEEEEECTTSC
T ss_pred             -eeeecCCCCCeEeEEECC----CCCceEEEcCCCEEEEEECCC-----------CcEEEEecCcccCCEEEEEECCCCC
Confidence             223478999999999999    999999999999999999876           456766 479999999999999999


Q ss_pred             EEEEEeCCCcEEEEeC
Q psy1242         465 LVVSGSQLGPVLVHTT  480 (540)
Q Consensus       465 ~lasgs~Dg~v~iw~~  480 (540)
                      +|||||.|++|+||+.
T Consensus       326 ~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          326 YVASVSAANTIHIIKL  341 (365)
T ss_dssp             EEEEEETTSEEEEEEC
T ss_pred             EEEEEeCCCeEEEEEc
Confidence            9999999999999975

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.90  E-value=1.7e-22  Score=225.36  Aligned_cols=236  Identities=15%  Similarity=0.183  Sum_probs=176.9

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |...+..+.+.+++..++|+|.|++|++||..++... ...+|.+.|.    .+.|++|+..+++|+.+.... .+.+..
T Consensus       429 h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~----~~~~s~~~~~l~s~s~D~~i~-iwd~~~  503 (694)
T 3dm0_A          429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL----SVAFSLDNRQIVSASRDRTIK-LWNTLG  503 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE----EEEECTTSSCEEEEETTSCEE-EECTTS
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE----EEEEeCCCCEEEEEeCCCEEE-EEECCC
Confidence            4444556677788889999999999999999876533 3345765443    577899998777776544332 222111


Q ss_pred             C-------cCcceeeEEEEEEEecCCC-EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242         330 N-------FSQKLRVRHNCFVTTVDSR-FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS  401 (540)
Q Consensus       330 ~-------~~~~~~v~~~~~~~spdg~-~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~  401 (540)
                      .       ......-.+.|++|+|++. .++++|+.|++|++||+++++....+               .+|.+.|++++
T Consensus       504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---------------~~h~~~v~~v~  568 (694)
T 3dm0_A          504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---------------AGHTGYVSTVA  568 (694)
T ss_dssp             CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEE
T ss_pred             CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---------------cCCCCCEEEEE
Confidence            0       0011223478889999872 35899999999999999999888887               88999999999


Q ss_pred             eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-
Q psy1242         402 RSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-  480 (540)
Q Consensus       402 ~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-  480 (540)
                      |+|    +|++|++|+.|++|++||+..           ++++..+. +...|.+++|+|++.++++++ |+.|+||+. 
T Consensus       569 ~sp----dg~~l~sg~~Dg~i~iwd~~~-----------~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          569 VSP----DGSLCASGGKDGVVLLWDLAE-----------GKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             ECT----TSSEEEEEETTSBCEEEETTT-----------TEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred             EeC----CCCEEEEEeCCCeEEEEECCC-----------CceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence            999    999999999999999999876           33455554 456799999999998887766 566999977 


Q ss_pred             CCcEEEEecCCCC-----------------CCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         481 FGDLLRSLDPPSG-----------------FASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       481 ~g~~~~~l~~~~~-----------------~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      +++++..+..+..                 ...+.+++|+|+|++|++| .||.|++|++.
T Consensus       632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          632 SKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            6777777654321                 0136789999999999984 68999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.1e-22  Score=202.41  Aligned_cols=170  Identities=15%  Similarity=0.114  Sum_probs=139.0

Q ss_pred             EEEEEEecC--CCEEEEEEecCCcEEEEEccCCe--EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC--CcE
Q psy1242         339 HNCFVTTVD--SRFLLACGFWDNSFRVFSTDNAR--IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA--DCF  412 (540)
Q Consensus       339 ~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~--~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d--g~~  412 (540)
                      +.+++|+++  ++ +|++|+.||+|++||+.+++  .+..+               .+|...|++++|+|    +  +.+
T Consensus        58 v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~~~v~~~~~~~----~~~~~~  117 (379)
T 3jrp_A           58 VWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVH---------------AVHSASVNSVQWAP----HEYGPL  117 (379)
T ss_dssp             EEEEEECCGGGCS-EEEEEETTSCEEEEEEETTEEEEEEEE---------------CCCSSCEEEEEECC----GGGCSE
T ss_pred             EEEEEeCCCCCCC-EEEEeccCCEEEEEEcCCCceeEeeee---------------cCCCcceEEEEeCC----CCCCCE
Confidence            678888877  78 47999999999999999887  44455               78999999999999    7  899


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-------------CCCEEEEEeCCCcEEEEe
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-------------ELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-------------dg~~lasgs~Dg~v~iw~  479 (540)
                      |++++.|++|++||++...         ......+.+|...|.+++|+|             ++.++++|+.||.|++|+
T Consensus       118 l~~~~~d~~i~v~d~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d  188 (379)
T 3jrp_A          118 LLVASSDGKVSVVEFKENG---------TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK  188 (379)
T ss_dssp             EEEEETTSEEEEEECCTTS---------CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEE
T ss_pred             EEEecCCCcEEEEecCCCC---------ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999987642         234556789999999999999             699999999999999996


Q ss_pred             C-CC----cEEEEecCCCCCCCceEEEEeeC---CCEEEE-ecCCeEEEEecCCc----EEEee---ecCCcceec
Q psy1242         480 T-FG----DLLRSLDPPSGFASPESVVMSRE---GVIVVN-YERGHIAAFTMNGN----RLRHE---SHNDNLQKT  539 (540)
Q Consensus       480 ~-~g----~~~~~l~~~~~~~~v~~l~fspd---g~~l~s-~~dg~I~lw~~~g~----~l~~~---~~~~~V~~v  539 (540)
                      . ++    .++..+..|..  .|.+++|+|+   +.+|++ +.||.|++|+++..    .....   .+...|.++
T Consensus       189 ~~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  262 (379)
T 3jrp_A          189 YNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA  262 (379)
T ss_dssp             EETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE
T ss_pred             ecCCCcceeeEEEEecccC--cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEE
Confidence            5 33    35677888887  7899999999   888888 46899999998742    22222   266666655

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.90  E-value=5.3e-23  Score=216.52  Aligned_cols=245  Identities=11%  Similarity=0.021  Sum_probs=167.5

Q ss_pred             eecccceeeecC-CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~-~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |..+++.+.+.+ ++..++|+|.|++|++||..+........+. ........+.+++|+.++++|+.+... ..+.+.+
T Consensus       163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~i-~~wd~~~  240 (435)
T 4e54_B          163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD-TINIWFCSLDVSASSRMVVTGDNVGNV-ILLNMDG  240 (435)
T ss_dssp             SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS-SCSCCCCCEEEETTTTEEEEECSSSBE-EEEESSS
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC-CCCccEEEEEECCCCCEEEEEeCCCcE-eeeccCc
Confidence            444556666653 5677999999999999998764432222221 122233457789999888887544333 2222211


Q ss_pred             CcC---cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         330 NFS---QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       330 ~~~---~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                      ..-   ....-.+.+++|+|++..++++|+.|++|+|||+++++....+.            ...+|...|++++|+|  
T Consensus       241 ~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~------------~~~~h~~~v~~~~~sp--  306 (435)
T 4e54_B          241 KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL------------YSLPHRHPVNAACFSP--  306 (435)
T ss_dssp             CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS------------BCCBCSSCEEECCBCT--
T ss_pred             ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE------------EeeeccccccceeECC--
Confidence            100   01122378889999998788999999999999998766433220            1157999999999999  


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC------CEEEEEEcCCCCEEEEEe----------
Q psy1242         407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ------PVTSVAISAELGLVVSGS----------  470 (540)
Q Consensus       407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~------~V~~v~~spdg~~lasgs----------  470 (540)
                        +|.+|++|+.|++|+|||+...           .+...+.+|..      .+..+.|+|++..+++++          
T Consensus       307 --dg~~l~s~~~D~~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  373 (435)
T 4e54_B          307 --DGARLLTTDQKSEIRVYSASQW-----------DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT  373 (435)
T ss_dssp             --TSSEEEEEESSSCEEEEESSSS-----------SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred             --CCCeeEEEcCCCEEEEEECCCC-----------ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence              9999999999999999998763           33444444432      223445666666665554          


Q ss_pred             --CCCcEEEEeC-CCcEEEEecC-CCCCCCceEE-EEeeCCCEEEEecCCeEEEEecC-CcE
Q psy1242         471 --QLGPVLVHTT-FGDLLRSLDP-PSGFASPESV-VMSREGVIVVNYERGHIAAFTMN-GNR  526 (540)
Q Consensus       471 --~Dg~v~iw~~-~g~~~~~l~~-~~~~~~v~~l-~fspdg~~l~s~~dg~I~lw~~~-g~~  526 (540)
                        .++.|++|+. +|+++..+.. |..  .|.++ +|+|+|++|++|+|++|++|+++ |+.
T Consensus       374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~--~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~  433 (435)
T 4e54_B          374 PYELRTIDVFDGNSGKMMCQLYDPESS--GISSLNEFNPMGDTLASAMGYHILIWSQQEART  433 (435)
T ss_dssp             TTCCCCEEEECSSSCCEEEEECCSSCC--CCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred             ecCCCEEEEEECCCCcEEEEEeCCCCC--cEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence              3457999976 8888888764 444  56776 79999999999999999999987 543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.90  E-value=8e-22  Score=198.33  Aligned_cols=232  Identities=14%  Similarity=0.179  Sum_probs=162.1

Q ss_pred             ccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC----
Q psy1242         254 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD----  329 (540)
Q Consensus       254 ~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~----  329 (540)
                      .++...+.+++..+++++.|+.|++|+.............   ........+++++..+++++.+... ..+.+..    
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~s~d~~~-~~~d~~~~~~~  163 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH---TKDVLSVAFSSDNRQIVSGSRDKTI-KLWNTLGVCKY  163 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCE-EEECTTSCEEE
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCC---CCceeEEEEeecCccceeecCCCeE-EEEEeCCCceE
Confidence            3444455556666999999999999998765432222111   1111234455555555554332221 1111111    


Q ss_pred             ---CcCcceeeEEEEEEEecCCC-EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242         330 ---NFSQKLRVRHNCFVTTVDSR-FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC  405 (540)
Q Consensus       330 ---~~~~~~~v~~~~~~~spdg~-~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~  405 (540)
                         ...+..  .+.++++++++. .++++++.|++|++||+++++.+..+               .+|.+.|++++|+| 
T Consensus       164 ~~~~~~~~~--~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~---------------~~h~~~v~~~~~s~-  225 (340)
T 4aow_A          164 TVQDESHSE--WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH---------------IGHTGYLNTVTVSP-  225 (340)
T ss_dssp             EECSSSCSS--CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEECT-
T ss_pred             EEEeccccC--cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe---------------cCCCCcEEEEEECC-
Confidence               111112  255666676643 25789999999999999999988888               78999999999999 


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcE
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDL  484 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~  484 (540)
                         ++++|++|+.|++|++||++.           .+++..+.+ ...|.+++|+|++.+ ++++.|+.|++|+. ++..
T Consensus       226 ---~~~~l~s~s~Dg~i~iwd~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~  289 (340)
T 4aow_A          226 ---DGSLCASGGKDGQAMLWDLNE-----------GKHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKII  289 (340)
T ss_dssp             ---TSSEEEEEETTCEEEEEETTT-----------TEEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEE
T ss_pred             ---CCCEEEEEeCCCeEEEEEecc-----------CceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeE
Confidence               999999999999999999876           345666654 467999999998765 45667999999987 4555


Q ss_pred             EEEec---------CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-Cc
Q psy1242         485 LRSLD---------PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GN  525 (540)
Q Consensus       485 ~~~l~---------~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~  525 (540)
                      +..+.         .|..  .|.+++|+|+|++|++ +.||.|++|++. |.
T Consensus       290 ~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          290 VDELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEECCC-------CCCC--CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEeccccceeeeccCCCC--CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            55554         3444  7899999999999998 568999999986 53

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.90  E-value=4.8e-22  Score=198.24  Aligned_cols=190  Identities=13%  Similarity=0.071  Sum_probs=146.6

Q ss_pred             CccccCCCCeeeccCCCCCCccccccCC-------CcCcceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCe--
Q psy1242         302 NLPLTLDPILTHPTSNNNAPVPKRHLGD-------NFSQKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNAR--  370 (540)
Q Consensus       302 ~~~~s~D~~l~~~g~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~--  370 (540)
                      .+.|++|+.++++|+.+... ..+.+..       .+. ...-.+.+++|+++  ++ +|++|+.|++|+|||+++++  
T Consensus        14 ~~~~s~~g~~las~s~D~~v-~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iWd~~~~~~~   90 (297)
T 2pm7_B           14 DAVMDYYGKRMATCSSDKTI-KIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGT-ILASCSYDGKVMIWKEENGRWS   90 (297)
T ss_dssp             EEEECTTSSEEEEEETTSCE-EEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCS-EEEEEETTTEEEEEEBSSSCBC
T ss_pred             EEEECCCCCEEEEEeCCCEE-EEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCC-EEEEEcCCCEEEEEEcCCCceE
Confidence            46788999888877654433 2222211       111 11223778888764  77 58999999999999998774  


Q ss_pred             EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec
Q psy1242         371 IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT  448 (540)
Q Consensus       371 ~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~  448 (540)
                      .+..+               .+|...|.+++|+|    +  |.+|++|+.|++|++||++....         .....+.
T Consensus        91 ~~~~~---------------~~h~~~v~~v~~~p----~~~g~~l~s~s~d~~v~~wd~~~~~~---------~~~~~~~  142 (297)
T 2pm7_B           91 QIAVH---------------AVHSASVNSVQWAP----HEYGPMLLVASSDGKVSVVEFKENGT---------TSPIIID  142 (297)
T ss_dssp             CCEEE---------------CCCSSCEEEEEECC----GGGCSEEEEEETTSEEEEEEBCSSSC---------BCCEEEE
T ss_pred             EEEEe---------------ecCCCceeEEEeCc----CCCCcEEEEEECCCcEEEEEecCCCc---------eeeeeee
Confidence            33444               78999999999999    6  88999999999999999875321         1245678


Q ss_pred             cCCCCEEEEEEcCC-------------CCEEEEEeCCCcEEEEeC-CCc----EEEEecCCCCCCCceEEEEeeCC---C
Q psy1242         449 GHEQPVTSVAISAE-------------LGLVVSGSQLGPVLVHTT-FGD----LLRSLDPPSGFASPESVVMSREG---V  507 (540)
Q Consensus       449 ~h~~~V~~v~~spd-------------g~~lasgs~Dg~v~iw~~-~g~----~~~~l~~~~~~~~v~~l~fspdg---~  507 (540)
                      +|...|.+++|+|+             +++|++|+.|++|++|+. +++    +..++.+|..  .|.+++|+|++   .
T Consensus       143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~--~V~~v~~sp~~~~~~  220 (297)
T 2pm7_B          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRS  220 (297)
T ss_dssp             CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSE
T ss_pred             cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC--ceEEEEECCCCCCce
Confidence            99999999999997             579999999999999975 444    6678899988  78999999995   7


Q ss_pred             EEEE-ecCCeEEEEecCC
Q psy1242         508 IVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       508 ~l~s-~~dg~I~lw~~~g  524 (540)
                      +|++ +.|++|++|+++.
T Consensus       221 ~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          221 YMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEEEETTSCEEEEEESS
T ss_pred             EEEEEECCCcEEEEEeCC
Confidence            8887 5689999999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6e-23  Score=212.79  Aligned_cols=235  Identities=11%  Similarity=0.093  Sum_probs=174.8

Q ss_pred             cCcceEEEEcCCCCC---cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-----cC---cceeeEE
Q psy1242         271 NHQFAINRWNPDYAA---SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-----FS---QKLRVRH  339 (540)
Q Consensus       271 s~D~tv~~W~~~~~~---~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-----~~---~~~~v~~  339 (540)
                      +.|++|++|+.....   ......|..    ....+.|++|+.++++++.+... ..+.+...     ..   ....-.+
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~v-~vw~~~~~~~~~~~~~~~~~h~~~v  116 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASLQVDS----KFNDLDWSHNNKIIAGALDNGSL-ELYSTNEANNAINSMARFSNHSSSV  116 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCCCCSS----CEEEEEECSSSSCEEEEESSSCE-EEECCSSTTSCCCEEEECCCSSSCC
T ss_pred             CCCCeEEEEEccCCCCCcEEEEEecCC----ceEEEEECCCCCeEEEEccCCeE-EEeecccccccccchhhccCCccce
Confidence            899999999998654   223334432    23467889999877776543222 22222220     00   0111236


Q ss_pred             EEEEEecC-CCEEEEEEecCCcEEEEEccCCe------EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC-Cc
Q psy1242         340 NCFVTTVD-SRFLLACGFWDNSFRVFSTDNAR------IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA-DC  411 (540)
Q Consensus       340 ~~~~~spd-g~~llasgs~Dgsv~iwd~~~g~------~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-g~  411 (540)
                      .+++|+|+ ++ +|++|+.|++|++||+.+++      ....+            ..+.+|.+.|++++|+|    + +.
T Consensus       117 ~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~----~~~~  179 (416)
T 2pm9_A          117 KTVKFNAKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTP------------GQSMSSVDEVISLAWNQ----SLAH  179 (416)
T ss_dssp             CEEEECSSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCC------------CCSCCSSCCCCEEEECS----SCTT
T ss_pred             EEEEEcCCCCC-EEEEEcCCCeEEEEECCCCcccccccccccc------------ccccCCCCCeeEEEeCC----CCCc
Confidence            78889998 66 58999999999999999876      22111            11157999999999999    7 78


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC------CCCEEEEEEcCCC-CEEEEEeCCC---cEEEEeC-
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH------EQPVTSVAISAEL-GLVVSGSQLG---PVLVHTT-  480 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h------~~~V~~v~~spdg-~~lasgs~Dg---~v~iw~~-  480 (540)
                      +|++++.|++|++||++.           .+++..+..|      ...|.+++|+|++ .++++++.|+   .|++|+. 
T Consensus       180 ~l~~~~~dg~v~iwd~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~  248 (416)
T 2pm9_A          180 VFASAGSSNFASIWDLKA-----------KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR  248 (416)
T ss_dssp             EEEEESSSSCEEEEETTT-----------TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred             EEEEEcCCCCEEEEECCC-----------CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence            999999999999999876           3456666665      7899999999997 6899999999   9999976 


Q ss_pred             CC-cEEEEec-CCCCCCCceEEEEee-CCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         481 FG-DLLRSLD-PPSGFASPESVVMSR-EGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       481 ~g-~~~~~l~-~~~~~~~v~~l~fsp-dg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      ++ ..+..+. +|..  .|.+++|+| ++++|+++ .|+.|++|+++ ++.+..+. |.+.|.+++
T Consensus       249 ~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~  312 (416)
T 2pm9_A          249 NANTPLQTLNQGHQK--GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK  312 (416)
T ss_dssp             STTSCSBCCCSCCSS--CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred             CCCCCcEEeecCccC--ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence            43 5667777 7777  789999999 89988884 68999999987 78887775 788887653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.90  E-value=1.7e-22  Score=207.94  Aligned_cols=238  Identities=8%  Similarity=-0.040  Sum_probs=169.4

Q ss_pred             cccceeeecC-CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc
Q psy1242         253 TANTYVTLHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF  331 (540)
Q Consensus       253 ~~~~~~~~~~-~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~  331 (540)
                      ..+....+.+ +...+++++.|++|++||..+........+.. .......+.+++|+..+++++.+... ..+.+....
T Consensus       119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i-~i~d~~~~~  196 (383)
T 3ei3_B          119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDSTGRL-LLLGLDGHE  196 (383)
T ss_dssp             CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETTSEE-EEEETTSCE
T ss_pred             CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCCCCE-EEEECCCCE
Confidence            3344555555 56889999999999999998533222222221 11223467889999888877544332 222221110


Q ss_pred             Cc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC----CeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         332 SQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN----ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       332 ~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~----g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      ..   ...-.+.+++|+|+++.++++|+.|++|++||+++    +..+..+                +|.+.|++++|+|
T Consensus       197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~~~~s~  260 (383)
T 3ei3_B          197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----------------PHEKPVNAAYFNP  260 (383)
T ss_dssp             EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----------------ECSSCEEEEEECT
T ss_pred             EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----------------cCCCceEEEEEcC
Confidence            00   01123788999999995689999999999999997    4555444                6899999999998


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC-----------------CCCEEEEEEcCCCCEEE
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-----------------EQPVTSVAISAELGLVV  467 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-----------------~~~V~~v~~spdg~~la  467 (540)
                      .   ++++|++++.|++|++||++...           ....+.+|                 ...+.+++++|++++  
T Consensus       261 ~---~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--  324 (383)
T 3ei3_B          261 T---DSTKLLTTDQRNEIRVYSSYDWS-----------KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--  324 (383)
T ss_dssp             T---TSCEEEEEESSSEEEEEETTBTT-----------SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred             C---CCCEEEEEcCCCcEEEEECCCCc-----------cccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence            4   68899999999999999987633           22333322                 234556777777776  


Q ss_pred             EEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCC
Q psy1242         468 SGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  524 (540)
Q Consensus       468 sgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g  524 (540)
                      +|+.||.|++|+. +++++..+.++.....+..++|+|+|++|++++|+.|++|++++
T Consensus       325 s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          325 LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence            7889999999986 89999999875422267788999999999998899999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=7.8e-23  Score=206.15  Aligned_cols=239  Identities=13%  Similarity=0.059  Sum_probs=176.4

Q ss_pred             cEEEEEccCcceEEEEcCCCCC----cccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCcccccc-CCCcC---cc
Q psy1242         264 SVVTVTANHQFAINRWNPDYAA----SIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHL-GDNFS---QK  334 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~----~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~-~~~~~---~~  334 (540)
                      +..+++++.|++|++|+.....    ......|...+    ..+.+++++. ++++|+.+... ..+.+ .....   ..
T Consensus        23 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~l~~~~~dg~i-~~wd~~~~~~~~~~~~   97 (342)
T 1yfq_A           23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL----LCCNFIDNTDLQIYVGTVQGEI-LKVDLIGSPSFQALTN   97 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCE----EEEEEEESSSEEEEEEETTSCE-EEECSSSSSSEEECBS
T ss_pred             CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCce----EEEEECCCCCcEEEEEcCCCeE-EEEEeccCCceEeccc
Confidence            3348999999999999987655    33334454333    3577888888 67666543322 22222 11100   11


Q ss_pred             --eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC---------CeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242         335 --LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN---------ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       335 --~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~---------g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s  403 (540)
                        ..-.+.+++|+| +. ++++|+.|+.|++||+++         ++.+..+               . |.+.|.+++|+
T Consensus        98 ~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------~-~~~~v~~~~~~  159 (342)
T 1yfq_A           98 NEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT---------------K-VKNKIFTMDTN  159 (342)
T ss_dssp             CCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS---------------S-SCCCEEEEEEC
T ss_pred             cCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEE---------------e-eCCceEEEEec
Confidence              222367888899 87 478999999999999986         5444433               3 88999999999


Q ss_pred             cCccCCCcEEEEEeCCCcEEEEEcCC-CcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-
Q psy1242         404 ECNITADCFIASGSADCTVLLWHWNA-RTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-  480 (540)
Q Consensus       404 p~~~~dg~~l~sgs~DgtV~lWd~~~-~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-  480 (540)
                      |    ++  +++++.|+.|++||++. ...         ........|...|.+++|+| ++.++++++.||.|++|+. 
T Consensus       160 ~----~~--l~~~~~d~~i~i~d~~~~~~~---------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          160 S----SR--LIVGMNNSQVQWFRLPLCEDD---------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             S----SE--EEEEESTTEEEEEESSCCTTC---------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             C----Cc--EEEEeCCCeEEEEECCccccc---------cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence            8    55  99999999999999875 321         23345567889999999999 9999999999999999965 


Q ss_pred             CC------cEEEEecCCCC-------CCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-c-CCcceecC
Q psy1242         481 FG------DLLRSLDPPSG-------FASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-H-NDNLQKTA  540 (540)
Q Consensus       481 ~g------~~~~~l~~~~~-------~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~-~~~V~~va  540 (540)
                      .+      +.+..+..|..       ...|.+++|+|+|++|+++ .||.|++|+++ ++.+..+. | .+.|.+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred             CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence            33      66777777643       1268999999999988884 68999999998 77787776 6 88888764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=1.6e-21  Score=195.46  Aligned_cols=238  Identities=13%  Similarity=0.050  Sum_probs=175.3

Q ss_pred             CCcEEEEEccCcceEEEEcCCCC-CcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-----cCc--
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYA-ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-----FSQ--  333 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~-~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-----~~~--  333 (540)
                      +++..++.+..+..+..|..... ......+|.+.+    ..+.+++|+.++++++  ......+.+...     ...  
T Consensus        19 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~   92 (337)
T 1gxr_A           19 ADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVV----CAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLD   92 (337)
T ss_dssp             SSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCC----CEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEE
T ss_pred             CCCCEEEeecCCCcEeccccCCccccceeccCCCce----EEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeeccc
Confidence            33333666655555555544322 222334565443    3678999998888775  223333333211     100  


Q ss_pred             --ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe--EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         334 --KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR--IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       334 --~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~--~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                        ...-.+.+++|+|+++. |++|+.|+.|++||+.+++  ....+               .+|...|++++|+|    +
T Consensus        93 ~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~---------------~~~~~~i~~~~~~~----~  152 (337)
T 1gxr_A           93 CLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAEL---------------TSSAPACYALAISP----D  152 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSE-EEEEESSSEEEEEECCCC--EEEEEE---------------ECSSSCEEEEEECT----T
T ss_pred             ccCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCCcceeeec---------------ccCCCceEEEEECC----C
Confidence              11224788899999995 7899999999999999876  33444               78999999999999    9


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      +++|++++.|+.|++||++.           .+++..+.+|...|.+++|+|++.++++++.||.|++|+. +++.+..+
T Consensus       153 ~~~l~~~~~dg~v~~~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  221 (337)
T 1gxr_A          153 SKVCFSCCSDGNIAVWDLHN-----------QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH  221 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCC-----------CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee
Confidence            99999999999999999876           4577888999999999999999999999999999999986 67777776


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCC-cEEEeeecCCcceec
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG-NRLRHESHNDNLQKT  539 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g-~~l~~~~~~~~V~~v  539 (540)
                      .. ..  .+.+++|+|+|++++++ .++.|++|+++. +......|.+.|.++
T Consensus       222 ~~-~~--~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~  271 (337)
T 1gxr_A          222 DF-TS--QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL  271 (337)
T ss_dssp             EC-SS--CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEE
T ss_pred             cC-CC--ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEE
Confidence            53 44  68999999999999985 589999999984 444333477877765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.89  E-value=4.4e-22  Score=224.96  Aligned_cols=241  Identities=14%  Similarity=0.091  Sum_probs=184.0

Q ss_pred             CCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-C---ccee
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-S---QKLR  336 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~---~~~~  336 (540)
                      +++..+++++.|++|++|+..++..... .+|.+.|    ..+.|++|+..+++|+.+... ..+.+.... .   ....
T Consensus        23 p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~~~dg~i-~vw~~~~~~~~~~~~~~~   97 (814)
T 3mkq_A           23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPV----RAGKFIARKNWIIVGSDDFRI-RVFNYNTGEKVVDFEAHP   97 (814)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE----EEEEEEGGGTEEEEEETTSEE-EEEETTTCCEEEEEECCS
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcE----EEEEEeCCCCEEEEEeCCCeE-EEEECCCCcEEEEEecCC
Confidence            3333499999999999999877654332 2354333    367899999877777543322 222221110 0   0111


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCC-eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA-RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g-~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      -.+.+++|+|++++ |++|+.||+|++||++++ .....+               .+|...|++++|+|.   ++..|++
T Consensus        98 ~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~---------------~~~~~~v~~~~~~p~---~~~~l~~  158 (814)
T 3mkq_A           98 DYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTF---------------EGHEHFVMCVAFNPK---DPSTFAS  158 (814)
T ss_dssp             SCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEE---------------ECCSSCEEEEEEETT---EEEEEEE
T ss_pred             CCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEE---------------cCCCCcEEEEEEEcC---CCCEEEE
Confidence            23788899999996 789999999999999987 555666               789999999999983   5789999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC-CCCEEEEEEcC--CCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-EQPVTSVAISA--ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~sp--dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      |+.||+|++||+...           .+...+..+ ...+.+++|+|  ++.++++|+.||.|++|+. +++.+..+.+|
T Consensus       159 ~~~dg~v~vwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  227 (814)
T 3mkq_A          159 GCLDRTVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH  227 (814)
T ss_dssp             EETTSEEEEEETTCS-----------SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             EeCCCeEEEEECCCC-----------cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            999999999998752           344555544 48899999999  9999999999999999975 78889999988


Q ss_pred             CCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         492 SGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                      ..  .|.+++|+|+|.+|+++ .||.|++|++. ++.+..+. +.+.|.++
T Consensus       228 ~~--~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~  276 (814)
T 3mkq_A          228 MS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI  276 (814)
T ss_dssp             SS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred             CC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence            87  78999999999999885 58999999988 77777765 66666665

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.89  E-value=3.5e-22  Score=207.69  Aligned_cols=243  Identities=9%  Similarity=0.016  Sum_probs=173.4

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-cC---c
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FS---Q  333 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-~~---~  333 (540)
                      .+++++..+++++.|++|++|+......... ..|.+.|    ..+.|++|+.++++++.+... ..+.+... ..   .
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v----~~~~~~~~~~~l~s~s~d~~i-~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEI----TKLKFFPSGEALISSSQDMQL-KIWSVKDGSNPRTLI  178 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCE----EEEEECTTSSEEEEEETTSEE-EEEETTTCCCCEEEE
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCcc----EEEEECCCCCEEEEEeCCCeE-EEEeCCCCcCceEEc
Confidence            4555666799999999999999887665444 3565443    367899999877777544332 22222211 00   0


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccc---ceeeeeeEE------EeeccCcceEEEEecc
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHY---GVVTSRIVQ------IIFGHYGVVTCLSRSE  404 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~---~~v~~~~~~------~l~~h~~~Vt~l~~sp  404 (540)
                      ...-.+.+++|+|+++. |++|+.|++|++||+++++.+..+..|.   ..+.+-...      ....|...+++++|+|
T Consensus       179 ~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          179 GHRATVTDIAIIDRGRN-VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             CCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             CCCCcEEEEEEcCCCCE-EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            11223788899999995 7899999999999999999998886433   222221110      0122456777788889


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-C
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT-F  481 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~-~  481 (540)
                          ++++|++|+.||+|++||++..           +.+..+ .+|...|++++|+|++. +|++|+.||.|++|+. +
T Consensus       258 ----~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          258 ----YGKYVIAGHVSGVITVHNVFSK-----------EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             ----TTEEEEEEETTSCEEEEETTTC-----------CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             ----CCCEEEEEcCCCeEEEEECCCC-----------ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence                9999999999999999998763           333343 56889999999999999 9999999999999977 4


Q ss_pred             C-cEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCC
Q psy1242         482 G-DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNG  524 (540)
Q Consensus       482 g-~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g  524 (540)
                      + .++..+..+... .|.++. .+++++|+++ .|+.|++|++..
T Consensus       323 ~~~~~~~~~~~~~~-~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          323 PECPVGEFLINEGT-PINNVY-FAAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             TTSCSEEEEESTTS-CEEEEE-EETTEEEEEETTTEEEEEEEECC
T ss_pred             CcCchhhhhccCCC-CceEEE-eCCCCEEEEecCCccEEEEeccC
Confidence            4 346667664432 577774 5678888875 589999999763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.6e-21  Score=196.19  Aligned_cols=220  Identities=11%  Similarity=0.072  Sum_probs=171.2

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  334 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~  334 (540)
                      ++...+.+++..+++++.|+.|++|+..++...                                     ..+..+.   
T Consensus        35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-------------------------------------~~~~~h~---   74 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL-------------------------------------GTLDGHT---   74 (369)
T ss_dssp             EEEEEECTTSCEEEEEESSSCEEEEETTTCCEE-------------------------------------EEECCCS---
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh-------------------------------------hhhhhcC---
Confidence            333444445555999999999999997542211                                     0111111   


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                        -.+.+++|+|++++ |++++.||+|++||+.+++.+..+               . |...|.+++|+|    ++.+|+
T Consensus        75 --~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~---------------~-~~~~v~~~~~~~----~~~~l~  131 (369)
T 3zwl_B           75 --GTIWSIDVDCFTKY-CVTGSADYSIKLWDVSNGQCVATW---------------K-SPVPVKRVEFSP----CGNYFL  131 (369)
T ss_dssp             --SCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEEEE---------------E-CSSCEEEEEECT----TSSEEE
T ss_pred             --CcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEEEe---------------e-cCCCeEEEEEcc----CCCEEE
Confidence              12678889999995 789999999999999999988877               4 788999999999    999999


Q ss_pred             EEeCC-----CcEEEEEcCCCcccccCCCCCCcceEEeccCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEeC-C-CcEE
Q psy1242         415 SGSAD-----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ--PVTSVAISAELGLVVSGSQLGPVLVHTT-F-GDLL  485 (540)
Q Consensus       415 sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~v~~spdg~~lasgs~Dg~v~iw~~-~-g~~~  485 (540)
                      +++.+     +.|++||+...............+...+.+|..  .+.+++|+|+++++++++.||.|++|+. + ++.+
T Consensus       132 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  211 (369)
T 3zwl_B          132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYV  211 (369)
T ss_dssp             EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEE
T ss_pred             EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeE
Confidence            99999     999999987643211100111235566777777  9999999999999999999999999987 4 6888


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      ..+..|..  .|.+++|+|++.+|+++ .|+.|++||+. ++.+..+.+...+.++
T Consensus       212 ~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  265 (369)
T 3zwl_B          212 DSIDLHEK--SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTA  265 (369)
T ss_dssp             EEEECCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred             EEEecCCC--ceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeE
Confidence            89988887  78999999999999885 68999999987 7787777777666654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=2e-21  Score=203.35  Aligned_cols=187  Identities=17%  Similarity=0.207  Sum_probs=157.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------eeEEEeec
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------RIVQIIFG  392 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------~~~~~l~~  392 (540)
                      +.|++|+|+|++ ||+|+.||+|+|||+++++.+..+.+|...+.+                          ..+..+.+
T Consensus       150 V~sv~fspdg~~-lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~  228 (420)
T 4gga_A          150 ISSVAWIKEGNY-LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG  228 (420)
T ss_dssp             EEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred             EEEEEECCCCCE-EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence            678888999995 789999999999999999999888888876643                          34567789


Q ss_pred             cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEE--E
Q psy1242         393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVS--G  469 (540)
Q Consensus       393 h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~las--g  469 (540)
                      |...+.++.++|    ++.++++++.|+.|++|+.......       ...+.....|...|.+++|+|.+. ++++  |
T Consensus       229 h~~~~~~~~~~~----~g~~l~s~~~D~~v~i~~~~~~~~~-------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g  297 (420)
T 4gga_A          229 HSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGEGG-------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG  297 (420)
T ss_dssp             CSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCCSSC-------SCCSEEECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred             cccceeeeeecC----CCCeeeeeeccccceEEeecccccc-------ceeeeeecccCCceeeeeeCCCcccEEEEEee
Confidence            999999999999    9999999999999999998764321       245677889999999999999765 5554  4


Q ss_pred             eCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe---cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         470 SQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY---ERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       470 s~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~---~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      +.|++|++|+. +++++..+..+.   .+.++.|+++++.++++   .|+.|++||+. ++.+..+. |.+.|++|+
T Consensus       298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~  371 (420)
T 4gga_A          298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT  371 (420)
T ss_dssp             TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            57999999976 888888887765   57899999999988864   47999999986 88888886 999999874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=1e-21  Score=203.93  Aligned_cols=169  Identities=18%  Similarity=0.211  Sum_probs=142.0

Q ss_pred             EEEEEEec-CCCEEEEEEecCCcEEEEEccCC-------eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNA-------RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g-------~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                      +.+++|+| +++ +|++|+.||+|+|||+.++       +.+..+               .+|.+.|++++|+|    ++
T Consensus        84 V~~~~~~p~~~~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~---------------~~h~~~v~~~~~~p----~~  143 (402)
T 2aq5_A           84 VLDIAWCPHNDN-VIASGSEDCTVMVWEIPDGGLVLPLREPVITL---------------EGHTKRVGIVAWHP----TA  143 (402)
T ss_dssp             EEEEEECTTCTT-EEEEEETTSEEEEEECCTTCCSSCBCSCSEEE---------------ECCSSCEEEEEECS----SB
T ss_pred             EEEEEeCCCCCC-EEEEEeCCCeEEEEEccCCCCccccCCceEEe---------------cCCCCeEEEEEECc----CC
Confidence            78889999 787 5899999999999999987       344555               88999999999999    77


Q ss_pred             -cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEE
Q psy1242         411 -CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLR  486 (540)
Q Consensus       411 -~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~  486 (540)
                       .+|++|+.|++|++||++.           ++++..+  .+|...|.+++|+|++.+|++++.||.|++|+. +++.+.
T Consensus       144 ~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  212 (402)
T 2aq5_A          144 QNVLLSAGCDNVILVWDVGT-----------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA  212 (402)
T ss_dssp             TTEEEEEETTSCEEEEETTT-----------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCC-----------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence             6999999999999999876           4567788  889999999999999999999999999999986 788888


Q ss_pred             Ee-cCCCCCCCceEEEEeeCCCEEEEe----cCCeEEEEecC-CcE---EEeeecCCcceec
Q psy1242         487 SL-DPPSGFASPESVVMSREGVIVVNY----ERGHIAAFTMN-GNR---LRHESHNDNLQKT  539 (540)
Q Consensus       487 ~l-~~~~~~~~v~~l~fspdg~~l~s~----~dg~I~lw~~~-g~~---l~~~~~~~~V~~v  539 (540)
                      .+ ..|.+. .+.+++|+|+|++|++|    .++.|++||++ ++.   +....+...|.++
T Consensus       213 ~~~~~~~~~-~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          213 EKDRPHEGT-RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             EEECSSCSS-SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             eeccCCCCC-cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            88 677662 37899999999999987    68999999987 332   2223355556554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.9e-22  Score=202.11  Aligned_cols=226  Identities=8%  Similarity=-0.013  Sum_probs=152.5

Q ss_pred             CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCC---CCccccCCCCeeeccCCCCCCccccccCC-----CcCc
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPP---GNLPLTLDPILTHPTSNNNAPVPKRHLGD-----NFSQ  333 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~---~~~~~s~D~~l~~~g~~~~~~~~~~~~~~-----~~~~  333 (540)
                      .+...++|++.|++|++||..++....... ...+....   ..++.+.|+.+.+.....  ......+..     ....
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~~~s~s~D~~i~~w~~~~--~~~~~~~~~~~~~~~~~~  122 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPAIISRGPCNRLLLLYPGN--QITILDSKTNKVLREIEV  122 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCSEEEECSTTEEEEEETTT--EEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCceEEecCCCeEEEEEccC--ceEEeecCCcceeEEeec
Confidence            356679999999999999998765433222 11121100   022333344333221000  000000000     0000


Q ss_pred             ceeeEEEEEEEec--CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         334 KLRVRHNCFVTTV--DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       334 ~~~v~~~~~~~sp--dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      ...-.+.+++++|  ++++ +++|+.||+|++||+++++......              ..|...|++++|+|    +|.
T Consensus       123 ~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~--------------~~~~~~i~~~~~~p----dg~  183 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHS--------------AKSDVEYSSGVLHK----DSL  183 (343)
T ss_dssp             CCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEEEEEC--------------CCSSCCCCEEEECT----TSC
T ss_pred             CCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEe--------------cCCCCceEEEEECC----CCC
Confidence            0112378899999  9995 7999999999999999998866551              24556899999999    999


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcce-EEecc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPR-ATLTG-HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~-h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      +|++|+.|++|++||++..           +.+ ..+.+ |...|++++|+|++.+|++++ |++|++|+. +++.+..+
T Consensus       184 ~lasg~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~  251 (343)
T 3lrv_A          184 LLALYSPDGILDVYNLSSP-----------DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY  251 (343)
T ss_dssp             EEEEECTTSCEEEEESSCT-----------TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred             EEEEEcCCCEEEEEECCCC-----------CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee
Confidence            9999999999999998863           344 67777 999999999999999999999 559999976 55554444


Q ss_pred             cC---CCCCCCce--EEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242         489 DP---PSGFASPE--SVVMSREGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       489 ~~---~~~~~~v~--~l~fspdg~~l~s~--~dg~I~lw~~~  523 (540)
                      ..   +..  .+.  +++|+|+|++|+++  +++.|++|+.+
T Consensus       252 ~~~~~~~~--~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          252 PTYTIPEF--KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             CCCBC-------CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccc--cccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            43   222  333  69999999999983  38999999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.89  E-value=1.4e-22  Score=207.86  Aligned_cols=208  Identities=13%  Similarity=0.052  Sum_probs=153.1

Q ss_pred             CCCccccCCCCeeeccCCCCCCccccccC-------CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe--
Q psy1242         300 PGNLPLTLDPILTHPTSNNNAPVPKRHLG-------DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR--  370 (540)
Q Consensus       300 ~~~~~~s~D~~l~~~g~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~--  370 (540)
                      ...+.|++|+.++++|+.+... ..+.+.       ..+. ...-.+.+++|+|++++ |++|+.|++|++||+.+++  
T Consensus        14 v~~~~~s~~g~~l~~~~~d~~i-~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~-l~s~s~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTTATNQV-ELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNR-IVTCSQDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             CSCCEECSSSSEEECCCSSSCB-CEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCC-EEEEETTSSEEEC------CC
T ss_pred             EEEEEECCCCCEEEEecCCCEE-EEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCCce
Confidence            3467899999888887544333 111111       1111 11223788899999995 7999999999999999876  


Q ss_pred             -EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc
Q psy1242         371 -IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG  449 (540)
Q Consensus       371 -~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~  449 (540)
                       ....+               .+|.+.|++++|+|    ++++|++|+.|++|++||++....        ......+.+
T Consensus        91 ~~~~~~---------------~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~  143 (377)
T 3dwl_C           91 KQTLVL---------------LRLNRAATFVRWSP----NEDKFAVGSGARVISVCYFEQEND--------WWVSKHLKR  143 (377)
T ss_dssp             CCEEEC---------------CCCSSCEEEEECCT----TSSCCEEEESSSCEEECCC-------------CCCCEEECS
T ss_pred             eeeeEe---------------cccCCceEEEEECC----CCCEEEEEecCCeEEEEEECCccc--------ceeeeEeec
Confidence             44444               78999999999999    999999999999999999876321        124677777


Q ss_pred             -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-------------------CCcEEEEecCCCCCCCceEEEEeeCCCEE
Q psy1242         450 -HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-------------------FGDLLRSLDPPSGFASPESVVMSREGVIV  509 (540)
Q Consensus       450 -h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-------------------~g~~~~~l~~~~~~~~v~~l~fspdg~~l  509 (540)
                       |...|.+++|+|++++|++|+.||+|++|+.                   .++++..+ .|..  .|.+++|+|+|++|
T Consensus       144 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~v~~~~~sp~~~~l  220 (377)
T 3dwl_C          144 PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG--WVHAVGFSPSGNAL  220 (377)
T ss_dssp             SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS--SEEEEEECTTSSCE
T ss_pred             ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc--eEEEEEECCCCCEE
Confidence             9999999999999999999999999999975                   25667777 7776  78999999999988


Q ss_pred             EE-ecCCeEEEEecC-CcE----EEeee-cCCcceecC
Q psy1242         510 VN-YERGHIAAFTMN-GNR----LRHES-HNDNLQKTA  540 (540)
Q Consensus       510 ~s-~~dg~I~lw~~~-g~~----l~~~~-~~~~V~~va  540 (540)
                      ++ +.|+.|++|++. ++.    +..+. |...|.+++
T Consensus       221 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  258 (377)
T 3dwl_C          221 AYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL  258 (377)
T ss_dssp             EEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEE
T ss_pred             EEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEE
Confidence            88 468999999987 544    45554 777777763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=4.9e-21  Score=190.69  Aligned_cols=187  Identities=17%  Similarity=0.185  Sum_probs=153.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee--------------------------eeEEEeec
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS--------------------------RIVQIIFG  392 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~--------------------------~~~~~l~~  392 (540)
                      +.+++|+|++++ +++|+.||+|++||+++++.+..+.+|...+.+                          ..+..+.+
T Consensus        70 V~~v~~~~~~~~-l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~  148 (318)
T 4ggc_A           70 ISSVAWIKEGNY-LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG  148 (318)
T ss_dssp             EEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred             EEEEEECCCCCE-EEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcC
Confidence            688899999995 799999999999999999999999988876543                          34567789


Q ss_pred             cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE---EEEE
Q psy1242         393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL---VVSG  469 (540)
Q Consensus       393 h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~---lasg  469 (540)
                      |...+.++++++    ++++|++++.|++|++||+++....       .........|...|.+++++|++..   ++++
T Consensus       149 ~~~~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  217 (318)
T 4ggc_A          149 HSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGEGG-------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG  217 (318)
T ss_dssp             CSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCBTTB-------SCCSEEECCCCSCEEEEEECTTSTTEEEEEEC
T ss_pred             ccCceEEEEEcC----CCCEEEEEecCcceeEEECCCCccc-------ccceeeecccCCceEEEEecCCCCcEEEEEec
Confidence            999999999999    9999999999999999998764422       2345667788999999999997753   3467


Q ss_pred             eCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe---cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         470 SQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY---ERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       470 s~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~---~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      +.+++|++|+. .+....... +..  .+..++|+|++..++++   .|+.|++||+. ++.+..+. |.+.|++|+
T Consensus       218 ~~~~~i~lwd~~~~~~~~~~~-~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~  291 (318)
T 4ggc_A          218 TSDRHIRIWNVCSGACLSAVD-AHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT  291 (318)
T ss_dssp             TTTCEEEEEETTTCCEEEEEE-CSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CCCCEEEEEeccccccccccc-cee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            78999999977 444444444 344  68999999999988763   48999999987 88888886 999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.89  E-value=1.2e-21  Score=198.27  Aligned_cols=243  Identities=10%  Similarity=0.041  Sum_probs=169.2

Q ss_pred             ccceeeecCC---cEEEEEccCcceEEEEcCCCCC-cc-cCCCCcCCCCCCC--CCccccCCCCeeeccCCCCCCccccc
Q psy1242         254 ANTYVTLHMP---SVVTVTANHQFAINRWNPDYAA-SI-QSPSYAETPGSPP--GNLPLTLDPILTHPTSNNNAPVPKRH  326 (540)
Q Consensus       254 ~~~~~~~~~~---~~~lvs~s~D~tv~~W~~~~~~-~~-~~~~~~~~v~~~~--~~~~~s~D~~l~~~g~~~~~~~~~~~  326 (540)
                      +++...+.++   +..+++++.|++|++|+..... .. ...+|.+.+....  ..+.+++|+..+++++.+... ..+.
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i-~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV-KVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE-EEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE-EEEe
Confidence            3444445444   4669999999999999998765 22 2335654443211  012567888777776543322 2222


Q ss_pred             cCCCc---------CcceeeEEEEEE----EecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc
Q psy1242         327 LGDNF---------SQKLRVRHNCFV----TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH  393 (540)
Q Consensus       327 ~~~~~---------~~~~~v~~~~~~----~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h  393 (540)
                      +....         .......+.+++    ++|+++. +++|+.||.|++||+++++....                ..|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~----------------~~~  208 (357)
T 3i2n_A          146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKLFDLRNMALRWE----------------TNI  208 (357)
T ss_dssp             TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE-EEEEETTSEEEEEETTTTEEEEE----------------EEC
T ss_pred             CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE-EEEEccCCeEEEEECccCceeee----------------cCC
Confidence            21110         111111345555    6789995 79999999999999998887543                468


Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCC
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQL  472 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~D  472 (540)
                      ...|++++|+|.. .++.+|++|+.|+.|++||++.....      .......+.+|...|++++|+|++. ++++|+.|
T Consensus       209 ~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  281 (357)
T 3i2n_A          209 KNGVCSLEFDRKD-ISMNKLVATSLEGKFHVFDMRTQHPT------KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA  281 (357)
T ss_dssp             SSCEEEEEESCSS-SSCCEEEEEESTTEEEEEEEEEEETT------TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCceEEEEcCCCC-CCCCEEEEECCCCeEEEEeCcCCCcc------cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC
Confidence            8999999999810 03689999999999999998763211      0011123458999999999999998 89999999


Q ss_pred             CcEEEEeCC-C-------------------cEEEEecCCCCCCCceEEEEeeCCCEEE-E-ecCCeEEEEecC
Q psy1242         473 GPVLVHTTF-G-------------------DLLRSLDPPSGFASPESVVMSREGVIVV-N-YERGHIAAFTMN  523 (540)
Q Consensus       473 g~v~iw~~~-g-------------------~~~~~l~~~~~~~~v~~l~fspdg~~l~-s-~~dg~I~lw~~~  523 (540)
                      |.|++|+.. +                   +.+..+..|..  .|.+++|+|+|++|+ + +.|+.|++|++.
T Consensus       282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ--PISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS--CEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CcEEEeecCCCcccccccCCCCccccccccceeeccccCCC--CeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            999999652 1                   46778888887  789999999999887 5 568999999986

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.89  E-value=2.2e-21  Score=203.08  Aligned_cols=231  Identities=14%  Similarity=0.137  Sum_probs=167.3

Q ss_pred             eeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC---
Q psy1242         257 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS---  332 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~---  332 (540)
                      .+.+.+++..+++|+.|++|++|+..+++... ..+|...+      .+++.++.++++|+.+..... +.......   
T Consensus       152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v------~~~s~~~~~l~sgs~d~~i~~-~d~~~~~~~~~  224 (420)
T 4gga_A          152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV------GSLSWNSYILSSGSRSGHIHH-HDVRVAEHHVA  224 (420)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------EEEEEETTEEEEEETTSEEEE-EETTSSSCEEE
T ss_pred             EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCce------EEEeeCCCEEEEEeCCCceeE-eeecccceeeE
Confidence            33444455559999999999999998766432 33454322      346667877777754433211 11111100   


Q ss_pred             --cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         333 --QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       333 --~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                        ......+.++.++|+++. +++++.|+.+++|+..+++.....           +.....|.+.|.+++|+|.   ++
T Consensus       225 ~~~~h~~~~~~~~~~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~-----------~~~~~~~~~~V~~~~~~p~---~~  289 (420)
T 4gga_A          225 TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVP-----------LQTFTQHQGAVKAVAWCPW---QS  289 (420)
T ss_dssp             EEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCCSSCSCC-----------SEEECCCSSCEEEEEECTT---CT
T ss_pred             EecccccceeeeeecCCCCe-eeeeeccccceEEeecccccccee-----------eeeecccCCceeeeeeCCC---cc
Confidence              011123677888999995 799999999999999876532110           1122689999999999993   45


Q ss_pred             cEEEEE--eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeC-CCcEE
Q psy1242         411 CFIASG--SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVLVHTT-FGDLL  485 (540)
Q Consensus       411 ~~l~sg--s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~iw~~-~g~~~  485 (540)
                      ..++++  +.|++|++||+.+           +++...+..| ..+.++.|+++++.+++++  .||.|+||+. +++++
T Consensus       290 ~~la~~~gs~D~~I~iwd~~t-----------~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v  357 (420)
T 4gga_A          290 NVLATGGGTSDRHIRIWNVCS-----------GACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV  357 (420)
T ss_dssp             TEEEEEECTTTCEEEEEETTT-----------TEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             cEEEEEeecCCCEEEEEeCCc-----------cccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence            566654  5799999999876           4566666554 5688999999999888765  7999999976 89999


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .++.+|.+  .|.+++|+|+|++|++ +.|++|++|++.
T Consensus       358 ~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          358 AELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            99999998  8999999999999998 568999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=2.4e-21  Score=201.32  Aligned_cols=235  Identities=12%  Similarity=0.098  Sum_probs=167.7

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS-  332 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~-  332 (540)
                      ++.+.+.+++..+++++.|+.|++|+..++..... .+|...+.    .+.+  ++.++++|+.+... ..+.+..... 
T Consensus       137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~----~~~~--~~~~l~~~~~dg~i-~i~d~~~~~~~  209 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG----CLSW--NRHVLSSGSRSGAI-HHHDVRIANHQ  209 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE----EEEE--ETTEEEEEETTSEE-EEEETTSSSCE
T ss_pred             EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE----EEEE--CCCEEEEEcCCCCE-EEEecccCcce
Confidence            34445555666799999999999999987653332 24543332    2334  56566665433222 2222221000 


Q ss_pred             ----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         333 ----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       333 ----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                          ......+.+++|+|+++. |++|+.|+.|++||+.+++.+..+               .+|...|++++|+|    
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~p----  269 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQ-LASGGNDNVVQIWDARSSIPKFTK---------------TNHNAAVKAVAWCP----  269 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTCSSEEEEE---------------CCCSSCCCEEEECT----
T ss_pred             eeEEcCCCCCeeEEEEcCCCCE-EEEEeCCCeEEEccCCCCCccEEe---------------cCCcceEEEEEECC----
Confidence                011223788999999995 799999999999999999888877               78999999999999    


Q ss_pred             CC-cEEEEEe--CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeC-CC
Q psy1242         409 AD-CFIASGS--ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVLVHTT-FG  482 (540)
Q Consensus       409 dg-~~l~sgs--~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~iw~~-~g  482 (540)
                      ++ ..+++|+  .|++|++||+..           ++++..+. |...|.+++|+|++..+++++  .||.|++|+. ++
T Consensus       270 ~~~~ll~~~~gs~d~~i~i~d~~~-----------~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          270 WQSNLLATGGGTMDKQIHFWNAAT-----------GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             TSTTEEEEECCTTTCEEEEEETTT-----------CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             CCCCEEEEecCCCCCEEEEEECCC-----------CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence            55 5666665  799999999876           34566664 667899999999999999954  8999999976 54


Q ss_pred             cEE--EEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEee
Q psy1242         483 DLL--RSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       483 ~~~--~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~  530 (540)
                      +..  ..+.+|..  .|.+++|+|+|++|+++ .||.|++|++. ++.+...
T Consensus       338 ~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          338 GLTKQVDIPAHDT--RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEEEEEEECCSS--CCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             cceeEEEecCCCC--CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            443  34667877  78999999999999985 68999999997 5555443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.89  E-value=5.5e-22  Score=200.68  Aligned_cols=238  Identities=10%  Similarity=0.011  Sum_probs=164.5

Q ss_pred             EEEEccC---cceEEEEcCCCCCccc--CCCCcCCCCCCCCCccccCC---CCeeeccCCCCCCccccccCCC-------
Q psy1242         266 VTVTANH---QFAINRWNPDYAASIQ--SPSYAETPGSPPGNLPLTLD---PILTHPTSNNNAPVPKRHLGDN-------  330 (540)
Q Consensus       266 ~lvs~s~---D~tv~~W~~~~~~~~~--~~~~~~~v~~~~~~~~~s~D---~~l~~~g~~~~~~~~~~~~~~~-------  330 (540)
                      ++++++.   |++|++|+..++....  ...|...+    ..+.|+++   +.++++|+.+... ..+.+...       
T Consensus        33 l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~  107 (357)
T 3i2n_A           33 FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPI----KCGTFGATSLQQRYLATGDFGGNL-HIWNLEAPEMPVYSV  107 (357)
T ss_dssp             EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCE----EEEECTTCCTTTCCEEEEETTSCE-EEECTTSCSSCSEEE
T ss_pred             EEEecCccCCCcEEEEEeCCCCcccceeeecccCcE----EEEEEcCCCCCCceEEEecCCCeE-EEEeCCCCCccEEEE
Confidence            4667766   9999999998765332  22454333    35678887   5666665433222 22222111       


Q ss_pred             cCcceeeEEEEE------EEecCCCEEEEEEecCCcEEEEEccCCe-EEEEEecccceeeeeeEEEeeccCcceEEEE--
Q psy1242         331 FSQKLRVRHNCF------VTTVDSRFLLACGFWDNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS--  401 (540)
Q Consensus       331 ~~~~~~v~~~~~------~~spdg~~llasgs~Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~--  401 (540)
                      ..+...  +.++      +|+|+++. |++|+.|++|++||+.+++ .+..+..|..           .+...|.+++  
T Consensus       108 ~~~~~~--v~~~~~~~~~~~s~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~  173 (357)
T 3i2n_A          108 KGHKEI--INAIDGIGGLGIGEGAPE-IVTGSRDGTVKVWDPRQKDDPVANMEPVQG-----------ENKRDCWTVAFG  173 (357)
T ss_dssp             CCCSSC--EEEEEEESGGGCC-CCCE-EEEEETTSCEEEECTTSCSSCSEEECCCTT-----------SCCCCEEEEEEE
T ss_pred             Eecccc--eEEEeeccccccCCCccE-EEEEeCCCeEEEEeCCCCCCcceeccccCC-----------CCCCceEEEEEE
Confidence            112223  4455      45789995 7999999999999999886 6666632211           1133789998  


Q ss_pred             --eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC---CCCEEEEEeCCCcEE
Q psy1242         402 --RSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA---ELGLVVSGSQLGPVL  476 (540)
Q Consensus       402 --~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp---dg~~lasgs~Dg~v~  476 (540)
                        |+|    ++++|++|+.|+.|++||++..           ++ .....|...|.+++|+|   ++.++++|+.||.|+
T Consensus       174 ~~~~~----~~~~l~~~~~d~~i~i~d~~~~-----------~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          174 NAYNQ----EERVVCAGYDNGDIKLFDLRNM-----------AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             CCCC-----CCCEEEEEETTSEEEEEETTTT-----------EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             eccCC----CCCEEEEEccCCeEEEEECccC-----------ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence              677    9999999999999999998762           23 44467899999999999   999999999999999


Q ss_pred             EEeC-CCcEEE-----EecCCCCCCCceEEEEeeCCC-EEEE-ecCCeEEEEecCC--------------------cEEE
Q psy1242         477 VHTT-FGDLLR-----SLDPPSGFASPESVVMSREGV-IVVN-YERGHIAAFTMNG--------------------NRLR  528 (540)
Q Consensus       477 iw~~-~g~~~~-----~l~~~~~~~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g--------------------~~l~  528 (540)
                      +|+. +++.+.     .+..|..  .|.+++|+|+++ ++++ +.||.|++|+++.                    +.+.
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~  315 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKS--TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ  315 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcC--CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence            9965 333322     3347777  789999999998 6776 5689999999862                    2444


Q ss_pred             eee-cCCcceecC
Q psy1242         529 HES-HNDNLQKTA  540 (540)
Q Consensus       529 ~~~-~~~~V~~va  540 (540)
                      .+. |.+.|++++
T Consensus       316 ~~~~~~~~v~~~~  328 (357)
T 3i2n_A          316 NVTLSTQPISSLD  328 (357)
T ss_dssp             EEECCSSCEEEEE
T ss_pred             ccccCCCCeeEEE
Confidence            444 788887763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=6.5e-21  Score=198.09  Aligned_cols=168  Identities=15%  Similarity=0.175  Sum_probs=147.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|+|+++. |++|+.||.|++||+.+++.+..+               .+|.+.|.+++|++      ..|++|+.
T Consensus       137 v~~v~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~v~~~~~~~------~~l~~~~~  194 (401)
T 4aez_A          137 VASVKWSHDGSF-LSVGLGNGLVDIYDVESQTKLRTM---------------AGHQARVGCLSWNR------HVLSSGSR  194 (401)
T ss_dssp             EEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEEET------TEEEEEET
T ss_pred             EEEEEECCCCCE-EEEECCCCeEEEEECcCCeEEEEe---------------cCCCCceEEEEECC------CEEEEEcC
Confidence            678899999995 799999999999999999988888               78999999999954      69999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      |++|++||++..          ...+..+.+|...|.+++|+|++.+|++|+.||.|++|+. +++.+..+..|..  .|
T Consensus       195 dg~i~i~d~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~v  262 (401)
T 4aez_A          195 SGAIHHHDVRIA----------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA--AV  262 (401)
T ss_dssp             TSEEEEEETTSS----------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS--CC
T ss_pred             CCCEEEEecccC----------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc--eE
Confidence            999999998742          2467888999999999999999999999999999999976 7888889988887  78


Q ss_pred             eEEEEeeCCC-EEEEec---CCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242         498 ESVVMSREGV-IVVNYE---RGHIAAFTMN-GNRLRHESHNDNLQKTA  540 (540)
Q Consensus       498 ~~l~fspdg~-~l~s~~---dg~I~lw~~~-g~~l~~~~~~~~V~~va  540 (540)
                      .+++|+|++. ++++++   |+.|++||+. ++.+..+.+...|.+++
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~  310 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLI  310 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            9999999775 566654   8999999987 88888888888887763

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.88  E-value=3.5e-21  Score=193.44  Aligned_cols=151  Identities=11%  Similarity=0.042  Sum_probs=114.0

Q ss_pred             EEEEec---CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE----
Q psy1242         341 CFVTTV---DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI----  413 (540)
Q Consensus       341 ~~~~sp---dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l----  413 (540)
                      .++|++   +++ +||+|+.|++|+|||+.+|++++++.+|.            .|...|.+++|+|    +|.++    
T Consensus       183 ~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~------------~~v~~v~~vafSp----dG~~lvs~s  245 (356)
T 2w18_A          183 ILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDD------------SYQASVCHKAYSE----MGLLFIVLS  245 (356)
T ss_dssp             EEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC---------------CCCEEEEEEE----TTEEEEEEC
T ss_pred             eEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCC------------cceeeeEEEEECC----CCCEEEEec
Confidence            344455   567 58999999999999999999999983321            1234788889999    88876    


Q ss_pred             --------EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         414 --------ASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-----TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       414 --------~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-----~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                              ++|+.|++|++||..+           ++.+..+     .+|...+.+.+++  +.++|+|+.||+|+||+.
T Consensus       246 ~~~~~w~laSGs~D~tIklWd~~t-----------gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl  312 (356)
T 2w18_A          246 HPCAKESESLRSPVFQLIVINPKT-----------TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL  312 (356)
T ss_dssp             ------------CCEEEEEEETTT-----------TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             cCCCcceeeccCCCcEEEEEECCC-----------CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence                    6788999999999876           3344443     4777766555554  789999999999999987


Q ss_pred             -CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEec
Q psy1242         481 -FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTM  522 (540)
Q Consensus       481 -~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~  522 (540)
                       +|+++.++.+|... .+..++|+|||++|++| .|++|++|++
T Consensus       313 ~tGk~l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          313 LLGQCTALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTCSEEEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             89999999988762 24468999999999985 5899999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.88  E-value=4.4e-21  Score=199.15  Aligned_cols=220  Identities=15%  Similarity=0.071  Sum_probs=160.4

Q ss_pred             ceeeecC-CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc
Q psy1242         256 TYVTLHM-PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK  334 (540)
Q Consensus       256 ~~~~~~~-~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~  334 (540)
                      +...+.+ +...+++++.|++|++|+...+.....                 ..             .....+..+.   
T Consensus        85 ~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----------------~~-------------~~~~~~~~h~---  131 (402)
T 2aq5_A           85 LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----------------LR-------------EPVITLEGHT---  131 (402)
T ss_dssp             EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----------------BC-------------SCSEEEECCS---
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----------------cC-------------CceEEecCCC---
Confidence            3333433 445599999999999999865321100                 00             0001111111   


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                        -.+.+++|+|+++.+|++|+.|++|++||+++++.+..+..             .+|.+.|++++|+|    ++++|+
T Consensus       132 --~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~~----~~~~l~  192 (402)
T 2aq5_A          132 --KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-------------DVHPDTIYSVDWSR----DGALIC  192 (402)
T ss_dssp             --SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-------------TTCCSCEEEEEECT----TSSCEE
T ss_pred             --CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-------------CCCCCceEEEEECC----CCCEEE
Confidence              13788899999854689999999999999999988766610             36889999999999    999999


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCC-EEEEEEcCCCCEEEEE---eCCCcEEEEeC-CCcE-EEE
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQP-VTSVAISAELGLVVSG---SQLGPVLVHTT-FGDL-LRS  487 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~-V~~v~~spdg~~lasg---s~Dg~v~iw~~-~g~~-~~~  487 (540)
                      +|+.|++|++||++.           ++++..+ .+|.+. +.+++|+|++.++++|   +.|+.|++|+. +++. +..
T Consensus       193 ~~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~  261 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRK-----------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL  261 (402)
T ss_dssp             EEETTSEEEEEETTT-----------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred             EEecCCcEEEEeCCC-----------CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceE
Confidence            999999999999876           4566777 788876 8999999999999999   79999999976 3332 222


Q ss_pred             ec-CCCCCCCceEEEEeeCCCEEEE-e-cCCeEEEEecC-CcE-EEee---ecCCcceecC
Q psy1242         488 LD-PPSGFASPESVVMSREGVIVVN-Y-ERGHIAAFTMN-GNR-LRHE---SHNDNLQKTA  540 (540)
Q Consensus       488 l~-~~~~~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~-g~~-l~~~---~~~~~V~~va  540 (540)
                      .. .+..  .+.+++|+|+|++|++ + .||.|++|+++ ++. +..+   .+.+.|.+++
T Consensus       262 ~~~~~~~--~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~  320 (402)
T 2aq5_A          262 QELDTSS--GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG  320 (402)
T ss_dssp             EECCCCS--SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEE
T ss_pred             EeccCCC--ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceE
Confidence            22 3344  6899999999999864 5 48999999998 441 3333   3557777653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.88  E-value=5.1e-21  Score=208.39  Aligned_cols=249  Identities=10%  Similarity=0.031  Sum_probs=185.9

Q ss_pred             ceeeecC--CcEEEEEccCcceEEEEcCCCC--------Ccc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCC---C
Q psy1242         256 TYVTLHM--PSVVTVTANHQFAINRWNPDYA--------ASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA---P  321 (540)
Q Consensus       256 ~~~~~~~--~~~~lvs~s~D~tv~~W~~~~~--------~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~---~  321 (540)
                      +...+.+  ++..+++++.|++|++|+..++        ... ....|..    ....+.|++|+..+++++....   .
T Consensus        68 ~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~~~  143 (615)
T 1pgu_A           68 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG----PISDISWDFEGRRLCVVGEGRDNFGV  143 (615)
T ss_dssp             EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS----CEEEEEECTTSSEEEEEECCSSCSEE
T ss_pred             EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc----cEEEEEEeCCCCEEEEeccCCCCccE
Confidence            3344444  5556999999999999998643        111 1223432    2346789999987776643311   1


Q ss_pred             ccccccCCCcC--cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc---c
Q psy1242         322 VPKRHLGDNFS--QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG---V  396 (540)
Q Consensus       322 ~~~~~~~~~~~--~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~---~  396 (540)
                      ...+.......  ....-.+.+++|+|+++.++++|+.|+.|++||+.+++.+..+               .+|.+   .
T Consensus       144 v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~---------------~~~~~~~~~  208 (615)
T 1pgu_A          144 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD---------------RTHHKQGSF  208 (615)
T ss_dssp             EEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE---------------CSSSCTTCC
T ss_pred             EEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee---------------cccCCCCce
Confidence            11111111000  0112237889999999866899999999999999999988888               78888   9


Q ss_pred             eEEEEeccCccCC-CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-c---cCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         397 VTCLSRSECNITA-DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-T---GHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       397 Vt~l~~sp~~~~d-g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~---~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      |++++|+|    + +++|++|+.|+.|++||+..           ++++..+ .   +|...|.+++|+ ++.+|++++.
T Consensus       209 v~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~  272 (615)
T 1pgu_A          209 VRDVEFSP----DSGEFVITVGSDRKISCFDGKS-----------GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA  272 (615)
T ss_dssp             EEEEEECS----TTCCEEEEEETTCCEEEEETTT-----------CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET
T ss_pred             EEEEEECC----CCCCEEEEEeCCCeEEEEECCC-----------CCEeEEecccccccCCceEEEEEc-CCCEEEEEcC
Confidence            99999999    8 99999999999999999876           4567777 5   899999999999 9999999999


Q ss_pred             CCcEEEEeC-CCcEEEEecCCCCC--CCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         472 LGPVLVHTT-FGDLLRSLDPPSGF--ASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       472 Dg~v~iw~~-~g~~~~~l~~~~~~--~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      ||.|++|+. +++.+..+..+...  ..+.++.|+ ++.++++ +.++.|++|++. ++.+..+. |.+.|++++
T Consensus       273 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~  346 (615)
T 1pgu_A          273 DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT  346 (615)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence            999999976 68888888876321  156778886 7777776 568999999998 67776665 888888763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=9.9e-23  Score=211.82  Aligned_cols=254  Identities=8%  Similarity=-0.055  Sum_probs=160.7

Q ss_pred             eeecCCcEEEEEccCcceEEEEcCCCCCc------ccCCCCcCCCCCCCCCccccC--------CCCeeeccCCCCCCcc
Q psy1242         258 VTLHMPSVVTVTANHQFAINRWNPDYAAS------IQSPSYAETPGSPPGNLPLTL--------DPILTHPTSNNNAPVP  323 (540)
Q Consensus       258 ~~~~~~~~~lvs~s~D~tv~~W~~~~~~~------~~~~~~~~~v~~~~~~~~~s~--------D~~l~~~g~~~~~~~~  323 (540)
                      ...+.....+++++.|++|++|+...+..      ....+|.+.|.    .+.|++        |+.++++++.+.. ..
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~----~v~~~p~~~~~~~~d~~~las~s~D~t-v~  169 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN----DIDIADVYSADNRLAEQVIASVGDDCT-LI  169 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE----EEEEEEEECTTCSEEEEEEEEEETTSE-EE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceE----EEEEccccccccCCCCCEEEEEECCCe-EE
Confidence            34556677899999999999999876542      23456776654    455654        7878887765443 33


Q ss_pred             ccccCC------CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee----------eeE
Q psy1242         324 KRHLGD------NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS----------RIV  387 (540)
Q Consensus       324 ~~~~~~------~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~----------~~~  387 (540)
                      .+.+..      .+.+.  -.+.+++|+|++..+|++|+.|++|++||+.+++.......+......          ...
T Consensus       170 ~Wd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~  247 (393)
T 4gq1_A          170 IWRLTDEGPILAGYPLS--SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT  247 (393)
T ss_dssp             EEEEETTEEEEEEEECS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred             EEECCCCceeeeecCCC--CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence            343321      11111  236788999998777899999999999999988766554332221111          112


Q ss_pred             EEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccccc-CC-------CCCCcceEEeccCCCCEEEEEE
Q psy1242         388 QIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIV-GE-------TDTPTPRATLTGHEQPVTSVAI  459 (540)
Q Consensus       388 ~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~-~~-------~~~~~~~~~l~~h~~~V~~v~~  459 (540)
                      ....+|.+.|.+++|++.   +|+.|++++.|+++++||+........ ..       ............+...+. +.+
T Consensus       248 ~~~~~~~~~v~~v~~~~~---dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  323 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGS---DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACP  323 (393)
T ss_dssp             ----CCSSSCSEEEEETT---TTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC-CEE
T ss_pred             eecccccccceeeeeecC---CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEE
Confidence            234689999999999732   899999999999999999875331100 00       000001122222222222 233


Q ss_pred             cC--CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCC
Q psy1242         460 SA--ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  524 (540)
Q Consensus       460 sp--dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g  524 (540)
                      ++  ++.++++|+.||+|++|+. +++.+..+..|..  +|.+++|+|||++||+++++.+.+|.+.|
T Consensus       324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~Gv~lvrL~g  389 (393)
T 4gq1_A          324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGSVLLTRLMG  389 (393)
T ss_dssp             CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred             ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence            33  3346788899999999976 6777777777777  79999999999999999888899988754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=1.1e-21  Score=199.96  Aligned_cols=229  Identities=17%  Similarity=0.071  Sum_probs=168.6

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC---
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD---  329 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~---  329 (540)
                      +...+.+++..+++++.|++|++|+.......   ....|...    ...+.+++|+..+++++.+... ..+.+..   
T Consensus        56 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~v-~i~d~~~~~~  130 (372)
T 1k8k_C           56 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA----ARCVRWAPNEKKFAVGSGSRVI-SICYFEQEND  130 (372)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC----EEEEEECTTSSEEEEEETTSSE-EEEEEETTTT
T ss_pred             cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc----eeEEEECCCCCEEEEEeCCCEE-EEEEecCCCc
Confidence            33444455556999999999999998665421   12334322    3357788999877776544333 1111111   


Q ss_pred             -----CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEcc------------------CCeEEEEEecccceeeeee
Q psy1242         330 -----NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTD------------------NARIVQIIFGHYGVVTSRI  386 (540)
Q Consensus       330 -----~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~------------------~g~~~~~l~~~~~~v~~~~  386 (540)
                           .........+.+++|+|+++. |++|+.||.|++||++                  +++.+..+           
T Consensus       131 ~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  198 (372)
T 1k8k_C          131 WWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-----------  198 (372)
T ss_dssp             EEEEEEECTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-----------
T ss_pred             ceeeeeeecccCCCeeEEEEcCCCCE-EEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-----------
Confidence                 111112234788999999995 7999999999999954                  45666665           


Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV  466 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l  466 (540)
                          .+|.+.|++++|+|    ++++|++++.|++|++||++.           ++++..+.+|...|.+++|+|++.++
T Consensus       199 ----~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l  259 (372)
T 1k8k_C          199 ----SSSCGWVHGVCFSA----NGSRVAWVSHDSTVCLADADK-----------KMAVATLASETLPLLAVTFITESSLV  259 (372)
T ss_dssp             ----CCCSSCEEEEEECS----SSSEEEEEETTTEEEEEEGGG-----------TTEEEEEECSSCCEEEEEEEETTEEE
T ss_pred             ----CCCCCeEEEEEECC----CCCEEEEEeCCCEEEEEECCC-----------CceeEEEccCCCCeEEEEEecCCCEE
Confidence                78999999999999    999999999999999999876           45788899999999999999999988


Q ss_pred             EEEeCCCcEEEEeC-C--CcE--E------------------------------------EEe-cCCCCCCCceEEEEe-
Q psy1242         467 VSGSQLGPVLVHTT-F--GDL--L------------------------------------RSL-DPPSGFASPESVVMS-  503 (540)
Q Consensus       467 asgs~Dg~v~iw~~-~--g~~--~------------------------------------~~l-~~~~~~~~v~~l~fs-  503 (540)
                      ++| .||.|++|+. +  ++.  +                                    ..+ .+|..  +|.+++|. 
T Consensus       260 ~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~  336 (372)
T 1k8k_C          260 AAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN--SVSQISVLS  336 (372)
T ss_dssp             EEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS--CEEEEEEEE
T ss_pred             EEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC--CcceeEEec
Confidence            887 8999999965 3  321  0                                    222 36666  78999976 


Q ss_pred             eCC---CEEEE-ecCCeEEEEecC
Q psy1242         504 REG---VIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       504 pdg---~~l~s-~~dg~I~lw~~~  523 (540)
                      ++|   .+|++ +.||.|++|+++
T Consensus       337 ~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          337 GGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             STTTSCSEEEEEETTSEEEEEEHH
T ss_pred             CCCcceeeEEEecCCCceEEEEec
Confidence            566   88888 569999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.88  E-value=1.1e-21  Score=199.05  Aligned_cols=252  Identities=15%  Similarity=0.078  Sum_probs=171.3

Q ss_pred             EEEEccCcceEEEEcCCCCCcccC-CCCcCCC-CCCCCCccccCC----CCeeeccCCCCCCccccccCCCc-C---cce
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQS-PSYAETP-GSPPGNLPLTLD----PILTHPTSNNNAPVPKRHLGDNF-S---QKL  335 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v-~~~~~~~~~s~D----~~l~~~g~~~~~~~~~~~~~~~~-~---~~~  335 (540)
                      +++++ .++.|++|+..++..... ..|.... ......+.|+++    +.++++|+.+... ..+.+.... .   ...
T Consensus        37 ~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i-~v~d~~~~~~~~~~~~~  114 (366)
T 3k26_A           37 VFATV-GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII-RIINPITMQCIKHYVGH  114 (366)
T ss_dssp             EEEEE-ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE-EEECTTTCCEEEEEESC
T ss_pred             EEEEC-CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE-EEEEchhceEeeeecCC
Confidence            34444 455999999886543322 2232111 122335678887    4566665433222 222221100 0   011


Q ss_pred             eeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         336 RVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       336 ~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      .-.+.+++|+| +++ +|++|+.||+|++||+++++.+..+..            +.+|...|++++|+|    ++++|+
T Consensus       115 ~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~~~~~v~~~~~~~----~~~~l~  177 (366)
T 3k26_A          115 GNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGG------------VEGHRDEVLSADYDL----LGEKIM  177 (366)
T ss_dssp             CSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECS------------TTSCSSCEEEEEECT----TSSEEE
T ss_pred             CCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEecc------------cccccCceeEEEECC----CCCEEE
Confidence            22378889999 788 579999999999999999988776611            136899999999999    999999


Q ss_pred             EEeCCCcEEEEEcCCCcccccC----------C-------CCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242         415 SGSADCTVLLWHWNARTQSIVG----------E-------TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV  477 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~----------~-------~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i  477 (540)
                      +|+.|++|++||++........          .       ...........+|...|.+++|+  ++++++++.||.|++
T Consensus       178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~  255 (366)
T 3k26_A          178 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVC  255 (366)
T ss_dssp             EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEE
T ss_pred             EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEE
Confidence            9999999999998753211000          0       00011234455699999999998  779999999999999


Q ss_pred             EeC-CC--------------cEEEEecCCCCCCCceEEEEeeC--CCEEEEe-cCCeEEEEecC-Cc----EEEeee-c-
Q psy1242         478 HTT-FG--------------DLLRSLDPPSGFASPESVVMSRE--GVIVVNY-ERGHIAAFTMN-GN----RLRHES-H-  532 (540)
Q Consensus       478 w~~-~g--------------~~~~~l~~~~~~~~v~~l~fspd--g~~l~s~-~dg~I~lw~~~-g~----~l~~~~-~-  532 (540)
                      |+. ++              ..+..+..|..  .|.+++|+|+  |++|+++ .||.|++|+++ ++    .+..+. | 
T Consensus       256 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  333 (366)
T 3k26_A          256 WKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK  333 (366)
T ss_dssp             EEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred             EeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence            965 33              34778888887  7899999999  9999985 57999999998 33    333443 4 


Q ss_pred             -CCcceecC
Q psy1242         533 -NDNLQKTA  540 (540)
Q Consensus       533 -~~~V~~va  540 (540)
                       ...|++++
T Consensus       334 ~~~~v~~~~  342 (366)
T 3k26_A          334 CGAAIRQTS  342 (366)
T ss_dssp             CCSCEEEEE
T ss_pred             cCCceEEEE
Confidence             67787763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.88  E-value=2.4e-22  Score=203.85  Aligned_cols=248  Identities=16%  Similarity=0.126  Sum_probs=174.0

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCC-----CcC--cc
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGD-----NFS--QK  334 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~-----~~~--~~  334 (540)
                      +..+++++.|++|++|+..+....... +|.+.+    ..+.|++ ++.++++++.+... ..+.+..     .+.  ..
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i----~~~~~~~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~  159 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI----NELKFHPRDPNLLLSVSKDHAL-RLWNIQTDTLVAIFGGVEG  159 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCE----EEEEECSSCTTEEEEEETTSCE-EEEETTTTEEEEEECSTTS
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcE----EEEEECCCCCCEEEEEeCCCeE-EEEEeecCeEEEEeccccc
Confidence            567999999999999999876644333 355333    3577888 88877776544332 2222211     010  11


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEeccc-------------ceeeeeeEEEeeccCcceEEEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHY-------------GVVTSRIVQIIFGHYGVVTCLS  401 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~-------------~~v~~~~~~~l~~h~~~Vt~l~  401 (540)
                      ....+.+++|+|+++. |++|+.||.|++||+++++....+..+.             ............+|.+.|++++
T Consensus       160 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          160 HRDEVLSADYDLLGEK-IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred             ccCceeEEEECCCCCE-EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence            2234788899999995 7899999999999999876543331100             0000012233456999999999


Q ss_pred             eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccC---CCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEE
Q psy1242         402 RSECNITADCFIASGSADCTVLLWHWNARTQSIVG---ETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVL  476 (540)
Q Consensus       402 ~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~---~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~  476 (540)
                      |+.      ++|++++.|+.|++||+.........   .......+..+.+|...|++++|+|+  +++|++|+.||.|+
T Consensus       239 ~~~------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  312 (366)
T 3k26_A          239 WLG------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY  312 (366)
T ss_dssp             EET------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred             EcC------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence            974      59999999999999998764321100   01112457788899999999999999  99999999999999


Q ss_pred             EEeC-CCc----EEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         477 VHTT-FGD----LLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       477 iw~~-~g~----~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      +|+. +++    ....+..|.....|.+++|+|+|++|++ +.||.|++|+++
T Consensus       313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9976 443    5567887732227999999999999998 568999999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.88  E-value=3.6e-21  Score=191.68  Aligned_cols=230  Identities=13%  Similarity=0.121  Sum_probs=162.1

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----c
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----Q  333 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~  333 (540)
                      .+.+++..++|++.|++|++|+..+++.... .+|...      ...++.++.++++++................    .
T Consensus        74 ~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~------~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~  147 (318)
T 4ggc_A           74 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR------VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS  147 (318)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce------EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence            3334444599999999999999987664332 234422      2356667777776643322211111100000    0


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ...-.+.+++++++++. +++|+.|++|++||+.+++.....           ......|.+.|.+++++|.   ++..+
T Consensus       148 ~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~---~~~~~  212 (318)
T 4ggc_A          148 GHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVP-----------LQTFTQHQGAVKAVAWCPW---QSNVL  212 (318)
T ss_dssp             CCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCBTTBSCC-----------SEEECCCCSCEEEEEECTT---STTEE
T ss_pred             CccCceEEEEEcCCCCE-EEEEecCcceeEEECCCCcccccc-----------eeeecccCCceEEEEecCC---CCcEE
Confidence            11123677888999995 799999999999999877532111           1112578889999999982   33333


Q ss_pred             --EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEeC-CCcEEEEe
Q psy1242         414 --ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       414 --~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~iw~~-~g~~~~~l  488 (540)
                        ++++.+++|++||....           . ......+...+.++++++++..+++++  .||.|++|+. +++++.++
T Consensus       213 ~~~~~~~~~~i~lwd~~~~-----------~-~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l  280 (318)
T 4ggc_A          213 ATGGGTSDRHIRIWNVCSG-----------A-CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL  280 (318)
T ss_dssp             EEEECTTTCEEEEEETTTC-----------C-EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             EEEecCCCCEEEEEecccc-----------c-ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence              46678999999998752           2 233456778899999999999887665  7999999976 89999999


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         489 DPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .+|.+  .|.+++|+|+|++|++ +.||+|++|++.
T Consensus       281 ~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          281 KGHTS--RVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             CCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             cCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            99998  8999999999999998 568999999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=4.2e-21  Score=202.76  Aligned_cols=174  Identities=14%  Similarity=0.091  Sum_probs=134.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC---CcEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA---DCFIAS  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d---g~~l~s  415 (540)
                      +.+++|+|++++ |++|+.||.+++|++.+++....           ....+.+|.+.|++++|+|    +   +++|++
T Consensus       152 v~~~~~sp~~~~-l~~~~~~g~v~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~sp----~~~~~~~l~s  215 (450)
T 2vdu_B          152 PNAISIAEDDTT-VIIADKFGDVYSIDINSIPEEKF-----------TQEPILGHVSMLTDVHLIK----DSDGHQFIIT  215 (450)
T ss_dssp             EEEEEECTTSSE-EEEEETTSEEEEEETTSCCCSSC-----------CCCCSEECSSCEEEEEEEE----CTTSCEEEEE
T ss_pred             ceEEEEcCCCCE-EEEEeCCCcEEEEecCCcccccc-----------cceeeecccCceEEEEEcC----CCCCCcEEEE
Confidence            567777777774 56777777777777766554320           1112378999999999999    9   999999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEE-eccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC--
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRAT-LTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP--  491 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~--  491 (540)
                      |+.|++|++||+..           ++++.. +.+|...|.+++|+ ++++|++|+.|++|++|+. +++++..+..+  
T Consensus       216 ~~~d~~i~vwd~~~-----------~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  283 (450)
T 2vdu_B          216 SDRDEHIKISHYPQ-----------CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL  283 (450)
T ss_dssp             EETTSCEEEEEESC-----------TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHH
T ss_pred             EcCCCcEEEEECCC-----------CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh
Confidence            99999999999876           345555 66999999999999 9999999999999999976 78888877632  


Q ss_pred             ---------------------CCCCCceEEEEeeCCCEEEEe--cCCeEEEEec--C-C---cEEEeeecCCcceecC
Q psy1242         492 ---------------------SGFASPESVVMSREGVIVVNY--ERGHIAAFTM--N-G---NRLRHESHNDNLQKTA  540 (540)
Q Consensus       492 ---------------------~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~--~-g---~~l~~~~~~~~V~~va  540 (540)
                                           .....|.+++|+|++++|+++  .++.|++|++  . +   +.+..+...+.|.+++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~  361 (450)
T 2vdu_B          284 IKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLS  361 (450)
T ss_dssp             HGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEE
T ss_pred             hhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEE
Confidence                                 111268899999999999885  5899999999  3 4   4455555446776653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=1.6e-20  Score=190.27  Aligned_cols=181  Identities=13%  Similarity=0.121  Sum_probs=133.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe--ccCccCCCcEEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR--SECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~--sp~~~~dg~~l~sg  416 (540)
                      +.+++|+|++++ |++|+.||+|++||+.+++.+..                .+|.+.|++++|  +|    ++.+|++|
T Consensus        89 v~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~----------------~~~~~~v~~~~~~~~~----~~~~l~~~  147 (368)
T 3mmy_A           89 VLDVCWSDDGSK-VFTASCDKTAKMWDLSSNQAIQI----------------AQHDAPVKTIHWIKAP----NYSCVMTG  147 (368)
T ss_dssp             EEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEE----------------EECSSCEEEEEEEECS----SCEEEEEE
T ss_pred             EEEEEECcCCCE-EEEEcCCCcEEEEEcCCCCceee----------------ccccCceEEEEEEeCC----CCCEEEEc
Confidence            678889999995 78999999999999998887653                479999999999  88    89999999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCC-----------------------------CCcceEEe-ccCCCCEEEEEEcCCCCE-
Q psy1242         417 SADCTVLLWHWNARTQSIVGETD-----------------------------TPTPRATL-TGHEQPVTSVAISAELGL-  465 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~-----------------------------~~~~~~~l-~~h~~~V~~v~~spdg~~-  465 (540)
                      +.|++|++||++...........                             .......+ ..+...+.++++.++... 
T Consensus       148 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (368)
T 3mmy_A          148 SWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK  227 (368)
T ss_dssp             ETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSC
T ss_pred             cCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCC
Confidence            99999999998764311100000                             00000001 112344566666665544 


Q ss_pred             ---EEEEeCCCcEEEEeCC-C---cEEEEecCCCCCC----------CceEEEEeeCCCEEEEe-cCCeEEEEecC-CcE
Q psy1242         466 ---VVSGSQLGPVLVHTTF-G---DLLRSLDPPSGFA----------SPESVVMSREGVIVVNY-ERGHIAAFTMN-GNR  526 (540)
Q Consensus       466 ---lasgs~Dg~v~iw~~~-g---~~~~~l~~~~~~~----------~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~  526 (540)
                         +++++.||.|++|+.. +   ..+..+..|....          +|.+++|+|+|++|+++ .||.|++||++ ++.
T Consensus       228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK  307 (368)
T ss_dssp             EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence               9999999999999763 3   4556666665310          48999999999999885 68999999998 777


Q ss_pred             EEeee-cCCcceecC
Q psy1242         527 LRHES-HNDNLQKTA  540 (540)
Q Consensus       527 l~~~~-~~~~V~~va  540 (540)
                      +..+. |.+.|++++
T Consensus       308 ~~~~~~~~~~v~~~~  322 (368)
T 3mmy_A          308 LKTSEQLDQPISACC  322 (368)
T ss_dssp             EEECCCCSSCEEEEE
T ss_pred             EEEecCCCCCceEEE
Confidence            77775 788888764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=8.6e-21  Score=213.83  Aligned_cols=204  Identities=13%  Similarity=0.072  Sum_probs=160.2

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT  312 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~  312 (540)
                      .|.+.+..+.|++++..                 +++++.|++|++|+......                          
T Consensus         7 gH~~~V~~l~~s~dg~~-----------------latg~~dg~I~vwd~~~~~~--------------------------   43 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKR-----------------LATCSSDKTIKIFEVEGETH--------------------------   43 (753)
T ss_dssp             -CCCCEEEECCCSSSCC-----------------EEEEETTTEEEEEEEETTEE--------------------------
T ss_pred             cCcceeEEEEECCCCCe-----------------EEEEECCCcEEEEecCCCCC--------------------------
Confidence            44556666666666554                 99999999999999642110                          


Q ss_pred             eccCCCCCCccccccCCCcCcceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCe--EEEEEecccceeeeeeEE
Q psy1242         313 HPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNAR--IVQIIFGHYGVVTSRIVQ  388 (540)
Q Consensus       313 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~--~~~~l~~~~~~v~~~~~~  388 (540)
                               .....+.++.     -.+.+++|+++  ++. |++|+.||+|++||+.+++  .+..+             
T Consensus        44 ---------~~~~~l~~h~-----~~V~~l~~s~~~~~~~-l~s~s~Dg~I~vwd~~~~~~~~~~~~-------------   95 (753)
T 3jro_A           44 ---------KLIDTLTGHE-----GPVWRVDWAHPKFGTI-LASCSYDGKVLIWKEENGRWSQIAVH-------------   95 (753)
T ss_dssp             ---------EEEEEECCCS-----SCEEEEEECCTTSCSE-EEEEETTSCEEEEEEETTEEEEEEEE-------------
T ss_pred             ---------ccceeccCCc-----CceEEEEecCCCCCCE-EEEEeCCCeEEEEECCCCcccccccc-------------
Confidence                     0111111111     12678888888  884 7999999999999999886  44444             


Q ss_pred             EeeccCcceEEEEeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-----
Q psy1242         389 IIFGHYGVVTCLSRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-----  461 (540)
Q Consensus       389 ~l~~h~~~Vt~l~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-----  461 (540)
                        .+|.+.|++++|+|    +  +..+++|+.||+|++||++...         ......+.+|...|.+++|+|     
T Consensus        96 --~~h~~~V~~v~~sp----~~~~~~l~sgs~dg~I~vwdl~~~~---------~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           96 --AVHSASVNSVQWAP----HEYGPLLLVASSDGKVSVVEFKENG---------TTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             --CCCSSCEEEEEECC----GGGCSEEEEEETTSEEEEEECCSSS---------CCCCEEEECCSSCEEEEEECCCC---
T ss_pred             --cCCCCCeEEEEECC----CCCCCEEEEEeCCCcEEEEEeecCC---------CcceeEeecCCCceEEEEecCccccc
Confidence              78999999999999    7  9999999999999999987643         234567789999999999999     


Q ss_pred             --------CCCEEEEEeCCCcEEEEeC-CC----cEEEEecCCCCCCCceEEEEeeC---CCEEEE-ecCCeEEEEecCC
Q psy1242         462 --------ELGLVVSGSQLGPVLVHTT-FG----DLLRSLDPPSGFASPESVVMSRE---GVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       462 --------dg~~lasgs~Dg~v~iw~~-~g----~~~~~l~~~~~~~~v~~l~fspd---g~~l~s-~~dg~I~lw~~~g  524 (540)
                              ++.++++|+.||+|++|+. ++    .++..+.+|..  +|.+++|+|+   |.++++ +.||.|++|++..
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD--WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS--CEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC--cEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                    5899999999999999965 33    56678888888  8999999999   898888 4689999999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=6.8e-21  Score=218.57  Aligned_cols=165  Identities=10%  Similarity=0.109  Sum_probs=132.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|+| |+ +|++++.|++|++||+++++++..+               . |.+.|++++|+|    ++++|++|+.
T Consensus        61 V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~---------------~-~~~~V~~v~~sp----~g~~l~sgs~  118 (902)
T 2oaj_A           61 IKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTV---------------F-VPGKITSIDTDA----SLDWMLIGLQ  118 (902)
T ss_dssp             EEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEE---------------E-CSSCEEEEECCT----TCSEEEEEET
T ss_pred             EEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEE---------------c-CCCCEEEEEECC----CCCEEEEEcC
Confidence            77888999 88 5799999999999999999988777               3 668899999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC-CCcEEEEecCC----
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT-FGDLLRSLDPP----  491 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~----  491 (540)
                      ||+|++||++.......... ..... ..+.+|...|++++|+|+ +..+++|+.||+| +|+. +++.++.+..+    
T Consensus       119 dg~V~lwd~~~~~~~~~~i~-~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g  196 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLSSFKLD-NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF  196 (902)
T ss_dssp             TSCEEEEETTTTEEEEEEEC-CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT
T ss_pred             CCcEEEEECCCCccccceec-cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCc
Confidence            99999999876321000000 00000 234689999999999996 5789999999999 9976 77788888765    


Q ss_pred             --------------CCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEe
Q psy1242         492 --------------SGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       492 --------------~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~  529 (540)
                                    ..  .|.+++|+|+|++|++ +.||.|++||++ |+.+..
T Consensus       197 ~~~~~~~~~~~~~h~~--~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          197 APGGDFSEKTNEKRTP--KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             CCCSTTCCCTTSCBCC--CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             CCCcccccccccccCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence                          23  6899999999999998 568999999996 777653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.87  E-value=1.7e-21  Score=196.19  Aligned_cols=174  Identities=18%  Similarity=0.132  Sum_probs=139.0

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+.+++|+|+|++ ||+|+.|++|+|||+.+++.  +..+               .+|.+.|++++|++.  .++++|+|
T Consensus        15 ~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~~~l---------------~gH~~~V~~v~~~~~--~~~~~l~s   76 (316)
T 3bg1_A           15 MIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILIADL---------------RGHEGPVWQVAWAHP--MYGNILAS   76 (316)
T ss_dssp             CEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEEEEE---------------ECCSSCEEEEEECCG--GGSSCEEE
T ss_pred             eEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEEEEE---------------cCCCccEEEEEeCCC--CCCCEEEE
Confidence            3788999999995 79999999999999987753  3445               899999999999751  03789999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCc--E--EEEec
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVLVHTTFGD--L--LRSLD  489 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~iw~~~g~--~--~~~l~  489 (540)
                      |+.|++|++||++...         ..+...+.+|...|.+++|+|+  +.+|++|+.||+|++|+....  .  ...+.
T Consensus        77 ~s~D~~v~iWd~~~~~---------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~  147 (316)
T 3bg1_A           77 CSYDRKVIIWREENGT---------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN  147 (316)
T ss_dssp             EETTSCEEEECCSSSC---------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT
T ss_pred             EECCCEEEEEECCCCc---------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec
Confidence            9999999999987532         2356778899999999999998  789999999999999976432  2  34455


Q ss_pred             CCCCCCCceEEEEeeC-----------------CCEEEE-ecCCeEEEEecCC----cEEEeee-cCCcceecC
Q psy1242         490 PPSGFASPESVVMSRE-----------------GVIVVN-YERGHIAAFTMNG----NRLRHES-HNDNLQKTA  540 (540)
Q Consensus       490 ~~~~~~~v~~l~fspd-----------------g~~l~s-~~dg~I~lw~~~g----~~l~~~~-~~~~V~~va  540 (540)
                      .|..  .|.+++|+|+                 +++|++ +.|+.|++|++++    +.+..+. |.+.|++++
T Consensus       148 ~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~  219 (316)
T 3bg1_A          148 AHTI--GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA  219 (316)
T ss_dssp             SSSS--CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred             cccC--CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence            6766  7899999997                 467777 5689999999873    2455554 888888764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=1.1e-21  Score=232.38  Aligned_cols=245  Identities=20%  Similarity=0.200  Sum_probs=190.5

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC---
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN---  330 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~---  330 (540)
                      .+...+.+++..+++++.|+.|++|+...+.... ..+|.+.|    ..+.|++|+..+++++.+... ..+.+...   
T Consensus       964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v----~~l~~s~dg~~l~s~~~dg~i-~vwd~~~~~~~ 1038 (1249)
T 3sfz_A          964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV----RHIQFTADGKTLISSSEDSVI-QVWNWQTGDYV 1038 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC----CCEEECSSSSCEEEECSSSBE-EEEETTTTEEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce----EEEEECCCCCEEEEEcCCCEE-EEEECCCCceE
Confidence            4455667777789999999999999998765433 33565444    357899999877776544332 22222110   


Q ss_pred             cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       331 ~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                      ......-.+.++++++++.  +++++.|++|++||+.+++....+               .+|.+.|++++|+|    ++
T Consensus      1039 ~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~vwd~~~~~~~~~~---------------~~~~~~v~~~~~s~----d~ 1097 (1249)
T 3sfz_A         1039 FLQAHQETVKDFRLLQDSR--LLSWSFDGTVKVWNVITGRIERDF---------------TCHQGTVLSCAISS----DA 1097 (1249)
T ss_dssp             CCBCCSSCEEEEEECSSSE--EEEEESSSEEEEEETTTTCCCEEE---------------ECCSSCCCCEEECS----SS
T ss_pred             EEecCCCcEEEEEEcCCCc--EEEEECCCcEEEEECCCCceeEEE---------------cccCCcEEEEEECC----CC
Confidence            0111222367888899875  578889999999999999988888               78999999999999    99


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe-
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL-  488 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l-  488 (540)
                      ++|++|+.|++|++||+..           ++++..+.+|...|++++|+|++++|++|+.||.|++|+. +++.+..+ 
T Consensus      1098 ~~l~s~s~d~~v~iwd~~~-----------~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~ 1166 (1249)
T 3sfz_A         1098 TKFSSTSADKTAKIWSFDL-----------LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1166 (1249)
T ss_dssp             SSCEEECCSSCCCEECSSS-----------SSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC
T ss_pred             CEEEEEcCCCcEEEEECCC-----------cceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec
Confidence            9999999999999999876           4567788899999999999999999999999999999976 67666554 


Q ss_pred             --------cCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         489 --------DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       489 --------~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                              ..|.+  .|.+++|+|+|++|++++ |.|++|++. |+.+..+. |.+.|.++
T Consensus      1167 ~~~~~~~~~~~~~--~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~i~~~ 1224 (1249)
T 3sfz_A         1167 PISVEEGTATHGG--WVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKKI 1224 (1249)
T ss_dssp             CCC-------CCS--CCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCSSCCCCCC
T ss_pred             cccccccccccCc--eEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeeeccCCcccEE
Confidence                    45666  789999999999999885 999999987 77776665 66667655

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=1.9e-20  Score=221.64  Aligned_cols=247  Identities=17%  Similarity=0.131  Sum_probs=185.4

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |...++.+.+.+++..+++++.|++|++|+..++.... ..+|.+.|    ..+.|++|+.++++++.+.. ...+.+..
T Consensus       614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~l~s~~~d~~-v~vwd~~~  688 (1249)
T 3sfz_A          614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEV----LCCAFSSDDSYIATCSADKK-VKIWDSAT  688 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE----EEEEECTTSSEEEEEETTSE-EEEEETTT
T ss_pred             ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCE----EEEEEecCCCEEEEEeCCCe-EEEEECCC
Confidence            44455566677777779999999999999998766433 33465443    35789999988887754332 22232221


Q ss_pred             Cc-C---cceeeEEEEEEEecCC-CEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         330 NF-S---QKLRVRHNCFVTTVDS-RFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       330 ~~-~---~~~~v~~~~~~~spdg-~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      .. .   ....-.+.+++|+|++ ..++++|+.|++|++||+.+++.+..+               .+|.+.|++++|+|
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---------------~~h~~~v~~~~~sp  753 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM---------------FGHTNSVNHCRFSP  753 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE---------------CCCSSCEEEEEECS
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee---------------cCCCCCEEEEEEec
Confidence            10 0   0112237788889953 236899999999999999999988888               88999999999999


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCcccccC-------------------------------------------CCCCC
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIVG-------------------------------------------ETDTP  441 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~-------------------------------------------~~~~~  441 (540)
                          ++++|++|+.||+|++||+.........                                           ....+
T Consensus       754 ----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~  829 (1249)
T 3sfz_A          754 ----DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS  829 (1249)
T ss_dssp             ----STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred             ----CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence                9999999999999999998654211000                                           00011


Q ss_pred             cceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEE
Q psy1242         442 TPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIA  518 (540)
Q Consensus       442 ~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~  518 (540)
                      ..+..+ .+|...|.+++|+|++.++++++.||.|++|+. ++..+..+.+|..  .|.+++|+|+|+.+++ +.||.|+
T Consensus       830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~s~dg~v~  907 (1249)
T 3sfz_A          830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTASDDQTIR  907 (1249)
T ss_dssp             CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEEeCCCeEE
Confidence            122222 378999999999999999999999999999976 7888999999988  7899999999999888 5689999


Q ss_pred             EEecC
Q psy1242         519 AFTMN  523 (540)
Q Consensus       519 lw~~~  523 (540)
                      +|++.
T Consensus       908 vw~~~  912 (1249)
T 3sfz_A          908 VWETK  912 (1249)
T ss_dssp             EEEHH
T ss_pred             EEEcc
Confidence            99854

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.86  E-value=1.9e-20  Score=196.71  Aligned_cols=232  Identities=17%  Similarity=0.199  Sum_probs=171.2

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-----cCccee
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-----FSQKLR  336 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-----~~~~~~  336 (540)
                      ++..+++++.|++|++||..++.... ..+|.+.|.      ++..|+.++++|+.+... ..+.+...     +. ...
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~------~l~~~~~~l~sg~~dg~i-~vwd~~~~~~~~~~~-~h~  213 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------CLQYDERVIITGSSDSTV-RVWDVNTGEMLNTLI-HHC  213 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE------EEECCSSEEEEEETTSCE-EEEESSSCCEEEEEC-CCC
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE------EEEECCCEEEEEcCCCeE-EEEECCCCcEEEEEc-CCC
Confidence            45569999999999999987765433 334654432      333477777766544332 22222110     00 111


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      -.+.+++++  +. ++++|+.||+|++||+.+++.....            ..+.+|.+.|+++++.      +++|++|
T Consensus       214 ~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~v~~~~~~------~~~l~s~  272 (435)
T 1p22_A          214 EAVLHLRFN--NG-MMVTCSKDRSIAVWDMASPTDITLR------------RVLVGHRAAVNVVDFD------DKYIVSA  272 (435)
T ss_dssp             SCEEEEECC--TT-EEEEEETTSCEEEEECSSSSCCEEE------------EEECCCSSCEEEEEEE------TTEEEEE
T ss_pred             CcEEEEEEc--CC-EEEEeeCCCcEEEEeCCCCCCceee------------eEecCCCCcEEEEEeC------CCEEEEE
Confidence            235677665  44 4799999999999999987654211            1227899999999983      5799999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA  495 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~  495 (540)
                      +.|++|++||+++           ++++..+.+|...|.++++  ++.++++|+.||.|++|+. +++++.++.+|..  
T Consensus       273 ~~dg~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--  337 (435)
T 1p22_A          273 SGDRTIKVWNTST-----------CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--  337 (435)
T ss_dssp             ETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--
T ss_pred             eCCCeEEEEECCc-----------CcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--
Confidence            9999999999876           4678889999999999999  4679999999999999986 7999999999988  


Q ss_pred             CceEEEEeeCCCEEEE-ecCCeEEEEecC-Cc---------EEEeee-cCCcceecC
Q psy1242         496 SPESVVMSREGVIVVN-YERGHIAAFTMN-GN---------RLRHES-HNDNLQKTA  540 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~---------~l~~~~-~~~~V~~va  540 (540)
                      .|.+++|  ++.+|++ +.||.|++||+. ++         .+..+. |.+.|.+++
T Consensus       338 ~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  392 (435)
T 1p22_A          338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ  392 (435)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred             cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEE
Confidence            7899988  7888887 568999999986 33         566554 888887763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.86  E-value=6.4e-20  Score=187.87  Aligned_cols=236  Identities=11%  Similarity=0.044  Sum_probs=150.0

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC--cCcceeeEEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN--FSQKLRVRHN  340 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~--~~~~~~v~~~  340 (540)
                      ...+.++++.|++|++||..++.......|...+    ..+.++++...++..    .....+.+...  .-........
T Consensus        70 ~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v----~~v~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~  141 (355)
T 3vu4_A           70 TNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV----KDLFLSREFIVVSYG----DVISVFKFGNPWKRITDDIRFGG  141 (355)
T ss_dssp             SSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE----EEEEECSSEEEEEET----TEEEEEESSTTCCBSSCCEEEEE
T ss_pred             CCEEEEEECCccEEEEEECCCCcEEEEEECCCce----EEEEEcCCEEEEEEc----CEEEEEECCCCceeeEEeccCCc
Confidence            3445567888999999999877655554454332    234555555443321    11222222211  0011111233


Q ss_pred             EEEEecCCCEEEEE-EecCCcEEEEEccCCeEEEEEecccceeeeee-EEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         341 CFVTTVDSRFLLAC-GFWDNSFRVFSTDNARIVQIIFGHYGVVTSRI-VQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       341 ~~~~spdg~~llas-gs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~-~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      .+++++  ..++++ |+.||+|++||+.+++.....+.......... +..+.+|.+.|++++|+|    +|++|+||+.
T Consensus       142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~----~g~~l~s~s~  215 (355)
T 3vu4_A          142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR----KSDMVATCSQ  215 (355)
T ss_dssp             EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT----TSSEEEEEET
T ss_pred             eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC----CCCEEEEEeC
Confidence            445566  444444 78999999999997652211100000000001 334489999999999999    9999999999


Q ss_pred             CCc-EEEEEcCCCcccccCCCCCCcceEEec-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-Cc--EEEEecC--
Q psy1242         419 DCT-VLLWHWNARTQSIVGETDTPTPRATLT-G-HEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GD--LLRSLDP--  490 (540)
Q Consensus       419 Dgt-V~lWd~~~~~~~~~~~~~~~~~~~~l~-~-h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~--~~~~l~~--  490 (540)
                      |++ |+|||+++           ++++..+. + |...|.+++|+|++++|++++.|++|++|+.. +.  ....+..  
T Consensus       216 d~~~v~iwd~~~-----------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          216 DGTIIRVFKTED-----------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             TCSEEEEEETTT-----------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             CCCEEEEEECCC-----------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            999 99999876           45778887 6 99999999999999999999999999999752 21  1111111  


Q ss_pred             ----------------CC-CCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         491 ----------------PS-GFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       491 ----------------~~-~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                                      +. ...+...++|+++|+.|+++ .||.+.+|++.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence                            00 00134679999999988885 58999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.86  E-value=2.7e-20  Score=202.69  Aligned_cols=238  Identities=11%  Similarity=0.027  Sum_probs=180.0

Q ss_pred             cccceeeecCCcEEEEEccCcceEEEEcCCCC----Cc-ccCCCCcCCCCCCCCCccccC--CCCeeeccCCCCCCcccc
Q psy1242         253 TANTYVTLHMPSVVTVTANHQFAINRWNPDYA----AS-IQSPSYAETPGSPPGNLPLTL--DPILTHPTSNNNAPVPKR  325 (540)
Q Consensus       253 ~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~----~~-~~~~~~~~~v~~~~~~~~~s~--D~~l~~~g~~~~~~~~~~  325 (540)
                      ...+...+.+++..+++++ ++.|++|+..++    .. ....+|.+.   ....+.+++  |+.++++++.+... ..+
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~---~v~~~~~sp~~~~~~l~s~~~dg~v-~vw   93 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSS---VVTTVKFSPIKGSQYLCSGDESGKV-IVW   93 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTS---CEEEEEECSSTTCCEEEEEETTSEE-EEE
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCc---eEEEEEECcCCCCCEEEEecCCCEE-EEE
Confidence            3344445555555577777 789999999866    32 233456533   033678999  99888877544332 222


Q ss_pred             ccCC---------CcC---cceeeEEEEEEEecCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEE
Q psy1242         326 HLGD---------NFS---QKLRVRHNCFVTTVDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQI  389 (540)
Q Consensus       326 ~~~~---------~~~---~~~~v~~~~~~~spdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~  389 (540)
                      .+..         ...   ......+.+++|+|++++ +++++.|    +.|++||  +++.+..+              
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~v~~~d--~~~~~~~~--------------  156 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR-LCVVGEGRDNFGVFISWD--SGNSLGEV--------------  156 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEECCSSCSEEEEETT--TCCEEEEC--------------
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCE-EEEeccCCCCccEEEEEE--CCCcceee--------------
Confidence            2210         000   001223788899999996 5777766    6888888  56677666              


Q ss_pred             eeccCcceEEEEeccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC---CEEEEEEcCC-CC
Q psy1242         390 IFGHYGVVTCLSRSECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ---PVTSVAISAE-LG  464 (540)
Q Consensus       390 l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~v~~spd-g~  464 (540)
                       .+|.+.|++++|+|    ++. .+++++.|++|++||+..           .+++..+.+|..   .|++++|+|+ ++
T Consensus       157 -~~~~~~v~~~~~~~----~~~~~l~~~~~d~~v~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (615)
T 1pgu_A          157 -SGHSQRINACHLKQ----SRPMRSMTVGDDGSVVFYQGPP-----------FKFSASDRTHHKQGSFVRDVEFSPDSGE  220 (615)
T ss_dssp             -CSCSSCEEEEEECS----SSSCEEEEEETTTEEEEEETTT-----------BEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred             -ecCCccEEEEEECC----CCCcEEEEEeCCCcEEEEeCCC-----------cceeeeecccCCCCceEEEEEECCCCCC
Confidence             78999999999999    887 899999999999999765           457788899999   9999999999 99


Q ss_pred             EEEEEeCCCcEEEEeC-CCcEEEEe-c---CCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee
Q psy1242         465 LVVSGSQLGPVLVHTT-FGDLLRSL-D---PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       465 ~lasgs~Dg~v~iw~~-~g~~~~~l-~---~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~  531 (540)
                      ++++++.||.|++|+. +++.+..+ .   .|..  .|.+++|+ ++.+|+++ .|+.|++|++. ++.+..+.
T Consensus       221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG--GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS--CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEeEEecccccccCC--ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            9999999999999985 88889888 5   6777  78999999 99998884 58999999998 77777665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.86  E-value=1.4e-19  Score=190.52  Aligned_cols=242  Identities=15%  Similarity=0.259  Sum_probs=176.4

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCccee
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQKLR  336 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~~~  336 (540)
                      +..+++++.|++|++|+..++... ...+|.+.|.    .+.++  +.++++|+.+... ..+.+..      ...+.. 
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~----~~~~~--~~~l~s~~~dg~i-~vwd~~~~~~~~~~~~h~~-  200 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW----SSQMR--DNIIISGSTDRTL-KVWNAETGECIHTLYGHTS-  200 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE----EEEEE--TTEEEEEETTSCE-EEEETTTTEEEEEECCCSS-
T ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEE----EEEec--CCEEEEEeCCCeE-EEEECCcCcEEEEECCCCC-
Confidence            445889999999999998776533 2334654432    23333  4444444333222 2222111      111111 


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------eeEEEee
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------RIVQIIF  391 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------~~~~~l~  391 (540)
                       .+.+++++  ++. +++|+.||+|++||+.+++.+..+.+|...+.+                         +.+..+.
T Consensus       201 -~v~~~~~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  276 (445)
T 2ovr_B          201 -TVRCMHLH--EKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ  276 (445)
T ss_dssp             -CEEEEEEE--TTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred             -cEEEEEec--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence             25566654  553 789999999999999999988888888776643                         4566778


Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      +|.+.|.+++|      ++.++++|+.|++|++||+++           ++++..+.+|...+.+++++  +.++++|+.
T Consensus       277 ~~~~~v~~~~~------~~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  337 (445)
T 2ovr_B          277 GHTNRVYSLQF------DGIHVVSGSLDTSIRVWDVET-----------GNCIHTLTGHQSLTSGMELK--DNILVSGNA  337 (445)
T ss_dssp             CCSSCEEEEEE------CSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred             CCCCceEEEEE------CCCEEEEEeCCCeEEEEECCC-----------CCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence            99999999998      467999999999999999876           46788899999999988874  679999999


Q ss_pred             CCcEEEEeC-CCcEEEEecC---CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEee------ecCCcceec
Q psy1242         472 LGPVLVHTT-FGDLLRSLDP---PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHE------SHNDNLQKT  539 (540)
Q Consensus       472 Dg~v~iw~~-~g~~~~~l~~---~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~------~~~~~V~~v  539 (540)
                      ||.|++|+. +++.+..+..   |..  .|.+++|+  +.+|++ +.||.|++|++. |+.+..+      .+.+.|.++
T Consensus       338 dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~  413 (445)
T 2ovr_B          338 DSTVKIWDIKTGQCLQTLQGPNKHQS--AVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI  413 (445)
T ss_dssp             TSCEEEEETTTCCEEEEECSTTSCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEccCCCCCC--CEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE
Confidence            999999986 8889999986   554  78888885  677777 568999999987 8888777      366777765


Q ss_pred             C
Q psy1242         540 A  540 (540)
Q Consensus       540 a  540 (540)
                      +
T Consensus       414 ~  414 (445)
T 2ovr_B          414 R  414 (445)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=3.4e-20  Score=188.83  Aligned_cols=160  Identities=21%  Similarity=0.150  Sum_probs=128.2

Q ss_pred             EEEEEEecC--CCEEEEEEecCCcEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEeccCcc-------
Q psy1242         339 HNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI-------  407 (540)
Q Consensus       339 ~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~-------  407 (540)
                      +.+++|+|+  +. ++++|+.|+.|++||+.++...  ..+               .+|...|++++|+|...       
T Consensus       104 v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~  167 (379)
T 3jrp_A          104 VNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIII---------------DAHAIGVNSASWAPATIEEDGEHN  167 (379)
T ss_dssp             EEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEE---------------ECCTTCEEEEEECCCC--------
T ss_pred             eEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEe---------------cCCCCceEEEEEcCcccccccccc
Confidence            678889999  88 4799999999999999877432  333               68999999999998100       


Q ss_pred             --CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeC-C
Q psy1242         408 --TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE---LGLVVSGSQLGPVLVHTT-F  481 (540)
Q Consensus       408 --~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g~~lasgs~Dg~v~iw~~-~  481 (540)
                        .++.+|++|+.|++|++||++.....       ..+...+.+|...|.+++|+|+   +.+|++++.||.|++|+. +
T Consensus       168 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          168 GTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             --CTTCEEEEEETTSCEEEEEEETTTTE-------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             CCCCCCEEEEEeCCCeEEEEEecCCCcc-------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence              02789999999999999998763321       2356788899999999999999   899999999999999976 3


Q ss_pred             Cc---EEEEecC--CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         482 GD---LLRSLDP--PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       482 g~---~~~~l~~--~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      +.   ....+..  +..  .|.+++|+|+|++|++ +.||.|++|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          241 EQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             TTSCCEEEESSSSCCSS--CEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CCccceeeeeccccCCC--cEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            32   2333333  444  7899999999999887 578999999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=197.01  Aligned_cols=243  Identities=9%  Similarity=0.030  Sum_probs=166.5

Q ss_pred             cceeeecCCc--EEEEEccCcceEEEEcCCCCCcc-----------------------------------------cCCC
Q psy1242         255 NTYVTLHMPS--VVTVTANHQFAINRWNPDYAASI-----------------------------------------QSPS  291 (540)
Q Consensus       255 ~~~~~~~~~~--~~lvs~s~D~tv~~W~~~~~~~~-----------------------------------------~~~~  291 (540)
                      ++.+.+.++.  ..+++++.|++|++|+.......                                         ...+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            3344444444  56889999999999998652210                                         0123


Q ss_pred             CcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC------------cCcceeeEEEEEEEecCC-CEEEEEEecC
Q psy1242         292 YAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN------------FSQKLRVRHNCFVTTVDS-RFLLACGFWD  358 (540)
Q Consensus       292 ~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~~spdg-~~llasgs~D  358 (540)
                      |...|    ..+.|++|+.++++| . +.....+.+...            .-....-.+.+++|+|++ + +|++|+.|
T Consensus       176 h~~~v----~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~d  248 (447)
T 3dw8_B          176 HTYHI----NSISINSDYETYLSA-D-DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSK  248 (447)
T ss_dssp             CSSCC----CEEEECTTSSEEEEE-C-SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETT
T ss_pred             CCcce----EEEEEcCCCCEEEEe-C-CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCC
Confidence            44333    357899999888887 3 333333333310            011122347889999999 6 68999999


Q ss_pred             CcEEEEEccCCeE----EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccc
Q psy1242         359 NSFRVFSTDNARI----VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSI  434 (540)
Q Consensus       359 gsv~iwd~~~g~~----~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~  434 (540)
                      |+|++||+++++.    +..+.+|....   ....+.+|...|++++|+|    +|++|++++. ++|++||++..    
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~-~~v~iwd~~~~----  316 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPS---NRSFFSEIISSISDVKFSH----SGRYMMTRDY-LSVKVWDLNME----  316 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC--------CCHHHHHTTCEEEEEECT----TSSEEEEEES-SEEEEEETTCC----
T ss_pred             CeEEEEECcCCccccceeeEeccCCCcc---ccccccccCceEEEEEECC----CCCEEEEeeC-CeEEEEeCCCC----
Confidence            9999999998886    66773332210   0001123344999999999    9999999999 99999998751    


Q ss_pred             cCCCCCCcceEEeccCCCC---------------EEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC-----
Q psy1242         435 VGETDTPTPRATLTGHEQP---------------VTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG-----  493 (540)
Q Consensus       435 ~~~~~~~~~~~~l~~h~~~---------------V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~-----  493 (540)
                            .+++..+.+|...               +..++|+|++++|++|+.||.|++|+. +++.+ .+..+..     
T Consensus       317 ------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~  389 (447)
T 3dw8_B          317 ------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPR  389 (447)
T ss_dssp             ------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTT
T ss_pred             ------ccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccc
Confidence                  2456677777542               334899999999999999999999987 55544 3332210     


Q ss_pred             --------------------------CCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         494 --------------------------FASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       494 --------------------------~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                                                ...|..++|+|+|.+||++..+.+++|+-+
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~  445 (447)
T 3dw8_B          390 TVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK  445 (447)
T ss_dssp             CBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred             cccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence                                      115788999999999999888889999743

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.9e-20  Score=197.16  Aligned_cols=153  Identities=15%  Similarity=0.078  Sum_probs=123.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeE-------EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI-------VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~-------~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      +.+++|||||++ ||+|+.||+|+|||+.+++.       +.++..|.           .+|.+.|.+++|+|    +| 
T Consensus       132 v~svafSPDG~~-LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~-----------~gh~~~V~sVawSP----dg-  194 (588)
T 2j04_A          132 YHCFEWNPIESS-IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD-----------AGSKDWVTHIVWYE----DV-  194 (588)
T ss_dssp             EEEEEECSSSSC-EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC-----------TTCCCCEEEEEEET----TE-
T ss_pred             EEEEEEcCCCCE-EEEEcCCCEEEEEECCCCccccccceeeeeeeccc-----------ccccccEEEEEEcC----Cc-
Confidence            568999999995 79999999999999998753       45553333           57889999999999    88 


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEec-
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLD-  489 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~-  489 (540)
                       +++++.|++|++|++.....        .+..+++ .+|...|.+++|+  ++.+|+++ +++|++|+..+.....+. 
T Consensus       195 -Laass~D~tVrlWd~~~~~~--------~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~  262 (588)
T 2j04_A          195 -LVAALSNNSVFSMTVSASSH--------QPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT  262 (588)
T ss_dssp             -EEEEETTCCEEEECCCSSSS--------CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC
T ss_pred             -EEEEeCCCeEEEEECCCCcc--------ccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc
Confidence             88999999999999876321        1134566 4888999999999  68999997 699999998665553444 


Q ss_pred             CCCCCCCceEEEE--eeCCCEEEEec-CCeEEEEecC
Q psy1242         490 PPSGFASPESVVM--SREGVIVVNYE-RGHIAAFTMN  523 (540)
Q Consensus       490 ~~~~~~~v~~l~f--spdg~~l~s~~-dg~I~lw~~~  523 (540)
                      +|..  .|..++|  +|+|..++++. +|+ ++|..+
T Consensus       263 gh~~--~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          263 GSLE--NFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SCCS--CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             CCCc--eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            7777  7899999  99999999865 788 999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.85  E-value=5e-20  Score=193.48  Aligned_cols=215  Identities=20%  Similarity=0.282  Sum_probs=157.8

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC-------cc
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS-------QK  334 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~-------~~  334 (540)
                      +...+++++.|++|++||..++..... .+|.+.+.    .+.+  ++..+++|+.+... ..+.+.....       ..
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~----~l~~--~~~~l~s~s~dg~i-~vwd~~~~~~~~~~~~~~~  254 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLRF--NNGMMVTCSKDRSI-AVWDMASPTDITLRRVLVG  254 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE----EEEC--CTTEEEEEETTSCE-EEEECSSSSCCEEEEEECC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE----EEEE--cCCEEEEeeCCCcE-EEEeCCCCCCceeeeEecC
Confidence            556799999999999999987664332 24543332    2333  33344444333222 2222221110       01


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      ....+.++++  +++. +++|+.||+|++||+++++.+..+               .+|.+.|.+++++      +.+++
T Consensus       255 ~~~~v~~~~~--~~~~-l~s~~~dg~i~vwd~~~~~~~~~~---------------~~~~~~v~~~~~~------~~~l~  310 (435)
T 1p22_A          255 HRAAVNVVDF--DDKY-IVSASGDRTIKVWNTSTCEFVRTL---------------NGHKRGIACLQYR------DRLVV  310 (435)
T ss_dssp             CSSCEEEEEE--ETTE-EEEEETTSEEEEEETTTCCEEEEE---------------ECCSSCEEEEEEE------TTEEE
T ss_pred             CCCcEEEEEe--CCCE-EEEEeCCCeEEEEECCcCcEEEEE---------------cCCCCcEEEEEeC------CCEEE
Confidence            1123566665  6774 799999999999999999998888               7899999999984      47999


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc---------E
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD---------L  484 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~---------~  484 (540)
                      +|+.||+|++||+++           ++++..+.+|...|.++++  ++.+|++|+.||.|++|+. ++.         +
T Consensus       311 ~g~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  377 (435)
T 1p22_A          311 SGSSDNTIRLWDIEC-----------GACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC  377 (435)
T ss_dssp             EEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred             EEeCCCeEEEEECCC-----------CCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence            999999999999876           4678899999999999998  7889999999999999975 333         7


Q ss_pred             EEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCc
Q psy1242         485 LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGN  525 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~  525 (540)
                      +..+.+|.+  .|.+++|  ++.+|+++ .||.|++|++...
T Consensus       378 ~~~~~~h~~--~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          378 LRTLVEHSG--RVFRLQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEEECCCSS--CCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred             eeeccCCCC--CeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            889999988  7899999  77788874 5899999998743

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.85  E-value=5.5e-20  Score=184.02  Aligned_cols=165  Identities=16%  Similarity=0.119  Sum_probs=132.1

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCe----EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR----IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~----~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      .+.|++|+|++++ |++|+.||+|++||+.++.    ....+               .+|.+.|++++|+|.  .++++|
T Consensus        13 ~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~--~d~~~l   74 (351)
T 3f3f_A           13 LVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWELSDSW---------------RAHDSSIVAIDWASP--EYGRII   74 (351)
T ss_dssp             CEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEEEEEE---------------ECCSSCEEEEEECCG--GGCSEE
T ss_pred             ceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCcceeccee---------------ccCCCcEEEEEEcCC--CCCCEE
Confidence            3788999999995 7999999999999998763    44444               789999999999981  028999


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeC-CCc-------
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE--LGLVVSGSQLGPVLVHTT-FGD-------  483 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd--g~~lasgs~Dg~v~iw~~-~g~-------  483 (540)
                      ++|+.|++|++||++......  .....+++..+.+|...|.+++|+|+  +.++++++.||.|++|+. +++       
T Consensus        75 ~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  152 (351)
T 3f3f_A           75 ASASYDKTVKLWEEDPDQEEC--SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL  152 (351)
T ss_dssp             EEEETTSCEEEEEECTTSCTT--SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred             EEEcCCCeEEEEecCCCcccc--cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence            999999999999997643210  00111457788899999999999999  999999999999999974 222       


Q ss_pred             -----------------------------------------------------EEEEecCCCCCCCceEEEEeeCC----
Q psy1242         484 -----------------------------------------------------LLRSLDPPSGFASPESVVMSREG----  506 (540)
Q Consensus       484 -----------------------------------------------------~~~~l~~~~~~~~v~~l~fspdg----  506 (540)
                                                                           .+..+.+|..  .|.+++|+|++    
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKS--LIRSISWAPSIGRWY  230 (351)
T ss_dssp             EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCS--CEEEEEECCCSSCSS
T ss_pred             cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCc--ceeEEEECCCCCCcc
Confidence                                                                 1445566766  78999999998    


Q ss_pred             CEEEE-ecCCeEEEEecCC
Q psy1242         507 VIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       507 ~~l~s-~~dg~I~lw~~~g  524 (540)
                      ++|++ +.||.|++|++..
T Consensus       231 ~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEE
T ss_pred             eEEEEEcCCCeEEEEeCCC
Confidence            77887 5689999999873

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.6e-20  Score=211.64  Aligned_cols=230  Identities=12%  Similarity=0.106  Sum_probs=156.5

Q ss_pred             eeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCccee
Q psy1242         257 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLR  336 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~  336 (540)
                      .+.+.+++..++|++.|++||+||..++.....                   ..+..        ...+.+..    ...
T Consensus       440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~-------------------~~~~~--------~l~~~~~~----~h~  488 (902)
T 2oaj_A          440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN-------------------ASFEV--------NLSRTLNK----AKE  488 (902)
T ss_dssp             CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT-------------------BCEEE--------EHHHHTTC----SSS
T ss_pred             cccccccCcEEEEecCCCcEEEEECCCccccCC-------------------ceEEe--------echhhcCC----CCC
Confidence            345566788999999999999999876421100                   00000        00011110    112


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEE----------Eeccc-------ce-----------e--eeee
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQI----------IFGHY-------GV-----------V--TSRI  386 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~----------l~~~~-------~~-----------v--~~~~  386 (540)
                      ..+.+++|+|||+. ||+|+.||+|+||++.+++....          +....       ..           +  .-++
T Consensus       489 ~~V~svafspdg~~-LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  567 (902)
T 2oaj_A          489 LAVDKISFAAETLE-LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP  567 (902)
T ss_dssp             CCEEEEEEETTTTE-EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred             CceeEEEecCCCCe-EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence            24788999999995 79999999999999987642100          00000       00           0  0134


Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEc-----
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAIS-----  460 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~s-----  460 (540)
                      +.++.+|.+.|++|+|+|    || +|++|+.|++|+|||++......      ...+..+. +|...|++|+|+     
T Consensus       568 ~~~l~~h~~~V~svafSp----dG-~lAsgs~D~tv~lwd~~~~~~~~------~~~~~~~~~gh~~~V~sv~Fs~~~~~  636 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSN----IG-FVGIAYAAGSLMLIDRRGPAIIY------MENIREISGAQSACVTCIEFVIMEYG  636 (902)
T ss_dssp             EEEECCCSCSEEEEEECB----TS-EEEEEETTSEEEEEETTTTEEEE------EEEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred             eEEEEcCCCcEEEEEecC----Cc-EEEEEeCCCcEEEEECCCCeEEE------EeehhHhccccccceEEEEEEEEecC
Confidence            667789999999999999    99 99999999999999986521000      00012233 899999999999     


Q ss_pred             CCC---CEEEEEeCCCcEEEEeC----CCcEEEEecCCCC---CCCceEEE-Ee----------------------eCCC
Q psy1242         461 AEL---GLVVSGSQLGPVLVHTT----FGDLLRSLDPPSG---FASPESVV-MS----------------------REGV  507 (540)
Q Consensus       461 pdg---~~lasgs~Dg~v~iw~~----~g~~~~~l~~~~~---~~~v~~l~-fs----------------------pdg~  507 (540)
                      |||   ++|++|+.||+|++|+.    +|+++..+.+|..   ..+|.+++ |+                      ++|.
T Consensus       637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~  716 (902)
T 2oaj_A          637 DDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGI  716 (902)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEE
T ss_pred             CCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeE
Confidence            886   79999999999999974    7888888876631   11566776 66                      5676


Q ss_pred             EEEEecCCeEEEEecC-CcEEEee
Q psy1242         508 IVVNYERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       508 ~l~s~~dg~I~lw~~~-g~~l~~~  530 (540)
                      +|+++ +..|++|++. ++.+...
T Consensus       717 ~l~~~-~~~ir~~~~~~~k~~~k~  739 (902)
T 2oaj_A          717 VLITG-FDDIRLITLGKSKSTHKG  739 (902)
T ss_dssp             EEEEC-SSEEEEECTTCCCEEEEE
T ss_pred             EEEEe-ccceEEEeCccccceeeE
Confidence            77776 7799999986 6666444

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.8e-20  Score=196.32  Aligned_cols=227  Identities=11%  Similarity=0.105  Sum_probs=164.0

Q ss_pred             EcCCCCCcccC-CCCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCC-----Cc----CcceeeEEEEEEEecC
Q psy1242         279 WNPDYAASIQS-PSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGD-----NF----SQKLRVRHNCFVTTVD  347 (540)
Q Consensus       279 W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~-----~~----~~~~~v~~~~~~~spd  347 (540)
                      |++........ .+|.+.|    ..+.+++ |+.++++|+.+... ..+.+..     .+    .......+.+++|+|+
T Consensus        48 w~~~g~~~~~~~~~h~~~V----~~~~~s~~~~~~l~s~s~dg~v-~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  122 (437)
T 3gre_A           48 GNLRGKLIATLMENEPNSI----TSSAVSPGETPYLITGSDQGVI-KIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN  122 (437)
T ss_dssp             GGCCCCEEEEECTTTTSCE----EEEEEECSSSCEEEEEETTSEE-EEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTT
T ss_pred             ccccceEEeeeccCCCCce----EEEEECCCCCCEEEEecCCceE-EEeECcccccCcccceeeeccCCCCEEEEEEeCC
Confidence            77654333333 3455443    3677899 88888877644433 2222211     11    1012234788999999


Q ss_pred             CCEEEEEEecCCcEEEEEcc---CCeEEEEEecccceeeeeeEEEee--c--cCcceEEEE--eccCccCCCcEEEEEeC
Q psy1242         348 SRFLLACGFWDNSFRVFSTD---NARIVQIIFGHYGVVTSRIVQIIF--G--HYGVVTCLS--RSECNITADCFIASGSA  418 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~---~g~~~~~l~~~~~~v~~~~~~~l~--~--h~~~Vt~l~--~sp~~~~dg~~l~sgs~  418 (540)
                      ++. |++|+.||+|++||++   +++......+|       .+..+.  .  +...+.++.  +++    ++.+|++|+.
T Consensus       123 ~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~  190 (437)
T 3gre_A          123 FDA-FAVSSKDGQIIVLKVNHYQQESEVKFLNCE-------CIRKINLKNFGKNEYAVRMRAFVNE----EKSLLVALTN  190 (437)
T ss_dssp             SSE-EEEEETTSEEEEEEEEEEEETTEEEEEEEE-------EEEEEEGGGGSSCCCEEEEEEEECS----SCEEEEEEET
T ss_pred             CCE-EEEEeCCCEEEEEEeccccCCceeeccccc-------eeEEEEccCcccccCceEEEEEEcC----CCCEEEEEeC
Confidence            995 7999999999999994   66666655333       111111  2  667788888  557    8999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec-CCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTG--HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD-PPSGF  494 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~-~~~~~  494 (540)
                      |++|++||++.           .+++..+.+  |...|++++|+|++.+|++|+.||+|++|+. +++++.++. .|.. 
T Consensus       191 d~~i~iwd~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-  258 (437)
T 3gre_A          191 LSRVIIFDIRT-----------LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA-  258 (437)
T ss_dssp             TSEEEEEETTT-----------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE-
T ss_pred             CCeEEEEeCCC-----------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC-
Confidence            99999999876           457788887  8999999999999999999999999999976 788888886 5555 


Q ss_pred             CCceEEEEe----eCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCc
Q psy1242         495 ASPESVVMS----REGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDN  535 (540)
Q Consensus       495 ~~v~~l~fs----pdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~  535 (540)
                       +|.+++|+    +++.+|+++ .||.|++||++ ++.+..+. |...
T Consensus       259 -~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  305 (437)
T 3gre_A          259 -PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ  305 (437)
T ss_dssp             -EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC
T ss_pred             -ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence             78999665    568788885 57999999997 77777665 4433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3.1e-19  Score=176.90  Aligned_cols=183  Identities=19%  Similarity=0.182  Sum_probs=152.8

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCC---eEEEEEecccceeee-----------------------eeEEEee
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA---RIVQIIFGHYGVVTS-----------------------RIVQIIF  391 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g---~~~~~l~~~~~~v~~-----------------------~~~~~l~  391 (540)
                      .+.+++|+|+++. +++|+.|+.+++|++...   +.+..+.+|...+.+                       .....+.
T Consensus        61 ~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  139 (313)
T 3odt_A           61 FLNSVCYDSEKEL-LLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQ  139 (313)
T ss_dssp             CEEEEEEETTTTE-EEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEE
T ss_pred             cEEEEEECCCCCE-EEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecc
Confidence            3788899999995 799999999999998754   556677777766643                       4556678


Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEe
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGS  470 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs  470 (540)
                      +|...|.+++++|.   +++.+++++.|+.|++||..             +....+.. |...|.+++|+|++. +++++
T Consensus       140 ~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~  202 (313)
T 3odt_A          140 AHNASVWDAKVVSF---SENKFLTASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVDDGH-FISCS  202 (313)
T ss_dssp             CCSSCEEEEEEEET---TTTEEEEEETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred             cCCCceeEEEEccC---CCCEEEEEECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcCCCe-EEEcc
Confidence            89999999999874   78899999999999999932             35667776 999999999999998 89999


Q ss_pred             CCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         471 QLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       471 ~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      .||.|++|+. +++.+..+..|..  .|.+++|+|+|.+++++.||.|++|++. ++.+..+. |.+.|.+++
T Consensus       203 ~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~  273 (313)
T 3odt_A          203 NDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD  273 (313)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEE
T ss_pred             CCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEE
Confidence            9999999976 7899999998888  7899999999976666889999999987 77777776 777777663

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.84  E-value=8.3e-20  Score=192.79  Aligned_cols=167  Identities=16%  Similarity=0.153  Sum_probs=141.5

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEcc--CCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTD--NARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~--~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+.+++|+|++++|+++|+.||+|+|||+.  +++.+..+..             .+|...|++++|+|    ++++|++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------~~~~~~v~~~~~sp----~~~~l~~  166 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-------------FCFSKRPNAISIAE----DDTTVII  166 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-------------EECSSCEEEEEECT----TSSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-------------ccCCCCceEEEEcC----CCCEEEE
Confidence            378999999999867999999999999999  8888877721             25778999999999    9999999


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeC-CCcEEEE-ecC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE---LGLVVSGSQLGPVLVHTT-FGDLLRS-LDP  490 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g~~lasgs~Dg~v~iw~~-~g~~~~~-l~~  490 (540)
                      |+.|+.|++|++......       ..+...+.+|...|++++|+|+   +++|++|+.|++|++|+. +++.+.. +.+
T Consensus       167 ~~~~g~v~~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          167 ADKFGDVYSIDINSIPEE-------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             EETTSEEEEEETTSCCCS-------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             EeCCCcEEEEecCCcccc-------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            999999999998763311       1144577889999999999999   999999999999999976 6777776 557


Q ss_pred             CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         491 PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      |..  .|.+++|+ +|++|++ +.|+.|++||+. |+.+..+.
T Consensus       240 h~~--~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          240 HKH--FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             CSS--CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             CCC--ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            777  78999999 9999998 468999999987 77777765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.84  E-value=1.8e-19  Score=184.61  Aligned_cols=174  Identities=11%  Similarity=0.071  Sum_probs=114.4

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------eeEEEeeccCc---------ceE
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------RIVQIIFGHYG---------VVT  398 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------~~~~~l~~h~~---------~Vt  398 (540)
                      .+++.++++.++++|+.|++|++||..+++.+..+. +...|.+             ..+..+.-...         ...
T Consensus        63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~  141 (355)
T 3vu4_A           63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGG  141 (355)
T ss_dssp             EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEE
T ss_pred             EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCc
Confidence            344567777665677778888888888888777663 1112211             00000000000         112


Q ss_pred             EEEeccCccCCCcEEEE--EeCCCcEEEEEcCCCcccccCC----CCCCcc-eEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         399 CLSRSECNITADCFIAS--GSADCTVLLWHWNARTQSIVGE----TDTPTP-RATLTGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~s--gs~DgtV~lWd~~~~~~~~~~~----~~~~~~-~~~l~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      .+++++      ..++.  |+.||+|++||+.........+    .....+ +..+.+|...|++++|+|+|.+|++|+.
T Consensus       142 ~~~~s~------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~  215 (355)
T 3vu4_A          142 VCEFSN------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ  215 (355)
T ss_dssp             EEEEET------TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEEc------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC
Confidence            223332      24444  5678888888876522000000    000123 7889999999999999999999999999


Q ss_pred             CCc-EEEEeC-CCcEEEEec-C-CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         472 LGP-VLVHTT-FGDLLRSLD-P-PSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       472 Dg~-v~iw~~-~g~~~~~l~-~-~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      ||+ |++|+. +++++.++. + |..  .|.+++|+|+|++|++ +.|++|++|+++
T Consensus       216 d~~~v~iwd~~~~~~~~~~~~g~h~~--~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          216 DGTIIRVFKTEDGVLVREFRRGLDRA--DVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             TCSEEEEEETTTCCEEEEEECTTCCS--CEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             CCCEEEEEECCCCcEEEEEEcCCCCC--cEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            999 999976 799999998 4 776  7999999999999998 468999999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=3.8e-19  Score=187.11  Aligned_cols=230  Identities=18%  Similarity=0.293  Sum_probs=167.5

Q ss_pred             EEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-C---cceeeEE
Q psy1242         265 VVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-S---QKLRVRH  339 (540)
Q Consensus       265 ~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~---~~~~v~~  339 (540)
                      ..+++++.|++|++|+..++..... .+|...+.    .+.+  ++..+++|+.+... ..+.+.... .   ......+
T Consensus       170 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~----~~~~--~~~~l~s~s~dg~i-~~wd~~~~~~~~~~~~~~~~v  242 (445)
T 2ovr_B          170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR----CMHL--HEKRVVSGSRDATL-RVWDIETGQCLHVLMGHVAAV  242 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE----EEEE--ETTEEEEEETTSEE-EEEESSSCCEEEEEECCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE----EEEe--cCCEEEEEeCCCEE-EEEECCCCcEEEEEcCCcccE
Confidence            3688999999999999987654332 34553332    2333  44445444333221 222221100 0   0011225


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------eeEEEeeccC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------RIVQIIFGHY  394 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------~~~~~l~~h~  394 (540)
                      .++++  +++. +++|+.||.|++||+++++.+..+.+|...+.+                         +.+..+.+|.
T Consensus       243 ~~~~~--~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  319 (445)
T 2ovr_B          243 RCVQY--DGRR-VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ  319 (445)
T ss_dssp             EEEEE--CSSC-EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC
T ss_pred             EEEEE--CCCE-EEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc
Confidence            66665  7774 789999999999999999999999888876643                         4567778999


Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc---CCCCEEEEEEcCCCCEEEEEeC
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG---HEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~v~~spdg~~lasgs~  471 (540)
                      ..+.+++++      +++|++|+.||+|++||++.           ++++..+.+   |...|++++|+  +.++++|+.
T Consensus       320 ~~v~~~~~~------~~~l~~~~~dg~i~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~  380 (445)
T 2ovr_B          320 SLTSGMELK------DNILVSGNADSTVKIWDIKT-----------GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD  380 (445)
T ss_dssp             SCEEEEEEE------TTEEEEEETTSCEEEEETTT-----------CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET
T ss_pred             ccEEEEEEe------CCEEEEEeCCCeEEEEECCC-----------CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC
Confidence            999988874      46999999999999999876           456777776   88899999995  579999999


Q ss_pred             CCcEEEEeC-CCcEEEEe-----cCCCCCCCceEEEEeeCCCEEEEe-cCCe----EEEEecCCc
Q psy1242         472 LGPVLVHTT-FGDLLRSL-----DPPSGFASPESVVMSREGVIVVNY-ERGH----IAAFTMNGN  525 (540)
Q Consensus       472 Dg~v~iw~~-~g~~~~~l-----~~~~~~~~v~~l~fspdg~~l~s~-~dg~----I~lw~~~g~  525 (540)
                      ||.|++|+. +++.+..+     ..+.+  .|.+++|+|+|.+++++ .||+    |.+||.+..
T Consensus       381 dg~v~iwd~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          381 DGTVKLWDLKTGEFIRNLVTLESGGSGG--VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             TSEEEEEETTTCCEEEEEEECTTGGGTC--EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCeEEEEECCCCceeeeeeccccCCCCc--eEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            999999976 78888887     34455  78999999999999985 4676    999998753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.83  E-value=1.8e-19  Score=203.42  Aligned_cols=235  Identities=13%  Similarity=0.170  Sum_probs=180.0

Q ss_pred             ccceeeecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC
Q psy1242         254 ANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS  332 (540)
Q Consensus       254 ~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~  332 (540)
                      +++.+.+.+++..+++++.|++|++|+..++..... .+|.+.+    ..+.|++|+..+++++.+... ..+.+.....
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~~~dg~i-~vw~~~~~~~  131 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI----RSIAVHPTKPYVLSGSDDLTV-KLWNWENNWA  131 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE----EEEEECSSSSEEEEEETTSEE-EEEEGGGTSE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCE----EEEEEeCCCCEEEEEcCCCEE-EEEECCCCce
Confidence            344455666666799999999999999987664433 3355333    357899999777766543322 2222221100


Q ss_pred             -----cceeeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         333 -----QKLRVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       333 -----~~~~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                           ......+.+++|+| ++. ++++|+.||+|++||+.+++....+.              .+|...|.+++|+|. 
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~--------------~~~~~~v~~~~~~~~-  195 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLT--------------TGQERGVNYVDYYPL-  195 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEEE--------------CCCTTCCCEEEECCS-
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEEe--------------cCCCCCEEEEEEEEC-
Confidence                 01112378889999 666 58999999999999998887766661              234488999999872 


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                       .++.+|++|+.||+|++||+..           ++++..+.+|...|.+++|+|++.++++++.||.|++|+. +++.+
T Consensus       196 -~~~~~l~~~~~dg~i~~~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~  263 (814)
T 3mkq_A          196 -PDKPYMITASDDLTIKIWDYQT-----------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (814)
T ss_dssp             -TTCCEEEEECTTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred             -CCCCEEEEEeCCCEEEEEECCC-----------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence             2678999999999999999876           4577888999999999999999999999999999999976 78899


Q ss_pred             EEecCCCCCCCceEEEEeeCCC--EEEEecCCeEEEEecC
Q psy1242         486 RSLDPPSGFASPESVVMSREGV--IVVNYERGHIAAFTMN  523 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~--~l~s~~dg~I~lw~~~  523 (540)
                      ..+..+..  .+.+++|+|+|.  +++++.++.+.+|++.
T Consensus       264 ~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (814)
T 3mkq_A          264 KTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTVLSLG  301 (814)
T ss_dssp             EEECCSSS--SEEEEEECTTCGGGEEEEEETTEEEEEECS
T ss_pred             EEeecCCC--cEEEEEEccCCCceEEEEEeCCCEEEEEcC
Confidence            99998877  789999999998  6788888888888764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.82  E-value=1.6e-18  Score=182.94  Aligned_cols=179  Identities=21%  Similarity=0.242  Sum_probs=147.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|++++  ++++|+.||+|++||+++++.+..+               .+|.+.|++++|++.  .++.+|++|+.
T Consensus       165 V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~---------------~~h~~~v~~l~~~~~--~~~~~l~s~s~  225 (464)
T 3v7d_B          165 VWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVF---------------EGHNSTVRCLDIVEY--KNIKYIVTGSR  225 (464)
T ss_dssp             EEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEEEEEEEES--SSCEEEEEEET
T ss_pred             EEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEE---------------CCCCCccEEEEEecC--CCCCEEEEEcC
Confidence            6888889888  4799999999999999999988888               789999999999841  17789999999


Q ss_pred             CCcEEEEEcCCCcccccCC------------CCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         419 DCTVLLWHWNARTQSIVGE------------TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~------------~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                      |++|++||+..........            ......+..+.+|...|.++  ++++.++++|+.||.|++|+. +++.+
T Consensus       226 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~  303 (464)
T 3v7d_B          226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL  303 (464)
T ss_dssp             TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            9999999987643211000            00112366788999999887  578899999999999999976 88899


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      ..+.+|..  .|.+++|+|+|++++++ .||.|++||+. |+.+..+. |.+.|.+++
T Consensus       304 ~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  359 (464)
T 3v7d_B          304 YILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR  359 (464)
T ss_dssp             EEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             EEecCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence            99999988  78999999999999885 68999999986 88888775 888887763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=1.1e-18  Score=179.62  Aligned_cols=233  Identities=9%  Similarity=0.045  Sum_probs=168.3

Q ss_pred             EEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCC-----CcCcceeeE
Q psy1242         265 VVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGD-----NFSQKLRVR  338 (540)
Q Consensus       265 ~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~-----~~~~~~~v~  338 (540)
                      .++++++.|++|++||..+++......+..    ....+.+++|+..+ ++++.+. ....+.+..     .+....  .
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~d~-~i~v~d~~~~~~~~~~~~~~--~   75 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSN-DVSIIDTATNNVIATVPAGS--S   75 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGGGT-EEEEEETTTTEEEEEEECSS--S
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC----CcceEEECCCCCEEEEECCCCC-eEEEEECCCCeEEEEEECCC--C
Confidence            458899999999999998766444333221    12467889999644 4442221 112222211     011111  3


Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs  417 (540)
                      +.+++|+|++++++++++.|+.|++||+.+++.+..+               .. ...+.+++|+|    +|+.| ++++
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~---------------~~-~~~~~~~~~s~----dg~~l~~~~~  135 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV---------------KT-GKSPLGLALSP----DGKKLYVTNN  135 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------EC-SSSEEEEEECT----TSSEEEEEET
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE---------------eC-CCCcceEEECC----CCCEEEEEeC
Confidence            6788999999987788888899999999999888777               43 45689999999    89877 7888


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTT-FGDLLRSLDPPSGFA  495 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~-~g~~~~~l~~~~~~~  495 (540)
                      .|+.|++||+.+           ++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++|+. +++.+..+..+.   
T Consensus       136 ~~~~v~~~d~~~-----------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---  200 (391)
T 1l0q_A          136 GDKTVSVINTVT-----------KAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA---  200 (391)
T ss_dssp             TTTEEEEEETTT-----------TEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---
T ss_pred             CCCEEEEEECCC-----------CcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC---
Confidence            899999999876           3456666655 457999999999877 67788999999986 677777776543   


Q ss_pred             CceEEEEeeCCCEEEEe----cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         496 SPESVVMSREGVIVVNY----ERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~----~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      .+.+++|+|+|++|+++    .++.|++||+. ++.+..+.....+.++
T Consensus       201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  249 (391)
T 1l0q_A          201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI  249 (391)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEE
Confidence            57899999999988874    47999999987 6666666544444443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.82  E-value=3.5e-19  Score=183.18  Aligned_cols=216  Identities=13%  Similarity=0.170  Sum_probs=157.1

Q ss_pred             CcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccC-CCCeeeccCCCCCCccccccCCC-----cC------------
Q psy1242         272 HQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTL-DPILTHPTSNNNAPVPKRHLGDN-----FS------------  332 (540)
Q Consensus       272 ~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~-D~~l~~~g~~~~~~~~~~~~~~~-----~~------------  332 (540)
                      .+.++++|+....... ...+|.+.|    ..+.+++ |+.++++|+.+... ..+.+...     +.            
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~~l~~~~~dg~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~   95 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGI----NTLDIEPVEGRYMLSGGSDGVI-VLYDLENSSRQSYYTCKAVCSIGRDHP   95 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCE----EEEEECTTTCCEEEEEETTSCE-EEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred             ccCcceeeccccCcceeeeeccCCcE----EEEEEecCCCCEEEEEcCCCeE-EEEECCCCcccceEecccccccccccc
Confidence            3455677776544422 233455333    3577888 88877777544332 22222211     00            


Q ss_pred             cceeeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         333 QKLRVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       333 ~~~~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      ....-.+.+++|+| ++. +|++|+.||.|++||+.+++....+                .+...+.+++++|.. .++.
T Consensus        96 ~~~~~~v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~  157 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTG-MFTSSSFDKTLKVWDTNTLQTADVF----------------NFEETVYSHHMSPVS-TKHC  157 (408)
T ss_dssp             TCCSSCEEEEEECTTCTT-CEEEEETTSEEEEEETTTTEEEEEE----------------ECSSCEEEEEECSSC-SSCC
T ss_pred             ccCCCcEEEEEEccCCCc-EEEEEeCCCeEEEeeCCCCccceec----------------cCCCceeeeEeecCC-CCCc
Confidence            01223478888999 555 5899999999999999999888776                377889999998821 1344


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-CCc-EEEEe
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT-FGD-LLRSL  488 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~-~g~-~~~~l  488 (540)
                      ++++|+.|+.|++||++.           ++++..+.+|...|++++|+|++. ++++|+.||.|++|+. ++. .+..+
T Consensus       158 ~~~~~~~~~~v~~~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~  226 (408)
T 4a11_B          158 LVAVGTRGPKVQLCDLKS-----------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL  226 (408)
T ss_dssp             EEEEEESSSSEEEEESSS-----------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEEC
T ss_pred             EEEEEcCCCeEEEEeCCC-----------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccc
Confidence            999999999999999876           456788899999999999999998 5899999999999976 332 44444


Q ss_pred             ---------------cCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         489 ---------------DPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       489 ---------------~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                                     ..|..  .|.+++|+|+|++|++ +.||.|++|++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          227 DQHNGKKSQAVESANTAHNG--KVNGLCFTSDGLHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             CTTTTCSCCCTTTSSCSCSS--CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccceeeccccccccC--ceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence                           34555  7899999999999888 468999999976

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.82  E-value=1e-18  Score=175.84  Aligned_cols=230  Identities=10%  Similarity=-0.052  Sum_probs=164.2

Q ss_pred             cceeeecCCcE-EEEEccCcceEEEEcC-CCCCcccCCC--CcCCCCCCCCCccccCCCCeeeccCCCCCCcc----c--
Q psy1242         255 NTYVTLHMPSV-VTVTANHQFAINRWNP-DYAASIQSPS--YAETPGSPPGNLPLTLDPILTHPTSNNNAPVP----K--  324 (540)
Q Consensus       255 ~~~~~~~~~~~-~lvs~s~D~tv~~W~~-~~~~~~~~~~--~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~----~--  324 (540)
                      ++.+.+.++.. .+++++.|+.|++|+. .+.......+  |...+    ..+.+++ +.++++++.+.....    .  
T Consensus        59 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v----~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~  133 (342)
T 1yfq_A           59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGI----CRICKYG-DDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             EEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCE----EEEEEET-TTEEEEEETTSEEEEECHHHHT
T ss_pred             eEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCce----EEEEeCC-CCEEEEEcCCCeEEEEcccccc
Confidence            34444555555 6899999999999999 7766544445  55333    2466777 655555543322210    0  


Q ss_pred             -------cccCCCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeE--EEEEecccceeeeeeEEEeeccC
Q psy1242         325 -------RHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARI--VQIIFGHYGVVTSRIVQIIFGHY  394 (540)
Q Consensus       325 -------~~~~~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~--~~~l~~~~~~v~~~~~~~l~~h~  394 (540)
                             .+....+.  ....+.++++++++   +++|+.|+.|++||+++ +..  ....               ..|.
T Consensus       134 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~---------------~~~~  193 (342)
T 1yfq_A          134 DGVIAVKNLNSNNTK--VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEE---------------SGLK  193 (342)
T ss_dssp             TBCEEEEESCSSSSS--SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEE---------------CSCS
T ss_pred             cccccccCCeeeEEe--eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeee---------------cCCC
Confidence                   11111122  22346788888877   68888999999999987 543  2222               5788


Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC---------CEEEEEEcCCCCE
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ---------PVTSVAISAELGL  465 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~---------~V~~v~~spdg~~  465 (540)
                      ..|++++|+|.   +++++++|+.||.|++|+++.....     ...++...+.+|..         .|.+++|+|++++
T Consensus       194 ~~i~~i~~~~~---~~~~l~~~~~dg~i~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  265 (342)
T 1yfq_A          194 YQIRDVALLPK---EQEGYACSSIDGRVAVEFFDDQGDD-----YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF  265 (342)
T ss_dssp             SCEEEEEECSG---GGCEEEEEETTSEEEEEECCTTCCS-----TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred             CceeEEEECCC---CCCEEEEEecCCcEEEEEEcCCCcc-----cccccceeeecccccccccccceeEEEEEEcCCCCE
Confidence            89999999972   3789999999999999998763100     01246677777765         9999999999999


Q ss_pred             EEEEeCCCcEEEEeC-CCcEEEEecCC-CCCCCceEEEEeeCCCEEEE-ecCCe-EEEEe
Q psy1242         466 VVSGSQLGPVLVHTT-FGDLLRSLDPP-SGFASPESVVMSREGVIVVN-YERGH-IAAFT  521 (540)
Q Consensus       466 lasgs~Dg~v~iw~~-~g~~~~~l~~~-~~~~~v~~l~fspdg~~l~s-~~dg~-I~lw~  521 (540)
                      |++|+.||.|++|+. +++.+..+..| ..  +|.+++  |+|++|++ +.||. .+.|.
T Consensus       266 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          266 LYTAGSDGIISCWNLQTRKKIKNFAKFNED--SVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEECCCCSSS--EEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             EEEecCCceEEEEcCccHhHhhhhhcccCC--CceEec--CCCCeEEEEecCCccccccc
Confidence            999999999999987 78899999988 77  788988  99999988 56787 44443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.81  E-value=6.5e-19  Score=185.01  Aligned_cols=180  Identities=14%  Similarity=0.159  Sum_probs=142.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE-EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV-QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      +.+++|+|++..+|++|+.||+|++|++.++... ..+         .....+.+|...|.+++|+|.   ++..|++++
T Consensus       184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~h~~~v~~v~~~p~---~~~~l~s~~  251 (430)
T 2xyi_A          184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI---------DAKNIFTGHTAVVEDVAWHLL---HESLFGSVA  251 (430)
T ss_dssp             CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE---------ECSEEECCCSSCEEEEEECSS---CTTEEEEEE
T ss_pred             eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee---------ccceeecCCCCCEeeeEEeCC---CCCEEEEEe
Confidence            6788999999845799999999999999874321 000         011233789999999999994   578999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeC-C-CcEEEEecCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTT-F-GDLLRSLDPPSGF  494 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~-~-g~~~~~l~~~~~~  494 (540)
                      .|+.|++||++....        .+++..+.+|...|++++|+|++. ++++|+.||.|++|+. + +..+..+..|.. 
T Consensus       252 ~dg~i~i~d~~~~~~--------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~-  322 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNT--------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD-  322 (430)
T ss_dssp             TTSEEEEEETTCSCS--------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS-
T ss_pred             CCCeEEEEECCCCCC--------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC-
Confidence            999999999986321        246777889999999999999987 7899999999999976 3 567888888887 


Q ss_pred             CCceEEEEeeCCC-EEEE-ecCCeEEEEecCC---------------cEEEeee-cCCcceecC
Q psy1242         495 ASPESVVMSREGV-IVVN-YERGHIAAFTMNG---------------NRLRHES-HNDNLQKTA  540 (540)
Q Consensus       495 ~~v~~l~fspdg~-~l~s-~~dg~I~lw~~~g---------------~~l~~~~-~~~~V~~va  540 (540)
                       .|.+++|+|+++ +|++ +.|+.|++|++..               .++.... |.+.|++++
T Consensus       323 -~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  385 (430)
T 2xyi_A          323 -EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  385 (430)
T ss_dssp             -CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEE
T ss_pred             -CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEE
Confidence             789999999995 5665 5789999999874               5555553 777787653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2.6e-19  Score=201.81  Aligned_cols=204  Identities=18%  Similarity=0.121  Sum_probs=151.3

Q ss_pred             cceeeecCC--cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC
Q psy1242         255 NTYVTLHMP--SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS  332 (540)
Q Consensus       255 ~~~~~~~~~--~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~  332 (540)
                      ++.+.+.++  +..++|++.|++|++|+..++...                                   ....+..+  
T Consensus        56 V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~-----------------------------------~~~~~~~h--   98 (753)
T 3jro_A           56 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS-----------------------------------QIAVHAVH--   98 (753)
T ss_dssp             EEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEE-----------------------------------EEEEECCC--
T ss_pred             eEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccc-----------------------------------ccccccCC--
Confidence            334444443  566999999999999997542100                                   00011111  


Q ss_pred             cceeeEEEEEEEecC--CCEEEEEEecCCcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCcc-
Q psy1242         333 QKLRVRHNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI-  407 (540)
Q Consensus       333 ~~~~v~~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~-  407 (540)
                         ...+.+++|+|+  ++ ++++|+.||+|++||+.++..  ...+               .+|...|++++|+|... 
T Consensus        99 ---~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~---------------~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           99 ---SASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIII---------------DAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             ---SSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEE---------------ECCSSCEEEEEECCCC--
T ss_pred             ---CCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEe---------------ecCCCceEEEEecCcccc
Confidence               112678889999  88 479999999999999987743  2333               68999999999998100 


Q ss_pred             --------CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC---CCEEEEEeCCCcEE
Q psy1242         408 --------TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE---LGLVVSGSQLGPVL  476 (540)
Q Consensus       408 --------~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd---g~~lasgs~Dg~v~  476 (540)
                              .++..|++|+.||+|++||++.....       ..+...+.+|...|++++|+|+   +.++++|+.||.|+
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~  232 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI  232 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTE-------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCccc-------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence                    02789999999999999998764321       2466788999999999999999   89999999999999


Q ss_pred             EEeC-CCc-----EEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         477 VHTT-FGD-----LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       477 iw~~-~g~-----~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      +|+. +++     .+.....+..  .|.+++|+|+|++|+++ .||.|++|+++
T Consensus       233 iwd~~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          233 IWTQDNEQGPWKKTLLKEEKFPD--VLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEESSSSSCCBCCBSSSSCCSS--CCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EecCCCCCCcceeEEeccCCCCC--ceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            9975 332     2222333555  78999999999999884 68999999987

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.80  E-value=7.8e-19  Score=177.76  Aligned_cols=237  Identities=11%  Similarity=0.038  Sum_probs=152.5

Q ss_pred             ecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccc--cCCCCeeeccCCCCCCccccccCC
Q psy1242         252 VTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPL--TLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       252 ~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~--s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      ...++...+.+++..+++++.|++|++|+..+........|...+.    .+.+  ++++.++++++.+.. ...+.+..
T Consensus        86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~  160 (368)
T 3mmy_A           86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK----TIHWIKAPNYSCVMTGSWDKT-LKFWDTRS  160 (368)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE----EEEEEECSSCEEEEEEETTSE-EEEECSSC
T ss_pred             cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE----EEEEEeCCCCCEEEEccCCCc-EEEEECCC
Confidence            3344455566666679999999999999998766544444543332    3445  566655554432222 12222211


Q ss_pred             C-cCcceee--EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         330 N-FSQKLRV--RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       330 ~-~~~~~~v--~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                      . .......  .+.++.+.  +.. +++++.|+.+++|+++.........             ...+...+.++++.+  
T Consensus       161 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~--  222 (368)
T 3mmy_A          161 SNPMMVLQLPERCYCADVI--YPM-AVVATAERGLIVYQLENQPSEFRRI-------------ESPLKHQHRCVAIFK--  222 (368)
T ss_dssp             SSCSEEEECSSCEEEEEEE--TTE-EEEEEGGGCEEEEECSSSCEEEEEC-------------CCSCSSCEEEEEEEE--
T ss_pred             CcEEEEEecCCCceEEEec--CCe-eEEEeCCCcEEEEEeccccchhhhc-------------cccccCCCceEEEcc--
Confidence            0 0000110  13333333  333 4566667777777776544332220             023445566666665  


Q ss_pred             cCCCc----EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC------------CEEEEEEcCCCCEEEEEe
Q psy1242         407 ITADC----FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ------------PVTSVAISAELGLVVSGS  470 (540)
Q Consensus       407 ~~dg~----~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~------------~V~~v~~spdg~~lasgs  470 (540)
                        ++.    .+++|+.|+.|++|+++....        ..++..+.+|..            .|++++|+|++++|++|+
T Consensus       223 --~~~~~~~~~~~~~~dg~i~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~  292 (368)
T 3mmy_A          223 --DKQNKPTGFALGSIEGRVAIHYINPPNP--------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG  292 (368)
T ss_dssp             --CTTSCEEEEEEEETTSEEEEEESSCSCH--------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE
T ss_pred             --cCCCCCCeEEEecCCCcEEEEecCCCCc--------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc
Confidence              333    399999999999999986431        135667777766            799999999999999999


Q ss_pred             CCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCe---EEEEecC
Q psy1242         471 QLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGH---IAAFTMN  523 (540)
Q Consensus       471 ~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~---I~lw~~~  523 (540)
                      .||.|++|+. +++++..+..|..  +|.+++|+|+|++|+++ +|+.   +.+|+.+
T Consensus       293 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          293 SDGRFSFWDKDARTKLKTSEQLDQ--PISACCFNHNGNIFAYASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             TTSCEEEEETTTTEEEEECCCCSS--CEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred             cCCeEEEEECCCCcEEEEecCCCC--CceEEEECCCCCeEEEEecccccccccccCCC
Confidence            9999999976 7889999998887  88999999999999985 4554   3445444

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.80  E-value=1.1e-17  Score=172.01  Aligned_cols=224  Identities=9%  Similarity=0.061  Sum_probs=164.5

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCCC-----cCcceeeEE
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDN-----FSQKLRVRH  339 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~~-----~~~~~~v~~  339 (540)
                      ++++++.|++|++||..+++......+..    ....+.+++|+..+ ++++.. .....+.+...     +...  ..+
T Consensus        46 l~~~~~~d~~i~v~d~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~~-~~v~v~d~~~~~~~~~~~~~--~~~  118 (391)
T 1l0q_A           46 VYVANAHSNDVSIIDTATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMAS-STLSVIDTTSNTVAGTVKTG--KSP  118 (391)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECS--SSE
T ss_pred             EEEECCCCCeEEEEECCCCeEEEEEECCC----CccceEECCCCCEEEEEECCC-CEEEEEECCCCeEEEEEeCC--CCc
Confidence            35788899999999998766544433332    23457789998755 443222 22222222211     1111  125


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEeC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGSA  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~  418 (540)
                      .+++|+|+|+.++++++.|+.|++||+.+++.+..+               ..| ..+.+++|+|    ++++| ++++.
T Consensus       119 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---------------~~~-~~~~~~~~~~----dg~~l~~~~~~  178 (391)
T 1l0q_A          119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---------------SVG-RSPKGIAVTP----DGTKVYVANFD  178 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------ECC-SSEEEEEECT----TSSEEEEEETT
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE---------------ecC-CCcceEEECC----CCCEEEEEeCC
Confidence            788899999987789999999999999999988777               444 4568999999    88877 67788


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeC-CCcEEEEecCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS---QLGPVLVHTT-FGDLLRSLDPPSGF  494 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs---~Dg~v~iw~~-~g~~~~~l~~~~~~  494 (540)
                      |++|++||+++           ++.+..+. +...+.+++|+|+++.+++++   .++.|++|+. +++.+..+..+.  
T Consensus       179 ~~~v~~~d~~~-----------~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  244 (391)
T 1l0q_A          179 SMSISVIDTVT-----------NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP--  244 (391)
T ss_dssp             TTEEEEEETTT-----------TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS--
T ss_pred             CCEEEEEECCC-----------CeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC--
Confidence            99999999876           23444443 566789999999999988887   6899999986 788888887765  


Q ss_pred             CCceEEEEeeCCCEEE-E-ecCCeEEEEecC-CcEEEeee
Q psy1242         495 ASPESVVMSREGVIVV-N-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~-s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                       .+.+++|+|+|++|+ + +.++.|++||+. |+.+..+.
T Consensus       245 -~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          245 -DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             -CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence             468999999999774 4 458999999987 77766654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.80  E-value=8.7e-19  Score=176.08  Aligned_cols=180  Identities=12%  Similarity=-0.005  Sum_probs=122.6

Q ss_pred             ccceeEEEecCCCCCe-----eeecccceeeecC---CcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCcc
Q psy1242         234 LDDVCMSLKFPSNSPI-----CHVTANTYVTLHM---PSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLP  304 (540)
Q Consensus       234 ~~~~~~~~~f~~~~~~-----~~~~~~~~~~~~~---~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~  304 (540)
                      ++..+..+.+++++..     .|....+...+.+   +...+||+|.|++||+||+.+++....+ +|...+.       
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~-------  227 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA-------  227 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C-------
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee-------
Confidence            5777778888887764     2334444444444   6788999999999999999876543322 1211110       


Q ss_pred             ccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEEEEecCCCE-----------EEEEEecCCcEEEEEccCCeEEE
Q psy1242         305 LTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRF-----------LLACGFWDNSFRVFSTDNARIVQ  373 (540)
Q Consensus       305 ~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~spdg~~-----------llasgs~Dgsv~iwd~~~g~~~~  373 (540)
                                                       .+.+++|+|+|+.           .+++|+.|++|++||..+++.+.
T Consensus       228 ---------------------------------~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~  274 (356)
T 2w18_A          228 ---------------------------------SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVG  274 (356)
T ss_dssp             ---------------------------------CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEE
T ss_pred             ---------------------------------eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEE
Confidence                                             1334444555543           35889999999999999999876


Q ss_pred             EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCC
Q psy1242         374 IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQP  453 (540)
Q Consensus       374 ~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~  453 (540)
                      .+...          .-.+|.+.+.+.++      ++..+++|+.|++|+|||+.+           ++++.++.+|...
T Consensus       275 v~~~~----------~p~Gh~~~~lsg~~------sg~~lASgS~DgTIkIWDl~t-----------Gk~l~tL~gH~~~  327 (356)
T 2w18_A          275 VMLYC----------LPPGQAGRFLEGDV------KDHCAAAILTSGTIAIWDLLL-----------GQCTALLPPVSDQ  327 (356)
T ss_dssp             EEEEC----------CCTTCCCCEEEEEE------ETTEEEEEETTSCEEEEETTT-----------CSEEEEECCC--C
T ss_pred             EEEee----------ccCCCcceeEcccc------CCCEEEEEcCCCcEEEEECCC-----------CcEEEEecCCCCC
Confidence            55100          00367666544433      567999999999999999987           5688999999876


Q ss_pred             EE-EEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         454 VT-SVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       454 V~-~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                      +. +++|+|||++|+||+.|++|+||+.
T Consensus       328 vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            55 6899999999999999999999963

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=8.6e-19  Score=178.06  Aligned_cols=221  Identities=12%  Similarity=-0.006  Sum_probs=145.0

Q ss_pred             EEEccCcceEEEEcCCCCC---------cc--cCCCCcCCCCCCCCCccccC--CCCeeeccCCCCCCccccccCCC---
Q psy1242         267 TVTANHQFAINRWNPDYAA---------SI--QSPSYAETPGSPPGNLPLTL--DPILTHPTSNNNAPVPKRHLGDN---  330 (540)
Q Consensus       267 lvs~s~D~tv~~W~~~~~~---------~~--~~~~~~~~v~~~~~~~~~s~--D~~l~~~g~~~~~~~~~~~~~~~---  330 (540)
                      ++|+|.|++|++|+.....         ..  ....|.+    ....+.+++  ++.++++++.+... ..+.+...   
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~s~s~dg~i-~~wd~~~~~~~  162 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN----EIIYMYGHNEVNTEYFIWADNRGTI-GFQSYEDDSQY  162 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS----CEEEEECCC---CCEEEEEETTCCE-EEEESSSSCEE
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC----CEEEEEcCCCCCCCEEEEEeCCCcE-EEEECCCCcEE
Confidence            8899999999999876321         01  1112222    233577888  88777766544332 22222211   


Q ss_pred             --cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEE-EEEecccceeeeeeEEEeec-cCcceEEEEeccCc
Q psy1242         331 --FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV-QIIFGHYGVVTSRIVQIIFG-HYGVVTCLSRSECN  406 (540)
Q Consensus       331 --~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~~~~~~~l~~-h~~~Vt~l~~sp~~  406 (540)
                        ........+.+++|+|+|. +|++|+.||+|++||+++++.+ ..+               .+ |.+.|++++|+|  
T Consensus       163 ~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~---------------~~~h~~~v~~l~fs~--  224 (343)
T 3lrv_A          163 IVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRF---------------PVDEEAKIKEVKFAD--  224 (343)
T ss_dssp             EEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEEC---------------CCCTTSCEEEEEECT--
T ss_pred             EEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEE---------------eccCCCCEEEEEEeC--
Confidence              1111122367889999999 5799999999999999998876 666               66 999999999999  


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCE--EEEEEcCCCCEEEEEeC-CCcEEEEeC-CC
Q psy1242         407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPV--TSVAISAELGLVVSGSQ-LGPVLVHTT-FG  482 (540)
Q Consensus       407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V--~~v~~spdg~~lasgs~-Dg~v~iw~~-~g  482 (540)
                        +|.+|++++ |++|++||++.....        ..+..+..|...+  .+++|+|++++|++++. |+.++||+. ++
T Consensus       225 --~g~~l~s~~-~~~v~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          225 --NGYWMVVEC-DQTVVCFDLRKDVGT--------LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             --TSSEEEEEE-SSBEEEEETTSSTTC--------BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             --CCCEEEEEe-CCeEEEEEcCCCCcc--------eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence              999999999 559999999874311        1122222344444  46999999999999998 999999965 22


Q ss_pred             cEEEEecCCCCCCCceEEEEee---CCCEEEE-ecCCeEEEEecCCcEE
Q psy1242         483 DLLRSLDPPSGFASPESVVMSR---EGVIVVN-YERGHIAAFTMNGNRL  527 (540)
Q Consensus       483 ~~~~~l~~~~~~~~v~~l~fsp---dg~~l~s-~~dg~I~lw~~~g~~l  527 (540)
                      ......    .  ++..++|++   ++..+++ +.|+.+.++-..+...
T Consensus       294 ~~~~~~----~--~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~  336 (343)
T 3lrv_A          294 TKNWTK----D--EESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSF  336 (343)
T ss_dssp             TCSEEE----E--EEEECCC----CCCCEEEEEEETTEEEEEEECSSEE
T ss_pred             ccceEe----c--CceeEecCccccccceeEEEecCCceEEEEecCCeE
Confidence            211111    2  456777877   7776665 5678888776555443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.79  E-value=7.8e-19  Score=182.33  Aligned_cols=183  Identities=7%  Similarity=-0.019  Sum_probs=121.9

Q ss_pred             EEEEEEEec--------CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC
Q psy1242         338 RHNCFVTTV--------DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA  409 (540)
Q Consensus       338 ~~~~~~~sp--------dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d  409 (540)
                      .+.+++|+|        |++ +||+|+.|++|+|||+.++..+..+               .+|.+.|.+++|+|    +
T Consensus       138 ~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~~~~~---------------~~~~~~v~~v~~~p----~  197 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGPILAG---------------YPLSSPGISVQFRP----S  197 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEEEEEE---------------EECSSCEEEEEEET----T
T ss_pred             ceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCceeeee---------------cCCCCCcEEEEECC----C
Confidence            377888887        777 6899999999999999988877776               68899999999999    6


Q ss_pred             C-cEEEEEeCCCcEEEEEcCCCcccccCCC--------------CCCcceEEeccCCCCEEEEEEc-CCCCEEEEEeCCC
Q psy1242         410 D-CFIASGSADCTVLLWHWNARTQSIVGET--------------DTPTPRATLTGHEQPVTSVAIS-AELGLVVSGSQLG  473 (540)
Q Consensus       410 g-~~l~sgs~DgtV~lWd~~~~~~~~~~~~--------------~~~~~~~~l~~h~~~V~~v~~s-pdg~~lasgs~Dg  473 (540)
                      + .+|++|+.|++|++||+++.........              ..........+|...|.++.|+ +++..+++++.|+
T Consensus       198 ~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~  277 (393)
T 4gq1_A          198 NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG  277 (393)
T ss_dssp             EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS
T ss_pred             CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC
Confidence            6 5899999999999999876442210000              0001112345788899999987 7999999999999


Q ss_pred             cEEEEeC-CCcEEEEecCCCCCC----------------CceEEEEee--CCCEEEEe-cCCeEEEEecC-CcEEEe-ee
Q psy1242         474 PVLVHTT-FGDLLRSLDPPSGFA----------------SPESVVMSR--EGVIVVNY-ERGHIAAFTMN-GNRLRH-ES  531 (540)
Q Consensus       474 ~v~iw~~-~g~~~~~l~~~~~~~----------------~v~~l~fsp--dg~~l~s~-~dg~I~lw~~~-g~~l~~-~~  531 (540)
                      ++++|+. .++....+..+....                ......|+|  ++.++++| .||.|++||+. |+.+.. ..
T Consensus       278 ~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~  357 (393)
T 4gq1_A          278 AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ  357 (393)
T ss_dssp             EEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred             CEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            9999976 555444444433200                112233433  34456665 48999999987 655544 35


Q ss_pred             cCCcceecC
Q psy1242         532 HNDNLQKTA  540 (540)
Q Consensus       532 ~~~~V~~va  540 (540)
                      |..+|.+|+
T Consensus       358 ~~~~V~sva  366 (393)
T 4gq1_A          358 LGMPIVDFC  366 (393)
T ss_dssp             CSSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            888888774

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.78  E-value=3.1e-17  Score=171.06  Aligned_cols=225  Identities=11%  Similarity=0.082  Sum_probs=162.0

Q ss_pred             eeeecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCC-----
Q psy1242         257 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGD-----  329 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~-----  329 (540)
                      ...+++++.++++++.|++|++|+..+....... .|.    .....+.+++|+..+ +++..+. ....+.+..     
T Consensus       174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~  248 (433)
T 3bws_A          174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG----KWSKILLYDPIRDLVYCSNWISE-DISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS----SSEEEEEEETTTTEEEEEETTTT-EEEEEETTTTEEEE
T ss_pred             EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC----CCeeEEEEcCCCCEEEEEecCCC-cEEEEECCCCcEEE
Confidence            3455666778999999999999998775543322 232    222357788888655 3432222 222222211     


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEe--------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGF--------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS  401 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs--------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~  401 (540)
                      .+..  ...+.+++++|+|+.+ ++++        .|+.|++||+.+++.+..+                .|...+.+++
T Consensus       249 ~~~~--~~~~~~~~~~~~g~~l-~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~----------------~~~~~~~~~~  309 (433)
T 3bws_A          249 KTDK--IGLPRGLLLSKDGKEL-YIAQFSASNQESGGGRLGIYSMDKEKLIDTI----------------GPPGNKRHIV  309 (433)
T ss_dssp             ECCC--CSEEEEEEECTTSSEE-EEEEEESCTTCSCCEEEEEEETTTTEEEEEE----------------EEEECEEEEE
T ss_pred             EecC--CCCceEEEEcCCCCEE-EEEECCCCccccCCCeEEEEECCCCcEEeec----------------cCCCCcceEE
Confidence            1111  1236788899999975 5555        4889999999998877655                4566889999


Q ss_pred             eccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---------
Q psy1242         402 RSECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ---------  471 (540)
Q Consensus       402 ~sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~---------  471 (540)
                      |+|    +++ .+++++.|+.|++||+.+           ++.+..+. +...+.+++|+|+++++++++.         
T Consensus       310 ~~~----~g~~l~~~~~~~~~v~v~d~~~-----------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  373 (433)
T 3bws_A          310 SGN----TENKIYVSDMCCSKIEVYDLKE-----------KKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGY  373 (433)
T ss_dssp             ECS----STTEEEEEETTTTEEEEEETTT-----------TEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCT
T ss_pred             ECC----CCCEEEEEecCCCEEEEEECCC-----------CcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccc
Confidence            999    886 456778999999999875           33455554 6778999999999998888876         


Q ss_pred             ------CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-c-CCeEEEEecCC
Q psy1242         472 ------LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-E-RGHIAAFTMNG  524 (540)
Q Consensus       472 ------Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~-dg~I~lw~~~g  524 (540)
                            ||.|++|+. +++.+..+..+.   .+.+++|+|+|++|+++ . ++.|++|++++
T Consensus       374 ~~~g~~dg~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          374 LKKGLVLGKVYVIDTTTDTVKEFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TSCCSSCCEEEEEETTTTEEEEEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ccccccceEEEEEECCCCcEEEEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                  579999976 788888887643   57999999999998864 3 89999999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.78  E-value=2.2e-17  Score=172.25  Aligned_cols=241  Identities=7%  Similarity=0.011  Sum_probs=171.5

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccC------CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-c
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQS------PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-F  331 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~------~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-~  331 (540)
                      .+.++..++++++.|++|++||..+++....      .+|.+.    ...+.+++++.++++++.+... ..+.+... .
T Consensus       129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~s~~~d~~v-~~~d~~~~~~  203 (433)
T 3bws_A          129 RFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGF----VETISIPEHNELWVSQMQANAV-HVFDLKTLAY  203 (433)
T ss_dssp             EESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCE----EEEEEEGGGTEEEEEEGGGTEE-EEEETTTCCE
T ss_pred             EEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCc----eeEEEEcCCCEEEEEECCCCEE-EEEECCCceE
Confidence            3444677788999999999999987654321      123322    2246678888877776432222 22222110 0


Q ss_pred             Cc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         332 SQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       332 ~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                      ..   .....+.+++|+|+++.++++++.|+.|++||+.+++.+..+               .. ...+.+++|+|    
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---------------~~-~~~~~~~~~~~----  263 (433)
T 3bws_A          204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT---------------DK-IGLPRGLLLSK----  263 (433)
T ss_dssp             EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---------------CC-CSEEEEEEECT----
T ss_pred             EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---------------cC-CCCceEEEEcC----
Confidence            00   011236788999999987778878999999999999887776               33 34589999999    


Q ss_pred             CCcEEEEEe--------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q psy1242         409 ADCFIASGS--------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLVHT  479 (540)
Q Consensus       409 dg~~l~sgs--------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~  479 (540)
                      +|+.|++++        .|+.|++||+.+.           +.+..+ .|...+.+++|+|+++ ++++++.|+.|++|+
T Consensus       264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~-----------~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d  331 (433)
T 3bws_A          264 DGKELYIAQFSASNQESGGGRLGIYSMDKE-----------KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYD  331 (433)
T ss_dssp             TSSEEEEEEEESCTTCSCCEEEEEEETTTT-----------EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCCccccCCCeEEEEECCCC-----------cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence            999999888        5889999998752           333333 5666899999999997 557778999999998


Q ss_pred             C-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec----------------CCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         480 T-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----------------RGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       480 ~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~----------------dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      . +++.+..+.. ..  .+.+++|+|+|++|+++.                ||.|++||+. ++.+..+.....+.++
T Consensus       332 ~~~~~~~~~~~~-~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~  406 (433)
T 3bws_A          332 LKEKKVQKSIPV-FD--KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGL  406 (433)
T ss_dssp             TTTTEEEEEEEC-SS--SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             CCCCcEEEEecC-CC--CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceE
Confidence            7 6777777763 33  579999999999887743                3699999986 7777776655555554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.77  E-value=4.7e-17  Score=170.36  Aligned_cols=228  Identities=11%  Similarity=0.008  Sum_probs=158.6

Q ss_pred             ceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCC--CCccccccCCCcCc---ceeeEEEEEEEecCC
Q psy1242         274 FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN--APVPKRHLGDNFSQ---KLRVRHNCFVTTVDS  348 (540)
Q Consensus       274 ~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~--~~~~~~~~~~~~~~---~~~v~~~~~~~spdg  348 (540)
                      ++|++||..+........|.+.    ...+.|++|+..++.++...  .....+.+......   .....+.+++|+|||
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~----v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg  234 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQP----LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG  234 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSC----EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS
T ss_pred             ceEEEEcCCCCCCEEEeCCCCc----ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCC
Confidence            7999999875444333445433    23577999998776654332  12222222211000   011236788999999


Q ss_pred             CEEEEEEecCCc--EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-CC--cEE
Q psy1242         349 RFLLACGFWDNS--FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-DC--TVL  423 (540)
Q Consensus       349 ~~llasgs~Dgs--v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-Dg--tV~  423 (540)
                      +.|+++++.|+.  |++||+.+++. ..+               ..|...+.+++|+|    ||++|++++. ++  .|.
T Consensus       235 ~~la~~~~~~g~~~i~~~d~~~~~~-~~l---------------~~~~~~~~~~~~sp----dg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          235 SKLAFALSKTGSLNLYVMDLASGQI-RQV---------------TDGRSNNTEPTWFP----DSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCE-EEC---------------CCCSSCEEEEEECT----TSSEEEEEECTTSSCEEE
T ss_pred             CEEEEEEecCCCceEEEEECCCCCE-EeC---------------cCCCCcccceEECC----CCCEEEEEECCCCCcEEE
Confidence            986667777665  99999998775 344               67888999999999    9999988886 55  566


Q ss_pred             EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCcEEEEecCCCCCCCceEE
Q psy1242         424 LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL---GPVLVHTTFGDLLRSLDPPSGFASPESV  500 (540)
Q Consensus       424 lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D---g~v~iw~~~g~~~~~l~~~~~~~~v~~l  500 (540)
                      +||+.+.            ....+..|...+.+++|+|+|++|++++.+   +.|.+|+..+.....+..+.   .+.++
T Consensus       295 ~~d~~~~------------~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~---~~~~~  359 (415)
T 2hqs_A          295 KVNINGG------------APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF---LDETP  359 (415)
T ss_dssp             EEETTSS------------CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS---SCEEE
T ss_pred             EEECCCC------------CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC---CcCCe
Confidence            6676542            234556677889999999999999888764   47888887443345565543   57999


Q ss_pred             EEeeCCCEEEEe-cCC---eEEEEecCCcEEEeee-cCCcceecC
Q psy1242         501 VMSREGVIVVNY-ERG---HIAAFTMNGNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       501 ~fspdg~~l~s~-~dg---~I~lw~~~g~~l~~~~-~~~~V~~va  540 (540)
                      +|+|+|+.|+++ .++   .|.+|+++|+.+..+. +.+.|.++|
T Consensus       360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~  404 (415)
T 2hqs_A          360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPA  404 (415)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEE
T ss_pred             EEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCc
Confidence            999999988874 333   7999999988887775 778887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=1e-17  Score=176.54  Aligned_cols=158  Identities=15%  Similarity=0.100  Sum_probs=126.7

Q ss_pred             EEEEEEecCCCEEEE---EEecCCcEEEEEccCC--------eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         339 HNCFVTTVDSRFLLA---CGFWDNSFRVFSTDNA--------RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       339 ~~~~~~spdg~~lla---sgs~Dgsv~iwd~~~g--------~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                      +.+++|+|+|++|++   +|+.|++|+|||+.++        +.+..+            ..+.+|.+.|++++|+|   
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~------------~~~~~h~~~V~~v~~~p---  159 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYH------------KLLKDAGGMVIDMKWNP---  159 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEE------------ECCCSGGGSEEEEEECS---
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeee------------eccCCCCCceEEEEECC---
Confidence            789999999997543   7889999999999765        221111            22368999999999999   


Q ss_pred             CC-CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEE
Q psy1242         408 TA-DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLR  486 (540)
Q Consensus       408 ~d-g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~  486 (540)
                       + +.+|++|+.||+|++||++..           ..+....+|...|.+++|+|+|++|++|+.||+|++|+..++...
T Consensus       160 -~~~~~las~s~Dg~v~iwD~~~~-----------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~  227 (434)
T 2oit_A          160 -TVPSMVAVCLADGSIAVLQVTET-----------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK  227 (434)
T ss_dssp             -SCTTEEEEEETTSCEEEEEESSS-----------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEE
T ss_pred             -CCCCEEEEEECCCeEEEEEcCCC-----------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccc
Confidence             6 889999999999999999863           344556679999999999999999999999999999988877777


Q ss_pred             EecCCCC-----CCCceEEEEeeCCCEEEEe--cCC------eEEEEecC
Q psy1242         487 SLDPPSG-----FASPESVVMSREGVIVVNY--ERG------HIAAFTMN  523 (540)
Q Consensus       487 ~l~~~~~-----~~~v~~l~fspdg~~l~s~--~dg------~I~lw~~~  523 (540)
                      .+..+..     ...|.+++|++++.++++.  .+|      .+++|++.
T Consensus       228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence            7765532     1257899999999988763  232      38999986

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.69  E-value=1.9e-15  Score=158.01  Aligned_cols=158  Identities=12%  Similarity=0.026  Sum_probs=121.2

Q ss_pred             EEEEEEEecCCCEEEEEEecCC---cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDN---SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dg---sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      .+.+++|+|||++ |++++.|+   .|++||+.+++.. .+               ..|.+.+.+++|+|    ||+.|+
T Consensus       180 ~v~~~~~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~l---------------~~~~~~~~~~~~sp----dg~~la  238 (415)
T 2hqs_A          180 PLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVR-QV---------------ASFPRHNGAPAFSP----DGSKLA  238 (415)
T ss_dssp             CEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-EE---------------ECCSSCEEEEEECT----TSSEEE
T ss_pred             cceeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-Ee---------------ecCCCcccCEEEcC----CCCEEE
Confidence            3788999999996 67777775   9999999988875 34               57888999999999    999887


Q ss_pred             -EEeCCCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCcEEEEe
Q psy1242         415 -SGSADCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LG--PVLVHTTFGDLLRSL  488 (540)
Q Consensus       415 -sgs~Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg--~v~iw~~~g~~~~~l  488 (540)
                       +++.|+.  |.+||+.+.            ....+.+|...+.+++|+|||+.|++++. ++  .|.+|+..+.....+
T Consensus       239 ~~~~~~g~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l  306 (415)
T 2hqs_A          239 FALSKTGSLNLYVMDLASG------------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI  306 (415)
T ss_dssp             EEECTTSSCEEEEEETTTC------------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred             EEEecCCCceEEEEECCCC------------CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE
Confidence             6776665  888887652            23677888899999999999999888886 55  455566644344555


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEEEee
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l~~~  530 (540)
                      ..+..  .+.+++|+|+|++|+++.    +..|.+|++++..+..+
T Consensus       307 ~~~~~--~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l  350 (415)
T 2hqs_A          307 TWEGS--QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL  350 (415)
T ss_dssp             CCSSS--EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred             ecCCC--cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence            55555  578999999999998743    25899999985444444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.68  E-value=1.2e-16  Score=168.23  Aligned_cols=183  Identities=10%  Similarity=0.010  Sum_probs=126.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee-eeeEEEeeccCcceEEEEeccCccCCCcEEE---
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT-SRIVQIIFGHYGVVTCLSRSECNITADCFIA---  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~-~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~---  414 (540)
                      +.++++++++.. +++|+.|+ ++||+............+...+. ...... ..|.+.|++++|+|    +|++|+   
T Consensus        39 ~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~sp----dg~~lav~~  111 (434)
T 2oit_A           39 SSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSC----DNLTLSACM  111 (434)
T ss_dssp             CBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECT----TSCEEEEEE
T ss_pred             ccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcC----CCCEEEEEE
Confidence            456778999985 67888787 99987642111000000000000 000011 24677899999999    999999   


Q ss_pred             -EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         415 -SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       415 -sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                       +|+.|++|+|||+................+..+.+|...|.+++|+|+ +.+|++++.||+|++|+. ++..+....+|
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~  191 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS  191 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence             888999999999865310000000001124566789999999999998 789999999999999976 56666566666


Q ss_pred             CCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEee
Q psy1242         492 SGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~~  530 (540)
                      ..  .|.+++|+|+|++|++| .||.|++||++++....+
T Consensus       192 ~~--~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~  229 (434)
T 2oit_A          192 TV--AVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVI  229 (434)
T ss_dssp             GG--CEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEE
T ss_pred             CC--ceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccc
Confidence            66  78999999999999985 689999999997766554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.66  E-value=1.4e-15  Score=165.80  Aligned_cols=232  Identities=11%  Similarity=0.042  Sum_probs=154.3

Q ss_pred             ceeEEEecCCCCCeeeecccceeeecCCcEEEEEccC-cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeec
Q psy1242         236 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANH-QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHP  314 (540)
Q Consensus       236 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~-D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~  314 (540)
                      ..+..+.|++++..                 +|+++. |+++++|++.++.......+..   .....+.||+| .++.+
T Consensus        22 ~~~~~~~~~~DG~~-----------------la~~s~~~g~~~lw~~~~g~~~~lt~~~~---~~~~~~~~spd-~~l~~   80 (582)
T 3o4h_A           22 VEKYSLQGVVDGDK-----------------LLVVGFSEGSVNAYLYDGGETVKLNREPI---NSVLDPHYGVG-RVILV   80 (582)
T ss_dssp             SCEEEEEEEETTTE-----------------EEEEEEETTEEEEEEEETTEEEECCSSCC---SEECEECTTCS-EEEEE
T ss_pred             cchheeecCCCCCe-----------------EEEEEccCCceeEEEEcCCCcEeeecccc---cccccccCCCC-eEEEE
Confidence            34667777777665                 777666 9999999986554444333331   11234668888 55554


Q ss_pred             cCC--CCCCcccc--cc--CC---CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeee
Q psy1242         315 TSN--NNAPVPKR--HL--GD---NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSR  385 (540)
Q Consensus       315 g~~--~~~~~~~~--~~--~~---~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~  385 (540)
                      ++.  .......+  ..  .+   .......  ....+|+|||+.++++.+.++.+.+||+.+++.....          
T Consensus        81 ~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~----------  148 (582)
T 3o4h_A           81 RDVSKGAEQHALFKVNTSRPGEEQRLEAVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA----------  148 (582)
T ss_dssp             EECSTTSCCEEEEEEETTSTTCCEECTTSCS--BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE----------
T ss_pred             eccCCCCcceEEEEEeccCCCccccccCCCC--ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee----------
Confidence            432  11111110  11  00   0000111  2245778898754444444555669999988765544          


Q ss_pred             eEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC
Q psy1242         386 IVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA  461 (540)
Q Consensus       386 ~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp  461 (540)
                           . +..  .+++|+|    ||++|++++.|    ..|.+||+.++           + ...+.+|...+..++|||
T Consensus       149 -----~-~~~--~~~~~sp----DG~~la~~~~~~~~~~~i~~~d~~~g-----------~-~~~l~~~~~~~~~~~~Sp  204 (582)
T 3o4h_A          149 -----R-LPG--FGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSG-----------G-LRVFDSGEGSFSSASISP  204 (582)
T ss_dssp             -----E-ESS--CEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTC-----------C-CEEECCSSCEEEEEEECT
T ss_pred             -----c-CCC--ceEEECC----CCCEEEEEEEcCCCCeEEEEEcCCCC-----------C-ceEeecCCCccccceECC
Confidence                 2 223  7899999    99999988877    78999997752           2 346788989999999999


Q ss_pred             CCCEEEEEeCCC--cEEEEeC-CCcEEEEecCCCCCCCceEEE--------EeeCCCEEEEe-cCCeEEEEecCCcEEE
Q psy1242         462 ELGLVVSGSQLG--PVLVHTT-FGDLLRSLDPPSGFASPESVV--------MSREGVIVVNY-ERGHIAAFTMNGNRLR  528 (540)
Q Consensus       462 dg~~lasgs~Dg--~v~iw~~-~g~~~~~l~~~~~~~~v~~l~--------fspdg~~l~s~-~dg~I~lw~~~g~~l~  528 (540)
                      ||+.|++++.+|  .|++|+. +++.. .+..+..  .+..++        |+|||.+++++ .++.+++|++ |+.+.
T Consensus       205 DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~  279 (582)
T 3o4h_A          205 GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK--DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVE  279 (582)
T ss_dssp             TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS--HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEEC
T ss_pred             CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc--ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeec
Confidence            999999888899  7788877 55555 6666655  456666        99999877774 6899999999 77654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=3.7e-14  Score=143.02  Aligned_cols=228  Identities=12%  Similarity=0.067  Sum_probs=155.8

Q ss_pred             cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCccccccCCC-----cCc--------ceeeE
Q psy1242         273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-----FSQ--------KLRVR  338 (540)
Q Consensus       273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~~~~-----~~~--------~~~v~  338 (540)
                      +++|.+||..+.+........    .....+.+++|+. +.+++.... ..........     +..        .....
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  142 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLWFGNTVNS-AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQ  142 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEEEEETTTT-EEEEEETTTCCEEEEEESCCCCCCSSCCCCE
T ss_pred             CccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEEEEecCCC-EEEEEeCCCCeeEEEEecCCCccccccCCCC
Confidence            789999999876644333222    1234577889886 444332211 1111111100     000        00112


Q ss_pred             EEEEEEecCCCEEEEEE-ecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACG-FWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasg-s~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ..+++++|+|+++++++ +.++.|.+||..+++.+..+               ..+...+.+++|+|    +|++|++++
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~---------------~~~~~~~~~~~~s~----dg~~l~~~~  203 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI---------------QNTGKMSTGLALDS----EGKRLYTTN  203 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE---------------CCCCTTCCCCEEET----TTTEEEEEC
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe---------------cCCCCccceEEECC----CCCEEEEEc
Confidence            56788999999866665 35889999999999988877               44555688999999    999999999


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEec----cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeC-CCcEEEEecCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLT----GHEQPVTSVAISAELGLVVSGSQ-LGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~----~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      .++.|.+||..+.           +.+..+.    ++...+.+++|+|+++.++.++. ++.|.+|+. +++.+..+..+
T Consensus       204 ~~~~i~~~d~~~~-----------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  272 (353)
T 3vgz_A          204 ADGELITIDTADN-----------KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP  272 (353)
T ss_dssp             TTSEEEEEETTTT-----------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred             CCCeEEEEECCCC-----------eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence            9999999998763           3444443    35667889999999997766654 588999976 78888877754


Q ss_pred             CCCCCceEEEEeeCCCEEEE-e-cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         492 SGFASPESVVMSREGVIVVN-Y-ERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      ..    ..++|+|+|+.++. . .++.|.+||+. ++.+..+.....+.++
T Consensus       273 ~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  319 (353)
T 3vgz_A          273 ES----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSL  319 (353)
T ss_dssp             SC----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             CC----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeE
Confidence            42    57999999996655 3 47999999997 7777666544444443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.65  E-value=3.7e-15  Score=145.42  Aligned_cols=233  Identities=12%  Similarity=-0.020  Sum_probs=154.2

Q ss_pred             EEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCcceeeEEE
Q psy1242         267 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQKLRVRHN  340 (540)
Q Consensus       267 lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~~~v~~~  340 (540)
                      ..+.+.|++|++||..++.......|.+.+    ..+.+++|+..++++++.  ....+.+..      .........+.
T Consensus        15 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~v----~~~~~spdg~~l~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (297)
T 2ojh_A           15 GPGGSMRSSIEIFNIRTRKMRVVWQTPELF----EAPNWSPDGKYLLLNSEG--LLYRLSLAGDPSPEKVDTGFATICNN   88 (297)
T ss_dssp             ---CCCCEEEEEEETTTTEEEEEEEESSCC----EEEEECTTSSEEEEEETT--EEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred             cCCCCcceeEEEEeCCCCceeeeccCCcce----EeeEECCCCCEEEEEcCC--eEEEEeCCCCCCceEecccccccccc
Confidence            335678999999999876655555554333    357899999877765421  222222211      01111112356


Q ss_pred             EEEEecCCCEEEEEEe--cCCcEEEEEc--cCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-E
Q psy1242         341 CFVTTVDSRFLLACGF--WDNSFRVFST--DNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-S  415 (540)
Q Consensus       341 ~~~~spdg~~llasgs--~Dgsv~iwd~--~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-s  415 (540)
                      +++|+|+|++ |++++  .++..+||.+  .+++ ...+               ..+ ..+.+++|+|    +|++|+ +
T Consensus        89 ~~~~spdg~~-l~~~~~~~~~~~~l~~~~~~~~~-~~~~---------------~~~-~~~~~~~~sp----dg~~l~~~  146 (297)
T 2ojh_A           89 DHGISPDGAL-YAISDKVEFGKSAIYLLPSTGGT-PRLM---------------TKN-LPSYWHGWSP----DGKSFTYC  146 (297)
T ss_dssp             CCEECTTSSE-EEEEECTTTSSCEEEEEETTCCC-CEEC---------------CSS-SSEEEEEECT----TSSEEEEE
T ss_pred             ceEECCCCCE-EEEEEeCCCCcceEEEEECCCCc-eEEe---------------ecC-CCccceEECC----CCCEEEEE
Confidence            7889999996 56666  3345555554  4444 3333               233 3488999999    898877 7


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCcEEEEecCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT--FGDLLRSLDPPS  492 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~--~g~~~~~l~~~~  492 (540)
                      ++.|+.++||+++...          .....+..|...+.+++|+|+++.++.++ .++.+.+|..  .+..+..+..+.
T Consensus       147 ~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  216 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDS----------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA  216 (297)
T ss_dssp             EEETTEEEEEEEETTT----------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred             ECCCCceEEEEEECCC----------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence            8889999999976422          23456777888999999999999887766 5899999843  566677777766


Q ss_pred             CCCCceEEEEeeCCCEEEEec-C-----------CeEEEEecCC-cE--EEee-ecCCcceec
Q psy1242         493 GFASPESVVMSREGVIVVNYE-R-----------GHIAAFTMNG-NR--LRHE-SHNDNLQKT  539 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~-d-----------g~I~lw~~~g-~~--l~~~-~~~~~V~~v  539 (540)
                      .  .+..++|+|+|++|++++ +           +.|.+|++++ +.  +... .|...|.++
T Consensus       217 ~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  277 (297)
T 2ojh_A          217 Y--GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP  277 (297)
T ss_dssp             E--EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC
T ss_pred             c--ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc
Confidence            5  678999999999888742 2           5699999984 33  3322 355666554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.1e-14  Score=139.98  Aligned_cols=218  Identities=14%  Similarity=0.034  Sum_probs=146.2

Q ss_pred             eeecCCcEEEEEccCcceEEEEcCCC-CCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCC-CCcccccc--CC---
Q psy1242         258 VTLHMPSVVTVTANHQFAINRWNPDY-AASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNN-APVPKRHL--GD---  329 (540)
Q Consensus       258 ~~~~~~~~~lvs~s~D~tv~~W~~~~-~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~-~~~~~~~~--~~---  329 (540)
                      +.+.+++..+++++ ++.|++|+..+ +...... .+.   ......+.|++|+..++.+.... .....+.+  ..   
T Consensus        47 ~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~  122 (297)
T 2ojh_A           47 PNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA---TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP  122 (297)
T ss_dssp             EEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred             eEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence            33444444466665 78999999977 5533322 221   12234578999998777654211 11111111  11   


Q ss_pred             -CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc
Q psy1242         330 -NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI  407 (540)
Q Consensus       330 -~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~  407 (540)
                       .+....  .+.+++|+|+|+.++++++.|+.++||+++. +.....+               ..|...+.+++|+|   
T Consensus       123 ~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~s~---  182 (297)
T 2ojh_A          123 RLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL---------------THGEGRNDGPDYSP---  182 (297)
T ss_dssp             EECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC---------------CCSSSCEEEEEECT---
T ss_pred             EEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc---------------ccCCCccccceECC---
Confidence             011111  1567789999998776888999999998642 2233344               56788899999999   


Q ss_pred             CCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-----------CcE
Q psy1242         408 TADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL-----------GPV  475 (540)
Q Consensus       408 ~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-----------g~v  475 (540)
                       +|+.|+.++ .++.++||+++..          ......+..|...+.+++|+|++++|++++.+           +.|
T Consensus       183 -dg~~l~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          183 -DGRWIYFNSSRTGQMQIWRVRVD----------GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             -TSSEEEEEECTTSSCEEEEEETT----------SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             -CCCEEEEEecCCCCccEEEECCC----------CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence             999887766 5999999998642          23456777888889999999999999888866           457


Q ss_pred             EEEeC-CCcE--EEEecCCCCCCCceEEEEeeCCCEEEEe
Q psy1242         476 LVHTT-FGDL--LRSLDPPSGFASPESVVMSREGVIVVNY  512 (540)
Q Consensus       476 ~iw~~-~g~~--~~~l~~~~~~~~v~~l~fspdg~~l~s~  512 (540)
                      .+|+. +++.  +..+..+..  .+..++|+|+|+.|+++
T Consensus       252 ~~~d~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~  289 (297)
T 2ojh_A          252 QLMDMDGGNVETLFDLFGGQG--TMNSPNWSPDGDEFAYV  289 (297)
T ss_dssp             EEEETTSCSCEEEEEEEESTT--TSCSCCBCTTSSEEEEE
T ss_pred             EEEecCCCCceeeeccCCCCc--ccccceECCCCCEEEEE
Confidence            88876 4443  344445565  67899999999988874

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.62  E-value=4.8e-14  Score=141.22  Aligned_cols=227  Identities=11%  Similarity=0.099  Sum_probs=143.1

Q ss_pred             cEEEEEccCcceEEEEcCCC-CC--cccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC---CCcCcce--
Q psy1242         264 SVVTVTANHQFAINRWNPDY-AA--SIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG---DNFSQKL--  335 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~-~~--~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~---~~~~~~~--  335 (540)
                      ..++++++.|+.|++|+... +.  ......+.    .....+.+++|+..+++++........+.+.   +......  
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVP----GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS----SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecC----CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence            45577778899999999853 21  11222232    2234578999997555443322222222222   0100000  


Q ss_pred             --eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCC---eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         336 --RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNA---RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       336 --~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g---~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                        .....+++|+|+|+++++++..++.|.+||+.++   +.+..+               .. ...+.+++|+|    +|
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~~-~~~~~~~~~s~----dg  140 (343)
T 1ri6_A           81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV---------------EG-LDGCHSANISP----DN  140 (343)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE---------------CC-CTTBCCCEECT----TS
T ss_pred             ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc---------------cC-CCCceEEEECC----CC
Confidence              0135678899999987666667899999999533   333333               33 34588999999    99


Q ss_pred             cEEEEEe-CCCcEEEEEcCC-CcccccCCCCCCcceE--Eecc-CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeC---C
Q psy1242         411 CFIASGS-ADCTVLLWHWNA-RTQSIVGETDTPTPRA--TLTG-HEQPVTSVAISAELGLVVSG-SQLGPVLVHTT---F  481 (540)
Q Consensus       411 ~~l~sgs-~DgtV~lWd~~~-~~~~~~~~~~~~~~~~--~l~~-h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~---~  481 (540)
                      ++|++++ .++.|.+||+.. ...         ....  .+.. ....+.+++|+|++++++.+ ..++.+.+|+.   +
T Consensus       141 ~~l~~~~~~~~~v~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~  211 (343)
T 1ri6_A          141 RTLWVPALKQDRICLFTVSDDGHL---------VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH  211 (343)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCE---------EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred             CEEEEecCCCCEEEEEEecCCCce---------eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            8888877 899999999875 211         1111  2222 34578899999999976554 48899999975   3


Q ss_pred             CcE--EEEecC---C-CCCCCceEEEEeeCCCEEEE-e-cCCeEEEEecC
Q psy1242         482 GDL--LRSLDP---P-SGFASPESVVMSREGVIVVN-Y-ERGHIAAFTMN  523 (540)
Q Consensus       482 g~~--~~~l~~---~-~~~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~  523 (540)
                      ++.  ...+..   . .....+..++|+|+|++|+. . .++.|.+|+++
T Consensus       212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            432  233321   1 11124568999999998774 3 57999999987

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.61  E-value=6e-14  Score=140.13  Aligned_cols=237  Identities=10%  Similarity=-0.027  Sum_probs=152.6

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCccccccCCC-cCcce--------
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-FSQKL--------  335 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~~~~-~~~~~--------  335 (540)
                      .+++++.+++|++||..+++.......... ......+.+++|+. +.+++... .......+... ....+        
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~   80 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKS-ESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTT-TEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCC-CCCccceEEcCCCCEEEEEeCCC-CeEEEEECCCCCeEeeEEcCCcccc
Confidence            478889999999999987654433322210 00234678999985 44443222 11111111110 00000        


Q ss_pred             eeEEEEEEEecCCCEEEEEEe-----------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         336 RVRHNCFVTTVDSRFLLACGF-----------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs-----------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      .....+++++|+|++++++..           .++.|.+||+.+++.+..+               .. ...+.+++|+|
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---------------~~-~~~~~~~~~s~  144 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---------------EA-PRQITMLAWAR  144 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---------------EC-CSSCCCEEECT
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE---------------eC-CCCcceeEECC
Confidence            112456788999997544431           4799999999998887776               32 34578899999


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCccccc-CCCC--C-------Cc--------------------------------
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIV-GETD--T-------PT--------------------------------  442 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~-~~~~--~-------~~--------------------------------  442 (540)
                          +|++|+++  ++.|.+||+.+...... ....  .       +.                                
T Consensus       145 ----dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (337)
T 1pby_B          145 ----DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR  218 (337)
T ss_dssp             ----TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred             ----CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccc
Confidence                99988887  68999999875432100 0000  0       00                                


Q ss_pred             -ceE------------EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCE
Q psy1242         443 -PRA------------TLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVI  508 (540)
Q Consensus       443 -~~~------------~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~  508 (540)
                       .+.            .+..+...+.+++|+|++++++++  ++.|.+|+. +++.+..+..+.   .+.+++|+|+|++
T Consensus       219 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~  293 (337)
T 1pby_B          219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTSCE
T ss_pred             cceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEECCCCCE
Confidence             001            122334456789999999998888  789999976 677777776543   4689999999997


Q ss_pred             EEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         509 VVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       509 l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      |++ +.++.|.+|++. ++.+..+.
T Consensus       294 l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          294 VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCcEEEEECcCCcEEEEEE
Confidence            776 457999999987 77777765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.59  E-value=1.1e-13  Score=139.14  Aligned_cols=243  Identities=9%  Similarity=0.008  Sum_probs=149.5

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCe-eeccCCCCCCccccccCCC-cCcce-
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPIL-THPTSNNNAPVPKRHLGDN-FSQKL-  335 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l-~~~g~~~~~~~~~~~~~~~-~~~~~-  335 (540)
                      .+.....++++++.+++|++||..+++.........  ......+.+++|+.. .+++... .......+... ..... 
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~-~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNHY-GDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEE
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC--CCCCceeEECCCCCEEEEEeCCC-CcEEEEeCCCCcEEEEEE
Confidence            345566779999999999999998765433222211  012345778899864 3333211 11111111110 00000 


Q ss_pred             --------eeEEEEEEEecCCCEEEEEEec------------CCcEEEEEccCCeEE---EEEecccceeeeeeEEEeec
Q psy1242         336 --------RVRHNCFVTTVDSRFLLACGFW------------DNSFRVFSTDNARIV---QIIFGHYGVVTSRIVQIIFG  392 (540)
Q Consensus       336 --------~v~~~~~~~spdg~~llasgs~------------Dgsv~iwd~~~g~~~---~~l~~~~~~v~~~~~~~l~~  392 (540)
                              .....+++++|||+++ ++++.            ++.|.+||+.+++..   ..+               . 
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------~-  145 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEV-YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF---------------P-  145 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE---------------E-
T ss_pred             cccccccccccccceEECCCCCEE-EEEcccccccccccccCCCeEEEEECCCccccceeeec---------------c-
Confidence                    1114567889999975 55544            489999999885433   222               2 


Q ss_pred             cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCccccc-CCCCCC-----------------------cc-----
Q psy1242         393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIV-GETDTP-----------------------TP-----  443 (540)
Q Consensus       393 h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~-~~~~~~-----------------------~~-----  443 (540)
                      +...+.+++|+|    +|+ ++.++.  .|.+||..+...... ......                       .+     
T Consensus       146 ~~~~~~~~~~s~----dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (349)
T 1jmx_B          146 MPRQVYLMRAAD----DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  218 (349)
T ss_dssp             CCSSCCCEEECT----TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             CCCcccceeECC----CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence            334688999999    898 555544  499999865432110 000000                       00     


Q ss_pred             ----------------------------eEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC
Q psy1242         444 ----------------------------RATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG  493 (540)
Q Consensus       444 ----------------------------~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~  493 (540)
                                                  ...+..+...+.+++++| ++++++++  ++.|.+|+. +++.+..+..+. 
T Consensus       219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-  295 (349)
T 1jmx_B          219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-  295 (349)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-
T ss_pred             cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-
Confidence                                        000011223567888999 99998888  889999976 778777776543 


Q ss_pred             CCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecC
Q psy1242         494 FASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHN  533 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~  533 (540)
                        .+.+++|+|+|+.|++ +.++.|.+||++ ++.+..+...
T Consensus       296 --~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          296 --TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             --CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             --CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence              4679999999987776 457999999997 7777777533

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.59  E-value=2.3e-13  Score=136.23  Aligned_cols=236  Identities=10%  Similarity=0.049  Sum_probs=140.8

Q ss_pred             eecCCcEEEEEccC-cceEEEEcCC--CCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC-------
Q psy1242         259 TLHMPSVVTVTANH-QFAINRWNPD--YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-------  328 (540)
Q Consensus       259 ~~~~~~~~lvs~s~-D~tv~~W~~~--~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~-------  328 (540)
                      .+.+++..+++++. ++.|++|+..  ++..........  ......+.+++|+..+.+++........+.+.       
T Consensus        44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~  121 (343)
T 1ri6_A           44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV  121 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             EECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc--CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc
Confidence            33444433555554 4999999986  333221111110  11334578899997554332222222222221       


Q ss_pred             -CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEee-ccCcceEEEEeccC
Q psy1242         329 -DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIF-GHYGVVTCLSRSEC  405 (540)
Q Consensus       329 -~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~-~h~~~Vt~l~~sp~  405 (540)
                       ......  ..+.+++|+|+|+++++++..++.|++||+.+ ++.......           .+. .....+.+++|+| 
T Consensus       122 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~p-  187 (343)
T 1ri6_A          122 VDVVEGL--DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA-----------EVTTVEGAGPRHMVFHP-  187 (343)
T ss_dssp             EEEECCC--TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-----------EEECSTTCCEEEEEECT-
T ss_pred             cccccCC--CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc-----------ccccCCCCCcceEEECC-
Confidence             000000  11567788999998666555899999999987 654321100           002 2335788999999 


Q ss_pred             ccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEec----cC--CCCEEEEEEcCCCCEEE-EEeCCCcEEE
Q psy1242         406 NITADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLT----GH--EQPVTSVAISAELGLVV-SGSQLGPVLV  477 (540)
Q Consensus       406 ~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~----~h--~~~V~~v~~spdg~~la-sgs~Dg~v~i  477 (540)
                         +|++++.++ .++.|.+|+++...+.       ......+.    ++  ...+.+++|+|+++.++ ++..++.|.+
T Consensus       188 ---dg~~l~~~~~~~~~i~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v  257 (343)
T 1ri6_A          188 ---NEQYAYCVNELNSSVDVWELKDPHGN-------IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  257 (343)
T ss_dssp             ---TSSEEEEEETTTTEEEEEESSCTTSC-------CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ---CCCEEEEEeCCCCEEEEEEecCCCCc-------EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence               898775554 8999999998642211       11122222    11  34677899999998776 5557899999


Q ss_pred             EeCC---C--cEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242         478 HTTF---G--DLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       478 w~~~---g--~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~  523 (540)
                      |+..   +  +.+..+..+.   .+.+++|+|+|++|+++  .++.|.+|+++
T Consensus       258 ~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          258 FSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            9653   2  3444554433   36899999999988775  46999999654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.59  E-value=3.9e-14  Score=153.36  Aligned_cols=233  Identities=6%  Similarity=-0.006  Sum_probs=161.0

Q ss_pred             eeeecCCcEEEEEccCcceEEEEcC--CCCCcccCCCCcCCCCCCCCCccccC----CCCeeeccCCCCCCccccc----
Q psy1242         257 YVTLHMPSVVTVTANHQFAINRWNP--DYAASIQSPSYAETPGSPPGNLPLTL----DPILTHPTSNNNAPVPKRH----  326 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D~tv~~W~~--~~~~~~~~~~~~~~v~~~~~~~~~s~----D~~l~~~g~~~~~~~~~~~----  326 (540)
                      .+.+.+++..+++++.|++|++||.  .+.+......+    +.....+.+++    |+..+.+++..........    
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            3457777878888999999999999  55443322222    22234578899    9977766542111111111    


Q ss_pred             -----cCCC---cCc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE--EEecccceeeeeeEEEeecc
Q psy1242         327 -----LGDN---FSQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ--IIFGHYGVVTSRIVQIIFGH  393 (540)
Q Consensus       327 -----~~~~---~~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~--~l~~~~~~v~~~~~~~l~~h  393 (540)
                           +...   .+.   +..-++..++++|++..++++...+++|.+||..+++.+.  .+                .+
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i----------------~~  322 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI----------------GA  322 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE----------------EC
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe----------------cc
Confidence                 1100   000   0011366788899999889999999999999998876543  32                35


Q ss_pred             CcceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEecc----CCCCEEEEEEcCC-CCEEE
Q psy1242         394 YGVVTCLSRSECNITADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATLTG----HEQPVTSVAISAE-LGLVV  467 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~v~~spd-g~~la  467 (540)
                      ...+..++|+|    +|+++++++ .+++|.+||..+           ++++..+..    |.+....+ ++|+ +..++
T Consensus       323 ~~~~~~~~~sp----dg~~l~va~~~~~~v~v~D~~t-----------g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~  386 (543)
T 1nir_A          323 APFLHDGGWDS----SHRYFMTAANNSNKVAVIDSKD-----------RRLSALVDVGKTPHPGRGANF-VHPKYGPVWS  386 (543)
T ss_dssp             CSSCCCEEECT----TSCEEEEEEGGGTEEEEEETTT-----------TEEEEEEECSSSBCCTTCEEE-EETTTEEEEE
T ss_pred             CcCccCceECC----CCCEEEEEecCCCeEEEEECCC-----------CeEEEeeccCCCCCCCCCccc-CCCCCccEEE
Confidence            56688899999    999876554 689999999876           345666653    65443333 4777 66677


Q ss_pred             EEe-CCCcEEEEeC-C-------CcEEEEecCCCCCCCceEEEEeeCCCEEEEec--------CCeEEEEecC-CcEE
Q psy1242         468 SGS-QLGPVLVHTT-F-------GDLLRSLDPPSGFASPESVVMSREGVIVVNYE--------RGHIAAFTMN-GNRL  527 (540)
Q Consensus       468 sgs-~Dg~v~iw~~-~-------g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~--------dg~I~lw~~~-g~~l  527 (540)
                      +++ .|++|.+|+. +       +++++++..+.+  .+..++++|+|+.|+++.        +++|.+||++ ++.+
T Consensus       387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            776 6899999965 4       789999998876  568899999999999965        6799999987 4433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.59  E-value=2.4e-13  Score=147.19  Aligned_cols=251  Identities=12%  Similarity=0.111  Sum_probs=161.7

Q ss_pred             CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc--CCC-cCcce--e
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL--GDN-FSQKL--R  336 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~--~~~-~~~~~--~  336 (540)
                      ++..++++++.|++|.+||..+++........    .....+.+++|+..+.+++.+ .....+.+  ... ....+  .
T Consensus       147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g----~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g  221 (543)
T 1nir_A          147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG----YAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG  221 (543)
T ss_dssp             GGGEEEEEEGGGTEEEEEETTTCCEEEEEECS----TTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred             CCCEEEEEEcCCCeEEEEECCCceEEEEEecC----cccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC
Confidence            34567899999999999999876654333211    112356799999777766544 33333333  110 00011  1


Q ss_pred             eEEEEEEEec----CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCC-
Q psy1242         337 VRHNCFVTTV----DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITAD-  410 (540)
Q Consensus       337 v~~~~~~~sp----dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg-  410 (540)
                      .....++|+|    ||++++++...+++|.|||..+++++..+..+...+...     .-|. ..+.++.++|    ++ 
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~-----~~~~~~~v~~i~~s~----~~~  292 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ-----TYHPEPRVAAIIASH----EHP  292 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC-----CEESCCCEEEEEECS----SSS
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcc-----ccccCCceEEEEECC----CCC
Confidence            1357888999    999866666679999999999999998884321100000     0133 3789999999    55 


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeC-CCcEEEEe
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~-~g~~~~~l  488 (540)
                      .++++...+++|.+||......         ..+..+ .+...+.+++|+|+|++++++ ..+++|.+|+. +++++..+
T Consensus       293 ~~~vs~~~~g~i~vvd~~~~~~---------l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i  362 (543)
T 1nir_A          293 EFIVNVKETGKVLLVNYKDIDN---------LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  362 (543)
T ss_dssp             EEEEEETTTTEEEEEECTTSSS---------CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEEecCCCc---------ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEee
Confidence            5667778899999999875321         112233 356678889999999976655 46889999976 88888888


Q ss_pred             cCCCCCCCceEEE-EeeC-CCEEEEe--cCCeEEEEecC--------CcEEEeee-cCCcc
Q psy1242         489 DPPSGFASPESVV-MSRE-GVIVVNY--ERGHIAAFTMN--------GNRLRHES-HNDNL  536 (540)
Q Consensus       489 ~~~~~~~~v~~l~-fspd-g~~l~s~--~dg~I~lw~~~--------g~~l~~~~-~~~~V  536 (540)
                      .......+-..+. ++|+ |.+++++  .+++|.+|+++        ++.+.++. +.+.+
T Consensus       363 ~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~  423 (543)
T 1nir_A          363 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS  423 (543)
T ss_dssp             ECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred             ccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc
Confidence            7522100101233 4677 6666665  47999999986        46777776 44443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.58  E-value=3.1e-13  Score=135.30  Aligned_cols=228  Identities=11%  Similarity=0.043  Sum_probs=147.1

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCC-eeeccCCCCCCccccccCCC-c-Cccee--e
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPI-LTHPTSNNNAPVPKRHLGDN-F-SQKLR--V  337 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~-l~~~g~~~~~~~~~~~~~~~-~-~~~~~--v  337 (540)
                      ...++++++.+++|++||..+++........   .... .+.+++|+. +.+++.... ......+... . .....  .
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~-~~~~s~dg~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~   83 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLG---YDFV-DTAITSDCSNVVVTSDFCQ-TLVQIETQLEPPKVVAIQEGQ   83 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECC---CCEE-EEEECSSSCEEEEEESTTC-EEEEEECSSSSCEEEEEEECS
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEcc---CCcc-eEEEcCCCCEEEEEeCCCC-eEEEEECCCCceeEEecccCC
Confidence            4556889999999999999876643332211   1122 678899997 444432222 2222221111 0 00000  0


Q ss_pred             EEEE-EEEecCCCEEEEEEecC-C--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 RHNC-FVTTVDSRFLLACGFWD-N--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ~~~~-~~~spdg~~llasgs~D-g--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      .... ++++|+|++++ ++..+ +  .|.+||+.+++.+..+               .. .....+++|+|    +|++|
T Consensus        84 ~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~---------------~~-~~~~~~~~~sp----dg~~l  142 (331)
T 3u4y_A           84 SSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTI---------------PI-PYDAVGIAISP----NGNGL  142 (331)
T ss_dssp             SCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEE---------------EC-CTTEEEEEECT----TSSCE
T ss_pred             CCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEE---------------EC-CCCccceEECC----CCCEE
Confidence            1233 78899999754 55555 3  8999999999888776               33 34568999999    88755


Q ss_pred             E-EEeCCCc-EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeC-CCcE---EE
Q psy1242         414 A-SGSADCT-VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTT-FGDL---LR  486 (540)
Q Consensus       414 ~-sgs~Dgt-V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~-~g~~---~~  486 (540)
                      + ++..++. |.+|++.......      ......+ .......+++|+|+|+++ +++..++.|.+|+. +++.   +.
T Consensus       143 ~~~~~~~~~~i~~~~~~~~g~~~------~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~  215 (331)
T 3u4y_A          143 ILIDRSSANTVRRFKIDADGVLF------DTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLN  215 (331)
T ss_dssp             EEEEETTTTEEEEEEECTTCCEE------EEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred             EEEecCCCceEEEEEECCCCcEe------ecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceee
Confidence            4 4556688 9999987421100      0001222 344568999999999955 55557889999976 6777   77


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcE
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNR  526 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~  526 (540)
                      .+..+.   .+..++|+|+|++|+.+  .++.|.+|++. |+.
T Consensus       216 ~~~~~~---~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          216 AVGTNN---LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEECSS---CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred             eccCCC---CCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence            776543   56899999999977654  36789999988 444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.57  E-value=3.5e-13  Score=137.19  Aligned_cols=176  Identities=14%  Similarity=0.104  Sum_probs=118.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCe-------EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR-------IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~-------~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      ..+++|+|+|+++++++..++.|++|++....       ....-.         .......+...+.+++|+|    +|+
T Consensus       157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~sp----dg~  223 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT---------PEAFKVAPGSGPRHLIFNS----DGK  223 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE---------EEEEECCTTCCEEEEEECT----TSS
T ss_pred             ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc---------ccceecCCCCCCeEEEEcC----CCC
Confidence            46789999999877777778999999887543       211100         0000023445678999999    999


Q ss_pred             EEEEEe-CCCcEEEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEeC---CC
Q psy1242         412 FIASGS-ADCTVLLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAELGLVVSGSQL--GPVLVHTT---FG  482 (540)
Q Consensus       412 ~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spdg~~lasgs~D--g~v~iw~~---~g  482 (540)
                      ++++++ .+++|.+|++.....         ..+..+   ..+.....+++|+|||++|+++..+  +.|.+|+.   +|
T Consensus       224 ~l~v~~~~~~~v~v~~~~~g~~---------~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g  294 (361)
T 3scy_A          224 FAYLINEIGGTVIAFRYADGML---------DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG  294 (361)
T ss_dssp             EEEEEETTTCEEEEEEEETTEE---------EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred             EEEEEcCCCCeEEEEEecCCce---------EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC
Confidence            887777 699999999874321         122222   3344567899999999988666654  88999854   45


Q ss_pred             c--EEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC---CcEEEeee--cCCcceec
Q psy1242         483 D--LLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN---GNRLRHES--HNDNLQKT  539 (540)
Q Consensus       483 ~--~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~---g~~l~~~~--~~~~V~~v  539 (540)
                      +  .+..+.. ..  .+..++|+|+|++|+++  .++.|.+|.++   |++.....  +-..+.||
T Consensus       295 ~~~~~~~~~~-g~--~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v  357 (361)
T 3scy_A          295 TLTKVGYQLT-GI--HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCL  357 (361)
T ss_dssp             CEEEEEEEEC-SS--CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEE
T ss_pred             cEEEeeEecC-CC--CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEE
Confidence            5  3445544 33  57899999999988875  46889997654   55544331  34456665

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.56  E-value=5.5e-13  Score=133.48  Aligned_cols=237  Identities=9%  Similarity=0.024  Sum_probs=148.5

Q ss_pred             EEEEccCcceEEEEcCCCCCc-ccCCCCcCCCCCCCCC-ccccCCCCeeeccCCCCC--CccccccCCCc-Ccce--eeE
Q psy1242         266 VTVTANHQFAINRWNPDYAAS-IQSPSYAETPGSPPGN-LPLTLDPILTHPTSNNNA--PVPKRHLGDNF-SQKL--RVR  338 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~-~~~~~~~~~v~~~~~~-~~~s~D~~l~~~g~~~~~--~~~~~~~~~~~-~~~~--~v~  338 (540)
                      +++++..+..|.+||..++.. .......    ..... +.+++|+..++++.....  ....+.+.... ....  ...
T Consensus        54 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  129 (331)
T 3u4y_A           54 VVVTSDFCQTLVQIETQLEPPKVVAIQEG----QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD  129 (331)
T ss_dssp             EEEEESTTCEEEEEECSSSSCEEEEEEEC----SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT
T ss_pred             EEEEeCCCCeEEEEECCCCceeEEecccC----CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC
Confidence            455666688999999987654 3222222    12223 789999986665433322  22222221110 0000  112


Q ss_pred             EEEEEEecCCCEEEEEEecCCc-EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-E
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNS-FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-G  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgs-v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-g  416 (540)
                      ..+++|+|||+++++++..++. |.+|++.....+....          ... ......+.+++|+|    +|++++. +
T Consensus       130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~----------~~~-~~~~~~~~~~~~sp----dg~~l~v~~  194 (331)
T 3u4y_A          130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG----------QEF-ISGGTRPFNITFTP----DGNFAFVAN  194 (331)
T ss_dssp             EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE----------EEE-ECSSSSEEEEEECT----TSSEEEEEE
T ss_pred             ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC----------Ccc-ccCCCCccceEECC----CCCEEEEEe
Confidence            4788999999987788787788 9999998644332220          001 13345578999999    9986654 5


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC-CCcE--EEEecCC-
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT-FGDL--LRSLDPP-  491 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~-~g~~--~~~l~~~-  491 (540)
                      ..++.|.+||+.+...        .+.+..+..+ ..+.+++|+|+|++++.++ .++.|.+|+. +++.  +..+... 
T Consensus       195 ~~~~~v~v~d~~~~~~--------~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~  265 (331)
T 3u4y_A          195 LIGNSIGILETQNPEN--------ITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL  265 (331)
T ss_dssp             TTTTEEEEEECSSTTS--------CEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred             CCCCeEEEEECCCCcc--------cceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence            5689999999875321        1115555543 5678899999999766554 5778888876 5665  4443322 


Q ss_pred             ---CCC-CCceEEEEeeCCCEEEE-e-cCCeEEEEecCCcEEEee
Q psy1242         492 ---SGF-ASPESVVMSREGVIVVN-Y-ERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       492 ---~~~-~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~g~~l~~~  530 (540)
                         ... .....++|+|+|++|+. + .++.|.+|+++++.+...
T Consensus       266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          266 LIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYV  310 (331)
T ss_dssp             CCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             ccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence               110 01245899999998765 3 457999999998776655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.55  E-value=7.6e-14  Score=156.07  Aligned_cols=253  Identities=9%  Similarity=-0.073  Sum_probs=150.2

Q ss_pred             CcEEEEEccC-cc-----eEEEEcCCCCCcccCCCCcCCCC---------------------CCCCCccccCCCCeeecc
Q psy1242         263 PSVVTVTANH-QF-----AINRWNPDYAASIQSPSYAETPG---------------------SPPGNLPLTLDPILTHPT  315 (540)
Q Consensus       263 ~~~~lvs~s~-D~-----tv~~W~~~~~~~~~~~~~~~~v~---------------------~~~~~~~~s~D~~l~~~g  315 (540)
                      ++..+++++. |+     +|++||..++.......+.....                     .....+.||+|+..++.+
T Consensus        47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~  126 (741)
T 2ecf_A           47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP  126 (741)
T ss_dssp             TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred             CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence            3333777777 77     89999998766433322211100                     113467899999876655


Q ss_pred             CCCCCCccccccCCC---cCc---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeee-EE
Q psy1242         316 SNNNAPVPKRHLGDN---FSQ---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRI-VQ  388 (540)
Q Consensus       316 ~~~~~~~~~~~~~~~---~~~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~-~~  388 (540)
                      +.  .....+.+...   ...   .....+.+++|||||++ |+.++ ++.|++||+.+++.......+...+.... ..
T Consensus       127 ~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~  202 (741)
T 2ecf_A          127 LG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF-VSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEF  202 (741)
T ss_dssp             ET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE-EEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCH
T ss_pred             eC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCE-EEEEe-CCcEEEEecCCCCEEEeccCCccceeccccce
Confidence            32  11111111111   000   01123678889999997 56665 67999999998876654421111000000 00


Q ss_pred             EeeccCcceEEEEeccCccCCCcEEEEEeCCC---------------------------------cEEEEEcCC-Ccccc
Q psy1242         389 IIFGHYGVVTCLSRSECNITADCFIASGSADC---------------------------------TVLLWHWNA-RTQSI  434 (540)
Q Consensus       389 ~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg---------------------------------tV~lWd~~~-~~~~~  434 (540)
                      ......+.+.+++|||    ||++|++++.|+                                 .|.+||+.+ ..   
T Consensus       203 v~~~~~~~~~~~~~Sp----Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~---  275 (741)
T 2ecf_A          203 VADEEMDRHTGYWWAP----DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ---  275 (741)
T ss_dssp             HHHHHSCCCCSEEECT----TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC---
T ss_pred             eeeeccccccceEECC----CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc---
Confidence            0000011257899999    999999998765                                 777888754 32   


Q ss_pred             cCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEeC-CCcEEEEecCCCC-CC-CceEEEEee
Q psy1242         435 VGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQ-----LGPVLVHTT-FGDLLRSLDPPSG-FA-SPESVVMSR  504 (540)
Q Consensus       435 ~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~-----Dg~v~iw~~-~g~~~~~l~~~~~-~~-~v~~l~fsp  504 (540)
                              .....  ..|...+.+++| |||+.|++++.     +..|++|+. +++....+..+.. +. .+..++|+|
T Consensus       276 --------~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          276 --------TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             --------CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             --------eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence                    12222  257788999999 99999887664     456788876 6776666554432 11 346899999


Q ss_pred             CCCEEEEe-cCCeEEEEe--cCCcEEEeee-cCCcc
Q psy1242         505 EGVIVVNY-ERGHIAAFT--MNGNRLRHES-HNDNL  536 (540)
Q Consensus       505 dg~~l~s~-~dg~I~lw~--~~g~~l~~~~-~~~~V  536 (540)
                      ||++++++ .+|.+.+|.  .+|+ +..+. ++..|
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v  381 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSV  381 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCE
T ss_pred             CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEE
Confidence            99987775 456666654  4566 55443 44444

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.55  E-value=8.6e-13  Score=133.37  Aligned_cols=238  Identities=12%  Similarity=0.147  Sum_probs=145.2

Q ss_pred             eeecCCcEEEEEcc--CcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC--CcCc
Q psy1242         258 VTLHMPSVVTVTAN--HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD--NFSQ  333 (540)
Q Consensus       258 ~~~~~~~~~lvs~s--~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~--~~~~  333 (540)
                      +.+.+++.+.+++.  .++.|.+|+..++......... ........+.+++|+..+.+++........+.+..  ....
T Consensus        45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A           45 LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL  123 (347)
T ss_dssp             EEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             EEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence            34445554343332  3789999998654321111100 01223345788999975554432222222222211  0000


Q ss_pred             c--------------eeeEEEEEEEecCCCEEEEEEecCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEeec-cCcce
Q psy1242         334 K--------------LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIFG-HYGVV  397 (540)
Q Consensus       334 ~--------------~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~~-h~~~V  397 (540)
                      .              ....+.+++|+|||+ +++++..++.|++|++. +++.....             .+.. ....+
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~-------------~~~~~~g~~p  189 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQS-------------VLTMEAGFGP  189 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEE-------------EEECCTTCCE
T ss_pred             cceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEee-------------eEEcCCCCCC
Confidence            0              001256789999999 78888889999999998 55543221             0012 22367


Q ss_pred             EEEEeccCccCCCcEEEE-EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC------CCEEEEEEcCCCCEE-EEE
Q psy1242         398 TCLSRSECNITADCFIAS-GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE------QPVTSVAISAELGLV-VSG  469 (540)
Q Consensus       398 t~l~~sp~~~~dg~~l~s-gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~------~~V~~v~~spdg~~l-asg  469 (540)
                      ..++|+|    ||++|++ +..++.|.+|+++...+.       ...+..+....      ..+.+++|+|+|++| +++
T Consensus       190 ~~~~~sp----dg~~l~v~~~~~~~v~v~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          190 RHLVFSP----DGQYAFLAGELSSQIASLKYDTQTGA-------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             EEEEECT----TSSEEEEEETTTTEEEEEEEETTTTE-------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred             ceEEECC----CCCEEEEEeCCCCEEEEEEecCCCCc-------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence            7899999    9986655 567899999998752221       11223333222      458899999999976 566


Q ss_pred             eCCCcEEEEeC--CC--cEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242         470 SQLGPVLVHTT--FG--DLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       470 s~Dg~v~iw~~--~g--~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~  523 (540)
                      ..++.|.+|+.  +|  +.+..+..+..  .+..++|+|+|++|+++  .++.|.+|+++
T Consensus       259 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          259 RGYNTLAVFAVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             ETTTEEEEEEECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEEECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            67899999965  33  44556655544  57899999999988774  35899999553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.54  E-value=1.3e-13  Score=153.36  Aligned_cols=229  Identities=11%  Similarity=0.044  Sum_probs=147.9

Q ss_pred             cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC-----C------cCcceee----
Q psy1242         273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-----N------FSQKLRV----  337 (540)
Q Consensus       273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~-----~------~~~~~~v----  337 (540)
                      ++++++||..++.......+.+    ....+.||+||..++.+.+  .....+.+..     .      ......+    
T Consensus       100 ~~~i~~~d~~~~~~~~l~~~~~----~~~~~~~SpdG~~la~~~~--~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~  173 (706)
T 2z3z_A          100 QGGLVGFDMLARKVTYLFDTNE----ETASLDFSPVGDRVAYVRN--HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ  173 (706)
T ss_dssp             TTEEEEEETTTTEEEEEECCTT----CCTTCEECTTSSEEEEEET--TEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred             CCEEEEEECCCCceEEccCCcc----cccCCcCCCCCCEEEEEEC--CeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence            4899999997765443333332    2345789999976665422  1111111111     0      0000001    


Q ss_pred             --------EEEEEEEecCCCEEEEEEe---------------------------------cCCcEEEEEccCCeEEEEEe
Q psy1242         338 --------RHNCFVTTVDSRFLLACGF---------------------------------WDNSFRVFSTDNARIVQIIF  376 (540)
Q Consensus       338 --------~~~~~~~spdg~~llasgs---------------------------------~Dgsv~iwd~~~g~~~~~l~  376 (540)
                              .+.+++|||||++| ++++                                 .+..|++||+.+++......
T Consensus       174 ~~~~ee~~~~~~~~~SpDg~~l-a~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~  252 (706)
T 2z3z_A          174 AVHQREFGIEKGTFWSPKGSCL-AFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT  252 (706)
T ss_dssp             CCGGGCTTCCCSEEECTTSSEE-EEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred             chhhhhcCCCceEEECCCCCEE-EEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence                    13678899999974 5555                                 34679999999887654331


Q ss_pred             cccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC-----cEEEEEcCCCcccccCCCCCCcceEEec--c
Q psy1242         377 GHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC-----TVLLWHWNARTQSIVGETDTPTPRATLT--G  449 (540)
Q Consensus       377 ~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg-----tV~lWd~~~~~~~~~~~~~~~~~~~~l~--~  449 (540)
                      .             ..|...+.+++|+|    ||++|++++.|+     +|.+||+.++.           ....+.  .
T Consensus       253 ~-------------~~~~~~~~~~~~sp----dg~~l~~~~~~~~~~~~~v~~~d~~~g~-----------~~~~~~~~~  304 (706)
T 2z3z_A          253 G-------------EPKEKFLTNLSWSP----DENILYVAEVNRAQNECKVNAYDAETGR-----------FVRTLFVET  304 (706)
T ss_dssp             C-------------SCTTCEEEEEEECT----TSSEEEEEEECTTSCEEEEEEEETTTCC-----------EEEEEEEEE
T ss_pred             C-------------CCCceeEeeEEEEC----CCCEEEEEEeCCCCCeeEEEEEECCCCc-----------eeeEEEEcc
Confidence            0             25677899999999    999999988775     89999987631           122221  2


Q ss_pred             CCC---CEEEEEEcC--CCCEEEEEeCCCcEEEEe--CCCcEEEEecCCCCCCCceE-EEEeeCCCEEEE-ec-CC----
Q psy1242         450 HEQ---PVTSVAISA--ELGLVVSGSQLGPVLVHT--TFGDLLRSLDPPSGFASPES-VVMSREGVIVVN-YE-RG----  515 (540)
Q Consensus       450 h~~---~V~~v~~sp--dg~~lasgs~Dg~v~iw~--~~g~~~~~l~~~~~~~~v~~-l~fspdg~~l~s-~~-dg----  515 (540)
                      +..   .+.+++|+|  +|+++++++.||.++||.  .++..++.+..+..  .+.. ++|+|+|+.|+. +. ++    
T Consensus       305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~--~v~~~~~~spdg~~l~~~~~~~~~~~~  382 (706)
T 2z3z_A          305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEW--EVTNFAGFDPKGTRLYFESTEASPLER  382 (706)
T ss_dssp             CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSS--CEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred             CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCe--EEEeeeEEcCCCCEEEEEecCCCCceE
Confidence            222   246789999  999999999999998884  46788888877665  5666 799999998765 33 33    


Q ss_pred             eEEEEecCCcEEEeeecCCccee
Q psy1242         516 HIAAFTMNGNRLRHESHNDNLQK  538 (540)
Q Consensus       516 ~I~lw~~~g~~l~~~~~~~~V~~  538 (540)
                      .|..|++++..+..+.+...+.+
T Consensus       383 ~l~~~d~~~~~~~~l~~~~~~~~  405 (706)
T 2z3z_A          383 HFYCIDIKGGKTKDLTPESGMHR  405 (706)
T ss_dssp             EEEEEETTCCCCEESCCSSSEEE
T ss_pred             EEEEEEcCCCCceeccCCCceEE
Confidence            67777776544544444444433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.54  E-value=2.6e-14  Score=159.37  Aligned_cols=235  Identities=11%  Similarity=0.041  Sum_probs=142.0

Q ss_pred             EEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC--------ccccccCCC----cC--
Q psy1242         267 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP--------VPKRHLGDN----FS--  332 (540)
Q Consensus       267 lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~--------~~~~~~~~~----~~--  332 (540)
                      +++ +.|++|++||..+++......+..........+.||+||..++.++.....        ...+.+...    +.  
T Consensus        31 ~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  109 (723)
T 1xfd_A           31 IYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP  109 (723)
T ss_dssp             CCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT
T ss_pred             EEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCC
Confidence            444 678999999998766544333221100123468899999877665332111        111111111    00  


Q ss_pred             cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC---------cceEEEEec
Q psy1242         333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY---------GVVTCLSRS  403 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~---------~~Vt~l~~s  403 (540)
                      ......+.+++|||||+. ||.++ ++.|++||+.+++..+....+...+      .+.|+.         +.+.+++||
T Consensus       110 ~~~~~~~~~~~~SPdG~~-la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~------~~~g~~~~v~~ee~~~~~~~~~~S  181 (723)
T 1xfd_A          110 EVSNAKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGV------IYNGLSDWLYEEEILKTHIAHWWS  181 (723)
T ss_dssp             TCCSCCCSBCCBCSSTTC-EEEEE-TTEEEEESSSSSCCEEEECCCBTTT------EEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             ccccccccccEECCCCCE-EEEEE-CCeEEEEECCCCceEEEecCCCCCc------eECcccceeEEEEeccCcceEEEC
Confidence            001111456788999996 57766 4899999999888776652211110      001111         134899999


Q ss_pred             cCccCCCcEEEEEeCCC----------------------------------cEEEEEcCCCcccccCCCCCCcceEEecc
Q psy1242         404 ECNITADCFIASGSADC----------------------------------TVLLWHWNARTQSIVGETDTPTPRATLTG  449 (540)
Q Consensus       404 p~~~~dg~~l~sgs~Dg----------------------------------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~  449 (540)
                      |    ||++|++++.|+                                  +|.+||+.+.           +....+..
T Consensus       182 p----Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-----------~~~~~l~~  246 (723)
T 1xfd_A          182 P----DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-----------THDLEMMP  246 (723)
T ss_dssp             T----TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-----------CCCEECCC
T ss_pred             C----CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-----------ceeEEeeC
Confidence            9    999999988653                                  7888887653           22334443


Q ss_pred             ------CCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeC-CCcEEEEecCC-CCCCC--ceEEEEeeCCCEEEE--e-
Q psy1242         450 ------HEQPVTSVAISAELGLVVSGSQL----GPVLVHTT-FGDLLRSLDPP-SGFAS--PESVVMSREGVIVVN--Y-  512 (540)
Q Consensus       450 ------h~~~V~~v~~spdg~~lasgs~D----g~v~iw~~-~g~~~~~l~~~-~~~~~--v~~l~fspdg~~l~s--~-  512 (540)
                            |...+.+++|||||+++++.+..    ..|++|+. ++++...+..+ ..+..  ...++|+|||+.|+.  + 
T Consensus       247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  326 (723)
T 1xfd_A          247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI  326 (723)
T ss_dssp             CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred             CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence                  36789999999999988776533    45777876 67766555432 23111  137899999997664  2 


Q ss_pred             cCC------eEEEEe-cCCc
Q psy1242         513 ERG------HIAAFT-MNGN  525 (540)
Q Consensus       513 ~dg------~I~lw~-~~g~  525 (540)
                      .++      .|.+|+ ..+.
T Consensus       327 ~~~~~~~~~~l~~~d~~~~~  346 (723)
T 1xfd_A          327 PQGGRGKFYHITVSSSQPNS  346 (723)
T ss_dssp             CCSSSSCEEEEEEECSSCCS
T ss_pred             ccCCCcceeEEEEEeccCCC
Confidence            355      577777 4443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.52  E-value=1.1e-13  Score=154.91  Aligned_cols=235  Identities=10%  Similarity=-0.003  Sum_probs=152.5

Q ss_pred             eeeecCCcEEEEEccCcceEEEEcCCCC---CcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC---
Q psy1242         257 YVTLHMPSVVTVTANHQFAINRWNPDYA---ASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN---  330 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~---~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~---  330 (540)
                      .+.+.+++..+++++. ++|++|+..++   .......+..    ....+.||+||..++.+++.  ....+.+...   
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~----~~~~~~~SPDG~~la~~~~~--~i~~~d~~~g~~~  185 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG----FATDAKLSPKGGFVSFIRGR--NLWVIDLASGRQM  185 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSS----CEEEEEECTTSSEEEEEETT--EEEEEETTTTEEE
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCc----ccccccCCCCCCEEEEEeCC--cEEEEecCCCCEE
Confidence            3455556555666665 89999999876   4433333332    23357899999876655321  1111111110   


Q ss_pred             ---cCcceee--------------EEEEEEEecCCCEEEEEEecCC---------------------------------c
Q psy1242         331 ---FSQKLRV--------------RHNCFVTTVDSRFLLACGFWDN---------------------------------S  360 (540)
Q Consensus       331 ---~~~~~~v--------------~~~~~~~spdg~~llasgs~Dg---------------------------------s  360 (540)
                         ......+              ....++|||||++ |++++.|+                                 .
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence               0000000              0356889999997 46665555                                 7


Q ss_pred             EEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-----CCcEEEEEcCCCcccc
Q psy1242         361 FRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-----DCTVLLWHWNARTQSI  434 (540)
Q Consensus       361 v~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-----DgtV~lWd~~~~~~~~  434 (540)
                      |.+||+.+ ++.......             ..|...+.+++| |    ||++|++++.     +..|.+||+.+     
T Consensus       265 l~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~-p----Dg~~l~~~~~~~~~~~~~i~~~d~~~-----  321 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLG-------------KEQDIYLARVNW-R----DPQHLSFQRQSRDQKKLDLVEVTLAS-----  321 (741)
T ss_dssp             EEEECSSTTCCCEEECCC-------------SCSSEEEEEEEE-E----ETTEEEEEEEETTSSEEEEEEEETTT-----
T ss_pred             EEEEECCCCCceEEecCC-------------CCcceEEEEEEe-C----CCCEEEEEEecccCCeEEEEEEECCC-----
Confidence            88889988 775443300             147788999999 9    9999987764     56899999876     


Q ss_pred             cCCCCCCcceEEeccCCC----CEEEEEEcCCCCEEEEEeCCCcEEEE--eCCCcEEEEecCCCCCCCceEE-EEeeCCC
Q psy1242         435 VGETDTPTPRATLTGHEQ----PVTSVAISAELGLVVSGSQLGPVLVH--TTFGDLLRSLDPPSGFASPESV-VMSREGV  507 (540)
Q Consensus       435 ~~~~~~~~~~~~l~~h~~----~V~~v~~spdg~~lasgs~Dg~v~iw--~~~g~~~~~l~~~~~~~~v~~l-~fspdg~  507 (540)
                            +++...+..+..    .+.+++|+|||+++++++.||.+.||  +.++. ...+..+..  .+..+ +|+|+|+
T Consensus       322 ------g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~--~v~~~~~~s~dg~  392 (741)
T 2ecf_A          322 ------NQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNW--SVDELLAVDEKAG  392 (741)
T ss_dssp             ------CCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSS--CEEEEEEEETTTT
T ss_pred             ------CceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecce--EEEeEeEEeCCCC
Confidence                  334444544443    44688999999999999999988887  44566 778877765  56776 5999999


Q ss_pred             EEEE-ec-CC--eEEEEecC--CcEEEeee
Q psy1242         508 IVVN-YE-RG--HIAAFTMN--GNRLRHES  531 (540)
Q Consensus       508 ~l~s-~~-dg--~I~lw~~~--g~~l~~~~  531 (540)
                      .|+. +. ++  .+++|+++  |+.+..+.
T Consensus       393 ~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          393 LAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             EEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             EEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            7764 43 34  78888764  55444443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.47  E-value=8.6e-12  Score=127.58  Aligned_cols=246  Identities=7%  Similarity=0.023  Sum_probs=146.8

Q ss_pred             eeecCCcEEEEEccCcceEEEEcCC-CCCcccCCCCcCCCCCCCCCccccCCCC--eeeccC-------C-----CCCCc
Q psy1242         258 VTLHMPSVVTVTANHQFAINRWNPD-YAASIQSPSYAETPGSPPGNLPLTLDPI--LTHPTS-------N-----NNAPV  322 (540)
Q Consensus       258 ~~~~~~~~~lvs~s~D~tv~~W~~~-~~~~~~~~~~~~~v~~~~~~~~~s~D~~--l~~~g~-------~-----~~~~~  322 (540)
                      ..+.+++..+++++.+ +|.+|+.. ++.......+.  .......+.+++|+.  ++.+++       .     .....
T Consensus        45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~--~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v  121 (365)
T 1jof_A           45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP--IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE--CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred             EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee--cCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence            3455555556666766 99999985 44332221221  011123478899997  343332       0     11111


Q ss_pred             cccccC--CCcCcce-------eeEEEEEEEecCCCEEEEEEecCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEee-
Q psy1242         323 PKRHLG--DNFSQKL-------RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIF-  391 (540)
Q Consensus       323 ~~~~~~--~~~~~~~-------~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~-  391 (540)
                      ....+.  +......       .....+++|+|||++++++...++.|++|+++ +|+....-             .+. 
T Consensus       122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~-------------~~~~  188 (365)
T 1jof_A          122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-------------SVDA  188 (365)
T ss_dssp             EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-------------EEEC
T ss_pred             EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee-------------eEec
Confidence            222221  1111111       12367889999999765555457899999998 77653211             012 


Q ss_pred             -ccCcceEEEEeccCccCCCcEEEEEeC-CCcEEEEEcCCCcccccCCCCCCcceEEec----cCCC------CEEEEE-
Q psy1242         392 -GHYGVVTCLSRSECNITADCFIASGSA-DCTVLLWHWNARTQSIVGETDTPTPRATLT----GHEQ------PVTSVA-  458 (540)
Q Consensus       392 -~h~~~Vt~l~~sp~~~~dg~~l~sgs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~----~h~~------~V~~v~-  458 (540)
                       .|...+..++|+|    +|++|++++. +++|.+|+++..++.....   ...+..+.    +|..      .+.+++ 
T Consensus       189 ~~~g~~p~~~~~sp----dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  261 (365)
T 1jof_A          189 PDPGDHPRWVAMHP----TGNYLYALMEAGNRICEYVIDPATHMPVYT---HHSFPLIPPGIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             SSTTCCEEEEEECT----TSSEEEEEETTTTEEEEEEECTTTCCEEEE---EEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred             CCCCCCCCEeEECC----CCCEEEEEECCCCeEEEEEEeCCCCcEEEc---cceEEcCCCCcCCcccccccccccccEEE
Confidence             2456789999999    9999887775 7899999876422110000   00011121    2232      588999 


Q ss_pred             EcCCCCEEEEEeCCC------cEEEEeC--CCcEEE---EecCCCCCCCceEEEEee---CCCEEEEec--CCeEEEEec
Q psy1242         459 ISAELGLVVSGSQLG------PVLVHTT--FGDLLR---SLDPPSGFASPESVVMSR---EGVIVVNYE--RGHIAAFTM  522 (540)
Q Consensus       459 ~spdg~~lasgs~Dg------~v~iw~~--~g~~~~---~l~~~~~~~~v~~l~fsp---dg~~l~s~~--dg~I~lw~~  522 (540)
                      |+|||++|++++.+.      .|.+|+.  +|++..   ....+..  .+..++|+|   +|++|+++.  ++.|.+|++
T Consensus       262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC--CcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            999999887765432      7999964  566543   2333333  467899999   899998853  489999999


Q ss_pred             CCcEEE
Q psy1242         523 NGNRLR  528 (540)
Q Consensus       523 ~g~~l~  528 (540)
                      +++.|.
T Consensus       340 ~~~~l~  345 (365)
T 1jof_A          340 KDEFLH  345 (365)
T ss_dssp             ETTEEE
T ss_pred             chhhCc
Confidence            866554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.46  E-value=1.4e-11  Score=120.98  Aligned_cols=232  Identities=9%  Similarity=0.091  Sum_probs=151.9

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCC---CCCCCCccc-cCCCCeeeccCCCCCCccccccCCC----c
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETP---GSPPGNLPL-TLDPILTHPTSNNNAPVPKRHLGDN----F  331 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v---~~~~~~~~~-s~D~~l~~~g~~~~~~~~~~~~~~~----~  331 (540)
                      +..++.+.++.+.++.|++|++.... .......+..   ......+.+ ..++.+.+++.............+.    +
T Consensus        37 ~~~~g~l~v~~~~~~~i~~~d~~g~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~  115 (286)
T 1q7f_A           37 VNAQNDIIVADTNNHRIQIFDKEGRF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKF  115 (286)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTSCE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEECCCCcE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEe
Confidence            34445557787888999999986432 1111111000   011123455 4667666654210111111110000    1


Q ss_pred             CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         332 SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       332 ~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      .........+++++++|+ ++++...++.|.+||.. ++.+..+..             .++...+.+|++++    +|+
T Consensus       116 ~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~-------------~~~~~~p~~i~~~~----~g~  176 (286)
T 1q7f_A          116 GATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGC-------------SKHLEFPNGVVVND----KQE  176 (286)
T ss_dssp             CTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEEC-------------TTTCSSEEEEEECS----SSE
T ss_pred             cCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCC-------------CCccCCcEEEEECC----CCC
Confidence            000011257788899998 67787778999999965 666555510             14456789999999    899


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCcEEEEe
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISAELGLVVSGSQLG-PVLVHTTFGDLLRSL  488 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasgs~Dg-~v~iw~~~g~~~~~l  488 (540)
                      .+++.+.++.|++|+...            +.+..+..+  ...+.+++++++|.++++...++ .|.+|+.+++.+..+
T Consensus       177 l~v~~~~~~~i~~~~~~g------------~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~  244 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYEG------------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL  244 (286)
T ss_dssp             EEEEEGGGTEEEEEETTC------------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred             EEEEECCCCEEEEEcCCC------------CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE
Confidence            888888899999999643            334445333  36789999999999988888886 999999999888888


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         489 DPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      ..+.....+.+++++|+|+++++..+++|.+|+..
T Consensus       245 ~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~  279 (286)
T 1q7f_A          245 ESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  279 (286)
T ss_dssp             EESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             cccCCCCcceeEEECCCCcEEEECCCCeEEEEEcc
Confidence            66544224679999999998888778999999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.46  E-value=1.6e-12  Score=151.59  Aligned_cols=229  Identities=7%  Similarity=-0.023  Sum_probs=154.9

Q ss_pred             eeeecCCcEEEEEccCcceEEEEcCCC--CCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccc--------c
Q psy1242         257 YVTLHMPSVVTVTANHQFAINRWNPDY--AASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKR--------H  326 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~--~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~--------~  326 (540)
                      .+.+..+ .++++++.|+++++|....  ........|. .    .....+++|+..++.+.+.  ....+        .
T Consensus       208 ~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~----~~~~~~SpDG~~la~~~~~--~i~~~d~~~~~l~~  279 (1045)
T 1k32_A          208 SPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-D----YYPRHLNTDGRRILFSKGG--SIYIFNPDTEKIEK  279 (1045)
T ss_dssp             EEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-S----SCEEEEEESSSCEEEEETT--EEEEECTTTCCEEE
T ss_pred             ceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-C----cceeeEcCCCCEEEEEeCC--EEEEecCCceEeee
Confidence            3444445 5566777889999997542  2222222222 1    1235788999765544211  11111        1


Q ss_pred             cCCCcCc------ceeeEEEEEEEe-cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-ceE
Q psy1242         327 LGDNFSQ------KLRVRHNCFVTT-VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-VVT  398 (540)
Q Consensus       327 ~~~~~~~------~~~v~~~~~~~s-pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-~Vt  398 (540)
                      +......      ...-.+.+++|+ |||+. |++++ ++.+.+|++.+++... +               ..|.+ .+.
T Consensus       280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~~~~-~---------------~~~~~~~~~  341 (1045)
T 1k32_A          280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK-V---------------PEPLRIRYV  341 (1045)
T ss_dssp             CCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE-C---------------SCCSCEEEE
T ss_pred             eccCcccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCceEE-c---------------cCCCcceEE
Confidence            1110000      000125678899 99997 46665 8899999998776543 4               56767 889


Q ss_pred             EEEeccCccCCCcEEEEEeCCCcEE-EEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242         399 CLSRSECNITADCFIASGSADCTVL-LWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV  477 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~DgtV~-lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i  477 (540)
                      +++|+     +|+.|++++.+..+. +|+....            ....+.+|...+.+++|+|||+.|++++.++.|++
T Consensus       342 ~~~~s-----dg~~l~~~s~~~~l~~~~d~~~~------------~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~  404 (1045)
T 1k32_A          342 RRGGD-----TKVAFIHGTREGDFLGIYDYRTG------------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT  404 (1045)
T ss_dssp             EECSS-----SEEEEEEEETTEEEEEEEETTTC------------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eeeEc-----CCCeEEEEECCCceEEEEECCCC------------CceEecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence            99997     478898888888888 8887652            23445588889999999999999999999999999


Q ss_pred             EeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cC----------CeEEEEecCCcEEEee
Q psy1242         478 HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ER----------GHIAAFTMNGNRLRHE  530 (540)
Q Consensus       478 w~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~d----------g~I~lw~~~g~~l~~~  530 (540)
                      |+. +|+....+..|.+  .+.+++|||||++|+++ .+          +.|++|++++..+..+
T Consensus       405 ~d~~tg~~~~~~~~~~~--~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l  467 (1045)
T 1k32_A          405 VDLETGKPTVIERSREA--MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA  467 (1045)
T ss_dssp             EETTTCCEEEEEECSSS--CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred             EECCCCceEEeccCCCC--CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence            987 7777777767776  67899999999998874 32          4899999985545444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.44  E-value=3.1e-12  Score=142.52  Aligned_cols=235  Identities=7%  Similarity=-0.110  Sum_probs=137.0

Q ss_pred             eecCCcEEEEEccC---------cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         259 TLHMPSVVTVTANH---------QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       259 ~~~~~~~~lvs~s~---------D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      .+++++..+++++.         +..+.+||..++.........+ .......+.||+||..++.++.  .....+.+..
T Consensus        67 ~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~  143 (723)
T 1xfd_A           67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVG  143 (723)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET--TEEEEESSSS
T ss_pred             EECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccccccccEECCCCCEEEEEEC--CeEEEEECCC
Confidence            33344444666554         3788899998765422221110 0111345789999976665532  1111111111


Q ss_pred             Cc------Ccceee----------------EEEEEEEecCCCEEEEEEecCC----------------------------
Q psy1242         330 NF------SQKLRV----------------RHNCFVTTVDSRFLLACGFWDN----------------------------  359 (540)
Q Consensus       330 ~~------~~~~~v----------------~~~~~~~spdg~~llasgs~Dg----------------------------  359 (540)
                      ..      .+...+                ...+++|||||++| +.++.|+                            
T Consensus       144 g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~l-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  222 (723)
T 1xfd_A          144 KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRL-AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG  222 (723)
T ss_dssp             SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEE-EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred             CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEE-EEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence            00      000000                12678999999974 5555442                            


Q ss_pred             ------cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC----CCcEEEEEcCC
Q psy1242         360 ------SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA----DCTVLLWHWNA  429 (540)
Q Consensus       360 ------sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~----DgtV~lWd~~~  429 (540)
                            +|++||+.+++....+..+..         +..|...+.+++|+|    ||++|++.+.    +..|.+||+.+
T Consensus       223 ~~~~~~~l~~~d~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~~~~~~i~~~d~~~  289 (723)
T 1xfd_A          223 SENPSISLHVIGLNGPTHDLEMMPPDD---------PRMREYYITMVKWAT----STKVAVTWLNRAQNVSILTLCDATT  289 (723)
T ss_dssp             SCCCEEEEEEEESSSSCCCEECCCCCC---------GGGSSEEEEEEEESS----SSEEEEEEEETTSCEEEEEEEETTT
T ss_pred             CCCCeeEEEEEECCCCceeEEeeCCcc---------CCCccceeEEEEEeC----CCeEEEEEEcCCCCeEEEEEEeCCC
Confidence                  688888887775444421110         012467899999999    9998877653    35799999876


Q ss_pred             CcccccCCCCCCcceEEecc-CCCCEE----EEEEcCCCCEEEE--EeCCC----c--EEEEe-CCCcE---EEEecCCC
Q psy1242         430 RTQSIVGETDTPTPRATLTG-HEQPVT----SVAISAELGLVVS--GSQLG----P--VLVHT-TFGDL---LRSLDPPS  492 (540)
Q Consensus       430 ~~~~~~~~~~~~~~~~~l~~-h~~~V~----~v~~spdg~~las--gs~Dg----~--v~iw~-~~g~~---~~~l~~~~  492 (540)
                      +           ++...+.. +...+.    .++|+|||+.|+.  +..++    .  |.+|+ .++..   ...+..+.
T Consensus       290 g-----------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~  358 (723)
T 1xfd_A          290 G-----------VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD  358 (723)
T ss_dssp             C-----------CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS
T ss_pred             C-----------cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC
Confidence            2           33444433 334433    7899999997664  45677    4  55566 44433   45554333


Q ss_pred             CCCCceE-EEEeeCCCEEEE-ecC---CeEEEEecC
Q psy1242         493 GFASPES-VVMSREGVIVVN-YER---GHIAAFTMN  523 (540)
Q Consensus       493 ~~~~v~~-l~fspdg~~l~s-~~d---g~I~lw~~~  523 (540)
                      .  .+.. ++|+|+|+.|+. +.+   +.+++|+++
T Consensus       359 ~--~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          359 W--DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             S--CEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             e--EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            2  3444 699999999875 433   788999875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.44  E-value=5.9e-12  Score=127.20  Aligned_cols=205  Identities=7%  Similarity=0.055  Sum_probs=120.5

Q ss_pred             CCccccCCCCeeeccCC-CCCCccccccCCCc-Cc--c---eeeEEEEEEEecCCCEEEEEEecCCcEEEEEcc-CCeE-
Q psy1242         301 GNLPLTLDPILTHPTSN-NNAPVPKRHLGDNF-SQ--K---LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTD-NARI-  371 (540)
Q Consensus       301 ~~~~~s~D~~l~~~g~~-~~~~~~~~~~~~~~-~~--~---~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~-~g~~-  371 (540)
                      ..+.+++|+.+.+++.. .......+.+.... ..  .   .......++++|||++|++++..++++.+|++. ++.. 
T Consensus        43 ~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~  122 (347)
T 3hfq_A           43 TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT  122 (347)
T ss_dssp             CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence            35788999985554421 11122222221100 00  0   111246788999999765555578999999996 3332 


Q ss_pred             -EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC
Q psy1242         372 -VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH  450 (540)
Q Consensus       372 -~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h  450 (540)
                       +..+........      ...+...+.+++|+|    +|+.++++..++.|.+|++... +.       ......+..+
T Consensus       123 ~~~~~~~~~~~p~------~~~~~~~~~~~~~sp----dg~l~v~~~~~~~v~~~~~~~~-g~-------~~~~~~~~~~  184 (347)
T 3hfq_A          123 LTDTVQHSGHGPR------PEQDGSHIHYTDLTP----DNRLAVIDLGSDKVYVYNVSDA-GQ-------LSEQSVLTME  184 (347)
T ss_dssp             EEEEEECCCCCSS------TTCSSCCEEEEEECT----TSCEEEEETTTTEEEEEEECTT-SC-------EEEEEEEECC
T ss_pred             ecceeecCCCCCC------ccccCCCceEEEECC----CCcEEEEeCCCCEEEEEEECCC-Cc-------EEEeeeEEcC
Confidence             222200000000      001233588999999    8996666677899999998721 10       1122222222


Q ss_pred             -CCCEEEEEEcCCCCEEEE-EeCCCcEEEEeC---CCcE--EEEecCCCCC----CCceEEEEeeCCCEEEE--ecCCeE
Q psy1242         451 -EQPVTSVAISAELGLVVS-GSQLGPVLVHTT---FGDL--LRSLDPPSGF----ASPESVVMSREGVIVVN--YERGHI  517 (540)
Q Consensus       451 -~~~V~~v~~spdg~~las-gs~Dg~v~iw~~---~g~~--~~~l~~~~~~----~~v~~l~fspdg~~l~s--~~dg~I  517 (540)
                       ...+..++|+|+|+++++ +..++.+.+|+.   +++.  +..+......    ..+..++|+|+|++|+.  ..++.|
T Consensus       185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v  264 (347)
T 3hfq_A          185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL  264 (347)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred             CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence             336788999999996555 567888999854   3543  2333322210    14788999999998754  347899


Q ss_pred             EEEecC
Q psy1242         518 AAFTMN  523 (540)
Q Consensus       518 ~lw~~~  523 (540)
                      .+|+++
T Consensus       265 ~v~~~~  270 (347)
T 3hfq_A          265 AVFAVT  270 (347)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.43  E-value=9.2e-14  Score=155.06  Aligned_cols=249  Identities=12%  Similarity=0.018  Sum_probs=143.1

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCC--------CCCccccccCCCcC--
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN--------NAPVPKRHLGDNFS--  332 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~--------~~~~~~~~~~~~~~--  332 (540)
                      ++.+++++ .|++|++|+..++.......+..........+.||+||..++.++..        ......+.+.....  
T Consensus        26 dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~  104 (719)
T 1z68_A           26 GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR  104 (719)
T ss_dssp             SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred             CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence            34334444 58999999998876544333221100113467899999877655321        01111111111100  


Q ss_pred             -cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEe-cccceeeeeeEEEeeccCcc---------eEEEE
Q psy1242         333 -QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIF-GHYGVVTSRIVQIIFGHYGV---------VTCLS  401 (540)
Q Consensus       333 -~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~-~~~~~v~~~~~~~l~~h~~~---------Vt~l~  401 (540)
                       ..+.-.+..++|||||+. ||.++ |+.|++|++.+++..+... ++...+       +.||.+.         ..+++
T Consensus       105 ~~~l~~~~~~~~~SPDG~~-la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v-------~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A          105 GNELPRPIQYLCWSPVGSK-LAYVY-QNNIYLKQRPGDPPFQITFNGRENKI-------FNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             SSCCCSSBCCEEECSSTTC-EEEEE-TTEEEEESSTTSCCEECCCCCBTTTE-------EESSCCHHHHHHTTCSSCCEE
T ss_pred             ceecCcccccceECCCCCE-EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCe-------EcccccceeeeecccCcccEE
Confidence             111112567889999997 56664 8899999999887654321 111111       1233322         25899


Q ss_pred             eccCccCCCcEEEEEeCCC----------------------------------cEEEEEcCCCcccccCCCCCCcceEEe
Q psy1242         402 RSECNITADCFIASGSADC----------------------------------TVLLWHWNARTQSIVGETDTPTPRATL  447 (540)
Q Consensus       402 ~sp~~~~dg~~l~sgs~Dg----------------------------------tV~lWd~~~~~~~~~~~~~~~~~~~~l  447 (540)
                      |||    ||++|++++.|.                                  +|++||+.+......   ........+
T Consensus       176 wSP----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~---~~~~~~~~~  248 (719)
T 1z68_A          176 WSP----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP---QEVPVPAMI  248 (719)
T ss_dssp             ECT----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC---EECCCCHHH
T ss_pred             ECC----CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce---eEccCCccC
Confidence            999    999999988652                                  788998875321000   000000224


Q ss_pred             ccCCCCEEEEEEcCCCCEEEEEeC--CC--cEEEEe----C-CCcEEEEe----cCCCCCCCce-----EEEEeeCCCEE
Q psy1242         448 TGHEQPVTSVAISAELGLVVSGSQ--LG--PVLVHT----T-FGDLLRSL----DPPSGFASPE-----SVVMSREGVIV  509 (540)
Q Consensus       448 ~~h~~~V~~v~~spdg~~lasgs~--Dg--~v~iw~----~-~g~~~~~l----~~~~~~~~v~-----~l~fspdg~~l  509 (540)
                      .+|...+.+++||||++++++...  ++  .|.+|+    . +|++...+    ..+..  .+.     .++|+|||+.+
T Consensus       249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l  326 (719)
T 1z68_A          249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG--WAGGFFVSTPVFSYDAISY  326 (719)
T ss_dssp             HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS--CSSSSSCCCCEECTTSSCE
T ss_pred             CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc--eEccccCCccEECCCCCeE
Confidence            578889999999999887777543  22  256677    5 45444333    24554  344     78999999965


Q ss_pred             EE--e-cCC--eEEEEecCCcEEEee
Q psy1242         510 VN--Y-ERG--HIAAFTMNGNRLRHE  530 (540)
Q Consensus       510 ~s--~-~dg--~I~lw~~~g~~l~~~  530 (540)
                      +.  + .+|  .|.+|++++.....+
T Consensus       327 ~~~~~~~~g~~~l~~~~~~~~~~~~l  352 (719)
T 1z68_A          327 YKIFSDKDGYKHIHYIKDTVENAIQI  352 (719)
T ss_dssp             EEEEECTTSCEEEEEESSCSTTCEEC
T ss_pred             EEEEEccCCceEEEEEECCCCceEec
Confidence            43  3 334  577778775433333

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.42  E-value=1.2e-11  Score=137.38  Aligned_cols=167  Identities=12%  Similarity=0.094  Sum_probs=114.0

Q ss_pred             EEEEEEEecCCCEEEEEEecCC-----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccC---cceEEEEeccCccCC
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDN-----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY---GVVTCLSRSECNITA  409 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dg-----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~---~~Vt~l~~sp~~~~d  409 (540)
                      .+.+++|+|||+. |++++.++     .|++||+.+++....+..             ..+.   ..+.+++|+|.  .+
T Consensus       259 ~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-------------~~~~~~~~~~~~~~~sp~--~d  322 (706)
T 2z3z_A          259 FLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETGRFVRTLFV-------------ETDKHYVEPLHPLTFLPG--SN  322 (706)
T ss_dssp             EEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTCCEEEEEEE-------------EECSSCCCCCSCCEECTT--CS
T ss_pred             eEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCCceeeEEEE-------------ccCCCeECccCCceeecC--CC
Confidence            3678899999997 46665565     899999998844433310             1122   23467899871  04


Q ss_pred             CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEE-EEEcCCCCEEEEEeCC-C----cEEEEeCCCc
Q psy1242         410 DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTS-VAISAELGLVVSGSQL-G----PVLVHTTFGD  483 (540)
Q Consensus       410 g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-v~~spdg~~lasgs~D-g----~v~iw~~~g~  483 (540)
                      |+++++++.|+.++||.++..          +..+..+..|...+.+ ++|+|+++.|+.++.+ +    .|..|+..+.
T Consensus       323 g~~l~~~~~~g~~~l~~~~~~----------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYLYDTT----------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             SEEEEEECTTSSCEEEEEETT----------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             CEEEEEEccCCccEEEEEECC----------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            778999999999999998631          2456777888888877 7999999977665544 4    3444555333


Q ss_pred             EEEEecCCCCCCCceEEEEeeCCCEEEEe-cC----CeEEEEecCCcEEEeeecC
Q psy1242         484 LLRSLDPPSGFASPESVVMSREGVIVVNY-ER----GHIAAFTMNGNRLRHESHN  533 (540)
Q Consensus       484 ~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~d----g~I~lw~~~g~~l~~~~~~  533 (540)
                      .+..+. +..  .+.+++|+|+|++++.. ++    +.|.+|++++..+..+.+.
T Consensus       393 ~~~~l~-~~~--~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~~~~~~~~  444 (706)
T 2z3z_A          393 KTKDLT-PES--GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAK  444 (706)
T ss_dssp             CCEESC-CSS--SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCEEEEEECC
T ss_pred             Cceecc-CCC--ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCeEeecccc
Confidence            345554 344  57899999999988763 22    5699999985544433333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.42  E-value=1.1e-11  Score=136.60  Aligned_cols=251  Identities=11%  Similarity=-0.074  Sum_probs=150.4

Q ss_pred             eeecCCcEEEEEc--cCcceEEEEcCC-CCCcccCCCCcCCCCCC-----CCCccc--cCCCCe-eeccCCCCCCccccc
Q psy1242         258 VTLHMPSVVTVTA--NHQFAINRWNPD-YAASIQSPSYAETPGSP-----PGNLPL--TLDPIL-THPTSNNNAPVPKRH  326 (540)
Q Consensus       258 ~~~~~~~~~lvs~--s~D~tv~~W~~~-~~~~~~~~~~~~~v~~~-----~~~~~~--s~D~~l-~~~g~~~~~~~~~~~  326 (540)
                      +.+..+.++.++.  +.++..++|... ++.......+...+...     ...+.+  |+|+.. ++.++..........
T Consensus        29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~  108 (662)
T 3azo_A           29 VGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFE  108 (662)
T ss_dssp             EEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEEC
T ss_pred             eEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEc
Confidence            3444556667776  668889999853 33222333333222210     112334  488865 554432211111111


Q ss_pred             cC----CC---cCcc----eeeEEEEEEEecCCCEEEEEEecC----------CcEEEEEccC------CeEEEEEeccc
Q psy1242         327 LG----DN---FSQK----LRVRHNCFVTTVDSRFLLACGFWD----------NSFRVFSTDN------ARIVQIIFGHY  379 (540)
Q Consensus       327 ~~----~~---~~~~----~~v~~~~~~~spdg~~llasgs~D----------gsv~iwd~~~------g~~~~~l~~~~  379 (540)
                      +.    +.   +...    .......++|+|||+. |++++.|          ..|++||+.+      ++. ..+    
T Consensus       109 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l----  182 (662)
T 3azo_A          109 PDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL----  182 (662)
T ss_dssp             TTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES----
T ss_pred             CCCCCCCCCEeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE----
Confidence            11    10   1110    1235678899999997 4666655          5899999987      543 344    


Q ss_pred             ceeeeeeEEEee-ccCcceEEEEeccCccCCCcEEEEEeCC--------CcEEEEEcC-CCcccccCCCCCCcceEEecc
Q psy1242         380 GVVTSRIVQIIF-GHYGVVTCLSRSECNITADCFIASGSAD--------CTVLLWHWN-ARTQSIVGETDTPTPRATLTG  449 (540)
Q Consensus       380 ~~v~~~~~~~l~-~h~~~Vt~l~~sp~~~~dg~~l~sgs~D--------gtV~lWd~~-~~~~~~~~~~~~~~~~~~l~~  449 (540)
                                 . .+...+..++|||    ||++|+.++.+        ..|.+||+. ++..        .+......+
T Consensus       183 -----------~~~~~~~~~~~~~Sp----DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~--------~~~~~l~~~  239 (662)
T 3azo_A          183 -----------SDDAHRFVTGPRLSP----DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF--------ADTRTLLGG  239 (662)
T ss_dssp             -----------SCSCSSEECCCEECT----TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE--------EEEEEEEEE
T ss_pred             -----------EecCCCcccCceECC----CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc--------cccEEeCCC
Confidence                       4 5567788899999    99999988755        379999987 3210        023334455


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEE--EeC-CCcEEEEecCCCCC-----C-CceEEEEeeCCCEEEEecCCeEEEE
Q psy1242         450 HEQPVTSVAISAELGLVVSGSQLGPVLV--HTT-FGDLLRSLDPPSGF-----A-SPESVVMSREGVIVVNYERGHIAAF  520 (540)
Q Consensus       450 h~~~V~~v~~spdg~~lasgs~Dg~v~i--w~~-~g~~~~~l~~~~~~-----~-~v~~l~fspdg~~l~s~~dg~I~lw  520 (540)
                      |...+..++|+|||+++++++.++...|  |+. +++.......+...     . .+..++|+|++++++++.++.+.+|
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~  319 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLG  319 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEE
T ss_pred             CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEE
Confidence            6788999999999998888888885544  555 55544333322220     0 1567999999999988644878888


Q ss_pred             --ecCCcEEEeee-cCCcce
Q psy1242         521 --TMNGNRLRHES-HNDNLQ  537 (540)
Q Consensus       521 --~~~g~~l~~~~-~~~~V~  537 (540)
                        ++++..+..+. +.+.+.
T Consensus       320 ~~d~~~~~~~~l~~~~~~~~  339 (662)
T 3azo_A          320 ILDPESGELVDAAGPWTEWA  339 (662)
T ss_dssp             EEETTTTEEEECCSSCCEEE
T ss_pred             EEECCCCcEEEecCCCCeEE
Confidence              66665566554 444443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.42  E-value=3.8e-12  Score=148.35  Aligned_cols=185  Identities=8%  Similarity=-0.087  Sum_probs=129.2

Q ss_pred             cceeeec-CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcc-ccccCCC--
Q psy1242         255 NTYVTLH-MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP-KRHLGDN--  330 (540)
Q Consensus       255 ~~~~~~~-~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~-~~~~~~~--  330 (540)
                      ...+.+. +++..+++++ ++.+.+|+..++.......|.+   .....+.|+ |+..++.++.. .... ...+...  
T Consensus       298 v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~s-dg~~l~~~s~~-~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          298 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLR---IRYVRRGGD-TKVAFIHGTRE-GDFLGIYDYRTGKA  371 (1045)
T ss_dssp             GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSC---EEEEEECSS-SEEEEEEEETT-EEEEEEEETTTCCE
T ss_pred             cceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCc---ceEEeeeEc-CCCeEEEEECC-CceEEEEECCCCCc
Confidence            4555666 6666566665 7899999987655333333331   012246678 88655544321 1111 1111110  


Q ss_pred             --cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         331 --FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       331 --~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                        +. .....+.+++|+|||++ |++++.++.|++||+.+++....+               .+|.+.+.+++|+|    
T Consensus       372 ~~l~-~~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg~~~~~~---------------~~~~~~v~~~~~Sp----  430 (1045)
T 1k32_A          372 EKFE-ENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIE---------------RSREAMITDFTISD----  430 (1045)
T ss_dssp             EECC-CCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEE---------------ECSSSCCCCEEECT----
T ss_pred             eEec-CCccceeeeEECCCCCE-EEEECCCCeEEEEECCCCceEEec---------------cCCCCCccceEECC----
Confidence              11 11233678889999996 688889999999999999877766               68889999999999    


Q ss_pred             CCcEEEEEeCCC----------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         409 ADCFIASGSADC----------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       409 dg~~l~sgs~Dg----------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                      ||++|++++.++          .|++||+.+           ++ ...+.+|...+.+++|+|||+.|++++.++...+|
T Consensus       431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-----------g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-----------RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  498 (1045)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTT-----------TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             CCCeEEEEecCccccccCCCCCeEEEEECCC-----------Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence            999999887654          999999875           22 56778888889999999999999999987776655

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.42  E-value=1.8e-11  Score=123.06  Aligned_cols=172  Identities=8%  Similarity=-0.039  Sum_probs=126.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      ...++++|+|+++++++..++.|.+||..+++.+..+..+...-..      ......+.+++|+|    +|+++++++ 
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~----dg~~l~~~~~  160 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE------EVRPLQPRELVADD----ATNTVYISGI  160 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS------SCCCCEEEEEEEET----TTTEEEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc------ccCCCCCceEEECC----CCCEEEEEec
Confidence            3567889999987788888899999999999988877321100000      00001278899999    888777766 


Q ss_pred             -CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCC--
Q psy1242         418 -ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSG--  493 (540)
Q Consensus       418 -~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~--  493 (540)
                       .++.|.+||..+           .+.+..+..+...+.+++|+|+++.+++++.++.+.+|+. +++.+..+.....  
T Consensus       161 ~~~~~i~~~d~~~-----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  229 (353)
T 3vgz_A          161 GKESVIWVVDGGN-----------IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGK  229 (353)
T ss_dssp             SSSCEEEEEETTT-----------TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSS
T ss_pred             CCCceEEEEcCCC-----------CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC
Confidence             488999999875           3455666656666889999999999999999999999876 7777777765221  


Q ss_pred             CCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcEEEeee
Q psy1242         494 FASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~l~~~~  531 (540)
                      ...+..++|+|+|+.++.+  .++.|.+||+. ++.+....
T Consensus       230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            1146789999999977664  35899999986 77766654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.39  E-value=2.1e-12  Score=140.51  Aligned_cols=145  Identities=15%  Similarity=0.093  Sum_probs=115.6

Q ss_pred             EEEEEecCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         340 NCFVTTVDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+++|+|||++ |++++.|    +.|++||+.+++.. .+               .+|.+.+..++|+|    ||+.|++
T Consensus       153 ~~~~~spDG~~-la~~~~~~~~~~~i~~~d~~~g~~~-~l---------------~~~~~~~~~~~~Sp----DG~~l~~  211 (582)
T 3o4h_A          153 FGFVSDIRGDL-IAGLGFFGGGRVSLFTSNLSSGGLR-VF---------------DSGEGSFSSASISP----GMKVTAG  211 (582)
T ss_dssp             CEEEEEEETTE-EEEEEEEETTEEEEEEEETTTCCCE-EE---------------CCSSCEEEEEEECT----TSCEEEE
T ss_pred             ceEEECCCCCE-EEEEEEcCCCCeEEEEEcCCCCCce-Ee---------------ecCCCccccceECC----CCCEEEE
Confidence            57889999997 5666666    78999999988764 45               67888899999999    9999998


Q ss_pred             EeCCC--cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEE--------EcCCCCEEEEEeCCCcEEEEeCCCcEE
Q psy1242         416 GSADC--TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVA--------ISAELGLVVSGSQLGPVLVHTTFGDLL  485 (540)
Q Consensus       416 gs~Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~--------~spdg~~lasgs~Dg~v~iw~~~g~~~  485 (540)
                      ++.++  +|.+||+.+           +++. .+.+|...+..++        |+|||.++++++.||++++|.. |+.+
T Consensus       212 ~~~~~~~~i~~~d~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~  278 (582)
T 3o4h_A          212 LETAREARLVTVDPRD-----------GSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERV  278 (582)
T ss_dssp             EECSSCEEEEEECTTT-----------CCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEE
T ss_pred             ccCCCeeEEEEEcCCC-----------CcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCee
Confidence            88999  899999876           2344 6677777776677        9999999999999999999988 7765


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEEe-cC---CeEEEEecCC
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVNY-ER---GHIAAFTMNG  524 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s~-~d---g~I~lw~~~g  524 (540)
                      .   .+.+  .+.+++|+ +|++++++ ++   ..+.+|+.++
T Consensus       279 ~---~~~~--~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          279 E---APQG--NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             C---CCSS--EEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred             c---cCCC--ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence            5   2334  57899999 99988874 33   4577777766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.39  E-value=1.3e-11  Score=122.97  Aligned_cols=171  Identities=10%  Similarity=-0.036  Sum_probs=122.7

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      ..+++++|+|+.++++++.++.|.+||+.+++.+..+.....          ..|...+.+++|+|    +|++|++++ 
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~----dg~~l~~~~~  101 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----------EERVKSLFGAALSP----DGKTLAIYES  101 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----------TEEEECTTCEEECT----TSSEEEEEEE
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----------ccccccccceEECC----CCCEEEEEec
Confidence            345788999998778888889999999999988776621000          00223677899999    999888886 


Q ss_pred             -----------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEE
Q psy1242         418 -----------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLL  485 (540)
Q Consensus       418 -----------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~  485 (540)
                                 .++.|.+||+.+           ++.+..+.. ...+.+++|+|+++.++++  ++.|.+|+. +++.+
T Consensus       102 ~~~~~~~~~~~~~~~i~v~d~~~-----------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          102 PVRLELTHFEVQPTRVALYDAET-----------LSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTT-----------TEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEE
T ss_pred             ccccccccccccCceEEEEECCC-----------CcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEe
Confidence                       679999999865           234444443 4457789999999988877  688999876 67666


Q ss_pred             EEecCCC--CC--------------------------------------------------------------CCceEEE
Q psy1242         486 RSLDPPS--GF--------------------------------------------------------------ASPESVV  501 (540)
Q Consensus       486 ~~l~~~~--~~--------------------------------------------------------------~~v~~l~  501 (540)
                      ..+..+.  ..                                                              ..+.+++
T Consensus       168 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  247 (337)
T 1pby_B          168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA  247 (337)
T ss_dssp             EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEE
Confidence            6554332  00                                                              0234589


Q ss_pred             EeeCCCEEEEecCCeEEEEecC-CcEEEeeecCCccee
Q psy1242         502 MSREGVIVVNYERGHIAAFTMN-GNRLRHESHNDNLQK  538 (540)
Q Consensus       502 fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V~~  538 (540)
                      |+|+|++++++ ++.|.+||++ ++.+........+.+
T Consensus       248 ~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~  284 (337)
T 1pby_B          248 VNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYS  284 (337)
T ss_dssp             ECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCE
T ss_pred             ECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceee
Confidence            99999998888 7999999987 566666554444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.37  E-value=1.5e-11  Score=123.30  Aligned_cols=169  Identities=7%  Similarity=-0.044  Sum_probs=120.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-----CcceEEEEeccCccCCCcEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-----YGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-----~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ...++++|+|+.+++++..++.|.+||+.+++.+..+..              ++     ...+.+++|+|    +|++|
T Consensus        45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~--------------~~~~~~~~~~~~~~~~sp----dg~~l  106 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL--------------SSVPGEVGRSMYSFAISP----DGKEV  106 (349)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES--------------CCSTTEEEECSSCEEECT----TSSEE
T ss_pred             CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc--------------ccccccccccccceEECC----CCCEE
Confidence            356788999998777877899999999999988776621              11     23478899999    99999


Q ss_pred             EEEeCC------------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-
Q psy1242         414 ASGSAD------------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-  480 (540)
Q Consensus       414 ~sgs~D------------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-  480 (540)
                      ++++.+            +.|.+||+.+...        .+.+..+. +...+.+++|+|+|+ +++++.  .|.+|+. 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~  174 (349)
T 1jmx_B          107 YATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------AKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVK  174 (349)
T ss_dssp             EEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------BCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTT
T ss_pred             EEEcccccccccccccCCCeEEEEECCCccc--------cceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCC
Confidence            998865            8999999875321        12233343 334688999999999 555543  4888876 


Q ss_pred             CCcEEEEecCCCC------------------------------------------------------------------C
Q psy1242         481 FGDLLRSLDPPSG------------------------------------------------------------------F  494 (540)
Q Consensus       481 ~g~~~~~l~~~~~------------------------------------------------------------------~  494 (540)
                      +++.+..+..+..                                                                  .
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (349)
T 1jmx_B          175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT  254 (349)
T ss_dssp             TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence            7777776654320                                                                  0


Q ss_pred             CCceEEEEee-CCCEEEEecCCeEEEEecC-CcEEEeeecCCccee
Q psy1242         495 ASPESVVMSR-EGVIVVNYERGHIAAFTMN-GNRLRHESHNDNLQK  538 (540)
Q Consensus       495 ~~v~~l~fsp-dg~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V~~  538 (540)
                      ..+..++|+| +|++++++ ++.|.+||+. ++.+........+.+
T Consensus       255 ~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~  299 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYC  299 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCE
T ss_pred             CcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccc
Confidence            0234677889 99999888 8999999987 666666654444444

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.34  E-value=1.3e-10  Score=117.95  Aligned_cols=239  Identities=10%  Similarity=0.093  Sum_probs=133.2

Q ss_pred             ccCcceEEEEcCC--CCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCC---CCCccccccCCC---cCcc-----ee
Q psy1242         270 ANHQFAINRWNPD--YAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNN---NAPVPKRHLGDN---FSQK-----LR  336 (540)
Q Consensus       270 ~s~D~tv~~W~~~--~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~---~~~~~~~~~~~~---~~~~-----~~  336 (540)
                      .+.+..|.+|...  ++.........   ......+.+++|+..+.+++..   ......+.+...   ....     ..
T Consensus        23 ~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~   99 (361)
T 3scy_A           23 SGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG   99 (361)
T ss_dssp             SSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             CCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence            3557788888654  33322111111   2233457899999766555432   112222222110   0000     01


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEe---cccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIF---GHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~---~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      .....+++  ++++|+++...+++|.+|++.....+..+.   .+...-    ......+...+.+++|+|    +|++|
T Consensus       100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~sp----dg~~l  169 (361)
T 3scy_A          100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG----PDKERQTMPHLHCVRITP----DGKYL  169 (361)
T ss_dssp             SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC----SCTTTCSSCCEEEEEECT----TSSEE
T ss_pred             CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC----CCccccCCCcceEEEECC----CCCEE
Confidence            12345555  888877777678999999997543321110   000000    000011234468899999    99877


Q ss_pred             EEEe-CCCcEEEEEcCCCcccccCCCCCCcc----eEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC-CCcE--
Q psy1242         414 ASGS-ADCTVLLWHWNARTQSIVGETDTPTP----RATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT-FGDL--  484 (540)
Q Consensus       414 ~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~~----~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~-~g~~--  484 (540)
                      ++++ .++.|.+|++.......  .......    ......+.....+++|+|+|+++++++ .++.|.+|+. ++++  
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~  247 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANAD--NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE  247 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTT--TCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcc--cccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence            6655 58999999987532100  0000000    122233455678999999999877776 6899999965 5544  


Q ss_pred             EEEecCCC-CCCCceEEEEeeCCCEEEEe-c--CCeEEEEecC
Q psy1242         485 LRSLDPPS-GFASPESVVMSREGVIVVNY-E--RGHIAAFTMN  523 (540)
Q Consensus       485 ~~~l~~~~-~~~~v~~l~fspdg~~l~s~-~--dg~I~lw~~~  523 (540)
                      +..+.... ....+..++|+|||++|+++ .  ++.|.+|+++
T Consensus       248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            33332221 11146799999999988653 3  4789999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.32  E-value=4.8e-11  Score=133.84  Aligned_cols=247  Identities=13%  Similarity=0.070  Sum_probs=139.5

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCC-CCccccCCCCeeeccCCCCCCc--------cccccCC
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPP-GNLPLTLDPILTHPTSNNNAPV--------PKRHLGD  329 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~-~~~~~s~D~~l~~~g~~~~~~~--------~~~~~~~  329 (540)
                      +.+++..++++  |++|++|++.++...... +|........ ..+.+|+|+..++.++......        ....+..
T Consensus        24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~  101 (740)
T 4a5s_A           24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (740)
T ss_dssp             ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC
Confidence            33344457765  899999999887644332 2332221111 1267899998666543211100        0011100


Q ss_pred             ----CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEe-cccceeeeeeEEEeeccC---------c
Q psy1242         330 ----NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIF-GHYGVVTSRIVQIIFGHY---------G  395 (540)
Q Consensus       330 ----~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~-~~~~~v~~~~~~~l~~h~---------~  395 (540)
                          .+.. ........+|||||+. ||.++ |+.|++|++.+++..+... ++...+       +.++.         +
T Consensus       102 ~~~~~l~~-~~~~~~~~~~SPdG~~-la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~-------~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A          102 RQLITEER-IPNNTQWVTWSPVGHK-LAYVW-NNDIYVKIEPNLPSYRITWTGKEDII-------YNGITDWVYEEEVFS  171 (740)
T ss_dssp             TEECCSSC-CCTTEEEEEECSSTTC-EEEEE-TTEEEEESSTTSCCEECCSCCBTTTE-------EESBCCHHHHHHTSS
T ss_pred             CcEEEccc-CCCcceeeEECCCCCE-EEEEE-CCeEEEEECCCCceEEEcCCCCccce-------ecCcccccccchhcC
Confidence                0000 0112677889999997 46664 7999999999887554221 111110       12222         2


Q ss_pred             ceEEEEeccCccCCCcEEEEEeCCCc-EE-----------------------------------EEEcCC---CcccccC
Q psy1242         396 VVTCLSRSECNITADCFIASGSADCT-VL-----------------------------------LWHWNA---RTQSIVG  436 (540)
Q Consensus       396 ~Vt~l~~sp~~~~dg~~l~sgs~Dgt-V~-----------------------------------lWd~~~---~~~~~~~  436 (540)
                      ....++|||    ||++|+.++.|.+ ++                                   +||+.+   +..    
T Consensus       172 ~~~~~~wSp----Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~----  243 (740)
T 4a5s_A          172 AYSALWWSP----NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN----  243 (740)
T ss_dssp             SSBCEEECT----TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC----
T ss_pred             CCcceEECC----CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc----
Confidence            234589999    9999998875433 44                                   444433   210    


Q ss_pred             CCCCCcceEEec------cCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEeC-CCc----EE--EEe--cCCCCCCC-
Q psy1242         437 ETDTPTPRATLT------GHEQPVTSVAISAELGLVVSGSQ----LGPVLVHTT-FGD----LL--RSL--DPPSGFAS-  496 (540)
Q Consensus       437 ~~~~~~~~~~l~------~h~~~V~~v~~spdg~~lasgs~----Dg~v~iw~~-~g~----~~--~~l--~~~~~~~~-  496 (540)
                          . ....+.      +|...+..++|+|||+.++....    +..|.+|+. +|+    +.  ..+  ..+..++. 
T Consensus       244 ----~-~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~  318 (740)
T 4a5s_A          244 ----A-TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR  318 (740)
T ss_dssp             ----C-CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred             ----c-eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence                0 122232      37888999999999997665533    235777765 555    21  122  33454332 


Q ss_pred             --ceEEEEeeCCCEEE-Ee-c-C--CeEEEEecCCcEEEeee
Q psy1242         497 --PESVVMSREGVIVV-NY-E-R--GHIAAFTMNGNRLRHES  531 (540)
Q Consensus       497 --v~~l~fspdg~~l~-s~-~-d--g~I~lw~~~g~~l~~~~  531 (540)
                        ...++|+|||+.++ .. + +  ..|.+|+++|.....+.
T Consensus       319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence              34789999999776 43 2 3  46888898866554443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.30  E-value=1.9e-10  Score=115.89  Aligned_cols=225  Identities=12%  Similarity=0.076  Sum_probs=139.1

Q ss_pred             ceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC------cC--------cceeeEE
Q psy1242         274 FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN------FS--------QKLRVRH  339 (540)
Q Consensus       274 ~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~------~~--------~~~~v~~  339 (540)
                      ++|.+||..++......+.  ........+.+.+++.+.++....... ......+.      +.        ...-...
T Consensus        69 ~~i~~~d~~~g~~~~~~~~--~~~~~p~gia~d~~g~l~v~d~~~~~v-~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P  145 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGK--NLFYLPHGLSIDTDGNYWVTDVALHQV-FKLDPHSKEGPLLILGRSMQPGSDQNHFCQP  145 (329)
T ss_dssp             CCEEEECTTTCCEEEEECT--TTCSSEEEEEECTTSCEEEEETTTTEE-EEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred             CcEEEEECCCCeEEeccCC--CccCCceEEEECCCCCEEEEECCCCEE-EEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence            4789999876553322110  001122346777888777665322111 11111110      00        0111136


Q ss_pred             EEEEEec-CCCEEEEEEe-cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC-CcEEEEE
Q psy1242         340 NCFVTTV-DSRFLLACGF-WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA-DCFIASG  416 (540)
Q Consensus       340 ~~~~~sp-dg~~llasgs-~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-g~~l~sg  416 (540)
                      ..++++| +|. ++++.+ .++.|++|+ .+|+.+..+.......     ....++......|+++|    + +..+++.
T Consensus       146 ~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~-----~~~~~~~~~p~gia~d~----~~g~l~v~d  214 (329)
T 3fvz_A          146 TDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGS-----SPRPGQFSVPHSLALVP----HLDQLCVAD  214 (329)
T ss_dssp             EEEEECTTTCC-EEEEECSSCCEEEEEC-TTSCEEEEECEECCSS-----SCCTTEESCEEEEEEET----TTTEEEEEE
T ss_pred             cEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCC-----CCCCcccCCCcEEEEEC----CCCEEEEEE
Confidence            7888999 677 677776 689999999 4577776662100000     00012334588999999    7 7888888


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcC------CCCEEEEEeCCCcEEEEe-CCCcEEEE
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISA------ELGLVVSGSQLGPVLVHT-TFGDLLRS  487 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~sp------dg~~lasgs~Dg~v~iw~-~~g~~~~~  487 (540)
                      ..+++|++|+..+           ++.+..+  .++...+.+++++|      +|...++.+.+..|++|+ .+|+.+..
T Consensus       215 ~~~~~I~~~~~~~-----------G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~  283 (329)
T 3fvz_A          215 RENGRIQCFKTDT-----------KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV  283 (329)
T ss_dssp             TTTTEEEEEETTT-----------CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEECCC-----------CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence            8899999999874           3455555  34667888999999      333333333445888887 58998888


Q ss_pred             ec---CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCc
Q psy1242         488 LD---PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGN  525 (540)
Q Consensus       488 l~---~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~  525 (540)
                      +.   .+..  .+..|+++|+|.++++ ..+++|.+|+++|+
T Consensus       284 ~~~~~~~~~--~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          284 FKPVRKHFD--MPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             ECCSSSCCS--SEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EcCCCCccC--CeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            74   3333  5799999999977666 45789999998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.26  E-value=6.5e-10  Score=111.93  Aligned_cols=164  Identities=18%  Similarity=0.185  Sum_probs=126.0

Q ss_pred             EEEEEEecCCCEEEEEEecC------------------------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC
Q psy1242         339 HNCFVTTVDSRFLLACGFWD------------------------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY  394 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~D------------------------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~  394 (540)
                      +.+++++++|+ ++++++.+                        ++|.+||..+++.+..+.              .++.
T Consensus        26 v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~   90 (329)
T 3fvz_A           26 VSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--------------KNLF   90 (329)
T ss_dssp             EEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--------------TTTC
T ss_pred             ceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--------------CCcc
Confidence            67788899998 56777766                        479999999898876551              2455


Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe---------ccCCCCEEEEEEcC-CCC
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL---------TGHEQPVTSVAISA-ELG  464 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---------~~h~~~V~~v~~sp-dg~  464 (540)
                      .....|+++|    +|+++++...++.|++|+.....          ..+..+         .++-....+|+++| ++.
T Consensus        91 ~~p~gia~d~----~g~l~v~d~~~~~v~~~~~~g~~----------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~  156 (329)
T 3fvz_A           91 YLPHGLSIDT----DGNYWVTDVALHQVFKLDPHSKE----------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA  156 (329)
T ss_dssp             SSEEEEEECT----TSCEEEEETTTTEEEEECTTCSS----------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred             CCceEEEECC----CCCEEEEECCCCEEEEEeCCCCe----------EEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence            6789999999    99988988889999999975421          123333         34555789999999 788


Q ss_pred             EEEEEe-CCCcEEEEeCCCcEEEEecCCCC--------CCCceEEEEeeC-CCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         465 LVVSGS-QLGPVLVHTTFGDLLRSLDPPSG--------FASPESVVMSRE-GVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       465 ~lasgs-~Dg~v~iw~~~g~~~~~l~~~~~--------~~~v~~l~fspd-g~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      ++++.+ .++.|++|+.+|+.+..+.....        ...+..|+++|+ |.++++ ..+++|.+|+++ |+.+..+.
T Consensus       157 lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          157 VFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             EEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            888887 68999999999998888753221        013789999999 666666 357899999998 99888774

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.22  E-value=1e-09  Score=111.99  Aligned_cols=162  Identities=10%  Similarity=0.045  Sum_probs=109.1

Q ss_pred             EEEEecCCCEE-EEEEe-------------cCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEe-eccCcceEEEEecc
Q psy1242         341 CFVTTVDSRFL-LACGF-------------WDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQII-FGHYGVVTCLSRSE  404 (540)
Q Consensus       341 ~~~~spdg~~l-lasgs-------------~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l-~~h~~~Vt~l~~sp  404 (540)
                      +++++|||+++ ++++.             .++++.+|++. +|+....+.            .+ ..+...+.+++|+|
T Consensus        87 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~------------~~~~~~~~~~~~~~~sp  154 (365)
T 1jof_A           87 ANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ------------NYEYQENTGIHGMVFDP  154 (365)
T ss_dssp             GGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE------------EEECCTTCCEEEEEECT
T ss_pred             cEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe------------eEEeCCCCcceEEEECC
Confidence            46789999963 44543             68999999997 466554441            00 12456799999999


Q ss_pred             CccCCCcEEEEEeC-CCcEEEEEcC-CCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEe
Q psy1242         405 CNITADCFIASGSA-DCTVLLWHWN-ARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQ-LGPVLVHT  479 (540)
Q Consensus       405 ~~~~dg~~l~sgs~-DgtV~lWd~~-~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~  479 (540)
                          ||++|++++. +++|.+|++. ++.         ...+..+.  .|...+..++|+|+|+++++++. ++.|.+|+
T Consensus       155 ----dG~~l~~~~~~~~~v~~~~~~~~g~---------~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          155 ----TETYLYSADLTANKLWTHRKLASGE---------VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             ----TSSEEEEEETTTTEEEEEEECTTSC---------EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ----CCCEEEEEcCCCCEEEEEEECCCCC---------EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence                9998887764 6899999987 322         11223333  34667899999999998887775 68898874


Q ss_pred             C---CCcEE---EEecC-CC---CCC-------CceEEE-EeeCCCEEEEec--CC-----eEEEEecC--CcEE
Q psy1242         480 T---FGDLL---RSLDP-PS---GFA-------SPESVV-MSREGVIVVNYE--RG-----HIAAFTMN--GNRL  527 (540)
Q Consensus       480 ~---~g~~~---~~l~~-~~---~~~-------~v~~l~-fspdg~~l~s~~--dg-----~I~lw~~~--g~~l  527 (540)
                      .   +|++.   ..+.. +.   +..       .+..++ |+|||++|+++.  ++     .|.+|+++  |++.
T Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            3   56653   22221 11   100       267899 999999887642  23     89999984  5544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.21  E-value=1.3e-09  Score=107.64  Aligned_cols=171  Identities=10%  Similarity=0.032  Sum_probs=118.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..+++++++|+ ++++...++.|.+||..+++.........           ......+..++++|    +|++++|.+.
T Consensus        71 ~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-----------~~~~~~~~~i~~d~----~G~l~vtd~~  134 (296)
T 3e5z_A           71 QNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADSFE-----------GKKLNSPNDVCLAP----DGSLWFSDPT  134 (296)
T ss_dssp             EEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECEET-----------TEECCCCCCEEECT----TSCEEEEECS
T ss_pred             cceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeeccC-----------CCCCCCCCCEEECC----CCCEEEECCc
Confidence            46788899999 56777667899999998887654331000           01123567899999    9998887432


Q ss_pred             CC---------------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--C
Q psy1242         419 DC---------------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT--F  481 (540)
Q Consensus       419 Dg---------------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~--~  481 (540)
                      +|               .-.||.++..           ..+..+..+.....+++|+|+++.+++.+.++.|.+|+.  +
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~-----------g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~  203 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPD-----------GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR  203 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTT-----------SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS
T ss_pred             cccccccccccccccCCCcEEEEECCC-----------CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC
Confidence            11               2255555431           123445566677899999999998877888899988864  5


Q ss_pred             CcE---EEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEeeecCCcceec
Q psy1242         482 GDL---LRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQKT  539 (540)
Q Consensus       482 g~~---~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~~~~~~V~~v  539 (540)
                      |++   ...+..+..  .+.+++++++|++.++. ++.|.+|+++|+.+..+.....+.++
T Consensus       204 g~~~~~~~~~~~~~~--~p~~i~~d~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~~~~~  261 (296)
T 3e5z_A          204 GETEYQGVHFTVEPG--KTDGLRVDAGGLIWASA-GDGVHVLTPDGDELGRVLTPQTTSNL  261 (296)
T ss_dssp             SCEEEEEEEECCSSS--CCCSEEEBTTSCEEEEE-TTEEEEECTTSCEEEEEECSSCCCEE
T ss_pred             CcCcCCCeEeeCCCC--CCCeEEECCCCCEEEEc-CCeEEEECCCCCEEEEEECCCCceeE
Confidence            655   344422333  56889999999987777 88999999999998887633225554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.18  E-value=6.5e-11  Score=131.93  Aligned_cols=233  Identities=7%  Similarity=-0.026  Sum_probs=135.4

Q ss_pred             eeeecCCcEEEEEccC---------cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc
Q psy1242         257 YVTLHMPSVVTVTANH---------QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL  327 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~---------D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~  327 (540)
                      .+.+++++..+++++.         ++++++||..++........    ......+.||+||..++.+.+.  ....+.+
T Consensus        64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~~~~--~i~~~~~  137 (719)
T 1z68_A           64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYVYQN--NIYLKQR  137 (719)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEEETT--EEEEESS
T ss_pred             eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCCEEEEEECC--eEEEEeC
Confidence            3445555555666654         78999999987654111111    1223467899999777655321  1111111


Q ss_pred             CCCc------Cccee-e---------------EEEEEEEecCCCEEEEEEecCC--------------------------
Q psy1242         328 GDNF------SQKLR-V---------------RHNCFVTTVDSRFLLACGFWDN--------------------------  359 (540)
Q Consensus       328 ~~~~------~~~~~-v---------------~~~~~~~spdg~~llasgs~Dg--------------------------  359 (540)
                      ....      ..... +               ...+++|||||++ ||.++.|.                          
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            1100      00000 0               1147889999997 56665442                          


Q ss_pred             --------cEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcEEEE
Q psy1242         360 --------SFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTVLLW  425 (540)
Q Consensus       360 --------sv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV~lW  425 (540)
                              +|++||+.+++..  ..+..         -..+.+|...+.+++|+|    |++.+++....    ..|.+|
T Consensus       217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sp----D~~~~~~~~~~~~~~~~l~~~  283 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTYPAYVGPQEVPV---------PAMIASSDYYFSWLTWVT----DERVCLQWLKRVQNVSVLSIC  283 (719)
T ss_dssp             TTSCCCEEEEEEEESSCHHHHCCEECCC---------CHHHHTSCEEEEEEEESS----SSEEEEEEEESSTTEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCCCCccceeEccC---------CccCCCCcceEEEeEEeC----CCeEEEEEeccccCeEEEEEE
Confidence                    6778888876542  11100         001146888899999999    98877775432    247778


Q ss_pred             E----cCCCcccccCCCCCCcceEEe----ccCCCCEE-----EEEEcCCCCEEE--EEeCCCcEEE--EeCCCcEEEEe
Q psy1242         426 H----WNARTQSIVGETDTPTPRATL----TGHEQPVT-----SVAISAELGLVV--SGSQLGPVLV--HTTFGDLLRSL  488 (540)
Q Consensus       426 d----~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~-----~v~~spdg~~la--sgs~Dg~v~i--w~~~g~~~~~l  488 (540)
                      |    ..++.           +...+    .+|...+.     +++|+|||+.++  ++..+|...|  |+..+.....+
T Consensus       284 d~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~l  352 (719)
T 1z68_A          284 DFREDWQTWD-----------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQI  352 (719)
T ss_dssp             EECSSSSSEE-----------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEEC
T ss_pred             cccCCCCCCc-----------eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEec
Confidence            8    54422           22222    36776666     789999999554  4556776555  55544335566


Q ss_pred             cCCCCCCCceEEEEeeCCCEEEE-ecC-----CeEEEEecC
Q psy1242         489 DPPSGFASPESVVMSREGVIVVN-YER-----GHIAAFTMN  523 (540)
Q Consensus       489 ~~~~~~~~v~~l~fspdg~~l~s-~~d-----g~I~lw~~~  523 (540)
                      ..+..  .+..+.++ +|+.|+. +.+     +..++|.++
T Consensus       353 t~~~~--~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          353 TSGKW--EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             SCSSS--CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             ccCce--EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            65444  56777777 8776665 443     678888754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.16  E-value=4.7e-09  Score=102.71  Aligned_cols=161  Identities=12%  Similarity=0.142  Sum_probs=122.7

Q ss_pred             EEEEEEe-cCCCEEEEEEec-CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFVTT-VDSRFLLACGFW-DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~s-pdg~~llasgs~-Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ...+++. ++++ +++++.. ++.|++|| .+++.+..+.              ..+...+.+++++|    +|+.+++.
T Consensus        79 p~~i~~~~~~g~-l~v~~~~~~~~i~~~d-~~g~~~~~~~--------------~~~~~~~~~i~~~~----~g~l~v~~  138 (286)
T 1q7f_A           79 PNRVAVVRNSGD-IIVTERSPTHQIQIYN-QYGQFVRKFG--------------ATILQHPRGVTVDN----KGRIIVVE  138 (286)
T ss_dssp             EEEEEEETTTTE-EEEEECGGGCEEEEEC-TTSCEEEEEC--------------TTTCSCEEEEEECT----TSCEEEEE
T ss_pred             ceEEEEEcCCCe-EEEEcCCCCCEEEEEC-CCCcEEEEec--------------CccCCCceEEEEeC----CCCEEEEE
Confidence            5677774 6666 5666643 89999999 5577766651              23446789999999    89888888


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGF  494 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~  494 (540)
                      ..++.|.+|+...            +.+..+.  ++...+.+++++++|.++++.+.++.|.+|+.+++.+..+......
T Consensus       139 ~~~~~i~~~~~~g------------~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~  206 (286)
T 1q7f_A          139 CKVMRVIIFDQNG------------NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGIT  206 (286)
T ss_dssp             TTTTEEEEECTTS------------CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTS
T ss_pred             CCCCEEEEEcCCC------------CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCcc
Confidence            8889999998543            2333442  4556789999999999888888899999999989888888654321


Q ss_pred             CCceEEEEeeCCCEEEEec-CC-eEEEEecCCcEEEeee
Q psy1242         495 ASPESVVMSREGVIVVNYE-RG-HIAAFTMNGNRLRHES  531 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~-dg-~I~lw~~~g~~l~~~~  531 (540)
                      ..+..++++++|+++++.. ++ .|.+|+.+|+.+..+.
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~  245 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE  245 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc
Confidence            2578999999999888754 44 9999999999887775

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.12  E-value=8e-10  Score=123.91  Aligned_cols=142  Identities=12%  Similarity=-0.020  Sum_probs=101.1

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      ..++|+|||++ ++++  |++|++||+.+++....+.+|..          ..+......++|||    ||++|+.++.+
T Consensus        20 ~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~Sp----dg~~l~~~~~~   82 (740)
T 4a5s_A           20 YSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSVFLENSTF----------DEFGHSINDYSISP----DGQFILLEYNY   82 (740)
T ss_dssp             CCEEECSSSEE-EEEE--TTEEEEEETTTCCEEEEECTTTT----------TTCCSCCCEEEECT----TSSEEEEEEEE
T ss_pred             cccEECCCCcE-EEEc--CCcEEEEECCCCceEEEEechhh----------hhhcccccceEECC----CCCEEEEEECC
Confidence            45788999984 6776  99999999999998777733221          01111234588999    99999999876


Q ss_pred             ---------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEec
Q psy1242         420 ---------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLD  489 (540)
Q Consensus       420 ---------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~  489 (540)
                               +.+.+||+.++.            ...+..|...+..++|||||+.||.++ |+.|++|+. +|+.. .+.
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~~------------~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~-~lt  148 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKRQ------------LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY-RIT  148 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTTE------------ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE-ECC
T ss_pred             eeeEEEccceEEEEEECCCCc------------EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE-EEc
Confidence                     556699987632            234667788899999999999999885 689999976 44433 332


Q ss_pred             --CCCCC---------------CCceEEEEeeCCCEEEEe
Q psy1242         490 --PPSGF---------------ASPESVVMSREGVIVVNY  512 (540)
Q Consensus       490 --~~~~~---------------~~v~~l~fspdg~~l~s~  512 (540)
                        ++...               ....+++|||||+.|+..
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence              22110               012358999999999874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.11  E-value=7.5e-09  Score=101.77  Aligned_cols=190  Identities=12%  Similarity=0.052  Sum_probs=137.8

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  342 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  342 (540)
                      |..++++++.+..|.+||..+++..                                     +++.....    ....++
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~-------------------------------------w~~~~~~~----~~~~~~   42 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV-------------------------------------WEYPLEKG----WECNSV   42 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE-------------------------------------EEEECCTT----CCCCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE-------------------------------------EEeCCCcc----CCCcCe
Confidence            5677999999999999998553311                                     11111000    013456


Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-CcceEEEEeccCccCCCcEEEEEeC-CC
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-YGVVTCLSRSECNITADCFIASGSA-DC  420 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-~~~Vt~l~~sp~~~~dg~~l~sgs~-Dg  420 (540)
                      +++|+|+ +++  +.++.|..||. +|+.+..+               ..+ ...+.++.+.+    +|+.+++.+. ++
T Consensus        43 ~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~---------------~~~~~~~~~~~~~~~----dG~~lv~~~~~~~   99 (276)
T 3no2_A           43 AATKAGE-ILF--SYSKGAKMITR-DGRELWNI---------------AAPAGCEMQTARILP----DGNALVAWCGHPS   99 (276)
T ss_dssp             EECTTSC-EEE--ECBSEEEEECT-TSCEEEEE---------------ECCTTCEEEEEEECT----TSCEEEEEESTTE
T ss_pred             EECCCCC-EEE--eCCCCEEEECC-CCCEEEEE---------------cCCCCccccccEECC----CCCEEEEecCCCC
Confidence            7799999 456  34788999999 79988888               333 34678889999    9999999887 77


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEec------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCC
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLT------GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGF  494 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~  494 (540)
                      .|..++...            +.+..+.      ++......+++.++|.++++.+.++.|..++..|+.+.++..+.  
T Consensus       100 ~v~~vd~~G------------k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~--  165 (276)
T 3no2_A          100 TILEVNMKG------------EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSG--  165 (276)
T ss_dssp             EEEEECTTS------------CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSS--
T ss_pred             EEEEEeCCC------------CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCC--
Confidence            777666432            2222221      22223445678999999999999999999998899999988753  


Q ss_pred             CCceEEEEeeCCCEEEEec-CCeEEEEecC-CcEEEeee
Q psy1242         495 ASPESVVMSREGVIVVNYE-RGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~-dg~I~lw~~~-g~~l~~~~  531 (540)
                       .+.++.+.++|++++++. +++|..+|++ |+.+-++.
T Consensus       166 -~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          166 -TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             -CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             -CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence             457788899999988854 5689999998 99988775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.10  E-value=9.7e-09  Score=99.26  Aligned_cols=224  Identities=9%  Similarity=0.009  Sum_probs=137.5

Q ss_pred             cEEEE-EccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC----cCcceeeE
Q psy1242         264 SVVTV-TANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN----FSQKLRVR  338 (540)
Q Consensus       264 ~~~lv-s~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~----~~~~~~v~  338 (540)
                      +.+.+ +.+.++.|.+|+..+....... ..  .......+.+.+|+.+.++..  ..........+.    +.......
T Consensus        35 g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~--~~~~p~~i~~~~~g~l~v~~~--~~~i~~~d~~~~~~~~~~~~~~~~  109 (270)
T 1rwi_B           35 GNVYVTSEGMYGRVVKLATGSTGTTVLP-FN--GLYQPQGLAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGLNY  109 (270)
T ss_dssp             CCEEEEECSSSCEEEEECC-----EECC-CC--SCCSCCCEEECTTCCEEEEET--TTEEEEECTTCSCCEECCCCSCSS
T ss_pred             CCEEEEccCCCCcEEEecCCCcccceEe-eC--CcCCcceeEECCCCCEEEEcC--CCEEEEEeCCCceEeeeecCCcCC
Confidence            33466 6577889999997653322111 10  012233466777887666542  111111111110    00000012


Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...++++++|+ ++++...++.|.+|+..+.......               ......+.++++++    +|+.+++...
T Consensus       110 p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~p~~i~~~~----~g~l~v~~~~  169 (270)
T 1rwi_B          110 PEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLP---------------FTGLNDPDGVAVDN----SGNVYVTDTD  169 (270)
T ss_dssp             EEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECC---------------CCSCCSCCCEEECT----TCCEEEEEGG
T ss_pred             CcceEECCCCC-EEEEECCCCEEEEEECCCceeEeec---------------cccCCCceeEEEeC----CCCEEEEECC
Confidence            56788899998 6777777889999976544332211               23334678899999    8987777777


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCce
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~  498 (540)
                      ++.|.+|+.....           .......+...+.+++++++|.++++...++.|.+++..+........... ..+.
T Consensus       170 ~~~i~~~~~~~~~-----------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~p~  237 (270)
T 1rwi_B          170 NNRVVKLEAESNN-----------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL-NTPL  237 (270)
T ss_dssp             GTEEEEECTTTCC-----------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSC-SCEE
T ss_pred             CCEEEEEecCCCc-----------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCC-CCce
Confidence            8899999976522           111122333678899999999888888888899999876655444332221 1578


Q ss_pred             EEEEeeCCCEEEE-ecCCeEEEEecCC
Q psy1242         499 SVVMSREGVIVVN-YERGHIAAFTMNG  524 (540)
Q Consensus       499 ~l~fspdg~~l~s-~~dg~I~lw~~~g  524 (540)
                      +++++++|+++++ ..+++|.++++..
T Consensus       238 ~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          238 AVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             eEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            9999999997766 4579999999773

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.08  E-value=3.9e-09  Score=103.83  Aligned_cols=150  Identities=14%  Similarity=0.087  Sum_probs=118.0

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITADCFIASGSADCTVLLWHWNA  429 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~  429 (540)
                      +|++++.|+.|.+||.++|+.+..+               ..+. ..+.+++++|    +|+.++  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~~---------------~~~~~~~~~~~~~~p----dG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWEY---------------PLEKGWECNSVAATK----AGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEEE---------------ECCTTCCCCEEEECT----TSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEEe---------------CCCccCCCcCeEECC----CCCEEE--eCCCCEEEECC-C
Confidence            6899999999999999999999888               4444 4688999999    999888  45788999986 3


Q ss_pred             CcccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCcEEEEecCCCC----CCCceEEEEe
Q psy1242         430 RTQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVSGSQ-LGPVLVHTTFGDLLRSLDPPSG----FASPESVVMS  503 (540)
Q Consensus       430 ~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~~g~~~~~l~~~~~----~~~v~~l~fs  503 (540)
                                 ++.+-.+..+ ...+.++.+.++|+++++.+. ++.+..++.+|+.+..+.....    ...+..+++.
T Consensus        65 -----------G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~  133 (276)
T 3no2_A           65 -----------GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN  133 (276)
T ss_dssp             -----------SCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred             -----------CCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC
Confidence                       3455556554 346889999999999999887 7777777889998887753221    0134567889


Q ss_pred             eCCCEEEEe-cCCeEEEEecCCcEEEeeecC
Q psy1242         504 REGVIVVNY-ERGHIAAFTMNGNRLRHESHN  533 (540)
Q Consensus       504 pdg~~l~s~-~dg~I~lw~~~g~~l~~~~~~  533 (540)
                      ++|.++++. .++.|.+||.+|+.+-.+...
T Consensus       134 ~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~  164 (276)
T 3no2_A          134 KKGNYLVPLFATSEVREIAPNGQLLNSVKLS  164 (276)
T ss_dssp             TTSCEEEEETTTTEEEEECTTSCEEEEEECS
T ss_pred             CCCCEEEEecCCCEEEEECCCCCEEEEEECC
Confidence            999999885 579999999999998887643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.07  E-value=3.7e-09  Score=106.27  Aligned_cols=216  Identities=11%  Similarity=0.057  Sum_probs=129.1

Q ss_pred             CcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCC--CC--ccccccCCCcCc---ceeeEEEEEEE
Q psy1242         272 HQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNN--AP--VPKRHLGDNFSQ---KLRVRHNCFVT  344 (540)
Q Consensus       272 ~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~--~~--~~~~~~~~~~~~---~~~v~~~~~~~  344 (540)
                      .+..+.+|+..++.....        .....+.||+||..++..+...  ..  .....+.+....   .... +..++|
T Consensus        41 ~~~~l~~~d~~~~~~~~l--------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~w  111 (347)
T 2gop_A           41 YENTIVIENLKNNARRFI--------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEW  111 (347)
T ss_dssp             EEEEEEEEETTTCCEEEE--------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEE
T ss_pred             ccceEEEEeCCCCceEEc--------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeE
Confidence            366788888876543222        1123467999997665432211  11  111111110000   0011 577889


Q ss_pred             ecCCCEEEEEEec--------------------------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242         345 TVDSRFLLACGFW--------------------------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT  398 (540)
Q Consensus       345 spdg~~llasgs~--------------------------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt  398 (540)
                      +|||+.|++++..                          ...|.+||+.+++.+..+               .. . .+.
T Consensus       112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l---------------~~-~-~~~  174 (347)
T 2gop_A          112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF---------------EK-P-RFS  174 (347)
T ss_dssp             CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE---------------EE-E-TTC
T ss_pred             CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee---------------cC-C-Ccc
Confidence            9999975444422                          256889999888774555               33 3 788


Q ss_pred             EEEeccCccCCCcEEEEEeCCC-------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         399 CLSRSECNITADCFIASGSADC-------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~Dg-------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      .++|+|    +| .+++++.+.       ...||.+++           ++ ...+..+ ..+..+  +|+|+.|+.++.
T Consensus       175 ~~~~sp----dg-~~~~~~~~~~~~~~~~~~~l~~~d~-----------~~-~~~l~~~-~~~~~~--spdg~~l~~~~~  234 (347)
T 2gop_A          175 SGIWHR----DK-IVVNVPHREIIPQYFKFWDIYIWED-----------GK-EEKMFEK-VSFYAV--DSDGERILLYGK  234 (347)
T ss_dssp             EEEEET----TE-EEEEEECCCSSCCSSCCEEEEEEET-----------TE-EEEEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred             cccCCC----Ce-EEEEEecccccccccccccEEEeCC-----------Cc-eEEeccC-cceeeE--CCCCCEEEEEEc
Confidence            999999    89 777776652       556666552           12 2333344 555554  999998888775


Q ss_pred             CC--------cEEEEeCCCcEEEEecCCCCCCCceE-EEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         472 LG--------PVLVHTTFGDLLRSLDPPSGFASPES-VVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       472 Dg--------~v~iw~~~g~~~~~l~~~~~~~~v~~-l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      ++        .|.+|+ +++.......+..  .+.. ++|+ +| ++++ ..++.+.+| ++ |+......+++.|.++
T Consensus       235 ~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~--~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~  307 (347)
T 2gop_A          235 PEKKYMSEHNKLYIYD-GKEVMGILDEVDR--GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGF  307 (347)
T ss_dssp             CSSSCCCSSCEEEEEC-SSCEEESSTTCCS--EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEE
T ss_pred             cccCCccccceEEEEC-CCceEeccccCCc--ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEee
Confidence            43        566677 6665544444444  5675 8999 88 6666 457888888 76 6654444455555543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.07  E-value=9.8e-09  Score=104.72  Aligned_cols=152  Identities=8%  Similarity=-0.103  Sum_probs=106.1

Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE--eccCccCCCcEEEEE---
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS--RSECNITADCFIASG---  416 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~--~sp~~~~dg~~l~sg---  416 (540)
                      .+|+|||+. |+.++.++.|++||+.+++.....               ..+...+....  ++|    +++.++..   
T Consensus        86 ~~~spdg~~-l~~~~~~~~l~~~d~~~g~~~~~~---------------~~~~~~~~~~~~~~~~----dg~~l~~~~~~  145 (388)
T 3pe7_A           86 GFLSPDDDA-LFYVKDGRNLMRVDLATLEENVVY---------------QVPAEWVGYGTWVANS----DCTKLVGIEIR  145 (388)
T ss_dssp             CEECTTSSE-EEEEETTTEEEEEETTTCCEEEEE---------------ECCTTEEEEEEEEECT----TSSEEEEEEEE
T ss_pred             eEEcCCCCE-EEEEeCCCeEEEEECCCCcceeee---------------echhhcccccceeECC----CCCeecccccc
Confidence            358999997 577778899999999998876665               44445454443  478    88888743   


Q ss_pred             -------------------eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCC---
Q psy1242         417 -------------------SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLG---  473 (540)
Q Consensus       417 -------------------s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg---  473 (540)
                                         +.+..|.+||+.++            ....+..+...+..++|+| +|+.|+.++.++   
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~  213 (388)
T 3pe7_A          146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDL  213 (388)
T ss_dssp             GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTT
T ss_pred             CcccccccccchhhhhhccCCcceEEEEECCCC------------ceEEeecCCccccccEECCCCCCEEEEEEecCCCC
Confidence                               24467888887752            2344556777899999999 999988877643   


Q ss_pred             ---cEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ec--C---CeEEEEecCCc
Q psy1242         474 ---PVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YE--R---GHIAAFTMNGN  525 (540)
Q Consensus       474 ---~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~--d---g~I~lw~~~g~  525 (540)
                         .|.+++..+...+.+..+.....+..++|+|||+.|+. +.  +   ..|.+|++.+.
T Consensus       214 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          214 VDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             SSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             CcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence               56666666665566655442113678899999997765 22  1   23999999843

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.06  E-value=3.9e-09  Score=116.27  Aligned_cols=159  Identities=13%  Similarity=0.055  Sum_probs=103.1

Q ss_pred             EEEEEEecCCCEEEEEEecC--------CcEEEEEcc-CC---eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         339 HNCFVTTVDSRFLLACGFWD--------NSFRVFSTD-NA---RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~D--------gsv~iwd~~-~g---~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                      +..++|||||++| +.++++        ..|++||+. +|   +.....               .+|...+..++|+|  
T Consensus       190 ~~~~~~SpDG~~l-a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~---------------~~~~~~~~~~~~sp--  251 (662)
T 3azo_A          190 VTGPRLSPDGRQA-VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL---------------GGPEEAIAQAEWAP--  251 (662)
T ss_dssp             ECCCEECTTSSEE-EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE---------------EETTBCEEEEEECT--
T ss_pred             ccCceECCCCCEE-EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC---------------CCCCceEcceEECC--
Confidence            4567899999974 555544        379999998 56   333333               45678899999999  


Q ss_pred             cCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCC--------EEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         407 ITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQP--------VTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       407 ~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~--------V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                        ||+++++++.++..+||.++...         ++......++...        +.+++|+++++++++++. +.++||
T Consensus       252 --dg~l~~~~~~~~~~~l~~~~~~~---------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~  319 (662)
T 3azo_A          252 --DGSLIVATDRTGWWNLHRVDPAT---------GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG  319 (662)
T ss_dssp             --TSCEEEEECTTSSCEEEEECTTT---------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred             --CCeEEEEECCCCCeEEEEEECCC---------CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence              99988888888855555554311         1222222222221        467899999999999998 999998


Q ss_pred             --eCCCcEEEEecCCCCCCCceEEEEeeCCCEEE--Eec-CC--eEEEEecCCcEEEee
Q psy1242         479 --TTFGDLLRSLDPPSGFASPESVVMSREGVIVV--NYE-RG--HIAAFTMNGNRLRHE  530 (540)
Q Consensus       479 --~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~--s~~-dg--~I~lw~~~g~~l~~~  530 (540)
                        +..+..++.+..+..  .+..+ +++++..++  +++ +.  .|.++++++..+..+
T Consensus       320 ~~d~~~~~~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          320 ILDPESGELVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             EEETTTTEEEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             EEECCCCcEEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence              555555788877765  45555 155665443  333 32  466667764444333

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.03  E-value=3.1e-08  Score=110.17  Aligned_cols=233  Identities=11%  Similarity=-0.016  Sum_probs=139.2

Q ss_pred             ceeeecCCcEEEE-----EccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC---------
Q psy1242         256 TYVTLHMPSVVTV-----TANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP---------  321 (540)
Q Consensus       256 ~~~~~~~~~~~lv-----s~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~---------  321 (540)
                      ..+.+++++..++     +++.+.+|++||..++.... ..+...+.  ...+.|++|+..++.++.....         
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            3345555555555     56667899999998866431 11111111  1457899999766654332210         


Q ss_pred             ---ccccccCCCcCcce--------eeEEEEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeee
Q psy1242         322 ---VPKRHLGDNFSQKL--------RVRHNCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRI  386 (540)
Q Consensus       322 ---~~~~~~~~~~~~~~--------~v~~~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~  386 (540)
                         ...+.+........        ......+++||||++|+++. .++    .|.+++..+++.. .+           
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~~~l~~~~~~~~~~~-~l-----------  267 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI-LRGWSENDVYWKRPGEKDFR-LL-----------  267 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE-EETTTEEEEEEECTTCSSCE-EE-----------
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE-eCCCCceEEEEEcCCCCceE-Ee-----------
Confidence               12222322211100        12356788999999865444 444    5666666555433 33           


Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEe---CCCcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcC
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGS---ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISA  461 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs---~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~sp  461 (540)
                          ..+.+.+....+ +    +|.+++++.   .++.|.+||+.+...         .....+..|  ...+..++++ 
T Consensus       268 ----~~~~~~~~~~~~-~----~g~l~~~s~~~~~~~~l~~~d~~~~~~---------~~~~~l~~~~~~~~l~~~~~~-  328 (695)
T 2bkl_A          268 ----VKGVGAKYEVHA-W----KDRFYVLTDEGAPRQRVFEVDPAKPAR---------ASWKEIVPEDSSASLLSVSIV-  328 (695)
T ss_dssp             ----EECSSCCEEEEE-E----TTEEEEEECTTCTTCEEEEEBTTBCSG---------GGCEEEECCCSSCEEEEEEEE-
T ss_pred             ----ecCCCceEEEEe-c----CCcEEEEECCCCCCCEEEEEeCCCCCc---------cCCeEEecCCCCCeEEEEEEE-
Confidence                345555666666 5    566444444   257899999765221         012333333  4467888888 


Q ss_pred             CCCEEEEEeCCCcEEEE--eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-e-c---CCeEEEEecCC
Q psy1242         462 ELGLVVSGSQLGPVLVH--TTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-Y-E---RGHIAAFTMNG  524 (540)
Q Consensus       462 dg~~lasgs~Dg~v~iw--~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~-~---dg~I~lw~~~g  524 (540)
                      ++.++++...|+..+||  +.+|+.++.+..+... .+..++++|++..++. . +   .++|++||+.+
T Consensus       329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG-AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS-EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe-EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            67788999999999887  4467777777765221 4677889999987764 2 2   37899999874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.03  E-value=1.8e-08  Score=99.30  Aligned_cols=154  Identities=16%  Similarity=0.080  Sum_probs=109.3

Q ss_pred             EEEEEecCCCEEEEE----Eec-------------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242         340 NCFVTTVDSRFLLAC----GFW-------------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR  402 (540)
Q Consensus       340 ~~~~~spdg~~llas----gs~-------------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~  402 (540)
                      ..++++|+|+ ++++    |..             .+.|..++.. ++. ..+               ..+......++|
T Consensus       118 ~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~---------------~~~~~~~~gi~~  179 (296)
T 3e5z_A          118 NDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAP---------------IRDRVKPNGLAF  179 (296)
T ss_dssp             CCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEE---------------ECCCSSEEEEEE
T ss_pred             CCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEe---------------ecCCCCCccEEE
Confidence            4567799998 4565    321             2345555544 443 333               356667889999


Q ss_pred             ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcc---eEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTP---RATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~---~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      +|    +|+.+++.+.++.|.+|++.. .         ++.   ...+..+...+.+++++++|.++++.  ++.|.+|+
T Consensus       180 s~----dg~~lv~~~~~~~i~~~~~~~-~---------g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~  243 (296)
T 3e5z_A          180 LP----SGNLLVSDTGDNATHRYCLNA-R---------GETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT  243 (296)
T ss_dssp             CT----TSCEEEEETTTTEEEEEEECS-S---------SCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred             CC----CCCEEEEeCCCCeEEEEEECC-C---------CcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence            99    999888888889999999862 1         111   22333355567789999999977766  78899999


Q ss_pred             CCCcEEEEecCCCCCCCceEEEE-eeCCCEEEEecCCeEEEEecCCcEEEee
Q psy1242         480 TFGDLLRSLDPPSGFASPESVVM-SREGVIVVNYERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       480 ~~g~~~~~l~~~~~~~~v~~l~f-spdg~~l~s~~dg~I~lw~~~g~~l~~~  530 (540)
                      .+|+.+..+..+..   +.+++| +|+++.|+.++.+.+.-++++.+.|...
T Consensus       244 ~~g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~~  292 (296)
T 3e5z_A          244 PDGDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEHH  292 (296)
T ss_dssp             TTSCEEEEEECSSC---CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC-
T ss_pred             CCCCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCeEEEEEccccccccc
Confidence            88999888877664   689999 5899988887777777778776666544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.00  E-value=4.2e-09  Score=107.52  Aligned_cols=156  Identities=10%  Similarity=-0.007  Sum_probs=107.2

Q ss_pred             EEEecCCCEEEEEEecCCc--EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         342 FVTTVDSRFLLACGFWDNS--FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgs--v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      .+|+|||++|++++..++.  |.+||+.+++..+..               .++...+.+++|+|    ||+.|+.++.+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt---------------~~~~~~~~~~~~sp----dg~~l~~~~~~  101 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT---------------EGRGDNTFGGFLSP----DDDALFYVKDG  101 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC---------------CSSCBCSSSCEECT----TSSEEEEEETT
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee---------------eCCCCCccceEEcC----CCCEEEEEeCC
Confidence            4679999985444443674  888899888876655               55666666778999    99999999999


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEE--EcCCCCEEEEEe----------------------CCCcE
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVA--ISAELGLVVSGS----------------------QLGPV  475 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~--~spdg~~lasgs----------------------~Dg~v  475 (540)
                      +.|.+||+.+.           +....+..+...+....  ++++++.++...                      .+..|
T Consensus       102 ~~l~~~d~~~g-----------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A          102 RNLMRVDLATL-----------EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             TEEEEEETTTC-----------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CeEEEEECCCC-----------cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            99999998763           33344444555454333  489999887432                      33567


Q ss_pred             EEEeC-CCcEEEEecCCCCCCCceEEEEee-CCCEEEEec-------CCeEEEEecCCcEEEee
Q psy1242         476 LVHTT-FGDLLRSLDPPSGFASPESVVMSR-EGVIVVNYE-------RGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       476 ~iw~~-~g~~~~~l~~~~~~~~v~~l~fsp-dg~~l~s~~-------dg~I~lw~~~g~~l~~~  530 (540)
                      .+|+. +|+. ..+..+..  .+..++|+| +|+.|+...       ...|.+++++|..+..+
T Consensus       171 ~~~d~~~g~~-~~l~~~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l  231 (388)
T 3pe7_A          171 MRVDLKTGES-TVILQENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV  231 (388)
T ss_dssp             EEEETTTCCE-EEEEEESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred             EEEECCCCce-EEeecCCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence            77776 5554 34433444  578999999 999887632       23688888876544433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.99  E-value=8.2e-08  Score=106.96  Aligned_cols=233  Identities=11%  Similarity=-0.020  Sum_probs=144.2

Q ss_pred             eeeecCCcEEEEEccC-----cceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCeeeccCCCCC----------
Q psy1242         257 YVTLHMPSVVTVTANH-----QFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPILTHPTSNNNA----------  320 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~-----D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~----------  320 (540)
                      .+.+++++..++.++.     ..+|++||+.++..... ....     ....+.|++|+..++.++....          
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-----~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~  203 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-----KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-----CSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-----ccceEEEEeCCCEEEEEEECCccccccccccc
Confidence            3455555544554332     23899999987664321 1111     1235789999976554432221          


Q ss_pred             -----CccccccCCCcCcce--------eeEEEEEEEecCCCEEEEEEec----CCcEEEEEccC------Ce-EEEEEe
Q psy1242         321 -----PVPKRHLGDNFSQKL--------RVRHNCFVTTVDSRFLLACGFW----DNSFRVFSTDN------AR-IVQIIF  376 (540)
Q Consensus       321 -----~~~~~~~~~~~~~~~--------~v~~~~~~~spdg~~llasgs~----Dgsv~iwd~~~------g~-~~~~l~  376 (540)
                           ....+.++.......        ......+.|||||++|+++...    +..|.+||+.+      +. ....+ 
T Consensus       204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l-  282 (710)
T 2xdw_A          204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL-  282 (710)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE-
T ss_pred             cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe-
Confidence                 022223322211101        1124577899999986555431    56899999986      53 34444 


Q ss_pred             cccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcEEEEEcCCCcccccCCCCCCcceEEeccCCC
Q psy1242         377 GHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ  452 (540)
Q Consensus       377 ~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~  452 (540)
                                    ..+.+.+.. .|+|    +|+.|+..+.+    +.|.+||+.....         .....+..|..
T Consensus       283 --------------~~~~~~~~~-~~s~----dg~~l~~~s~~~~~~~~l~~~d~~~~~~---------~~~~~l~~~~~  334 (710)
T 2xdw_A          283 --------------IDNFEGEYD-YVTN----EGTVFTFKTNRHSPNYRLINIDFTDPEE---------SKWKVLVPEHE  334 (710)
T ss_dssp             --------------ECSSSSCEE-EEEE----ETTEEEEEECTTCTTCEEEEEETTSCCG---------GGCEEEECCCS
T ss_pred             --------------eCCCCcEEE-EEec----cCCEEEEEECCCCCCCEEEEEeCCCCCc---------ccceeccCCCC
Confidence                          455555555 4788    78877666543    3688898765210         12345555544


Q ss_pred             --CEEEEEEcCCCCEEEEEeCCCcEEE--EeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe--c---CCeEEEEec
Q psy1242         453 --PVTSVAISAELGLVVSGSQLGPVLV--HTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--E---RGHIAAFTM  522 (540)
Q Consensus       453 --~V~~v~~spdg~~lasgs~Dg~v~i--w~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~---dg~I~lw~~  522 (540)
                        .+..++|++++.++++...|+..+|  |+. +|+.++.+..+.+  .+..++++|++..++..  +   .++|.+||+
T Consensus       335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~--~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVG--SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSS--EEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCc--eEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence              6888999988888899999997655  565 7888888887755  67889999999866642  2   478999998


Q ss_pred             C-Cc
Q psy1242         523 N-GN  525 (540)
Q Consensus       523 ~-g~  525 (540)
                      . |+
T Consensus       413 ~tg~  416 (710)
T 2xdw_A          413 TKEE  416 (710)
T ss_dssp             TSSS
T ss_pred             CCCc
Confidence            7 44

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.97  E-value=1.1e-08  Score=102.87  Aligned_cols=226  Identities=8%  Similarity=-0.023  Sum_probs=137.3

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC-----CcCcce---
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD-----NFSQKL---  335 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~-----~~~~~~---  335 (540)
                      ..+.++.+.+++|.+||..+.+.......    ......+.+++|+.+.++....... .......     ......   
T Consensus        54 ~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v-~~iD~~t~~~~~~i~~g~~~~  128 (328)
T 3dsm_A           54 GIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRI-FIINPKTYEITGYIECPDMDM  128 (328)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEE-EEEETTTTEEEEEEECTTCCT
T ss_pred             CEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeE-EEEECCCCeEEEEEEcCCccc
Confidence            33455666788999999987665433211    1222346676777665544111111 1110000     000000   


Q ss_pred             -eeEEEEEEEecCCCEEEEEEe-cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         336 -RVRHNCFVTTVDSRFLLACGF-WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       336 -~v~~~~~~~spdg~~llasgs-~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                       ......+++  ++..++++.. .+++|.++|..+++.+..+               .. ......++++|    +|+++
T Consensus       129 ~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i---------------~~-g~~p~~i~~~~----dG~l~  186 (328)
T 3dsm_A          129 ESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL---------------TI-GIQPTSLVMDK----YNKMW  186 (328)
T ss_dssp             TTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE---------------EC-SSCBCCCEECT----TSEEE
T ss_pred             cCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE---------------Ec-CCCccceEEcC----CCCEE
Confidence             001223444  4555666665 4899999999999988777               22 23456788999    89877


Q ss_pred             EEEeCC----------CcEEEEEcCCCcccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C
Q psy1242         414 ASGSAD----------CTVLLWHWNARTQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVSGSQLGPVLVHTT-F  481 (540)
Q Consensus       414 ~sgs~D----------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~  481 (540)
                      +++..+          +.|.++|..+           .+....+.-. ......++++|+++.+..+..  .|.+++. +
T Consensus       187 v~~~~~~~~~~~~~~~~~v~~id~~t-----------~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          187 TITDGGYEGSPYGYEAPSLYRIDAET-----------FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA  253 (328)
T ss_dssp             EEBCCBCTTCSSCBCCCEEEEEETTT-----------TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred             EEECCCccCCccccCCceEEEEECCC-----------CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence            776655          7899999765           2333344321 236789999999998887765  7777765 5


Q ss_pred             CcEEE-E-ecCCCCCCCceEEEEee-CCCEEEEe-----cCCeEEEEecCCcEEEeee
Q psy1242         482 GDLLR-S-LDPPSGFASPESVVMSR-EGVIVVNY-----ERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       482 g~~~~-~-l~~~~~~~~v~~l~fsp-dg~~l~s~-----~dg~I~lw~~~g~~l~~~~  531 (540)
                      ++... . +.....  .+..++++| ++.+.++.     .++.|.+|+++|+.+.++.
T Consensus       254 ~~~~~~~~~~~~~~--~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~  309 (328)
T 3dsm_A          254 DRVPVRPFLEFRDT--KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY  309 (328)
T ss_dssp             SSCCSSCSBCCCSS--CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred             CceeeeeeecCCCC--ceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence            55431 1 111122  578999999 55555554     3689999999999988875

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.95  E-value=1.2e-07  Score=94.63  Aligned_cols=225  Identities=13%  Similarity=0.051  Sum_probs=131.7

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCC---CCccccccCCC-c--
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNN---APVPKRHLGDN-F--  331 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~---~~~~~~~~~~~-~--  331 (540)
                      .+.+++.+.+++..++.|.+|++.++...... .+.    .....+.+++|+.+.+++....   ........... .  
T Consensus        51 ~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~  126 (333)
T 2dg1_A           51 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  126 (333)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC----CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence            33445556777788899999998765533221 111    1223466788887766543220   11111111100 0  


Q ss_pred             --C-cceeeEEEEEEEecCCCEEEEEEec------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe
Q psy1242         332 --S-QKLRVRHNCFVTTVDSRFLLACGFW------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR  402 (540)
Q Consensus       332 --~-~~~~v~~~~~~~spdg~~llasgs~------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~  402 (540)
                        . ......+.+++++|+|+. +++...      .+.|..++..+++... +               ..+...+.+++|
T Consensus       127 ~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~---------------~~~~~~~~~i~~  189 (333)
T 2dg1_A          127 IIEDLSTAYCIDDMVFDSKGGF-YFTDFRGYSTNPLGGVYYVSPDFRTVTP-I---------------IQNISVANGIAL  189 (333)
T ss_dssp             EECSSSSCCCEEEEEECTTSCE-EEEECCCBTTBCCEEEEEECTTSCCEEE-E---------------EEEESSEEEEEE
T ss_pred             EEccCccCCcccceEECCCCCE-EEEeccccccCCCceEEEEeCCCCEEEE-e---------------ecCCCcccceEE
Confidence              0 011123678888999984 555543      2456666655444432 2               223345789999


Q ss_pred             ccCccCCCcEE-EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy1242         403 SECNITADCFI-ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF  481 (540)
Q Consensus       403 sp~~~~dg~~l-~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~  481 (540)
                      +|    +|+.| ++.+.++.|.+|+......... . ........+.++ ..+.+++++++|.++++...++.|.+|+.+
T Consensus       190 ~~----dg~~l~v~~~~~~~i~~~d~~~~g~~~~-~-~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          190 ST----DEKVLWVTETTANRLHRIALEDDGVTIQ-P-FGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             CT----TSSEEEEEEGGGTEEEEEEECTTSSSEE-E-EEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CC----CCCEEEEEeCCCCeEEEEEecCCCcCcc-c-ccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            99    88855 4555688999999853110000 0 000001112233 467889999999988888888999999888


Q ss_pred             CcEEEEecCCCCC----CCceEEEEeeCCCEEEE
Q psy1242         482 GDLLRSLDPPSGF----ASPESVVMSREGVIVVN  511 (540)
Q Consensus       482 g~~~~~l~~~~~~----~~v~~l~fspdg~~l~s  511 (540)
                      ++.+..+..+...    ..+.+++|+|+|+.|+.
T Consensus       263 g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v  296 (333)
T 2dg1_A          263 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  296 (333)
T ss_dssp             SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             CCEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence            8888777654320    03689999999876654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.95  E-value=5.1e-08  Score=97.42  Aligned_cols=156  Identities=7%  Similarity=0.087  Sum_probs=108.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..+++|+++|+ |++++..++.|.+||..+++.....               ..+...+.+++++|    +|++++++..
T Consensus        47 ~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~---------------~~~~~~~~~i~~~~----dg~l~v~~~~  106 (333)
T 2dg1_A           47 LEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPF---------------VSHKANPAAIKIHK----DGRLFVCYLG  106 (333)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEE---------------ECSSSSEEEEEECT----TSCEEEEECT
T ss_pred             ccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEEe---------------eCCCCCcceEEECC----CCcEEEEeCC
Confidence            35678899998 6788888999999999888765444               34567899999999    8988887776


Q ss_pred             C----CcEEEEEcCCCcccccCCCCCCcceEEec--cCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCcEEE
Q psy1242         419 D----CTVLLWHWNARTQSIVGETDTPTPRATLT--GHEQPVTSVAISAELGLVVSGSQ------LGPVLVHTTFGDLLR  486 (540)
Q Consensus       419 D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~~spdg~~lasgs~------Dg~v~iw~~~g~~~~  486 (540)
                      +    +.|.+||..+..           ....+.  .+...+.+++++|+|+++++...      .+.|..++..+..+.
T Consensus       107 ~~~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~  175 (333)
T 2dg1_A          107 DFKSTGGIFAATENGDN-----------LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT  175 (333)
T ss_dssp             TSSSCCEEEEECTTSCS-----------CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred             CCCCCceEEEEeCCCCE-----------EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence            6    689999876522           111222  24467899999999998877654      244544555432222


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEec--CCcEE
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTM--NGNRL  527 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~--~g~~l  527 (540)
                      .+.....  .+..++|+|+|+.|+.+  .++.|.+|++  +|+.+
T Consensus       176 ~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~  218 (333)
T 2dg1_A          176 PIIQNIS--VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI  218 (333)
T ss_dssp             EEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE
T ss_pred             EeecCCC--cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc
Confidence            2322222  46889999999866543  3689999998  45443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.92  E-value=4.4e-08  Score=100.00  Aligned_cols=173  Identities=9%  Similarity=0.044  Sum_probs=112.6

Q ss_pred             EEEEecCCCEEEEEEe---------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         341 CFVTTVDSRFLLACGF---------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       341 ~~~~spdg~~llasgs---------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      .++++|||++++++..         .+++|.+||..+++.+..+......         ..+......++++|    ||+
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~---------~~~g~~p~~i~~sp----dg~  120 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR---------VQGLNYDGLFRQTT----DGK  120 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------CCBCCCGGGEEECT----TSS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------cccCCCcceEEECC----CCC
Confidence            6789999998665543         3678999999999988877311000         01234566789999    999


Q ss_pred             EEEEEeC--CCcEEEEEcCCCccccc----CC----------------------------CCCCcce-------------
Q psy1242         412 FIASGSA--DCTVLLWHWNARTQSIV----GE----------------------------TDTPTPR-------------  444 (540)
Q Consensus       412 ~l~sgs~--DgtV~lWd~~~~~~~~~----~~----------------------------~~~~~~~-------------  444 (540)
                      +|+++..  +++|.+||+.+......    +.                            ...++..             
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            9988864  57899999765321100    00                            0001110             


Q ss_pred             -----------------------EEeccCCCC--E------------------E---EEEEcCCCCEEEEEeC-------
Q psy1242         445 -----------------------ATLTGHEQP--V------------------T---SVAISAELGLVVSGSQ-------  471 (540)
Q Consensus       445 -----------------------~~l~~h~~~--V------------------~---~v~~spdg~~lasgs~-------  471 (540)
                                             ..+.-....  +                  .   .++++|+++.++.+..       
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence                                   000000000  0                  0   1678888776665532       


Q ss_pred             ----CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-C--cEEEee
Q psy1242         472 ----LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-G--NRLRHE  530 (540)
Q Consensus       472 ----Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g--~~l~~~  530 (540)
                          +++|.+|+. +++.+.++..+.    +.+++|+|+|++|+++.++.|.+||.. |  +.+..+
T Consensus       281 ~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEE
T ss_pred             ccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEe
Confidence                346888766 888999988765    589999999999988666999999987 7  777775

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.91  E-value=1.1e-07  Score=93.76  Aligned_cols=222  Identities=10%  Similarity=0.044  Sum_probs=133.0

Q ss_pred             ccCcceEEEEcCCCCCcccCCCC-cCCCCCCCCCccccCC-CCeeeccCCCCCCcccc-------cc-CCCcCcceeeEE
Q psy1242         270 ANHQFAINRWNPDYAASIQSPSY-AETPGSPPGNLPLTLD-PILTHPTSNNNAPVPKR-------HL-GDNFSQKLRVRH  339 (540)
Q Consensus       270 ~s~D~tv~~W~~~~~~~~~~~~~-~~~v~~~~~~~~~s~D-~~l~~~g~~~~~~~~~~-------~~-~~~~~~~~~v~~  339 (540)
                      ...++.|.+|++.++.......- ..........+.+.+| +.+.+++...  .....       .+ ............
T Consensus        42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~--~l~~~d~~g~~~~~~~~~~~~~~~~~~  119 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL--GLLVVQTDGTFEEIAKKDSEGRRMQGC  119 (314)
T ss_dssp             TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT--EEEEEETTSCEEECCSBCTTSCBCBCC
T ss_pred             CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC--CEEEEeCCCCEEEEEeccCCCccccCC
Confidence            56778999999766543221110 0000111224567777 7666544211  11111       11 100001111235


Q ss_pred             EEEEEecCCCEEEEEEecC---------------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec-
Q psy1242         340 NCFVTTVDSRFLLACGFWD---------------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS-  403 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~D---------------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s-  403 (540)
                      .++++.++|+ ++++...+               +.|..++.. ++.....                .+......++++ 
T Consensus       120 ~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----------------~~~~~~~~i~~~~  181 (314)
T 1pjx_A          120 NDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD----------------TAFQFPNGIAVRH  181 (314)
T ss_dssp             CEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE----------------EEESSEEEEEEEE
T ss_pred             cCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec----------------cCCCCcceEEEec
Confidence            6788899998 45565444               467777765 5543322                233456789999 


Q ss_pred             ---cCccCCCcEEEE-EeCCCcEEEEEcCC-CcccccCCCCCCcceEEeccCC-CCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy1242         404 ---ECNITADCFIAS-GSADCTVLLWHWNA-RTQSIVGETDTPTPRATLTGHE-QPVTSVAISAELGLVVSGSQLGPVLV  477 (540)
Q Consensus       404 ---p~~~~dg~~l~s-gs~DgtV~lWd~~~-~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~~spdg~~lasgs~Dg~v~i  477 (540)
                         |    +++.|.. ...++.|.+|+... ....      .......+.++. ..+..++++++|.++++...++.|.+
T Consensus       182 ~~d~----dg~~l~v~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          182 MNDG----RPYQLIVAETPTKKLWSYDIKGPAKIE------NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             CTTS----CEEEEEEEETTTTEEEEEEEEETTEEE------EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ccCC----CCCEEEEEECCCCeEEEEECCCCCccc------cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence               9    8866544 45688999999752 1100      001223344444 56788999999999888888889998


Q ss_pred             EeCC-CcEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242         478 HTTF-GDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       478 w~~~-g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~  523 (540)
                      |+.. ++.+..+..+..  .+.+++|+++|+.|+.+  .++.|..|+++
T Consensus       252 ~d~~~g~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          252 FGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EcCCCCcEeEEEeCCCC--CceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            9775 777777766654  67999999999955543  35699999976

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.89  E-value=2.9e-08  Score=101.98  Aligned_cols=154  Identities=9%  Similarity=-0.036  Sum_probs=105.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+++++... ++++|+.+ .+++|++++.+....  .....  .+.... ..+.. |+.|+|      |+++|+++ .
T Consensus        40 ~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~--~~~~~--~~~~~~-~~lp~-V~~l~f------d~~~L~v~-~  104 (388)
T 1xip_A           40 LQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHIT--SDSTP--LTFKWE-KEIPD-VIFVCF------HGDQVLVS-T  104 (388)
T ss_dssp             CBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHH--SSSCC--CCCSEE-EECTT-EEEEEE------ETTEEEEE-E
T ss_pred             ccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhc--ccccc--ccceEE-eeCCC-eeEEEE------CCCEEEEE-c
Confidence            67788899998 57788776 566798764430000  00000  000000 23556 999999      36788888 8


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      ++.|++||++...           .......|...+.++.+.+.  -+++++.||.+.+|+. +++... +   ..  .|
T Consensus       105 ~~~l~v~dv~sl~-----------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~---~~--~V  165 (388)
T 1xip_A          105 RNALYSLDLEELS-----------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L---AQ--NV  165 (388)
T ss_dssp             SSEEEEEESSSTT-----------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E---EE--SE
T ss_pred             CCcEEEEEchhhh-----------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c---cC--Cc
Confidence            8999999987632           22345567777888777654  3888999999999987 455543 2   22  68


Q ss_pred             eEEEEeeCCCEEEEecCCeEEEEecCCcEE
Q psy1242         498 ESVVMSREGVIVVNYERGHIAAFTMNGNRL  527 (540)
Q Consensus       498 ~~l~fspdg~~l~s~~dg~I~lw~~~g~~l  527 (540)
                      .+++|||+| .++...||.+++|++++..+
T Consensus       166 s~v~WSpkG-~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          166 TSFDVTNSQ-LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             EEEEECSSE-EEEEETTSCEEEEEEETTEE
T ss_pred             eEEEEcCCc-eEEEEcCCcEEEEcCCCccc
Confidence            999999999 55556789999999997663

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.88  E-value=8.4e-08  Score=106.87  Aligned_cols=157  Identities=7%  Similarity=0.029  Sum_probs=107.8

Q ss_pred             EEEEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ....++|||||++|+.+.+.+|    .|++||+.+|+.....               ..+ ..+.+++|+|    ||+.|
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~---------------~~~-~~~~~~~wsp----Dg~~l  185 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV---------------LER-VKFSCMAWTH----DGKGM  185 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE---------------EEE-ECSCCEEECT----TSSEE
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc---------------ccC-cccceEEEEe----CCCEE
Confidence            4567889999997544444344    8999999999876543               112 2367899999    99999


Q ss_pred             EEEeCCCc----------------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-----C
Q psy1242         414 ASGSADCT----------------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-----L  472 (540)
Q Consensus       414 ~sgs~Dgt----------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-----D  472 (540)
                      +.++.++.                |.+|++.+....       ...+.....|...+..++|||||++|+.++.     +
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~-------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  258 (710)
T 2xdw_A          186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE-------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV  258 (710)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG-------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred             EEEEECCccccccccccccCCCCEEEEEECCCCccc-------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence            99988876                999998763311       0122222335667889999999999887765     4


Q ss_pred             CcEEEEeCC-------Cc-EEEEecCCCCCCCceEEEEeeCCCEEEE-ec----CCeEEEEecCC
Q psy1242         473 GPVLVHTTF-------GD-LLRSLDPPSGFASPESVVMSREGVIVVN-YE----RGHIAAFTMNG  524 (540)
Q Consensus       473 g~v~iw~~~-------g~-~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~----dg~I~lw~~~g  524 (540)
                      ..|.+|+..       +. ....+..+..  .+.. .|+++|+.|+. +.    .+.|.+|++++
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~  320 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNFE--GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD  320 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSSS--SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             cEEEEEECcccccccCCccceEEeeCCCC--cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            567777653       42 3555655554  2333 58899987775 32    34699999874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.86  E-value=4e-08  Score=100.12  Aligned_cols=164  Identities=7%  Similarity=-0.110  Sum_probs=100.5

Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-eeEEEeeccCcce-----EEEEeccCccCCCcEEEE
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-RIVQIIFGHYGVV-----TCLSRSECNITADCFIAS  415 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-~~~~~l~~h~~~V-----t~l~~sp~~~~dg~~l~s  415 (540)
                      ..|+|||++ |+.++.++.|.+||+.+++.......+...... +.+.  .......     ..++|+|    +++.++.
T Consensus        86 ~~~spdg~~-l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~--~~~~~~~~~~~~~~~~~sp----dg~~~~~  158 (396)
T 3c5m_A           86 GFISTDERA-FFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVA--NSDCTKLVGIEILKRDWQP----LTSWEKF  158 (396)
T ss_dssp             CEECTTSSE-EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEE--CTTSSEEEEEEEEGGGCCC----CCSHHHH
T ss_pred             ceECCCCCE-EEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEE--eccCCccccccccccccCC----CCcceee
Confidence            367999996 577777889999999988766555322221100 0000  0000000     0135677    7776655


Q ss_pred             E-----eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCC------cEEEEeCCCc
Q psy1242         416 G-----SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLG------PVLVHTTFGD  483 (540)
Q Consensus       416 g-----s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg------~v~iw~~~g~  483 (540)
                      +     ..+..|.+||+.++           +. ..+..+...+..+.|+| +++.|+.++.++      .|.+++..+.
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g-----------~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~  226 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETG-----------EL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS  226 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTC-----------CE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred             eeeccCCCcceEEEEECCCC-----------cE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence            4     45678889997652           22 33335677899999999 788777766543      4666776555


Q ss_pred             EEEEecCCCCCCCceEEEEeeCCCEEEEe-cC-----CeEEEEecCC
Q psy1242         484 LLRSLDPPSGFASPESVVMSREGVIVVNY-ER-----GHIAAFTMNG  524 (540)
Q Consensus       484 ~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~d-----g~I~lw~~~g  524 (540)
                      ....+..+.....+..++|+|+|+.|+.. .+     +.|.+|++.+
T Consensus       227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          227 NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            44555443211146788999999977653 22     3499999874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.83  E-value=2.5e-08  Score=101.67  Aligned_cols=151  Identities=12%  Similarity=-0.059  Sum_probs=92.6

Q ss_pred             EEEEEEec-CCCEEEEEEecC------CcEEEEEccCCeEEEEEecccceeeeeeEEEeecc--CcceEEEEeccCccCC
Q psy1242         339 HNCFVTTV-DSRFLLACGFWD------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH--YGVVTCLSRSECNITA  409 (540)
Q Consensus       339 ~~~~~~sp-dg~~llasgs~D------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h--~~~Vt~l~~sp~~~~d  409 (540)
                      +..++|+| +++.|+++. .+      ..|.+|++..++.. .+               ..+  ...+..++|+|    +
T Consensus       190 ~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~-~l---------------~~~~~~~~~~~~~~sp----d  248 (396)
T 3c5m_A          190 LGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVR-KI---------------KEHAEGESCTHEFWIP----D  248 (396)
T ss_dssp             EEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCE-ES---------------SCCCTTEEEEEEEECT----T
T ss_pred             cccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCcee-Ee---------------eccCCCccccceEECC----C
Confidence            56778899 787654443 23      46888888755533 22               222  23578899999    9


Q ss_pred             CcEEEEEeCC-----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEe-------------
Q psy1242         410 DCFIASGSAD-----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGS-------------  470 (540)
Q Consensus       410 g~~l~sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs-------------  470 (540)
                      |++|+.++.+     +.|.+||+.++.           . ..+..... .. ++|+| +|+++++++             
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~-----------~-~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          249 GSAMAYVSYFKGQTDRVIYKANPETLE-----------N-EEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECTTTCC-----------E-EEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred             CCEEEEEecCCCCccceEEEEECCCCC-----------e-EEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence            9988777654     459999986532           1 11211111 23 88999 999888765             


Q ss_pred             ---CCCcEEEEeC-CCcEEEEecCCCCCC---------CceEEEEeeCCCEEEEec--CCe--EEEEecCCc
Q psy1242         471 ---QLGPVLVHTT-FGDLLRSLDPPSGFA---------SPESVVMSREGVIVVNYE--RGH--IAAFTMNGN  525 (540)
Q Consensus       471 ---~Dg~v~iw~~-~g~~~~~l~~~~~~~---------~v~~l~fspdg~~l~s~~--dg~--I~lw~~~g~  525 (540)
                         .++.|.+|+. +++. ..+..+....         .+..++|+|+|+.|+..+  ++.  |.++++++.
T Consensus       315 ~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             ccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence               2367888876 4443 3343333200         145689999999887642  344  555555543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.82  E-value=7.6e-08  Score=96.53  Aligned_cols=147  Identities=10%  Similarity=-0.002  Sum_probs=95.7

Q ss_pred             EEEEEEecCCCEEEEEEecC--C--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWD--N--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~D--g--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      +.+++|||||++|+++...+  +  .|.+|++.+++.....               . +.. +.+++|+|    ||+.|+
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---------------~-~~~-~~~~~wsp----dg~~l~  119 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---------------E-AKN-IRSLEWNE----DSRKLL  119 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE---------------E-ESE-EEEEEECT----TSSEEE
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE---------------c-CCC-ccceeECC----CCCEEE
Confidence            56778999999754443322  3  3778888887765544               2 233 89999999    999988


Q ss_pred             EEeCC---------------------------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEE
Q psy1242         415 SGSAD---------------------------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVV  467 (540)
Q Consensus       415 sgs~D---------------------------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la  467 (540)
                      .++.+                           ..|.+||+.++           +.+..+.. . .+..++|+|+| +++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-----------~~~~~l~~-~-~~~~~~~spdg-~~~  185 (347)
T 2gop_A          120 IVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-----------EVIEEFEK-P-RFSSGIWHRDK-IVV  185 (347)
T ss_dssp             EEEECCCC---------CCCC---------CEEEEEEEETTTT-----------EEEEEEEE-E-TTCEEEEETTE-EEE
T ss_pred             EEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-----------eEEeeecC-C-CcccccCCCCe-EEE
Confidence            87642                           56888887652           23234443 3 67889999999 888


Q ss_pred             EEeCCC-------cEEEE--eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-C--------CeEEEEecCCcEEE
Q psy1242         468 SGSQLG-------PVLVH--TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-R--------GHIAAFTMNGNRLR  528 (540)
Q Consensus       468 sgs~Dg-------~v~iw--~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-d--------g~I~lw~~~g~~l~  528 (540)
                      +++.++       ...||  + +++.. .+..+ .  .+..+  +|+|+.|+... +        ..|.+|+ .|+...
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~d-~~~~~-~l~~~-~--~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~  256 (347)
T 2gop_A          186 NVPHREIIPQYFKFWDIYIWE-DGKEE-KMFEK-V--SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMG  256 (347)
T ss_dssp             EEECCCSSCCSSCCEEEEEEE-TTEEE-EEEEE-E--SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEE
T ss_pred             EEecccccccccccccEEEeC-CCceE-EeccC-c--ceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEe
Confidence            776653       34454  5 55543 33333 3  34444  99999887632 2        4688888 665443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.81  E-value=6.8e-08  Score=99.25  Aligned_cols=129  Identities=9%  Similarity=-0.044  Sum_probs=98.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..++|  |+.. ++++ .++.|++||+.+.......               ..|...+.++.+.+    .  .+++++.
T Consensus        90 V~~l~f--d~~~-L~v~-~~~~l~v~dv~sl~~~~~~---------------~~~~~~v~~i~~~~----p--~~av~~~  144 (388)
T 1xip_A           90 VIFVCF--HGDQ-VLVS-TRNALYSLDLEELSEFRTV---------------TSFEKPVFQLKNVN----N--TLVILNS  144 (388)
T ss_dssp             EEEEEE--ETTE-EEEE-ESSEEEEEESSSTTCEEEE---------------EECSSCEEEEEECS----S--EEEEEET
T ss_pred             eeEEEE--CCCE-EEEE-cCCcEEEEEchhhhccCcc---------------ceeecceeeEEecC----C--CEEEEEC
Confidence            456677  8886 4666 7899999999876654445               56677788887765    2  3888999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcE---EEEecC-----
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDL---LRSLDP-----  490 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~---~~~l~~-----  490 (540)
                      ||++.+||+....           ...    +...|+|++|||+|  ++.|..||++++|+..+..   .+++..     
T Consensus       145 dG~L~v~dl~~~~-----------~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~  207 (388)
T 1xip_A          145 VNDLSALDLRTKS-----------TKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELE  207 (388)
T ss_dssp             TSEEEEEETTTCC-----------EEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHH
T ss_pred             CCCEEEEEccCCc-----------ccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccc
Confidence            9999999987522           221    44689999999999  6889999999999775554   556622     


Q ss_pred             ----CCCCCCceEEEEeeCCCEEEE
Q psy1242         491 ----PSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       491 ----~~~~~~v~~l~fspdg~~l~s  511 (540)
                          |.  ..|.+|.|.+++.++++
T Consensus       208 ~~~~~~--~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          208 ELPVEE--YSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TSCTTT--SEEEEEEESSSSEEEEE
T ss_pred             cccCCC--eeEEEEEEecCCeEEEE
Confidence                33  37899999999999987

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.81  E-value=2e-06  Score=83.69  Aligned_cols=227  Identities=9%  Similarity=0.017  Sum_probs=139.5

Q ss_pred             CCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----cceee
Q psy1242         262 MPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKLRV  337 (540)
Q Consensus       262 ~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~v  337 (540)
                      .++.+.++...++.|..|++. +...... ... .......+.+.+++.+.++....... ......+.+.    .....
T Consensus        24 ~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i-~~~~~~g~~~~~~~~~~~~   99 (299)
T 2z2n_A           24 DKGKVWITQHKANMISCINLD-GKITEYP-LPT-PDAKVMCLTISSDGEVWFTENAANKI-GRITKKGIIKEYTLPNPDS   99 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-CCEEEEE-CSS-TTCCEEEEEECTTSCEEEEETTTTEE-EEECTTSCEEEEECSSTTC
T ss_pred             CCCCEEEEecCCCcEEEEcCC-CCeEEec-CCc-ccCceeeEEECCCCCEEEeCCCCCeE-EEECCCCcEEEEeCCCcCC
Confidence            334446666667889999987 3322111 000 01122235566777766654211111 1111110000    00011


Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ....+++.++|+ ++++...++.|.+||. +++.....              +..+...+.++++++    +|...++..
T Consensus       100 ~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~--------------~~~~~~~~~~i~~~~----~g~l~v~~~  159 (299)
T 2z2n_A          100 APYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYE--------------LPNKGSYPSFITLGS----DNALWFTEN  159 (299)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEE--------------CSSTTCCEEEEEECT----TSCEEEEET
T ss_pred             CceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEec--------------CCCCCCCCceEEEcC----CCCEEEEeC
Confidence            356778889998 5677767889999998 56544322              023456789999999    888888777


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceE-EeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRA-TLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGFA  495 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~~  495 (540)
                      .++.|..||. ..           +... .+..+...+.+++++++|.++++...++.|.+++.+++.... +..+..  
T Consensus       160 ~~~~i~~~~~-~g-----------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--  225 (299)
T 2z2n_A          160 QNNAIGRITE-SG-----------DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNA--  225 (299)
T ss_dssp             TTTEEEEECT-TC-----------CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC--
T ss_pred             CCCEEEEEcC-CC-----------cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCC--
Confidence            7889999987 31           1211 133445578899999999987777778888888777765432 222223  


Q ss_pred             CceEEEEeeCCCEEEEe-cCCeEEEEecCCcE
Q psy1242         496 SPESVVMSREGVIVVNY-ERGHIAAFTMNGNR  526 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~  526 (540)
                      .+.+++++++|++.++. .++.|..|+++|+.
T Consensus       226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~  257 (299)
T 2z2n_A          226 RPHAITAGAGIDLWFTEWGANKIGRLTSNNII  257 (299)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEEETTTEE
T ss_pred             CceeEEECCCCCEEEeccCCceEEEECCCCce
Confidence            67899999999977765 56899999997753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.80  E-value=3.9e-07  Score=102.00  Aligned_cols=237  Identities=11%  Similarity=-0.039  Sum_probs=139.2

Q ss_pred             eeeecCCcEEEEEccCc-----ceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC-----------
Q psy1242         257 YVTLHMPSVVTVTANHQ-----FAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA-----------  320 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D-----~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~-----------  320 (540)
                      .+.+++++..++.++.+     .+|++||..++.........  +  ....+.|++| ..++.++....           
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~--~--~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW--V--KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE--E--ESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC--c--eeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            34555555545544332     67999999887643221111  0  0124679999 55544332211           


Q ss_pred             --CccccccCCCcCccee--------eEEEEEEEecCCCEEEEEEec----CCcEEEEEccCC--eEEEEEecccceeee
Q psy1242         321 --PVPKRHLGDNFSQKLR--------VRHNCFVTTVDSRFLLACGFW----DNSFRVFSTDNA--RIVQIIFGHYGVVTS  384 (540)
Q Consensus       321 --~~~~~~~~~~~~~~~~--------v~~~~~~~spdg~~llasgs~----Dgsv~iwd~~~g--~~~~~l~~~~~~v~~  384 (540)
                        ......++........        .....+.|||||++|+++...    ...|.+||+.++  +....+         
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l---------  312 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL---------  312 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE---------
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe---------
Confidence              0122223222111111        125677889999986555432    347999999877  313444         


Q ss_pred             eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEc
Q psy1242         385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAIS  460 (540)
Q Consensus       385 ~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s  460 (540)
                            ..+.+.+.... +|    +|+.|+..+.+    +.|.+||+....         ......+..+...+..++++
T Consensus       313 ------~~~~~~~~~~~-~~----dg~~l~~~s~~~~~~~~l~~~d~~~~~---------~~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          313 ------IPDLKAQWDFV-DG----VGDQLWFVSGDGAPLKKIVRVDLSGST---------PRFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             ------ECSSSSCEEEE-EE----ETTEEEEEECTTCTTCEEEEEECSSSS---------CEEEEEECCCSSEEEEEEEE
T ss_pred             ------cCCCCceEEEE-ec----cCCEEEEEECCCCCCCEEEEEeCCCCc---------cccEEEecCCCCeEEEEEEE
Confidence                  34444454443 47    78888777754    458889876521         01233344555567778887


Q ss_pred             CCCCEEEEEeCCCcEEEE--eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-e-c---CCeEEEEecCCcEEEe
Q psy1242         461 AELGLVVSGSQLGPVLVH--TTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-Y-E---RGHIAAFTMNGNRLRH  529 (540)
Q Consensus       461 pdg~~lasgs~Dg~v~iw--~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~-~---dg~I~lw~~~g~~l~~  529 (540)
                       ++.++++...|+..+||  +.+|+.++.+..+... .+..++++|++..|+. . +   .++|++||+.+..+..
T Consensus       373 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~  446 (741)
T 1yr2_A          373 -GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIG-SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTP  446 (741)
T ss_dssp             -BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSC-EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEE
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCe-EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEE
Confidence             56788889999998887  4467777777754221 5788999999986653 2 2   3789999987544433

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.79  E-value=7.4e-08  Score=107.05  Aligned_cols=157  Identities=12%  Similarity=0.010  Sum_probs=104.3

Q ss_pred             eEEEEEEEecCCCEEEEE----EecCCcEEEEEccCCeEE-EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         337 VRHNCFVTTVDSRFLLAC----GFWDNSFRVFSTDNARIV-QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       337 v~~~~~~~spdg~~llas----gs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      ..+..++|||||++|+.+    |+.+.+|++||+.+|+.+ ...              +.+.  ....++|+|    ||+
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~--------------~~~~--~~~~~~wsp----Dg~  180 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV--------------IEGG--KYATPKWTP----DSK  180 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC--------------BSCC--TTCCCEECT----TSS
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc--------------cCcc--cccceEEec----CCC
Confidence            346788899999975444    334467999999998764 111              0111  126789999    999


Q ss_pred             EEEEEeCCCc-------------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC----c
Q psy1242         412 FIASGSADCT-------------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG----P  474 (540)
Q Consensus       412 ~l~sgs~Dgt-------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg----~  474 (540)
                      .|+.++.|..             |++|++.+....       ...+....+|...+.+++|||||++|+.++.++    .
T Consensus       181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~  253 (695)
T 2bkl_A          181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND  253 (695)
T ss_dssp             EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred             EEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence            9999998877             999998764311       123333345667889999999999988877665    4


Q ss_pred             EEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec----CCeEEEEecCC
Q psy1242         475 VLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE----RGHIAAFTMNG  524 (540)
Q Consensus       475 v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g  524 (540)
                      |.+++. +++ .+.+..+..  .+....+ ++|.+++.+.    ++.|.+|++++
T Consensus       254 l~~~~~~~~~-~~~l~~~~~--~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~  304 (695)
T 2bkl_A          254 VYWKRPGEKD-FRLLVKGVG--AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK  304 (695)
T ss_dssp             EEEECTTCSS-CEEEEECSS--CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB
T ss_pred             EEEEcCCCCc-eEEeecCCC--ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC
Confidence            555554 344 344444444  3455666 6777444443    47899999873

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.76  E-value=2.8e-07  Score=94.00  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=70.2

Q ss_pred             EEeccCccCCCcEEEEEeC-----------CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242         400 LSRSECNITADCFIASGSA-----------DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       400 l~~sp~~~~dg~~l~sgs~-----------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~las  468 (540)
                      ++++|    +++.++.+..           ..+|.+||+.+           .+.+..+..+.  +.+++|+|||++|++
T Consensus       259 ~a~~~----dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-----------~~~v~~i~~~~--p~~ia~spdg~~l~v  321 (361)
T 2oiz_A          259 VGLHR----ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-----------KQRVARIPGRD--ALSMTIDQQRNLMLT  321 (361)
T ss_dssp             EEEET----TTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-----------TEEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred             EEEec----CCCeEEEEEccCCCcccccCCCceEEEEECCC-----------CcEEEEEecCC--eeEEEECCCCCEEEE
Confidence            67888    7777665532           34899999876           45778887776  899999999999988


Q ss_pred             EeCCCcEEEEeC-CC--cEEEEecCCCCCCCceEEEEeeCCC
Q psy1242         469 GSQLGPVLVHTT-FG--DLLRSLDPPSGFASPESVVMSREGV  507 (540)
Q Consensus       469 gs~Dg~v~iw~~-~g--~~~~~l~~~~~~~~v~~l~fspdg~  507 (540)
                      ++. ++|.+|+. ++  +.+.++.....  .+..++++|+|+
T Consensus       322 ~n~-~~v~v~D~~t~~l~~~~~i~~~G~--~P~~~~~~p~G~  360 (361)
T 2oiz_A          322 LDG-GNVNVYDISQPEPKLLRTIEGAAE--ASLQVQFHPVGG  360 (361)
T ss_dssp             ECS-SCEEEEECSSSSCEEEEEETTSCS--SEEEEEECCCSC
T ss_pred             eCC-CeEEEEECCCCcceeeEEeccCCC--CcEEEEecCCCC
Confidence            886 99999975 88  88888855554  578999999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.75  E-value=2.2e-06  Score=83.32  Aligned_cols=228  Identities=11%  Similarity=0.025  Sum_probs=137.1

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----cce
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKL  335 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~  335 (540)
                      +..++.+.++...++.|..|++.. ..... ... ........+.+.+++.+.++....... ......+...    ...
T Consensus        64 ~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~-~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i-~~~d~~g~~~~~~~~~~  139 (299)
T 2z2n_A           64 ISSDGEVWFTENAANKIGRITKKG-IIKEY-TLP-NPDSAPYGITEGPNGDIWFTEMNGNRI-GRITDDGKIREYELPNK  139 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTS-CEEEE-ECS-STTCCEEEEEECTTSCEEEEETTTTEE-EEECTTCCEEEEECSST
T ss_pred             ECCCCCEEEeCCCCCeEEEECCCC-cEEEE-eCC-CcCCCceeeEECCCCCEEEEecCCceE-EEECCCCCEEEecCCCC
Confidence            334455566666678899998752 21111 000 001122235566777766654221111 1111010000    000


Q ss_pred             eeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      ......+++.++|+ ++++...++.|.++|. +++.....              +..+...+.++++++    +|...++
T Consensus       140 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~--------------~~~~~~~~~~i~~~~----~g~l~v~  199 (299)
T 2z2n_A          140 GSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFK--------------IPTPASGPVGITKGN----DDALWFV  199 (299)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEE--------------CSSTTCCEEEEEECT----TSSEEEE
T ss_pred             CCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEee--------------CCCCCCcceeEEECC----CCCEEEE
Confidence            11356778899997 5666666789999998 66654321              033455688999999    8887777


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGF  494 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~  494 (540)
                      ...++.|.+|+. ....          ....+..+...+.+++++++|.++++...++.|..++.+++.... +..+.. 
T Consensus       200 ~~~~~~i~~~~~-~g~~----------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~-  267 (299)
T 2z2n_A          200 EIIGNKIGRITT-SGEI----------TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSA-  267 (299)
T ss_dssp             ETTTTEEEEECT-TCCE----------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSC-
T ss_pred             ccCCceEEEECC-CCcE----------EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCC-
Confidence            767889999987 3210          111233455678999999999977777677888888777754322 222233 


Q ss_pred             CCceEEEEeeCCCEEEEecCCeEEEEecCCc
Q psy1242         495 ASPESVVMSREGVIVVNYERGHIAAFTMNGN  525 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~  525 (540)
                       .+.++++ ++|.+.++...+.|..++++.+
T Consensus       268 -~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          268 -EPHGICF-DGETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             -CEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred             -ccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence             6789999 9999888766788888887643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.69  E-value=6.5e-06  Score=89.08  Aligned_cols=237  Identities=11%  Similarity=0.047  Sum_probs=144.6

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccC-CCcCccee----eE
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLG-DNFSQKLR----VR  338 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~-~~~~~~~~----v~  338 (540)
                      ..++++.+.+++|.++|..+.+....+..    +.....+.+++|+..+.+++.+. ......+. ........    ..
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~----g~~p~~v~~SpDGr~lyv~~~dg-~V~viD~~~~t~~~v~~i~~G~~  241 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT----GYAVHISRLSASGRYLFVIGRDG-KVNMIDLWMKEPTTVAEIKIGSE  241 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSCEEEEEETTS-EEEEEETTSSSCCEEEEEECCSE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeC----CCCccceEECCCCCEEEEEcCCC-eEEEEECCCCCCcEeEEEecCCC
Confidence            45678888999999999987654432221    11222467899997665554322 12222221 01110111    12


Q ss_pred             EEEEEEe----cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-ceEEEEeccCccCCCcEE
Q psy1242         339 HNCFVTT----VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-VVTCLSRSECNITADCFI  413 (540)
Q Consensus       339 ~~~~~~s----pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-~Vt~l~~sp~~~~dg~~l  413 (540)
                      ...++++    |||++++++..++++|.|+|..+.+.++.+......+..     ...|.. .+..+..++.   ...++
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~-----~~~~p~~rva~i~~s~~---~~~~v  313 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE-----QEYHPEPRVAAILASHY---RPEFI  313 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT-----CCEESCCCEEEEEECSS---SSEEE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc-----ccccCCCceEEEEEcCC---CCEEE
Confidence            4678899    699998888889999999999999998877321100000     001222 6788888882   24556


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC-CCcEEEEecC-
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT-FGDLLRSLDP-  490 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~-~g~~~~~l~~-  490 (540)
                      ++...+|.|.++|......         ..+..+ .......++.|+|+++++++++ .++.|.+++. +++++..+.. 
T Consensus       314 v~~~~~g~v~~vd~~~~~~---------~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg  383 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNN---------LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  383 (567)
T ss_dssp             EEETTTTEEEEEETTCSSE---------EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             EEecCCCeEEEEecCCCcc---------ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence            6666789999999765221         112222 2344577889999999887665 5678877755 8888777765 


Q ss_pred             CCCCCCceEEE-EeeCCC-EEEEe--cCCeEEEEecC
Q psy1242         491 PSGFASPESVV-MSREGV-IVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       491 ~~~~~~v~~l~-fspdg~-~l~s~--~dg~I~lw~~~  523 (540)
                      .....+-..+. ++|++. +.+++  .++.|.+++.+
T Consensus       384 g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          384 GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence            22211112344 478744 44454  46899999976

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.68  E-value=1.9e-06  Score=89.53  Aligned_cols=232  Identities=9%  Similarity=-0.005  Sum_probs=136.3

Q ss_pred             eeeecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC-CccccccCCCcC---
Q psy1242         257 YVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA-PVPKRHLGDNFS---  332 (540)
Q Consensus       257 ~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~-~~~~~~~~~~~~---  332 (540)
                      .+.+..+..+.++...+..|++|++.++........    ..... +.+++++..+..++.... ..........+.   
T Consensus       135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             EEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            344556677788888889999999876543322111    11222 677888764443322211 110000000000   


Q ss_pred             -----cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcce--EEEEeccC
Q psy1242         333 -----QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVV--TCLSRSEC  405 (540)
Q Consensus       333 -----~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~V--t~l~~sp~  405 (540)
                           ........+++++|++..|++ +..++.|+.||..++... .+.+..          ..++...-  ..++|+|.
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~-~~~~~~----------~~g~~~~~P~~~ia~~p~  277 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVT-LIKQLE----------LSGSLGTNPGPYLIYYFV  277 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEE-EEEECC----------CCSCCCCSSCCEEEEETT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEE-EEeccc----------ccCCCCCCccccEEEeCC
Confidence                 001112456788995555555 566889999999876532 220000          02222222  38999992


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC---------------CCCEEEEEEcCCCCEEEEEe
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH---------------EQPVTSVAISAELGLVVSGS  470 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h---------------~~~V~~v~~spdg~~lasgs  470 (540)
                         ++.++++...+++|+.|+.+..             +..+.++               -.....++++++|.++++-+
T Consensus       278 ---~g~lyv~d~~~~~I~~~~~~g~-------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          278 ---DSNFYMSDQNLSSVYKITPDGE-------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             ---TTEEEEEETTTTEEEEECTTCC-------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             ---CCEEEEEeCCCCEEEEEecCCC-------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence               3566666677889999986542             1222222               24578999999999888887


Q ss_pred             -CCCcEEEEe-CCCcEEEEecCCC-------------CCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242         471 -QLGPVLVHT-TFGDLLRSLDPPS-------------GFASPESVVMSREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       471 -~Dg~v~iw~-~~g~~~~~l~~~~-------------~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~  522 (540)
                       .++.|+.++ .+|.. .++.++.             ....+..++++++|.++++ ...++|+.+++
T Consensus       342 ~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             888999998 57764 4443321             0114789999999887776 45678887765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.68  E-value=3.6e-07  Score=88.06  Aligned_cols=157  Identities=9%  Similarity=0.072  Sum_probs=108.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..+++++++|+ ++++.. ++.|.+||...+... .+.              ......+.++++++    +|+.+++...
T Consensus        69 p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~-~~~--------------~~~~~~p~~i~~~~----~g~l~v~~~~  127 (270)
T 1rwi_B           69 PQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQT-VLP--------------FDGLNYPEGLAVDT----QGAVYVADRG  127 (270)
T ss_dssp             CCCEEECTTCC-EEEEET-TTEEEEECTTCSCCE-ECC--------------CCSCSSEEEEEECT----TCCEEEEEGG
T ss_pred             cceeEECCCCC-EEEEcC-CCEEEEEeCCCceEe-eee--------------cCCcCCCcceEECC----CCCEEEEECC
Confidence            34577789998 566665 889999998755432 220              12335688999999    8988887777


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecC-CCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDP-PSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~-~~~~~~v  497 (540)
                      ++.|.+|+.....           ...........+.+++++++|+++++...++.|.+++..+........ +..  .+
T Consensus       128 ~~~i~~~~~~~~~-----------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~p  194 (270)
T 1rwi_B          128 NNRVVKLAAGSKT-----------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT--AP  194 (270)
T ss_dssp             GTEEEEECTTCCS-----------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC--SE
T ss_pred             CCEEEEEECCCce-----------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCC--Cc
Confidence            8899999743311           111112233457789999999988887778899988876554433322 222  57


Q ss_pred             eEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEe
Q psy1242         498 ESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRH  529 (540)
Q Consensus       498 ~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~  529 (540)
                      .+++++++|.+.++. .++.|.+|++++.....
T Consensus       195 ~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~  227 (270)
T 1rwi_B          195 WGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV  227 (270)
T ss_dssp             EEEEECTTCCEEEEETTTSCEEEECTTCSCCEE
T ss_pred             eEEEECCCCCEEEEECCCCcEEEEcCCCCccee
Confidence            899999999777764 46889999998765443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.67  E-value=2.8e-06  Score=83.74  Aligned_cols=214  Identities=14%  Similarity=0.099  Sum_probs=130.1

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCcccccc--------CCCcCcc
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHL--------GDNFSQK  334 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~--------~~~~~~~  334 (540)
                      ...++++......|..|++.+..... ..+    ......+.+.+|+.+.++..   ........        .......
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~----~~~~~~i~~~~dG~l~v~~~---~~l~~~d~~~g~~~~~~~~~~~~   95 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQVQR-VTM----DAPVSSVALRQSGGYVATIG---TKFCALNWKEQSAVVLATVDNDK   95 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEE-EEC----SSCEEEEEEBTTSSEEEEET---TEEEEEETTTTEEEEEEECCTTC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEE-EeC----CCceEEEEECCCCCEEEEEC---CeEEEEECCCCcEEEEEecCCCC
Confidence            45567777778899999987654321 111    12223466778887665431   11111111        1011111


Q ss_pred             eeeEEEEEEEecCCCEEEEEEecC---------CcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         335 LRVRHNCFVTTVDSRFLLACGFWD---------NSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       335 ~~v~~~~~~~spdg~~llasgs~D---------gsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      .......++++|+|+. +++...+         ..-.||.+.. ++... +               ..+....+.++|+|
T Consensus        96 ~~~~~~di~~d~dG~l-~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~---------------~~~~~~pngi~~sp  158 (297)
T 3g4e_A           96 KNNRFNDGKVDPAGRY-FAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y---------------FDQVDISNGLDWSL  158 (297)
T ss_dssp             SSEEEEEEEECTTSCE-EEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E---------------EEEESBEEEEEECT
T ss_pred             CCCCCCCEEECCCCCE-EEecCCcccccccccCCCcEEEEEECCCCEEE-E---------------eeccccccceEEcC
Confidence            1234678888999994 4543221         3345555543 33322 2               23344568899999


Q ss_pred             CccCCCcEE-EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CC
Q psy1242         405 CNITADCFI-ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FG  482 (540)
Q Consensus       405 ~~~~dg~~l-~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g  482 (540)
                          +++.| ++.+.++.|.+|+++...+...    ..+....+..+......+++.++|.+.++...++.|..|+. +|
T Consensus       159 ----dg~~lyv~~~~~~~i~~~~~d~~~G~~~----~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          159 ----DHKIFYYIDSLSYSVDAFDYDLQTGQIS----NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             ----TSCEEEEEEGGGTEEEEEEECTTTCCEE----EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             ----CCCEEEEecCCCCcEEEEeccCCCCccc----CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence                88866 5556688999999753221100    01122333344456789999999998888888888988887 59


Q ss_pred             cEEEEecCCCCCCCceEEEEe-eCCCEEEE
Q psy1242         483 DLLRSLDPPSGFASPESVVMS-REGVIVVN  511 (540)
Q Consensus       483 ~~~~~l~~~~~~~~v~~l~fs-pdg~~l~s  511 (540)
                      +++..+..+..  .+.+++|. |+++.|+.
T Consensus       231 ~~~~~i~~p~~--~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          231 KRLQTVKLPVD--KTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             CEEEEEECSSS--BEEEEEEESGGGCEEEE
T ss_pred             eEEEEEECCCC--CceEEEEeCCCCCEEEE
Confidence            99999987765  68999998 88886654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.65  E-value=1.1e-06  Score=98.51  Aligned_cols=156  Identities=13%  Similarity=0.055  Sum_probs=101.9

Q ss_pred             EEEEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ....++|||||++|+.+.+.+|    +|++||+.+|+.+...                .+...+..++|+|    | +.|
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~----------------~~~~~~~~~~wsp----D-~~l  222 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE----------------LKWVKFSGLAWLG----N-DAL  222 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE----------------EEEEESCCCEEST----T-SEE
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc----------------CCCceeccEEEEC----C-CEE
Confidence            4667889999998655544434    5999999999875432                1222245789999    9 889


Q ss_pred             EEEeCCCc--------------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC-----c
Q psy1242         414 ASGSADCT--------------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG-----P  474 (540)
Q Consensus       414 ~sgs~Dgt--------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg-----~  474 (540)
                      +.++.|+.              |.+|++.+....       ...+.....+...+.++.|||||++|+..+.++     .
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNT  295 (741)
T ss_dssp             EEEECCCC--------CCCCCEEEEEETTSCGGG-------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred             EEEEecCcccccccccCCCCCEEEEEECCCCchh-------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence            88887665              888887653211       112222233444688999999999888777554     6


Q ss_pred             EEEEeC-CC--cEEEEecCCCCCCCceEEEEeeCCCEEEEe-c----CCeEEEEecCC
Q psy1242         475 VLVHTT-FG--DLLRSLDPPSGFASPESVVMSREGVIVVNY-E----RGHIAAFTMNG  524 (540)
Q Consensus       475 v~iw~~-~g--~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~----dg~I~lw~~~g  524 (540)
                      |++|+. ++  +....+..+..  .+... ++|+|+.|+.. .    .+.|.+|++++
T Consensus       296 l~~~d~~~~~~~~~~~l~~~~~--~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          296 VHVARVTNGKIGPVTALIPDLK--AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEEEEEETTEECCCEEEECSSS--SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEEEECCCCCCcccEEecCCCC--ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            777765 44  31455555544  23444 45888877763 2    35699999875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.63  E-value=2.9e-06  Score=94.21  Aligned_cols=233  Identities=12%  Similarity=0.064  Sum_probs=134.4

Q ss_pred             eecCCcEEEE-----EccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCC------------C
Q psy1242         259 TLHMPSVVTV-----TANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA------------P  321 (540)
Q Consensus       259 ~~~~~~~~lv-----s~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~------------~  321 (540)
                      .+++++..++     +++.+.+|++||+.+++..... .. .+  ....+.|+ |+..++.++....            .
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~-~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK-DV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE-EE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC-Cc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            4444444444     3445589999999887633211 10 01  01346789 8865443322211            1


Q ss_pred             ccccccCCCcCcc---------eeeEEEEEEEecCCCEEEEEEec---CCcEEEEEccCCe-EEEEEecccceeeeeeEE
Q psy1242         322 VPKRHLGDNFSQK---------LRVRHNCFVTTVDSRFLLACGFW---DNSFRVFSTDNAR-IVQIIFGHYGVVTSRIVQ  388 (540)
Q Consensus       322 ~~~~~~~~~~~~~---------~~v~~~~~~~spdg~~llasgs~---Dgsv~iwd~~~g~-~~~~l~~~~~~v~~~~~~  388 (540)
                      ...+.++......         .......+.+||||++|+++.+.   ++.|.++|+.++. ....+             
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l-------------  276 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV-------------  276 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE-------------
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE-------------
Confidence            2222333222111         11224567889999987666553   3579999998763 33444             


Q ss_pred             EeeccCcceEEEEeccCccCCCcEE-EEEeCC---CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC
Q psy1242         389 IIFGHYGVVTCLSRSECNITADCFI-ASGSAD---CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG  464 (540)
Q Consensus       389 ~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~D---gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~  464 (540)
                        ..+.+..... +++    +|..| +++..+   +.|.++++.....         .....+..|...+.  .|+++++
T Consensus       277 --~~~~~~~~~~-~~~----~g~~l~~~t~~~~~~~~l~~~d~~~~~~---------~~~~~l~~~~~~~~--~~s~~g~  338 (693)
T 3iuj_A          277 --QGDLDADVSL-VDN----KGSTLYLLTNRDAPNRRLVTVDAANPGP---------AHWRDLIPERQQVL--TVHSGSG  338 (693)
T ss_dssp             --ECSSSSCEEE-EEE----ETTEEEEEECTTCTTCEEEEEETTSCCG---------GGCEEEECCCSSCE--EEEEETT
T ss_pred             --eCCCCceEEE-Eec----cCCEEEEEECCCCCCCEEEEEeCCCCCc---------cccEEEecCCCCEE--EEEEECC
Confidence              4555555554 555    55544 444444   5788888765321         12345666666665  8899998


Q ss_pred             EEEEEeC-CC--cEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecC----CeEEEEecCCcEEE
Q psy1242         465 LVVSGSQ-LG--PVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YER----GHIAAFTMNGNRLR  528 (540)
Q Consensus       465 ~lasgs~-Dg--~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~d----g~I~lw~~~g~~l~  528 (540)
                      .|+.... ++  .|.+|+.+|...+.+..+... .+..+.+++++..|+. .++    +.|..|++.+..+.
T Consensus       339 ~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~-~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          339 YLFAEYMVDATARVEQFDYEGKRVREVALPGLG-SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEEEEETTEEEEEEECTTSCEEEEECCSSSS-EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEEEEEECCeeEEEEEECCCCeeEEeecCCCc-eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            7776654 44  466677777777777654321 4566777888886664 333    78999998744333

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.60  E-value=1.6e-05  Score=77.27  Aligned_cols=227  Identities=9%  Similarity=0.032  Sum_probs=137.5

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----cceeeE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKLRVR  338 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~v~  338 (540)
                      ++.+.++...++.|.+|+.. +..... .... .......+.+.+++.+.++....... ......+...    ......
T Consensus        30 ~g~l~v~~~~~~~v~~~~~~-~~~~~~-~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~v-~~~d~~g~~~~~~~~~~~~~  105 (300)
T 2qc5_A           30 DGKVWFTQHKANKISSLDQS-GRIKEF-EVPT-PDAKVMCLIVSSLGDIWFTENGANKI-GKLSKKGGFTEYPLPQPDSG  105 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEE-ECSS-TTCCEEEEEECTTSCEEEEETTTTEE-EEECTTSCEEEEECSSTTCC
T ss_pred             CCCEEEEcCCCCeEEEECCC-CceEEE-ECCC-CCCcceeEEECCCCCEEEEecCCCeE-EEECCCCCeEEecCCCCCCC
Confidence            34446666667888889876 332211 0000 01112234556667666543211111 1100000000    000123


Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..++++.++|+ ++++...++.|..+|.. ++.....              +......+.++++++    +|+..++...
T Consensus       106 ~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~--------------~~~~~~~~~~i~~d~----~g~l~v~~~~  165 (300)
T 2qc5_A          106 PYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYD--------------LPNKGSYPAFITLGS----DNALWFTENQ  165 (300)
T ss_dssp             EEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEE--------------CSSTTCCEEEEEECT----TSSEEEEETT
T ss_pred             CccceECCCCC-EEEEccCCCeEEEECCC-CCEEEcc--------------CCCCCCCceeEEECC----CCCEEEEecC
Confidence            56778889998 56666667889999987 6654221              023446788999999    8887777666


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGFAS  496 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~~~  496 (540)
                      ++.|..++...            +.. ..+..+...+.+++++++|.+.++....+.|.+++.+++.... +..+..  .
T Consensus       166 ~~~i~~~~~~g------------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~  231 (300)
T 2qc5_A          166 NNSIGRITNTG------------KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA--R  231 (300)
T ss_dssp             TTEEEEECTTC------------CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC--C
T ss_pred             CCeEEEECCCC------------cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC--C
Confidence            78899998632            111 1223445678999999999887777777788888777766543 222223  5


Q ss_pred             ceEEEEeeCCCEEEEe-cCCeEEEEecCCcEE
Q psy1242         497 PESVVMSREGVIVVNY-ERGHIAAFTMNGNRL  527 (540)
Q Consensus       497 v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l  527 (540)
                      +.++++.++|++.++. .++.|..|+++|+..
T Consensus       232 ~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~  263 (300)
T 2qc5_A          232 PHAITAGKNSEIWFTEWGANQIGRITNDNTIQ  263 (300)
T ss_dssp             EEEEEECSTTCEEEEETTTTEEEEECTTSCEE
T ss_pred             ceEEEECCCCCEEEeccCCCeEEEECCCCcEE
Confidence            7899999999976664 368999999987654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.58  E-value=3.7e-06  Score=82.87  Aligned_cols=171  Identities=13%  Similarity=0.077  Sum_probs=111.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++++++|+ ++++.  ++.|.+||.++++.........           ......++.++++|    +|++.++...
T Consensus        56 ~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~~~~~~~~~-----------~~~~~~~~di~~d~----dG~l~~~~~~  117 (297)
T 3g4e_A           56 VSSVALRQSGG-YVATI--GTKFCALNWKEQSAVVLATVDN-----------DKKNNRFNDGKVDP----AGRYFAGTMA  117 (297)
T ss_dssp             EEEEEEBTTSS-EEEEE--TTEEEEEETTTTEEEEEEECCT-----------TCSSEEEEEEEECT----TSCEEEEEEE
T ss_pred             eEEEEECCCCC-EEEEE--CCeEEEEECCCCcEEEEEecCC-----------CCCCCCCCCEEECC----CCCEEEecCC
Confidence            67888999999 44543  6789999998877543331000           01234578899999    8987765432


Q ss_pred             ---------CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEe---CCCcEE
Q psy1242         419 ---------DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHT---TFGDLL  485 (540)
Q Consensus       419 ---------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~---~~g~~~  485 (540)
                               .....||.+...          ++ ...+..+......++|+|+++.+ ++.+.++.|.+++   .+|.+.
T Consensus       118 ~~~~~~~~~~~~~~l~~~d~~----------g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~  186 (297)
T 3g4e_A          118 EETAPAVLERHQGALYSLFPD----------HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS  186 (297)
T ss_dssp             CCSBTTBCCTTCEEEEEECTT----------SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE
T ss_pred             cccccccccCCCcEEEEEECC----------CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc
Confidence                     234567766531          11 22233334456889999999865 5556678888774   355432


Q ss_pred             -----EEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeec-CCcceecC
Q psy1242         486 -----RSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESH-NDNLQKTA  540 (540)
Q Consensus       486 -----~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~-~~~V~~va  540 (540)
                           ..+....+  .+..+++.++|++.++ ...+.|..|+++ |+.+..+.. ...+++++
T Consensus       187 ~~~~~~~~~~~~~--~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~  247 (297)
T 3g4e_A          187 NRRSVYKLEKEEQ--IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCC  247 (297)
T ss_dssp             EEEEEEECCGGGC--EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEE
T ss_pred             CcEEEEECCCCCC--CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEE
Confidence                 22222223  5689999999987776 456889999997 999888873 35666653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.57  E-value=2.3e-06  Score=85.77  Aligned_cols=156  Identities=10%  Similarity=-0.032  Sum_probs=108.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      ...++++++++ ++++...++.|.+||..+++....+.....          .++......+++ .    ++..+++.. 
T Consensus        86 p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~----------~~~~~~p~~i~~-~----~~~lyv~~~~  149 (328)
T 3dsm_A           86 PRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDM----------DMESGSTEQMVQ-Y----GKYVYVNCWS  149 (328)
T ss_dssp             EEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTC----------CTTTCBCCCEEE-E----TTEEEEEECT
T ss_pred             CcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCc----------cccCCCcceEEE-E----CCEEEEEcCC
Confidence            56777889985 667766899999999999988877621110          011124556777 4    566566554 


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEeC-CCcEEE
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL----------GPVLVHTT-FGDLLR  486 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D----------g~v~iw~~-~g~~~~  486 (540)
                      .+++|.++|..+.           +.+..+... ....+++++++|++++++..+          +.|.+++. +++...
T Consensus       150 ~~~~v~viD~~t~-----------~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~  217 (328)
T 3dsm_A          150 YQNRILKIDTETD-----------KVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK  217 (328)
T ss_dssp             TCCEEEEEETTTT-----------EEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCC-----------eEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence            4899999998763           334444332 234678899999987777654          67877765 678777


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCC
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNG  524 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g  524 (540)
                      .+..+.+. .+..++|+|+++.|..+.. .|.+||+..
T Consensus       218 ~~~~~~g~-~p~~la~~~d~~~lyv~~~-~v~~~d~~t  253 (328)
T 3dsm_A          218 QFKFKLGD-WPSEVQLNGTRDTLYWINN-DIWRMPVEA  253 (328)
T ss_dssp             EEECCTTC-CCEEEEECTTSCEEEEESS-SEEEEETTC
T ss_pred             EEecCCCC-CceeEEEecCCCEEEEEcc-EEEEEECCC
Confidence            77654332 5789999999998887654 899999873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.55  E-value=3.9e-06  Score=90.76  Aligned_cols=151  Identities=10%  Similarity=-0.008  Sum_probs=107.3

Q ss_pred             EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCC
Q psy1242         350 FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNA  429 (540)
Q Consensus       350 ~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~  429 (540)
                      .++++...+++|.++|..+++.+..+               .. ...+.+++++|    ||+++++++.|+.|.+||+..
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i---------------~~-g~~p~~v~~Sp----DGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVL---------------DT-GYAVHISRLSA----SGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEE---------------EC-SSCEEEEEECT----TSCEEEEEETTSEEEEEETTS
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEE---------------eC-CCCccceEECC----CCCEEEEEcCCCeEEEEECCC
Confidence            36788888999999999999998887               32 23566899999    999999999999999999852


Q ss_pred             CcccccCCCCCCcceEEeccCCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEeC-CCcEEEEecCCC----------C
Q psy1242         430 RTQSIVGETDTPTPRATLTGHEQPVTSVAIS----AELGLVVSGSQ-LGPVLVHTT-FGDLLRSLDPPS----------G  493 (540)
Q Consensus       430 ~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s----pdg~~lasgs~-Dg~v~iw~~-~g~~~~~l~~~~----------~  493 (540)
                      .+         .+.+..+.... ....++|+    |||+++++++. ++++.|++. +.+.+.++....          .
T Consensus       228 ~t---------~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~  297 (567)
T 1qks_A          228 KE---------PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  297 (567)
T ss_dssp             SS---------CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             CC---------CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence            11         34555565433 35789999    69998877664 578877654 667666554211          0


Q ss_pred             -------------------------------------------CCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcEE
Q psy1242         494 -------------------------------------------FASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNRL  527 (540)
Q Consensus       494 -------------------------------------------~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~l  527 (540)
                                                                 ...+..+.|+|+|++++++  .++.|.++|.. ++++
T Consensus       298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence                                                       0012356788999987653  46889999987 5555


Q ss_pred             Eee
Q psy1242         528 RHE  530 (540)
Q Consensus       528 ~~~  530 (540)
                      ...
T Consensus       378 ~~i  380 (567)
T 1qks_A          378 AIE  380 (567)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.53  E-value=1.4e-05  Score=79.97  Aligned_cols=213  Identities=9%  Similarity=-0.023  Sum_probs=126.5

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccc--------cCCCcCcce
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRH--------LGDNFSQKL  335 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~--------~~~~~~~~~  335 (540)
                      ..++++...++.|..|++.++..... .+.    .....+.+++|+.+.+++..   ......        +........
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~----~~v~~i~~~~dg~l~v~~~~---gl~~~d~~~g~~~~~~~~~~~~~  132 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKTVH-ALP----FMGSALAKISDSKQLIASDD---GLFLRDTATGVLTLHAELESDLP  132 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEE-ECS----SCEEEEEEEETTEEEEEETT---EEEEEETTTCCEEEEECSSTTCT
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEE-ECC----CcceEEEEeCCCeEEEEECC---CEEEEECCCCcEEEEeeCCCCCC
Confidence            56667777788999999876542211 111    12234567788876665421   111111        111000011


Q ss_pred             eeEEEEEEEecCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         336 RVRHNCFVTTVDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      .....+++++|+|+. +++...+    +...||.+++++... +               ..+......++|+|    +|+
T Consensus       133 ~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~~g~~~~-~---------------~~~~~~~~~i~~s~----dg~  191 (326)
T 2ghs_A          133 GNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVAKGKVTK-L---------------FADISIPNSICFSP----DGT  191 (326)
T ss_dssp             TEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEETTEEEE-E---------------EEEESSEEEEEECT----TSC
T ss_pred             CCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEeCCcEEE-e---------------eCCCcccCCeEEcC----CCC
Confidence            134678888999994 4444321    223444333454332 2               22334567899999    898


Q ss_pred             EEEE-EeCCCcEEEEEcCCCcc-cccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEec
Q psy1242         412 FIAS-GSADCTVLLWHWNARTQ-SIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLD  489 (540)
Q Consensus       412 ~l~s-gs~DgtV~lWd~~~~~~-~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~  489 (540)
                      .|+. .+.++.|.+|+++...+ ..    ...+....+.+......++++.++|.+.++...++.|.+|+.+++.+..+.
T Consensus       192 ~lyv~~~~~~~I~~~d~~~~~Gl~~----~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~  267 (326)
T 2ghs_A          192 TGYFVDTKVNRLMRVPLDARTGLPT----GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYE  267 (326)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBS----SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEE
T ss_pred             EEEEEECCCCEEEEEEcccccCCcc----cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEE
Confidence            6644 45678999999751111 10    001122333334456788999999998887777788988888888888887


Q ss_pred             CCCCCCCceEEEEe-eCCCEEEE
Q psy1242         490 PPSGFASPESVVMS-REGVIVVN  511 (540)
Q Consensus       490 ~~~~~~~v~~l~fs-pdg~~l~s  511 (540)
                      .+..  .+.+++|+ ++++.|+.
T Consensus       268 ~~~~--~~~~~af~g~d~~~L~v  288 (326)
T 2ghs_A          268 VPGK--QTTCPAFIGPDASRLLV  288 (326)
T ss_dssp             CSCS--BEEEEEEESTTSCEEEE
T ss_pred             CCCC--CcEEEEEecCCCCEEEE
Confidence            7665  58999998 88876654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.46  E-value=3.6e-05  Score=74.65  Aligned_cols=224  Identities=8%  Similarity=0.036  Sum_probs=134.2

Q ss_pred             cCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----ccee
Q psy1242         261 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKLR  336 (540)
Q Consensus       261 ~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~  336 (540)
                      ..++.+.++...++.|..++.. +..... .... .......+.+.+++.+.++....... ......+...    ....
T Consensus        70 ~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i-~~~~~~g~~~~~~~~~~~  145 (300)
T 2qc5_A           70 SSLGDIWFTENGANKIGKLSKK-GGFTEY-PLPQ-PDSGPYGITEGLNGDIWFTQLNGDRI-GKLTADGTIYEYDLPNKG  145 (300)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-SCEEEE-ECSS-TTCCEEEEEECSTTCEEEEETTTTEE-EEECTTSCEEEEECSSTT
T ss_pred             CCCCCEEEEecCCCeEEEECCC-CCeEEe-cCCC-CCCCCccceECCCCCEEEEccCCCeE-EEECCCCCEEEccCCCCC
Confidence            3444556666667788889876 332111 1100 01112235556677666654211111 1110000000    0001


Q ss_pred             eEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ....++++.++|+ +.++...++.|.+++. +++... +.             ...+...+.++++++    +|...++.
T Consensus       146 ~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~-------------~~~~~~~~~~i~~d~----~g~l~v~~  205 (300)
T 2qc5_A          146 SYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YP-------------LPTNAAAPVGITSGN----DGALWFVE  205 (300)
T ss_dssp             CCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EE-------------CSSTTCCEEEEEECT----TSSEEEEE
T ss_pred             CCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-ee-------------CCCCCCCcceEEECC----CCCEEEEc
Confidence            1356788899998 5677666788999998 565443 21             123456788999999    88877777


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEE-ecCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRS-LDPPSGF  494 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~-l~~~~~~  494 (540)
                      ...+.|.+++...            +.. ..+..+...+.+++++++|.+.++...++.|..++.+++.... +..... 
T Consensus       206 ~~~~~i~~~~~~g------------~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-  272 (300)
T 2qc5_A          206 IMGNKIGRITTTG------------EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENA-  272 (300)
T ss_dssp             TTTTEEEEECTTC------------CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTC-
T ss_pred             cCCCEEEEEcCCC------------cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCC-
Confidence            6778899998632            111 1233455678999999999977777677888888777765432 222223 


Q ss_pred             CCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         495 ASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                       .+.++++.++|++.++... .|..++++
T Consensus       273 -~~~~i~~~~~g~l~v~~~~-~i~~~~p~  299 (300)
T 2qc5_A          273 -EPHGITFGKDGSVWFALKC-KIGKLNLN  299 (300)
T ss_dssp             -CCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred             -ccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence             5789999999997777654 77777754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.44  E-value=1.3e-05  Score=83.09  Aligned_cols=157  Identities=10%  Similarity=0.022  Sum_probs=104.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...++++++|+ |+++...++.|++||..+++.....               .. ..... ++|++    +++.|++++.
T Consensus       133 P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~---------------~~-~~~~~-ia~~~----~g~~l~~~d~  190 (409)
T 3hrp_A          133 MWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVH---------------PG-FKGGK-PAVTK----DKQRVYSIGW  190 (409)
T ss_dssp             EEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEE---------------ET-CCBCB-CEECT----TSSEEEEEBS
T ss_pred             ceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEee---------------cc-CCCCc-eeEec----CCCcEEEEec
Confidence            56778899998 7788878899999999877766544               22 22233 89999    8999988888


Q ss_pred             CC--cEEEEEcCCCcccccCCCCCCcceEEe---cc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEe----
Q psy1242         419 DC--TVLLWHWNARTQSIVGETDTPTPRATL---TG-HEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSL----  488 (540)
Q Consensus       419 Dg--tV~lWd~~~~~~~~~~~~~~~~~~~~l---~~-h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l----  488 (540)
                      ++  .|.+++.....           ....+   .. ....+.+++++|+...|+.+..++.|+.|+..+.....+    
T Consensus       191 ~~~~~I~~~d~~~~~-----------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~  259 (409)
T 3hrp_A          191 EGTHTVYVYMKASGW-----------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE  259 (409)
T ss_dssp             STTCEEEEEEGGGTT-----------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC
T ss_pred             CCCceEEEEEcCCCc-----------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc
Confidence            66  67777754311           11222   12 456678899999544555577788888887643333333    


Q ss_pred             -cCCCCCCCce-EEEEeeC-CCEEEE-ecCCeEEEEecCCcEEEe
Q psy1242         489 -DPPSGFASPE-SVVMSRE-GVIVVN-YERGHIAAFTMNGNRLRH  529 (540)
Q Consensus       489 -~~~~~~~~v~-~l~fspd-g~~l~s-~~dg~I~lw~~~g~~l~~  529 (540)
                       .+.... .+. .++|+|+ +.+.++ ...+.|..|+.+|+....
T Consensus       260 ~~g~~~~-~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~  303 (409)
T 3hrp_A          260 LSGSLGT-NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWF  303 (409)
T ss_dssp             CCSCCCC-SSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE
T ss_pred             ccCCCCC-CccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEE
Confidence             122221 223 9999996 554444 346899999999874433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.44  E-value=1.4e-05  Score=78.87  Aligned_cols=166  Identities=15%  Similarity=0.195  Sum_probs=103.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeec-cCcceEEEEeccCccCCCcEEEE--
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG-HYGVVTCLSRSECNITADCFIAS--  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~-h~~~Vt~l~~sp~~~~dg~~l~s--  415 (540)
                      ...++++++|+ |+++...++.|.+|+.+ ++..... .+.           .+ ....+..++++|    +|+..+|  
T Consensus        88 ~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~~~-~~~-----------~~~~~~~~~~i~~d~----dG~l~~td~  149 (305)
T 3dr2_A           88 TNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHLLV-GRY-----------AGKRLNSPNDLIVAR----DGAIWFTDP  149 (305)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEE-CEE-----------TTEECSCCCCEEECT----TSCEEEECC
T ss_pred             cceeeECCCCC-EEEEECCCCEEEEECCC-CCEEEEE-ecc-----------CCCccCCCCCEEECC----CCCEEEeCc
Confidence            45678899998 56776666889999986 6543222 100           11 123467899999    9988886  


Q ss_pred             --EeC-------------CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC------Cc
Q psy1242         416 --GSA-------------DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL------GP  474 (540)
Q Consensus       416 --gs~-------------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D------g~  474 (540)
                        |..             .+.|..+|..++           +.. .+. .......++|+|+++.|+.+...      +.
T Consensus       150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-----------~~~-~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~  216 (305)
T 3dr2_A          150 PFGLRKPSQGCPADPELAHHSVYRLPPDGS-----------PLQ-RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVE  216 (305)
T ss_dssp             SGGGSCGGGSCCCCCSSSCEEEEEECSSSC-----------CCE-EEE-EESSEEEEEECTTSSEEEEEECCC---CCCE
T ss_pred             CCCccccccccccccccCCCeEEEEcCCCC-----------cEE-EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCE
Confidence              332             134555554321           122 222 33456789999999977776654      67


Q ss_pred             EEEEeCC-CcE--EEEec-CCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEeeecCCccee
Q psy1242         475 VLVHTTF-GDL--LRSLD-PPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQK  538 (540)
Q Consensus       475 v~iw~~~-g~~--~~~l~-~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~~~~~~V~~  538 (540)
                      |.+++.. +.+  .+.+. ...+  .+..+++.++|++.++. .+.|.+|+++|+.+..+.....+.+
T Consensus       217 i~~~~~~~~~l~~~~~~~~~~~~--~pdgi~~d~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~~~~~~  281 (305)
T 3dr2_A          217 ITAFAWRDGALHDRRHFASVPDG--LPDGFCVDRGGWLWSSS-GTGVCVFDSDGQLLGHIPTPGTASN  281 (305)
T ss_dssp             EEEEEEETTEEEEEEEEECCSSS--CCCSEEECTTSCEEECC-SSEEEEECTTSCEEEEEECSSCCCE
T ss_pred             EEEEEecCCCccCCeEEEECCCC--CCCeEEECCCCCEEEec-CCcEEEECCCCCEEEEEECCCceeE
Confidence            8777543 221  11221 1222  46789999999965554 4569999999999888764444444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.39  E-value=0.00016  Score=73.78  Aligned_cols=231  Identities=9%  Similarity=-0.016  Sum_probs=127.7

Q ss_pred             CcceEEEEcCCCCCcccCCCCc---C-CCCCCCCCccccCCCCeeeccCCC-CCCccccccCCCcCcc-eeeEEEEEEEe
Q psy1242         272 HQFAINRWNPDYAASIQSPSYA---E-TPGSPPGNLPLTLDPILTHPTSNN-NAPVPKRHLGDNFSQK-LRVRHNCFVTT  345 (540)
Q Consensus       272 ~D~tv~~W~~~~~~~~~~~~~~---~-~v~~~~~~~~~s~D~~l~~~g~~~-~~~~~~~~~~~~~~~~-~~v~~~~~~~s  345 (540)
                      .+.+|.+||..+.+......-.   . ........+.+++|+..+..++.. ........-....... ..+ -.|+.+.
T Consensus        95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t~~~~~~~i~~-~~~~~~~  173 (373)
T 2mad_H           95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS-PTCYHIH  173 (373)
T ss_pred             CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECCCCEEeEEcCC-CceEEEE
Confidence            4678889998764433221110   0 001123357789998766654321 1111111100000011 111 1345566


Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEE
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW  425 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lW  425 (540)
                      |+++..+++.+.||++.++|. +++.........         .+.+.........+.+    ++..++..+..+.+.+.
T Consensus       174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~---------~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~v~vi  239 (373)
T 2mad_H          174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA---------MLTAAQNLLTQPAQAN----KSGRIVWPVYSGKILQA  239 (373)
T ss_pred             eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc---------cccCCcceeecceeEe----cCCEEEEEcCCceEEEE
Confidence            777666777778999999999 787664331000         0001111112345566    55444444567889998


Q ss_pred             EcCCCcccccCCCCCCcceEEecc----------CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeC-CCcE
Q psy1242         426 HWNARTQSIVGETDTPTPRATLTG----------HEQPVTSVAISAELGLVVSGSQ----------LGPVLVHTT-FGDL  484 (540)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~~~l~~----------h~~~V~~v~~spdg~~lasgs~----------Dg~v~iw~~-~g~~  484 (540)
                      |+......         .+..+.-          .......++++|+++.+..+..          ++.|.+.+. +++.
T Consensus       240 d~~~~~~~---------v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v  310 (373)
T 2mad_H          240 DISAAGAT---------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT  310 (373)
T ss_pred             eccCCcce---------EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence            87643211         1111110          1123445788999887766543          346766544 7888


Q ss_pred             EEEecCCCCCCCceEEEEeeCCC-EEEEe--cCCeEEEEecC-CcEEEe
Q psy1242         485 LRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~fspdg~-~l~s~--~dg~I~lw~~~-g~~l~~  529 (540)
                      +.++....   .+.+++|+|||+ .++++  .++.|.++|+. ++.+..
T Consensus       311 v~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          311 SSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            88886544   468999999999 66664  47999999997 777766

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.38  E-value=4.1e-05  Score=76.54  Aligned_cols=169  Identities=11%  Similarity=0.037  Sum_probs=106.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++++++|+. +++.  ++.|.+||..+++...... ...          ......+..++++|    +|++.++...
T Consensus        92 v~~i~~~~dg~l-~v~~--~~gl~~~d~~~g~~~~~~~-~~~----------~~~~~~~~~i~~d~----~G~l~v~~~~  153 (326)
T 2ghs_A           92 GSALAKISDSKQ-LIAS--DDGLFLRDTATGVLTLHAE-LES----------DLPGNRSNDGRMHP----SGALWIGTMG  153 (326)
T ss_dssp             EEEEEEEETTEE-EEEE--TTEEEEEETTTCCEEEEEC-SST----------TCTTEEEEEEEECT----TSCEEEEEEE
T ss_pred             ceEEEEeCCCeE-EEEE--CCCEEEEECCCCcEEEEee-CCC----------CCCCCCCCCEEECC----CCCEEEEeCC
Confidence            677888999985 4443  3459999998877543221 000          01124688999999    8987765542


Q ss_pred             C----CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeC---CC-c-----E
Q psy1242         419 D----CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVV-SGSQLGPVLVHTT---FG-D-----L  484 (540)
Q Consensus       419 D----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la-sgs~Dg~v~iw~~---~g-~-----~  484 (540)
                      +    ....||.++..           + +..+..+......++|+|+++.++ +.+.++.|.+++.   +| .     .
T Consensus       154 ~~~~~~~~~l~~~~~g-----------~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~  221 (326)
T 2ghs_A          154 RKAETGAGSIYHVAKG-----------K-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV  221 (326)
T ss_dssp             TTCCTTCEEEEEEETT-----------E-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE
T ss_pred             CcCCCCceEEEEEeCC-----------c-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE
Confidence            2    33455554421           1 122223334567899999998664 4455778888764   45 3     2


Q ss_pred             EEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecCCcEEEeee-cCCcceec
Q psy1242         485 LRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMNGNRLRHES-HNDNLQKT  539 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~~l~~~~-~~~~V~~v  539 (540)
                      ...+.....  .+..+++.++|.+.++. .++.|..|+++|+.+..+. ....++++
T Consensus       222 ~~~~~~~~~--~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~  276 (326)
T 2ghs_A          222 FIDSTGIKG--GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCP  276 (326)
T ss_dssp             EEECTTSSS--EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEE
T ss_pred             EEECCCCCC--CCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEE
Confidence            233332233  46789999999877664 4689999999998887776 33345554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.31  E-value=1.3e-05  Score=80.65  Aligned_cols=174  Identities=10%  Similarity=0.031  Sum_probs=104.6

Q ss_pred             EEEEEEEecCCCEEEEEEec-----CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC-Cc
Q psy1242         338 RHNCFVTTVDSRFLLACGFW-----DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA-DC  411 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~-----Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d-g~  411 (540)
                      .+..++++++|+ |+++...     ++.|.+||+.+++.+..+......         ..+...+..+++++    + +.
T Consensus        68 ~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~---------~~~~~~~~~v~vd~----~~g~  133 (343)
T 2qe8_A           68 TVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI---------TLSNSFVNDLAVDL----IHNF  133 (343)
T ss_dssp             CEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---------SCTTCCCCEEEEET----TTTE
T ss_pred             EeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh---------cccccccceEEEec----CCCE
Confidence            367888899987 5666543     578999999999877776321100         12334568899997    5 44


Q ss_pred             EEEEEe---CCCcEEEEEcCCCcccccCCC---CCCc-ceEEecc--------------CCCCEEEEEEcCCCCEEEEEe
Q psy1242         412 FIASGS---ADCTVLLWHWNARTQSIVGET---DTPT-PRATLTG--------------HEQPVTSVAISAELGLVVSGS  470 (540)
Q Consensus       412 ~l~sgs---~DgtV~lWd~~~~~~~~~~~~---~~~~-~~~~l~~--------------h~~~V~~v~~spdg~~lasgs  470 (540)
                      ..++.+   .++.|.+||..+.........   .... ......+              ....+..|+|+|+++.|+.+.
T Consensus       134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~  213 (343)
T 2qe8_A          134 VYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP  213 (343)
T ss_dssp             EEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred             EEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence            556655   688999999865331110000   0000 0000011              112468899999999888887


Q ss_pred             CCCc-EEEEe----CCCcE--------EEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEE
Q psy1242         471 QLGP-VLVHT----TFGDL--------LRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLR  528 (540)
Q Consensus       471 ~Dg~-v~iw~----~~g~~--------~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~  528 (540)
                      .++. +...+    ..+..        +..+ ++.+  .+..++++++|.+.++ ..++.|.+|+. +|+...
T Consensus       214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g--~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~  283 (343)
T 2qe8_A          214 MHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKP--ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL  283 (343)
T ss_dssp             SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECC--SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCC--CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence            7664 32222    11110        0111 1222  3568999999998877 45789999999 786543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.26  E-value=9.5e-05  Score=72.42  Aligned_cols=117  Identities=9%  Similarity=0.063  Sum_probs=81.8

Q ss_pred             EEEEEEe----cCCCEEEEEEecCCcEEEEEcc-CCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCCcE
Q psy1242         339 HNCFVTT----VDSRFLLACGFWDNSFRVFSTD-NARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITADCF  412 (540)
Q Consensus       339 ~~~~~~s----pdg~~llasgs~Dgsv~iwd~~-~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg~~  412 (540)
                      ...++++    ++++.++++...++.|.+|+.+ +++....-          ....+.++. ..+..+++++    +|++
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~----------~~~~~~~~~~~~p~~i~~d~----~G~l  239 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK----------VWGHIPGTHEGGADGMDFDE----DNNL  239 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE----------EEEECCCCSSCEEEEEEEBT----TCCE
T ss_pred             cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccce----------EEEECCCCCCCCCCceEECC----CCCE
Confidence            4567889    9997776777778999999986 45422110          011123444 5678899999    8988


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEeC
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGL-VVSGSQLGPVLVHTT  480 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~-lasgs~Dg~v~iw~~  480 (540)
                      .++...++.|.+||..+           ++.+..+..+...+.+++++++++. +++...++.|..++.
T Consensus       240 ~v~~~~~~~i~~~d~~~-----------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          240 LVANWGSSHIEVFGPDG-----------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEETTTEEEEECTTC-----------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEEEcCCCEEEEEcCCC-----------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            88888889999999763           2334555566678999999999994 455555677766644

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.22  E-value=3.6e-05  Score=75.99  Aligned_cols=152  Identities=9%  Similarity=0.044  Sum_probs=101.3

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      ...+|+++|+.|++++..++.|..|+. +++ ...+               ..+...+.++++++    +|+++++...+
T Consensus        48 egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~---------------~~~~~~~~gl~~d~----dG~l~v~~~~~  106 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVL---------------LDATAFTNGNAVDA----QQRLVHCEHGR  106 (305)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEE---------------EESCSCEEEEEECT----TSCEEEEETTT
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEE---------------eCCCCccceeeECC----CCCEEEEECCC
Confidence            456789999988889888999999998 455 3344               34566789999999    89877666666


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEE----EeC-------------CCcEEEEeC-
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVS----GSQ-------------LGPVLVHTT-  480 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~las----gs~-------------Dg~v~iw~~-  480 (540)
                      +.|.+|+.+. ...        .......+. ...+.+++++++|.++++    |..             .+.|..++. 
T Consensus       107 ~~v~~~~~~g-~~~--------~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~  177 (305)
T 3dr2_A          107 RAITRSDADG-QAH--------LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD  177 (305)
T ss_dssp             TEEEEECTTS-CEE--------EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred             CEEEEECCCC-CEE--------EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence            8899998642 110        000111111 134667999999998886    332             234555555 


Q ss_pred             CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec-C------CeEEEEecCCc
Q psy1242         481 FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE-R------GHIAAFTMNGN  525 (540)
Q Consensus       481 ~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~-d------g~I~lw~~~g~  525 (540)
                      +++.....  ...  .+..++|+|+|+.|+.++ .      +.|.+|++++.
T Consensus       178 ~g~~~~~~--~~~--~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          178 GSPLQRMA--DLD--HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             SCCCEEEE--EES--SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             CCcEEEEe--cCC--CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            56544333  222  468899999999776643 2      68999998743

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.18  E-value=5.5e-05  Score=76.09  Aligned_cols=167  Identities=10%  Similarity=0.037  Sum_probs=101.9

Q ss_pred             EEEEEecCCCEEEEEEe---cCCcEEEEEccCCeEEEEEecccceee--------eeeEEEeec------cCcceEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGF---WDNSFRVFSTDNARIVQIIFGHYGVVT--------SRIVQIIFG------HYGVVTCLSR  402 (540)
Q Consensus       340 ~~~~~spdg~~llasgs---~Dgsv~iwd~~~g~~~~~l~~~~~~v~--------~~~~~~l~~------h~~~Vt~l~~  402 (540)
                      ..+++++++..++++..   .++.|.+||..+++....+.+|.....        +........      ....+..|++
T Consensus       123 ~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~  202 (343)
T 2qe8_A          123 NDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL  202 (343)
T ss_dssp             CEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE
T ss_pred             ceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe
Confidence            45677877666667766   788999999998887766644321100        000000000      1134688999


Q ss_pred             ccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcce--EEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q psy1242         403 SECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR--ATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT  480 (540)
Q Consensus       403 sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~--~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~  480 (540)
                      +|    +|+.|+.+..++. ++|.+....... +.....+..  ....++......++++++|.++++...++.|.+|+.
T Consensus       203 s~----dg~~ly~~~~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          203 DA----ENEWLYLSPMHST-SMYRIKSADLSN-LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CT----TSCEEEEEESSCS-EEEEEEHHHHTC-TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             cc----CCCEEEEEeCCCC-eEEEEEHHHhcC-CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            99    9998888887664 556543210000 000000000  012234445667899999999999999999999998


Q ss_pred             -CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec
Q psy1242         481 -FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE  513 (540)
Q Consensus       481 -~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~  513 (540)
                       +|+.......+. ...+.+++|.++|+++++..
T Consensus       277 ~~G~~~~~~~~~~-~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          277 ADRAYKLLVTDEK-LSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             TTTEEEEEEECGG-GSCEEEEEECTTSCEEEEEC
T ss_pred             CCCCEEEEEECCc-eecCCeeEECCCCcEEEEeC
Confidence             887544443321 12578999999998777743

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.15  E-value=2.2e-07  Score=95.18  Aligned_cols=152  Identities=13%  Similarity=0.078  Sum_probs=76.5

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCc-ceEEEEeccCccCCCcEEEEEeCCCcEEE
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG-VVTCLSRSECNITADCFIASGSADCTVLL  424 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~-~Vt~l~~sp~~~~dg~~l~sgs~DgtV~l  424 (540)
                      .+++ ++++++.|+.|+.||..+|+.+..+.               .+.. .+.   .+|.. .++..+++|+.|+++..
T Consensus        47 ~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~---------------~~~~~~~~---~sp~~-~~~~~v~~g~~dg~v~a  106 (369)
T 2hz6_A           47 VEEP-AFLPDPNDGSLYTLGSKNNEGLTKLP---------------FTIPELVQ---ASPCR-SSDGILYMGKKQDIWYV  106 (369)
T ss_dssp             ---C-CEEECTTTCCEEEC-----CCSEECS---------------CCHHHHHT---TCSCC------CCCCEEEEEEEE
T ss_pred             cCCC-EEEEeCCCCEEEEEECCCCceeeeee---------------ccCccccc---cCceE-ecCCEEEEEeCCCEEEE
Confidence            4565 46777899999999999998766652               1111 110   11110 03446788888999999


Q ss_pred             EEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEe
Q psy1242         425 WHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMS  503 (540)
Q Consensus       425 Wd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fs  503 (540)
                      ||..+++           .+-.+..+.    .+.++|++..+++++.|+.|+.|+. +|+.+..+..+..    ...+++
T Consensus       107 ~D~~tG~-----------~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~  167 (369)
T 2hz6_A          107 IDLLTGE-----------KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPE  167 (369)
T ss_dssp             ECCC-------------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCC
T ss_pred             EECCCCc-----------EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCcccc
Confidence            9987633           333333332    2345678888999999999999875 7876554432111    122233


Q ss_pred             eC----CCEEEEecCCeEEEEecC-CcEEEeeecCCcc
Q psy1242         504 RE----GVIVVNYERGHIAAFTMN-GNRLRHESHNDNL  536 (540)
Q Consensus       504 pd----g~~l~s~~dg~I~lw~~~-g~~l~~~~~~~~V  536 (540)
                      .+    +.+++++.+|.|..||.+ |+.+-......++
T Consensus       168 ~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv  205 (369)
T 2hz6_A          168 DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPV  205 (369)
T ss_dssp             CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCE
T ss_pred             CCccccceEEEECCCCEEEEEECCCCcEEEEecCCCce
Confidence            32    566666778999999985 8877665544443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.12  E-value=0.00067  Score=65.22  Aligned_cols=158  Identities=9%  Similarity=-0.041  Sum_probs=103.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs  417 (540)
                      ...+++++++..|+++...++.|.+++...+.....+               ........++++++    ++..| ++..
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~---------------~~~~~~p~~ia~d~----~~~~lyv~d~   98 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---------------RQDLGSPEGIALDH----LGRTIFWTDS   98 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE---------------CTTCCCEEEEEEET----TTTEEEEEET
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE---------------ECCCCCccEEEEEe----cCCeEEEEEC
Confidence            5678889988778888777899999999755443332               22235678999998    65544 5555


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCcEEEEec-CCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ---LGPVLVHTTFGDLLRSLD-PPSG  493 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~---Dg~v~iw~~~g~~~~~l~-~~~~  493 (540)
                      ..+.|.+++.+...           ..............++++|++..|..+..   .+.|...+.+|.....+. ....
T Consensus        99 ~~~~I~~~~~~g~~-----------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~  167 (267)
T 1npe_A           99 QLDRIEVAKMDGTQ-----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (267)
T ss_dssp             TTTEEEEEETTSCS-----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             CCCEEEEEEcCCCC-----------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCC
Confidence            67899999876421           11112222245689999997665544443   356766666665544442 2222


Q ss_pred             CCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEE
Q psy1242         494 FASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLR  528 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~  528 (540)
                        .+..+++++++..|..+  ..+.|..++++|..+.
T Consensus       168 --~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  202 (267)
T 1npe_A          168 --LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR  202 (267)
T ss_dssp             --CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE
T ss_pred             --CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE
Confidence              57899999988766553  4578999999875443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.09  E-value=0.0001  Score=81.60  Aligned_cols=156  Identities=7%  Similarity=0.019  Sum_probs=95.4

Q ss_pred             EEEEEEEecCCCEEEEEEec----CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFW----DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~----Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      .+..++|||||++|+.+.+.    ..+|+++|+.+|+.+...              +.+  .....++|+     ||+.|
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--------------~~~--~k~~~~~Ws-----Dg~~l  188 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP--------------LKD--VKFSGISWL-----GNEGF  188 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--------------EEE--EESCCCEEE-----TTTEE
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc--------------cCC--ceeccEEEe-----CCCEE
Confidence            35567889999976544433    346999999999865432              011  113466787     57778


Q ss_pred             EEEeCCCc-------------EEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEe-CC---CcE
Q psy1242         414 ASGSADCT-------------VLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGS-QL---GPV  475 (540)
Q Consensus       414 ~sgs~Dgt-------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs-~D---g~v  475 (540)
                      +.++.+..             |.+|++.+....       ..++..... |...+.++.|||||++|+..+ .+   ..|
T Consensus       189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  261 (693)
T 3iuj_A          189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQED-------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL  261 (693)
T ss_dssp             EEEESSCCC-------CCCCEEEEEETTSCGGG-------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred             EEEEecCcccccccccCCCcEEEEEECCCCccc-------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence            77777643             889987663321       122333333 555678999999999775443 22   367


Q ss_pred             EEEeC-CCc-EEEEecCCCCCCCceEEEEeeCCCEEEE-ec----CCeEEEEecCC
Q psy1242         476 LVHTT-FGD-LLRSLDPPSGFASPESVVMSREGVIVVN-YE----RGHIAAFTMNG  524 (540)
Q Consensus       476 ~iw~~-~g~-~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~----dg~I~lw~~~g  524 (540)
                      ++++. ++. ....+..+..  ..... ++++|..|+. +.    .+.|..+++++
T Consensus       262 ~~~d~~~~~~~~~~l~~~~~--~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~  314 (693)
T 3iuj_A          262 YVKDLSQENAPLLTVQGDLD--ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN  314 (693)
T ss_dssp             EEEETTSTTCCCEEEECSSS--SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             EEEECCCCCCceEEEeCCCC--ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            77765 332 3445555544  23444 6777765554 32    36788888874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.02  E-value=9.3e-05  Score=75.66  Aligned_cols=237  Identities=13%  Similarity=0.048  Sum_probs=123.5

Q ss_pred             CcceEEEEcCCCCCcccCCCCc----CCCCCCCCCccccCCCCeeeccCCC-CCCccccccCCC-cCcceeeEEEEEEEe
Q psy1242         272 HQFAINRWNPDYAASIQSPSYA----ETPGSPPGNLPLTLDPILTHPTSNN-NAPVPKRHLGDN-FSQKLRVRHNCFVTT  345 (540)
Q Consensus       272 ~D~tv~~W~~~~~~~~~~~~~~----~~v~~~~~~~~~s~D~~l~~~g~~~-~~~~~~~~~~~~-~~~~~~v~~~~~~~s  345 (540)
                      .+.+|.+||..+.+......-.    ..++.....+.+++|+..+..++.. ........+... ....+.+. .|..+.
T Consensus       107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g~~~~~  185 (386)
T 3sjl_D          107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-DCYHIF  185 (386)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-SEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-Ccceee
Confidence            4678999999876533322110    0112233457788888655443211 111111111100 00011111 122233


Q ss_pred             cCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceE-EEEec-cCccCCCcEEEEEeCCCcE
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVT-CLSRS-ECNITADCFIASGSADCTV  422 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt-~l~~s-p~~~~dg~~l~sgs~DgtV  422 (540)
                      |.|...+++.+.||++.+.++.+ ++.......+           +..-...+. ..+|. +    +|++++ .+.+|+|
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~-----------~~~~~~~~~~~~~~~~~----dG~~~~-vs~~g~V  249 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV-----------FHPEDEFLINHPAYSQK----AGRLVW-PTYTGKI  249 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-----------CSCTTSCBCSCCEEETT----TTEEEE-EBTTSEE
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeEEEeecce-----------eccccccccccceeEcC----CCcEEE-EeCCCEE
Confidence            44432355666788887777765 5543221000           000111121 23554 4    675444 5668999


Q ss_pred             EEEEcCCCcccccCCCCCCcceEEec------c-CCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEe-CCCcE
Q psy1242         423 LLWHWNARTQSIVGETDTPTPRATLT------G-HEQPVTSVAISAELGLVVSGSQ----------LGPVLVHT-TFGDL  484 (540)
Q Consensus       423 ~lWd~~~~~~~~~~~~~~~~~~~~l~------~-h~~~V~~v~~spdg~~lasgs~----------Dg~v~iw~-~~g~~  484 (540)
                      .+.|........      ...+..+.      + .......++++++++.+.....          ...|.+.+ .+++.
T Consensus       250 ~v~d~~~~~~~v------~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv  323 (386)
T 3sjl_D          250 HQIDLSSGDAKF------LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  323 (386)
T ss_dssp             EEEECTTSSCEE------CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             EEEECCCCccee------ecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence            999986533111      01111000      0 1112234677999887766542          13465544 48899


Q ss_pred             EEEecCCCCCCCceEEEEeeCCC-EEEE--ecCCeEEEEecC-CcEEEeeecCC
Q psy1242         485 LRSLDPPSGFASPESVVMSREGV-IVVN--YERGHIAAFTMN-GNRLRHESHND  534 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~fspdg~-~l~s--~~dg~I~lw~~~-g~~l~~~~~~~  534 (540)
                      ++.+....   .+++|++++||+ .|++  +.++.|.++|.. ++.+++....+
T Consensus       324 ~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~  374 (386)
T 3sjl_D          324 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG  374 (386)
T ss_dssp             EEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred             EEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence            98887654   468999999997 5555  347999999986 89988886433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.98  E-value=0.00011  Score=76.23  Aligned_cols=180  Identities=11%  Similarity=0.013  Sum_probs=101.5

Q ss_pred             EEEEecCCCEEEEEEec-CCcEEEEEccCCeEEEEEecccc-e---------ee-e--eeEEEeeccCcceE--------
Q psy1242         341 CFVTTVDSRFLLACGFW-DNSFRVFSTDNARIVQIIFGHYG-V---------VT-S--RIVQIIFGHYGVVT--------  398 (540)
Q Consensus       341 ~~~~spdg~~llasgs~-Dgsv~iwd~~~g~~~~~l~~~~~-~---------v~-~--~~~~~l~~h~~~Vt--------  398 (540)
                      .++++|||++++++... +++|.+.|+.+++.+..+..... .         +. +  ..+..+..-.+.|.        
T Consensus       181 ~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~  260 (426)
T 3c75_H          181 MNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH  260 (426)
T ss_dssp             GSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred             eEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence            45789999987666543 68999999999998887743110 0         00 0  00000000011111        


Q ss_pred             --------EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCC----CCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242         399 --------CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGE----TDTPTPRATLTGHEQPVTSVAISAELGLV  466 (540)
Q Consensus       399 --------~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~----~~~~~~~~~l~~h~~~V~~v~~spdg~~l  466 (540)
                              .+.+.+    ++..++..+..++|.+.|...........    ...........   .....++++|+++.+
T Consensus       261 v~~~p~~~~~~~~~----dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p---~g~~~va~s~dg~rl  333 (426)
T 3c75_H          261 TEDELLINHPAFSL----RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP---GGWQQTAYHRQSDRI  333 (426)
T ss_dssp             CTTSCBCSCCEECT----TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE---CSSSCEEEEGGGTEE
T ss_pred             cCCCceeeEeeecC----CCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc---CCceeeEEcCCCCEE
Confidence                    123344    55555555556666666654321110000    00000000000   111126889998866


Q ss_pred             EEEeC----------CCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCC-EEEEe--cCCeEEEEecC-CcEEEee
Q psy1242         467 VSGSQ----------LGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGV-IVVNY--ERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       467 asgs~----------Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~-~l~s~--~dg~I~lw~~~-g~~l~~~  530 (540)
                      .....          ++.|.+.| .+.+.+.++....   .+.+++|+|||+ .+++.  .++.|.++|+. ++.++++
T Consensus       334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEecccccccccCCCCEEEEEECCCCeEEEEEECCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            55432          34676654 5889998887554   368999999999 77764  47999999987 8888775

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.98  E-value=0.00042  Score=70.71  Aligned_cols=145  Identities=12%  Similarity=-0.038  Sum_probs=93.9

Q ss_pred             ecCCCEEEEEEe-cCC---cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe---
Q psy1242         345 TVDSRFLLACGF-WDN---SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS---  417 (540)
Q Consensus       345 spdg~~llasgs-~Dg---sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs---  417 (540)
                      .|++++++++.. ..+   +|.++|..+++.+..+               .....+  .++++|    ||++++.+.   
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i---------------~~g~~p--~i~~sp----Dg~~lyv~n~~~   87 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV---------------NGGFLP--NPVAAH----SGSEFALASTSF   87 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEe---------------cCCCCC--CeEECC----CCCEEEEEeccc
Confidence            467776555543 233   8899999999988777               332333  899999    999998875   


Q ss_pred             -------CCCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCC
Q psy1242         418 -------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGSQ--LGPVLVHTTF  481 (540)
Q Consensus       418 -------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~  481 (540)
                             .+++|.++|..+.           +.+..+.-.       ...-..++|+|||++|+.++.  ++.|.+.+.+
T Consensus        88 ~~~~rg~~~~~v~viD~~t~-----------~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t  156 (373)
T 2mad_H           88 SRIAKGKRTDYVEVFDPVTF-----------LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG  156 (373)
T ss_pred             cccccCCCCCeEEEEECCCC-----------cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECC
Confidence                   3678999998652           233333211       123457899999999988874  4667664477


Q ss_pred             CcEEEE-ecCCCCCCCceEEEEeeCCC--EEEEecCCeEEEEecCCcEE
Q psy1242         482 GDLLRS-LDPPSGFASPESVVMSREGV--IVVNYERGHIAAFTMNGNRL  527 (540)
Q Consensus       482 g~~~~~-l~~~~~~~~v~~l~fspdg~--~l~s~~dg~I~lw~~~g~~l  527 (540)
                      ++.+.. +....      ++.+.|++.  +++...||.+.+++..|+.+
T Consensus       157 ~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~  199 (373)
T 2mad_H          157 GSSDDQLLSSPT------CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             CCEEeEEcCCCc------eEEEEeCCCceEEEEcCCCCEEEEECCCcEE
Confidence            777777 65322      244556654  23334577777777654444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.98  E-value=0.00017  Score=73.69  Aligned_cols=116  Identities=16%  Similarity=0.051  Sum_probs=84.7

Q ss_pred             EecCCCEEEEEEec----CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe--
Q psy1242         344 TTVDSRFLLACGFW----DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS--  417 (540)
Q Consensus       344 ~spdg~~llasgs~----Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs--  417 (540)
                      ..|+++.++++-..    ++.|.+.|..+++.+..+               .....+  .++++|    ||++++.++  
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I---------------~vG~~P--~va~sp----DG~~lyVan~~   98 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---------------DGGFLP--NPVVAD----DGSFIAHASTV   98 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---------------EECSSC--EEEECT----TSSCEEEEEEE
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE---------------ECCCCC--cEEECC----CCCEEEEEccc
Confidence            36899987776654    789999999999999888               333334  399999    999887765  


Q ss_pred             --------CCCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCcEEEEeC
Q psy1242         418 --------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGSQ--LGPVLVHTT  480 (540)
Q Consensus       418 --------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~  480 (540)
                              .+++|.+||..+           .+.+..+.-.       ...-..++++|||++++.+..  ++.|.+++.
T Consensus        99 ~~r~~~G~~~~~VsviD~~t-----------~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~  167 (386)
T 3sjl_D           99 FSRIARGERTDYVEVFDPVT-----------LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  167 (386)
T ss_dssp             EEETTEEEEEEEEEEECTTT-----------CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             ccccccCCCCCEEEEEECCC-----------CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence                    467899999876           3344444211       123446899999998887764  678877654


Q ss_pred             -CCcEEEEecCC
Q psy1242         481 -FGDLLRSLDPP  491 (540)
Q Consensus       481 -~g~~~~~l~~~  491 (540)
                       +++.+.++..+
T Consensus       168 ~t~~vv~tI~v~  179 (386)
T 3sjl_D          168 EGKAFKRMLDVP  179 (386)
T ss_dssp             TTTEEEEEEECC
T ss_pred             CCCcEEEEEECC
Confidence             88888888653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.86  E-value=1.8e-06  Score=88.35  Aligned_cols=143  Identities=13%  Similarity=0.035  Sum_probs=71.6

Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      ++.. +++|+.|+.|..||..+|+.+..+               ..  +.+.+..+..    ++..+++++.|+.|..||
T Consensus         8 ~~~~-v~~gs~dg~v~a~d~~tG~~~W~~---------------~~--~~~~s~p~~~----~g~~~v~~s~dg~l~a~d   65 (369)
T 2hz6_A            8 PETL-LFVSTLDGSLHAVSKRTGSIKWTL---------------KE--DPVLQVPTHV----EEPAFLPDPNDGSLYTLG   65 (369)
T ss_dssp             CTTE-EEEEETTSEEEEEETTTCCEEEEE---------------EC--CCSCCCC---------CCEEECTTTCCEEEC-
T ss_pred             eCCE-EEEEcCCCEEEEEECCCCCEEEEe---------------cC--CCceecceEc----CCCEEEEeCCCCEEEEEE
Confidence            4553 688889999999999999998877               33  3444444445    677788888999999999


Q ss_pred             cCCCcccccCCCCCCcceEEeccCCC-CEE-EEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEe
Q psy1242         427 WNARTQSIVGETDTPTPRATLTGHEQ-PVT-SVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMS  503 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~-~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fs  503 (540)
                      ..+++           .+..+..+.. .+. +..+. ++..+++|+.|+.++.|+. +|+.+..+..+..      ..++
T Consensus        66 ~~tG~-----------~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~------~~~~  127 (369)
T 2hz6_A           66 SKNNE-----------GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA------DSLS  127 (369)
T ss_dssp             ----C-----------CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------
T ss_pred             CCCCc-----------eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc------cccc
Confidence            86533           2222221110 000 00111 3456778888999998876 7988877765432      3345


Q ss_pred             eCCCEEEE-ecCCeEEEEecC-CcEEEe
Q psy1242         504 REGVIVVN-YERGHIAAFTMN-GNRLRH  529 (540)
Q Consensus       504 pdg~~l~s-~~dg~I~lw~~~-g~~l~~  529 (540)
                      |++..|++ +.++.|+.||.. |+.+-.
T Consensus       128 p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A          128 PSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             -----EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             ccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            67776666 457899999985 765433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.84  E-value=0.00021  Score=72.85  Aligned_cols=73  Identities=7%  Similarity=0.034  Sum_probs=52.6

Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCCE-EEE-e-cCCeEEEEecC
Q psy1242         457 VAISAELGLVVSGSQ---------LGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGVI-VVN-Y-ERGHIAAFTMN  523 (540)
Q Consensus       457 v~~spdg~~lasgs~---------Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~~-l~s-~-~dg~I~lw~~~  523 (540)
                      ++++|+++.+..+..         ++.+.+++ .+++.+.++..+.   .+.+++|+|||+. +++ . .++.|.++|+.
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            678999887765432         12344654 5888888877554   3689999999983 444 5 48999999997


Q ss_pred             -CcEEEeeec
Q psy1242         524 -GNRLRHESH  532 (540)
Q Consensus       524 -g~~l~~~~~  532 (540)
                       ++.+.++.-
T Consensus       346 t~kvv~~I~v  355 (368)
T 1mda_H          346 SDQDQSSVEL  355 (368)
T ss_dssp             SCEEEEECCC
T ss_pred             CCcEEEEEEC
Confidence             777877753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.78  E-value=0.0021  Score=66.58  Aligned_cols=163  Identities=6%  Similarity=-0.038  Sum_probs=103.4

Q ss_pred             EEEEEecCCCEEEEEEecC------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccC-cceEEEEeccCccCCCcE
Q psy1242         340 NCFVTTVDSRFLLACGFWD------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHY-GVVTCLSRSECNITADCF  412 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~D------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~-~~Vt~l~~sp~~~~dg~~  412 (540)
                      ..+..+|+|  +++++..+      |.|.+.|..+++.+..++.             .+.. ..-..+.|+|    +++.
T Consensus       141 h~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~-------------~~~~~~~~Yd~~~~p----~~~~  201 (462)
T 2ece_A          141 HTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI-------------DRGDQYLAYDFWWNL----PNEV  201 (462)
T ss_dssp             EEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS-------------BCTTCCCCCCEEEET----TTTE
T ss_pred             cceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc-------------CCCCccccceEEECC----CCCE
Confidence            344557999  44555444      7899999999999888731             1111 1123478899    8998


Q ss_pred             EEEEe-------------------CCCcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEE--cCCCCEEEEE
Q psy1242         413 IASGS-------------------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAI--SAELGLVVSG  469 (540)
Q Consensus       413 l~sgs-------------------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~--spdg~~lasg  469 (540)
                      +++..                   .+.+|.+||+.+.           +.++++.--  ......+.|  +|+++++..+
T Consensus       202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~  270 (462)
T 2ece_A          202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----------KRIHSLTLGEENRMALELRPLHDPTKLMGFIN  270 (462)
T ss_dssp             EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred             EEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----------cEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence            88885                   3789999999762           344555432  123445655  9999987776


Q ss_pred             e------CCCcEEEEeC-CCcE--EEEe--cCC--CC------------CCCceEEEEeeCCCEEEEe--cCCeEEEEec
Q psy1242         470 S------QLGPVLVHTT-FGDL--LRSL--DPP--SG------------FASPESVVMSREGVIVVNY--ERGHIAAFTM  522 (540)
Q Consensus       470 s------~Dg~v~iw~~-~g~~--~~~l--~~~--~~------------~~~v~~l~fspdg~~l~s~--~dg~I~lw~~  522 (540)
                      +      .+++|.+|.. .|+.  ...+  ...  ..            ...+..|.+|+||++|.++  ..+.|.+|++
T Consensus       271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred             EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            6      4567766422 2432  1221  110  00            0146789999999999885  4689999998


Q ss_pred             C----CcEEEeeec
Q psy1242         523 N----GNRLRHESH  532 (540)
Q Consensus       523 ~----g~~l~~~~~  532 (540)
                      .    .+++.....
T Consensus       351 ~d~~~~~lv~~I~t  364 (462)
T 2ece_A          351 SNPFKPVLTGKVKL  364 (462)
T ss_dssp             SSTTSCEEEEEEEC
T ss_pred             cCCCCcEEEEEEEe
Confidence            4    345544443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.77  E-value=0.0004  Score=68.36  Aligned_cols=149  Identities=17%  Similarity=0.091  Sum_probs=102.2

Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcE
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTV  422 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV  422 (540)
                      ...+++.  +..|+.++.|..+|.. ++....+               ......+.++...+    +|...+ ++  +.+
T Consensus       143 ~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~---------------~~~~~~~~~~~~d~----~g~l~v-~t--~~l  197 (330)
T 3hxj_A          143 IVSEDGT--IYVGSNDNYLYAINPD-GTEKWRF---------------KTNDAITSAASIGK----DGTIYF-GS--DKV  197 (330)
T ss_dssp             EECTTSC--EEEECTTSEEEEECTT-SCEEEEE---------------ECSSCCCSCCEECT----TCCEEE-ES--SSE
T ss_pred             EEcCCCE--EEEEcCCCEEEEECCC-CCEeEEE---------------ecCCCceeeeEEcC----CCEEEE-Ee--CEE
Confidence            4456777  3556678999999998 8777666               33445667777766    676544 44  788


Q ss_pred             EEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEE
Q psy1242         423 LLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVM  502 (540)
Q Consensus       423 ~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~f  502 (540)
                      ..+| ..           ++.+.........+.++...++|.+ ..++.++.+..++.+++.+..+.....  .+.++.+
T Consensus       198 ~~~d-~~-----------g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~g~~~~~~~~~~~--~~~~~~~  262 (330)
T 3hxj_A          198 YAIN-PD-----------GTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINPDGTEKWRFKTGKR--IESSPVI  262 (330)
T ss_dssp             EEEC-TT-----------SCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECTTSCEEEEEECSSC--CCSCCEE
T ss_pred             EEEC-CC-----------CcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECCCCCEeEEeeCCCC--ccccceE
Confidence            8888 33           2233344444456778888888765 456667777766778888777765544  3456677


Q ss_pred             eeCCCEEEEecCCeEEEEecCCcEEEeee
Q psy1242         503 SREGVIVVNYERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       503 spdg~~l~s~~dg~I~lw~~~g~~l~~~~  531 (540)
                      .++|.+.++..+|.|..++.+|+.+....
T Consensus       263 ~~~g~l~v~t~~ggl~~~d~~g~~~~~~~  291 (330)
T 3hxj_A          263 GNTDTIYFGSYDGHLYAINPDGTEKWNFE  291 (330)
T ss_dssp             CTTSCEEEECTTCEEEEECTTSCEEEEEE
T ss_pred             cCCCeEEEecCCCCEEEECCCCcEEEEEE
Confidence            77888777777889999998888877665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.69  E-value=0.0073  Score=57.77  Aligned_cols=159  Identities=8%  Similarity=-0.044  Sum_probs=99.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++++++..|+++....+.|.+++.+... ...+.              .........++++|    ++..|..+..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~--------------~~~~~~P~~i~vd~----~~g~lyv~~~  141 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLF--------------DTGLVNPRGIVTDP----VRGNLYWTDW  141 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE--------------CSSCSSEEEEEEET----TTTEEEEEEC
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEE--------------ECCCCCccEEEEee----CCCEEEEEEC
Confidence            45678899877777777778899999987432 22220              22224568899999    6666555543


Q ss_pred             ---CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCcEEEEecCCCC
Q psy1242         419 ---DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTTFGDLLRSLDPPSG  493 (540)
Q Consensus       419 ---DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~~g~~~~~l~~~~~  493 (540)
                         .+.|..++++...            ...+ .........+++++++..| ++-...+.|.+.+.++.....+.....
T Consensus       142 ~~~~~~I~~~~~dg~~------------~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~  209 (267)
T 1npe_A          142 NRDNPKIETSHMDGTN------------RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ  209 (267)
T ss_dssp             CSSSCEEEEEETTSCC------------CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC
T ss_pred             CCCCcEEEEEecCCCC------------cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC
Confidence               3678888765421            1222 1223457899999987655 444556778877776654433322222


Q ss_pred             CCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         494 FASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                        .+..++.. .+.+.++ ...+.|..++.+ |+.+..+.
T Consensus       210 --~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          210 --YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             --SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             --CceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence              35677764 3434344 346899999997 78887775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.61  E-value=0.0025  Score=61.66  Aligned_cols=158  Identities=9%  Similarity=0.004  Sum_probs=101.5

Q ss_pred             EEEEEecCCCEEEEEEec--CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFW--DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~--Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .-+++++|+. |+++.+.  +++|++.|+.+++.+..+.-             ..+ ...-.+++..     +...++.-
T Consensus        24 ~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------------~~~-~fgeGi~~~g-----~~lyv~t~   83 (266)
T 2iwa_A           24 QGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKM-------------DDS-YFGEGLTLLN-----EKLYQVVW   83 (266)
T ss_dssp             EEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEEC-------------CTT-CCEEEEEEET-----TEEEEEET
T ss_pred             ccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEec-------------CCC-cceEEEEEeC-----CEEEEEEe
Confidence            4567788875 5666543  68999999999999887721             121 1222455542     34445555


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC-
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA-  495 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~-  495 (540)
                      .++.+.++|..+           .+.+.++.--...  ...+++||+.++.+..++.|.+.+. +.+.+.++....... 
T Consensus        84 ~~~~v~viD~~t-----------~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p  150 (266)
T 2iwa_A           84 LKNIGFIYDRRT-----------LSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR  150 (266)
T ss_dssp             TCSEEEEEETTT-----------TEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             cCCEEEEEECCC-----------CcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc
Confidence            689999999876           3455555321111  2345668877766667788877765 778777776432110 


Q ss_pred             --CceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee
Q psy1242         496 --SPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       496 --~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~  531 (540)
                        .++.+.|. +|++.+.. .++.|.+.|+. |+.+..+.
T Consensus       151 ~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          151 VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence              25678888 77655543 57899999996 88887775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.61  E-value=0.0027  Score=61.38  Aligned_cols=144  Identities=6%  Similarity=-0.066  Sum_probs=94.9

Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      ++..|.++.-.++.+.++|..+++.+.++..              + ...  ...+++    ||+.++.+..+++|.+.|
T Consensus        74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~--------------g-~~~--g~glt~----Dg~~l~vs~gs~~l~viD  132 (266)
T 2iwa_A           74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTH--------------Q-MKD--GWGLAT----DGKILYGSDGTSILYEID  132 (266)
T ss_dssp             ETTEEEEEETTCSEEEEEETTTTEEEEEEEC--------------C-SSS--CCEEEE----CSSSEEEECSSSEEEEEC
T ss_pred             eCCEEEEEEecCCEEEEEECCCCcEEEEEEC--------------C-CCC--eEEEEE----CCCEEEEECCCCeEEEEE
Confidence            4666777777889999999999999888821              2 011  233556    777777666788999999


Q ss_pred             cCCCcccccCCCCCCcceEEecc--CC---CCEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCcEEEEecCCC--------
Q psy1242         427 WNARTQSIVGETDTPTPRATLTG--HE---QPVTSVAISAELGLVVSGSQLGPVL-VHTTFGDLLRSLDPPS--------  492 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~--h~---~~V~~v~~spdg~~lasgs~Dg~v~-iw~~~g~~~~~l~~~~--------  492 (540)
                      ..+.           +.+..+.-  +.   ..++.+.+. +|.+.+....++.|. |...+++.+..+....        
T Consensus       133 ~~t~-----------~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~  200 (266)
T 2iwa_A          133 PHTF-----------KLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDE  200 (266)
T ss_dssp             TTTC-----------CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHT
T ss_pred             CCCC-----------cEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccc
Confidence            7652           23333321  11   236677887 776666555567775 4566999988886431        


Q ss_pred             ---CCCCceEEEEeeCCCEEEE-e-cCCeEEEEecC
Q psy1242         493 ---GFASPESVVMSREGVIVVN-Y-ERGHIAAFTMN  523 (540)
Q Consensus       493 ---~~~~v~~l~fspdg~~l~s-~-~dg~I~lw~~~  523 (540)
                         ....+..|+|+|+++.++. + ..+.|...++.
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence               1114689999999886665 4 34677776654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.57  E-value=0.0023  Score=61.47  Aligned_cols=156  Identities=9%  Similarity=0.019  Sum_probs=99.6

Q ss_pred             EEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE-E
Q psy1242         340 NCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS-G  416 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s-g  416 (540)
                      ..+.++ ++. |+.+++.+|  +|+++|+.+|+.+..+.               -. .........+    +++.|.. .
T Consensus        46 qGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~---------------l~-~~~FgeGit~----~g~~ly~lt  103 (262)
T 3nol_A           46 EGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQIE---------------LG-KRYFGEGISD----WKDKIVGLT  103 (262)
T ss_dssp             EEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEEE---------------CC-TTCCEEEEEE----ETTEEEEEE
T ss_pred             ceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEEe---------------cC-CccceeEEEE----eCCEEEEEE
Confidence            445566 564 777877776  89999999999988872               11 2222322333    3344444 4


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA  495 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~  495 (540)
                      -.++.+.++|..+           .+.+.++.-..   ....++++++.|+.+..++.|.+.+. +.+.+.++.......
T Consensus       104 w~~~~v~v~D~~t-----------~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~  169 (262)
T 3nol_A          104 WKNGLGFVWNIRN-----------LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGE  169 (262)
T ss_dssp             SSSSEEEEEETTT-----------CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTE
T ss_pred             eeCCEEEEEECcc-----------CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCc
Confidence            4688999999876           34556654322   12334457777666666777877765 788888876532111


Q ss_pred             ---CceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeec
Q psy1242         496 ---SPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESH  532 (540)
Q Consensus       496 ---~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~  532 (540)
                         .++.+.|. +|++.+. ..++.|.+.|+. |+.+..+..
T Consensus       170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence               23457776 7765554 357899999987 888887753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.55  E-value=0.0016  Score=63.95  Aligned_cols=145  Identities=16%  Similarity=0.094  Sum_probs=101.6

Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      ++.  +..|+.++.|..+|.. |+.....               ..+...+.++...+    ++. |..|+.++.+..+|
T Consensus       107 ~~~--l~v~t~~~~l~~~d~~-g~~~~~~---------------~~~~~~~~~~~~~~----~g~-l~vgt~~~~l~~~d  163 (330)
T 3hxj_A          107 EDI--LYVTSMDGHLYAINTD-GTEKWRF---------------KTKKAIYATPIVSE----DGT-IYVGSNDNYLYAIN  163 (330)
T ss_dssp             TTE--EEEECTTSEEEEECTT-SCEEEEE---------------ECSSCCCSCCEECT----TSC-EEEECTTSEEEEEC
T ss_pred             CCE--EEEEecCCEEEEEcCC-CCEEEEE---------------cCCCceeeeeEEcC----CCE-EEEEcCCCEEEEEC
Confidence            454  4667778999999988 7776555               33444566667766    565 66678889999998


Q ss_pred             cCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCC
Q psy1242         427 WNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREG  506 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg  506 (540)
                      .. +           +.+..+......+.++...+++.+++. +  +.+..++.+|+.+........  .+.+++..++|
T Consensus       164 ~~-g-----------~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d~~g~~~~~~~~~~~--~~~~~~~~~~g  226 (330)
T 3hxj_A          164 PD-G-----------TEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAINPDGTEKWNFYAGYW--TVTRPAISEDG  226 (330)
T ss_dssp             TT-S-----------CEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEECTTSCEEEEECCSSC--CCSCCEECTTS
T ss_pred             CC-C-----------CEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEECCCCcEEEEEccCCc--ceeceEECCCC
Confidence            65 2           223333334445666777777775544 4  667766788888777765554  57888999999


Q ss_pred             CEEEEecCCeEEEEecCCcEEEeee
Q psy1242         507 VIVVNYERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       507 ~~l~s~~dg~I~lw~~~g~~l~~~~  531 (540)
                      .+.++..++.|..++.+|+.+....
T Consensus       227 ~l~v~t~~~gl~~~~~~g~~~~~~~  251 (330)
T 3hxj_A          227 TIYVTSLDGHLYAINPDGTEKWRFK  251 (330)
T ss_dssp             CEEEEETTTEEEEECTTSCEEEEEE
T ss_pred             eEEEEcCCCeEEEECCCCCEeEEee
Confidence            8888777888999998888876665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.52  E-value=0.014  Score=57.60  Aligned_cols=163  Identities=11%  Similarity=-0.014  Sum_probs=100.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCC---eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNA---RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g---~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      ...++|.+++..|+.+....+.|..+++...   .....+              +.........+++++.   ++...++
T Consensus        32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--------------~~~~~~~p~glavd~~---~~~ly~~   94 (316)
T 1ijq_A           32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--------------ISRDIQAPDGLAVDWI---HSNIYWT   94 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--------------ECSSCSCCCEEEEETT---TTEEEEE
T ss_pred             eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--------------EeCCCCCcCEEEEeec---CCeEEEE
Confidence            4567888877777777777889999998751   221222              0222345678888861   3445556


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCcEEEEecCCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL--GPVLVHTTFGDLLRSLDPPSG  493 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D--g~v~iw~~~g~~~~~l~~~~~  493 (540)
                      -...+.|.+.+.+...           ....+.........+++.|.+..|..+...  +.|...+.+|.....+....-
T Consensus        95 d~~~~~I~~~~~~g~~-----------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~  163 (316)
T 1ijq_A           95 DSVLGTVSVADTKGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI  163 (316)
T ss_dssp             ETTTTEEEEEETTSSS-----------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred             ECCCCEEEEEeCCCCc-----------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCC
Confidence            5678899999876421           112222233567899999876655544433  567666677776655532221


Q ss_pred             CCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242         494 FASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~  530 (540)
                       ..+..|++++++..|..+  ..+.|..++++|.....+
T Consensus       164 -~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~  201 (316)
T 1ijq_A          164 -QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  201 (316)
T ss_dssp             -SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             -CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence             157899999987766654  457899999987544433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.50  E-value=0.0017  Score=67.23  Aligned_cols=114  Identities=18%  Similarity=0.024  Sum_probs=81.8

Q ss_pred             cCCCEEEEEEecC----CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe----
Q psy1242         346 VDSRFLLACGFWD----NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS----  417 (540)
Q Consensus       346 pdg~~llasgs~D----gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs----  417 (540)
                      +++++++++...+    ++|.++|..+++.+..+               .--..+  .++++|    ||++|+.+.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I---------------~vG~~P--gia~Sp----Dgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT---------------DGGFLP--HPVAAE----DGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE---------------EECSSC--EEEECT----TSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE---------------ECCCCC--ceEECC----CCCEEEEEecccc
Confidence            5777766776644    79999999999999888               322334  899999    999887775    


Q ss_pred             ------CCCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCcEEEEe-CC
Q psy1242         418 ------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGSQ--LGPVLVHT-TF  481 (540)
Q Consensus       418 ------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs~--Dg~v~iw~-~~  481 (540)
                            .++.|.++|..+.           +.+..+.--       ......++++|||++++.+..  ++.|.+.+ .+
T Consensus       141 ~~~~G~~~~~VsviD~~t~-----------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTF-----------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTC-----------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             ccccCCCCCEEEEEECCCC-----------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence                  4678999998763           344444211       122346799999999888774  56786654 58


Q ss_pred             CcEEEEecCC
Q psy1242         482 GDLLRSLDPP  491 (540)
Q Consensus       482 g~~~~~l~~~  491 (540)
                      ++.+.++...
T Consensus       210 ~kvv~~I~v~  219 (426)
T 3c75_H          210 KTFDRMLDVP  219 (426)
T ss_dssp             TEEEEEEECC
T ss_pred             CeEEEEEEcC
Confidence            8888888753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.48  E-value=0.011  Score=59.31  Aligned_cols=159  Identities=8%  Similarity=-0.012  Sum_probs=102.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...++|.+....|+.+-...+.|..+++..+.....+               .........+++.+.   ++...++-..
T Consensus        75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---------------~~~~~~p~glavd~~---~g~ly~~d~~  136 (349)
T 3v64_C           75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV---------------STGLESPGGLAVDWV---HDKLYWTDSG  136 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CSSCSCCCEEEEETT---TTEEEEEETT
T ss_pred             eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE---------------eCCCCCccEEEEecC---CCeEEEEcCC
Confidence            4667888877777777777888999998865543333               222345578888872   4555566666


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCC-CcEEEEeCCCcEEEEecCCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG-SQL-GPVLVHTTFGDLLRSLDPPSGFAS  496 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg-s~D-g~v~iw~~~g~~~~~l~~~~~~~~  496 (540)
                      .+.|.+.+++...           ....+...-.....++++|.+..|... ... +.|...+.+|.....+..... ..
T Consensus       137 ~~~I~~~~~dG~~-----------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~-~~  204 (349)
T 3v64_C          137 TSRIEVANLDGAH-----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL-FW  204 (349)
T ss_dssp             TTEEEEEETTSCS-----------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSC-SC
T ss_pred             CCeEEEEcCCCCc-----------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC-CC
Confidence            7889999876421           112223334567899999966655444 444 667666677766555533221 25


Q ss_pred             ceEEEEeeCCCEEEEe--cCCeEEEEecCCcEE
Q psy1242         497 PESVVMSREGVIVVNY--ERGHIAAFTMNGNRL  527 (540)
Q Consensus       497 v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l  527 (540)
                      +..|+++|++..|..+  ..+.|..++++|...
T Consensus       205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~  237 (349)
T 3v64_C          205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  237 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cceEEEeCCCCEEEEEECCCCEEEEEeCCCCce
Confidence            7899999877766654  457899999987543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.47  E-value=0.0075  Score=57.84  Aligned_cols=142  Identities=11%  Similarity=0.043  Sum_probs=89.5

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEE
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLW  425 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lW  425 (540)
                      +++..|.+..-.++.+.++|..+++.+.++..             .+     ....+++    +++.|+.+..++.|.++
T Consensus        94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~-------------~~-----eG~glt~----dg~~L~~SdGs~~i~~i  151 (262)
T 3nol_A           94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY-------------DG-----EGWGLTH----NDQYLIMSDGTPVLRFL  151 (262)
T ss_dssp             EETTEEEEEESSSSEEEEEETTTCCEEEEEEC-------------SS-----CCCCEEE----CSSCEEECCSSSEEEEE
T ss_pred             EeCCEEEEEEeeCCEEEEEECccCcEEEEEEC-------------CC-----CceEEec----CCCEEEEECCCCeEEEE
Confidence            35666777776789999999999999988821             12     1123334    67777666667788888


Q ss_pred             EcCCCcccccCCCCCCcceEEecc--CC---CCEEEEEEcCCCCEEEEEeCCCcEEE-EeCCCcEEEEecCCC-------
Q psy1242         426 HWNARTQSIVGETDTPTPRATLTG--HE---QPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSLDPPS-------  492 (540)
Q Consensus       426 d~~~~~~~~~~~~~~~~~~~~l~~--h~---~~V~~v~~spdg~~lasgs~Dg~v~i-w~~~g~~~~~l~~~~-------  492 (540)
                      |..+.           +.+..+.-  ..   ..++.+.+. +|++.+..-.+..|.+ +..+|+.+..+....       
T Consensus       152 Dp~T~-----------~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~  219 (262)
T 3nol_A          152 DPESL-----------TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP  219 (262)
T ss_dssp             CTTTC-----------SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS
T ss_pred             cCCCC-----------eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc
Confidence            87652           33333321  11   234556665 7766655555667754 556999988876531       


Q ss_pred             ---CCCCceEEEEeeCCCEEEEecCCeEEEEe
Q psy1242         493 ---GFASPESVVMSREGVIVVNYERGHIAAFT  521 (540)
Q Consensus       493 ---~~~~v~~l~fspdg~~l~s~~dg~I~lw~  521 (540)
                         .....+.||++|+++.|...+..-=++|.
T Consensus       220 ~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e  251 (262)
T 3nol_A          220 LPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE  251 (262)
T ss_dssp             CCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             ccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence               01146889999988877664444333443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.41  E-value=0.0042  Score=64.29  Aligned_cols=154  Identities=12%  Similarity=0.077  Sum_probs=99.9

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCC----eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC--
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNA----RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD--  419 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g----~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D--  419 (540)
                      +++++|++.|..+++|.|+|+.+.    +..++++..  .+..+     .+ ...-..+...|    +| .++++..+  
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~--~~~~~-----~g-~s~Ph~~~~~p----dG-i~Vs~~g~~~  159 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPE--EVKKV-----SG-YSRLHTVHCGP----DA-IYISALGNEE  159 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHH--HHHHH-----HC-EEEEEEEEECS----SC-EEEEEEEETT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechh--hcccc-----cC-CCcccceeECC----Ce-EEEEcCCCcC
Confidence            789999999999999999999754    555555200  00000     01 11234566778    88 66666555  


Q ss_pred             ----CcEEEEEcCCCcccccCCCCCCcceEEecc--CC-CCEEEEEEcCCCCEEEEEe-------------------CCC
Q psy1242         420 ----CTVLLWHWNARTQSIVGETDTPTPRATLTG--HE-QPVTSVAISAELGLVVSGS-------------------QLG  473 (540)
Q Consensus       420 ----gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~-~~V~~v~~spdg~~lasgs-------------------~Dg  473 (540)
                          +.|.+.|..+           .+.+..+..  .. ..-..+.|+|+++.+++..                   .+.
T Consensus       160 g~~~g~v~vlD~~T-----------~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d  228 (462)
T 2ece_A          160 GEGPGGILMLDHYS-----------FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGN  228 (462)
T ss_dssp             SCSCCEEEEECTTT-----------CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCC
T ss_pred             CCCCCeEEEEECCC-----------CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCC
Confidence                7899999775           344555531  11 1223578899999888885                   367


Q ss_pred             cEEEEeC-CCcEEEEecCCCCCCCceEEEE--eeCCCEEEE--e-----cCCeEEEEecC
Q psy1242         474 PVLVHTT-FGDLLRSLDPPSGFASPESVVM--SREGVIVVN--Y-----ERGHIAAFTMN  523 (540)
Q Consensus       474 ~v~iw~~-~g~~~~~l~~~~~~~~v~~l~f--spdg~~l~s--~-----~dg~I~lw~~~  523 (540)
                      +|.+|+. +++.+.++........+..+.|  +|+|+++..  .     .+++|.+|..+
T Consensus       229 ~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d  288 (462)
T 2ece_A          229 RIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE  288 (462)
T ss_dssp             EEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred             EEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence            8999976 6777888876421113456666  999997765  3     45688777655

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.40  E-value=0.0076  Score=66.56  Aligned_cols=178  Identities=12%  Similarity=0.096  Sum_probs=104.5

Q ss_pred             EEEEecCCCEEEEEEecCC-------------------cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242         341 CFVTTVDSRFLLACGFWDN-------------------SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS  401 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dg-------------------sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~  401 (540)
                      ..++.|++.. +..+..++                   +|..+|.++|+.+..+.........      ......+....
T Consensus       239 ~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd------~~~~~~~~l~d  311 (689)
T 1yiq_A          239 SFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD------YTATQHMILAE  311 (689)
T ss_dssp             CEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC------CCCCSCEEEEE
T ss_pred             ceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc------ccCCCCcEEEe
Confidence            3566788774 66776665                   4999999999998777321000000      00111222223


Q ss_pred             eccCccCCCc---EEEEEeCCCcEEEEEcCCCcccccCC--C---------CCCcce---------------EEec---c
Q psy1242         402 RSECNITADC---FIASGSADCTVLLWHWNARTQSIVGE--T---------DTPTPR---------------ATLT---G  449 (540)
Q Consensus       402 ~sp~~~~dg~---~l~sgs~DgtV~lWd~~~~~~~~~~~--~---------~~~~~~---------------~~l~---~  449 (540)
                      ...    +|+   .++.++.+|.+.++|..+++......  .         ..+.++               ....   |
T Consensus       312 ~~~----~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G  387 (689)
T 1yiq_A          312 LPI----DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG  387 (689)
T ss_dssp             EEE----TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred             ecc----CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence            333    554   78889999999999987643210000  0         000000               0000   0


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEeC-CCc
Q psy1242         450 HEQPVTSVAISAELGLVVSGSQ---------------------------------------------LGPVLVHTT-FGD  483 (540)
Q Consensus       450 h~~~V~~v~~spdg~~lasgs~---------------------------------------------Dg~v~iw~~-~g~  483 (540)
                      .. .-..++++|+..++++.+.                                             +|.|..|+. +|+
T Consensus       388 g~-~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~  466 (689)
T 1yiq_A          388 AH-DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ  466 (689)
T ss_dssp             SS-CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred             cc-CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence            00 0123688898887776532                                             366777876 899


Q ss_pred             EEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecC
Q psy1242         484 LLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN  533 (540)
Q Consensus       484 ~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~  533 (540)
                      .+.++..+..   +..-.++..|.+|+.+ .||.++.||.+ |+.|-++...
T Consensus       467 ~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          467 AAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            8888766542   3344666777777775 58999999987 9998877643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.35  E-value=0.0069  Score=66.79  Aligned_cols=178  Identities=12%  Similarity=0.090  Sum_probs=105.1

Q ss_pred             EEEEecCCCEEEEEEecCC-------------------cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242         341 CFVTTVDSRFLLACGFWDN-------------------SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS  401 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dg-------------------sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~  401 (540)
                      .+++.+++.. +..+..++                   +|..+|..+|+.+..++.......     .+. .......+.
T Consensus       247 ~~~~d~~~~~-vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w-----d~~-~~~~p~l~~  319 (677)
T 1kb0_A          247 SMTFDAELNT-MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW-----DYT-STQPMILAD  319 (677)
T ss_dssp             CEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS-----CCC-CCSCCEEEE
T ss_pred             ceeEcCCCCE-EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc-----ccc-cCCCcEEEe
Confidence            3566788875 45555443                   599999999998877632100000     000 011222333


Q ss_pred             eccCccCCC---cEEEEEeCCCcEEEEEcCCCcccccCC--C--------CCCcceE------------Eec---cCCCC
Q psy1242         402 RSECNITAD---CFIASGSADCTVLLWHWNARTQSIVGE--T--------DTPTPRA------------TLT---GHEQP  453 (540)
Q Consensus       402 ~sp~~~~dg---~~l~sgs~DgtV~lWd~~~~~~~~~~~--~--------~~~~~~~------------~l~---~h~~~  453 (540)
                      ...    +|   ..++.++.+|.+.++|..+++......  .        ..+.++.            .+.   |... 
T Consensus       320 ~~~----dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~-  394 (677)
T 1kb0_A          320 IKI----AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN-  394 (677)
T ss_dssp             EEE----TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-
T ss_pred             ccc----CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC-
Confidence            444    66   678999999999999987643211000  0        0000000            000   0000 


Q ss_pred             EEEEEEcCCCCEEEEEeCC-------------------------------------------CcEEEEeC-CCcEEEEec
Q psy1242         454 VTSVAISAELGLVVSGSQL-------------------------------------------GPVLVHTT-FGDLLRSLD  489 (540)
Q Consensus       454 V~~v~~spdg~~lasgs~D-------------------------------------------g~v~iw~~-~g~~~~~l~  489 (540)
                      -..++++|+..++++.+.+                                           |.|..|+. +|+.+..+.
T Consensus       395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~  474 (677)
T 1kb0_A          395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE  474 (677)
T ss_dssp             SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred             CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC
Confidence            0257889998888776432                                           66777765 898887776


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecC
Q psy1242         490 PPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN  533 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~  533 (540)
                      ...   ++....++.+|..++.+ .+|.+++||.. |+.+-++...
T Consensus       475 ~~~---~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          475 HVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             ESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCC---CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence            433   34555677777777765 58999999986 9998887633

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.33  E-value=0.028  Score=53.91  Aligned_cols=133  Identities=8%  Similarity=0.006  Sum_probs=86.0

Q ss_pred             ecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEE
Q psy1242         345 TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLL  424 (540)
Q Consensus       345 spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~l  424 (540)
                      ++++..|.+..-.++.+.++|.++++.+.++..             .++ +  ..++  +    +++.|+.+..++.|.+
T Consensus       102 t~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-------------~~e-G--wGLt--~----Dg~~L~vSdGs~~l~~  159 (268)
T 3nok_A          102 ASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY-------------SGE-G--WGLC--Y----WNGKLVRSDGGTMLTF  159 (268)
T ss_dssp             EECSSCEEEEESSSCEEEEEETTTTEEEEEEEC-------------SSC-C--CCEE--E----ETTEEEEECSSSEEEE
T ss_pred             EEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC-------------CCc-e--eEEe--c----CCCEEEEECCCCEEEE
Confidence            345666777777899999999999999998831             121 1  2333  4    6777777777889999


Q ss_pred             EEcCCCcccccCCCCCCcceEEec--cCC---CCEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCcEEEEecCC-------
Q psy1242         425 WHWNARTQSIVGETDTPTPRATLT--GHE---QPVTSVAISAELGLVVSGSQLGPVL-VHTTFGDLLRSLDPP-------  491 (540)
Q Consensus       425 Wd~~~~~~~~~~~~~~~~~~~~l~--~h~---~~V~~v~~spdg~~lasgs~Dg~v~-iw~~~g~~~~~l~~~-------  491 (540)
                      +|..+.           +.+..+.  .+.   ..++.+.|. +|++.|..-.+..|. |...+|+.+..+...       
T Consensus       160 iDp~T~-----------~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~  227 (268)
T 3nok_A          160 HEPDGF-----------ALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA  227 (268)
T ss_dssp             ECTTTC-----------CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT
T ss_pred             EcCCCC-----------eEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc
Confidence            987652           3333332  122   234667776 776665554566664 455699998877642       


Q ss_pred             ----CCCCCceEEEEeeCCCEEEE
Q psy1242         492 ----SGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       492 ----~~~~~v~~l~fspdg~~l~s  511 (540)
                          ......+.||++|+++.|..
T Consensus       228 ~~~~~~~~vlNGIA~dp~~~rlfV  251 (268)
T 3nok_A          228 GQVTNPEAVLNGIAVEPGSGRIFM  251 (268)
T ss_dssp             TTCCCTTCCEEEEEECTTTCCEEE
T ss_pred             ccccCcCCceEEEEEcCCCCEEEE
Confidence                11114689999998665554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.32  E-value=0.0064  Score=58.40  Aligned_cols=149  Identities=12%  Similarity=0.081  Sum_probs=97.0

Q ss_pred             CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEc
Q psy1242         348 SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHW  427 (540)
Q Consensus       348 g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~  427 (540)
                      +..|+.+.+.+|.|+++|+++|+.+..+ -             ... ..--.++...     ++..+..-.++.+.++|.
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-------------~~~-~FgeGit~~g-----~~Ly~ltw~~~~v~V~D~  123 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWME-R-------------LGN-IFAEGLASDG-----ERLYQLTWTEGLLFTWSG  123 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEE-E-------------CTT-CCEEEEEECS-----SCEEEEESSSCEEEEEET
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-------------CCC-cceeEEEEeC-----CEEEEEEccCCEEEEEEC
Confidence            4568889989999999999999887654 1             211 1112344432     344444557899999998


Q ss_pred             CCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC---CceEEEEe
Q psy1242         428 NARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA---SPESVVMS  503 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~---~v~~l~fs  503 (540)
                      .+           .+.+.++.--. .  ...++++++.|+.+..++.|.+.+. +.+.+.++.......   .++.+.|.
T Consensus       124 ~T-----------l~~~~ti~~~~-e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~  189 (268)
T 3nok_A          124 MP-----------PQRERTTRYSG-E--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA  189 (268)
T ss_dssp             TT-----------TEEEEEEECSS-C--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             Cc-----------CcEEEEEeCCC-c--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe
Confidence            76           34555554321 1  1233357787777777888887764 788888776533211   23567776


Q ss_pred             eCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         504 REGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       504 pdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                       +|++.+. ..++.|.+.|+. |+.+..+.
T Consensus       190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Id  218 (268)
T 3nok_A          190 -NGVIYANIWHSSDVLEIDPATGTVVGVID  218 (268)
T ss_dssp             -TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred             -CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence             7765554 357899999987 88888775

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.30  E-value=0.018  Score=58.67  Aligned_cols=159  Identities=8%  Similarity=-0.004  Sum_probs=100.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...++|.+.+..|+.+-...+.|..++.+.+.....+               .........+++++.   .+.+.++-..
T Consensus       118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---------------~~~~~~p~glavd~~---~g~lY~~d~~  179 (386)
T 3v65_B          118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV---------------STGLESPGGLAVDWV---HDKLYWTDSG  179 (386)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE---------------CSSCSCCCCEEEETT---TTEEEEEETT
T ss_pred             cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE---------------eCCCCCccEEEEEeC---CCeEEEEcCC
Confidence            4567888877777777777889999998865543333               222334567888872   3455556566


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCcEEEEecCCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QL-GPVLVHTTFGDLLRSLDPPSGFAS  496 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~D-g~v~iw~~~g~~~~~l~~~~~~~~  496 (540)
                      .+.|.+.+++...           ....+...-.....+++.|.+..|.... .. +.|...+.+|.....+....- ..
T Consensus       180 ~~~I~~~~~dg~~-----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~-~~  247 (386)
T 3v65_B          180 TSRIEVANLDGAH-----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL-FW  247 (386)
T ss_dssp             TTEEEECBTTSCS-----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-SC
T ss_pred             CCeEEEEeCCCCc-----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC-CC
Confidence            7788887765421           1222233345678999998766555444 33 566666666665544432211 14


Q ss_pred             ceEEEEeeCCCEEEEe--cCCeEEEEecCCcEE
Q psy1242         497 PESVVMSREGVIVVNY--ERGHIAAFTMNGNRL  527 (540)
Q Consensus       497 v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l  527 (540)
                      +..|+|+|++..|..+  ..+.|..++++|...
T Consensus       248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~  280 (386)
T 3v65_B          248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR  280 (386)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred             eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence            7899999877766654  457899999887543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.30  E-value=0.0028  Score=67.76  Aligned_cols=145  Identities=11%  Similarity=-0.005  Sum_probs=98.2

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe-c-cCccCCCcEEEEEe------
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR-S-ECNITADCFIASGS------  417 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~-s-p~~~~dg~~l~sgs------  417 (540)
                      +||++++++...++.|.+.|+.+.++.+.++-             . .......+++ + |    ++++++.++      
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------------p-~g~~phg~~~~~~p----~~~~v~~~~~~~~p~  160 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------------P-NAKGIHGLRPQKWP----RSNYVFCNGEDETPL  160 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------------S-SCCSEEEEEECCSS----BCSEEEEEECSCEES
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------------C-CCCCCcceeeeecC----CCcEEEEeccccccc
Confidence            48999888888888899999999998875510             1 2234667787 5 8    888988885      


Q ss_pred             ------------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC------------
Q psy1242         418 ------------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG------------  473 (540)
Q Consensus       418 ------------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg------------  473 (540)
                                  .++.+.+.|..+.           +.+.++.--. .-..++++|+|+++++.+.+.            
T Consensus       161 ~~dg~~l~~~~~~~~~vtvID~~t~-----------~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~  228 (595)
T 1fwx_A          161 VNDGTNMEDVANYVNVFTAVDADKW-----------EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAA  228 (595)
T ss_dssp             SCSSSSTTCGGGEEEEEEEEETTTT-----------EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCC
T ss_pred             CCCCcccccccccCceEEEEECCCC-----------eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccc
Confidence                        2457888887652           3333332111 234577899999988888553            


Q ss_pred             --------------------------cEEEEe-CC--CcE-EEEecCCCCCCCceEEEEeeCCCEEEEec--CCeEEEEe
Q psy1242         474 --------------------------PVLVHT-TF--GDL-LRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFT  521 (540)
Q Consensus       474 --------------------------~v~iw~-~~--g~~-~~~l~~~~~~~~v~~l~fspdg~~l~s~~--dg~I~lw~  521 (540)
                                                .|.|-+ .+  ++. ++.+....   .+.++.++|||+++++++  +.+|.++|
T Consensus       229 ~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid  305 (595)
T 1fwx_A          229 EMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLD  305 (595)
T ss_dssp             SEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred             ccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence                                      233322 22  333 44554433   357899999999888753  68899999


Q ss_pred             cC
Q psy1242         522 MN  523 (540)
Q Consensus       522 ~~  523 (540)
                      ++
T Consensus       306 ~~  307 (595)
T 1fwx_A          306 VT  307 (595)
T ss_dssp             GG
T ss_pred             Cc
Confidence            87

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.22  E-value=0.0077  Score=59.41  Aligned_cols=166  Identities=10%  Similarity=-0.016  Sum_probs=92.1

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee-eeeE----EEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT-SRIV----QIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~-~~~~----~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      ++++.++|+. +.++..++.|..|+..+++.. .+......-. ..+.    .........+.++++.+    ++..|+.
T Consensus        23 ~i~~d~~g~~-l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~----~~g~l~v   96 (322)
T 2fp8_A           23 SFTFDSTNKG-FYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL----QNNQLYI   96 (322)
T ss_dssp             CEECCTTCSS-EEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET----TTTEEEE
T ss_pred             EEEEcCCCCE-EEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcC----CCCcEEE
Confidence            4567888883 567778899999998765533 2310000000 0000    00001123578899986    3445555


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceE-Eecc-CCCCEEEEEEcC-CCCEEEEEeC-----------------CCcE
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRA-TLTG-HEQPVTSVAISA-ELGLVVSGSQ-----------------LGPV  475 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~-~l~~-h~~~V~~v~~sp-dg~~lasgs~-----------------Dg~v  475 (540)
                      +...+.+..+|..+...         +.+. ...+ .......+++.+ +|.+.++-..                 +|.|
T Consensus        97 ~d~~~~i~~~d~~~g~~---------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHA---------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             EETTTEEEEECTTCEEC---------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             EECCCCEEEEeCCCCEE---------EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence            55555677777553211         0110 1111 123467899999 9987776543                 3556


Q ss_pred             EEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242         476 LVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG  524 (540)
Q Consensus       476 ~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g  524 (540)
                      ..++. +++....... ..  .+..|+++++|+.|+.+  ..+.|..|++++
T Consensus       168 ~~~d~~~~~~~~~~~~-~~--~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          168 IKYDPSTKETTLLLKE-LH--VPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEETTTTEEEEEEEE-ES--CCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EEEeCCCCEEEEeccC-Cc--cCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            66665 3443222221 11  35789999999866554  357899999875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.21  E-value=0.025  Score=55.72  Aligned_cols=155  Identities=10%  Similarity=0.115  Sum_probs=95.7

Q ss_pred             EEEEEEec-CCCEEEEEEec-----------------CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEE
Q psy1242         339 HNCFVTTV-DSRFLLACGFW-----------------DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCL  400 (540)
Q Consensus       339 ~~~~~~sp-dg~~llasgs~-----------------Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l  400 (540)
                      ...+++.+ +|+ +.++...                 ++.|..+|..+++.....                ........|
T Consensus       128 p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----------------~~~~~p~gi  190 (322)
T 2fp8_A          128 LYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL----------------KELHVPGGA  190 (322)
T ss_dssp             EEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE----------------EEESCCCEE
T ss_pred             cceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec----------------cCCccCcce
Confidence            46678889 898 4454322                 366888887766643222                112345679


Q ss_pred             EeccCccCCCcEEEEE-eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC--------
Q psy1242         401 SRSECNITADCFIASG-SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ--------  471 (540)
Q Consensus       401 ~~sp~~~~dg~~l~sg-s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~--------  471 (540)
                      +++|    +|+.|..+ +..+.|.++++.....        +. ...+....+ ...+++.++|.+.++...        
T Consensus       191 a~~~----dg~~lyv~d~~~~~I~~~~~~~~~~--------~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~  256 (322)
T 2fp8_A          191 EVSA----DSSFVLVAEFLSHQIVKYWLEGPKK--------GT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG  256 (322)
T ss_dssp             EECT----TSSEEEEEEGGGTEEEEEESSSTTT--------TC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred             EECC----CCCEEEEEeCCCCeEEEEECCCCcC--------Cc-cceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence            9999    88865544 5678999998764210        11 111111223 778999999987776654        


Q ss_pred             --CCcEEEEeCCCcEEEEecCCCC--CCCceEEEEeeCCCEEEEe-cCCeEEEEecCCc
Q psy1242         472 --LGPVLVHTTFGDLLRSLDPPSG--FASPESVVMSREGVIVVNY-ERGHIAAFTMNGN  525 (540)
Q Consensus       472 --Dg~v~iw~~~g~~~~~l~~~~~--~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~g~  525 (540)
                        .+.|..++.+|+.+..+..+.+  ...+.++++ .+|++.++. ..+.|..+++..+
T Consensus       257 ~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          257 RVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             CEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             CCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence              3556667788998888876542  114667776 466655553 5678998887644

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.18  E-value=0.02  Score=57.60  Aligned_cols=132  Identities=13%  Similarity=0.083  Sum_probs=83.5

Q ss_pred             EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCc
Q psy1242         352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNART  431 (540)
Q Consensus       352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~  431 (540)
                      +..++.++.+..+|..+|+.+...               .  .....++..      ++..+..++.++.+..+|..++.
T Consensus       242 v~~~~~~g~l~~~d~~tG~~~w~~---------------~--~~~~~~~~~------~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          242 VFALAYNGNLTALDLRSGQIMWKR---------------E--LGSVNDFIV------DGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             EEEECTTSCEEEEETTTCCEEEEE---------------C--CCCEEEEEE------ETTEEEEEETTCCEEEEETTTCC
T ss_pred             EEEEecCcEEEEEECCCCcEEeec---------------c--CCCCCCceE------ECCEEEEEcCCCeEEEEECCCCc
Confidence            456667899999999999887655               1  122334443      34577788889999999987632


Q ss_pred             ccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCcEEEEecCCCCCCCceEEEEeeCCCEE
Q psy1242         432 QSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQLGPVLVHT-TFGDLLRSLDPPSGFASPESVVMSREGVIV  509 (540)
Q Consensus       432 ~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~-~~g~~~~~l~~~~~~~~v~~l~fspdg~~l  509 (540)
                                 .+-... .....+.....  .+..|+.++.+|.+.+++ .+|+.+........  .+.+.....++.++
T Consensus       299 -----------~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~--~~~~~~~~~~~~l~  363 (376)
T 3q7m_A          299 -----------TLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS--GFQTEPVAADGKLL  363 (376)
T ss_dssp             -----------EEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT--CBCSCCEEETTEEE
T ss_pred             -----------EEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC--cceeCCEEECCEEE
Confidence                       222222 11112222222  246788889999998876 48998877765433  22222222466666


Q ss_pred             EEecCCeEEEEe
Q psy1242         510 VNYERGHIAAFT  521 (540)
Q Consensus       510 ~s~~dg~I~lw~  521 (540)
                      +...+|.|+.|+
T Consensus       364 v~~~~G~l~~~~  375 (376)
T 3q7m_A          364 IQAKDGTVYSIT  375 (376)
T ss_dssp             EEBTTSCEEEEE
T ss_pred             EEeCCCEEEEEe
Confidence            667788998886

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.16  E-value=0.0021  Score=68.73  Aligned_cols=128  Identities=9%  Similarity=-0.043  Sum_probs=78.5

Q ss_pred             ceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCCCcccccCCCCCCc-ceEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy1242         396 VVTCLSRSECNITADCFIASGS-ADCTVLLWHWNARTQSIVGETDTPT-PRATLTGHEQPVTSVAISAELGLVVSGSQLG  473 (540)
Q Consensus       396 ~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~~~~~~~~-~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg  473 (540)
                      ...++.++|    ||++++.++ .+.+|.++|+.+......++-.... ....+ .-......++|+++|...++.--|+
T Consensus       278 ~PhGv~~sP----DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~lds  352 (595)
T 1fwx_A          278 NPHGCNMAP----DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDS  352 (595)
T ss_dssp             SCCCEEECT----TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTT
T ss_pred             CceEEEEcC----CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCC
Confidence            456789999    999876665 6889999998853100000000001 11222 2234577899999995455666799


Q ss_pred             cEEEEeC-C----------CcEEEEecCCCCC---CCceEEEEeeCCCEEEEe---cCCeE-----------EEEecCCc
Q psy1242         474 PVLVHTT-F----------GDLLRSLDPPSGF---ASPESVVMSREGVIVVNY---ERGHI-----------AAFTMNGN  525 (540)
Q Consensus       474 ~v~iw~~-~----------g~~~~~l~~~~~~---~~v~~l~fspdg~~l~s~---~dg~I-----------~lw~~~g~  525 (540)
                      .|.+|+. +          .+.+.++..|-..   .....+.++|||++|+++   +..++           .++|+.|.
T Consensus       353 qV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          353 QVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             EEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             cEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence            9988965 3          4567777665320   001233557999999985   32333           78999865


Q ss_pred             EEE
Q psy1242         526 RLR  528 (540)
Q Consensus       526 ~l~  528 (540)
                      .+.
T Consensus       433 ~m~  435 (595)
T 1fwx_A          433 KMV  435 (595)
T ss_dssp             SCE
T ss_pred             cEE
Confidence            433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.14  E-value=0.0067  Score=67.71  Aligned_cols=153  Identities=9%  Similarity=-0.035  Sum_probs=85.9

Q ss_pred             EEEEEEe-cCCCEEEEEEecCC----cEEEEEccCC-eEEE-EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         339 HNCFVTT-VDSRFLLACGFWDN----SFRVFSTDNA-RIVQ-IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       339 ~~~~~~s-pdg~~llasgs~Dg----sv~iwd~~~g-~~~~-~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      ...++|| |||++|+.+.+.+|    +|+++|+.+| +.+. .+               .   .....++|+|    ||+
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---------------~---~~~~~~~Wsp----Dg~  233 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---------------S---GTNGEIVWGP----DHT  233 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---------------E---EECSCCEECS----STT
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---------------c---CceeeEEEec----CCC
Confidence            5567889 99997655544444    4999999988 6321 11               1   1235689999    998


Q ss_pred             EEEEEeCCC-----cEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCCEEEEEeCC-Cc--EEEEeC-C
Q psy1242         412 FIASGSADC-----TVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELGLVVSGSQL-GP--VLVHTT-F  481 (540)
Q Consensus       412 ~l~sgs~Dg-----tV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~~lasgs~D-g~--v~iw~~-~  481 (540)
                      .|+..+.|.     .|.++++.+...         +....+. ........+.|||||++|+..+.+ +.  |.+++. +
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~---------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQS---------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGG---------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCch---------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            887776652     466666654221         1122222 223456788999999987765533 23  444454 3


Q ss_pred             C--cE-EEEecCCCCCCCceEEEEeeCCCEEEEecC-----CeEEEEecC
Q psy1242         482 G--DL-LRSLDPPSGFASPESVVMSREGVIVVNYER-----GHIAAFTMN  523 (540)
Q Consensus       482 g--~~-~~~l~~~~~~~~v~~l~fspdg~~l~s~~d-----g~I~lw~~~  523 (540)
                      +  +. ++.+...... ...++.|+..+.+++.+..     ..|..++++
T Consensus       305 ~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~  353 (751)
T 2xe4_A          305 GNAHNTLEIVRPREKG-VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG  353 (751)
T ss_dssp             CTTCCCEEESSCCCTT-CCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred             CCCCceeEEeecCCCC-ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence            2  23 1444332221 3455555443444444322     357777776

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=0.015  Score=60.39  Aligned_cols=153  Identities=8%  Similarity=-0.025  Sum_probs=91.9

Q ss_pred             EEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...++++| ++..|+++-.. +.|+.+|..+++.....                ........|++++    +|++|+.+.
T Consensus       139 P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~----------------~~~~~P~~ia~d~----~G~~lyvad  197 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVY----------------SGLSKVRTICWTH----EADSMIITN  197 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEE----------------CCCSCEEEEEECT----TSSEEEEEE
T ss_pred             CCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEe----------------cCCCCcceEEEeC----CCCEEEEEe
Confidence            35667787 34545555443 88999999866644333                2345678999999    898665555


Q ss_pred             C-CC----cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCcEE-EEecC
Q psy1242         418 A-DC----TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTTFGDLL-RSLDP  490 (540)
Q Consensus       418 ~-Dg----tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~~g~~~-~~l~~  490 (540)
                      . ++    .+.+.+... .         ......+.. .....+++++| ++.++++-..++.|..++..+..+ .....
T Consensus       198 ~~~~~~~~~v~~~~~~g-~---------~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~  266 (430)
T 3tc9_A          198 DQNNNDRPNNYILTRES-G---------FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI  266 (430)
T ss_dssp             CCSCTTSEEEEEEEGGG-T---------SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCCcccceEEEEeCCC-c---------eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc
Confidence            4 22    233333221 1         011122221 22345788999 677777766778887777654443 22222


Q ss_pred             CCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242         491 PSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG  524 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g  524 (540)
                      ... ..+..++|+|+|++|...  ..++|..++.++
T Consensus       267 ~~~-~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          267 QDS-GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSS-SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCC-CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            221 146899999999955543  468899988775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.13  E-value=0.063  Score=54.97  Aligned_cols=162  Identities=11%  Similarity=-0.011  Sum_probs=101.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCe----EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR----IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~----~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      ...++|.+.+..|+.+-...+.|+.+++....    ....+               .........|++.+.   .+++.+
T Consensus       114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~---------------~~~~~~p~glavD~~---~~~lY~  175 (400)
T 3p5b_L          114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---------------SRDIQAPDGLAVDWI---HSNIYW  175 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE---------------CSSCSCEEEEEEETT---TTEEEE
T ss_pred             ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE---------------eCCCCCcccEEEEec---CCceEE
Confidence            56778888777677776677888888876421    22222               223456778888872   345555


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCC
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPS  492 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~  492 (540)
                      +-...+.|.+.+++...           ....+...-.....|++.|.+..|.....  .+.|...+.+|.....+....
T Consensus       176 ~d~~~~~I~~~~~~g~~-----------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~  244 (400)
T 3p5b_L          176 TDSVLGTVSVADTKGVK-----------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  244 (400)
T ss_dssp             EETTTTEEEEECTTTCS-----------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS
T ss_pred             EECCCCeEEEEeCCCCc-----------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC
Confidence            65667888888876421           12222333445789999997665554442  356766677776555443222


Q ss_pred             CCCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242         493 GFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~  530 (540)
                      - ..+..|++++++..|..+  ..+.|..++++|.....+
T Consensus       245 l-~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (400)
T 3p5b_L          245 I-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  283 (400)
T ss_dssp             C-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred             C-CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence            1 157899999887777664  357899999987654433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.10  E-value=0.055  Score=51.80  Aligned_cols=167  Identities=10%  Similarity=0.044  Sum_probs=107.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...++++|++..|+++...++.|...|.+ |+.+..+.             +.+ ....-.|++.+    ++.++++.-.
T Consensus        29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-------------l~g-~~D~EGIa~~~----~g~~~vs~E~   89 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-------------LDF-VKDLETIEYIG----DNQFVISDER   89 (255)
T ss_dssp             EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-------------CSS-CSSEEEEEECS----TTEEEEEETT
T ss_pred             cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-------------cCC-CCChHHeEEeC----CCEEEEEECC
Confidence            56678899888788888888999999998 88887762             122 24566778877    8877777667


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe------ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE--e--CCCcEEEEe
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL------TGHEQPVTSVAISAELGLVVSGSQLGPVLVH--T--TFGDLLRSL  488 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l------~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw--~--~~g~~~~~l  488 (540)
                      ++.+.++++......        ..+...      .........++++|.++.|.++...+...||  +  ..+..+..+
T Consensus        90 ~~~l~~~~v~~~~~i--------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~  161 (255)
T 3qqz_A           90 DYAIYVISLTPNSEV--------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHIS  161 (255)
T ss_dssp             TTEEEEEEECTTCCE--------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEE
T ss_pred             CCcEEEEEcCCCCee--------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeee
Confidence            788988887653210        011111      1234457899999999777666665555554  3  122122222


Q ss_pred             cC-----CCCCCCceEEEEeeCCC-EEEEe-cCCeEEEEecCCcEEEeeec
Q psy1242         489 DP-----PSGFASPESVVMSREGV-IVVNY-ERGHIAAFTMNGNRLRHESH  532 (540)
Q Consensus       489 ~~-----~~~~~~v~~l~fspdg~-~l~s~-~dg~I~lw~~~g~~l~~~~~  532 (540)
                      ..     ...-..+.++++.|... +++.+ ....|..+|.+|+.+..+..
T Consensus       162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L  212 (255)
T 3qqz_A          162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSL  212 (255)
T ss_dssp             ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEEC
T ss_pred             cchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEc
Confidence            11     01111468999998754 44444 45789999999998877763

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.10  E-value=0.0077  Score=66.38  Aligned_cols=150  Identities=13%  Similarity=0.154  Sum_probs=92.4

Q ss_pred             ecCCC--EEEEEEecCCcEEEEEccCCeEEEEEecccce-e-----eeeeEE------------EeeccCcc--eEEEEe
Q psy1242         345 TVDSR--FLLACGFWDNSFRVFSTDNARIVQIIFGHYGV-V-----TSRIVQ------------IIFGHYGV--VTCLSR  402 (540)
Q Consensus       345 spdg~--~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~-v-----~~~~~~------------~l~~h~~~--Vt~l~~  402 (540)
                      ..+|+  .+++.++.+|.|.++|..+|+.+..++..... .     .++.+.            .+.+..+.  =..+++
T Consensus       321 ~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~  400 (677)
T 1kb0_A          321 KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF  400 (677)
T ss_dssp             EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred             ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence            34773  46789999999999999999998776422100 0     000000            00000000  025678


Q ss_pred             ccCccCCCcEEEEEeCC-------------------------------------------CcEEEEEcCCCcccccCCCC
Q psy1242         403 SECNITADCFIASGSAD-------------------------------------------CTVLLWHWNARTQSIVGETD  439 (540)
Q Consensus       403 sp~~~~dg~~l~sgs~D-------------------------------------------gtV~lWd~~~~~~~~~~~~~  439 (540)
                      +|    ++.++++...+                                           +.|..||+.++         
T Consensus       401 dp----~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG---------  467 (677)
T 1kb0_A          401 NP----QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ---------  467 (677)
T ss_dssp             ET----TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT---------
T ss_pred             cC----CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC---------
Confidence            88    77777665432                                           67888887663         


Q ss_pred             CCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         440 TPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       440 ~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                        +.+-.+. +...+.+..+..++.+++.++.||.+++++. +|+.+.++..+.+. ...-+.+..+|+..+.
T Consensus       468 --~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          468 --KAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV-VAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             --EEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEE
T ss_pred             --cEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCc-ccCCEEEEeCCEEEEE
Confidence              2222222 2233444556677888999999999999875 89999998866542 2345677789975443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.06  E-value=0.0031  Score=64.13  Aligned_cols=108  Identities=9%  Similarity=-0.168  Sum_probs=75.4

Q ss_pred             CEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-------
Q psy1242         349 RFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-------  417 (540)
Q Consensus       349 ~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-------  417 (540)
                      .+++++...++    +|.+.|..+++.+.++               .....+  .++++|    ||++++.+.       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i---------------~vG~~P--~i~~sp----Dg~~lyVan~~~~r~~   90 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHS---------------LGAFLS--LAVAGH----SGSDFALASTSFARSA   90 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEE---------------EECTTC--EEEECT----TSSCEEEEEEEETTTT
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEE---------------eCCCCC--ceEECC----CCCEEEEEcccccccc
Confidence            34556665555    7889999999999888               333334  799999    999888876       


Q ss_pred             ---CCCcEEEEEcCCCcccccCCCCCCcceEEeccC-------CCCEEEEEEcCCCCEEEEEeC--CCcEEE--EeCCCc
Q psy1242         418 ---ADCTVLLWHWNARTQSIVGETDTPTPRATLTGH-------EQPVTSVAISAELGLVVSGSQ--LGPVLV--HTTFGD  483 (540)
Q Consensus       418 ---~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~~spdg~~lasgs~--Dg~v~i--w~~~g~  483 (540)
                         .+++|.+||..+           .+.+..+.-.       ......++++|||++++.+..  +..+.+  ++... 
T Consensus        91 ~G~~~~~VsviD~~T-----------~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-  158 (368)
T 1mda_H           91 KGKRTDYVEVFDPVT-----------FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-  158 (368)
T ss_dssp             SSSEEEEEEEECTTT-----------CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-
T ss_pred             cCCCCCEEEEEECCC-----------CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-
Confidence               478999999877           3455665422       122446899999999888875  356777  55422 


Q ss_pred             EEEEecC
Q psy1242         484 LLRSLDP  490 (540)
Q Consensus       484 ~~~~l~~  490 (540)
                       +.++..
T Consensus       159 -v~~i~v  164 (368)
T 1mda_H          159 -DQLTKS  164 (368)
T ss_dssp             -EEEEEC
T ss_pred             -ceEEEC
Confidence             555543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.04  E-value=0.05  Score=51.57  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=96.9

Q ss_pred             EEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .-+.|+. + .|+.+.+.+|  +|+++|+.+|+.+..+..             ..+. .--.++..     +++..+..-
T Consensus        24 qGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l-------------~~~~-fgeGi~~~-----~~~ly~ltw   82 (243)
T 3mbr_X           24 EGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEV-------------PPPY-FGAGIVAW-----RDRLIQLTW   82 (243)
T ss_dssp             EEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEEC-------------CTTC-CEEEEEEE-----TTEEEEEES
T ss_pred             ccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeC-------------CCCc-ceeEEEEe-----CCEEEEEEe
Confidence            3445554 4 4677776654  899999999999887721             1111 11223332     234444455


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC-
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA-  495 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~-  495 (540)
                      .++.+.++|..+           .+.+.++......   ..++++++.|+.+..++.|.+.+. +.+.++++....... 
T Consensus        83 ~~~~v~v~D~~t-----------l~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~  148 (243)
T 3mbr_X           83 RNHEGFVYDLAT-----------LTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP  148 (243)
T ss_dssp             SSSEEEEEETTT-----------TEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             eCCEEEEEECCc-----------CcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence            789999999876           3455665432222   233456776666666888887765 788888776533211 


Q ss_pred             --CceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         496 --SPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       496 --~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                        .++.+.+. +|++.+. ..+..|.+.|+. |+.+..+.
T Consensus       149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~id  187 (243)
T 3mbr_X          149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWID  187 (243)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred             cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence              23456654 6765554 357899999987 88888775

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.03  E-value=0.062  Score=53.19  Aligned_cols=160  Identities=7%  Similarity=-0.004  Sum_probs=101.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEE-EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ-IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~-~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ...++|.+....|+.+-...+.|..++.+.+.... .+               .........+++.+.   ++...++-.
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~---------------~~~l~~p~glavd~~---~g~ly~~d~   98 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---------------VSGLLSPDGLACDWL---GEKLYWTDS   98 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---------------EECCSCCCEEEEETT---TTEEEEEET
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---------------cCCCCCccEEEEEcC---CCeEEEEEC
Confidence            46778888766677777778889999887653211 12               222345667888862   455556666


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGFA  495 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~~  495 (540)
                      ..+.|.+.+++...           ....+.........+++.|.+..|..+..  .+.|...+.+|.....+....- .
T Consensus        99 ~~~~I~~~~~dG~~-----------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l-~  166 (318)
T 3sov_A           99 ETNRIEVSNLDGSL-----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-Y  166 (318)
T ss_dssp             TTTEEEEEETTSCS-----------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-S
T ss_pred             CCCEEEEEECCCCc-----------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC-C
Confidence            77899999876421           11122234456789999987665555543  4566666667765544432211 1


Q ss_pred             CceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEE
Q psy1242         496 SPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLR  528 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~  528 (540)
                      .+..|++++++..|..+  ..+.|..++++|....
T Consensus       167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~  201 (318)
T 3sov_A          167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ  201 (318)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE
Confidence            57899999977766654  4678999999875433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.02  E-value=0.023  Score=56.26  Aligned_cols=161  Identities=7%  Similarity=0.077  Sum_probs=101.1

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-CcceEEEEe---ccCccCCCcEEEEE
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-YGVVTCLSR---SECNITADCFIASG  416 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-~~~Vt~l~~---sp~~~~dg~~l~sg  416 (540)
                      |.+|.+....++++.-..++|..|+...+.........   +.+      .+- ...+..|.|   .|    +++++++.
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~---~s~------~g~~~~~~sGl~~~~~D~----~grL~vv~   83 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDG---ASS------NGDGEQQMSGLSLLTHDN----SKRLFAVM   83 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTT---TCC------SSCCSEEEEEEEESSSSS----CCEEEEEE
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCC---ccc------cCCCcceeeEEEEeccCC----CCcEEEEE
Confidence            45677765656666668999999999755443322000   000      010 113578999   68    77777754


Q ss_pred             e-------------CCCcEEEEEcC---CCcccccCCCCCCcceEEecc-----------CCCCEEEEEEcCCCCEEEEE
Q psy1242         417 S-------------ADCTVLLWHWN---ARTQSIVGETDTPTPRATLTG-----------HEQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       417 s-------------~DgtV~lWd~~---~~~~~~~~~~~~~~~~~~l~~-----------h~~~V~~v~~spdg~~lasg  469 (540)
                      .             .+..|..+|+.   ++..         .....|.+           -......+++.++|...+++
T Consensus        84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~---------~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~  154 (334)
T 2p9w_A           84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKP---------VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF  154 (334)
T ss_dssp             EETTTTCTTSCCSSSCCEEEEEESSCCTTCCC---------SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred             cccccccccccccCCCCEEEEEcCCcCCCCCE---------EEEecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence            3             26778889987   3221         11112211           11247899999999999999


Q ss_pred             eCC-CcEEEEeCCCcEEEEec--CCC--CCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         470 SQL-GPVLVHTTFGDLLRSLD--PPS--GFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       470 s~D-g~v~iw~~~g~~~~~l~--~~~--~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      +.. +.|...+.+|+.+..+.  ...  .....+.|+++|+|+.|+.. ..|.|..+|++
T Consensus       155 s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          155 ALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            988 88766677776444332  111  11135799999999987773 47889999976

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.98  E-value=0.13  Score=48.77  Aligned_cols=140  Identities=7%  Similarity=-0.008  Sum_probs=87.1

Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      ++..|.+..-.++.+.++|.++.+.+.++..             .+ .+  ..+  ++    ++..|+.+..++.|.++|
T Consensus        73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-------------~~-~G--wgl--t~----dg~~L~vSdgs~~l~~iD  130 (243)
T 3mbr_X           73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRY-------------PG-EG--WAL--TS----DDSHLYMSDGTAVIRKLD  130 (243)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTTEEEEEEEC-------------SS-CC--CEE--EE----CSSCEEEECSSSEEEEEC
T ss_pred             eCCEEEEEEeeCCEEEEEECCcCcEEEEEeC-------------CC-Cc--eEE--ee----CCCEEEEECCCCeEEEEe
Confidence            4566777777899999999999999998831             12 11  233  34    666666666788999998


Q ss_pred             cCCCcccccCCCCCCcceEEecc--CC---CCEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCcEEEEecCCC--------
Q psy1242         427 WNARTQSIVGETDTPTPRATLTG--HE---QPVTSVAISAELGLVVSGSQLGPVL-VHTTFGDLLRSLDPPS--------  492 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~--h~---~~V~~v~~spdg~~lasgs~Dg~v~-iw~~~g~~~~~l~~~~--------  492 (540)
                      ..+.           +.+..+.-  +.   ..++.+.+. +|++.+..-.+..|. |...+|+.+..+....        
T Consensus       131 p~t~-----------~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~  198 (243)
T 3mbr_X          131 PDTL-----------QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADAL  198 (243)
T ss_dssp             TTTC-----------CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSC
T ss_pred             CCCC-----------eEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccc
Confidence            7652           23333321  21   234556655 666655554455664 4566999988776321        


Q ss_pred             ---CCCCceEEEEeeCCCEEEEecCCeEEEE
Q psy1242         493 ---GFASPESVVMSREGVIVVNYERGHIAAF  520 (540)
Q Consensus       493 ---~~~~v~~l~fspdg~~l~s~~dg~I~lw  520 (540)
                         .....+.||++|+++.|...+..-=++|
T Consensus       199 ~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~  229 (243)
T 3mbr_X          199 TDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY  229 (243)
T ss_dssp             CCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             cCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence               1114688999998776665434333333

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.96  E-value=0.013  Score=64.61  Aligned_cols=79  Identities=20%  Similarity=0.205  Sum_probs=52.9

Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCce
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~  498 (540)
                      |+|..||+.++           +.+-.+..+. .+..-.+...+.+++.|+.||.++.|+. +|+.+.+++.+.+. ...
T Consensus       455 g~l~A~D~~tG-----------~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~-~~~  521 (689)
T 1yiq_A          455 GKLIAWDPVKQ-----------QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV-MAA  521 (689)
T ss_dssp             EEEEEEETTTT-----------EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSC
T ss_pred             eeEEEEECCCC-----------CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCc-ccC
Confidence            67888887663           3333333232 2233355667889999999999999975 89999988876542 224


Q ss_pred             EEEEeeCCCEEEE
Q psy1242         499 SVVMSREGVIVVN  511 (540)
Q Consensus       499 ~l~fspdg~~l~s  511 (540)
                      -+.++.+|+..++
T Consensus       522 p~ty~~~G~qyv~  534 (689)
T 1yiq_A          522 PVTYSVDGEQYVT  534 (689)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             ceEEEECCEEEEE
Confidence            4778889985443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.94  E-value=0.18  Score=52.09  Aligned_cols=159  Identities=8%  Similarity=0.079  Sum_probs=94.9

Q ss_pred             EEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEe
Q psy1242         340 NCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGS  417 (540)
Q Consensus       340 ~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs  417 (540)
                      ..+++.| +|. |+++-..++.|+.++..++.....+..             .+....-..|+++|    +|++| ++-.
T Consensus       231 ~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~-------------~~~~~~~~~ia~dp----dG~~LYvad~  292 (433)
T 4hw6_A          231 KTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVM-------------MDTKGSNFHIVWHP----TGDWAYIIYN  292 (433)
T ss_dssp             CCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEE-------------CSCCSSCEEEEECT----TSSEEEEEET
T ss_pred             CEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEec-------------cCCCCCcccEEEeC----CCCEEEEEeC
Confidence            4467788 565 666666778899999887776333310             11122334799999    88854 5555


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEecc---------------CCCCEEEEEE---------cCCCCEEEEEeCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTG---------------HEQPVTSVAI---------SAELGLVVSGSQLG  473 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~---------------h~~~V~~v~~---------spdg~~lasgs~Dg  473 (540)
                      ..+.|..++.+......       .....+.+               .-.....+++         .++|.++++-...+
T Consensus       293 ~~~~I~~~~~d~~~~~~-------~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKL-------AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             TTTEEEEEEBCTTTCCB-------CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             CCCEEEEEeCCCCCccc-------CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence            67889998876322110       00011111               1124567898         67777777777777


Q ss_pred             cEEEEeCCCcEEEEecCCC-------C--------CCCceEEEEe-eCCCEEEE-ecCCeEEEEecC
Q psy1242         474 PVLVHTTFGDLLRSLDPPS-------G--------FASPESVVMS-REGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       474 ~v~iw~~~g~~~~~l~~~~-------~--------~~~v~~l~fs-pdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .|+..+.+|......-...       .        ...+..|++. ++|.+.++ ...++|+.++++
T Consensus       366 ~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          366 TVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            8888887885443332111       0        1136789998 56665555 345777777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.85  E-value=0.39  Score=46.63  Aligned_cols=164  Identities=9%  Similarity=0.032  Sum_probs=87.8

Q ss_pred             EEEEEEecCCCEEEEEEecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ...+++.++|+ ++++....+  .|..++..+++......              .........++..+    ++..+++.
T Consensus        74 p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~--------------~~~~~~~~g~~~~~----~~~~~v~d  134 (306)
T 2p4o_A           74 VSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLT--------------LPDAIFLNGITPLS----DTQYLTAD  134 (306)
T ss_dssp             EEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEE--------------CTTCSCEEEEEESS----SSEEEEEE
T ss_pred             ceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEe--------------CCCccccCcccccC----CCcEEEEE
Confidence            56778899999 455554332  36667777777543321              01112234444444    55555555


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcce-EEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CcE--EEEecC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPR-ATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTTF--GDL--LRSLDP  490 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~~--g~~--~~~l~~  490 (540)
                      ..++.|.++|...........  ..... ....+.-.....+  +++++.| ++-+..+.|..++.+  ++.  ...+..
T Consensus       135 ~~~g~i~~~d~~~~~~~v~~~--~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~  210 (306)
T 2p4o_A          135 SYRGAIWLIDVVQPSGSIWLE--HPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE  210 (306)
T ss_dssp             TTTTEEEEEETTTTEEEEEEE--CGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE
T ss_pred             CCCCeEEEEeCCCCcEeEEEE--CCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec
Confidence            567888877764321110000  00000 0000111234555  7888755 445556778776543  321  111111


Q ss_pred             CCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEE
Q psy1242         491 PSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLR  528 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~  528 (540)
                      . .  .+..+++.++|++.++ ...+.|.+++.+|+...
T Consensus       211 ~-~--~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~  246 (306)
T 2p4o_A          211 Q-T--NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTI  246 (306)
T ss_dssp             S-C--CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEE
T ss_pred             c-C--CCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEE
Confidence            1 1  4578999999987666 44689999999988744

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.71  E-value=0.29  Score=48.01  Aligned_cols=159  Identities=11%  Similarity=-0.004  Sum_probs=96.6

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      ..+++.+.+..|+++-...+.|.+.+.+... ...+.              .........++++|    .+..|..+...
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~--------------~~~~~~P~~iavdp----~~g~ly~~d~~  140 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF--------------RENGSKPRAIVVDP----VHGFMYWTDWG  140 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE--------------ECTTCCEEEEEEET----TTTEEEEEECS
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE--------------ECCCCCcceEEeCC----CCCEEEEEccC
Confidence            3456677666677777778899999987433 33330              22345678999998    55555544443


Q ss_pred             --CcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcEEEEecC-CCCC
Q psy1242         420 --CTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTTFGDLLRSLDP-PSGF  494 (540)
Q Consensus       420 --gtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~~g~~~~~l~~-~~~~  494 (540)
                        +.|...+++..            ....+ ...-.....+++++++..|..+. ..+.|...+.+|...+.+.. ....
T Consensus       141 ~~~~I~~~~~dG~------------~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~  208 (316)
T 1ijq_A          141 TPAKIKKGGLNGV------------DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL  208 (316)
T ss_dssp             SSCEEEEEETTSC------------CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT
T ss_pred             CCCeEEEEcCCCC------------CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCcc
Confidence              67777776531            22222 22335678999998776665544 55677777776654444422 1111


Q ss_pred             CCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEEee
Q psy1242         495 ASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLRHE  530 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~~~  530 (540)
                      ..+..+++. .+.+.++ ...+.|..++. +|+.+..+
T Consensus       209 ~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          209 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            146788885 4444444 45688999986 47655544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.70  E-value=0.19  Score=47.98  Aligned_cols=164  Identities=15%  Similarity=0.058  Sum_probs=97.9

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC  420 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg  420 (540)
                      .+++.+++.+ +++.-.++.+.++++.....+..+....-.+     . ........-.|+++|    .++.|.++...+
T Consensus        74 GIa~~~~g~~-~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-----~-~~~~N~g~EGLA~d~----~~~~L~va~E~~  142 (255)
T 3qqz_A           74 TIEYIGDNQF-VISDERDYAIYVISLTPNSEVKILKKIKIPL-----Q-ESPTNCGFEGLAYSR----QDHTFWFFKEKN  142 (255)
T ss_dssp             EEEECSTTEE-EEEETTTTEEEEEEECTTCCEEEEEEEECCC-----S-SCCCSSCCEEEEEET----TTTEEEEEEESS
T ss_pred             HeEEeCCCEE-EEEECCCCcEEEEEcCCCCeeeeeeeecccc-----c-cccccCCcceEEEeC----CCCEEEEEECcC
Confidence            4555678874 4555467889898876544322221000000     0 012344578999999    777777777666


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEec-------cCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCcEEEEecCCC
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLT-------GHEQPVTSVAISAELGLVVSGSQL-GPVLVHTTFGDLLRSLDPPS  492 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~v~~spdg~~lasgs~D-g~v~iw~~~g~~~~~l~~~~  492 (540)
                      ...||.++....        ...+..+.       .+...+.+++++|....+...|.. ..+.+.+.+|+.+..+....
T Consensus       143 p~~i~~~~g~~~--------~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~  214 (255)
T 3qqz_A          143 PIEVYKVNGLLS--------SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTK  214 (255)
T ss_dssp             SEEEEEEESTTC--------SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECST
T ss_pred             CceEEEEccccc--------CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCC
Confidence            666776652110        01112221       123356889999976665555554 45556788999877665543


Q ss_pred             CC-------CCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         493 GF-------ASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       493 ~~-------~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      +.       .....|+|.++|.+.++++.+.++.|...
T Consensus       215 g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          215 GSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             TGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC-
T ss_pred             ccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEec
Confidence            21       15689999999998888877878877654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.64  E-value=0.14  Score=51.15  Aligned_cols=157  Identities=8%  Similarity=-0.031  Sum_probs=95.8

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEeC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGSA  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~  418 (540)
                      ..+++.+.+..|+++-...+.|.+.+++.......+               .........|+++|    .+..| ++-..
T Consensus       119 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~---------------~~~l~~P~~iavdp----~~g~ly~td~~  179 (349)
T 3v64_C          119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL---------------WQSLEKPRAIALHP----MEGTIYWTDWG  179 (349)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CTTCSCEEEEEEET----TTTEEEEEECS
T ss_pred             cEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE---------------eCCCCCcceEEEec----CcCeEEEeccC
Confidence            456777766667777777888999998743322222               23345678999998    55444 44444


Q ss_pred             C-CcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcEEEEec-CCCCC
Q psy1242         419 D-CTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTTFGDLLRSLD-PPSGF  494 (540)
Q Consensus       419 D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~~g~~~~~l~-~~~~~  494 (540)
                      . +.|...+++..            ....+ ...-.....+++++++..|..+ +..+.|...+.+|...+.+. .... 
T Consensus       180 ~~~~I~r~~~dG~------------~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~-  246 (349)
T 3v64_C          180 NTPRIEASSMDGS------------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-  246 (349)
T ss_dssp             SSCEEEEEETTSC------------SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-
T ss_pred             CCCEEEEEeCCCC------------CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCC-
Confidence            4 67777776542            12222 2223457899999876655544 45667777777665444332 2222 


Q ss_pred             CCceEEEEeeCCCEEEE-ecCCeEEEEe-cCCcEEEee
Q psy1242         495 ASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHE  530 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~-~~g~~l~~~  530 (540)
                       .+..+++ .++.+.++ ...+.|..++ .+|+.+..+
T Consensus       247 -~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          247 -HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             -SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             -CceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence             5678888 34544444 4568888888 567655444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.62  E-value=0.2  Score=49.38  Aligned_cols=157  Identities=10%  Similarity=0.055  Sum_probs=95.6

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-  418 (540)
                      ..+++.+.+..|+++-...+.|.+.+++.. ....+.              .........|+++|    .+..|..+.. 
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~--------------~~~~~~P~giavdp----~~g~ly~td~~  142 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLF--------------WQELDQPRAIALDP----SSGFMYWTDWG  142 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEE--------------CSSCSSEEEEEEEG----GGTEEEEEECS
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEE--------------eCCCCCccEEEEeC----CCCEEEEEecC
Confidence            346667766667777777788999998743 322330              23445678999998    5445554442 


Q ss_pred             -CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcEEEEecC-CCCC
Q psy1242         419 -DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTTFGDLLRSLDP-PSGF  494 (540)
Q Consensus       419 -DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~~g~~~~~l~~-~~~~  494 (540)
                       .+.|...+++..            ....+ ...-..-..++++++++.|..+ +..+.|...+.+|...+.+.. ... 
T Consensus       143 ~~~~I~r~~~dG~------------~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-  209 (318)
T 3sov_A          143 EVPKIERAGMDGS------------SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP-  209 (318)
T ss_dssp             SSCEEEEEETTSC------------SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS-
T ss_pred             CCCEEEEEEcCCC------------CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC-
Confidence             467777776531            12222 2233456899999976655554 456677777776655444432 222 


Q ss_pred             CCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEEee
Q psy1242         495 ASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLRHE  530 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~~~  530 (540)
                       .+..+++..+ .+.++ ...+.|..++. +|+.+..+
T Consensus       210 -~P~glav~~~-~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          210 -HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             -CEEEEEEETT-EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             -CceEEEEeCC-EEEEEecCCCeEEEEECCCCCceEEE
Confidence             5678888643 33334 45688999998 47655444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.62  E-value=0.18  Score=56.42  Aligned_cols=160  Identities=13%  Similarity=0.008  Sum_probs=101.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCe----EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC-cEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR----IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD-CFI  413 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~----~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg-~~l  413 (540)
                      ...+++.+....|+++-...+.|+.+++....    ....+               .........|++.+    .+ ++.
T Consensus       426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi---------------~~~l~~P~GLAvD~----~~~~LY  486 (791)
T 3m0c_C          426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---------------SRDIQAPDGLAVDW----IHSNIY  486 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE---------------CSSCSCCCEEEEET----TTTEEE
T ss_pred             eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE---------------ecCCCCcceeeeee----cCCcEE
Confidence            45677787666677777667788888876421    12222               33445677889987    45 555


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCcEEEEecC
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQ-L-GPVLVHTTFGDLLRSLDP  490 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~-D-g~v~iw~~~g~~~~~l~~  490 (540)
                      ++-...++|.+.+++..            ...++ .........|++.|....|..... . +.|...+.+|.....+..
T Consensus       487 ~tD~~~~~I~v~~ldG~------------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          487 WTDSVLGTVSVADTKGV------------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEETTTTEEEEEETTSS------------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEecCCCeEEEEeCCCC------------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            66667889999987642            22222 334456889999998665555543 2 566666777776665543


Q ss_pred             CCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242         491 PSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~  530 (540)
                      ..- ..+..|++.+.+..|+.+  ..+.|..++++|..+..+
T Consensus       555 ~~l-~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v  595 (791)
T 3m0c_C          555 ENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  595 (791)
T ss_dssp             SSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCC-CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence            221 157899999877766654  457899999987654443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.60  E-value=0.091  Score=52.62  Aligned_cols=154  Identities=12%  Similarity=0.078  Sum_probs=86.5

Q ss_pred             EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE-EEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT-CLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt-~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      +..++.++.|..+|..+|+.+...........      .......+. .+..      ++..++.++.++.|..+|..++
T Consensus        56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~------~~~~~~~~~~~~~~------~~~~v~v~~~~g~l~a~d~~tG  123 (376)
T 3q7m_A           56 VYAADRAGLVKALNADDGKEIWSVSLAEKDGW------FSKEPALLSGGVTV------SGGHVYIGSEKAQVYALNTSDG  123 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCC---C------CSCCCCCEEEEEEE------ETTEEEEEETTSEEEEEETTTC
T ss_pred             EEEEcCCCeEEEEEccCCceeeeecCcccccc------ccccCcccccCceE------eCCEEEEEcCCCEEEEEECCCC
Confidence            45666789999999999998866622110000      000012222 2222      3457788889999999998763


Q ss_pred             cccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCC---CceEEEEeeCC
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFA---SPESVVMSREG  506 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~---~v~~l~fspdg  506 (540)
                      +           .+-...............  +..++.++.++.+..++. +|+.+..........   ........ ++
T Consensus       124 ~-----------~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~  189 (376)
T 3q7m_A          124 T-----------VAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG  189 (376)
T ss_dssp             C-----------EEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT
T ss_pred             C-----------EEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC
Confidence            3           222222111111111222  447778888998887765 899887776543210   00122222 45


Q ss_pred             CEEEEecCCeEEEEecC-CcEEEeee
Q psy1242         507 VIVVNYERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       507 ~~l~s~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      .+++...++.|..+|+. |+.+-...
T Consensus       190 ~v~~g~~~g~l~~~d~~tG~~~w~~~  215 (376)
T 3q7m_A          190 AAVVGGDNGRVSAVLMEQGQMIWQQR  215 (376)
T ss_dssp             EEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            54444567899999985 77765554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.53  E-value=0.14  Score=52.09  Aligned_cols=157  Identities=8%  Similarity=-0.032  Sum_probs=95.4

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-C
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-A  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~  418 (540)
                      ..+++.+.+..|+++-...+.|.+.+++.......+               .........|+++|    .+..|..+. .
T Consensus       162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~---------------~~~l~~P~giavdp----~~g~ly~td~~  222 (386)
T 3v65_B          162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL---------------WQSLEKPRAIALHP----MEGTIYWTDWG  222 (386)
T ss_dssp             CCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE---------------CSSCSCEEEEEEET----TTTEEEEEECS
T ss_pred             cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee---------------cCCCCCCcEEEEEc----CCCeEEEeccC
Confidence            345667766667777777788888887643322222               33345678999998    555554444 4


Q ss_pred             C-CcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcEEEEecC-CCCC
Q psy1242         419 D-CTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTTFGDLLRSLDP-PSGF  494 (540)
Q Consensus       419 D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~~g~~~~~l~~-~~~~  494 (540)
                      . +.|...+++..            ....+ ...-.....|+++|++..|..+ +..+.|...+.+|...+.+.. ... 
T Consensus       223 ~~~~I~r~~~dG~------------~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-  289 (386)
T 3v65_B          223 NTPRIEASSMDGS------------GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP-  289 (386)
T ss_dssp             SSCEEEEEETTSC------------SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCS-
T ss_pred             CCCEEEEEeCCCC------------CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCC-
Confidence            4 67777776542            12222 2334457899999876655444 456677777776654443332 222 


Q ss_pred             CCceEEEEeeCCCEEEE-ecCCeEEEEe-cCCcEEEee
Q psy1242         495 ASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHE  530 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~-~~g~~l~~~  530 (540)
                       .+..|++ ..+.+.++ ...+.|..++ .+|+.+..+
T Consensus       290 -~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          290 -HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             -SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             -CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence             5678888 44444444 4578899888 567655544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.47  E-value=0.082  Score=58.01  Aligned_cols=59  Identities=17%  Similarity=0.231  Sum_probs=41.0

Q ss_pred             CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeeecC
Q psy1242         472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHESHN  533 (540)
Q Consensus       472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~~~  533 (540)
                      +|.|..|+. +|+.+.....+.   ++....+...|.+|+.+ .++.|++||.. |+.+..+...
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cceEEEEeCCCCcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            367777775 898887766443   23344555667777665 58999999987 9988877643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.46  E-value=0.36  Score=46.92  Aligned_cols=152  Identities=12%  Similarity=0.072  Sum_probs=86.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...++++++|+ |+++...++.|..+|... +....+                .-.....++++++    +|+++++...
T Consensus        34 pegia~~~~g~-lyv~d~~~~~I~~~d~~g-~~~~~~----------------~~~~~p~gia~~~----dG~l~vad~~   91 (306)
T 2p4o_A           34 LENLASAPDGT-IFVTNHEVGEIVSITPDG-NQQIHA----------------TVEGKVSGLAFTS----NGDLVATGWN   91 (306)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEECTTC-CEEEEE----------------ECSSEEEEEEECT----TSCEEEEEEC
T ss_pred             cceEEECCCCC-EEEEeCCCCeEEEECCCC-ceEEEE----------------eCCCCceeEEEcC----CCcEEEEecc
Confidence            45678899998 677776789999998874 433333                1234688999999    8887666544


Q ss_pred             CCc--EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcE-EEEec-----
Q psy1242         419 DCT--VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GDL-LRSLD-----  489 (540)
Q Consensus       419 Dgt--V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~~-~~~l~-----  489 (540)
                      ...  |..++...+..         +.+..+ ........++..+++..+++.+.++.|.+.+.. ++. +....     
T Consensus        92 ~~~~~v~~~d~~~g~~---------~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A           92 ADSIPVVSLVKSDGTV---------ETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             TTSCEEEEEECTTSCE---------EEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             CCcceEEEEcCCCCeE---------EEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence            333  54555433211         111111 112234556656655555555567877766653 321 21111     


Q ss_pred             --CCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242         490 --PPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG  524 (540)
Q Consensus       490 --~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g  524 (540)
                        .......+..+  +++|+.|..+  ..++|..|++++
T Consensus       162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~  198 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS  198 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred             ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence              01111134555  8998877664  367899999873

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.32  E-value=0.13  Score=53.20  Aligned_cols=152  Identities=13%  Similarity=0.032  Sum_probs=89.2

Q ss_pred             EEEEEEecC--CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         339 HNCFVTTVD--SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       339 ~~~~~~spd--g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      ...+++.|+  +..|+++-.. +.|+.+|..+++.....                +......+|++++    +|+++++.
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~----------------~~~~~P~giavd~----dG~lyVad  199 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT----------------TNIGQCADVNFTL----NGDMVVVD  199 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC----------------CCCSCEEEEEECT----TCCEEEEE
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee----------------cCCCCccEEEECC----CCCEEEEc
Confidence            356778884  3445555443 89999999877755433                3445688999999    88855554


Q ss_pred             eCC---Cc-EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC-CCcEEEEe-c
Q psy1242         417 SAD---CT-VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISA-ELGLVVSGSQLGPVLVHTT-FGDLLRSL-D  489 (540)
Q Consensus       417 s~D---gt-V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~sp-dg~~lasgs~Dg~v~iw~~-~g~~~~~l-~  489 (540)
                      ...   .. +...+... .         ......+. .......++++| ++.+.++-..++.|+.++. ++.....+ .
T Consensus       200 ~~~~~~~~gv~~~~~~~-~---------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~  268 (433)
T 4hw6_A          200 DQSSDTNTGIYLFTRAS-G---------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM  268 (433)
T ss_dssp             CCSCTTSEEEEEECGGG-T---------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE
T ss_pred             CCCCcccceEEEEECCC-C---------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec
Confidence            321   12 22222111 0         00001121 223345688999 6776666666778877776 47663333 2


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242         490 PPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~  523 (540)
                      .... .....++|+|+|+.|..+  ..++|..++.+
T Consensus       269 ~~~~-~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          269 MDTK-GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CSCC-SSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             cCCC-CCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            2221 123579999999965553  46789998876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.28  E-value=0.37  Score=49.62  Aligned_cols=159  Identities=13%  Similarity=0.128  Sum_probs=92.2

Q ss_pred             EEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE-EEEE
Q psy1242         339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF-IASG  416 (540)
Q Consensus       339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~-l~sg  416 (540)
                      ...++++| +|. |+++-..++.|..++..++.......              .+....-..|+++|    +|++ +++-
T Consensus       228 p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~--------------~~~~~~P~gia~~p----dG~~lyv~d  288 (430)
T 3tc9_A          228 CNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFT--------------IQDSGWEFHIQFHP----SGNYAYIVV  288 (430)
T ss_dssp             CCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEE--------------CSSSSCCEEEEECT----TSSEEEEEE
T ss_pred             ceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEE--------------cCCCCcceeEEEcC----CCCEEEEEE
Confidence            35567899 565 67777678899999998665432220              11223467899999    8985 4555


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccC---------------CCCEE-EEEEc--------CCCCEEEEEeCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGH---------------EQPVT-SVAIS--------AELGLVVSGSQL  472 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h---------------~~~V~-~v~~s--------pdg~~lasgs~D  472 (540)
                      ...+.|..++.+......       .....+.+.               -..-. .+++.        ++|.++++-...
T Consensus       289 ~~~~~I~~~~~d~~~~~~-------~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n  361 (430)
T 3tc9_A          289 VNQHYILRSDYDWKTKRL-------TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN  361 (430)
T ss_dssp             TTTTEEEEEEEETTTTEE-------CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred             CCCCEEEEEeCCcccccc-------cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence            567899998876421110       001111110               11122 45553        346666666666


Q ss_pred             CcEEEEeCCCcEEEEecCC----CC-----------CCCceEEEEeeC-CCEEEE-ecCCeEEEEecC
Q psy1242         473 GPVLVHTTFGDLLRSLDPP----SG-----------FASPESVVMSRE-GVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       473 g~v~iw~~~g~~~~~l~~~----~~-----------~~~v~~l~fspd-g~~l~s-~~dg~I~lw~~~  523 (540)
                      +.|+.++.+|.........    .+           ...+..|++.|+ |.++++ ...+.|+.++++
T Consensus       362 ~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          362 HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            7787777777654433210    00           114789999995 555544 345778877764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.17  E-value=0.49  Score=51.40  Aligned_cols=155  Identities=8%  Similarity=-0.006  Sum_probs=99.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++.+.+..|+.+-..++.|..++++.......+               .........|++.+.   .+++.++-..
T Consensus        39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~---------------~~g~~~P~GlAvD~~---~~~LY~tD~~  100 (628)
T 4a0p_A           39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV---------------EFGLDYPEGMAVDWL---GKNLYWADTG  100 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CSSCSCCCEEEEETT---TTEEEEEETT
T ss_pred             eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE---------------eCCCCCcceEEEEeC---CCEEEEEECC
Confidence            4567888887777778777889999988754433333               222245678888861   3455566566


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGFA  495 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~~  495 (540)
                      .+.|.+.+++...            ...+ ...-.....|++.|....|.....  .+.|...+.+|.....+...-.  
T Consensus       101 ~~~I~v~~~dG~~------------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~--  166 (628)
T 4a0p_A          101 TNRIEVSKLDGQH------------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVG--  166 (628)
T ss_dssp             TTEEEEEETTSTT------------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCS--
T ss_pred             CCEEEEEecCCCc------------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCC--
Confidence            7889988876422            2222 233445789999986555555443  3455555666665444433223  


Q ss_pred             CceEEEEeeCCCEEEEe--cCCeEEEEecCCc
Q psy1242         496 SPESVVMSREGVIVVNY--ERGHIAAFTMNGN  525 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~  525 (540)
                      .+..|+++++++.|..+  ..+.|..++++|.
T Consensus       167 ~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          167 RANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            57899999987766654  4578999998864

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.11  E-value=0.49  Score=52.70  Aligned_cols=160  Identities=11%  Similarity=0.101  Sum_probs=98.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.++...++|.  |-.|..++-|..|+..+++...........      . ..-....|.++...+    +|+.|..|+.
T Consensus       359 V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~------~-~~l~~~~v~~i~~d~----~g~~lWigt~  425 (795)
T 4a2l_A          359 VSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDES------A-RGIGSNNIKAVYVDE----KKSLVYIGTH  425 (795)
T ss_dssp             EEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC-------------CCSCSCEEEEEEET----TTTEEEEEET
T ss_pred             eEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCc------c-cCCCCccEEEEEEcC----CCCEEEEEeC
Confidence            66777778887  356777778999998876543322000000      0 000235789999887    7875666787


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEec-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC-
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLT-----GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP-  491 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~-  491 (540)
                      ++-+.++|..+..            ...+.     .....|.++...++|.+.+... +| +.+++. +++. ..+... 
T Consensus       426 ~~Gl~~~d~~~~~------------~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~-~~~~~~~  490 (795)
T 4a2l_A          426 AGGLSILHRNSGQ------------VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSF-TTIEKEK  490 (795)
T ss_dssp             TTEEEEEETTTCC------------EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEE-EECCBCT
T ss_pred             cCceeEEeCCCCc------------EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeE-EEccccc
Confidence            7778999876522            12221     2345799999988888665544 55 545544 4443 333211 


Q ss_pred             ----CCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEE
Q psy1242         492 ----SGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRL  527 (540)
Q Consensus       492 ----~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l  527 (540)
                          .....|.++...++|.+.++.. +-|..|+.++...
T Consensus       491 ~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          491 DGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI  529 (795)
T ss_dssp             TCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE
T ss_pred             cccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE
Confidence                0112578899999998877765 6688888765444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.00  E-value=0.93  Score=46.08  Aligned_cols=161  Identities=9%  Similarity=-0.024  Sum_probs=97.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++.+.+..|+++-...+.|.+.+++.......+               .........|+++|    .+..|.....
T Consensus       161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~---------------~~~~~~P~~iavdp----~~g~ly~td~  221 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF---------------RENGSKPRAIVVDP----VHGFMYWTDW  221 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE---------------ECSSCCEEEEEEET----TTTEEEEEEC
T ss_pred             cccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE---------------eCCCCCcceEEEec----ccCeEEEEeC
Confidence            4566777766667777777889999998744433333               33345578999998    5555554442


Q ss_pred             --CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcEEEEecCC-CCC
Q psy1242         419 --DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTTFGDLLRSLDPP-SGF  494 (540)
Q Consensus       419 --DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~~g~~~~~l~~~-~~~  494 (540)
                        .+.|...+++...           ....+...-.....|+++++++.|..+. ..+.|...+.+|...+.+... ...
T Consensus       222 ~~~~~I~~~~~dG~~-----------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l  290 (400)
T 3p5b_L          222 GTPAKIKKGGLNGVD-----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL  290 (400)
T ss_dssp             SSSCCEEEEETTSCS-----------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred             CCCCEEEEEeCCCCc-----------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence              3677777765421           1122233335678999998777666554 456677767766554444321 111


Q ss_pred             CCceEEEEeeCCCEEEE-ecCCeEEEEe-cCCcEEEee
Q psy1242         495 ASPESVVMSREGVIVVN-YERGHIAAFT-MNGNRLRHE  530 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~-~~g~~l~~~  530 (540)
                      ..+.++++. .+.+.++ ...+.|..++ .+|+.+..+
T Consensus       291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            145677773 3344444 4567888888 557655544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.88  E-value=0.16  Score=56.38  Aligned_cols=152  Identities=14%  Similarity=-0.001  Sum_probs=77.2

Q ss_pred             EEEEEecCCCEEEEEEecC-----CcEEEEEccCCeE--EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         340 NCFVTTVDSRFLLACGFWD-----NSFRVFSTDNARI--VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~D-----gsv~iwd~~~g~~--~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ..++|+|||+.|+.+. .|     ..|.++++.++..  ...+.              ..+......+.|+|    ||++
T Consensus       224 ~~~~WspDg~~l~y~~-~d~~~~~~~v~~~~lgt~~~~~~lv~~--------------~~~~~~~~~~~~Sp----Dg~~  284 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVT-KDETLRENKVWRHVMGKLQSEDVCLYE--------------EHNPLFSAFMYKAA----DTNT  284 (751)
T ss_dssp             SCCEECSSTTEEEEEE-ECTTCCEEEEEEEETTSCGGGCEEEEE--------------CCCTTCEEEEEECT----TSSE
T ss_pred             eeEEEecCCCEEEEEE-ECCCCCCCEEEEEECCCCchhcEEEEe--------------cCCCceEEEEEECC----CCCE
Confidence            4678999999865554 43     2577778776542  22221              12234567889999    9998


Q ss_pred             EEEEeC---CCcEEEEEcCCCcccccCCCCCCcc-eEEe-ccCCCCEEEEEEcCCCCEEEEEeCC--CcEEE--EeCC--
Q psy1242         413 IASGSA---DCTVLLWHWNARTQSIVGETDTPTP-RATL-TGHEQPVTSVAISAELGLVVSGSQL--GPVLV--HTTF--  481 (540)
Q Consensus       413 l~sgs~---DgtV~lWd~~~~~~~~~~~~~~~~~-~~~l-~~h~~~V~~v~~spdg~~lasgs~D--g~v~i--w~~~--  481 (540)
                      |+..+.   ...|.++|+....         .+. +..+ .+......++.|+..+.+++....+  +..+|  .+..  
T Consensus       285 l~~~~~~~~~~~l~~~d~~~~~---------~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~  355 (751)
T 2xe4_A          285 LCIGSQSPETAEVHLLDLRKGN---------AHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP  355 (751)
T ss_dssp             EEEEEECSSCEEEEEEESSSCT---------TCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST
T ss_pred             EEEEecCCCCceEEEEECCCCC---------CCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc
Confidence            876553   3356667765421         112 1233 3334455566655444444444444  33344  3443  


Q ss_pred             CcEEE-EecCCCCCCCceEEEEeeCCCEEEE--ecCCe--EEEEec
Q psy1242         482 GDLLR-SLDPPSGFASPESVVMSREGVIVVN--YERGH--IAAFTM  522 (540)
Q Consensus       482 g~~~~-~l~~~~~~~~v~~l~fspdg~~l~s--~~dg~--I~lw~~  522 (540)
                      ++... .+. +.....+..  +++.+..|+.  ..++.  |.++++
T Consensus       356 ~~~~~~li~-~~~~~~l~~--~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          356 SDWSHVLVD-HSEDVFMES--IAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TCCCCEEEC-CCSSEEEEE--EEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             ccceeeEEC-CCCCcEEEE--EEEECCEEEEEEEeCCEEEEEEEec
Confidence            22222 222 222112334  4445555544  34554  666675

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.71  E-value=0.22  Score=52.24  Aligned_cols=163  Identities=8%  Similarity=0.013  Sum_probs=92.3

Q ss_pred             EEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEe-------ccCccCCC
Q psy1242         339 HNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSR-------SECNITAD  410 (540)
Q Consensus       339 ~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~-------sp~~~~dg  410 (540)
                      ...+++.| +...|+++....+.|++.|..++.....+...            .+.......|+|       ++    +|
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~------------~~~~~~p~~ia~~~~~~~~d~----~G  204 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN------------TIPTNRIRSIAFNKKIEGYAD----EA  204 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT------------TSSCSBEEEEEECCCBTTTBC----TT
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC------------ccccCCCcEEEEeecccccCC----CC
Confidence            45677888 45557777665678999999876665444100            112235789999       99    88


Q ss_pred             cEEEEEeCCC-c------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC--
Q psy1242         411 CFIASGSADC-T------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT--  480 (540)
Q Consensus       411 ~~l~sgs~Dg-t------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~--  480 (540)
                      ++|+.+...+ .      |.+.+... .+.... ......+..+ .   ...+++++|+ +.++++-..++.|..++.  
T Consensus       205 ~~lyvad~~~~~~~~~~~V~~i~r~~-~G~~~~-~~~~~~v~~~-~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~  278 (496)
T 3kya_A          205 EYMIVAIDYDGKGDESPSVYIIKRNA-DGTFDD-RSDIQLIAAY-K---QCNGATIHPINGELYFNSYEKGQVFRLDLVD  278 (496)
T ss_dssp             CEEEEEECCCTTGGGEEEEEEEECCT-TSCCST-TSCEEEEEEE-S---CCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred             CEEEEEeCCCCCcccCceEEEEecCC-CCceee-cccceeeccC-C---CceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence            8666666543 2      44554221 111100 0000122222 1   2346788995 555666667777866643  


Q ss_pred             ------CCcE-----------EEE-ecCCCCCCCceEEEEeeCCCEEEE--ecCCeEEEEecCC
Q psy1242         481 ------FGDL-----------LRS-LDPPSGFASPESVVMSREGVIVVN--YERGHIAAFTMNG  524 (540)
Q Consensus       481 ------~g~~-----------~~~-l~~~~~~~~v~~l~fspdg~~l~s--~~dg~I~lw~~~g  524 (540)
                            ++..           ... +..... ..+..|+|+|+|++|..  ...++|+.++.++
T Consensus       279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~-~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          279 YFKTIKNGGSWDPIVKNNPNTFKQLFTIADP-SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             HHHHHHTTCCCCCBGGGCTTTEEEEEECSSS-SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccccccCceeecccccccccccceeEecCCC-CCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                  3432           112 222222 14689999999996554  3468899877764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.68  E-value=0.015  Score=64.28  Aligned_cols=158  Identities=13%  Similarity=0.017  Sum_probs=91.9

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCC----eEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNA----RIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g----~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      ..++|.+.+..|+++-...+.|+.+++...    .....+               .........|++.+.   .+.++++
T Consensus       409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i---------------~~~~~~P~glavD~~---~g~LY~t  470 (699)
T 1n7d_A          409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---------------SRDIQAPDGLAVDWI---HSNIYWT  470 (699)
T ss_dssp             CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC---------------CSCC--CCCEECCCS---SSBCEEC
T ss_pred             EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE---------------eCCCCCcceEEEEee---CCcEEEE
Confidence            456778877767666666788888888641    111111               111223456788751   4555565


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCcEEEEecCCC
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGS-QL-GPVLVHTTFGDLLRSLDPPS  492 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs-~D-g~v~iw~~~g~~~~~l~~~~  492 (540)
                      -...+.|.+.++...            ....+ .........|+++|.+..|+.+. .. +.|...+.+|.....+....
T Consensus       471 D~~~~~I~v~d~dg~------------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~  538 (699)
T 1n7d_A          471 DSVLGTVSVADTKGV------------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN  538 (699)
T ss_dssp             CTTTSCEEEEBSSSC------------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred             eccCCeEEEEecCCC------------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence            566788999887642            12222 22223456788998655444433 22 56666566665544443221


Q ss_pred             CCCCceEEEEeeCCCEEEE--ecCCeEEEEecCCcEEE
Q psy1242         493 GFASPESVVMSREGVIVVN--YERGHIAAFTMNGNRLR  528 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s--~~dg~I~lw~~~g~~l~  528 (540)
                      . ..+..|+|+|++..|+.  +..+.|..++++|....
T Consensus       539 l-~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~  575 (699)
T 1n7d_A          539 I-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  575 (699)
T ss_dssp             C-SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred             C-CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence            1 14678999998665554  34678999999875433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.67  E-value=1.1  Score=49.94  Aligned_cols=160  Identities=12%  Similarity=0.126  Sum_probs=99.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.++...++|.  |-.|+.++-|..++..+++.. .+......      .  .-....|.++...+    +|. |-.|+.
T Consensus       312 i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~------~--~l~~~~V~~i~~d~----~g~-lWiGt~  375 (795)
T 4a2l_A          312 VRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFK-NIRNIPYK------N--SLSDNVVSCIVEDK----DKN-LWIGTN  375 (795)
T ss_dssp             EEEEEECTTSC--EEEEESSSCEEEECGGGGSSE-EECCCTTS------S--SCSCSSEEEEEECT----TSC-EEEEES
T ss_pred             EEEEEEeCCcC--EEEEECCCCeEEeCCCcccce-EEcCCCCC------C--CCCCCeeEEEEECC----CCC-EEEEEC
Confidence            66777788887  456777788999987755432 22100000      0  01235699999887    665 445777


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEec---------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLT---------GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---------~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      ++-+..|+..+..            ...+.         -....|.+++..+++.+|..|+.++-+..++. +++. ..+
T Consensus       376 ~~Gl~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~  442 (795)
T 4a2l_A          376 DGGLNLYNPITQR------------FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENF  442 (795)
T ss_dssp             SSCEEEECTTTCC------------EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEE
T ss_pred             CCCeEEEcCCCCc------------EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEe
Confidence            7778889865422            11111         12357999999888884566777666766665 4544 333


Q ss_pred             cC-----CCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEee
Q psy1242         489 DP-----PSGFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       489 ~~-----~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~  530 (540)
                      ..     +..  .|.++...++|.+.++.. +.|.+|+++......+
T Consensus       443 ~~~~~~l~~~--~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~  486 (795)
T 4a2l_A          443 NQRNSQLVNE--NVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTI  486 (795)
T ss_dssp             CTTTSCCSCS--CEEEEEECSSSCEEEEES-SCEEEEETTTTEEEEC
T ss_pred             ecCCCCcCCC--eeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEc
Confidence            32     122  578888888898777655 5688899875544443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.48  E-value=1.7  Score=47.26  Aligned_cols=57  Identities=7%  Similarity=0.008  Sum_probs=33.5

Q ss_pred             EEEEcCCCCEEEEEeCC-----------CcEEEEeC-CCcEEEEecC-CCCCCCceEEEEeeCCCEEEEec
Q psy1242         456 SVAISAELGLVVSGSQL-----------GPVLVHTT-FGDLLRSLDP-PSGFASPESVVMSREGVIVVNYE  513 (540)
Q Consensus       456 ~v~~spdg~~lasgs~D-----------g~v~iw~~-~g~~~~~l~~-~~~~~~v~~l~fspdg~~l~s~~  513 (540)
                      +++..|++++++.|+.+           ..+.+|+. +.+. ..+.. ........+..+.++|++++.|+
T Consensus       460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-EECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce-eecCCCCCccccccHhhcCCCcEEEecCC
Confidence            44566899999998754           34677765 3332 22221 11111223455678999999875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.48  E-value=0.96  Score=48.95  Aligned_cols=159  Identities=8%  Similarity=-0.004  Sum_probs=96.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs  417 (540)
                      ...+++++.+..|+.+-...+.|..++++.......+              +.........|++++    .+. +.++-.
T Consensus        42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v--------------~~~~~~~P~GlAvD~----~~~~ly~~d~  103 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------------VVSGLLSPDGLACDW----LGEKLYWTDS  103 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE--------------ECSSCSCEEEEEEET----TTTEEEEEET
T ss_pred             eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE--------------EeCCCCCcCeEEEEe----cCCEEEEEeC
Confidence            4567788877777777666788888888744221222              022235678899987    444 455555


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGF  494 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~  494 (540)
                      ..+.|.+.+++...            ...+ .+.-.....|++.|.+..|.....  .+.|..-..+|.....+..... 
T Consensus       104 ~~~~I~v~~~dG~~------------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~-  170 (619)
T 3s94_A          104 ETNRIEVSNLDGSL------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI-  170 (619)
T ss_dssp             TTTEEEEEETTSCS------------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC-
T ss_pred             CCCEEEEEECCCCC------------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC-
Confidence            67899999876522            2222 233345668999997655554443  3445444566765544432221 


Q ss_pred             CCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEE
Q psy1242         495 ASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLR  528 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~  528 (540)
                      ..+..|+++++++.|..+  ..+.|..++++|....
T Consensus       171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~  206 (619)
T 3s94_A          171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ  206 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE
Confidence            157899999987766554  4578999998875443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.40  E-value=0.15  Score=54.77  Aligned_cols=50  Identities=22%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         461 AELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       461 pdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                      ..+..++.++.||.++.++. +|+.+.++...... .-.-+.+..+|+.++.
T Consensus       473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~-~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          473 TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG-IGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEEE
T ss_pred             ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc-EeeeEEEEECCEEEEE
Confidence            34667778999999998875 99999888765431 1123456678876554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.31  E-value=1.4  Score=47.02  Aligned_cols=60  Identities=13%  Similarity=0.062  Sum_probs=38.0

Q ss_pred             CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCC
Q psy1242         472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHND  534 (540)
Q Consensus       472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~  534 (540)
                      +|.|..++. +|+.+.++.....   +.+..+...+..++. ..++.|+.+|.. |+.+-.+....
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~---~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  505 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS  505 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCeEEEEECCCCCEEEEecCCCC---ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence            466777765 7888777654332   233333334444444 568999999976 99888776443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.19  E-value=1.6  Score=47.16  Aligned_cols=159  Identities=9%  Similarity=0.005  Sum_probs=98.2

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++.+.+..|+.+-...+.|+.++.+.......+               .........+++.+.   .++..++-+.
T Consensus       351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~---------------~~~~~~p~GlAvD~~---~~~lY~tD~~  412 (619)
T 3s94_A          351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV---------------TAQIAHPDGIAVDWV---ARNLYWTDTG  412 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CSSCSCCCEEEEETT---TTEEEEEETT
T ss_pred             cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE---------------ECCCCCcCceEEecc---cCcEEEEeCC
Confidence            5677788866667777666788888888743333233               233356678888862   4555666667


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGFA  495 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~~  495 (540)
                      .++|.+-+++..            ....+ .+.-....+|++.|....|.....  .+.|.....+|.....+.... -.
T Consensus       413 ~~~I~v~~~~G~------------~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~-l~  479 (619)
T 3s94_A          413 TDRIEVTRLNGT------------MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTS-LG  479 (619)
T ss_dssp             TTEEEEEETTSC------------SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CS
T ss_pred             CCcEEEEeCCCC------------eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCC-CC
Confidence            789999887652            12233 233456789999997444444332  244544455665444443221 12


Q ss_pred             CceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEE
Q psy1242         496 SPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLR  528 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~  528 (540)
                      .+..|++.+++..|..+  ..+.|..++++|....
T Consensus       480 ~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~  514 (619)
T 3s94_A          480 WPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRR  514 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred             CCeeeEEcccCCEEEEEECCCCEEEEEecCCCceE
Confidence            57899999877666654  4578999998876443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.11  E-value=0.54  Score=49.29  Aligned_cols=166  Identities=8%  Similarity=-0.033  Sum_probs=99.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEcc-------CCeE-----------EEEEecccceeeeeeEEEeeccCcceEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTD-------NARI-----------VQIIFGHYGVVTSRIVQIIFGHYGVVTCL  400 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~-------~g~~-----------~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l  400 (540)
                      ...++++|++.+|+++-..++.|..+|+.       ++..           ...+            .. .+....-..|
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l------------~~-~~~~~~p~~i  315 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQL------------FT-IADPSWEFQI  315 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEE------------EE-CSSSSCCEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccccee------------Ee-cCCCCCceEE
Confidence            45667889766688888888999999987       5553           1122            00 1223446789


Q ss_pred             EeccCccCCCcE-EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccC---------------CCCEE-EEEEc---
Q psy1242         401 SRSECNITADCF-IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH---------------EQPVT-SVAIS---  460 (540)
Q Consensus       401 ~~sp~~~~dg~~-l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h---------------~~~V~-~v~~s---  460 (540)
                      +|+|    +|+. .++-+....|+.++.+.......       ...++.+.               -..-. .++..   
T Consensus       316 a~~p----~G~~lYvaD~~~h~I~kid~dg~~~~~~-------~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~  384 (496)
T 3kya_A          316 FIHP----TGKYAYFGVINNHYFMRSDYDEIKKEFI-------TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPD  384 (496)
T ss_dssp             EECT----TSSEEEEEETTTTEEEEEEEETTTTEEC-------CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTT
T ss_pred             EEcC----CCCEEEEEeCCCCEEEEEecCCCcceec-------ccEEecCCCCCCcccCCcccccccCCCeEEEEEcccc
Confidence            9999    8985 45555678888877654221100       00111110               11233 45554   


Q ss_pred             ----CCCCEEEEEeCCCcEEEEeCCCcEEEEecCC--------------CC--------CCCceEEEEeeC-CCEEEE-e
Q psy1242         461 ----AELGLVVSGSQLGPVLVHTTFGDLLRSLDPP--------------SG--------FASPESVVMSRE-GVIVVN-Y  512 (540)
Q Consensus       461 ----pdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~--------------~~--------~~~v~~l~fspd-g~~l~s-~  512 (540)
                          +++.++++-+....|+..+.+|.. .++.+.              ..        ...+..|++.++ |.+.++ .
T Consensus       385 ~~~~~~g~lyVaD~~N~rIr~i~~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~  463 (496)
T 3kya_A          385 YTGEEEYDFYFVDRLNFCVRKVTPEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQ  463 (496)
T ss_dssp             CCSSCCEEEEEEEGGGTEEEEECTTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEET
T ss_pred             ccccCCCeEEEEECCCCEEEEEeCCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeC
Confidence                566677776777788888777854 444321              00        114678999997 766555 4


Q ss_pred             cCCeEEEEecCCcEEEe
Q psy1242         513 ERGHIAAFTMNGNRLRH  529 (540)
Q Consensus       513 ~dg~I~lw~~~g~~l~~  529 (540)
                      ..++|+.+++++..-..
T Consensus       464 ~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          464 VGHTIRTISMEQEENVA  480 (496)
T ss_dssp             TTTEEEEEEECCCC---
T ss_pred             CCCEEEEEECCCCcccc
Confidence            56889999998765443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.08  E-value=1.5  Score=43.63  Aligned_cols=142  Identities=13%  Similarity=0.084  Sum_probs=87.0

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc---EEEEEeC---CCcEEE
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC---FIASGSA---DCTVLL  424 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~---~l~sgs~---DgtV~l  424 (540)
                      ++++....+-+.+||+ +|+.++.+               ..  +.++.|..-|.+.-.|+   ++++...   +.+|++
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~---------------~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~v  103 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSY---------------NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI  103 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEE---------------CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEE
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEc---------------cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEE
Confidence            3455556788999999 69998888               32  45666665551000222   2333333   579999


Q ss_pred             EEcCCCcccccCCCCCCcceEEecc------CC-CCEEEEEE--cCC-CC-EEEEEeCCCcEEEEeC--------CCcEE
Q psy1242         425 WHWNARTQSIVGETDTPTPRATLTG------HE-QPVTSVAI--SAE-LG-LVVSGSQLGPVLVHTT--------FGDLL  485 (540)
Q Consensus       425 Wd~~~~~~~~~~~~~~~~~~~~l~~------h~-~~V~~v~~--spd-g~-~lasgs~Dg~v~iw~~--------~g~~~  485 (540)
                      ++++....          .+..+..      .. ..+..+|+  +|. +. +++....+|.+..|..        +++++
T Consensus       104 f~iDp~~~----------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV  173 (355)
T 3amr_A          104 YAIDGKNG----------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV  173 (355)
T ss_dssp             EEECTTTC----------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCC----------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE
Confidence            98753221          1222211      11 45666777  774 44 5777778898877622        34678


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEEecC-CeEEEEecC
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVNYER-GHIAAFTMN  523 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s~~d-g~I~lw~~~  523 (540)
                      +++....   .+..++..+....|+.+.. .-|..++.+
T Consensus       174 R~f~lgs---q~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          174 RAFKMNS---QTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEECSS---CEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             EEecCCC---CcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            8887764   5788999988777777654 445555633

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.07  E-value=0.085  Score=58.24  Aligned_cols=160  Identities=11%  Similarity=0.017  Sum_probs=91.6

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-  418 (540)
                      ..+++.+.+..|+++-...+.|.+.++.... ...+.              .........|+++|    .+.+|+.+.. 
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~--------------~~~~~~P~giavDp----~~g~ly~td~~  516 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF--------------REQGSKPRAIVVDP----VHGFMYWTDWG  516 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEEC--------------CCSSCCCCCEECCS----SSSCCEECCCS
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEE--------------eCCCCCcceEEEcc----CCCcEEEcccC
Confidence            3456665555566776667889999987443 33330              22234467889998    5554444432 


Q ss_pred             C-CcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCcEEEEecCC-CCC
Q psy1242         419 D-CTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELG-LVVSGSQLGPVLVHTTFGDLLRSLDPP-SGF  494 (540)
Q Consensus       419 D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~-~lasgs~Dg~v~iw~~~g~~~~~l~~~-~~~  494 (540)
                      . +.|.+.++....            ...+ ...-.....|+|+|++. ++++-+..+.|...+.+|...+.+... ...
T Consensus       517 ~~~~I~~~~~dG~~------------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~  584 (699)
T 1n7d_A          517 TPAKIKKGGLNGVD------------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL  584 (699)
T ss_dssp             SSCCEEBCCSSSCC------------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSC
T ss_pred             CCCeEEEEeCCCCC------------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcC
Confidence            2 567766654321            1122 12223456799998765 445555667787777766555544322 111


Q ss_pred             CCceEEEEeeCCCEEEE-ecCCeEEEEec-CCcEEEeee
Q psy1242         495 ASPESVVMSREGVIVVN-YERGHIAAFTM-NGNRLRHES  531 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~~-~g~~l~~~~  531 (540)
                      ..+..|++..+ .++++ ...+.|..++. +|+.+..+.
T Consensus       585 ~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          585 AHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             SSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             CCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            13456777554 33333 45688999997 477766653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.04  E-value=1.3  Score=49.04  Aligned_cols=161  Identities=14%  Similarity=0.082  Sum_probs=94.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.++...++|. | -.|..++-+..++..+++.. .+...            ......|.++...+    +|...+ |+.
T Consensus       409 v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~~-~~~~~------------~~~~~~v~~i~~d~----~g~lwi-gt~  468 (781)
T 3v9f_A          409 VLCSLKDSEGN-L-WFGTYLGNISYYNTRLKKFQ-IIELE------------KNELLDVRVFYEDK----NKKIWI-GTH  468 (781)
T ss_dssp             EEEEEECTTSC-E-EEEETTEEEEEECSSSCEEE-ECCST------------TTCCCCEEEEEECT----TSEEEE-EET
T ss_pred             eEEEEECCCCC-E-EEEeccCCEEEEcCCCCcEE-EeccC------------CCCCCeEEEEEECC----CCCEEE-EEC
Confidence            56666677787 3 45666677888988776543 22000            01345788998887    675444 555


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCC--
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSG--  493 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~--  493 (540)
                       +-+.+++..+..-.         ......   .....|.++...++|.+.+....+| +..++........+....+  
T Consensus       469 -~Gl~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~  537 (781)
T 3v9f_A          469 -AGVFVIDLASKKVI---------HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFC  537 (781)
T ss_dssp             -TEEEEEESSSSSCC---------EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCS
T ss_pred             -CceEEEeCCCCeEE---------ecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCC
Confidence             55777886542211         111000   1146799999999888665544455 4445554444444432221  


Q ss_pred             CCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEee
Q psy1242         494 FASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~  530 (540)
                      ...|.++...++|.+.++..+|.|..|+..++.+..+
T Consensus       538 ~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~  574 (781)
T 3v9f_A          538 SNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVF  574 (781)
T ss_dssp             CSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEE
T ss_pred             CCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEc
Confidence            1157888888899877776655558888775444443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.03  E-value=1  Score=49.98  Aligned_cols=161  Identities=11%  Similarity=0.062  Sum_probs=94.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.++...++|.  |-.|..++-|.+++..+++... +.. .          -......|.++...+    +|.+. .|+.
T Consensus       365 v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~-~~~-~----------~~~~~~~v~~i~~d~----~g~lW-igt~  425 (781)
T 3v9f_A          365 VSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIY-NKE-N----------RELLSNSVLCSLKDS----EGNLW-FGTY  425 (781)
T ss_dssp             EEEEEECTTSC--EEEEEBSSCEEEEETTEEEEEC-C----------------CCCSBEEEEEECT----TSCEE-EEET
T ss_pred             eEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEE-ccC-C----------CCCCCcceEEEEECC----CCCEE-EEec
Confidence            56676677787  3566666778889876543221 100 0          012346789998887    66544 4676


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCC---
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPS---  492 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~---  492 (540)
                      ++-+..++..+..            ...+.   .....|.++...+++.+.+ |+..|..++...+++.........   
T Consensus       426 ~~Gl~~~~~~~~~------------~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~  492 (781)
T 3v9f_A          426 LGNISYYNTRLKK------------FQIIELEKNELLDVRVFYEDKNKKIWI-GTHAGVFVIDLASKKVIHHYDTSNSQL  492 (781)
T ss_dssp             TEEEEEECSSSCE------------EEECCSTTTCCCCEEEEEECTTSEEEE-EETTEEEEEESSSSSCCEEECTTTSSC
T ss_pred             cCCEEEEcCCCCc------------EEEeccCCCCCCeEEEEEECCCCCEEE-EECCceEEEeCCCCeEEecccCccccc
Confidence            6678888765421            12221   1346789999888887554 444554344333444433222110   


Q ss_pred             CCCCceEEEEeeCCCEEEEecCCeEEEEecCCcEEEeee
Q psy1242         493 GFASPESVVMSREGVIVVNYERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~~l~~~~  531 (540)
                      ....|.+++..++|.+.++..++-|..|+.+++.+..+.
T Consensus       493 ~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~  531 (781)
T 3v9f_A          493 LENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFN  531 (781)
T ss_dssp             SCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEEC
T ss_pred             ccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEcc
Confidence            012578899999999877765455788888766655543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.02  E-value=1.6  Score=48.68  Aligned_cols=159  Identities=10%  Similarity=-0.029  Sum_probs=94.5

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-  418 (540)
                      ..+++.+.++.|+++-...+.|.+.+++... ...+.              .........|+++|    .+..|+.+.. 
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~--------------~~~l~~P~gIaVDp----~~g~LYwtD~g  534 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF--------------RENGSKPRAIVVDP----VHGFMYWTDWG  534 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE--------------ECTTCCEEEEEEET----TTTEEEEEECS
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEE--------------eCCCCCcceEEEec----CCCCEEEecCC
Confidence            4567788887788888888899999987443 33330              33445688999998    5445554443 


Q ss_pred             C-CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCcEEEEecC-CCCCC
Q psy1242         419 D-CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTTFGDLLRSLDP-PSGFA  495 (540)
Q Consensus       419 D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~~g~~~~~l~~-~~~~~  495 (540)
                      . +.|...+++...           ....+...-.....|++++....|..+. ..+.|...+.+|..++.+.. .....
T Consensus       535 ~~~~I~~~~~dG~~-----------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~  603 (791)
T 3m0c_C          535 TPAKIKKGGLNGVD-----------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA  603 (791)
T ss_dssp             SSCEEEEEETTSCC-----------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTS
T ss_pred             CCCeEEEEecCCCc-----------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccC
Confidence            3 677777765421           1222233345788999998766665554 45567666676665544432 22211


Q ss_pred             CceEEEEeeCCCEEEE--ecCCeEEEEec-CCcEEEee
Q psy1242         496 SPESVVMSREGVIVVN--YERGHIAAFTM-NGNRLRHE  530 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s--~~dg~I~lw~~-~g~~l~~~  530 (540)
                      .+.+|++.  +..|+.  ...+.|...+. +|+.+..+
T Consensus       604 ~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          604 HPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             SEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            34566663  334443  34577877774 46544433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.94  E-value=1.4  Score=43.19  Aligned_cols=152  Identities=6%  Similarity=-0.063  Sum_probs=85.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++.++++ +++.+. +|.+..-+-..|+.-..+.              ......+..+++.+    ++..+ .++.
T Consensus       165 ~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~--------------~~~~~~~~~~~~~~----~g~~~-~~~~  223 (327)
T 2xbg_A          165 MRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN--------------RTTSRRLHNMGFTP----DGRLW-MIVN  223 (327)
T ss_dssp             EEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE--------------CCSSSCEEEEEECT----TSCEE-EEET
T ss_pred             eEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC--------------CCCCCccceeEECC----CCCEE-EEeC
Confidence            45677788888 456554 4544332211133332221              23456788889988    77655 4556


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecC---CCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDP---PSGF  494 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~---~~~~  494 (540)
                      +|.+.+.+.+... .       .+.+..- ..+...+.++++.+++.+++++. +|.+..-...|+.-..+..   ... 
T Consensus       224 ~G~~~~s~~D~G~-t-------W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S~DgG~tW~~~~~~~~~~~-  293 (327)
T 2xbg_A          224 GGKIAFSDPDNSE-N-------WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCSQDGGQTWQQDVDVKKVPS-  293 (327)
T ss_dssp             TTEEEEEETTEEE-E-------ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEESSTTSSCEECGGGTTSSS-
T ss_pred             CceEEEecCCCCC-e-------eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEEeCCCCcccEEcCccCCCCC-
Confidence            7888776422110 0       0000000 01223588899998887766654 6777443333443333332   122 


Q ss_pred             CCceEEEEeeCCCEEEEecCCeEEEEec
Q psy1242         495 ASPESVVMSREGVIVVNYERGHIAAFTM  522 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~~dg~I~lw~~  522 (540)
                       .+.++.|.+++.++++|.+|.|.-++-
T Consensus       294 -~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          294 -NFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             -CCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             -CeEEEEEECCCceEEEcCCceEEEEcC
Confidence             468899988888888898998776653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.92  E-value=2.3  Score=45.62  Aligned_cols=61  Identities=16%  Similarity=0.200  Sum_probs=38.3

Q ss_pred             CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCCc
Q psy1242         472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHNDN  535 (540)
Q Consensus       472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~  535 (540)
                      +|.|..|+. +|+.+.+......   +..-.....|.+|+. ..|+.++.||.+ |+.|-.+.....
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g  528 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cceEEEEECCCCCEEEEecCCCC---CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence            566777765 8888766654322   222222234555555 468999999986 999887764443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.91  E-value=2.2  Score=46.16  Aligned_cols=166  Identities=9%  Similarity=-0.062  Sum_probs=99.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEEEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~sgs  417 (540)
                      ...+++.+....|+.+-...+.|+.++.+.......+.....         .......+..|++..    .++ +..+.+
T Consensus       342 ~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~---------~~~~~~~p~glAvD~----~~~nLY~td~  408 (628)
T 4a0p_A          342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVP---------SQNLEIQPYDLSIDI----YSRYIYWTCE  408 (628)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-----------------CCCEEEEEEET----TTTEEEEEET
T ss_pred             ceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccc---------cccccCCcceEEeec----cCCeEEEEcC
Confidence            566778887776777766677788887764332222300000         001234678899987    544 555666


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcC-CCCEEEEEeCCC--cEEEEeCCCcEEEEecCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISA-ELGLVVSGSQLG--PVLVHTTFGDLLRSLDPPSG  493 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~sp-dg~~lasgs~Dg--~v~iw~~~g~~~~~l~~~~~  493 (540)
                      ..++|.+-+++.            +....+ ........+|++.| .|.++.+-....  .|.....+|.....+....-
T Consensus       409 ~~~~I~v~~~~G------------~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l  476 (628)
T 4a0p_A          409 ATNVINVTRLDG------------RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGL  476 (628)
T ss_dssp             TTTEEEEEETTS------------CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSC
T ss_pred             CCCEEEEEECCC------------CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccC
Confidence            788898888764            222233 33445688999999 555555543332  34334556765554433221


Q ss_pred             CCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242         494 FASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~  530 (540)
                       ..+..|++.++++.|..+  ..+.|..++++|.....+
T Consensus       477 -~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~  514 (628)
T 4a0p_A          477 -SKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL  514 (628)
T ss_dssp             -SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             -CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEE
Confidence             157899999987766654  357899999987654443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.81  E-value=2.9  Score=40.88  Aligned_cols=150  Identities=11%  Similarity=0.061  Sum_probs=85.8

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      ..+++.++++ +++++. ++.|.. ..+.|+.-..+.              .++...+..+++.+    ++.+++.+...
T Consensus       125 ~~i~~~~~~~-~~~~~~-~g~v~~-S~DgG~tW~~~~--------------~~~~~~~~~~~~~~----~~~~~~~g~~G  183 (327)
T 2xbg_A          125 RLIKALGNGS-AEMITN-VGAIYR-TKDSGKNWQALV--------------QEAIGVMRNLNRSP----SGEYVAVSSRG  183 (327)
T ss_dssp             EEEEEEETTE-EEEEET-TCCEEE-ESSTTSSEEEEE--------------CSCCCCEEEEEECT----TSCEEEEETTS
T ss_pred             EEEEEECCCC-EEEEeC-CccEEE-EcCCCCCCEEee--------------cCCCcceEEEEEcC----CCcEEEEECCC
Confidence            4455566666 456553 554422 233455444431              34456788999998    88877766544


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CcEEEEecCC--CCCCC
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GDLLRSLDPP--SGFAS  496 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~~~~~l~~~--~~~~~  496 (540)
                      +..+-+|-....         .+.+  -......+..+++.+++.+++ ++.+|.+++...+ |+.-..+..+  .....
T Consensus       184 ~~~~S~d~gG~t---------W~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~  251 (327)
T 2xbg_A          184 SFYSTWEPGQTA---------WEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVG  251 (327)
T ss_dssp             SEEEEECTTCSS---------CEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSC
T ss_pred             cEEEEeCCCCCc---------eeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcc
Confidence            434444421111         1122  123456788899999887664 4557877766433 4433333322  11114


Q ss_pred             ceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         497 PESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       497 v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      +.++++.+++.+++++.++.| .++.+
T Consensus       252 ~~~v~~~~~~~~~~~g~~g~i-~~S~D  277 (327)
T 2xbg_A          252 FLDLAYRTPNEVWLAGGAGAL-LCSQD  277 (327)
T ss_dssp             EEEEEESSSSCEEEEESTTCE-EEESS
T ss_pred             eEEEEecCCCEEEEEeCCCeE-EEeCC
Confidence            678899988998888888877 44555

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.28  E-value=3.7  Score=44.08  Aligned_cols=59  Identities=19%  Similarity=0.099  Sum_probs=35.2

Q ss_pred             CCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecC
Q psy1242         472 LGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHN  533 (540)
Q Consensus       472 Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~  533 (540)
                      +|.+.-|+. +|+.+.......   +...-.+...|.+|+. ..|+.++.||.+ |+.|-+....
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERF---AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCeEEEEECCCCCEEeEecCCC---CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence            356666665 788776664322   1122122334555554 468999999976 8888776533

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.15  E-value=0.68  Score=49.73  Aligned_cols=48  Identities=19%  Similarity=0.243  Sum_probs=35.3

Q ss_pred             CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEE
Q psy1242         462 ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVV  510 (540)
Q Consensus       462 dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~  510 (540)
                      .+.+++.|+.||.++.++. +|+.+..++...+. .-.-+.+..+|+..+
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~-~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQDGEQYL  544 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc-ccCceEEEECCEEEE
Confidence            4678888999999999875 99999988876541 122367778887443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=94.14  E-value=1.8  Score=43.22  Aligned_cols=145  Identities=9%  Similarity=0.005  Sum_probs=79.2

Q ss_pred             cCCcEEEEEccC--CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc--EEEEEeC--CCcEEEEEcCCC
Q psy1242         357 WDNSFRVFSTDN--ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC--FIASGSA--DCTVLLWHWNAR  430 (540)
Q Consensus       357 ~Dgsv~iwd~~~--g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~--~l~sgs~--DgtV~lWd~~~~  430 (540)
                      .+|.|.++|.++  ++. ..+.....        .+.........|.+.+.  .+|.  ++++-..  +.+|.+|+++..
T Consensus        81 ~~G~I~~~d~~~~~~~~-~~l~~~g~--------~~~~~~f~PhGi~~~~d--~dg~~~L~Vvnh~~~~s~ielf~~d~~  149 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV-SELEIIGN--------TLDISSFNPHGISTFID--DDNTVYLLVVNHPGSSSTVEVFKFQEE  149 (355)
T ss_dssp             -CCEEEEEETTSSSCCE-EECEEECS--------SCCGGGCCEEEEEEEEC--TTCCEEEEEEECSTTCCEEEEEEEETT
T ss_pred             CCCeEEEEecCCCCCce-EEEEccCC--------CCCcCceeeeeeEEEEC--CCCcEEEEEEECCCCCCeEEEEEEECC
Confidence            688999999873  332 22210000        00112335566666541  0242  3344333  678899988753


Q ss_pred             cccccCCCCCCcceEEeccC-CCCEEEEEEcCCCCEEEEEeC---C--------------CcEEEEeCCCcEEEEecCCC
Q psy1242         431 TQSIVGETDTPTPRATLTGH-EQPVTSVAISAELGLVVSGSQ---L--------------GPVLVHTTFGDLLRSLDPPS  492 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h-~~~V~~v~~spdg~~lasgs~---D--------------g~v~iw~~~g~~~~~l~~~~  492 (540)
                      ...       ...+..+.+. -...+.+++.++|.+.++...   |              |.|.-++. ++......+ -
T Consensus       150 ~~~-------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-~~~~~~~~~-l  220 (355)
T 3sre_A          150 EKS-------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVAEG-F  220 (355)
T ss_dssp             TTE-------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-TCCEEEEEE-E
T ss_pred             CCE-------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-CeEEEeecC-C
Confidence            221       1234444443 236789999999988777641   1              23322333 222222211 1


Q ss_pred             CCCCceEEEEeeCCCEEEEec--CCeEEEEecC
Q psy1242         493 GFASPESVVMSREGVIVVNYE--RGHIAAFTMN  523 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l~s~~--dg~I~lw~~~  523 (540)
                      .  ..+.++|||||+.|+.++  .++|..|+++
T Consensus       221 ~--~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          221 D--FANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             S--SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             c--ccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            1  468999999999887753  6889999986

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.83  E-value=1.1  Score=49.06  Aligned_cols=163  Identities=14%  Similarity=0.120  Sum_probs=88.8

Q ss_pred             EEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEE-EEeccCccCCCcEEEEEeC------CCcEEE
Q psy1242         352 LACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTC-LSRSECNITADCFIASGSA------DCTVLL  424 (540)
Q Consensus       352 lasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~-l~~sp~~~~dg~~l~sgs~------DgtV~l  424 (540)
                      ++.++.|+.|..+|..+|+.+........           .....+++ ..+.     ++ .++.++.      ++.|..
T Consensus       120 v~v~~~dg~l~alD~~tG~~~W~~~~~~~-----------~~~~~~~~~P~v~-----~~-~v~vg~~~~~~~~~g~v~a  182 (668)
T 1kv9_A          120 VYVGTLDGRLIALDAKTGKAIWSQQTTDP-----------AKPYSITGAPRVV-----KG-KVIIGNGGAEYGVRGFVSA  182 (668)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSCT-----------TSSCBCCSCCEEE-----TT-EEEECCBCTTTCCBCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEeeeeccCCC-----------CCcceecCCCEEE-----CC-EEEEeCCCCCcCCCCEEEE
Confidence            56677899999999999999877632100           00011111 0111     34 3444432      578888


Q ss_pred             EEcCCCcccccCCCCCCcceE------------Ee--------ccCCCCEEEEEEcCCCCEEEEEeCCCc----------
Q psy1242         425 WHWNARTQSIVGETDTPTPRA------------TL--------TGHEQPVTSVAISAELGLVVSGSQLGP----------  474 (540)
Q Consensus       425 Wd~~~~~~~~~~~~~~~~~~~------------~l--------~~h~~~V~~v~~spdg~~lasgs~Dg~----------  474 (540)
                      +|..+++...........+..            +.        .++......+++.++..+++.++.++.          
T Consensus       183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~  262 (668)
T 1kv9_A          183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG  262 (668)
T ss_dssp             EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred             EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCC
Confidence            887764422110000000000            00        011122235688888888888887763          


Q ss_pred             ---------EEEEe-CCCcEEEEecCC--CCC-----CCceEEEEeeCCC---EEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         475 ---------VLVHT-TFGDLLRSLDPP--SGF-----ASPESVVMSREGV---IVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       475 ---------v~iw~-~~g~~~~~l~~~--~~~-----~~v~~l~fspdg~---~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                               |..++ .+|+.+..++..  ..+     .++....+..+|+   .|+. ..+|.++++|.. |+++....
T Consensus       263 ~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          263 GGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence                     65565 489988777642  211     1223333445776   4555 468999999976 88885443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.55  E-value=3  Score=42.56  Aligned_cols=147  Identities=7%  Similarity=0.044  Sum_probs=87.5

Q ss_pred             EecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeec--cCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242         344 TTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG--HYGVVTCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       344 ~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~--h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      .+.+|..++++-  ++.||.-++..+..-+.+..             ..  --+.|..+..+|    +|++|+..+ +.+
T Consensus        28 ~~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~-------------~~~i~f~~i~qlvlSp----sG~lLAl~g-~~~   87 (452)
T 3pbp_A           28 SSQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNF-------------SRHLVLDDTFHVISST----SGDLLCLFN-DNE   87 (452)
T ss_dssp             EETTTTEEEEEE--TTEEEEEETTTCSSCEEEEC-------------TTTCCCCTTCEEEECT----TSSEEEEEC-SSE
T ss_pred             EEcCCCEEEEEE--CCEEEEEECCCCCcceEEec-------------CcccccCceeEEEECC----CCCEEEEec-CCe
Confidence            456777754443  68999888875443444410             11  123577899999    999998775 568


Q ss_pred             EEEEEcCCCcccccCCCC-CCcceEEecc------CCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC---cEEEEe
Q psy1242         422 VLLWHWNARTQSIVGETD-TPTPRATLTG------HEQPVTSVAISAE---LGLVVSGSQLGPVLVHTTFG---DLLRSL  488 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~-~~~~~~~l~~------h~~~V~~v~~spd---g~~lasgs~Dg~v~iw~~~g---~~~~~l  488 (540)
                      |.|-.+............ ..-..+.+.-      ...+|..+.|+|-   +..|++-..|++|++|+.+.   ++. .+
T Consensus        88 V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L  166 (452)
T 3pbp_A           88 IFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VL  166 (452)
T ss_dssp             EEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EE
T ss_pred             EEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-ch
Confidence            888887632211100000 0001122211      2567999999995   46899999999999997632   222 44


Q ss_pred             cCCCC-------CCCceEEEEeeCCCEEEE
Q psy1242         489 DPPSG-------FASPESVVMSREGVIVVN  511 (540)
Q Consensus       489 ~~~~~-------~~~v~~l~fspdg~~l~s  511 (540)
                      .....       ...|.+++|+.+|-.|..
T Consensus       167 ~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          167 NKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             SCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             hccccccCCCcccceEEEEEEcCCCcEEEE
Confidence            32111       025678888886654443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.31  E-value=7.1  Score=38.86  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=82.5

Q ss_pred             CCC-EEEEEEec--CCcEEEEEccCCeEEEEEecccceeeeeeEEEeecc-CcceEEEEeccCccCCCcEEEEEeC---C
Q psy1242         347 DSR-FLLACGFW--DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGH-YGVVTCLSRSECNITADCFIASGSA---D  419 (540)
Q Consensus       347 dg~-~llasgs~--Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h-~~~Vt~l~~sp~~~~dg~~l~sgs~---D  419 (540)
                      +|+ +|+++-..  +.++.+|+++.+.....+           +.++.+. -...+.+++.+    +|.+.++...   |
T Consensus       124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~-----------~~~~~g~~~~~pND~~v~~----~G~fyvt~~~~ftd  188 (355)
T 3sre_A          124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLH-----------LKTIRHKLLPSVNDIVAVG----PEHFYATNDHYFID  188 (355)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEE-----------EEEECCTTCSSEEEEEEEE----TTEEEEEESCSCSS
T ss_pred             CCcEEEEEEECCCCCCeEEEEEEECCCCEEEE-----------EeccccCCCCCCceEEEeC----CCCEEecCCcEeCC
Confidence            454 46666554  567888877653221111           1112322 24578899999    8987777641   1


Q ss_pred             ------------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC--CCcE
Q psy1242         420 ------------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QLGPVLVHTT--FGDL  484 (540)
Q Consensus       420 ------------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~Dg~v~iw~~--~g~~  484 (540)
                                  ..-.||.++..           + +..+...-..-+.++||||++.+..+. ..+.|..++.  +|.+
T Consensus       189 ~~~~~~e~~~~~~~g~vyr~d~~-----------~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l  256 (355)
T 3sre_A          189 PYLKSWEMHLGLAWSFVTYYSPN-----------D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL  256 (355)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECTT-----------C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             cccccchhhccCCccEEEEEECC-----------e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE
Confidence                        23344544331           1 222222334568999999998766554 5677766543  4543


Q ss_pred             --EEEecCCCCCCCceEEEEee-CCCEEEEe--cCCeEEEEecC
Q psy1242         485 --LRSLDPPSGFASPESVVMSR-EGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       485 --~~~l~~~~~~~~v~~l~fsp-dg~~l~s~--~dg~I~lw~~~  523 (540)
                        .+.+.. .+  .+..+++.+ +|.+.+++  ..++|..|+++
T Consensus       257 ~~~~~~~~-~g--~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          257 TPLRVLSF-DT--LVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEEEEC-SS--EEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             ecCEEEeC-CC--CCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence              234422 22  568899999 59877753  22345555554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.28  E-value=0.66  Score=47.44  Aligned_cols=128  Identities=11%  Similarity=0.033  Sum_probs=72.5

Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEee------ccCcceEEEEeccCccCCCcEEEE
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIF------GHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~------~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      +..||+|++| |.. .+..|.|-.+..+.....-.+-...+.   .+.+.      .....|..+.|+|... .|..|++
T Consensus        71 lvlSpsG~lL-Al~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q---~~ty~l~~~~~~~~s~I~qVlWHPl~~-~ds~LVV  144 (452)
T 3pbp_A           71 VISSTSGDLL-CLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQ---IFHYSIDEEEVGPKSSIKKVLFHPKSY-RDSCIVV  144 (452)
T ss_dssp             EEECTTSSEE-EEE-CSSEEEEEECCTTCSCCCCHHHHHTTE---EEEEEGGGCC--CCCCEEEEEECTTBG-GGCEEEE
T ss_pred             EEECCCCCEE-EEe-cCCeEEEEEecCccccCcccccccccc---eeEEEcCCcccCCCCceeEEEeccccC-CCCeEEE
Confidence            5679999964 443 367888888774321100000000000   01111      1357799999999432 4568899


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe--CCCcEE
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS--QLGPVL  476 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs--~Dg~v~  476 (540)
                      -..|++|++||+......+. .-........+......|.+++|..++-.|...+  ++|.|.
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            99999999999986221110 0000001112233446899999999876665544  788874

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.45  E-value=3.5  Score=42.64  Aligned_cols=119  Identities=8%  Similarity=0.041  Sum_probs=58.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      ...+++.|+|+ |+++-...+.|++++..+++....... ...+      ......+....|+|+|.... +..|..+. 
T Consensus        29 P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~-~~~~------~~~~g~~Gllgia~~Pdf~~-~g~lYv~~s   99 (454)
T 1cru_A           29 PHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQV-PEIV------NDADGQNGLLGFAFHPDFKN-NPYIYISGT   99 (454)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-TTCC------CCTTSSCSEEEEEECTTTTT-SCEEEEEEE
T ss_pred             ceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecC-Cccc------cccCCCCceeEEEECCCcCc-CCEEEEEEe
Confidence            45778899998 556554334688887655553322100 0000      00013466789999992211 44444333 


Q ss_pred             C------------CCcEEEEEcCCCcccccCCCCCCcce-EEec-cCCCCEEEEEEcCCCCEEEEEe
Q psy1242         418 A------------DCTVLLWHWNARTQSIVGETDTPTPR-ATLT-GHEQPVTSVAISAELGLVVSGS  470 (540)
Q Consensus       418 ~------------DgtV~lWd~~~~~~~~~~~~~~~~~~-~~l~-~h~~~V~~v~~spdg~~lasgs  470 (540)
                      .            ...|.-++........ .   ..+.+ ..+. +.......|+|.|||.+.++.+
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~-~---~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTL-E---KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEE-E---EEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCc-C---CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            2            1244444443211110 0   00111 1122 1123468899999999777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.19  E-value=8.7  Score=44.69  Aligned_cols=133  Identities=11%  Similarity=0.128  Sum_probs=74.2

Q ss_pred             CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCC
Q psy1242         358 DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGE  437 (540)
Q Consensus       358 Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~  437 (540)
                      .|.|.++++..++.....+              ....+.|++++--     .|. |++|- ..+|++|++...+      
T Consensus       863 ~Gri~vf~v~~~kL~lv~~--------------~~v~g~v~al~~~-----~g~-Lla~i-g~~l~vy~l~~~~------  915 (1158)
T 3ei3_A          863 QGRIVVFQYSDGKLQTVAE--------------KEVKGAVYSMVEF-----NGK-LLASI-NSTVRLYEWTTEK------  915 (1158)
T ss_dssp             CEEEEEEEEETTEEEEEEE--------------EEESSCEEEEEEE-----TTE-EEEEE-TTEEEEEEECTTS------
T ss_pred             ceEEEEEEEECCEEEEEEE--------------EEcCCcCEEEeee-----CCE-EEEEc-CCEEEEEECCCCc------
Confidence            4678888887544322211              2346789988754     464 44433 4799999986521      


Q ss_pred             CCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEE--EeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCC
Q psy1242         438 TDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV--HTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERG  515 (540)
Q Consensus       438 ~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~i--w~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg  515 (540)
                           .+..-..+-..|..+.+...+.+++.|..-..|.+  |......+..+........++++.|-.++.++++-.+|
T Consensus       916 -----~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~g  990 (1158)
T 3ei3_A          916 -----ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAF  990 (1158)
T ss_dssp             -----CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTS
T ss_pred             -----eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCC
Confidence                 11110111111223333335678888887666655  55533333333222222257888887777666555578


Q ss_pred             eEEEEec
Q psy1242         516 HIAAFTM  522 (540)
Q Consensus       516 ~I~lw~~  522 (540)
                      .|.+...
T Consensus       991 Nl~vl~~  997 (1158)
T 3ei3_A          991 NLFVCQK  997 (1158)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEec
Confidence            8888754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.08  E-value=10  Score=37.61  Aligned_cols=128  Identities=9%  Similarity=0.056  Sum_probs=79.7

Q ss_pred             ceEEEEe--ccCccCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC
Q psy1242         396 VVTCLSR--SECNITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL  472 (540)
Q Consensus       396 ~Vt~l~~--sp~~~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D  472 (540)
                      .+-.+++  +|.   .+. +++....+|.+..|++......    ....+.++.+.- .+.+-.|...++...|..+-.+
T Consensus       129 ~pyGlcly~~~~---~g~~yafV~~k~G~~~q~~l~~~~~g----~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd  200 (355)
T 3amr_A          129 EVYGFTLYHSQK---TGKYYAMVTGKEGEFEQYELKADKNG----YISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEED  200 (355)
T ss_dssp             SCCCEEEEECTT---TCCEEEEEECSSSEEEEEEEEECTTS----CEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETT
T ss_pred             CeeEEEEEecCC---CCcEEEEEECCCCeEEEEEEEeCCCC----cccceEEEEecC-CCCcceEEEcCCCCeEEEeccc
Confidence            4445565  662   343 6788888999999998532110    011345666643 4578888899988899999988


Q ss_pred             CcEEEEeC------CCcEEEEecCCCCCCCceEEEEe--eCCC-EEEEe--cCCeEEEEecC--CcEEEeee
Q psy1242         473 GPVLVHTT------FGDLLRSLDPPSGFASPESVVMS--REGV-IVVNY--ERGHIAAFTMN--GNRLRHES  531 (540)
Q Consensus       473 g~v~iw~~------~g~~~~~l~~~~~~~~v~~l~fs--pdg~-~l~s~--~dg~I~lw~~~--g~~l~~~~  531 (540)
                      .-|..++.      +++.+..+....-...+..|++-  ++|+ +|+++  .+++..+|+.+  .+.+..+.
T Consensus       201 ~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          201 EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            65533342      24566555322111157888884  5555 55554  36789999986  56777764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.68  E-value=2.6  Score=41.93  Aligned_cols=147  Identities=12%  Similarity=0.075  Sum_probs=75.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC----CcEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA----DCFIA  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d----g~~l~  414 (540)
                      ...+++.|+|+ |+++ ..+|.|++++ .+++  ..+..-.         ...........|+++|    +    +...+
T Consensus        31 P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~--~~~~~~~---------v~~~g~~g~~gia~~p----df~~~g~lyv   92 (354)
T 3a9g_A           31 PWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK--KLVASFD---------VANVGEAGLLGLALHP----EFPKKSWVYL   92 (354)
T ss_dssp             EEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE--EEEEECC---------CCCSTTCSEEEEEECT----TTTTSCEEEE
T ss_pred             CeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc--eEeeccc---------eeecCCCceeeEEeCC----CCCcCCEEEE
Confidence            45678899998 5555 4569999887 3455  2221000         0012245688999999    6    44444


Q ss_pred             EEeC---C----CcEEEEEcCCCcccccCCCCCCcc-eEEecc-CCCCEEEEEEcCCCCEEEEEeCC-------------
Q psy1242         415 SGSA---D----CTVLLWHWNARTQSIVGETDTPTP-RATLTG-HEQPVTSVAISAELGLVVSGSQL-------------  472 (540)
Q Consensus       415 sgs~---D----gtV~lWd~~~~~~~~~~~~~~~~~-~~~l~~-h~~~V~~v~~spdg~~lasgs~D-------------  472 (540)
                      +-+.   +    ..|..++........ .   ..+. +..+.. .......++|.|||.+.++.+..             
T Consensus        93 ~~~~~~~~~~~~~~v~r~~~~~~~~~~-~---~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~  168 (354)
T 3a9g_A           93 YASYFAEGGHIRNRVIRGRLDGSTFKL-K---EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLA  168 (354)
T ss_dssp             EEEEECGGGCEEEEEEEEEECSSSCCE-E---EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCS
T ss_pred             EEeccCCCCCcceEEEEEEECCCCcCc-C---ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCC
Confidence            4332   3    456666654321000 0   0011 111221 11123568999999877764321             


Q ss_pred             CcEEEEeCCCc----------EEEEecCCCCCCCceEEEEee-CCCEEEE
Q psy1242         473 GPVLVHTTFGD----------LLRSLDPPSGFASPESVVMSR-EGVIVVN  511 (540)
Q Consensus       473 g~v~iw~~~g~----------~~~~l~~~~~~~~v~~l~fsp-dg~~l~s  511 (540)
                      |.|.-.+.+|+          .+.. .++.   .+..++|+| +|.+.++
T Consensus       169 G~I~ri~~dG~~p~~npf~~~~i~a-~G~r---np~Gla~d~~~g~l~v~  214 (354)
T 3a9g_A          169 GKILRVDEEGRPPADNPFPNSPIWS-YGHR---NPQGIDWHRASGVMVAT  214 (354)
T ss_dssp             SEEEEECTTSCCCTTSSSTTCCEEE-ECCS---CCCEEEECTTTCCEEEE
T ss_pred             eEEEEEcCCCCCCCCCCCCCCcEEE-EccC---CcceEEEeCCCCCEEEE
Confidence            33433333443          1111 1222   357899999 6776665

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=91.65  E-value=2  Score=46.15  Aligned_cols=47  Identities=26%  Similarity=0.295  Sum_probs=34.0

Q ss_pred             CCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEE
Q psy1242         462 ELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIV  509 (540)
Q Consensus       462 dg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l  509 (540)
                      .+.+++.++.||.++.++. +|+.+.+++.+.+. ...-+.+..+|+..
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQY  530 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc-EeccEEEEeCCEEE
Confidence            5677888999999998875 99999888766542 12335667788743

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.27  E-value=2.7  Score=41.77  Aligned_cols=108  Identities=10%  Similarity=0.021  Sum_probs=58.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCC---CcEE-E
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITA---DCFI-A  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~d---g~~l-~  414 (540)
                      ...+++.|+|+ ++++ ..+|.|++++  +++.. .+..-.         ...........|+++|    +   +..| +
T Consensus        33 P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~-~~~~~~---------v~~~g~~~p~gia~~p----df~~~g~lYv   94 (352)
T 2ism_A           33 PWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLS-TYAELS---------VYHRGESGLLGLALHP----RFPQEPYVYA   94 (352)
T ss_dssp             EEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEE-EEEECC---------CCCSTTCSEEEEEECT----TTTTSCEEEE
T ss_pred             ceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCcc-Eeecce---------EeecCCCCceeEEECC----CCCCCCEEEE
Confidence            45778899998 4555 4569999988  45422 220000         0012245688999999    7   3444 4


Q ss_pred             EEeCC-----CcEEEEEcCCCcccccCCCCCCc-ceEEec---cCCCCEEEEEEcCCCCEEEEEe
Q psy1242         415 SGSAD-----CTVLLWHWNARTQSIVGETDTPT-PRATLT---GHEQPVTSVAISAELGLVVSGS  470 (540)
Q Consensus       415 sgs~D-----gtV~lWd~~~~~~~~~~~~~~~~-~~~~l~---~h~~~V~~v~~spdg~~lasgs  470 (540)
                      +-...     ..|..++.......      ..+ .+..+.   +.......++|.|||.+.++.+
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~------~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           95 YRTVAEGGLRNQVVRLRHLGERGV------LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECTTSSEEEEEEEEECSSCEE------EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEecCCCCCccEEEEEEeCCCCcC------ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            43332     56777776531100      001 112232   1111235799999998766643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=91.00  E-value=2.4  Score=45.94  Aligned_cols=112  Identities=10%  Similarity=0.020  Sum_probs=66.3

Q ss_pred             EEEEec-CCCEEEEEEecCC-----------cEEEEEccCCeEEE--EEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         341 CFVTTV-DSRFLLACGFWDN-----------SFRVFSTDNARIVQ--IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       341 ~~~~sp-dg~~llasgs~Dg-----------sv~iwd~~~g~~~~--~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                      ..++.+ +|+ |++.|+.++           .+.+||..+++...  .+.              ..+.....++++..  
T Consensus       190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--------------~~~~~~~~~~~~~~--  252 (656)
T 1k3i_A          190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--------------TKHDMFCPGISMDG--  252 (656)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE--------------CSCCCSSCEEEECT--
T ss_pred             eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC--------------CCCCCccccccCCC--
Confidence            345567 666 677776543           57889988775322  120              12333344566667  


Q ss_pred             cCCCcEEEEEeC-CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe-CC-----CcEEEEe
Q psy1242         407 ITADCFIASGSA-DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS-QL-----GPVLVHT  479 (540)
Q Consensus       407 ~~dg~~l~sgs~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs-~D-----g~v~iw~  479 (540)
                        +|+.++.|+. +..+.+||..+.+...+         ..+..... -.+++..+++++++.|+ .+     ..+.+|+
T Consensus       253 --~g~lyv~GG~~~~~v~~yd~~t~~W~~~---------~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          253 --NGQIVVTGGNDAKKTSLYDSSSDSWIPG---------PDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             --TSCEEEECSSSTTCEEEEEGGGTEEEEC---------CCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             --CCCEEEeCCCCCCceEEecCcCCceeEC---------CCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeC
Confidence              8999999984 56899999876433211         11111111 12345567899999888 44     3577777


Q ss_pred             CC
Q psy1242         480 TF  481 (540)
Q Consensus       480 ~~  481 (540)
                      ..
T Consensus       321 ~~  322 (656)
T 1k3i_A          321 PS  322 (656)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.92  E-value=4.9  Score=39.90  Aligned_cols=115  Identities=12%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCC----CCEE
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAE----LGLV  466 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spd----g~~l  466 (540)
                      -.....|+|.|    +|++++ +..++.|++++... .          +.+..+   .........|+++|+    +.+.
T Consensus        28 l~~P~~ia~~p----dG~l~V-~e~~g~I~~~d~~G-~----------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~ly   91 (354)
T 3a9g_A           28 LEVPWSIAPLG----GGRYLV-TERPGRLVLISPSG-K----------KLVASFDVANVGEAGLLGLALHPEFPKKSWVY   91 (354)
T ss_dssp             CSCEEEEEEEE----TTEEEE-EETTTEEEEECSSC-E----------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             CCCCeEEEEcC----CCeEEE-EeCCCEEEEEeCCC-c----------eEeeccceeecCCCceeeEEeCCCCCcCCEEE
Confidence            35577899999    897555 56679999886322 1          112211   122356889999997    4444


Q ss_pred             EEEeC---C----CcEEEEeCCCc---------EEEEecCCCCCCCceEEEEeeCCCEEEE-ec-------------CCe
Q psy1242         467 VSGSQ---L----GPVLVHTTFGD---------LLRSLDPPSGFASPESVVMSREGVIVVN-YE-------------RGH  516 (540)
Q Consensus       467 asgs~---D----g~v~iw~~~g~---------~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~-------------dg~  516 (540)
                      ++-+.   +    ..|..++.++.         ++..+.... ......++|.|||.+.++ ++             .|.
T Consensus        92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~  170 (354)
T 3a9g_A           92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGK  170 (354)
T ss_dssp             EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSE
T ss_pred             EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeE
Confidence            44442   2    34433433221         122233111 113468999999987776 32             146


Q ss_pred             EEEEecCCc
Q psy1242         517 IAAFTMNGN  525 (540)
Q Consensus       517 I~lw~~~g~  525 (540)
                      |.-++++|+
T Consensus       171 I~ri~~dG~  179 (354)
T 3a9g_A          171 ILRVDEEGR  179 (354)
T ss_dssp             EEEECTTSC
T ss_pred             EEEEcCCCC
Confidence            777777665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.19  E-value=7.2  Score=38.55  Aligned_cols=115  Identities=17%  Similarity=0.240  Sum_probs=65.6

Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe---ccCCCCEEEEEEcCC---CC-EE
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL---TGHEQPVTSVAISAE---LG-LV  466 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~~spd---g~-~l  466 (540)
                      -.....++|.|    +|+++++ ..++.|.+++ .. ..         +.+..+   .........|+++|+   +. +.
T Consensus        30 l~~P~~ia~~p----dG~l~V~-e~~g~I~~i~-~g-~~---------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY   93 (352)
T 2ism_A           30 LEVPWALAFLP----DGGMLIA-ERPGRIRLFR-EG-RL---------STYAELSVYHRGESGLLGLALHPRFPQEPYVY   93 (352)
T ss_dssp             CSCEEEEEECT----TSCEEEE-ETTTEEEEEE-TT-EE---------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             CCCceEEEEcC----CCeEEEE-eCCCeEEEEE-CC-Cc---------cEeecceEeecCCCCceeEEECCCCCCCCEEE
Confidence            34567899999    8985554 6679999998 32 11         112211   122456889999998   44 44


Q ss_pred             EEEeCC-----CcEEEEeCCC-c------EEEEecC-CCCCCCceEEEEeeCCCEEEE-ec-------------CCeEEE
Q psy1242         467 VSGSQL-----GPVLVHTTFG-D------LLRSLDP-PSGFASPESVVMSREGVIVVN-YE-------------RGHIAA  519 (540)
Q Consensus       467 asgs~D-----g~v~iw~~~g-~------~~~~l~~-~~~~~~v~~l~fspdg~~l~s-~~-------------dg~I~l  519 (540)
                      ++-+..     +.|..++.++ .      ++..+.. .........++|.|||.+.++ ++             .|.|.-
T Consensus        94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~r  173 (352)
T 2ism_A           94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILR  173 (352)
T ss_dssp             EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEE
T ss_pred             EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEE
Confidence            444432     3454443322 1      2222431 111113478999999987766 32             156777


Q ss_pred             EecCC
Q psy1242         520 FTMNG  524 (540)
Q Consensus       520 w~~~g  524 (540)
                      ++++|
T Consensus       174 i~~dG  178 (352)
T 2ism_A          174 LTPEG  178 (352)
T ss_dssp             ECTTS
T ss_pred             EcCCC
Confidence            77766

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.63  E-value=12  Score=37.08  Aligned_cols=155  Identities=10%  Similarity=0.057  Sum_probs=78.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-  417 (540)
                      ...+++.|||+ ++++-...|.|++++..+++..... .- ..       ......+....|+++|....++...++=+ 
T Consensus        34 P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~-~~-~~-------v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           34 PWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELG-EV-PG-------VSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEE-EC-TT-------CCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             ceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeec-cc-Cc-------eeecCCCCceeeEeccccccCCEEEEEEec
Confidence            35678899998 5666544899999987656542211 00 00       00233567889999981111244434322 


Q ss_pred             -CCCcEEEEEcCCCcc--cccCCCCCCcc-eEEec-cCCCCEEEEEEcCCCCEEEEEeC-------------CCcE-EEE
Q psy1242         418 -ADCTVLLWHWNARTQ--SIVGETDTPTP-RATLT-GHEQPVTSVAISAELGLVVSGSQ-------------LGPV-LVH  478 (540)
Q Consensus       418 -~DgtV~lWd~~~~~~--~~~~~~~~~~~-~~~l~-~h~~~V~~v~~spdg~~lasgs~-------------Dg~v-~iw  478 (540)
                       .+..|.-|.......  ..+.   ..+. +..+. +....-..|+|.|||.+.++.+.             -|.| ++ 
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~---~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi-  179 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLG---APDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM-  179 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBC---CCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE-
T ss_pred             CCCCEEEEEEeCCCCcccccCC---CcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE-
Confidence             344454455433110  0000   0111 11221 11112356899999987777542             2333 33 


Q ss_pred             eCCCc----------EEEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         479 TTFGD----------LLRSLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       479 ~~~g~----------~~~~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                      +.+|+          .+.. .++.   .+..++|.|+|.+.++
T Consensus       180 ~~dG~ip~~nPf~~~~i~a-~G~R---Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYS-YGHR---NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEE-BCCS---BCCEEEECTTCCEEEE
T ss_pred             eCCCCccCCCCCCCCeEEe-eCCC---CcceEEECCCCCEEEE
Confidence            22332          1111 1222   3578999999887665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=86.77  E-value=25  Score=34.48  Aligned_cols=166  Identities=10%  Similarity=0.017  Sum_probs=91.0

Q ss_pred             EEEEEE---ecCCCEEEEEEe-------------cCCcEEEEEcc---CCeEEEEEecccceeeeeeEEEeec-cCcceE
Q psy1242         339 HNCFVT---TVDSRFLLACGF-------------WDNSFRVFSTD---NARIVQIIFGHYGVVTSRIVQIIFG-HYGVVT  398 (540)
Q Consensus       339 ~~~~~~---spdg~~llasgs-------------~Dgsv~iwd~~---~g~~~~~l~~~~~~v~~~~~~~l~~-h~~~Vt  398 (540)
                      ...+.+   .|+++ |+++..             .++.|..+|+.   +++.+....-..  +... .+.+.+ -.....
T Consensus        65 ~sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~--~~~~-~~~~~g~~~~~~n  140 (334)
T 2p9w_A           65 MSGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEK--VQDE-FEKKAGKRPFGVV  140 (334)
T ss_dssp             EEEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHH--HHHH-HHHHHSSCCEEEE
T ss_pred             eeEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcc--cccc-ccccccccccCCc
Confidence            356666   46765 455432             26779999998   787765541000  0000 000000 112478


Q ss_pred             EEEeccCccCCCcEEEEEeCC-CcEEEEEcCCCcccccCCCCCCcceEEec------cCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         399 CLSRSECNITADCFIASGSAD-CTVLLWHWNARTQSIVGETDTPTPRATLT------GHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      .++..+    +|+.-++++.- +.|...+.+..            .+..+.      ......+.|+++|+|..|+....
T Consensus       141 DvavD~----~GnaYVt~s~~~~~I~rV~pdG~------------~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          141 QSAQDR----DGNSYVAFALGMPAIARVSADGK------------TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             EEEECT----TSCEEEEEEESSCEEEEECTTSC------------CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             eeEECC----CCCEEEeCCCCCCeEEEEeCCCC------------EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence            899999    89999988877 77665554331            112111      11223678999999998888766


Q ss_pred             CCcEEEEeCCCcEE--EEec--CCCC-CCCceEE-EEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242         472 LGPVLVHTTFGDLL--RSLD--PPSG-FASPESV-VMSREGVIVVNY--ERGHIAAFTMNG  524 (540)
Q Consensus       472 Dg~v~iw~~~g~~~--~~l~--~~~~-~~~v~~l-~fspdg~~l~s~--~dg~I~lw~~~g  524 (540)
                      +|.+.-++......  ..+.  +... ......| ..-.+|+.|+.+  ..+.+.+.+.+|
T Consensus       205 ~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          205 PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            88886655431111  1111  2111 0123443 444678875543  356677777766

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=86.03  E-value=6.3  Score=39.04  Aligned_cols=56  Identities=9%  Similarity=0.002  Sum_probs=31.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      ...+++.|+|++|+++ ...|.|++++.. ++....+..-. .       ......+....|+++|
T Consensus        20 P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~-~-------v~~~g~~g~~gia~~p   75 (353)
T 2g8s_A           20 PWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVP-D-------VWAHGQGGLLDVVLAP   75 (353)
T ss_dssp             EEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCC-C-------CCCSTTCSEEEEEECT
T ss_pred             cEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCc-c-------cccCCCCCceeEEECC
Confidence            4677889999843444 457899998853 44221110000 0       0012244678999998

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=85.66  E-value=4.1  Score=37.82  Aligned_cols=147  Identities=8%  Similarity=-0.027  Sum_probs=76.9

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEE------EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIV------QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~------~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      .+++++|+|. |.+.  .+|.+.-.+..+.+..      ..+ +.            .+..+ -.++.|.|    +|.+.
T Consensus        44 ~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I-G~------------~Gw~~-F~a~~fD~----~G~LY  102 (236)
T 1tl2_A           44 KFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAKKI-GN------------GGWNQ-FQFLFFDP----NGYLY  102 (236)
T ss_dssp             SEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCEEE-EC------------SCGGG-CSEEEECT----TSCEE
T ss_pred             eeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccccccEe-cc------------ccccc-ceEEEECC----CCCEE
Confidence            4789999998 5566  5777666555432111      111 00            02222 46889999    88777


Q ss_pred             EEEeCCCcEEEEEcCCCc-ccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcE-----EE
Q psy1242         414 ASGSADCTVLLWHWNART-QSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDL-----LR  486 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~-~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~-----~~  486 (540)
                      ++  .||.|.-++--+.. ...+.     .....-.+-=..+.+|.+.|+|.+.+..  |+.+.-+.. ++..     ..
T Consensus       103 av--~dG~iyr~~pP~~~~~~Wl~-----~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~  173 (236)
T 1tl2_A          103 AV--SKDKLYKASPPQSDTDNWIA-----RATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARA  173 (236)
T ss_dssp             EE--ETTEEEEESCCCSTTCCHHH-----HSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHC
T ss_pred             Ee--CCCEEEEeCCCcCCCCceec-----cccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccccc
Confidence            76  56888766632111 00000     0001111122467999999999877666  777543422 1110     01


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEEecCCeE
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVNYERGHI  517 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I  517 (540)
                      +.-++.++..-..+.|.++|.+.+.. ++.+
T Consensus       174 ~~~g~~g~~~yr~l~f~~~G~l~~v~-~g~~  203 (236)
T 1tl2_A          174 TKIGQGGWDTFKFLFFSSVGTLFGVQ-GGKF  203 (236)
T ss_dssp             EEEESSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred             ceeccCCcceEEEEEECCCCcEEEEe-CCeE
Confidence            11122222223456688888777666 5644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=85.65  E-value=26  Score=33.68  Aligned_cols=127  Identities=9%  Similarity=0.014  Sum_probs=66.5

Q ss_pred             EEEecCCCEEEEEEecC-------------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccC
Q psy1242         342 FVTTVDSRFLLACGFWD-------------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNIT  408 (540)
Q Consensus       342 ~~~spdg~~llasgs~D-------------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~  408 (540)
                      --++++|.+|..+...+             ..|+..+++.++.. .+               ..  ..  +..+++    
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l---------------~~--~~--~~~~s~----  113 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VL---------------DP--DP--CIYASL----  113 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EE---------------EC--SC--EEEEEE----
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Ee---------------ec--CC--ccEEEE----
Confidence            34588999887776544             35677777655432 22               11  11  235677    


Q ss_pred             CCcEEEEEe--CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCcEE
Q psy1242         409 ADCFIASGS--ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVHTTFGDLL  485 (540)
Q Consensus       409 dg~~l~sgs--~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~~g~~~  485 (540)
                      ++++|+-..  .++.-.|+.+...          +.....+..+..    .+++++++.|.-.+. ...|.+-..+|...
T Consensus       114 ~g~~Iy~~~~~~~~~~~Iy~~~~d----------Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~  179 (302)
T 3s25_A          114 IGNYIYYLHYDTQTATSLYRIRID----------GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE  179 (302)
T ss_dssp             ETTEEEEEEESSSSCEEEEEEETT----------SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred             eCCEEEEEeecCCCCceEEEEECC----------CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence            777887665  4555556555432          112334444432    345667777665554 34454444455444


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                      +.+..  +  . ....+.|+|.+|+-
T Consensus       180 ~~l~~--~--~-~~~~~~P~g~~iy~  200 (302)
T 3s25_A          180 ALFYD--C--N-CYKPVVLDDTNVYY  200 (302)
T ss_dssp             EEEEC--S--C-EEEEEEEETTEEEE
T ss_pred             EEEeC--C--C-ccceeeecCCEEEE
Confidence            44421  1  1 12345577776654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=85.12  E-value=62  Score=37.50  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=46.4

Q ss_pred             EEEEEEecC------CCEEEEEEec-CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         339 HNCFVTTVD------SRFLLACGFW-DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       339 ~~~~~~spd------g~~llasgs~-Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      +.|+++.+.      +. ++|.|.| |++++|+++.+.+.+....             +.+ .....++.+...  +...
T Consensus       556 vscl~i~~~~~~~~~s~-~~aVg~~~d~tv~I~sL~~l~~~~~~~-------------L~~-~~~p~si~l~~~--~~~~  618 (1158)
T 3ei3_A          556 VACLDITPLGDSNGLSP-LCAIGLWTDISARILKLPSFELLHKEM-------------LGG-EIIPRSILMTTF--ESSH  618 (1158)
T ss_dssp             EEEEECCCCSSSTTCCS-EEEEEETTTTEEEEEETTTCCEEEEEE-------------CCS-SCCEEEEEEEEE--TTEE
T ss_pred             eEEEEeecCCCCccccc-EEEEEECCCCEEEEEECCCCCeEEEEE-------------CCC-CCCCcEEEEEEe--CCCc
Confidence            678877754      34 5788998 9999999998766553321             111 123334443321  0345


Q ss_pred             EEEEEeCCCcEEEEEcCC
Q psy1242         412 FIASGSADCTVLLWHWNA  429 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~  429 (540)
                      +|..|-.||.+.-+.++.
T Consensus       619 ~L~igl~dG~l~~~~~d~  636 (1158)
T 3ei3_A          619 YLLCALGDGALFYFGLNI  636 (1158)
T ss_dssp             EEEEEETTSEEEEEEECT
T ss_pred             EEEEEeCCCeEEEEEEcC
Confidence            788888999887666654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=84.97  E-value=10  Score=37.51  Aligned_cols=122  Identities=14%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC----CCEEEEEe
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE----LGLVVSGS  470 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd----g~~lasgs  470 (540)
                      .....|+|.|    +|+.|+.+...|.|++++........+.    ..+ ............++++|+    +.+.++-+
T Consensus        18 ~~P~~i~~~p----dG~~l~V~e~~G~i~~~~~~g~~~~~~~----~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~   88 (353)
T 2g8s_A           18 DHPWALAFLP----DNHGMLITLRGGELRHWQAGKGLSAPLS----GVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYS   88 (353)
T ss_dssp             SSEEEEEECS----TTCCEEEEETTTEEEEEETTTEECCCCB----SCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CCcEEEEEcC----CCCEEEEEeCCceEEEEeCCCceeeEec----CCc-ccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence            4567999999    9983444567899999874321100000    000 111223456789999995    44444433


Q ss_pred             C---CC----cEEEEeCC---CcE--EEE-ecC-C---CCCCCceEEEEeeCCCEEEE-ec-------------CCeEEE
Q psy1242         471 Q---LG----PVLVHTTF---GDL--LRS-LDP-P---SGFASPESVVMSREGVIVVN-YE-------------RGHIAA  519 (540)
Q Consensus       471 ~---Dg----~v~iw~~~---g~~--~~~-l~~-~---~~~~~v~~l~fspdg~~l~s-~~-------------dg~I~l  519 (540)
                      .   ++    .|..+..+   +.+  ... +.. +   ........|+|.|||.+.++ |+             .|.|.-
T Consensus        89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~r  168 (353)
T 2g8s_A           89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVR  168 (353)
T ss_dssp             EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEE
T ss_pred             CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEE
Confidence            2   12    33223221   111  111 111 1   11112468999999976666 33             146777


Q ss_pred             EecCCc
Q psy1242         520 FTMNGN  525 (540)
Q Consensus       520 w~~~g~  525 (540)
                      ++++|+
T Consensus       169 i~~dG~  174 (353)
T 2g8s_A          169 LTDQGE  174 (353)
T ss_dssp             EETTSC
T ss_pred             ECCCCC
Confidence            777765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=84.87  E-value=30  Score=34.14  Aligned_cols=106  Identities=8%  Similarity=0.025  Sum_probs=60.3

Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe----ccCCCCEEEEEEcCC----C
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL----TGHEQPVTSVAISAE----L  463 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~~v~~spd----g  463 (540)
                      ..-.....|+|.|    +|..+++--..|.|++++......         ..+..+    .........|+++|+    +
T Consensus        29 ~gL~~P~~ia~~p----dG~llVter~~G~I~~v~~~~g~~---------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g   95 (347)
T 3das_A           29 TGLNSPWGLAPLP----GGDLLVSSRDEATITRVDAKTGRK---------TELGEVPGVSPSGEGGLLGIALSPDYASDH   95 (347)
T ss_dssp             CCCSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCE---------EEEEECTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred             cCCCCceEEEEcC----CCcEEEEEecCCEEEEEECCCCcE---------eeecccCceeecCCCCceeeEeccccccCC
Confidence            3455678999999    998777665589999887543211         112212    233567899999996    4


Q ss_pred             CEEEEEe--CCCcEEEEeCCC-----------cE-EEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         464 GLVVSGS--QLGPVLVHTTFG-----------DL-LRSLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       464 ~~lasgs--~Dg~v~iw~~~g-----------~~-~~~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                      .+.++-+  .++.|.-+..++           +. +..+... .......|+|.|||.+.++
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt  156 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKG-VIHNGGRIAFGPDKMLYAG  156 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCC-SSCCCCCEEECTTSCEEEE
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCC-CCccCccccCCCCCCEEEE
Confidence            4444332  233332232211           11 2233321 1112367999999987776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=83.74  E-value=33  Score=40.50  Aligned_cols=227  Identities=11%  Similarity=0.107  Sum_probs=114.6

Q ss_pred             cceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCcc---eeeEEEEEE
Q psy1242         273 QFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQK---LRVRHNCFV  343 (540)
Q Consensus       273 D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~---~~v~~~~~~  343 (540)
                      ..++++.|..+.....+..+.+.|.    ...|-.+.++...+.   ..+-.|.+.+      .|+.+   ....+....
T Consensus        85 g~~lQiFnl~~k~klks~~~~e~Vv----fWkWis~~~l~lVT~---~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~  157 (1630)
T 1xi4_A           85 GKTLQIFNIEMKSKMKAHTMTDDVT----FWKWISLNTVALVTD---NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYR  157 (1630)
T ss_pred             CCeEEEeehHHhhhhcccccCCCce----EEEecCCCeeEEEcC---CeEEEeccCCCCccHHHHhcchhcccCeeEEee
Confidence            5678888887765555555543331    233434444333321   0111111111      01111   123356667


Q ss_pred             EecCCCEEEEEEe------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeec--cCcceEEEEeccCccCCCcEEEE
Q psy1242         344 TTVDSRFLLACGF------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG--HYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       344 ~spdg~~llasgs------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~--h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      .+++.++++++|-      -.|.+.+|+++ .+..+.++||.+....   ..+.|  +...+.|.+.-.           
T Consensus       158 ~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~sQ~iegha~~F~~---~~~~~~~~~~~l~~f~~~~-----------  222 (1630)
T 1xi4_A          158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQ---FKMEGNAEESTLFCFAVRG-----------  222 (1630)
T ss_pred             eCCCCCeEEEEeeccCCCcccceeeeeecc-cccchhhhHhHhhhhe---eccCCCCCCceEEEEEEec-----------
Confidence            7899999877764      34778888887 3444556444432210   00011  112233332221           


Q ss_pred             EeCCCcEEEEEcCCC-cccccCCCCCCcceEEecc---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecC
Q psy1242         416 GSADCTVLLWHWNAR-TQSIVGETDTPTPRATLTG---HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDP  490 (540)
Q Consensus       416 gs~DgtV~lWd~~~~-~~~~~~~~~~~~~~~~l~~---h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~  490 (540)
                       ...+.+.|-++... .+..   +...+.+..+..   -.+--.++.+|+....+..-+.-|.+.+++. +|.++..-+.
T Consensus       223 -~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          223 -QAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (1630)
T ss_pred             -CCCceEEEEecCCCccCCC---CCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence             01257888887543 1110   011111111211   1233446788888888888999999999865 8887755544


Q ss_pred             CCCCCCceEEEE-eeCCCEEEEecCCeEEEEecCCcEE
Q psy1242         491 PSGFASPESVVM-SREGVIVVNYERGHIAAFTMNGNRL  527 (540)
Q Consensus       491 ~~~~~~v~~l~f-spdg~~l~s~~dg~I~lw~~~g~~l  527 (540)
                      ...  +|-..+- .+.|.+++....|.|.--+++...+
T Consensus       299 s~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          299 SGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             cCC--ceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            443  3333332 2345666666677777777764433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=83.18  E-value=22  Score=34.25  Aligned_cols=142  Identities=8%  Similarity=0.025  Sum_probs=77.4

Q ss_pred             EEecCCCEEEEEE-ecCC--cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242         343 VTTVDSRFLLACG-FWDN--SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-  418 (540)
Q Consensus       343 ~~spdg~~llasg-s~Dg--sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-  418 (540)
                      ++++++++|..+- +.++  .|...+++ |...+.+               ..+..    .++++    +++.|.-.+. 
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~l---------------t~~~~----~~~~~----~g~~iy~t~~g  165 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKI---------------KNHYL----FTCNT----SDRYFYYNNPK  165 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEE---------------ESSCC----CCSEE----ETTEEEEECTT
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEE---------------eCCCc----eEeeE----ECCEEEEEeCC
Confidence            5678999865554 1334  45555555 3333444               23322    45677    7777776654 


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCcEEEEecCCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG--PVLVHTTFGDLLRSLDPPSGFAS  496 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg--~v~iw~~~g~~~~~l~~~~~~~~  496 (540)
                      ...|.+-++....            ...+..  +... ..++|+++.|+-...++  .|..=..+|.....|..  .  .
T Consensus       166 ~~~Iy~~~l~g~~------------~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~--~  226 (302)
T 3s25_A          166 NGQLYRYDTASQS------------EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE--A--N  226 (302)
T ss_dssp             TCCEEEEETTTTE------------EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC--S--C
T ss_pred             CceEEEEECCCCC------------EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC--C--C
Confidence            5666666655422            122222  1222 34568888887666443  33222445555555542  2  2


Q ss_pred             ceEEEEeeCCCEEEEec---CCeEEEEecCCcEEEe
Q psy1242         497 PESVVMSREGVIVVNYE---RGHIAAFTMNGNRLRH  529 (540)
Q Consensus       497 v~~l~fspdg~~l~s~~---dg~I~lw~~~g~~l~~  529 (540)
                      +  ..|+|+|..|..+.   .+.|..-+++|.....
T Consensus       227 ~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~  260 (302)
T 3s25_A          227 I--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKE  260 (302)
T ss_dssp             E--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEE
T ss_pred             c--ceEEECCCEEEEEECCCCcEEEEEECCCCccEE
Confidence            2  45888999887542   3567777888754333

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=83.03  E-value=22  Score=36.52  Aligned_cols=104  Identities=10%  Similarity=0.012  Sum_probs=56.4

Q ss_pred             CcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec------cCCCCEEEEEEcCC----C
Q psy1242         394 YGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT------GHEQPVTSVAISAE----L  463 (540)
Q Consensus       394 ~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~~spd----g  463 (540)
                      ......|+|.|    +|+++++-...+.|++++......         ..+..+.      .....+..|+|+|+    +
T Consensus        26 l~~P~~~a~~p----dG~l~V~e~~gg~I~~~~~~~g~~---------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g   92 (454)
T 1cru_A           26 LNKPHALLWGP----DNQIWLTERATGKILRVNPESGSV---------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP   92 (454)
T ss_dssp             CSSEEEEEECT----TSCEEEEETTTCEEEEECTTTCCE---------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred             CCCceEEEEcC----CCcEEEEEcCCCEEEEEECCCCcE---------eEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence            44567999999    998777654445788876432211         1122221      12456789999995    4


Q ss_pred             CEEEEEeC------C------CcE-EEE-eC-CCc-----E-EEEecCCCCCCCceEEEEeeCCCEEEE
Q psy1242         464 GLVVSGSQ------L------GPV-LVH-TT-FGD-----L-LRSLDPPSGFASPESVVMSREGVIVVN  511 (540)
Q Consensus       464 ~~lasgs~------D------g~v-~iw-~~-~g~-----~-~~~l~~~~~~~~v~~l~fspdg~~l~s  511 (540)
                      .+.++-+.      +      ..| ++- +. .+.     . +..+... .......|+|.|||.+.++
T Consensus        93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~  160 (454)
T 1cru_A           93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYT  160 (454)
T ss_dssp             EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEE
T ss_pred             EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEE
Confidence            44444432      1      123 221 21 111     1 1223321 1124589999999997776

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=81.92  E-value=49  Score=33.91  Aligned_cols=166  Identities=11%  Similarity=0.094  Sum_probs=96.1

Q ss_pred             EEEEEEEecCCCEEEEEEe------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         338 RHNCFVTTVDSRFLLACGF------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      .+.....+++.++++.+|-      -.|.+.+|+.+ .+..+.++||.               ..-..+...-. .....
T Consensus       152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGha---------------a~F~~~~~~g~-~~~~~  214 (494)
T 1bpo_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHA---------------ASFAQFKMEGN-AEEST  214 (494)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSE---------------EEEEEEECTTC-SSEEE
T ss_pred             eEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccchheeee---------------eeeEEEecCCC-CCCce
Confidence            4667777899999877764      34677888887 44556664444               33322222110 00012


Q ss_pred             EEEEEeC---CCcEEEEEcCCC-cccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc
Q psy1242         412 FIASGSA---DCTVLLWHWNAR-TQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD  483 (540)
Q Consensus       412 ~l~sgs~---DgtV~lWd~~~~-~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~  483 (540)
                      .++.+..   .+.+.|-++... .+..   +...+.+..+.   .-.+--.++.+|+....+..-++-|.+.+++. +|.
T Consensus       215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~---~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             EEEEEECSTTCCEEEEEECSCCCTTCC---CCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEEecCCCcEEEEEEcCCCccCCC---CccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence            2333333   268888887543 1110   01111111121   12344567889999999999999999999876 899


Q ss_pred             EEEEecCCCCCCCceEEEEe-eCCCEEEEecCCeEEEEecCCc
Q psy1242         484 LLRSLDPPSGFASPESVVMS-REGVIVVNYERGHIAAFTMNGN  525 (540)
Q Consensus       484 ~~~~l~~~~~~~~v~~l~fs-pdg~~l~s~~dg~I~lw~~~g~  525 (540)
                      ++..-+-..+  +|-..+-. ..|.+++...+|.|..-+++..
T Consensus       292 ~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          292 CIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             eeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            8877665555  44443333 3455666667777777776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	540
d1t77a1	304	a.169.1.1 (A:2186-2489) Lipopolysaccharide-respons	7e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001

>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 304

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (329), Expect = 7e-35
 Identities = 64/97 (65%), Positives = 78/97 (80%)

Query: 15  FFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMA 74
           F Y + +  I GR+YNDLNQYPVFPWV+TNY+S+ELDL+L TN+RDLSKPIGALNP R A
Sbjct: 38  FEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAA 97

Query: 75  YFEERYNSWEHENIKPFHYGTHYSTGVYVLNWLVRVP 111
           +F ERY SWE + +  FHYGTHYST  +VL WL+R+ 
Sbjct: 98  FFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIE 134

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (132), Expect = 6e-09
 Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 36/145 (24%)

Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------RIVQIIF 391
           L   G  D S +++        Q   GH   + +                   R+  +  
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

Query: 392 GHYGVVTCLSRSECNITADCF------IASGSADCTVLLWHWNARTQSIVGETDTPTPRA 445
               +        C IT+  F      + +G  D    +W                    
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA-----------LKADRAG 306

Query: 446 TLTGHEQPVTSVAISAELGLVVSGS 470
            L GH+  V+ + ++ +   V +GS
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGS 331

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 19/76 (25%)

Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
           LL  G+ D +  V+    A    ++ GH   V+     +     G               
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC----LGVTDDG--------------- 324

Query: 411 CFIASGSADCTVLLWH 426
             +A+GS D  + +W+
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 11/74 (14%)

Query: 405 CNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG 464
                     SG+ D +  LW                  R T TGHE  + ++       
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVR-----------EGMCRQTFTGHESDINAICFFPNGN 239

Query: 465 LVVSGSQLGPVLVH 478
              +GS      + 
Sbjct: 240 AFATGSDDATCRLF 253

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 15/162 (9%)

Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
           L+A    D + RV+          +  H  VV          +  +              
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216

Query: 411 -CFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG 469
             F+ SGS D T+ +W  +           T     TL GH+  V  V   +    ++S 
Sbjct: 217 GPFLLSGSRDKTIKMWDVS-----------TGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265

Query: 470 SQLGPVLV-HTTFGDLLRSLDPPSGFASPESVVMSREGVIVV 510
           +    + V        +++L+    F +  S+   +    VV
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVT--SLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 8e-08
 Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 20/147 (13%)

Query: 324 KRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT 383
           + H             +    +  +            F +  + +  I       + V T
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK-----MWDVST 236

Query: 384 SRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTP 443
              +  + GH   V  +           FI S + D T+ +W +                
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGG----KFILSCADDKTLRVWDY-----------KNKRC 281

Query: 444 RATLTGHEQPVTSVAISAELGLVVSGS 470
             TL  HE  VTS+        VV+GS
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGS 308

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 238 CMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPG 297
            + +  P+       + +   T+ +  V T     +   +R   +  +     SY+    
Sbjct: 145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 204

Query: 298 SPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV----DSRFLLA 353
           +       +  P     + + +  +    +         V H+ +V  V      +F+L+
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 264

Query: 354 CGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI 413
           C   D + RV+   N R ++ +  H   VTS    + F                    ++
Sbjct: 265 CA-DDKTLRVWDYKNKRCMKTLNAHEHFVTS----LDFHKTA---------------PYV 304

Query: 414 ASGSADCTVLLW 425
            +GS D TV +W
Sbjct: 305 VTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 440 TPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLV-HTTFGDLLRSLDPPSG 493
            P  +  L+GH  PVT V       ++VS S+   + V     GD  R+L   + 
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 27/215 (12%), Positives = 49/215 (22%), Gaps = 16/215 (7%)

Query: 339 HNCFVTTVD---SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYG 395
           H   VT V       ++     D + +V+  +     + + GH   V             
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQS------------IVGETDTPTP 443
             +     +                   +   +                  + E  T   
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135

Query: 444 RATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFG-DLLRSLDPPSGFASPESVVM 502
             T TGH + V  V  + +  L+ S S    V V      +    L          S   
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 503 SREGVIVVNYERGHIAAFTMNGNRLRHESHNDNLQ 537
                 +              G  L   S +  ++
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 48/297 (16%), Positives = 89/297 (29%), Gaps = 35/297 (11%)

Query: 181 RDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMM-FSTVLDDVCM 239
           +D     +  S + D+ + S+ +  D  + A            I +  +       +  +
Sbjct: 107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166

Query: 240 SLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSP 299
                  S    V+ +   T+ +  + T   +   +I       A S     Y       
Sbjct: 167 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL- 225

Query: 300 PGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDN 359
                   D  +    S     V +    +      +      V T D + +++    D 
Sbjct: 226 --------DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDR 276

Query: 360 SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD 419
           S ++++  NA             +        GH   V  ++ ++     D +I SGS D
Sbjct: 277 SVKLWNLQNANNKSDSKTPN---SGTCEVTYIGHKDFVLSVATTQN----DEYILSGSKD 329

Query: 420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAI------SAELGLVVSGS 470
             VL W              +  P   L GH   V SVA+        E  +  +GS
Sbjct: 330 RGVLFWD-----------KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 13/77 (16%)

Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
            +  G  D     +   +   + ++ GH   V S               ++         
Sbjct: 322 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS-------------VAVANGSSLGPEY 368

Query: 411 CFIASGSADCTVLLWHW 427
              A+GS DC   +W +
Sbjct: 369 NVFATGSGDCKARIWKY 385

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 13/82 (15%)

Query: 397 VTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTS 456
           ++C + ++        IA    +  V ++             +       L  H   VT 
Sbjct: 10  ISCHAWNKDR----TQIAICPNNHEVHIYEK---------SGNKWVQVHELKEHNGQVTG 56

Query: 457 VAISAELGLVVSGSQLGPVLVH 478
           V  + +   +V+        V 
Sbjct: 57  VDWAPDSNRIVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 17/78 (21%)

Query: 351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD 410
            +A    ++   ++     + VQ+               +  H G VT +  +  +    
Sbjct: 21  QIAICPNNHEVHIYEKSGNKWVQV-------------HELKEHNGQVTGVDWAPDS---- 63

Query: 411 CFIASGSADCTVLLWHWN 428
             I +   D    +W   
Sbjct: 64  NRIVTCGTDRNAYVWTLK 81

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 19/80 (23%)

Query: 392 GHYG-VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
           GH   V+TCL         D ++ +G+ D  + ++           ++        L+GH
Sbjct: 10  GHMTSVITCLQFE------DNYVITGADDKMIRVY-----------DSINKKFLLQLSGH 52

Query: 451 EQPVTSVAISAELGLVVSGS 470
           +  V ++  +   G++VSGS
Sbjct: 53  DGGVWALKYAHG-GILVSGS 71

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 18/243 (7%), Positives = 47/243 (19%), Gaps = 16/243 (6%)

Query: 236 DVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAET 295
            +      P +          +     P  V V   H  ++   +      +        
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183

Query: 296 PGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACG 355
                  +              +     +R    + S    +R            L    
Sbjct: 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT 243

Query: 356 FWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS 415
                 R+                        +  + H  +    +           I  
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFY-----VSDNILV 298

Query: 416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPV 475
             ++    +++  +               A +      + SV    +  LV +  + G  
Sbjct: 299 SGSENQFNIYNLRSGKL----------VHANILKDADQIWSVNFKGK-TLVAAVEKDGQS 347

Query: 476 LVH 478
            + 
Sbjct: 348 FLE 350

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 18/79 (22%)

Query: 383 TSRIVQIIFGHYG-VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTP 441
             +  +++ GH   V+TCL            I SGS D T+ +W              T 
Sbjct: 5   ELKSPKVLKGHDDHVITCLQFC------GNRIVSGSDDNTLKVWSAV-----------TG 47

Query: 442 TPRATLTGHEQPVTSVAIS 460
               TL GH   V S  + 
Sbjct: 48  KCLRTLVGHTGGVWSSQMR 66

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 25/140 (17%)

Query: 331 FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQII 390
           F + L               L+  G  DN+ R++  +    ++++ GH  +V        
Sbjct: 170 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR------- 222

Query: 391 FGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGH 450
                         C    +  I SG+ D  + +W  +                 TL  H
Sbjct: 223 --------------CIRFDNKRIVSGAYDGKIKVW--DLVAALDPRAPAGTLCLRTLVEH 266

Query: 451 EQPVTSVAISAELGLVVSGS 470
              V  +        +VS S
Sbjct: 267 SGRVFRLQFDE--FQIVSSS 284

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 9e-04
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 12/87 (13%)

Query: 339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT 398
                        +  G +D   +V+    A   +   G         ++ +  H G V 
Sbjct: 218 EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT------LCLRTLVEHSGRVF 271

Query: 399 CLSRSECNITADCFIASGSADCTVLLW 425
            L         +  I S S D T+L+W
Sbjct: 272 RLQFD------EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 17/65 (26%)

Query: 392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE 451
                V CL         D  I SG  D T+ +W  N           T   +  LTGH 
Sbjct: 13  ETSKGVYCLQYD------DQKIVSGLRDNTIKIWDKN-----------TLECKRILTGHT 55

Query: 452 QPVTS 456
             V  
Sbjct: 56  GSVLC 60

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 8/83 (9%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
           +IVQI       ++ +            +   S D ++ ++ ++ + +++          
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSK----SLLLITSWDGSLTVYKFDIQAKNV--------DL 49

Query: 445 ATLTGHEQPVTSVAISAELGLVV 467
                ++ P+          L +
Sbjct: 50  LQSLRYKHPLLCCNFIDNTDLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 25/282 (8%), Positives = 61/282 (21%), Gaps = 20/282 (7%)

Query: 189 VRSYAYDITVLSLRWIVDSCWRAVSGITASECSLRIMSPMMFSTVLDDVCMSLKFPSNSP 248
           ++S  Y   +L   +I ++  +   G    E     +        L +   +L       
Sbjct: 50  LQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK 109

Query: 249 ICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLD 308
                        +  V+         I   N +   +           +    +    +
Sbjct: 110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169

Query: 309 PILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDN 368
             +                          +          +   AC   D    V   D+
Sbjct: 170 SQVQWFRLPLCEDDNGTIEESGLKY----QIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225

Query: 369 ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWN 428
                     +     R+          V  +  S  +     F+ +  +D  +  W+  
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH----KFLYTAGSDGIISCWNLQ 281

Query: 429 ARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS 470
            R +                      + V I+    ++   +
Sbjct: 282 TRKK-----------IKNFAKFN-EDSVVKIACSDNILCLAT 311

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 14/75 (18%)

Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
            I Q+ +GH   +T LS S         + S  A+  +  W  +               R
Sbjct: 3   SIDQVRYGHNKAITALSSSADG----KTLFSADAEGHINSWDISTGIS----------NR 48

Query: 445 ATLTGHEQPVTSVAI 459
                H   +T +  
Sbjct: 49  VFPDVHATMITGIKT 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 24/76 (31%)

Query: 385 RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPR 444
            +++ I GH   +T L+ +         + SGS D  ++ W  +                
Sbjct: 4   EVLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSS---------------- 39

Query: 445 ATLTGHEQPVTSVAIS 460
           +    H   + S+  S
Sbjct: 40  SMHQDHSNLIVSLDNS 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	540
d1t77a1	304	Lipopolysaccharide-responsive and beige-like ancho	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.92
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.91
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.89
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.86
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.83
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.8
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.79
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.77
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.77
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.7
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.68
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.66
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.65
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.6
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.54
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.54
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.48
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.48
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.42
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.41
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.31
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.3
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.28
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.18
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.14
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.11
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.83
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.77
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.66
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.39
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.37
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.29
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.21
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.21
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.15
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.08
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.99
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.96
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.95
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.88
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.62
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.61
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.57
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.33
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.04
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.94
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.91
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.89
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.7
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.69
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.51
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.63
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.7
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	89.94
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.6
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	87.45
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.96
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	84.26
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	84.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	82.84

>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-66  Score=502.43  Aligned_cols=214  Identities=37%  Similarity=0.604  Sum_probs=183.6

Q ss_pred             CcccccccCCCCCchHHHHHhhhhcCCCCCCCCCCcccceeeccCCCCccCCCCccccccccCcccccChhhHHHHHHHH
Q psy1242           1 RTYNDLNQYPVFPEFFYFIVICLITGRTYNDLNQYPVFPWVLTNYDSKELDLSLSTNYRDLSKPIGALNPSRMAYFEERY   80 (540)
Q Consensus         1 ~~~~~~w~~~~~sn~~yl~~ln~~~grs~~d~~~ypv~pwv~~~~~~~~~~~~~~~~~rdl~~~~~~~~~~~~~~~~~~~   80 (540)
                      +++|+||++|+||||||||+||.+|||||||++|||||||||+||+|+++||+|++.||||+||||++|++|++.+++||
T Consensus        24 ~~~t~kW~~g~iSNfeYLm~LN~~sGRSf~D~~qYPIfPWVi~dy~s~~ldl~~~~~~RDLskpig~l~~~r~~~~~~~~  103 (304)
T d1t77a1          24 SNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERY  103 (304)
T ss_dssp             CSHHHHHHTTSSCHHHHHHHHHHHHTCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCCcHHHHHHHHHHHhCCCCCCcccCcccCeeeccCCcccccccCccccccCCCchhccCHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCCceeccCCCChhHhhheeeeee-c---------CCcC-CCC--ccccccccC-------------------
Q psy1242          81 NSWEHENIKPFHYGTHYSTGVYVLNWLVRVP-I---------GALN-PSP--SIQSPSYAE-------------------  128 (540)
Q Consensus        81 ~~~~~~~~~~~~~~~~~s~~~~v~~~~~r~~-~---------~~~d-~~r--~s~~~~~~~-------------------  128 (540)
                      +++.+.+.++||||+|||++++|++||+|+| |         |+|| ++|  .||+++|++                   
T Consensus       104 ~~~~~~~~~~~~y~s~yS~~~~V~~~L~R~ePft~l~~~lq~g~fD~~~R~F~si~~~~~~~~~~~~d~~EliPEFf~~P  183 (304)
T d1t77a1         104 ESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLP  183 (304)
T ss_dssp             HHCCCSSSCCCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHHHCTTCCCCBCGGGGTCG
T ss_pred             HhcccCCCCCcccCCCCCChhHHHHHHhcCCchhHHHHHhhcCcccCCccccccHHHHHHHhcccccchhhcCchhhcCh
Confidence            9998888999999999999999999999999 8         8999 999  999999964                   


Q ss_pred             --------------CCCCCCCCCceecCCccCCcCccCCCccchhhhcCC-------------Cccc------cCCCCCC
Q psy1242         129 --------------TPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-------------FSQK------LRVRPIT  175 (540)
Q Consensus       129 --------------~~~~~~~~~~v~lp~w~~~~~~f~~~~~~r~~Le~~-------------fg~~------~~~~~~~  175 (540)
                                    ++|+.++|  |+||+||++|++||  ++||+||||+             ||+|      ++..|++
T Consensus       184 e~f~n~n~~~~g~~~~g~~v~D--V~LP~Wa~s~~~FV--~~~R~aLES~~VS~~L~~WIDLiFG~kq~G~~A~~a~Nvf  259 (304)
T d1t77a1         184 EMFVNFNNYNLGVMDDGTVVSD--VELPPWAKTSEEFV--HINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVF  259 (304)
T ss_dssp             GGGSCTTCCCCCBCTTSCBCSS--CBCCTTCSSHHHHH--HHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCB
T ss_pred             HhhhhccccccccccCCCcccc--cccCCccCCcHHHH--HHHHHHHhchHHHhHhhhhHHhhhccccCCHHHHHhcccc
Confidence                          46788999  99999999999999  9999999998             7776      3445566


Q ss_pred             CCCCcchhhhhhhhcccccchhhhhhhhhhccccccccccccCcc-cccccC
Q psy1242         176 TPLYPRDIWVTISVRSYAYDITVLSLRWIVDSCWRAVSGITASEC-SLRIMS  226 (540)
Q Consensus       176 ~~~~~~~a~~~~~i~~~~y~~~~~~l~~~~~~~~~~~fGQ~P~Q~-~~~~~~  226 (540)
                      .|..|...|....+..        +.+...-+++.++|||+|.|| ..|||.
T Consensus       260 ~p~~Y~~~~~~~~~~d--------~~~~~~~~~~~~~~Gq~P~QLF~~pHP~  303 (304)
T d1t77a1         260 YYLTYEGAVNLNSITD--------PVLREAVEAQIRSFGQTPSQLLIEPHPP  303 (304)
T ss_dssp             CGGGSTTSCCGGGCCS--------HHHHHHHHHHHHHHCCCCCCCCSSCCCC
T ss_pred             ccccccccccccccCC--------HHHHHHHHHHHHHCCCCchhhcCCCCCC
Confidence            6665444432222111        122233345567899999998 466654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=9.4e-26  Score=224.68  Aligned_cols=244  Identities=12%  Similarity=0.099  Sum_probs=176.2

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcc---cCCCCcCCCCCCCCCccccCCCCeeeccCCCCC-Cccccc
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASI---QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNA-PVPKRH  326 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~---~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~-~~~~~~  326 (540)
                      |...++.+.+.+++..+||++.|++|++|+.......   ....|.+.|    ..+.|++|+..+++++.... ....+.
T Consensus        57 H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v----~~v~~s~d~~~l~~~~~~~~~~~~v~~  132 (311)
T d1nr0a1          57 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV----KDISWDSESKRIAAVGEGRERFGHVFL  132 (311)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE----EEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             CCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcc----ccccccccccccccccccccccccccc
Confidence            3444555556666666999999999999998775532   123455333    35789999976665543221 111111


Q ss_pred             cC-----CCcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEE
Q psy1242         327 LG-----DNFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLS  401 (540)
Q Consensus       327 ~~-----~~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~  401 (540)
                      +.     ..+.. ..-.+.+++|+|+++++|++|+.|+.|++||+++++....+               .+|...|++++
T Consensus       133 ~~~~~~~~~l~~-h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~---------------~~~~~~i~~v~  196 (311)
T d1nr0a1         133 FDTGTSNGNLTG-QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF---------------GEHTKFVHSVR  196 (311)
T ss_dssp             TTTCCBCBCCCC-CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE---------------CCCSSCEEEEE
T ss_pred             cccccccccccc-cccccccccccccceeeeccccccccccccccccccccccc---------------ccccccccccc
Confidence            11     11111 11236788889999987899999999999999999988887               78999999999


Q ss_pred             eccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-
Q psy1242         402 RSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-  480 (540)
Q Consensus       402 ~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-  480 (540)
                      |+|    ++++|++|+.|+.|++||..........+    .......+|...|++++|+|++++|++|+.||+|+||+. 
T Consensus       197 ~~p----~~~~l~~~~~d~~v~~~d~~~~~~~~~~~----~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         197 YNP----DGSLFASTGGDGTIVLYNGVDGTKTGVFE----DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             ECT----TSSEEEEEETTSCEEEEETTTCCEEEECB----CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCc----ccccccccccccccccccccccccccccc----ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            999    99999999999999999987643211000    011223579999999999999999999999999999975 


Q ss_pred             CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         481 FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       481 ~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      ++++++++..+... ....+++.+++..|++ +.||.|++||++
T Consensus       269 t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         269 TLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            89999999876541 2334555556666665 679999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2e-25  Score=217.13  Aligned_cols=254  Identities=14%  Similarity=0.162  Sum_probs=198.7

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccC-CCCcCCCCCCCCCccccCCCCe
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS-PSYAETPGSPPGNLPLTLDPIL  311 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~-~~~~~~v~~~~~~~~~s~D~~l  311 (540)
                      .|.+.+..+.|+++++.                 ++|||.|++|++||..++..... .+|.+.|    ..+.+++++.+
T Consensus        15 GH~~~I~~l~~sp~~~~-----------------l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V----~~~~~~~~~~~   73 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSV-----------------MVSASEDATIKVWDYETGDFERTLKGHTDSV----QDISFDHSGKL   73 (317)
T ss_dssp             CCSSCEEEEEECSSSSE-----------------EEEEESSSCEEEEETTTCCCCEEECCCSSCE----EEEEECTTSSE
T ss_pred             CCCCCeEEEEEcCCCCE-----------------EEEEeCCCeEEEEECCCCCEEEEEeCCCCcE----EEEeeeccccc
Confidence            45566666777666555                 99999999999999987664433 3455433    35678888877


Q ss_pred             eeccCCCCCCccccccCCC---cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEE
Q psy1242         312 THPTSNNNAPVPKRHLGDN---FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQ  388 (540)
Q Consensus       312 ~~~g~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~  388 (540)
                      ++++...............   ..........++.+++++.. +++++.|+.+++||+++++.+..+             
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------  139 (317)
T d1vyhc1          74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTF-------------  139 (317)
T ss_dssp             EEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEE-------------
T ss_pred             ccccccccccccccccccccccccccccccceeeeccCCCce-EEeeccCcceeEeecccceeeeEE-------------
Confidence            7765433222111111100   00111223677888999996 689999999999999999988888             


Q ss_pred             EeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC-----
Q psy1242         389 IIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL-----  463 (540)
Q Consensus       389 ~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg-----  463 (540)
                        .+|...+.+++|+|    ++.+|++|+.|+.|++|++..           .++...+.+|...+.+++++|++     
T Consensus       140 --~~~~~~~~~~~~~~----~~~~l~~~~~d~~v~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~  202 (317)
T d1vyhc1         140 --TGHREWVRMVRPNQ----DGTLIASCSNDQTVRVWVVAT-----------KECKAELREHRHVVECISWAPESSYSSI  202 (317)
T ss_dssp             --ECCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECCSCGGGGG
T ss_pred             --ccCCCcceeeeccc----CCCEEEEEeCCCeEEEEeecc-----------ceeeEEEecCCCCceEEEEeecccccee
Confidence              78999999999999    999999999999999999876           45778888999999999998754     


Q ss_pred             ---------------CEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-Cc
Q psy1242         464 ---------------GLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GN  525 (540)
Q Consensus       464 ---------------~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~  525 (540)
                                     ..+++++.||.|++|+. +++++.++.+|..  .|.+++|+|+|++|++ +.||.|++||+. ++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             GGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             eccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence                           46899999999999976 8899999999988  7899999999999987 568999999986 88


Q ss_pred             EEEeee-cCCcceecC
Q psy1242         526 RLRHES-HNDNLQKTA  540 (540)
Q Consensus       526 ~l~~~~-~~~~V~~va  540 (540)
                      .+..+. |.+.|++|+
T Consensus       281 ~~~~~~~h~~~V~~~~  296 (317)
T d1vyhc1         281 CMKTLNAHEHFVTSLD  296 (317)
T ss_dssp             CCEEEECCSSCEEEEE
T ss_pred             EEEEEcCCCCCEEEEE
Confidence            888886 899998874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.7e-25  Score=221.12  Aligned_cols=225  Identities=16%  Similarity=0.097  Sum_probs=171.0

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCcccCC-CCcCCCCCCCCCccccCCCCeeeccCCCCCCcc------------ccc
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQSP-SYAETPGSPPGNLPLTLDPILTHPTSNNNAPVP------------KRH  326 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~-~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~------------~~~  326 (540)
                      +.++...++|||.|++|++||..++...... .|...|    ..+.|++++.++++|+.+.....            ...
T Consensus        63 ~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v----~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  138 (340)
T d1tbga_          63 WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWV----MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCE----EEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEE
T ss_pred             ECCCCCEEEEEECCCceeeeecccceeEEEEecccccE----EeeEeeccceeeeeecccceeeccccccccccccccee
Confidence            3333344999999999999999876644332 354333    35678888877776643322200            000


Q ss_pred             cCCCcC----------------------------cc--------eeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCe
Q psy1242         327 LGDNFS----------------------------QK--------LRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNAR  370 (540)
Q Consensus       327 ~~~~~~----------------------------~~--------~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~  370 (540)
                      +..+..                            ..        ....+.+..+.+.+. ++++|+.|+.|++||+++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~  217 (340)
T d1tbga_         139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             ECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc-eeEEeecCceEEEEECCCCc
Confidence            000000                            00        000145566677777 57899999999999999999


Q ss_pred             EEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe--c
Q psy1242         371 IVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL--T  448 (540)
Q Consensus       371 ~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~  448 (540)
                      .+..+               .+|.+.|++++|+|    ++++|++|+.|++|++|+++..           ..+..+  .
T Consensus       218 ~~~~~---------------~~h~~~i~~v~~~p----~~~~l~s~s~d~~i~~~~~~~~-----------~~~~~~~~~  267 (340)
T d1tbga_         218 CRQTF---------------TGHESDINAICFFP----NGNAFATGSDDATCRLFDLRAD-----------QELMTYSHD  267 (340)
T ss_dssp             EEEEE---------------CCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTT-----------EEEEEECCT
T ss_pred             EEEEE---------------eCCCCCeEEEEECC----CCCEEEEEeCCCeEEEEeeccc-----------ccccccccc
Confidence            98888               88999999999999    9999999999999999998763           233333  4


Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEe
Q psy1242         449 GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFT  521 (540)
Q Consensus       449 ~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~  521 (540)
                      .|...|++++|+|++.+|++|+.||.|++|+. +++++.++.+|.+  +|.+++|+|+|.+|++ +.||.|++||
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            56778999999999999999999999999976 8999999999988  8999999999999998 4689999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-24  Score=216.62  Aligned_cols=250  Identities=14%  Similarity=0.096  Sum_probs=191.1

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccC------CCCcCCCCCCCCCccccCCCCeeeccCCCCCCccc
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQS------PSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPK  324 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~------~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~  324 (540)
                      |..+++.+.+.+++..++||+ |++|++||.........      .+|.+.|    ..+.|++|+.++++++.+... ..
T Consensus        50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I----~~v~~s~dg~~l~s~~~dg~i-~i  123 (337)
T d1gxra_          50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYI----RSCKLLPDGCTLIVGGEASTL-SI  123 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBE----EEEEECTTSSEEEEEESSSEE-EE
T ss_pred             CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcE----EEEEEcCCCCEEEEeeccccc-cc
Confidence            444455566666777799987 89999999876543222      2343222    357899999888776544332 22


Q ss_pred             cccCCCcC---c---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242         325 RHLGDNFS---Q---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT  398 (540)
Q Consensus       325 ~~~~~~~~---~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt  398 (540)
                      +.+...-.   .   .....+.+++++|++.. +++++.|+.+++|++.+++.....               .+|.+.|+
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~~~~~~~~~~~~~~---------------~~~~~~v~  187 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKV-CFSCCSDGNIAVWDLHNQTLVRQF---------------QGHTDGAS  187 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEE---------------CCCSSCEE
T ss_pred             cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc---------------cccccccc
Confidence            22221110   0   01123677888999995 789999999999999999888777               78999999


Q ss_pred             EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy1242         399 CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVH  478 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw  478 (540)
                      +++|++    ++..+++|+.|++|++||++.           ++.+..+ .|...|.+++|+|++.++++|+.||.+++|
T Consensus       188 ~l~~s~----~~~~~~~~~~d~~v~i~d~~~-----------~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~  251 (337)
T d1gxra_         188 CIDISN----DGTKLWTGGLDNTVRSWDLRE-----------GRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             EEEECT----TSSEEEEEETTSEEEEEETTT-----------TEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccc----ccccccccccccccccccccc-----------ceeeccc-ccccceEEEEEcccccccceeccccccccc
Confidence            999999    999999999999999999876           3344444 588999999999999999999999999999


Q ss_pred             eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeeecCCcceecC
Q psy1242         479 TTFGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHESHNDNLQKTA  540 (540)
Q Consensus       479 ~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~~~~~V~~va  540 (540)
                      +...........|..  .|.+++|+|+|++|++ +.||.|++|++. |+.+....|.+.|.+++
T Consensus       252 d~~~~~~~~~~~~~~--~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~  313 (337)
T d1gxra_         252 HVNKPDKYQLHLHES--CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD  313 (337)
T ss_dssp             ETTSSCEEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             ccccccccccccccc--ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEE
Confidence            875444455667777  7899999999999988 568999999987 88888888999988763

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-23  Score=210.24  Aligned_cols=222  Identities=17%  Similarity=0.125  Sum_probs=166.6

Q ss_pred             ecCCcEEEEEccCcceEEEEcCCCCCccc---CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc----C
Q psy1242         260 LHMPSVVTVTANHQFAINRWNPDYAASIQ---SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF----S  332 (540)
Q Consensus       260 ~~~~~~~lvs~s~D~tv~~W~~~~~~~~~---~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~----~  332 (540)
                      +.+++..+++++.|++|++||........   ...|...    ...+.+++++.++++++..... ....+....    .
T Consensus       105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~i-~~~~~~~~~~~~~~  179 (337)
T d1gxra_         105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA----CYALAISPDSKVCFSCCSDGNI-AVWDLHNQTLVRQF  179 (337)
T ss_dssp             ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC----EEEEEECTTSSEEEEEETTSCE-EEEETTTTEEEEEE
T ss_pred             EcCCCCEEEEeeccccccccccccccccccccccccccc----cccccccccccccccccccccc-cccccccccccccc
Confidence            33344449999999999999986543221   1223322    2245678888777766433322 111111100    0


Q ss_pred             cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ....-.+.++++++++.. +++|+.|+.+++||+++++.+..+                .|.+.|++++|+|    ++++
T Consensus       180 ~~~~~~v~~l~~s~~~~~-~~~~~~d~~v~i~d~~~~~~~~~~----------------~~~~~i~~l~~~~----~~~~  238 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTK-LWTGGLDNTVRSWDLREGRQLQQH----------------DFTSQIFSLGYCP----TGEW  238 (337)
T ss_dssp             CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEE----------------ECSSCEEEEEECT----TSSE
T ss_pred             cccccccccccccccccc-cccccccccccccccccceeeccc----------------ccccceEEEEEcc----cccc
Confidence            001123678888999995 788999999999999999987766                5889999999999    9999


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCC
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                      |++|+.|+.+++||++..            .......|...|++++|+|++++|++|+.||.|++|+. +++.+..+. |
T Consensus       239 l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~  305 (337)
T d1gxra_         239 LAVGMESSNVEVLHVNKP------------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E  305 (337)
T ss_dssp             EEEEETTSCEEEEETTSS------------CEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred             cceecccccccccccccc------------ccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-C
Confidence            999999999999998762            23456789999999999999999999999999999976 788887776 4


Q ss_pred             CCCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242         492 SGFASPESVVMSREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~  522 (540)
                      ..  .|.+++|+|+|++|++ +.||+|++|++
T Consensus       306 ~~--~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         306 SS--SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SS--CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CC--CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            44  6899999999999998 46899999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.8e-23  Score=210.29  Aligned_cols=252  Identities=20%  Similarity=0.172  Sum_probs=173.9

Q ss_pred             eecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCCC-CcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC
Q psy1242         251 HVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSPS-YAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD  329 (540)
Q Consensus       251 ~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~-~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~  329 (540)
                      |..+++.+.+.+++..++||+ |++|++|+..++....... +..          ...++               ..+..
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~----------~~~~~---------------~~~~~  114 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA----------ANKDP---------------ENLNT  114 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccc----------ccccc---------------ccccc
Confidence            555666667777777799987 8999999987654332211 110          00000               00000


Q ss_pred             CcCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-------------------------
Q psy1242         330 NFSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-------------------------  384 (540)
Q Consensus       330 ~~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-------------------------  384 (540)
                      .........+.+++|+|+|++ |++|+.||+|++||...++.+....+|...|.+                         
T Consensus       115 ~~~~~~~~~V~~l~~s~~~~~-l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         115 SSSPSSDLYIRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             ----CCCCBEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccccCCCCCEEEEEECCCCCc-ceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecc
Confidence            111112223778899999995 799999999999999999999999888887754                         


Q ss_pred             --eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC
Q psy1242         385 --RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE  462 (540)
Q Consensus       385 --~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd  462 (540)
                        ....... +.....++.+++.   ++.+|++|+.|+.|++|+..........    ........+|...|++++|+|+
T Consensus       194 ~~~~~~~~~-~~~~~~~~~~~~~---~~~~l~~~~~d~~i~i~~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         194 TGQCSLTLS-IEDGVTTVAVSPG---DGKYIAAGSLDRAVRVWDSETGFLVERL----DSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             TTEEEEEEE-CSSCEEEEEECST---TCCEEEEEETTSCEEEEETTTCCEEEEE----C------CCCSSCEEEEEECTT
T ss_pred             ccccccccc-cccccccccccCC---CCCeEEEEcCCCeEEEeecccCccceee----ccccccccCCCCCEEEEEECCC
Confidence              1222233 3344555556553   8899999999999999998763321000    1122344679999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeC-CC------------cEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEE
Q psy1242         463 LGLVVSGSQLGPVLVHTT-FG------------DLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRL  527 (540)
Q Consensus       463 g~~lasgs~Dg~v~iw~~-~g------------~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l  527 (540)
                      +.+|++|+.||.|++|+. ++            ........|..  .|.+++|+|+|++|++| .||.|++||+. |+.+
T Consensus       266 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccc--eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence            999999999999999965 22            23344455666  78999999999999985 68999999987 8888


Q ss_pred             Eeee-cCCcceec
Q psy1242         528 RHES-HNDNLQKT  539 (540)
Q Consensus       528 ~~~~-~~~~V~~v  539 (540)
                      .++. |.+.|+++
T Consensus       344 ~~l~~H~~~V~~~  356 (388)
T d1erja_         344 LMLQGHRNSVISV  356 (388)
T ss_dssp             EEEECCSSCEEEE
T ss_pred             EEEeCCCCCEEEE
Confidence            8886 88888876

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=1.4e-23  Score=208.65  Aligned_cols=227  Identities=13%  Similarity=0.016  Sum_probs=174.0

Q ss_pred             EEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc---C---cceeeE
Q psy1242         266 VTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF---S---QKLRVR  338 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~---~---~~~~v~  338 (540)
                      .++.++ +..|.+|+....... ...+|.+.|    .++.|++|+.++++|+.+... ..+.+....   .   ....-.
T Consensus        31 ~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v----~~~~~sp~g~~latg~~dg~i-~iwd~~~~~~~~~~~~~~~~~~  104 (311)
T d1nr0a1          31 KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQT----TVAKTSPSGYYCASGDVHGNV-RIWDTTQTTHILKTTIPVFSGP  104 (311)
T ss_dssp             EEEEEE-TTEEEEEETTCSSCCEEECCCSSCE----EEEEECTTSSEEEEEETTSEE-EEEESSSTTCCEEEEEECSSSC
T ss_pred             EEEEEe-CCEEEEEECCCCceeEEEcCCCCCE----EEEEEeCCCCeEeccccCceE-eeeeeeccccccccccccccCc
Confidence            355554 456899999765543 334676444    367799999988887654332 223222110   0   011123


Q ss_pred             EEEEEEecCCCEEEEEEec--CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc-EEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFW--DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC-FIAS  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~--Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~-~l~s  415 (540)
                      +.+++|+|+++. |++++.  +..++||+.++++....+               .+|.+.|++++|+|    +++ .|++
T Consensus       105 v~~v~~s~d~~~-l~~~~~~~~~~~~v~~~~~~~~~~~l---------------~~h~~~v~~v~~~~----~~~~~l~s  164 (311)
T d1nr0a1         105 VKDISWDSESKR-IAAVGEGRERFGHVFLFDTGTSNGNL---------------TGQARAMNSVDFKP----SRPFRIIS  164 (311)
T ss_dssp             EEEEEECTTSCE-EEEEECCSSCSEEEEETTTCCBCBCC---------------CCCSSCEEEEEECS----SSSCEEEE
T ss_pred             cccccccccccc-cccccccccccccccccccccccccc---------------cccccccccccccc----cceeeecc
Confidence            788999999996 455554  566999999998887777               78999999999999    776 4889


Q ss_pred             EeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecC----
Q psy1242         416 GSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDP----  490 (540)
Q Consensus       416 gs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~----  490 (540)
                      |+.|++|++||++.           .++...+.+|...|++++|+|+++++++++.||.|++|+. ++..+..+..    
T Consensus       165 gs~d~~i~i~d~~~-----------~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~  233 (311)
T d1nr0a1         165 GSDDNTVAIFEGPP-----------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK  233 (311)
T ss_dssp             EETTSCEEEEETTT-----------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS
T ss_pred             cccccccccccccc-----------cccccccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence            99999999999876           4577888999999999999999999999999999999976 6777766653    


Q ss_pred             ---CCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee
Q psy1242         491 ---PSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       491 ---~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~  531 (540)
                         |..  .|.+++|+|+|++|++| .||.|++||++ ++.+.++.
T Consensus       234 ~~~h~~--~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         234 NVAHSG--SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             SCSSSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccccc--cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence               444  68999999999999985 58999999987 77777775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.3e-23  Score=213.52  Aligned_cols=175  Identities=13%  Similarity=0.071  Sum_probs=144.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|+|++++ |++|+.|++|+|||++++.....+             .+.+|...|++++|+|    +++.|++|+.
T Consensus        54 V~~l~fsp~~~~-l~s~s~D~~i~vWd~~~~~~~~~~-------------~~~~~~~~v~~i~~~p----~~~~l~~~s~  115 (371)
T d1k8kc_          54 VTGVDWAPDSNR-IVTCGTDRNAYVWTLKGRTWKPTL-------------VILRINRAARCVRWAP----NEKKFAVGSG  115 (371)
T ss_dssp             EEEEEEETTTTE-EEEEETTSCEEEEEEETTEEEEEE-------------ECCCCSSCEEEEEECT----TSSEEEEEET
T ss_pred             EEEEEECCCCCE-EEEEECCCeEEEEeeccccccccc-------------cccccccccccccccc----ccccceeecc
Confidence            678889999995 789999999999999877655443             2267899999999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-----------------
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-----------------  481 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-----------------  481 (540)
                      |+++++|++......       ........+|...|.+++|+|++.+|++|+.||+|++|+..                 
T Consensus       116 d~~i~i~~~~~~~~~-------~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~  188 (371)
T d1k8kc_         116 SRVISICYFEQENDW-------WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM  188 (371)
T ss_dssp             TSSEEEEEEETTTTE-------EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred             cCcceeeeeeccccc-------ccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccc
Confidence            999999998764321       12334567899999999999999999999999999999641                 


Q ss_pred             --CcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         482 --GDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       482 --g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                        ++.+.....|..  .|.+++|+|+|++|++ +.|+.|++||++ ++.+..+. |..+|.+|+
T Consensus       189 ~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~  250 (371)
T d1k8kc_         189 PFGELMFESSSSCG--WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT  250 (371)
T ss_dssp             CTTCEEEECCCCSS--CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred             cceeeeeeccCccC--cEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeee
Confidence              345666677776  7899999999999988 568999999987 77777776 777887763

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-23  Score=212.36  Aligned_cols=248  Identities=18%  Similarity=0.152  Sum_probs=172.1

Q ss_pred             ceeeecCCcEEEEEccCcceEEEEcCCCCCcc-cCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCc-
Q psy1242         256 TYVTLHMPSVVTVTANHQFAINRWNPDYAASI-QSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ-  333 (540)
Q Consensus       256 ~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~-~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~-  333 (540)
                      +.+.+.+++..+++|+.|++|++|+....... ...+|...|.    .+.+++++..+++++..... ..+........ 
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~----~~~~~~~~~~~~~~~~~~~i-~~~d~~~~~~~~  199 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY----SLDYFPSGDKLVSGSGDRTV-RIWDLRTGQCSL  199 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE----EEEECTTSSEEEEEETTSEE-EEEETTTTEEEE
T ss_pred             EEEEECCCCCcceeccccccccccccccccccccccccccccc----ccccccccccccccccceee-eeeecccccccc
Confidence            34556667778999999999999998765533 2334554332    45567777666655332222 11211111000 


Q ss_pred             --ceeeEEEEEEEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCC
Q psy1242         334 --KLRVRHNCFVTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITAD  410 (540)
Q Consensus       334 --~~~v~~~~~~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg  410 (540)
                        ...-...++.+.+ +++ +|++|+.||.|++|+..+++....+....        ....+|.+.|++++|+|    ++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~--------~~~~~h~~~v~~l~~s~----~~  266 (388)
T d1erja_         200 TLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSEN--------ESGTGHKDSVYSVVFTR----DG  266 (388)
T ss_dssp             EEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECT----TS
T ss_pred             ccccccccccccccCCCCC-eEEEEcCCCeEEEeecccCccceeecccc--------ccccCCCCCEEEEEECC----CC
Confidence              0001133444454 666 58999999999999999998877763211        12257999999999999    99


Q ss_pred             cEEEEEeCCCcEEEEEcCCCcccccC-CCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         411 CFIASGSADCTVLLWHWNARTQSIVG-ETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       411 ~~l~sgs~DgtV~lWd~~~~~~~~~~-~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      ++|++|+.|++|++||++........ ......+......|...|++++|+|++++|++|+.||.|++|+. +++++.++
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            99999999999999998764322110 11223456677889999999999999999999999999999976 89999999


Q ss_pred             cCCCCCCCceEEEE------eeCCCEEEE-ecCCeEEEEecC
Q psy1242         489 DPPSGFASPESVVM------SREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       489 ~~~~~~~~v~~l~f------spdg~~l~s-~~dg~I~lw~~~  523 (540)
                      ++|.+  .|.++++      +|+|.+|++ +.||+|++|+++
T Consensus       347 ~~H~~--~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         347 QGHRN--SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ECCSS--CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             eCCCC--CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99988  7888875      678999998 568999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.91  E-value=7.7e-23  Score=200.02  Aligned_cols=226  Identities=15%  Similarity=0.140  Sum_probs=156.0

Q ss_pred             EEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEEEEec
Q psy1242         267 TVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCFVTTV  346 (540)
Q Consensus       267 lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~sp  346 (540)
                      +++++.|+++++|+...........+..........+.+++|+.+++++...  ....+...............+++++|
T Consensus        69 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~s~  146 (299)
T d1nr0a2          69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK--HIAIYSHGKLTEVPISYNSSCVALSN  146 (299)
T ss_dssp             EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS--EEEEEETTEEEEEECSSCEEEEEECT
T ss_pred             eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence            4566789999999986544333322222223333356788888777665321  12222111111111122367888999


Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                      +++. +++|+.|+.|++||+++++.....              ...|.+.|++++|+|    ++++|++++.|+.|++||
T Consensus       147 ~~~~-l~~g~~dg~i~~~d~~~~~~~~~~--------------~~~~~~~i~~~~~~~----~~~~l~~~~~d~~i~~~~  207 (299)
T d1nr0a2         147 DKQF-VAVGGQDSKVHVYKLSGASVSEVK--------------TIVHPAEITSVAFSN----NGAFLVATDQSRKVIPYS  207 (299)
T ss_dssp             TSCE-EEEEETTSEEEEEEEETTEEEEEE--------------EEECSSCEEEEEECT----TSSEEEEEETTSCEEEEE
T ss_pred             cccc-cccccccccccccccccccccccc--------------ccccccccccccccc----cccccccccccccccccc
Confidence            9995 799999999999999887755432              157899999999999    999999999999999999


Q ss_pred             cCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCc--EEEEecCCCCCCCceEEEEe
Q psy1242         427 WNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGD--LLRSLDPPSGFASPESVVMS  503 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~--~~~~l~~~~~~~~v~~l~fs  503 (540)
                      +.....        ......+.+|...|++++|+|++.+|++|+.||.|++|+. ++.  .+.....+... .+.+++| 
T Consensus       208 ~~~~~~--------~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~-  277 (299)
T d1nr0a2         208 VANNFE--------LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS-SVNSVIW-  277 (299)
T ss_dssp             GGGTTE--------ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS-CEEEEEE-
T ss_pred             cccccc--------ccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCC-cEEEEEE-
Confidence            875321        1234556789999999999999999999999999999975 333  33333333331 4566655 


Q ss_pred             eCCCEEEE-ecCCeEEEEecC
Q psy1242         504 REGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       504 pdg~~l~s-~~dg~I~lw~~~  523 (540)
                      +++.+|++ +.|+.|++||+.
T Consensus       278 ~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         278 LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EETTEEEEEETTSCEEEEECC
T ss_pred             CCCCEEEEEeCCCEEEEEecc
Confidence            55566665 679999999973

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1e-21  Score=193.64  Aligned_cols=186  Identities=18%  Similarity=0.212  Sum_probs=153.8

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee----------------------------------
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS----------------------------------  384 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~----------------------------------  384 (540)
                      +.|++|+|++++ ||+|+.||+|+|||+.+++.+..+..|...|.+                                  
T Consensus        58 I~~l~~s~~~~~-l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  136 (340)
T d1tbga_          58 IYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             EEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEE
T ss_pred             EEEEEECCCCCE-EEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccc
Confidence            788899999995 799999999999999999999988888777643                                  


Q ss_pred             --------------------------------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEE
Q psy1242         385 --------------------------------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWH  426 (540)
Q Consensus       385 --------------------------------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd  426 (540)
                                                            ........+...+.+..+.+    .+.++++|+.|++|++||
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~v~i~d  212 (340)
T d1tbga_         137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP----DTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             EEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT----TSSEEEEEETTTEEEEEE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc----ccceeEEeecCceEEEEE
Confidence                                                  11122233455677777777    788999999999999999


Q ss_pred             cCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeC
Q psy1242         427 WNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSRE  505 (540)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspd  505 (540)
                      ++.           ++++..+.+|...|++++|+|++.+|++|+.||.|++|+. ....+..+........|.+++|+|+
T Consensus       213 ~~~-----------~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  281 (340)
T d1tbga_         213 VRE-----------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             TTT-----------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred             CCC-----------CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence            876           5678899999999999999999999999999999999976 5666666654443337899999999


Q ss_pred             CCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcceecC
Q psy1242         506 GVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQKTA  540 (540)
Q Consensus       506 g~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~~va  540 (540)
                      |++|++| .||.|++||+. ++.+..+. |.+.|++|+
T Consensus       282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~  319 (340)
T d1tbga_         282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG  319 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            9999985 58999999986 88888886 899998874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.4e-22  Score=200.59  Aligned_cols=234  Identities=9%  Similarity=0.013  Sum_probs=161.8

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCC-CcC----CCCCCCCCccccCCCCeeeccCCC-CCCccccccC--CCcC--
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPS-YAE----TPGSPPGNLPLTLDPILTHPTSNN-NAPVPKRHLG--DNFS--  332 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~-~~~----~v~~~~~~~~~s~D~~l~~~g~~~-~~~~~~~~~~--~~~~--  332 (540)
                      ++..++|++.|++|++|+........... +..    ....+...+.|++|+..+++++.. ......+...  ....  
T Consensus        76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  155 (325)
T d1pgua1          76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV  155 (325)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred             CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee
Confidence            34569999999999999986543222111 000    001223357788998766543322 1111111111  0000  


Q ss_pred             cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ......+.+++|+|++..++++++.|+.+++||..+++....+..+            .+|...|++++|+|.   .+.+
T Consensus       156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~------------~~~~~~v~~v~~~pd---~~~~  220 (325)
T d1pgua1         156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH------------HKQGSFVRDVEFSPD---SGEF  220 (325)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS------------SCTTCCEEEEEECST---TCCE
T ss_pred             eecccccccccccccccceEEEeecccccccccccccccceecccc------------cCCCCccEEeeeccc---ccee
Confidence            0112236788899999877889999999999999988877666322            468889999999992   3689


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEeC-CCcEEEEe
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAIS---AELGLVVSGSQLGPVLVHTT-FGDLLRSL  488 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~s---pdg~~lasgs~Dg~v~iw~~-~g~~~~~l  488 (540)
                      |++|+.|+.|++||++.           ++++..+.+|...+.++.|+   +++++|++++.|++|+||+. ++++++.+
T Consensus       221 l~s~~~d~~i~iwd~~~-----------~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         221 VITVGSDRKISCFDGKS-----------GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             EEEEETTCCEEEEETTT-----------CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccceeeeeecc-----------ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            99999999999999876           46788888888877665555   68999999999999999976 78999888


Q ss_pred             cCCCCCCCceEEEE--eeCCCEEEEecCCeEEEEec
Q psy1242         489 DPPSGFASPESVVM--SREGVIVVNYERGHIAAFTM  522 (540)
Q Consensus       489 ~~~~~~~~v~~l~f--spdg~~l~s~~dg~I~lw~~  522 (540)
                      ..+.....+..+++  .+++.++.++.||.|++||+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            87765333444444  44555544567999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.3e-22  Score=191.98  Aligned_cols=233  Identities=15%  Similarity=0.164  Sum_probs=172.3

Q ss_pred             cceeeecCCcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCc-C
Q psy1242         255 NTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNF-S  332 (540)
Q Consensus       255 ~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~-~  332 (540)
                      +....+.++...+++++.+.++..|+........ ...|...    ...+.+++++..+++++.+... ..+.+.... .
T Consensus        62 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~  136 (317)
T d1vyhc1          62 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN----VSSVSIMPNGDHIVSASRDKTI-KMWEVQTGYCV  136 (317)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC----EEEEEECSSSSEEEEEETTSEE-EEEETTTCCEE
T ss_pred             EEEEeeeccccccccccccccccccccccccccccccccccc----ceeeeccCCCceEEeeccCcce-eEeecccceee
Confidence            3444455566668899999999999977654322 2233322    2245567777665555332222 111111100 0


Q ss_pred             c---ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCcc--
Q psy1242         333 Q---KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNI--  407 (540)
Q Consensus       333 ~---~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~--  407 (540)
                      .   .....+.+++++++++. |++|+.|+.|++|+..+++....+               .+|...+.+++++|...  
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~  200 (317)
T d1vyhc1         137 KTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKECKAEL---------------REHRHVVECISWAPESSYS  200 (317)
T ss_dssp             EEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEECCSCGGG
T ss_pred             eEEccCCCcceeeecccCCCE-EEEEeCCCeEEEEeeccceeeEEE---------------ecCCCCceEEEEeeccccc
Confidence            0   01123678889999995 799999999999999999988888               66777777777766200  


Q ss_pred             --------------CCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC
Q psy1242         408 --------------TADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG  473 (540)
Q Consensus       408 --------------~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg  473 (540)
                                    ..+..+++|+.|++|++|+++.           ++++..+.+|...|.+++++|++++|++|+.||
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  269 (317)
T d1vyhc1         201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-----------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK  269 (317)
T ss_dssp             GGGGCCSCC-------CCEEEEEETTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred             eeeccccceeeeeccCCceeEeccCCCEEEEEECCC-----------CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC
Confidence                          0345799999999999999876           567889999999999999999999999999999


Q ss_pred             cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEe
Q psy1242         474 PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFT  521 (540)
Q Consensus       474 ~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~  521 (540)
                      .|++|+. +++++.++.+|.+  +|.+++|+|++++|++ +.||+|++|+
T Consensus       270 ~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         270 TLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECCTTSCCCEEEECCSS--CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             eEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999976 8899999999988  8999999999999988 5689999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=8.7e-22  Score=199.94  Aligned_cols=167  Identities=14%  Similarity=0.025  Sum_probs=135.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|+|+++. |++|+.|+++++|+.+........           .....+|.+.|++++|+|    ++++|++|+.
T Consensus        98 v~~i~~~p~~~~-l~~~s~d~~i~i~~~~~~~~~~~~-----------~~~~~~~~~~v~~v~~~p----~~~~l~s~s~  161 (371)
T d1k8kc_          98 ARCVRWAPNEKK-FAVGSGSRVISICYFEQENDWWVC-----------KHIKKPIRSTVLSLDWHP----NSVLLAAGSC  161 (371)
T ss_dssp             EEEEEECTTSSE-EEEEETTSSEEEEEEETTTTEEEE-----------EEECTTCCSCEEEEEECT----TSSEEEEEET
T ss_pred             cccccccccccc-ceeecccCcceeeeeecccccccc-----------cccccccccccccccccc----cccceecccc
Confidence            678889999996 799999999999998766543332           112267899999999999    9999999999


Q ss_pred             CCcEEEEEcCCCcccccC-------CCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecC
Q psy1242         419 DCTVLLWHWNARTQSIVG-------ETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDP  490 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~-------~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~  490 (540)
                      |++|++|+..........       .......+....+|...|.+++|+|+++.|++++.||+|++|+. +++.+..+..
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence            999999998653321100       11123456777889999999999999999999999999999976 7888999998


Q ss_pred             CCCCCCceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         491 PSGFASPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      |..  +|.+++|+|+|++|++|.|+.+.+|..+
T Consensus       242 ~~~--~v~s~~fs~d~~~la~g~d~~~~~~~~~  272 (371)
T d1k8kc_         242 ETL--PLLAVTFITESSLVAAGHDCFPVLFTYD  272 (371)
T ss_dssp             SSC--CEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred             ccc--cceeeeecCCCCEEEEEcCCceEEEEee
Confidence            887  7899999999999999988887776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.88  E-value=2.3e-21  Score=189.42  Aligned_cols=231  Identities=16%  Similarity=0.157  Sum_probs=163.9

Q ss_pred             cccceeEEEecCCCCCeeeecccceeeecCCcEEEEEccCcceEEEEcCCCCCcccCC--CCcCCCCCCCCCccccCCCC
Q psy1242         233 VLDDVCMSLKFPSNSPICHVTANTYVTLHMPSVVTVTANHQFAINRWNPDYAASIQSP--SYAETPGSPPGNLPLTLDPI  310 (540)
Q Consensus       233 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~--~~~~~v~~~~~~~~~s~D~~  310 (540)
                      .|.+.+..+.|++++..                 ++|||.|++|++||..++......  .|.+.|    ..+.+++|+.
T Consensus        10 GH~~~V~~l~~s~dg~~-----------------l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v----~~v~~~~~g~   68 (299)
T d1nr0a2          10 GHNKAITALSSSADGKT-----------------LFSADAEGHINSWDISTGISNRVFPDVHATMI----TGIKTTSKGD   68 (299)
T ss_dssp             CCSSCEEEEEECTTSSE-----------------EEEEETTSCEEEEETTTCCEEECSSCSCSSCE----EEEEECTTSC
T ss_pred             CCCCCcEEEEECCCCCE-----------------EEEEcCCCeEEEEECCCCcEEEEEcCCCCCcE----EEEEeeccce
Confidence            34555566666655544                 999999999999999876644332  344333    3567889998


Q ss_pred             eeeccCCCCCCccccccCCC-------cCcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee
Q psy1242         311 LTHPTSNNNAPVPKRHLGDN-------FSQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT  383 (540)
Q Consensus       311 l~~~g~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~  383 (540)
                      +++++.+.  ....+.....       ........+.+++++++|+. ++++ .++.+++|+..  +.....        
T Consensus        69 ~~~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-~~~~-~~~~i~~~~~~--~~~~~~--------  134 (299)
T d1nr0a2          69 LFTVSWDD--HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI-AVAA-CYKHIAIYSHG--KLTEVP--------  134 (299)
T ss_dssp             EEEEETTT--EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSC-EEEE-ESSEEEEEETT--EEEEEE--------
T ss_pred             eeccccee--eEEEeccCCcccccccccccccccccccccccccccc-cccc-ccccccccccc--cccccc--------
Confidence            87766322  2122221111       11112223677889999994 4554 47899999853  333322        


Q ss_pred             eeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCC
Q psy1242         384 SRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAEL  463 (540)
Q Consensus       384 ~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg  463 (540)
                               ....+++++|+|    ++++|++|+.|+.|++||++....          .......|...|++++|+|++
T Consensus       135 ---------~~~~~~~~~~s~----~~~~l~~g~~dg~i~~~d~~~~~~----------~~~~~~~~~~~i~~~~~~~~~  191 (299)
T d1nr0a2         135 ---------ISYNSSCVALSN----DKQFVAVGGQDSKVHVYKLSGASV----------SEVKTIVHPAEITSVAFSNNG  191 (299)
T ss_dssp             ---------CSSCEEEEEECT----TSCEEEEEETTSEEEEEEEETTEE----------EEEEEEECSSCEEEEEECTTS
T ss_pred             ---------cccccccccccc----cccccccccccccccccccccccc----------ccccccccccccccccccccc
Confidence                     334678999999    999999999999999999876321          112345789999999999999


Q ss_pred             CEEEEEeCCCcEEEEeC-CCcEE---EEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC
Q psy1242         464 GLVVSGSQLGPVLVHTT-FGDLL---RSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN  523 (540)
Q Consensus       464 ~~lasgs~Dg~v~iw~~-~g~~~---~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~  523 (540)
                      .++++++.||.|++|+. ++..+   ..+..|..  .|.+++|+|+|++|+++ .||.|++|+++
T Consensus       192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA--KVACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccc--ccccccccccccceEEEcCCCEEEEEECC
Confidence            99999999999999975 45444   34455666  78999999999999985 68999999987

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.7e-22  Score=194.16  Aligned_cols=249  Identities=15%  Similarity=0.128  Sum_probs=172.5

Q ss_pred             EEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC------CcCcceee
Q psy1242         265 VVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD------NFSQKLRV  337 (540)
Q Consensus       265 ~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~------~~~~~~~v  337 (540)
                      ..++||+.|++|++||..+++... ..+|.+.|.    .+.+++++.+++++ .+.. ...+.+..      ........
T Consensus        24 ~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~----~l~~s~~~~l~s~s-~D~~-i~iw~~~~~~~~~~~~~~~~~~   97 (355)
T d1nexb2          24 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW----ALKYAHGGILVSGS-TDRT-VRVWDIKKGCCTHVFEGHNSTV   97 (355)
T ss_dssp             TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE----EEEEETTTEEEEEE-TTCC-EEEEETTTTEEEEEECCCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE----EEEEcCCCEEEEEe-cccc-cccccccccccccccccccccc
Confidence            359999999999999998766443 345765543    56788877665544 2222 22222211      11122223


Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEE-----------------------ecccceeee----------
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQII-----------------------FGHYGVVTS----------  384 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l-----------------------~~~~~~v~~----------  384 (540)
                      ......++++++. +++++.|++|++||+.++......                       ..|...+..          
T Consensus        98 ~~~~~~~~~~~~~-~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  176 (355)
T d1nexb2          98 RCLDIVEYKNIKY-IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS  176 (355)
T ss_dssp             EEEEEEEETTEEE-EEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             cccccccccccce-eeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeee
Confidence            3556667888884 799999999999999876543221                       111111110          


Q ss_pred             ---------------eeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc
Q psy1242         385 ---------------RIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG  449 (540)
Q Consensus       385 ---------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~  449 (540)
                                     +.+....++...+.++.++|    ++..+++++.|++|++||...           +.++..+.+
T Consensus       177 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~i~i~d~~~-----------~~~~~~~~~  241 (355)
T d1nexb2         177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH----ERKRCISASMDTTIRIWDLEN-----------GELMYTLQG  241 (355)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----TTTEEEEEETTSCEEEEETTT-----------CCEEEEECC
T ss_pred             ecccceeeeeecccccceeeeeccccccccccccc----cceeeecccccceEEeeeccc-----------ccccccccc
Confidence                           34556677888999999999    899999999999999999876           467888999


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEE
Q psy1242         450 HEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRL  527 (540)
Q Consensus       450 h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l  527 (540)
                      |...|.++++++  ++|++|+.||+|++|+. ++....  ..|... .....+++++++++++|+|+.|++||++ |+++
T Consensus       242 h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         242 HTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF--SYHHTN-LSAITTFYVSDNILVSGSENQFNIYNLRSGKLV  316 (355)
T ss_dssp             CSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE--EEECTT-CCCCCEEEECSSEEEEEETTEEEEEETTTCCBC
T ss_pred             cccccccccccc--ceeeeeecccccccccccccceec--ccccCC-ceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEE
Confidence            999999999864  68999999999999987 444333  334431 2234567889999999999999999987 7777


Q ss_pred             Eee--ecCCcceecC
Q psy1242         528 RHE--SHNDNLQKTA  540 (540)
Q Consensus       528 ~~~--~~~~~V~~va  540 (540)
                      ...  .|.+.|.+|+
T Consensus       317 ~~~~~~~~~~V~~v~  331 (355)
T d1nexb2         317 HANILKDADQIWSVN  331 (355)
T ss_dssp             CSCTTTTCSEEEEEE
T ss_pred             EEEecCCCCCEEEEE
Confidence            543  3778888764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.9e-21  Score=199.04  Aligned_cols=175  Identities=15%  Similarity=0.155  Sum_probs=125.9

Q ss_pred             EEEEEecCCcEEEEEccCCeEE-EEEecccceee--eeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEc
Q psy1242         351 LLACGFWDNSFRVFSTDNARIV-QIIFGHYGVVT--SRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHW  427 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~-~~l~~~~~~v~--~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~  427 (540)
                      .+++++.||++++|++...... .....+.....  .........+...++|++|+|    ++ +|++|+.|++|+|||+
T Consensus       138 ~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~----dg-~lasgs~Dg~i~iwd~  212 (393)
T d1sq9a_         138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE----RG-LIATGFNNGTVQISEL  212 (393)
T ss_dssp             EEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT----TS-EEEEECTTSEEEEEET
T ss_pred             EEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC----CC-EEEEEeCCCcEEEEee
Confidence            5788999999999998532110 00000000000  011111235667799999999    77 8999999999999998


Q ss_pred             CCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCc---EEEEeC-CCcEEEEec-------------C
Q psy1242         428 NARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGP---VLVHTT-FGDLLRSLD-------------P  490 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~---v~iw~~-~g~~~~~l~-------------~  490 (540)
                      .+.....     ..++...+.+|...|++++|+|+|++|++|+.|++   |++|+. +++++.++.             +
T Consensus       213 ~~~~~~~-----~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~g  287 (393)
T d1sq9a_         213 STLRPLY-----NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  287 (393)
T ss_dssp             TTTEEEE-----EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             ccccccc-----ccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeec
Confidence            7633110     01233456789999999999999999999999985   788976 788888775             5


Q ss_pred             CCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-CcEEEeee-cCCcce
Q psy1242         491 PSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GNRLRHES-HNDNLQ  537 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~~l~~~~-~~~~V~  537 (540)
                      |.+  .|++++|+|+|++|+++ .|++|++||+. |+.+.++. |.+.|.
T Consensus       288 H~~--~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         288 HSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             BSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             ccC--ceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence            666  78999999999999985 68999999987 88888886 777764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2e-21  Score=188.84  Aligned_cols=149  Identities=13%  Similarity=0.246  Sum_probs=114.0

Q ss_pred             EEecCCCEEEEEEecC-CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCc
Q psy1242         343 VTTVDSRFLLACGFWD-NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCT  421 (540)
Q Consensus       343 ~~spdg~~llasgs~D-gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dgt  421 (540)
                      ++++++..+ ++++.| +.+++|++...+....+              ...|.+.|++++|+|    ++.+|++|+.||.
T Consensus       125 ~~~~~~~~~-~v~~~~~~~v~~~~~~~~~~~~~~--------------~~~~~~~v~~~~~s~----~~~~l~~g~~dg~  185 (287)
T d1pgua2         125 AVSLSQNYV-AVGLEEGNTIQVFKLSDLEVSFDL--------------KTPLRAKPSYISISP----SETYIAAGDVMGK  185 (287)
T ss_dssp             EEEECSSEE-EEEETTTSCEEEEETTEEEEEEEC--------------SSCCSSCEEEEEECT----TSSEEEEEETTSC
T ss_pred             eeeccCcce-eeeccccceeeeeeccccceeeee--------------eeccCCceeEEEecc----Ccccccccccccc
Confidence            445566643 333333 45666766544433332              135788999999999    9999999999999


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC----------CCEEEEEeCCCcEEEEeC-C-CcEEEEec
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE----------LGLVVSGSQLGPVLVHTT-F-GDLLRSLD  489 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd----------g~~lasgs~Dg~v~iw~~-~-g~~~~~l~  489 (540)
                      |++||+....          .....+.+|...|.+++|+|.          +.++++|+.|++|+||+. + ++.+..+.
T Consensus       186 i~i~d~~~~~----------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~  255 (287)
T d1pgua2         186 ILLYDLQSRE----------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN  255 (287)
T ss_dssp             EEEEETTTTE----------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT
T ss_pred             ccceeecccc----------cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC
Confidence            9999987632          122345789999999999875          468999999999999975 3 56788888


Q ss_pred             CCCCCCCceEEEEeeCCCEEEEecCCeEEEEec
Q psy1242         490 PPSGFASPESVVMSREGVIVVNYERGHIAAFTM  522 (540)
Q Consensus       490 ~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~  522 (540)
                      +|..  .|.+++|+|++.++.+|.|+.|++|++
T Consensus       256 ~h~~--~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         256 AHKD--GVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             SSTT--CEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CCCC--CeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            8988  789999999998777789999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.6e-20  Score=185.58  Aligned_cols=233  Identities=9%  Similarity=0.012  Sum_probs=163.5

Q ss_pred             EEEEcc-CcceEEEEcCCCCCccc---CCCCcCCCCCCCCCccccC--CCCeeeccCCCCCCccccccCCC-----cCcc
Q psy1242         266 VTVTAN-HQFAINRWNPDYAASIQ---SPSYAETPGSPPGNLPLTL--DPILTHPTSNNNAPVPKRHLGDN-----FSQK  334 (540)
Q Consensus       266 ~lvs~s-~D~tv~~W~~~~~~~~~---~~~~~~~v~~~~~~~~~s~--D~~l~~~g~~~~~~~~~~~~~~~-----~~~~  334 (540)
                      .++.++ ....++.|+........   ..+|.   ......+.|+|  |+.++++|+.+... ..+.+...     ....
T Consensus        31 ~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~---~~~v~~v~fsP~~~g~~lasgs~Dg~i-~iWd~~~~~~~~~~~~~  106 (325)
T d1pgua1          31 AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG---SSVVTTVKFSPIKGSQYLCSGDESGKV-IVWGWTFDKESNSVEVN  106 (325)
T ss_dssp             EEEEEETTEEEEEECCSSCCSSCSEEEECTTT---TSCEEEEEECSSTTCCEEEEEETTSEE-EEEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCEEEEEEeCCCCCccceEEEeCCC---CCCEEEEEEeeCCCCCEEEEEeCCCCE-EEeeecCCcceeeeecc
Confidence            355544 44567889865543222   22333   23334567775  56777777544433 22222110     0000


Q ss_pred             -------eeeEEEEEEEecCCCEEEEEE-ecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc
Q psy1242         335 -------LRVRHNCFVTTVDSRFLLACG-FWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN  406 (540)
Q Consensus       335 -------~~v~~~~~~~spdg~~llasg-s~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~  406 (540)
                             ....+.+++|+++|+.+++++ +.++.+++|+.++++.+..+               .+|...|++++|+|  
T Consensus       107 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~h~~~v~~~~~~~--  169 (325)
T d1pgua1         107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV---------------SGHSQRINACHLKQ--  169 (325)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC---------------CSCSSCEEEEEECS--
T ss_pred             cccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee---------------eecccccccccccc--
Confidence                   111367889999999754443 34778999999999988888               78999999999999  


Q ss_pred             cCCCc-EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeC-CCc
Q psy1242         407 ITADC-FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAE-LGLVVSGSQLGPVLVHTT-FGD  483 (540)
Q Consensus       407 ~~dg~-~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spd-g~~lasgs~Dg~v~iw~~-~g~  483 (540)
                        ++. .+++++.|+.+++||.......        .......+|...|++++|+|+ +.++++|+.||.|++|+. +++
T Consensus       170 --~~~~~~~~~~~d~~v~~~d~~~~~~~--------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         170 --SRPMRSMTVGDDGSVVFYQGPPFKFS--------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             --SSSCEEEEEETTTEEEEEETTTBEEE--------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred             --cccceEEEeecccccccccccccccc--------eecccccCCCCccEEeeeccccceeccccccccceeeeeecccc
Confidence              665 5788999999999997653211        122234577889999999997 679999999999999975 899


Q ss_pred             EEEEecCCCCCCCceEEEEe---eCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         484 LLRSLDPPSGFASPESVVMS---REGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       484 ~~~~l~~~~~~~~v~~l~fs---pdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      .+.++.+|..  ++.++.|+   |+|++|++ +.|+.|++||++ ++.+..+.
T Consensus       240 ~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         240 FLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             EEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccccccccc--ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence            9999998877  56666665   68888887 568999999988 77777765

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4.7e-22  Score=203.54  Aligned_cols=159  Identities=10%  Similarity=0.065  Sum_probs=121.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.|++|+|++  +||+|+.||+|+|||+.+++.+..++         ....+.+|.+.|++|+|+|    +|++|++|+.
T Consensus       187 ~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~---------~~~~l~~h~~~V~~l~~sp----dg~~l~sgs~  251 (393)
T d1sq9a_         187 ATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFE---------SQHSMINNSNSIRSVKFSP----QGSLLAIAHD  251 (393)
T ss_dssp             CCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEE---------CCC---CCCCCEEEEEECS----STTEEEEEEE
T ss_pred             EEEEEECCCC--EEEEEeCCCcEEEEeecccccccccc---------cccccccccceEEEccccc----ccceeeeecC
Confidence            5678889998  47999999999999999999887773         2334478999999999999    9999999999


Q ss_pred             CCc---EEEEEcCCCccccc--CCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCC
Q psy1242         419 DCT---VLLWHWNARTQSIV--GETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPS  492 (540)
Q Consensus       419 Dgt---V~lWd~~~~~~~~~--~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~  492 (540)
                      |++   |++||++.+.....  ...........+.+|.+.|++++|+|++++|+|||.|++|+||+. +|+++.++++|.
T Consensus       252 D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence            975   89999876432110  001112233445689999999999999999999999999999976 899999999997


Q ss_pred             CCC--CceEEEEeeCCCEEEEe
Q psy1242         493 GFA--SPESVVMSREGVIVVNY  512 (540)
Q Consensus       493 ~~~--~v~~l~fspdg~~l~s~  512 (540)
                      +.+  ....++|+|+|..++++
T Consensus       332 ~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         332 DDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             GGCSSGGGCCCBCTTSCBCSSC
T ss_pred             CcccCCccEEEECCCCCEEEEc
Confidence            622  12357888888876654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.4e-19  Score=173.12  Aligned_cols=245  Identities=15%  Similarity=0.268  Sum_probs=156.6

Q ss_pred             EEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC----cceeeEEE
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS----QKLRVRHN  340 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~----~~~~v~~~  340 (540)
                      .+||||.|++|++||..+++... ..+|.+.|.    .+.++++  ++++++.+... ..+.......    ......+.
T Consensus        29 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~----~v~~~~~--~l~s~s~D~~~-~~~~~~~~~~~~~~~~~~~~~~  101 (342)
T d2ovrb2          29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW----SSQMRDN--IIISGSTDRTL-KVWNAETGECIHTLYGHTSTVR  101 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECCCCSSCEE----EEEEETT--EEEEEETTSCE-EEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEE----EEEeCCC--ccccceecccc-cccccccccceecccccceeEe
Confidence            48999999999999998776443 345665443    3445543  44444332222 1111111000    00000112


Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceee-------------------------eeeEEEeeccCc
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVT-------------------------SRIVQIIFGHYG  395 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~-------------------------~~~~~~l~~h~~  395 (540)
                      ..  ..... .++.+..|+++.+|+..+++....+..+.....                         ...+..+.+|..
T Consensus       102 ~~--~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  178 (342)
T d2ovrb2         102 CM--HLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN  178 (342)
T ss_dssp             EE--EEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS
T ss_pred             ee--ecccc-cccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccc
Confidence            22  12233 246666777777777777665544432221110                         034455578877


Q ss_pred             ceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy1242         396 VVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPV  475 (540)
Q Consensus       396 ~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v  475 (540)
                      .+.++.+      ++.+|++|+.||+|++||++.           .+++..+.+|...+.++++++  ++|++|+.||.|
T Consensus       179 ~~~~~~~------~~~~l~s~~~dg~i~~~d~~~-----------~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i  239 (342)
T d2ovrb2         179 RVYSLQF------DGIHVVSGSLDTSIRVWDVET-----------GNCIHTLTGHQSLTSGMELKD--NILVSGNADSTV  239 (342)
T ss_dssp             CEEEEEE------CSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCCSCEEEEEEET--TEEEEEETTSCE
T ss_pred             ccccccC------CCCEEEEEeCCCeEEEeeccc-----------ceeeeEecccccceeEEecCC--CEEEEEcCCCEE
Confidence            7766554      678999999999999999876           467888999999999888764  699999999999


Q ss_pred             EEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee------cCCcceecC
Q psy1242         476 LVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES------HNDNLQKTA  540 (540)
Q Consensus       476 ~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~------~~~~V~~va  540 (540)
                      ++|+. .++....+..+... .....++++++.++++ +.||+|++||++ |+.+..+.      |.+.|++|+
T Consensus       240 ~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         240 KIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             EEEETTTCCEEEEECSTTSC-SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             EEEeccccccccccccccee-eeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence            99976 66777777665431 2234455566778877 568999999987 88887663      556677763

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.8e-18  Score=160.94  Aligned_cols=228  Identities=18%  Similarity=0.219  Sum_probs=151.0

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCccc-CCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcc--eeeEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQ-SPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQK--LRVRH  339 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~-~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~--~~v~~  339 (540)
                      ++..+||||.|++|++||..+.+... ..+|.+.|.      ++++|+.++++|+.+... ..+.+.......  .....
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~------~v~~~~~~l~s~s~D~~i-~~~~~~~~~~~~~~~~~~~   96 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------CLQYDERVIITGSSDSTV-RVWDVNTGEMLNTLIHHCE   96 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE------EEECCSSEEEEEETTSCE-EEEESSSCCEEEEECCCCS
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEe------eeecccceeecccccccc-ccccccccccccccccccc
Confidence            45569999999999999998766443 345775553      455677777777544332 222221110000  00001


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeE---EEEEecccceeee-------------------------eeEEEee
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARI---VQIIFGHYGVVTS-------------------------RIVQIIF  391 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~---~~~l~~~~~~v~~-------------------------~~~~~l~  391 (540)
                      ......+.... ++++..++.+++|+..+...   ...+..|...+..                         +.+..+.
T Consensus        97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~  175 (293)
T d1p22a2          97 AVLHLRFNNGM-MVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN  175 (293)
T ss_dssp             CEEEEECCTTE-EEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccc-eeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEc
Confidence            11222334443 46666677777777665432   2222333333211                         3445568


Q ss_pred             ccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC
Q psy1242         392 GHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       392 ~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~  471 (540)
                      +|...|.++.+++      ..+++++.|++|++||++.           ..++..+.+|...+.+  +++++.+|++|+.
T Consensus       176 ~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~  236 (293)
T d1p22a2         176 GHKRGIACLQYRD------RLVVSGSSDNTIRLWDIEC-----------GACLRVLEGHEELVRC--IRFDNKRIVSGAY  236 (293)
T ss_dssp             CCSSCEEEEEEET------TEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEE--EECCSSEEEEEET
T ss_pred             ccccccccccCCC------CeEEEecCCCEEEEEeccc-----------ceeeeeecccceeeee--ccccceEEEEEcC
Confidence            8888888887754      6899999999999999876           4567888889888875  4567889999999


Q ss_pred             CCcEEEEeC----------CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEe
Q psy1242         472 LGPVLVHTT----------FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFT  521 (540)
Q Consensus       472 Dg~v~iw~~----------~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~  521 (540)
                      ||.|++|+.          ....+..+.+|.+  .|.+++|  ++.+|++ +.||+|++||
T Consensus       237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~--~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             CCEEEEEECCCCccccccCCceeeEEecCCCC--CEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            999999963          2357889999988  7899988  4667777 5689999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2.7e-18  Score=167.55  Aligned_cols=125  Identities=10%  Similarity=-0.005  Sum_probs=88.3

Q ss_pred             cCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCC----CCCcceEEeccCCCCEEEEEEcCCCCEEEE
Q psy1242         393 HYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGET----DTPTPRATLTGHEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       393 h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~----~~~~~~~~l~~h~~~V~~v~~spdg~~las  468 (540)
                      +...+.++++.+.   ++..+++++.||.+.+|+............    ..........+|...|++++|+|++.+|||
T Consensus       192 ~~~~~~~~~~~~~---~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~las  268 (342)
T d1yfqa_         192 LKYQIRDVALLPK---EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             CSSCEEEEEECSG---GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             cccceeeeEeecC---CCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEE
Confidence            3344556665552   678899999999999999865432211100    000111123467778999999999999999


Q ss_pred             EeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         469 GSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       469 gs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      |+.||.|++|+. +++.+.++..+.   .+..++|+|+|+++++ ++|+.+++|..-
T Consensus       269 g~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         269 AGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EETTSCEEEEETTTTEEEEECCCCS---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             ECCCCEEEEEECCCCcEEEEecCCC---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            999999999986 778888886544   3567899999999887 457777777543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1e-17  Score=163.82  Aligned_cols=147  Identities=20%  Similarity=0.359  Sum_probs=118.5

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC  420 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg  420 (540)
                      +..+++++.. +++|+.||+|++||++.++.+..+               .+|...|.++++++      ++|++|+.|+
T Consensus       180 ~~~~~~~~~~-l~s~~~dg~i~~~d~~~~~~~~~~---------------~~~~~~v~~~~~~~------~~l~s~s~d~  237 (342)
T d2ovrb2         180 VYSLQFDGIH-VVSGSLDTSIRVWDVETGNCIHTL---------------TGHQSLTSGMELKD------NILVSGNADS  237 (342)
T ss_dssp             EEEEEECSSE-EEEEETTSCEEEEETTTCCEEEEE---------------CCCCSCEEEEEEET------TEEEEEETTS
T ss_pred             cccccCCCCE-EEEEeCCCeEEEeecccceeeeEe---------------cccccceeEEecCC------CEEEEEcCCC
Confidence            3345678885 789999999999999999988887               78999999988765      6999999999


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecC-----C
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDP-----P  491 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~-----~  491 (540)
                      +|++||+...           +....+.   .|...+.+++++  +.++++|+.||+|++|+. +|++++++..     |
T Consensus       238 ~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~  304 (342)
T d2ovrb2         238 TVKIWDIKTG-----------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  304 (342)
T ss_dssp             CEEEEETTTC-----------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             EEEEEecccc-----------cccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence            9999998763           3344443   466677777765  568999999999999976 8999887752     3


Q ss_pred             CCCCCceEEEEeeCCCEEEEec-CC----eEEEEecCC
Q psy1242         492 SGFASPESVVMSREGVIVVNYE-RG----HIAAFTMNG  524 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~-dg----~I~lw~~~g  524 (540)
                      ..  .|++++|+|++.+|++|+ ||    .|++||.+-
T Consensus       305 ~~--~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         305 GG--VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TC--EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CC--CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            34  689999999999999864 55    499999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3e-18  Score=168.69  Aligned_cols=222  Identities=15%  Similarity=0.149  Sum_probs=144.0

Q ss_pred             cCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCC------------------CCCCCCccccCCCCeeeccCCCCCCc
Q psy1242         261 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETP------------------GSPPGNLPLTLDPILTHPTSNNNAPV  322 (540)
Q Consensus       261 ~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v------------------~~~~~~~~~s~D~~l~~~g~~~~~~~  322 (540)
                      ..+...+++++.|++|++|+................                  ..........+++.+++.+..+... 
T Consensus       105 ~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i-  183 (355)
T d1nexb2         105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL-  183 (355)
T ss_dssp             ETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCE-
T ss_pred             ccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccccee-
Confidence            345677899999999999998764422211110000                  0000011233445444444322211 


Q ss_pred             cccccCCCc----CcceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceE
Q psy1242         323 PKRHLGDNF----SQKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVT  398 (540)
Q Consensus       323 ~~~~~~~~~----~~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt  398 (540)
                      ..+.+....    .........++.+++++.. +++++.|++|++||.+++..+..+               .+|...|+
T Consensus       184 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~---------------~~h~~~v~  247 (355)
T d1nexb2         184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENGELMYTL---------------QGHTALVG  247 (355)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTCCEEEEE---------------CCCSSCCC
T ss_pred             eeeecccccceeeeecccccccccccccccee-eecccccceEEeeecccccccccc---------------cccccccc
Confidence            111111100    0011123567788999995 789999999999999999998888               88999999


Q ss_pred             EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEE-EEcCCCCEEEEEeCCCcEEE
Q psy1242         399 CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSV-AISAELGLVVSGSQLGPVLV  477 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v-~~spdg~~lasgs~Dg~v~i  477 (540)
                      ++++++      ++|++|+.||+|++||++..             ...+..|...+.++ ++++++.++++|+ ||.|+|
T Consensus       248 ~~~~~~------~~l~~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~v  307 (355)
T d1nexb2         248 LLRLSD------KFLVSAAADGSIRGWDANDY-------------SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNI  307 (355)
T ss_dssp             EEEECS------SEEEEECTTSEEEEEETTTC-------------CEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEE
T ss_pred             cccccc------ceeeeeeccccccccccccc-------------ceecccccCCceEEEEEcCCCCEEEEEe-CCEEEE
Confidence            999865      68999999999999998752             24455666666665 4567777776665 899999


Q ss_pred             EeC-CCcEEE-EecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEec
Q psy1242         478 HTT-FGDLLR-SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTM  522 (540)
Q Consensus       478 w~~-~g~~~~-~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~  522 (540)
                      |+. +|+++. .+.+|.+  +|.+++|+|+. ++++ +.||+++||-+
T Consensus       308 wd~~tg~~~~~~~~~~~~--~V~~v~~~~~~-~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         308 YNLRSGKLVHANILKDAD--QIWSVNFKGKT-LVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EETTTCCBCCSCTTTTCS--EEEEEEEETTE-EEEEEESSSCEEEEEE
T ss_pred             EECCCCCEEEEEecCCCC--CEEEEEEcCCe-EEEEEECCCcEEEEEE
Confidence            986 788875 4566776  78999999875 4544 66898766643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.1e-15  Score=143.66  Aligned_cols=131  Identities=22%  Similarity=0.306  Sum_probs=102.4

Q ss_pred             EEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE
Q psy1242         387 VQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV  466 (540)
Q Consensus       387 ~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l  466 (540)
                      ...+..|...|.++.+.+      ..+++++.|++|++||.+.           .+++..+.+|...+..+.++  +..+
T Consensus       131 ~~~~~~~~~~v~~~~~~~------~~~~~~s~d~~i~~~d~~~-----------~~~~~~~~~~~~~v~~~~~~--~~~l  191 (293)
T d1p22a2         131 RRVLVGHRAAVNVVDFDD------KYIVSASGDRTIKVWNTST-----------CEFVRTLNGHKRGIACLQYR--DRLV  191 (293)
T ss_dssp             EEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEEE--TTEE
T ss_pred             cccccccccccccceecc------cccccccCCCceeeecCCC-----------CcEEEEEcccccccccccCC--CCeE
Confidence            344567788888887754      5788999999999999876           45788899999999888775  5689


Q ss_pred             EEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC----------CcEEEeee-cC
Q psy1242         467 VSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN----------GNRLRHES-HN  533 (540)
Q Consensus       467 asgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~----------g~~l~~~~-~~  533 (540)
                      ++++.||+|++|+. +++.+.....+..  .+.  .+++++.+|++ +.||.|++|++.          ...+..+. |.
T Consensus       192 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~  267 (293)
T d1p22a2         192 VSGSSDNTIRLWDIECGACLRVLEGHEE--LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS  267 (293)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSS--CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS
T ss_pred             EEecCCCEEEEEecccceeeeeecccce--eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC
Confidence            99999999999976 7788888887776  343  56778888887 568999999864          23455554 88


Q ss_pred             CcceecC
Q psy1242         534 DNLQKTA  540 (540)
Q Consensus       534 ~~V~~va  540 (540)
                      +.|++|+
T Consensus       268 ~~V~~v~  274 (293)
T d1p22a2         268 GRVFRLQ  274 (293)
T ss_dssp             SCCCCEE
T ss_pred             CCEEEEE
Confidence            8887763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.69  E-value=3.1e-16  Score=161.68  Aligned_cols=258  Identities=10%  Similarity=0.027  Sum_probs=170.6

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC---------c
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS---------Q  333 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~---------~  333 (540)
                      ....+|+++.|++|++||..+.+....+.....    ...+.||+||..+++++.+. ....+.+...-.         .
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~----~~~vafSPDGk~l~~~~~d~-~v~vwd~~t~~~~~~~~i~~~~  105 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA----VHISRMSASGRYLLVIGRDA-RIDMIDLWAKEPTKVAEIKIGI  105 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECCSS----EEEEEECTTSCEEEEEETTS-EEEEEETTSSSCEEEEEEECCS
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCC----eeEEEECCCCCEEEEEeCCC-CEEEEEccCCceeEEEEEeCCC
Confidence            355679999999999999988775544433222    23578999998887665432 223333321110         0


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeee-----------------------------
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTS-----------------------------  384 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~-----------------------------  384 (540)
                      ...-.+...+|+|||+++++++..++++++||..+++++..+..|...+..                             
T Consensus       106 ~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            111123455667899988888889999999999999888777655432210                             


Q ss_pred             -----------eeEEEeeccCcceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCCCccccc-----------------
Q psy1242         385 -----------RIVQIIFGHYGVVTCLSRSECNITADCFIASGS-ADCTVLLWHWNARTQSIV-----------------  435 (540)
Q Consensus       385 -----------~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~~~~~~~-----------------  435 (540)
                                 .......++...+..++++|    ++++++++. .+..+.+++.........                 
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDS----SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH  261 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECT----TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECC----CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeec
Confidence                       01122235666788899999    888877765 455677777654321100                 


Q ss_pred             ------------CC--------------CCCCcceEEeccCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEeC-C
Q psy1242         436 ------------GE--------------TDTPTPRATLTGHEQPVTSVAISAELGLVVS-------GSQLGPVLVHTT-F  481 (540)
Q Consensus       436 ------------~~--------------~~~~~~~~~l~~h~~~V~~v~~spdg~~las-------gs~Dg~v~iw~~-~  481 (540)
                                  +.              ....+....+.+|...+..++|+|+++.|++       ++.|++|+||+. +
T Consensus       262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence                        00              0112556778899999999999999999984       566889999976 6


Q ss_pred             CcEEEEec---------CCCCCCCceEEEEeeCCCEEEEe------cCCeEEEEecC-CcEEEeee
Q psy1242         482 GDLLRSLD---------PPSGFASPESVVMSREGVIVVNY------ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       482 g~~~~~l~---------~~~~~~~v~~l~fspdg~~l~s~------~dg~I~lw~~~-g~~l~~~~  531 (540)
                      ++...++.         .+..  .|.+++|||||++++.+      .++.|++||.. ++.+..+.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~--rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~  405 (426)
T d1hzua2         342 LDAKYQVLPIAEWADLGEGAK--RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  405 (426)
T ss_dssp             TTSCCEEECHHHHHCCCSSCC--CEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCcCeEEeccchhcccCCCCc--cEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence            76554442         2233  57899999999976431      36889999988 55555543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=6.8e-16  Score=150.15  Aligned_cols=175  Identities=14%  Similarity=0.083  Sum_probs=116.9

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +.+++|+|++++ ||+|+.||+|+|||++++.....+.            ...+|.+.|++++|+|.   ++.+|++|+.
T Consensus        14 I~~l~fsp~~~~-L~s~s~Dg~v~iwd~~~~~~~~~~~------------~~~~h~~~V~~v~f~~~---~~~~l~sg~~   77 (342)
T d1yfqa_          14 ISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDLL------------QSLRYKHPLLCCNFIDN---TDLQIYVGTV   77 (342)
T ss_dssp             EEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEEEE------------EEEECSSCEEEEEEEES---SSEEEEEEET
T ss_pred             EEEEEEeCCCCE-EEEEECCCeEEEEEccCCCcceEEE------------EecCCCCCEEEEEEeCC---CCCEEEEccc
Confidence            789999999995 7999999999999998765433330            11479999999999983   4568999999


Q ss_pred             CCcEEEEEcCCCcccccCC------------------------------------C--------------C-C-------
Q psy1242         419 DCTVLLWHWNARTQSIVGE------------------------------------T--------------D-T-------  440 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~------------------------------------~--------------~-~-------  440 (540)
                      |++|++|++..........                                    .              . .       
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            9999999976432211000                                    0              0 0       


Q ss_pred             -------------------------CcceEEeccCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCc----------E
Q psy1242         441 -------------------------PTPRATLTGHEQPVTSVAIS-AELGLVVSGSQLGPVLVHTTFGD----------L  484 (540)
Q Consensus       441 -------------------------~~~~~~l~~h~~~V~~v~~s-pdg~~lasgs~Dg~v~iw~~~g~----------~  484 (540)
                                               .........+...+.++.+. .++..+++++.||.+.+|.....          .
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~  237 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence                                     00000011122234444444 35678899999999999853211          1


Q ss_pred             EEEec------CCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEeee
Q psy1242         485 LRSLD------PPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       485 ~~~l~------~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      .....      .|..  .|.+++|+|++++|++ +.||.|++||++ ++.+..+.
T Consensus       238 ~~~~~~~~~~~~~~~--~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         238 FRCHRLNLKDTNLAY--PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             EECCCCCTTCCSSCC--CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             eeeeeeccCCCcccc--cceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence            11111      1222  5789999999999998 568999999997 77777775

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.68  E-value=1.4e-16  Score=157.97  Aligned_cols=153  Identities=10%  Similarity=0.074  Sum_probs=123.7

Q ss_pred             EEEEEEEecCCCEEEEEEecCC-cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDN-SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG  416 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dg-sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg  416 (540)
                      .+.+++|+|||+.|++++..++ .|++||.++++.. .+               .+|.+.|.+++|+|    +|++|+++
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~---------------~~~~~~v~~~~~sp----dg~~l~~~  103 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF---------------EENLGNVFAMGVDR----NGKFAVVA  103 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC---------------CCCCCSEEEEEECT----TSSEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Ee---------------eCCCceEEeeeecc----ccccccee
Confidence            3678999999998655555443 7999999977654 34               58999999999999    99999999


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCcEEE
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGS----------QLGPVLVHTTFGDLLR  486 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs----------~Dg~v~iw~~~g~~~~  486 (540)
                      +.++.+++|+...           .++...+..|...+.+++|+|+|++|+.++          .++.+++|+..+....
T Consensus       104 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~  172 (360)
T d1k32a3         104 NDRFEIMTVDLET-----------GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  172 (360)
T ss_dssp             ETTSEEEEEETTT-----------CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             ccccccccccccc-----------cceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence            9999999999876           456677888999999999999999998654          3345788987655555


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      .+..+..  .+..++|+|+|+.|++ +.++.+.+|+..
T Consensus       173 ~~~~~~~--~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         173 AATTENS--HDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             ECSCSSS--BEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             eeccccc--ccccccccCCCCEEEEEeCCCceEccccc
Confidence            5555555  5788999999999987 567889999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.66  E-value=1.3e-15  Score=150.92  Aligned_cols=148  Identities=7%  Similarity=0.025  Sum_probs=121.6

Q ss_pred             EEec-CCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC-
Q psy1242         343 VTTV-DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC-  420 (540)
Q Consensus       343 ~~sp-dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg-  420 (540)
                      .||| ||++ +|+++ +|.|++||+.+++.++ +                +|.+.|++++|+|    ||++|++++.+. 
T Consensus         9 ~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~-~----------------~~~~~v~~~~~sp----Dg~~l~~~~~~~g   65 (360)
T d1k32a3           9 DFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK-V----------------PEPLRIRYVRRGG----DTKVAFIHGTREG   65 (360)
T ss_dssp             EEEECGGGC-EEEEE-TTEEEEECTTSSBEEE-C----------------SCCSCEEEEEECS----SSEEEEEEEETTE
T ss_pred             cccCCCCCE-EEEEE-CCeEEEEECCCCcEEE-c----------------cCCCCEEEEEECC----CCCEEEEEEcCCC
Confidence            4799 9995 67776 6899999998777653 3                6889999999999    999998877553 


Q ss_pred             -cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCce
Q psy1242         421 -TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       421 -tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~  498 (540)
                       .|++||..+            .....+..|...|.+++|+|+|++|++++.++.+++|+. +++....+..+..  .+.
T Consensus        66 ~~v~v~d~~~------------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  131 (360)
T d1k32a3          66 DFLGIYDYRT------------GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA--MIT  131 (360)
T ss_dssp             EEEEEEETTT------------CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--CCC
T ss_pred             CEEEEEECCC------------CcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc--ccc
Confidence             799999875            235677889999999999999999999999999999976 7777788887776  678


Q ss_pred             EEEEeeCCCEEEEec-----------CCeEEEEecCCcEE
Q psy1242         499 SVVMSREGVIVVNYE-----------RGHIAAFTMNGNRL  527 (540)
Q Consensus       499 ~l~fspdg~~l~s~~-----------dg~I~lw~~~g~~l  527 (540)
                      +++|+|+|++|+.+.           ++.+++|++.+...
T Consensus       132 ~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~  171 (360)
T d1k32a3         132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  171 (360)
T ss_dssp             CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             chhhccceeeeeeeccccccceeeccccceeeeccccCce
Confidence            999999999998631           34588888875443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2.9e-15  Score=144.55  Aligned_cols=116  Identities=10%  Similarity=0.119  Sum_probs=96.6

Q ss_pred             EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCc------cCCCc
Q psy1242         338 RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECN------ITADC  411 (540)
Q Consensus       338 ~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~------~~dg~  411 (540)
                      .+.+++|+|++++ |++|+.||.|++||+.+++.....              +.+|...|++++|+|..      ..++.
T Consensus       164 ~v~~~~~s~~~~~-l~~g~~dg~i~i~d~~~~~~~~~~--------------~~~h~~~v~~~~~~p~~~~~~~~~~~~~  228 (287)
T d1pgua2         164 KPSYISISPSETY-IAAGDVMGKILLYDLQSREVKTSR--------------WAFRTSKINAISWKPAEKGANEEEIEED  228 (287)
T ss_dssp             CEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEECC--------------SCCCSSCEEEEEECCCC------CCSCC
T ss_pred             ceeEEEeccCccc-cccccccccccceeeccccccccc--------------ccccccccceeeecccccccccccCCCC
Confidence            4788889999995 799999999999999988765432              16899999999998721      11457


Q ss_pred             EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy1242         412 FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHT  479 (540)
Q Consensus       412 ~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~  479 (540)
                      +|+||+.|++|++||++..          .+.+..+.+|...|++++|+|++ .+++++.||+|++|+
T Consensus       229 ~l~sgs~D~~i~iw~~~~~----------~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         229 LVATGSLDTNIFIYSVKRP----------MKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             EEEEEETTSCEEEEESSCT----------TCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             eeEeecCCCeEEEEECCCC----------CeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence            8999999999999998652          24677888999999999999986 588999999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.60  E-value=2.5e-13  Score=130.63  Aligned_cols=228  Identities=11%  Similarity=0.060  Sum_probs=153.2

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC-cCcc--eeeEEEEE
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN-FSQK--LRVRHNCF  342 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~-~~~~--~~v~~~~~  342 (540)
                      ++++++.+++|++||..+..........    .....+.+++|+.....+............... ....  ......++
T Consensus        46 l~v~~~~~~~i~v~d~~t~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (301)
T d1l0qa2          46 VYVANAHSNDVSIIDTATNNVIATVPAG----SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL  121 (301)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             EEEEECCCCEEEEEECCCCceeeeeecc----ccccccccccccccccccccccceeeecccccceeeeeccccccceEE
Confidence            3578888999999999876644332111    112346677887644433222222111111110 0000  01125678


Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC-Cc
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD-CT  421 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D-gt  421 (540)
                      +++|+|+.+++++..++.+.+|+..+++.+..+               . +...+.+++++|    ++..+++++.+ +.
T Consensus       122 ~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~----~~~~~~~~~~~~~~  181 (301)
T d1l0qa2         122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---------------S-VGRSPKGIAVTP----DGTKVYVANFDSMS  181 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------E-CCSSEEEEEECT----TSSEEEEEETTTTE
T ss_pred             EeecCCCeeeeeeccccceeeeeccccceeeec---------------c-cCCCceEEEeec----cccceeeecccccc
Confidence            889999988888888999999999999888777               3 345678999999    88888877765 55


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeC-CCcEEEEecCCCCCCCc
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ---LGPVLVHTT-FGDLLRSLDPPSGFASP  497 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~---Dg~v~iw~~-~g~~~~~l~~~~~~~~v  497 (540)
                      +.+|+...           .+....+. +...+..+++++++..++.++.   ++.|.+|+. +++++..+..+.   .+
T Consensus       182 ~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~  246 (301)
T d1l0qa2         182 ISVIDTVT-----------NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DP  246 (301)
T ss_dssp             EEEEETTT-----------TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SE
T ss_pred             cccccccc-----------eeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CE
Confidence            66676543           22333333 3455778999999997766543   467889976 788888887654   47


Q ss_pred             eEEEEeeCCCEEE-Ee-cCCeEEEEecC-CcEEEeeec
Q psy1242         498 ESVVMSREGVIVV-NY-ERGHIAAFTMN-GNRLRHESH  532 (540)
Q Consensus       498 ~~l~fspdg~~l~-s~-~dg~I~lw~~~-g~~l~~~~~  532 (540)
                      .+++|+|||++|+ ++ .++.|.+||++ |+.+.++..
T Consensus       247 ~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         247 AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            8999999999764 44 57999999987 888888763

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=2.5e-13  Score=140.27  Aligned_cols=197  Identities=12%  Similarity=0.010  Sum_probs=137.1

Q ss_pred             CcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEEE
Q psy1242         263 PSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNCF  342 (540)
Q Consensus       263 ~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  342 (540)
                      ...++|+.+.|++|.+||..+.+...                                     .+...    .  .+..+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~-------------------------------------~~~~g----~--~~~~v   67 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKT-------------------------------------VLDTG----Y--AVHIS   67 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEE-------------------------------------EEECS----S--CEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEE-------------------------------------EEeCC----C--CeeEE
Confidence            34567999999999999986533211                                     11100    0  14567


Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEE--EEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEeCC
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIV--QIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGSAD  419 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~--~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~D  419 (540)
                      +|||||++ +++++.|+++++||+.+++..  ..+            ....+|.+.+.+.+|+|    ||++| ++++.+
T Consensus        68 ~fSpDG~~-l~~~s~dg~v~~~d~~t~~~~~~~~i------------~~~~~~~~~~~s~~~Sp----DG~~l~vs~~~~  130 (432)
T d1qksa2          68 RLSASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEI------------KIGSEARSIETSKMEGW----EDKYAIAGAYWP  130 (432)
T ss_dssp             EECTTSCE-EEEEETTSEEEEEETTSSSCCEEEEE------------ECCSEEEEEEECCSTTC----TTTEEEEEEEET
T ss_pred             EECCCCCE-EEEEcCCCCEEEEEeeCCCceEEEEE------------ecCCCCCCeEEecccCC----CCCEEEEEcCCC
Confidence            89999997 578889999999999887643  333            11245777788888999    99976 778889


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEecc-----------CCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeC-CCcEEE
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTG-----------HEQPVTSVAISAELGLV-VSGSQLGPVLVHTT-FGDLLR  486 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-----------h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~-~g~~~~  486 (540)
                      ++|+|||..+.           +++..+.+           +......+.+++++..+ ++.+.++.|.+|+. +++...
T Consensus       131 ~~v~i~d~~t~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~  199 (432)
T d1qksa2         131 PQYVIMDGETL-----------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK  199 (432)
T ss_dssp             TEEEEEETTTC-----------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred             CeEEEEeCccc-----------cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence            99999998763           34444433           44566788999999865 56677889988865 555443


Q ss_pred             EecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC-CcEEEeee
Q psy1242         487 SLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~-g~~l~~~~  531 (540)
                      ....+.+. .+..++|+|+|++++++  .++.+.+++.. ++.+....
T Consensus       200 ~~~i~~g~-~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         200 TTEISAER-FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEEECCS-SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEEcccC-ccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            32222221 47899999999987764  36789999987 44444443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=5.8e-13  Score=129.80  Aligned_cols=237  Identities=11%  Similarity=0.002  Sum_probs=155.1

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCC---------CcCcce
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGD---------NFSQKL  335 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~---------~~~~~~  335 (540)
                      ++++++.|++|++||..+.+......-.+. ......+.+++||..+ ++++... ....+.+..         .-....
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~-~~~~~~i~~spDg~~l~v~~~~~~-~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSE-SLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTT-EEEEEETTTCCEEEEEECCBTTEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCC-CCCccEEEECCCCCEEEEEECCCC-eEEEEECCCCcEEEEEecCCCccc
Confidence            488999999999999988765443321101 1223467899999755 4443222 122222111         111111


Q ss_pred             eeEEEEEEEecCCCEEEEEEe-----------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEecc
Q psy1242         336 RVRHNCFVTTVDSRFLLACGF-----------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSE  404 (540)
Q Consensus       336 ~v~~~~~~~spdg~~llasgs-----------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp  404 (540)
                      ......++++|+++++++++.           .++.+.+||..+++....+               . +...+.+++++|
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------------~-~~~~~~~~~~s~  144 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---------------E-APRQITMLAWAR  144 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---------------E-CCSSCCCEEECT
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec---------------c-ccCCceEEEEcC
Confidence            122346788999997654433           4678999999999888777               3 445688999999


Q ss_pred             CccCCCcEEEEEeCCCcEEEEEcCCCccccc---C------------C-----C--------------------------
Q psy1242         405 CNITADCFIASGSADCTVLLWHWNARTQSIV---G------------E-----T--------------------------  438 (540)
Q Consensus       405 ~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~---~------------~-----~--------------------------  438 (540)
                          +|+++++++.+  +.+||.........   .            .     .                          
T Consensus       145 ----dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (337)
T d1pbyb_         145 ----DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYR  218 (337)
T ss_dssp             ----TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred             ----CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccC
Confidence                99999988754  67788654321100   0            0     0                          


Q ss_pred             --------CCCc-ceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCE
Q psy1242         439 --------DTPT-PRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVI  508 (540)
Q Consensus       439 --------~~~~-~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~  508 (540)
                              ..+. ....+..+...+.++++++++.+++++  ++.+++|+. +++.+..+....   .+.+++|+|||++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dG~~  293 (337)
T d1pbyb_         219 TGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGST  293 (337)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTSCE
T ss_pred             ccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCC---CEEEEEECCCCCE
Confidence                    0000 011223455667788888988887766  578999976 788888876543   5789999999999


Q ss_pred             EEEe-cCCeEEEEecC-CcEEEeee
Q psy1242         509 VVNY-ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       509 l~s~-~dg~I~lw~~~-g~~l~~~~  531 (540)
                      |+++ .++.|.+||.. ++.+.++.
T Consensus       294 l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         294 VWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCcEEEEEE
Confidence            8875 58999999987 88888775

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.48  E-value=4.8e-12  Score=121.35  Aligned_cols=234  Identities=10%  Similarity=0.037  Sum_probs=157.9

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCee-eccCCCCCCccccccCCCcC-cc--eeeEEEE
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILT-HPTSNNNAPVPKRHLGDNFS-QK--LRVRHNC  341 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~-~~g~~~~~~~~~~~~~~~~~-~~--~~v~~~~  341 (540)
                      +.|+.+.|++|.+||+.+++........    .....+.+++|+..+ +++..... ...+.+..... ..  .......
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g----~~p~~va~spdG~~l~v~~~~~~~-i~v~d~~t~~~~~~~~~~~~~~~   78 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSND-VSIIDTATNNVIATVPAGSSPQG   78 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSEEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECC----CCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCceeeeeeccccccc
Confidence            4677888999999999887644433322    122347899998754 44422221 12222211100 00  0112467


Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE-EEeCCC
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA-SGSADC  420 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~-sgs~Dg  420 (540)
                      +++++++..+++++..++.+.+|+..+++....+               . +...+.+++++|    +|..++ ++..++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~----dg~~~~~~~~~~~  138 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV---------------K-TGKSPLGLALSP----DGKKLYVTNNGDK  138 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------E-CSSSEEEEEECT----TSSEEEEEETTTT
T ss_pred             cccccccccccccccccceeeecccccceeeeec---------------c-ccccceEEEeec----CCCeeeeeecccc
Confidence            7889999988888888889999999998888777               3 445678899999    887765 556788


Q ss_pred             cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEeC-CCcEEEEecCCCCCCCce
Q psy1242         421 TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGP-VLVHTT-FGDLLRSLDPPSGFASPE  498 (540)
Q Consensus       421 tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~-v~iw~~-~g~~~~~l~~~~~~~~v~  498 (540)
                      .+.+|+..+           ...+..+. +...+.+++++|++..+++++.+.. +.+|.. ..+....+..+.   .+.
T Consensus       139 ~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  203 (301)
T d1l0qa2         139 TVSVINTVT-----------KAVINTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA---APS  203 (301)
T ss_dssp             EEEEEETTT-----------TEEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---EEE
T ss_pred             ceeeeeccc-----------cceeeecc-cCCCceEEEeeccccceeeecccccccccccccceeeeecccccC---Ccc
Confidence            999999776           33444544 3456889999999998888877655 455655 455555555544   468


Q ss_pred             EEEEeeCCCEEEEe----cCCeEEEEecC-CcEEEeeecCCcceec
Q psy1242         499 SVVMSREGVIVVNY----ERGHIAAFTMN-GNRLRHESHNDNLQKT  539 (540)
Q Consensus       499 ~l~fspdg~~l~s~----~dg~I~lw~~~-g~~l~~~~~~~~V~~v  539 (540)
                      .++|+++|..++.+    .++.|.+||+. ++.+..+.+...+.+|
T Consensus       204 ~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~v  249 (301)
T d1l0qa2         204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI  249 (301)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred             eeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEE
Confidence            89999999987652    24789999987 7777777666666555

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.48  E-value=2.3e-12  Score=125.93  Aligned_cols=79  Identities=10%  Similarity=0.029  Sum_probs=63.5

Q ss_pred             cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe-cCCeEEEEecC-Cc
Q psy1242         449 GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY-ERGHIAAFTMN-GN  525 (540)
Q Consensus       449 ~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~-~dg~I~lw~~~-g~  525 (540)
                      .|...+.++.+++++..++++. ++.+.+|+. +++.++.+....   .+.+++|+|||+.|+++ .++.|.+||+. ++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~---~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         249 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             cccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCC---CEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            4566777888888888777766 457888876 888888876543   57899999999999884 58999999998 88


Q ss_pred             EEEeee
Q psy1242         526 RLRHES  531 (540)
Q Consensus       526 ~l~~~~  531 (540)
                      .+.++.
T Consensus       325 ~i~~i~  330 (346)
T d1jmxb_         325 KVKNIK  330 (346)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888886

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.5e-11  Score=119.89  Aligned_cols=237  Identities=11%  Similarity=0.124  Sum_probs=137.3

Q ss_pred             cEEEEEccCcceEEEEcCCCCCc---ccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCc-------
Q psy1242         264 SVVTVTANHQFAINRWNPDYAAS---IQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQ-------  333 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~---~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~-------  333 (540)
                      ..+.|+++.|.+|++|++.....   .....|.+.    ...+.|++||..+.++.........+.+......       
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~----v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQ----VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSC----CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCC----EeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            35678899999999999865432   222334433    3467899999766443322222233333211100       


Q ss_pred             ceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         334 KLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       334 ~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                      ........++++|||++|++++..++++.+|+...........             ...+...+.++.++|    +++++
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~s~----d~~~~  142 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD-------------VVEGLDGCHSANISP----DNRTL  142 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE-------------EECCCTTBCCCEECT----TSSEE
T ss_pred             ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccc-------------ccCCCccceEEEeee----cceee
Confidence            0111245688999999876666678899999988766544331             134556677777888    77777


Q ss_pred             EEEeC-CCcEEEEEcCCCccccc----------CC--------C------------------------CCCcceEEec--
Q psy1242         414 ASGSA-DCTVLLWHWNARTQSIV----------GE--------T------------------------DTPTPRATLT--  448 (540)
Q Consensus       414 ~sgs~-DgtV~lWd~~~~~~~~~----------~~--------~------------------------~~~~~~~~l~--  448 (540)
                      ++++. +..+.+|+.........          +.        .                        ........+.  
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence            66664 44677777543211100          00        0                        0000001110  


Q ss_pred             ----cCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeC--CCcEEEE--ecCCCCCCCceEEEEeeCCCEEEEe--cCCeE
Q psy1242         449 ----GHEQPVTSVAISAELGLVVS-GSQLGPVLVHTT--FGDLLRS--LDPPSGFASPESVVMSREGVIVVNY--ERGHI  517 (540)
Q Consensus       449 ----~h~~~V~~v~~spdg~~las-gs~Dg~v~iw~~--~g~~~~~--l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I  517 (540)
                          ........+++++++++++. +..++.+.+|..  .+.....  ......  .+.+++|+|||++|+++  .++.|
T Consensus       223 ~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~a~spDGk~l~va~~~~~~v  300 (333)
T d1ri6a_         223 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAGQKSHHI  300 (333)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEECTTTCEE
T ss_pred             ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCC--CeeEEEEeCCCCEEEEEECCCCeE
Confidence                12234567889999986554 556778888743  3332222  222223  46889999999988764  36899


Q ss_pred             EEEecC
Q psy1242         518 AAFTMN  523 (540)
Q Consensus       518 ~lw~~~  523 (540)
                      .+|+++
T Consensus       301 ~v~~id  306 (333)
T d1ri6a_         301 SVYEIV  306 (333)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=1.6e-12  Score=134.03  Aligned_cols=150  Identities=9%  Similarity=-0.091  Sum_probs=115.1

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      ++++.+.||+|.|||.++++++..+               ..| ..+..++|||    ||+++++++.|++|++||+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~---------------~~g-~~~~~v~fSp----DG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVL---------------DTG-YAVHISRLSA----SGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEE---------------ECS-SCEEEEEECT----TSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEE---------------eCC-CCeeEEEECC----CCCEEEEEcCCCCEEEEEeeCC
Confidence            4689999999999999999999998               555 3689999999    9999999999999999998764


Q ss_pred             cccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeC-CCcEEEEecCCCCC---------CCceE
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTT-FGDLLRSLDPPSGF---------ASPES  499 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~-~g~~~~~l~~~~~~---------~~v~~  499 (540)
                      ....      ...+....+|.+.+.+++|+|||++| ++++.+++|++|+. +++++..+..+...         .....
T Consensus        94 ~~~~------~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
T d1qksa2          94 EPTT------VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  167 (432)
T ss_dssp             SCCE------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             CceE------EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeE
Confidence            3211      01122334566677777889999975 78888999999976 88888877654321         13457


Q ss_pred             EEEeeCCCEEEE--ecCCeEEEEecC-CcE
Q psy1242         500 VVMSREGVIVVN--YERGHIAAFTMN-GNR  526 (540)
Q Consensus       500 l~fspdg~~l~s--~~dg~I~lw~~~-g~~  526 (540)
                      +.++|+|..++.  .+++.|.+|+.. ++.
T Consensus       168 v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~  197 (432)
T d1qksa2         168 ILASHYRPEFIVNVKETGKILLVDYTDLNN  197 (432)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             EEECCCCCEEEEEEccCCeEEEEEccCCCc
Confidence            889999987654  357899999875 443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.31  E-value=7e-12  Score=128.44  Aligned_cols=145  Identities=10%  Similarity=-0.029  Sum_probs=103.6

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLLWHWNAR  430 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~  430 (540)
                      ++++++.||+|+|||+.+++.+.++               ..| ..+..++|||    ||++|++++.|++|++||+.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l---------------~~g-~~~~~vafSP----DGk~l~~~~~d~~v~vwd~~t~   93 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVI---------------DTG-YAVHISRMSA----SGRYLLVIGRDARIDMIDLWAK   93 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEE---------------ECC-SSEEEEEECT----TSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEE---------------eCC-CCeeEEEECC----CCCEEEEEeCCCCEEEEEccCC
Confidence            4688889999999999999999998               555 4589999999    9999999999999999999874


Q ss_pred             cccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeC-CCcEEEEecCCCCCC---------CceE
Q psy1242         431 TQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVV-SGSQLGPVLVHTT-FGDLLRSLDPPSGFA---------SPES  499 (540)
Q Consensus       431 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~la-sgs~Dg~v~iw~~-~g~~~~~l~~~~~~~---------~v~~  499 (540)
                      +...      ...+....+|...+.+++|+|||++++ ++..++++++|+. ++.++..+..+....         ....
T Consensus        94 ~~~~------~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          94 EPTK------VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             SCEE------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             ceeE------EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence            4211      001222346777778888999999865 4557899999976 777777776554310         2234


Q ss_pred             EEEeeCCCEEEEe--cCCeEEEEe
Q psy1242         500 VVMSREGVIVVNY--ERGHIAAFT  521 (540)
Q Consensus       500 l~fspdg~~l~s~--~dg~I~lw~  521 (540)
                      +++++++..++..  +.+.+.+++
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEecCCCCeEEEEE
Confidence            5556666655542  234444443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.30  E-value=5.4e-10  Score=110.85  Aligned_cols=253  Identities=9%  Similarity=-0.065  Sum_probs=142.3

Q ss_pred             ccCcceEEEEcCCCCCcccCCC-CcCC---CCCCCCCccccCCCCeeeccC-CCCCCccccccCCCcCcceeeEEEEEEE
Q psy1242         270 ANHQFAINRWNPDYAASIQSPS-YAET---PGSPPGNLPLTLDPILTHPTS-NNNAPVPKRHLGDNFSQKLRVRHNCFVT  344 (540)
Q Consensus       270 ~s~D~tv~~W~~~~~~~~~~~~-~~~~---v~~~~~~~~~s~D~~l~~~g~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~  344 (540)
                      ++.++.|++||..+.+...... +...   +......+.+++|+..+.... ....................-...++++
T Consensus        93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (373)
T d2madh_          93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHI  172 (373)
T ss_pred             cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEE
Confidence            3567899999998776433221 1111   122223466777775443221 1111111111111100011112567888


Q ss_pred             ecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCCcEEE
Q psy1242         345 TVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADCTVLL  424 (540)
Q Consensus       345 spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~l  424 (540)
                      +|+|+.++++++.|+++.+|+...++.......+...         .++......+.+++    ++ .++..+.++++.+
T Consensus       173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~-~~~~~~~~~~v~~  238 (373)
T d2madh_         173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT---------AAQNLLTQPAQANK----SG-RIVWPVYSGKILQ  238 (373)
T ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc---------cCccceeeeEEECC----Cc-eEEEecCCceEEE
Confidence            9999988899999999999999988877665221110         12222334455555    44 4556678899999


Q ss_pred             EEcCCCcccccCCC-CCCcceEEeccCCCCEEEEEEcCCCCE----------EEEEeCCCcEEEEeC-CCcEEEEecCCC
Q psy1242         425 WHWNARTQSIVGET-DTPTPRATLTGHEQPVTSVAISAELGL----------VVSGSQLGPVLVHTT-FGDLLRSLDPPS  492 (540)
Q Consensus       425 Wd~~~~~~~~~~~~-~~~~~~~~l~~h~~~V~~v~~spdg~~----------lasgs~Dg~v~iw~~-~g~~~~~l~~~~  492 (540)
                      |+............ ..................+++++++..          +++...++.+.+|+. +++.+..+....
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~  318 (373)
T d2madh_         239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH  318 (373)
T ss_pred             EEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC
Confidence            99765331110000 000000000011122334455555544          445566677877755 888888886544


Q ss_pred             CCCCceEEEEeeCCCEE--EE-ecCCeEEEEecC-CcEEEeee-cCCcceec
Q psy1242         493 GFASPESVVMSREGVIV--VN-YERGHIAAFTMN-GNRLRHES-HNDNLQKT  539 (540)
Q Consensus       493 ~~~~v~~l~fspdg~~l--~s-~~dg~I~lw~~~-g~~l~~~~-~~~~V~~v  539 (540)
                         .+..++|+|||+.+  ++ +.++.|++||+. |+.+.++. +....+.|
T Consensus       319 ---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l  367 (373)
T d2madh_         319 ---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             ---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence               57899999999843  34 468999999987 99999886 55554444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.28  E-value=8.1e-11  Score=114.16  Aligned_cols=149  Identities=7%  Similarity=0.023  Sum_probs=113.0

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEeCCCcEEEEEcCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGSADCTVLLWHWNA  429 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~DgtV~lWd~~~  429 (540)
                      .+++++.|++|+|||+.+++.+..+..             ..+...+.+++++|    ||+++ ++++.++.|.+||+.+
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~-------------~~~~~~~~~i~~sp----Dg~~l~v~~~~~~~v~v~D~~t   65 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITI-------------ADAGPTPMVPMVAP----GGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEEC-------------TTCTTCCCCEEECT----TSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEEC-------------CCCCCCccEEEECC----CCCEEEEEECCCCeEEEEECCC
Confidence            478999999999999999999988832             23445678999999    99987 5677899999999877


Q ss_pred             CcccccCCCCCCcceEEeccCCC-----CEEEEEEcCCCCEEEEEeC------------CCcEEEEeC-CCcEEEEecCC
Q psy1242         430 RTQSIVGETDTPTPRATLTGHEQ-----PVTSVAISAELGLVVSGSQ------------LGPVLVHTT-FGDLLRSLDPP  491 (540)
Q Consensus       430 ~~~~~~~~~~~~~~~~~l~~h~~-----~V~~v~~spdg~~lasgs~------------Dg~v~iw~~-~g~~~~~l~~~  491 (540)
                                 ++.+..+..+..     .+..++++|+++.+++++.            ++.+.+|+. +++.+..+..+
T Consensus        66 -----------~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  134 (337)
T d1pbyb_          66 -----------GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP  134 (337)
T ss_dssp             -----------CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC
T ss_pred             -----------CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc
Confidence                       345555554432     3457899999999887764            456667755 77777777765


Q ss_pred             CCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee
Q psy1242         492 SGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       492 ~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      .   .+..++|+|+|+++++++ +.+.+|++. ++.+....
T Consensus       135 ~---~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~  171 (337)
T d1pbyb_         135 R---QITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             S---SCCCEEECTTSSCEEEES-SSEEEEETTTTEEEEEEC
T ss_pred             C---CceEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEee
Confidence            4   468899999999998874 457789987 55555554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.18  E-value=9.7e-11  Score=114.07  Aligned_cols=157  Identities=9%  Similarity=-0.033  Sum_probs=108.4

Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEeCCCc
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGSADCT  421 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs~Dgt  421 (540)
                      ++++++++ +++++.|++|.+||+.+++.+.++.              -.|...+.+++|+|    ||+++ ++++.++.
T Consensus         3 a~~~~~~~-l~~~~~~~~v~v~D~~t~~~~~t~~--------------~~~~~~p~~l~~sp----DG~~l~v~~~~~~~   63 (346)
T d1jmxb_           3 ALKAGHEY-MIVTNYPNNLHVVDVASDTVYKSCV--------------MPDKFGPGTAMMAP----DNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCTTCEE-EEEEETTTEEEEEETTTTEEEEEEE--------------CSSCCSSCEEEECT----TSSEEEEEETTTTE
T ss_pred             cCCCCCcE-EEEEcCCCEEEEEECCCCCEEEEEE--------------cCCCCCcceEEECC----CCCEEEEEECCCCc
Confidence            56889996 7899999999999999999998872              14566788999999    99887 56668999


Q ss_pred             EEEEEcCCCcccccCCCCCCcceEEeccC------CCCEEEEEEcCCCCEEEEEe------------CCCcEEEEeC-CC
Q psy1242         422 VLLWHWNARTQSIVGETDTPTPRATLTGH------EQPVTSVAISAELGLVVSGS------------QLGPVLVHTT-FG  482 (540)
Q Consensus       422 V~lWd~~~~~~~~~~~~~~~~~~~~l~~h------~~~V~~v~~spdg~~lasgs------------~Dg~v~iw~~-~g  482 (540)
                      |.+||+.+.           +.+..+...      ...+..++++|||+++++++            .++.+.+|+. ++
T Consensus        64 v~~~d~~t~-----------~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          64 IYGIDLDTC-----------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             EEEEETTTT-----------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             EEEEeCccC-----------eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence            999998763           233333221      12345789999999887765            3555666643 44


Q ss_pred             cEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecC-CcEEEeee
Q psy1242         483 DLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       483 ~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~-g~~l~~~~  531 (540)
                      +....+..+.....+..+.+++++.+++.+  +.+.+|++. ++.+..+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  180 (346)
T d1jmxb_         133 LEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALP  180 (346)
T ss_dssp             GGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEEC
T ss_pred             eeeeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEe
Confidence            433222211111134667778888777664  458889876 77777665

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=2.5e-10  Score=110.84  Aligned_cols=146  Identities=14%  Similarity=0.122  Sum_probs=101.4

Q ss_pred             EEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-CCCcEEEEEcCC
Q psy1242         351 LLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-ADCTVLLWHWNA  429 (540)
Q Consensus       351 llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-~DgtV~lWd~~~  429 (540)
                      ++++++.|++|++|++++...+..+.            . ..|.+.|.+|+|+|    ||++|++++ .|++|++|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~------------~-~~~~~~v~~la~sp----DG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQ------------V-VDVPGQVQPMVVSP----DKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEE------------E-EECSSCCCCEEECT----TSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEE------------E-EcCCCCEeEEEEeC----CCCEEEEEECCCCeEEEEEEeC
Confidence            45788899999999997654333330            0 35788999999999    999985555 589999999876


Q ss_pred             CcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeC-CCcEE--EEecCCCCCCCceEEEEeeC
Q psy1242         430 RTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVHTT-FGDLL--RSLDPPSGFASPESVVMSRE  505 (540)
Q Consensus       430 ~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~-~g~~~--~~l~~~~~~~~v~~l~fspd  505 (540)
                      ....        ........+...+.+++|+|||++|++++. ++.+.+|.. .....  .....+..  .+.++.++|+
T Consensus        69 ~~~~--------~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~v~~s~d  138 (333)
T d1ri6a_          69 DDGA--------LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD--GCHSANISPD  138 (333)
T ss_dssp             TTCC--------EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT--TBCCCEECTT
T ss_pred             CCCc--------EEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCc--cceEEEeeec
Confidence            3321        011112234455678999999999988885 667777754 33222  22333333  5788999999


Q ss_pred             CCEEEEec--CCeEEEEecC
Q psy1242         506 GVIVVNYE--RGHIAAFTMN  523 (540)
Q Consensus       506 g~~l~s~~--dg~I~lw~~~  523 (540)
                      +++++.++  +..|.+|+..
T Consensus       139 ~~~~~~~~~~~~~i~~~~~~  158 (333)
T d1ri6a_         139 NRTLWVPALKQDRICLFTVS  158 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEEC
T ss_pred             ceeeeccccccceeeEEEec
Confidence            99888753  5678888865

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.11  E-value=3.1e-10  Score=111.59  Aligned_cols=226  Identities=12%  Similarity=0.018  Sum_probs=129.1

Q ss_pred             ccCcceEEEEcCCCCCcccCC----CCcCCCCCCCCCccccCCCCeeeccCCCC-CCccccccCCC-cCcceee------
Q psy1242         270 ANHQFAINRWNPDYAASIQSP----SYAETPGSPPGNLPLTLDPILTHPTSNNN-APVPKRHLGDN-FSQKLRV------  337 (540)
Q Consensus       270 ~s~D~tv~~W~~~~~~~~~~~----~~~~~v~~~~~~~~~s~D~~l~~~g~~~~-~~~~~~~~~~~-~~~~~~v------  337 (540)
                      ++.|+.|++||..+.+.....    .+...+......+.+++|+..+...+... ........... ....+.+      
T Consensus        74 g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          74 GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            456889999999887643322    12222333344577899986554432111 11111111100 0000000      


Q ss_pred             ----EEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE
Q psy1242         338 ----RHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI  413 (540)
Q Consensus       338 ----~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l  413 (540)
                          ....+++++|++.+++....++.+.+++.....                    ..+...+.+..+.+    ++..+
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~----~~~~~  209 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------------------PEDEFLINHPAYSQ----KAGRL  209 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS--------------------CTTSCBCSCCEEET----TTTEE
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc--------------------ceecceeeeccccC----CCCeE
Confidence                012234445555443333333344444333221                    23445566677777    78889


Q ss_pred             EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCC----------CCEEEEEEcCCCCEEEEEeCCC----------
Q psy1242         414 ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHE----------QPVTSVAISAELGLVVSGSQLG----------  473 (540)
Q Consensus       414 ~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~----------~~V~~v~~spdg~~lasgs~Dg----------  473 (540)
                      +.++.++++.+|++.......         +....++.          .....+++++++..++..+.++          
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         210 VWPTYTGKIHQIDLSSGDAKF---------LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             EEEBTTSEEEEEECTTSSCEE---------CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             EEecCCCeEEEEecCCCcEEE---------EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence            999999999999987643211         11111111          1223478899998877655433          


Q ss_pred             cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCC--EEEEe-cCCeEEEEecC-CcEEEeee
Q psy1242         474 PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGV--IVVNY-ERGHIAAFTMN-GNRLRHES  531 (540)
Q Consensus       474 ~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~--~l~s~-~dg~I~lw~~~-g~~l~~~~  531 (540)
                      .|.+|+. +++.+.++..+.   .+.+++|+|||+  +++++ .++.|.+||+. |+.++++.
T Consensus       281 ~v~v~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             eEEEEeCCCCcEEEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            5778865 788888876543   478999999998  33443 47999999986 99998885

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.83  E-value=8e-08  Score=94.65  Aligned_cols=149  Identities=13%  Similarity=-0.047  Sum_probs=103.7

Q ss_pred             EEEEEEecCCCEEEEEE----ecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEE
Q psy1242         339 HNCFVTTVDSRFLLACG----FWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       339 ~~~~~~spdg~~llasg----s~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      ...++++|||+.++++.    +.++.|.+||..+++.+..+               .++..  ..++|+|    ||++|+
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~---------------~~~~~--~~~a~Sp----DG~~l~   81 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV---------------NGGFL--PNPVAAH----SGSEFA   81 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE---------------eCCCC--ccEEEcC----CCCEEE
Confidence            45667899999865552    23467999999999999888               44443  3689999    999998


Q ss_pred             EEe----------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCE-------EEEEEcCCCCEEEEEe--CCCcE
Q psy1242         415 SGS----------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPV-------TSVAISAELGLVVSGS--QLGPV  475 (540)
Q Consensus       415 sgs----------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V-------~~v~~spdg~~lasgs--~Dg~v  475 (540)
                      +++          .++.|.+||..+           ++++..+..+....       ..+.|+++++.++...  .++.+
T Consensus        82 va~~~~~~~~~~~~~~~v~v~D~~t-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~  150 (373)
T d2madh_          82 LASTSFSRIAKGKRTDYVEVFDPVT-----------FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV  150 (373)
T ss_pred             EEeecCCcccccccceEEEEEECCC-----------CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCce
Confidence            875          467899999876           34455555544433       3568888888665544  45566


Q ss_pred             EEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEE--ecCCeEEEEecCCc
Q psy1242         476 LVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVN--YERGHIAAFTMNGN  525 (540)
Q Consensus       476 ~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s--~~dg~I~lw~~~g~  525 (540)
                      .+|+. .++......      .+.++.++|+|+.++.  +.|+.+.+|+..+.
T Consensus       151 ~~~~~~~~~~~~~~~------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         151 GLVVQGGSSDDQLLS------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             EEeeccCCeEEEEec------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence            77755 444443332      3467899999986543  56899999998743

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.77  E-value=2.2e-08  Score=102.90  Aligned_cols=142  Identities=13%  Similarity=-0.028  Sum_probs=104.5

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC--
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA--  418 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~--  418 (540)
                      .+.|.+++++ +..  .|+.+.+||+.+++....+..+.          +..|...|.++.|||    ||++|+.++.  
T Consensus        21 ~~~W~~d~~~-~~~--~~~~~~~~~~~t~~~~~~~~~~~----------~~~~~~~i~~~~~Sp----Dg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHEY-LYK--QENNILVFNAEYGNSSVFLENST----------FDEFGHSINDYSISP----DGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSEE-EEE--SSSCEEEEETTTCCEEEEECTTT----------TTTSSSCCCEEEECT----TSSEEEEEEEEE
T ss_pred             CCEeCCCCEE-EEE--cCCcEEEEECCCCCEEEEEchhh----------hhhccCccceeEECC----CCCEEEEEECCc
Confidence            4567889985 443  48899999999998876663322          245678899999999    9999998853  


Q ss_pred             -------CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecC
Q psy1242         419 -------DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDP  490 (540)
Q Consensus       419 -------DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~  490 (540)
                             ++.+.|||+.++            .+..+..|...+..+.|||||+.||... ++.+.+|.. +|+..+....
T Consensus        84 ~~~r~s~~~~~~l~d~~~~------------~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKR------------QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTT------------EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSC
T ss_pred             ceeeeccCceEEEEECCCC------------cccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeec
Confidence                   567889998763            2455778889999999999999999865 678888865 5555443332


Q ss_pred             CCCC----------------CCceEEEEeeCCCEEEEe
Q psy1242         491 PSGF----------------ASPESVVMSREGVIVVNY  512 (540)
Q Consensus       491 ~~~~----------------~~v~~l~fspdg~~l~s~  512 (540)
                      +...                .....+.|||||+.|+..
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            2110                124568899999999984

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.76  E-value=8.5e-08  Score=97.29  Aligned_cols=211  Identities=9%  Similarity=0.023  Sum_probs=130.1

Q ss_pred             cEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCC---Cc-CcceeeEE
Q psy1242         264 SVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGD---NF-SQKLRVRH  339 (540)
Q Consensus       264 ~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~---~~-~~~~~v~~  339 (540)
                      ...++|++.++.|++|++.+......+            -.|++|+...... +.   ...+.+..   .. .....-..
T Consensus        11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~I------------pVfspd~~~g~g~-~~---es~~vl~~~~~~~~gd~hhP~~   74 (441)
T d1qnia2          11 YYGFWSGGHQGEVRVLGVPSMRELMRI------------PVFNVDSATGWGI-TN---ESKEILGGDQQYLNGDCHHPHI   74 (441)
T ss_dssp             EEEEEECBTTCCEEEEEETTTEEEEEE------------CSSSBCTTTCTTT-SH---HHHHHHCSSSCCSCCCBCCCEE
T ss_pred             EEEEEeCCCCCcEEEEeCCCCcEEEEE------------EeEcCCCCEEEEE-CC---ccceEEecccccccCcccCCCc
Confidence            456889999999999998654422211            1256666432211 00   11111100   00 00001123


Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCc--EEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADC--FIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~--~l~sgs  417 (540)
                      .+...+|||++|+++...+++|.++|+++++..+.++              -.+...+..++++|    +|+  +++.++
T Consensus        75 s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~--------------iP~g~gphgi~~sp----dg~t~YV~~~~  136 (441)
T d1qnia2          75 SMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITH--------------IPNVQAIHGLRLQK----VPKTNYVFCNA  136 (441)
T ss_dssp             EEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE--------------CTTCCCEEEEEECC----SSBCCEEEEEE
T ss_pred             ceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEe--------------cCCCCCccceEEec----cCCEEEEEecc
Confidence            4445689999988888899999999999999887662              24567788999999    888  555555


Q ss_pred             CCCc-----------------EEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC--------
Q psy1242         418 ADCT-----------------VLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL--------  472 (540)
Q Consensus       418 ~Dgt-----------------V~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D--------  472 (540)
                      .+..                 +..+|..+           .+....+... .....++++|+|+++++.+.+        
T Consensus       137 ~~~v~~~~dg~~~~~~~~~~~~~~iD~~t-----------~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id  204 (441)
T d1qnia2         137 EFVIPQPNDGTDFSLDNSYTMFTAIDAET-----------MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLA  204 (441)
T ss_dssp             CSCEESSCSSSCCCGGGEEEEEEEEETTT-----------CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             CCcccccCcccccccccccceEEeecCcc-----------ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEe
Confidence            4432                 23344333           2222333222 245678999999988877644        


Q ss_pred             ---------------------------------CcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCe
Q psy1242         473 ---------------------------------GPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGH  516 (540)
Q Consensus       473 ---------------------------------g~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~  516 (540)
                                                       +.+.++.. ..+.++.+..+.   .+..++++|||++++++  .+++
T Consensus       205 ~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~t  281 (441)
T d1qnia2         205 GTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPT  281 (441)
T ss_dssp             HHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSB
T ss_pred             ccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC---CccCceECCCCCEEEEeCCcCCc
Confidence                                             23344533 445667776655   36889999999998774  4799


Q ss_pred             EEEEecC
Q psy1242         517 IAAFTMN  523 (540)
Q Consensus       517 I~lw~~~  523 (540)
                      |.+||+.
T Consensus       282 vsv~d~~  288 (441)
T d1qnia2         282 VSVIAID  288 (441)
T ss_dssp             EEEEEGG
T ss_pred             EEEEEee
Confidence            9999964

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=2.9e-08  Score=98.57  Aligned_cols=75  Identities=8%  Similarity=0.037  Sum_probs=53.3

Q ss_pred             EEEEcCCCCEEEEEeCCC---------cEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCC-EE-EE-ecCCeEEEEec
Q psy1242         456 SVAISAELGLVVSGSQLG---------PVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGV-IV-VN-YERGHIAAFTM  522 (540)
Q Consensus       456 ~v~~spdg~~lasgs~Dg---------~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~-~l-~s-~~dg~I~lw~~  522 (540)
                      .+++++++..++....++         .|.+|+. +++.+.++....   .+.+++|+|||+ +| ++ +.++.|.+||.
T Consensus       268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            477888888765543222         3666765 788887776443   578999999997 33 33 35799999998


Q ss_pred             C-CcEEEeeecC
Q psy1242         523 N-GNRLRHESHN  533 (540)
Q Consensus       523 ~-g~~l~~~~~~  533 (540)
                      . |+.+.++...
T Consensus       345 ~tgk~~~~i~~g  356 (368)
T d1mdah_         345 ASDQDQSSVELD  356 (368)
T ss_dssp             SSCEEEEECCCC
T ss_pred             CCCCEEEEEECC
Confidence            7 8988888643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.66  E-value=4.3e-08  Score=95.70  Aligned_cols=216  Identities=12%  Similarity=0.015  Sum_probs=122.1

Q ss_pred             EEEEccCcceEEEEcCCCCCcccCCCCcCC----CCCCCCCccccCCCCeeeccCCCCCCccccccCCCcCcceeeEEEE
Q psy1242         266 VTVTANHQFAINRWNPDYAASIQSPSYAET----PGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFSQKLRVRHNC  341 (540)
Q Consensus       266 ~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~----v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~  341 (540)
                      .+++.+.+..+.+|+..+............    .......+.+++|+..+................. ..........+
T Consensus       121 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~  199 (355)
T d2bbkh_         121 LFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV-FHPEDEFLINH  199 (355)
T ss_dssp             EEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-CSCTTSCBCSC
T ss_pred             EEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc-ccceecceeee
Confidence            344556678899999877553322111000    0111223567777765543322222211111111 11111111233


Q ss_pred             EEEecCCCEEEEEEecCCcEEEEEccCCeEEE--EEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         342 FVTTVDSRFLLACGFWDNSFRVFSTDNARIVQ--IIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       342 ~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~--~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      .++.+++.. ++.++.++.+.+|++..++...  ....+.......     .........+++++    ++..++..+.+
T Consensus       200 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~----d~~~~~~~~~~  269 (355)
T d2bbkh_         200 PAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD-----GWRPGGWQQVAYHR----ALDRIYLLVDQ  269 (355)
T ss_dssp             CEEETTTTE-EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT-----TEEECSSSCEEEET----TTTEEEEEEEE
T ss_pred             ccccCCCCe-EEEecCCCeEEEEecCCCcEEEEeccCCcccceEee-----eeeccceEEEEEeC----CCCeEEEEecc
Confidence            455777775 5777889999999998776432  111111000000     00112234578888    88877665543


Q ss_pred             ----------CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeC-CCcEEE
Q psy1242         420 ----------CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG--LVVSGSQLGPVLVHTT-FGDLLR  486 (540)
Q Consensus       420 ----------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~--~lasgs~Dg~v~iw~~-~g~~~~  486 (540)
                                ..|.+||..+           ++.+..+. +...+.+++|+|||+  ++++++.|+.|.||+. +|+.++
T Consensus       270 ~~~~~~~~~~~~v~v~d~~t-----------~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         270 RDEWRHKTASRFVVVLDAKT-----------GERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  337 (355)
T ss_dssp             CCTTCTTSCEEEEEEEETTT-----------CCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CCceeecCCCCeEEEEeCCC-----------CcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE
Confidence                      3689999776           34455554 335578999999997  4567788999999976 999999


Q ss_pred             EecCCCCCCCceEEEEeeCC
Q psy1242         487 SLDPPSGFASPESVVMSREG  506 (540)
Q Consensus       487 ~l~~~~~~~~v~~l~fspdg  506 (540)
                      ++..+..  .+..+.+.++|
T Consensus       338 ~i~~~G~--~p~~i~~~d~~  355 (355)
T d2bbkh_         338 SVNQLGH--GPQVITTADMG  355 (355)
T ss_dssp             EECCCCS--SCCEEECCCCC
T ss_pred             EEeCcCC--CccEEEeCCCC
Confidence            9987655  45666665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.65  E-value=3e-06  Score=80.57  Aligned_cols=154  Identities=10%  Similarity=0.128  Sum_probs=114.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++.++|. ++++....+.+.+++.. ++.+..+..             ..+......+++.+    +|+.+++...
T Consensus       116 p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~-------------~~~~~~~~~i~~d~----~g~i~v~d~~  176 (279)
T d1q7fa_         116 PRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGC-------------SKHLEFPNGVVVND----KQEIFISDNR  176 (279)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEEC-------------TTTCSSEEEEEECS----SSEEEEEEGG
T ss_pred             cceeccccCCc-EEEEeeccceeeEeccC-Cceeecccc-------------cccccccceeeecc----ceeEEeeecc
Confidence            45677788888 45666666778888765 666655511             34566788899998    8988888888


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCcEEEEecCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQ-LGPVLVHTTFGDLLRSLDPPSGFA  495 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw~~~g~~~~~l~~~~~~~  495 (540)
                      .+.|.+++...            +.+..+  .+......+|++.++|+++++-+. ++.|.+++.+|+++.++.......
T Consensus       177 ~~~V~~~d~~G------------~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~  244 (279)
T d1q7fa_         177 AHCVKVFNYEG------------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHA  244 (279)
T ss_dssp             GTEEEEEETTC------------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCS
T ss_pred             ccceeeeecCC------------ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCC
Confidence            99999998653            344444  234556789999999998877654 456888999999988876543322


Q ss_pred             CceEEEEeeCCCEEEEecCCeEEEEecC
Q psy1242         496 SPESVVMSREGVIVVNYERGHIAAFTMN  523 (540)
Q Consensus       496 ~v~~l~fspdg~~l~s~~dg~I~lw~~~  523 (540)
                      .+..|++.++|.++++..+++|++|...
T Consensus       245 ~p~~vav~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         245 QCFDVALMDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             CEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             CEeEEEEeCCCcEEEEeCCCeEEEEEee
Confidence            5789999999998887778899999754

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.39  E-value=2.2e-05  Score=74.30  Aligned_cols=121  Identities=15%  Similarity=0.159  Sum_probs=90.2

Q ss_pred             cceEEEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEe--ccCCCCEEEEEEcCCCCEEEEEeCC
Q psy1242         395 GVVTCLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATL--TGHEQPVTSVAISAELGLVVSGSQL  472 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~~spdg~~lasgs~D  472 (540)
                      .....+++.+    +|..+++....+.+.+++.+            ++.+..+  ..+......+++.+++.++++....
T Consensus       114 ~~p~~~avd~----~G~i~v~~~~~~~~~~~~~~------------g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         114 QHPRGVTVDN----KGRIIVVECKVMRVIIFDQN------------GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             SCEEEEEECT----TSCEEEEETTTTEEEEECTT------------SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             cccceecccc----CCcEEEEeeccceeeEeccC------------CceeecccccccccccceeeeccceeEEeeeccc
Confidence            3456677777    77777766666667666643            2344443  3456678889999999998888888


Q ss_pred             CcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEeee
Q psy1242         473 GPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       473 g~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~~  531 (540)
                      +.|.+++.+|+.+.++........+..|++.++|+++++-  .++.|.+|+.+|+.+.++.
T Consensus       178 ~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~  238 (279)
T d1q7fa_         178 HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE  238 (279)
T ss_dssp             TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred             cceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEe
Confidence            9999999999999888543322257899999999988773  3457999999999988764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.37  E-value=1.1e-05  Score=79.71  Aligned_cols=171  Identities=9%  Similarity=0.053  Sum_probs=104.5

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEE-e
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASG-S  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sg-s  417 (540)
                      ..+++++|||++++++......|.+|+......+.....         .. ..........++|+|    +++++... .
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~---------~~-~~~~g~gPr~i~f~p----dg~~~yv~~e  212 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---------VD-APDPGDHPRWVAMHP----TGNYLYALME  212 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---------EE-CSSTTCCEEEEEECT----TSSEEEEEET
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc---------ee-ecCCCCceEEEEECC----CCceEEEecc
Confidence            568899999999888777778899987654322211100         00 022345688999999    89887554 4


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEe--------------ccCCCCEEEEEEcCCCCEEEEEeC-CC-----cEEE
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATL--------------TGHEQPVTSVAISAELGLVVSGSQ-LG-----PVLV  477 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l--------------~~h~~~V~~v~~spdg~~lasgs~-Dg-----~v~i  477 (540)
                      .+++|.+|+++.......      .....+              ..+......+.++|+|++|+++.+ +.     .|..
T Consensus       213 ~~~~V~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~  286 (365)
T d1jofa_         213 AGNRICEYVIDPATHMPV------YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG  286 (365)
T ss_dssp             TTTEEEEEEECTTTCCEE------EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred             CCCEEEEEEecCCCceEE------EEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEE
Confidence            689999999876432110      000111              122334567899999998877643 22     2444


Q ss_pred             Ee--CCCcEEEEe---cCCCCCCCceEEEEee-CCCEEEEe--cCCeEEEEecCCcEEEe
Q psy1242         478 HT--TFGDLLRSL---DPPSGFASPESVVMSR-EGVIVVNY--ERGHIAAFTMNGNRLRH  529 (540)
Q Consensus       478 w~--~~g~~~~~l---~~~~~~~~v~~l~fsp-dg~~l~s~--~dg~I~lw~~~g~~l~~  529 (540)
                      +.  ..+...+..   ........+.+++++| +|++|+++  .++.|.+|+++++.+..
T Consensus       287 ~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~  346 (365)
T d1jofa_         287 FKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHR  346 (365)
T ss_dssp             EEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEE
T ss_pred             EEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcE
Confidence            42  344432211   1111111467899998 89988774  46899999988665443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=3.8e-05  Score=71.26  Aligned_cols=161  Identities=11%  Similarity=0.004  Sum_probs=96.0

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeE-EEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE-EEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARI-VQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF-IASG  416 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~-~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~-l~sg  416 (540)
                      ..+..|+|+|+.++.....++...++....... ....               ...........+++    ++.. +++.
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~----~~~~~~~~~  145 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV---------------TDGRSNNTEPTWFP----DSQNLAFTS  145 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC---------------CCCSSCEEEEEECT----TSSEEEEEE
T ss_pred             cccceecCCCCeeeEeeecCCccceeecccccccceee---------------eecccccccccccc----ccccceecc
Confidence            456778999998665555454444433322211 1111               23334445556666    5544 4555


Q ss_pred             eCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC-cEEEE--eCCCcEEEEecCCCC
Q psy1242         417 SADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG-PVLVH--TTFGDLLRSLDPPSG  493 (540)
Q Consensus       417 s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg-~v~iw--~~~g~~~~~l~~~~~  493 (540)
                      ..++...+|......          .....+..+........|+|+++.++..+.++ ...+|  +..+.....+.. ..
T Consensus       146 ~~~g~~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~  214 (269)
T d2hqsa1         146 DQAGRPQVYKVNING----------GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-TF  214 (269)
T ss_dssp             CTTSSCEEEEEETTS----------SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-SS
T ss_pred             cccCCceEeeeeccc----------ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeec-Cc
Confidence            566766666554322          22344455666777889999999887766544 44554  444444444433 33


Q ss_pred             CCCceEEEEeeCCCEEEEec----CCeEEEEecCCcEEEeee
Q psy1242         494 FASPESVVMSREGVIVVNYE----RGHIAAFTMNGNRLRHES  531 (540)
Q Consensus       494 ~~~v~~l~fspdg~~l~s~~----dg~I~lw~~~g~~l~~~~  531 (540)
                        ......|||||+.|+..+    ...|++++++|.....+.
T Consensus       215 --~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt  254 (269)
T d2hqsa1         215 --LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  254 (269)
T ss_dssp             --SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             --cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEe
Confidence              457889999999987632    356899999988776664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=0.00011  Score=68.44  Aligned_cols=152  Identities=8%  Similarity=0.048  Sum_probs=101.3

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++.++|+ ++++...++.+..++..........               ........++++++    +|+.+++...
T Consensus       100 p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~~p~~i~~~~----~g~~~v~~~~  159 (260)
T d1rwia_         100 PEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLP---------------FTGLNDPDGVAVDN----SGNVYVTDTD  159 (260)
T ss_dssp             EEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECC---------------CCSCCSCCEEEECT----TCCEEEEEGG
T ss_pred             cccccccccce-eEeeccccccccccccccceeeeee---------------ecccCCcceeeecC----CCCEeeeccc
Confidence            56788889988 5666666666777766543322111               12234567899999    8888888888


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v  497 (540)
                      ++.|..++.+...            ...+ ...-.....|++.++|.++++....+.|..++..+.....+.... ...+
T Consensus       160 ~~~i~~~d~~~~~------------~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~-~~~P  226 (260)
T d1rwia_         160 NNRVVKLEAESNN------------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-LNTP  226 (260)
T ss_dssp             GTEEEEECTTTCC------------EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS-CCCE
T ss_pred             cccccccccccce------------eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC-CCCe
Confidence            8889999866421            1222 234456788999999999888888888877766555444443222 1257


Q ss_pred             eEEEEeeCCCEEEE-ecCCeEEEEecC
Q psy1242         498 ESVVMSREGVIVVN-YERGHIAAFTMN  523 (540)
Q Consensus       498 ~~l~fspdg~~l~s-~~dg~I~lw~~~  523 (540)
                      ..|+++++|.+.++ ..+++|..++..
T Consensus       227 ~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         227 LAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            89999999987776 445777766644

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.21  E-value=2.5e-06  Score=87.05  Aligned_cols=113  Identities=10%  Similarity=0.035  Sum_probs=85.8

Q ss_pred             EEEeccCccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-------
Q psy1242         399 CLSRSECNITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-------  471 (540)
Q Consensus       399 ~l~~sp~~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-------  471 (540)
                      .+.|.+    +++++..  .|+.+.+||..++....+-      .-..+..|...|.++.|||||+.|+.++.       
T Consensus        21 ~~~W~~----d~~~~~~--~~~~~~~~~~~t~~~~~~~------~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~   88 (470)
T d2bgra1          21 SLRWIS----DHEYLYK--QENNILVFNAEYGNSSVFL------ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH   88 (470)
T ss_dssp             CCEECS----SSEEEEE--SSSCEEEEETTTCCEEEEE------CTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred             CCEeCC----CCEEEEE--cCCcEEEEECCCCCEEEEE------chhhhhhccCccceeEECCCCCEEEEEECCcceeee
Confidence            467888    8887764  5789999998874321100      00133456678999999999999998753       


Q ss_pred             --CCcEEEEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecCCeEEEEecCCc
Q psy1242         472 --LGPVLVHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYERGHIAAFTMNGN  525 (540)
Q Consensus       472 --Dg~v~iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~dg~I~lw~~~g~  525 (540)
                        ++.+.+|+..+..+..+..+..  .+..+.|||||+.||...++.+.+|+..+.
T Consensus        89 s~~~~~~l~d~~~~~~~~l~~~~~--~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g  142 (470)
T d2bgra1          89 SYTASYDIYDLNKRQLITEERIPN--NTQWVTWSPVGHKLAYVWNNDIYVKIEPNL  142 (470)
T ss_dssp             CEEEEEEEEETTTTEECCSSCCCT--TEEEEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred             ccCceEEEEECCCCcccccccCCc--cccccccccCcceeeEeecccceEEECCCC
Confidence              4667888886666777777776  679999999999999988999999998844

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=7.5e-06  Score=80.48  Aligned_cols=117  Identities=10%  Similarity=-0.091  Sum_probs=81.3

Q ss_pred             ecCCCEE--EEEEecCCc--EEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe---
Q psy1242         345 TVDSRFL--LACGFWDNS--FRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS---  417 (540)
Q Consensus       345 spdg~~l--lasgs~Dgs--v~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs---  417 (540)
                      .++++..  .+.++.+++  +.++|..+++.+..+               .++...  .++|+|    ||+.|+..+   
T Consensus        28 ~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~---------------~~~~~~--~~a~sp----Dg~~i~~~~~~~   86 (368)
T d1mdah_          28 GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHS---------------LGAFLS--LAVAGH----SGSDFALASTSF   86 (368)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE---------------EECTTC--EEEECT----TSSCEEEEEEEE
T ss_pred             CCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEE---------------eCCCCC--cceECC----CCCEEEEEcccC
Confidence            5666643  333445555  566699999988887               455443  588999    999888754   


Q ss_pred             -------CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCC-------CEEEEEEcCCCCEEEEEe-CCCcEEEEeC-C
Q psy1242         418 -------ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQ-------PVTSVAISAELGLVVSGS-QLGPVLVHTT-F  481 (540)
Q Consensus       418 -------~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~-------~V~~v~~spdg~~lasgs-~Dg~v~iw~~-~  481 (540)
                             .|++|++||..+           ++++..+..+..       ....++|+|||++++.+. .++.+.+|+. +
T Consensus        87 ~~~~~g~~d~~v~v~D~~t-----------~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~  155 (368)
T d1mdah_          87 ARSAKGKRTDYVEVFDPVT-----------FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG  155 (368)
T ss_dssp             TTTTSSSEEEEEEEECTTT-----------CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred             ccccccccCCeEEEEECCC-----------CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                   478899999876           344444433221       223589999999888776 5789998865 8


Q ss_pred             CcEEEEecCCCC
Q psy1242         482 GDLLRSLDPPSG  493 (540)
Q Consensus       482 g~~~~~l~~~~~  493 (540)
                      ++.+..+..+..
T Consensus       156 ~~~~~~~~~~~~  167 (368)
T d1mdah_         156 ASDDQLTKSASC  167 (368)
T ss_dssp             TEEEEEEECSSC
T ss_pred             CcEeEEeeccCc
Confidence            888888876554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.08  E-value=0.00055  Score=65.74  Aligned_cols=226  Identities=12%  Similarity=0.022  Sum_probs=126.8

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCC-ccccccCC---C----
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAP-VPKRHLGD---N----  330 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~-~~~~~~~~---~----  330 (540)
                      .+..++.+.++....+.|..|++.+........-   .....+.+.+.+||.+.++....... .....+..   .    
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~---~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~  122 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  122 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC---CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee
Confidence            4445555566666778899999876542221110   01122346788898877654211111 00001100   0    


Q ss_pred             cC-cceeeEEEEEEEecCCCEEEEEEecC------CcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEec
Q psy1242         331 FS-QKLRVRHNCFVTTVDSRFLLACGFWD------NSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRS  403 (540)
Q Consensus       331 ~~-~~~~v~~~~~~~spdg~~llasgs~D------gsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~s  403 (540)
                      .. .........+++.++|+ +.++....      +.+..++.+ ++.+..+               ...-...+.|+|+
T Consensus       123 ~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~---------------~~~~~~pnGia~s  185 (319)
T d2dg1a1         123 IEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI---------------IQNISVANGIALS  185 (319)
T ss_dssp             ECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTT-SCCEEEE---------------EEEESSEEEEEEC
T ss_pred             ccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecc-cceeEEE---------------eeccceeeeeeec
Confidence            00 01122356778899998 45553221      224444443 3333333               2233456789999


Q ss_pred             cCccCCCcEE-EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q psy1242         404 ECNITADCFI-ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFG  482 (540)
Q Consensus       404 p~~~~dg~~l-~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g  482 (540)
                      |    +++.| ++-+..+.|..++++........   .................+++.++|.+.++....+.|.+++.+|
T Consensus       186 ~----dg~~lyvad~~~~~I~~~d~~~~g~~~~~---~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         186 T----DEKVLWVTETTANRLHRIALEDDGVTIQP---FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             T----TSSEEEEEEGGGTEEEEEEECTTSSSEEE---EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             c----ccceEEEecccCCceEEEEEcCCCceecc---ccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            9    88765 55567889999987642110000   0000111111222356899999999999888999999999999


Q ss_pred             cEEEEecCCCC----CCCceEEEEeeCCCEEEE
Q psy1242         483 DLLRSLDPPSG----FASPESVVMSREGVIVVN  511 (540)
Q Consensus       483 ~~~~~l~~~~~----~~~v~~l~fspdg~~l~s  511 (540)
                      +.+..+..+..    ...+.+++|.+++..++.
T Consensus       259 ~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~  291 (319)
T d2dg1a1         259 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  291 (319)
T ss_dssp             CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEE
Confidence            99998876532    224679999988776554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.02  E-value=0.00027  Score=67.27  Aligned_cols=228  Identities=10%  Similarity=0.015  Sum_probs=130.8

Q ss_pred             eecCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCCcC------
Q psy1242         259 TLHMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDNFS------  332 (540)
Q Consensus       259 ~~~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~~~------  332 (540)
                      .+.+++.++++...+++|..|++.+.... ....    ......+.+++|+.+.+++...............-.      
T Consensus        34 Av~pdG~l~vt~~~~~~I~~i~p~g~~~~-~~~~----~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~  108 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEVGEIVSITPDGNQQI-HATV----EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT  108 (302)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCCEEE-EEEC----SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             EECCCCCEEEEeCCCCEEEEEeCCCCEEE-EEcC----CCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccc
Confidence            45556667889888999999998753221 1111    122335778999988776543333211111100000      


Q ss_pred             cceeeEEEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         333 QKLRVRHNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       333 ~~~~v~~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      .........+++.++|+ ++++.+.++.+..++...+..............     ...........++++.     +..
T Consensus       109 ~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ngi~~~~-----~~l  177 (302)
T d2p4oa1         109 LPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS-----NSESVFPAANGLKRFG-----NFL  177 (302)
T ss_dssp             CTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCS-----STTCCSCSEEEEEEET-----TEE
T ss_pred             cCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCcccee-----eccCcccccccccccC-----Cce
Confidence            00011256677889997 577777888888888887654333211000000     0011122345666653     445


Q ss_pred             EEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCC
Q psy1242         413 IASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPS  492 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~  492 (540)
                      +++.+..+.|..++.......        .....+. .......+++.++|.++++...++.|..++.+|+.........
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~  248 (302)
T d2p4oa1         178 YVSNTEKMLLLRIPVDSTDKP--------GEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQ  248 (302)
T ss_dssp             EEEETTTTEEEEEEBCTTSCB--------CCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGG
T ss_pred             eeecCCCCeEEeccccccccc--------ccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCC
Confidence            666677888888876542210        1111221 2233557999999998888888999988888887655544332


Q ss_pred             CCCCceEEEE---eeCCCEEEE
Q psy1242         493 GFASPESVVM---SREGVIVVN  511 (540)
Q Consensus       493 ~~~~v~~l~f---spdg~~l~s  511 (540)
                      ....+++++|   ++|++.|+.
T Consensus       249 ~~~~pt~vafg~~~~D~~~Lyv  270 (302)
T d2p4oa1         249 GVIGSTAVAFGQTEGDCTAIYV  270 (302)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEE
T ss_pred             CCCCceEEEEcCCCCCCCEEEE
Confidence            2225789999   678887754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.99  E-value=0.00025  Score=67.54  Aligned_cols=162  Identities=10%  Similarity=0.054  Sum_probs=100.6

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...++++|||+ |+++...+++|..++.. ++.. .+               ......+.++++++    +|++++++..
T Consensus        30 ~e~iAv~pdG~-l~vt~~~~~~I~~i~p~-g~~~-~~---------------~~~~~~~~gla~~~----dG~l~v~~~~   87 (302)
T d2p4oa1          30 LENLASAPDGT-IFVTNHEVGEIVSITPD-GNQQ-IH---------------ATVEGKVSGLAFTS----NGDLVATGWN   87 (302)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEECTT-CCEE-EE---------------EECSSEEEEEEECT----TSCEEEEEEC
T ss_pred             cCCEEECCCCC-EEEEeCCCCEEEEEeCC-CCEE-EE---------------EcCCCCcceEEEcC----CCCeEEEecC
Confidence            34578899999 68888889999888865 4432 33               34567899999999    9999999888


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-Cc--------------
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTF-GD--------------  483 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~-g~--------------  483 (540)
                      ++.+.+|+........       ..+.. .........+++.++++++++.+.++.+..++.. +.              
T Consensus        88 ~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  159 (302)
T d2p4oa1          88 ADSIPVVSLVKSDGTV-------ETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN  159 (302)
T ss_dssp             TTSCEEEEEECTTSCE-------EEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             CceEEEEEecccccce-------eeccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceee
Confidence            8888888865432110       11111 1233456677777777766665555444332211 10              


Q ss_pred             --------------------------EEEEecCCC-C----------CCCceEEEEeeCCCEEEE-ecCCeEEEEecCCc
Q psy1242         484 --------------------------LLRSLDPPS-G----------FASPESVVMSREGVIVVN-YERGHIAAFTMNGN  525 (540)
Q Consensus       484 --------------------------~~~~l~~~~-~----------~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~  525 (540)
                                                .+..+.... .          ...+..+++.++|.+.++ ..+++|..++++|+
T Consensus       160 ~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         160 SESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             TTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             ccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence                                      011110000 0          013457899999987666 45788999999887


Q ss_pred             EEEee
Q psy1242         526 RLRHE  530 (540)
Q Consensus       526 ~l~~~  530 (540)
                      .....
T Consensus       240 ~~~~~  244 (302)
T d2p4oa1         240 TTIIA  244 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=6.7e-05  Score=70.04  Aligned_cols=156  Identities=10%  Similarity=0.068  Sum_probs=102.5

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD  419 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D  419 (540)
                      ..++++++|+ ++++....+.+++++..++..+...                .......+|++.+    +|+++++-...
T Consensus        60 ~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~~~----------------~~~~~p~~iavd~----~g~i~v~d~~~  118 (260)
T d1rwia_          60 QGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPF----------------DGLNYPEGLAVDT----QGAVYVADRGN  118 (260)
T ss_dssp             CCEEECTTCC-EEEEETTTEEEEECTTCSCCEECCC----------------CSCCSEEEEEECT----TCCEEEEEGGG
T ss_pred             eEEEEcCCCC-EEEeeeeeceeeeeeeccceeeeee----------------eeeeecccccccc----cceeEeecccc
Confidence            3456789998 5677766666666655444433222                2235678999999    88888776666


Q ss_pred             CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCCCCCCCceE
Q psy1242         420 CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPPSGFASPES  499 (540)
Q Consensus       420 gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~~~~~~v~~  499 (540)
                      ..+..++......          ..... .-.....++++++++.++++...++.|..++.++.....+..... ..+..
T Consensus       119 ~~~~~~~~~~~~~----------~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~-~~p~g  186 (260)
T d1rwia_         119 NRVVKLAAGSKTQ----------TVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI-TAPWG  186 (260)
T ss_dssp             TEEEEECTTCSSC----------EECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC-CSEEE
T ss_pred             cccccccccccee----------eeeee-cccCCcceeeecCCCCEeeeccccccccccccccceeeeeecccc-CCCcc
Confidence            6777776543211          11111 112345689999999988888888888888777666555543222 15789


Q ss_pred             EEEeeCCCEEEEe-cCCeEEEEecCCcEEE
Q psy1242         500 VVMSREGVIVVNY-ERGHIAAFTMNGNRLR  528 (540)
Q Consensus       500 l~fspdg~~l~s~-~dg~I~lw~~~g~~l~  528 (540)
                      |++.++|.+.++. ..+.|..++.++....
T Consensus       187 i~~d~~g~l~vsd~~~~~i~~~~~~~~~~~  216 (260)
T d1rwia_         187 IAVDEAGTVYVTEHNTNQVVKLLAGSTTST  216 (260)
T ss_dssp             EEECTTCCEEEEETTTTEEEEECTTCSCCE
T ss_pred             ceeeeeeeeeeeecCCCEEEEEeCCCCeEE
Confidence            9999999988774 4678888888765433

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=0.00044  Score=63.72  Aligned_cols=132  Identities=13%  Similarity=-0.030  Sum_probs=84.7

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEE--EEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRV--FSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~i--wd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      ....++++++.++++...++...|  .+...+.... +               ..+........|+|    +++.++..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~---------------~~~~~~~~~~~~sp----dg~~~~~~~  189 (269)
T d2hqsa1         130 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I---------------TWEGSQNQDADVSS----DGKFMVMVS  189 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C---------------CCSSSEEEEEEECT----TSSEEEEEE
T ss_pred             cccccccccccceecccccCCceEeeeeccccccee-e---------------eccccccccccccc----ccceeEEEe
Confidence            344567888876666666665444  4555443322 2               34556677889999    898887765


Q ss_pred             C-CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCcEEEEecCCCC
Q psy1242         418 A-DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLG---PVLVHTTFGDLLRSLDPPSG  493 (540)
Q Consensus       418 ~-DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg---~v~iw~~~g~~~~~l~~~~~  493 (540)
                      . .+...+|......          .. ..+..+........|||||+.|+..+..+   .+.+++.+|.....+....+
T Consensus       190 ~~~~~~~i~~~~~~~----------~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g  258 (269)
T d2hqsa1         190 SNGGQQHIAKQDLAT----------GG-VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG  258 (269)
T ss_dssp             ECSSCEEEEEEETTT----------CC-EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSS
T ss_pred             ecCCceeeeEeeccc----------cc-ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCC
Confidence            4 5566666654422          12 23334555667889999999887655433   45667778877777776655


Q ss_pred             CCCceEEEEee
Q psy1242         494 FASPESVVMSR  504 (540)
Q Consensus       494 ~~~v~~l~fsp  504 (540)
                        .+...+|||
T Consensus       259 --~~~~p~WSP  267 (269)
T d2hqsa1         259 --QVKFPAWSP  267 (269)
T ss_dssp             --EEEEEEECC
T ss_pred             --cEEeEEeCC
Confidence              567788987

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.88  E-value=7.2e-05  Score=75.23  Aligned_cols=148  Identities=9%  Similarity=-0.036  Sum_probs=98.0

Q ss_pred             CCCEEEEEEecCCcEEEEEccCCeEEEEEeccc-ce--eee------------eeEEEeeccCcceEEEEeccCccCCCc
Q psy1242         347 DSRFLLACGFWDNSFRVFSTDNARIVQIIFGHY-GV--VTS------------RIVQIIFGHYGVVTCLSRSECNITADC  411 (540)
Q Consensus       347 dg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~-~~--v~~------------~~~~~l~~h~~~Vt~l~~sp~~~~dg~  411 (540)
                      |..+.+++|+.+|.|++|++.+++.+..+..-+ +.  ..+            .....-..|....++...+|    ||+
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp----DGr   84 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY----DGK   84 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE----EEE
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC----CCC
Confidence            445678999999999999999999998873211 00  000            00111123555667777789    999


Q ss_pred             EEEEE-eCCCcEEEEEcCCCcccccCCCCCCcceEEec-cCCCCEEEEEEcCCCC--EEEEEeCCCc-------------
Q psy1242         412 FIASG-SADCTVLLWHWNARTQSIVGETDTPTPRATLT-GHEQPVTSVAISAELG--LVVSGSQLGP-------------  474 (540)
Q Consensus       412 ~l~sg-s~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~~spdg~--~lasgs~Dg~-------------  474 (540)
                      +|+.. ..+.+|.++|+++.           ++...+. .+.....+++|+|+|+  +++..+.+..             
T Consensus        85 ~lfV~d~~~~rVavIDl~t~-----------k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~  153 (441)
T d1qnia2          85 YLFINDKANTRVARIRLDIM-----------KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN  153 (441)
T ss_dssp             EEEEEETTTTEEEEEETTTT-----------EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred             EEEEEcCCCCEEEEEECCCC-----------cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccc
Confidence            98555 57889999998873           3444443 4567899999999998  5555554332             


Q ss_pred             ----EEEE-eCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEe
Q psy1242         475 ----VLVH-TTFGDLLRSLDPPSGFASPESVVMSREGVIVVNY  512 (540)
Q Consensus       475 ----v~iw-~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~  512 (540)
                          +... ..+.+....+....   .+..++|+|+|++++++
T Consensus       154 ~~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt  193 (441)
T d1qnia2         154 SYTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATST  193 (441)
T ss_dssp             EEEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEE
T ss_pred             ccceEEeecCccceeeEEEecCC---CccceEECCCCCEEEEE
Confidence                1122 33566666665443   36789999999988874

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.65  E-value=0.0097  Score=55.93  Aligned_cols=148  Identities=11%  Similarity=0.032  Sum_probs=99.1

Q ss_pred             eEEEEEEEecCCCEEEEEEec----CCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         337 VRHNCFVTTVDSRFLLACGFW----DNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       337 v~~~~~~~spdg~~llasgs~----Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ...+.+.+.|+|+.. ++...    .+.-.+|.+..++.....                .....-+.++|++    +++.
T Consensus       103 ~~~nd~~vd~~G~iw-~~~~~~~~~~~~g~l~~~~~g~~~~~~----------------~~~~~~Ng~~~s~----d~~~  161 (295)
T d2ghsa1         103 NRSNDGRMHPSGALW-IGTMGRKAETGAGSIYHVAKGKVTKLF----------------ADISIPNSICFSP----DGTT  161 (295)
T ss_dssp             EEEEEEEECTTSCEE-EEEEETTCCTTCEEEEEEETTEEEEEE----------------EEESSEEEEEECT----TSCE
T ss_pred             ccceeeEECCCCCEE-EEeccccccccceeEeeecCCcEEEEe----------------eccCCcceeeecC----CCce
Confidence            346778889999953 43322    234566766666654443                2233567899999    7775


Q ss_pred             E-EEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCcEEEEecCC
Q psy1242         413 I-ASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTTFGDLLRSLDPP  491 (540)
Q Consensus       413 l-~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~~g~~~~~l~~~  491 (540)
                      + ++.+..+.|..++++.......++   ......+.+-......+++..+|.+.++.-..+.|..++.+|+.+..+..+
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~~---~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP  238 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTGK---AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP  238 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSC---CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred             EEEeecccceeeEeeecccccccccc---eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCC
Confidence            5 556678888888876432211110   111223344455678899999999888777788898899999999999887


Q ss_pred             CCCCCceEEEEe-eCCCEEE
Q psy1242         492 SGFASPESVVMS-REGVIVV  510 (540)
Q Consensus       492 ~~~~~v~~l~fs-pdg~~l~  510 (540)
                      ..  .+++++|- ++.+.|.
T Consensus       239 ~~--~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         239 GK--QTTCPAFIGPDASRLL  256 (295)
T ss_dssp             CS--BEEEEEEESTTSCEEE
T ss_pred             CC--ceEEEEEeCCCCCEEE
Confidence            66  67999996 6766554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.62  E-value=0.0014  Score=62.83  Aligned_cols=152  Identities=6%  Similarity=0.053  Sum_probs=96.3

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCC-
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSAD-  419 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~D-  419 (540)
                      .++|.++|+ |+++....+.|..|+.++++....+               .........+++++    +|+++++...+ 
T Consensus        44 G~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~---------------~~~~~~p~gla~~~----dG~l~va~~~~~  103 (319)
T d2dg1a1          44 GLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPF---------------VSHKANPAAIKIHK----DGRLFVCYLGDF  103 (319)
T ss_dssp             EEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEE---------------ECSSSSEEEEEECT----TSCEEEEECTTS
T ss_pred             eCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEE---------------eCCCCCeeEEEECC----CCCEEEEecCCC
Confidence            567789998 6778778899999998876655544               34456678999999    99888776433 


Q ss_pred             -CcEEEEEcCCCcccccCCCCCCcceEEecc--CCCCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCcEEEEecC
Q psy1242         420 -CTVLLWHWNARTQSIVGETDTPTPRATLTG--HEQPVTSVAISAELGLVVSGSQL------GPVLVHTTFGDLLRSLDP  490 (540)
Q Consensus       420 -gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~~spdg~~lasgs~D------g~v~iw~~~g~~~~~l~~  490 (540)
                       ....++.+....         .........  -......+++.++|++.++....      +.+...+.+++.+..+..
T Consensus       104 ~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~  174 (319)
T d2dg1a1         104 KSTGGIFAATENG---------DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ  174 (319)
T ss_dssp             SSCCEEEEECTTS---------CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred             ccceeEEEEcCCC---------ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee
Confidence             334444443321         111111211  12357789999999977765332      223334555654444332


Q ss_pred             CCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecC
Q psy1242         491 PSGFASPESVVMSREGVIVVNY--ERGHIAAFTMN  523 (540)
Q Consensus       491 ~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~  523 (540)
                      .-.  .++.++|+|+++.|..+  ..++|..|+++
T Consensus       175 ~~~--~pnGia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         175 NIS--VANGIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             EES--SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccc--eeeeeeeccccceEEEecccCCceEEEEEc
Confidence            222  46789999999876654  46889999875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.61  E-value=0.0018  Score=59.43  Aligned_cols=53  Identities=11%  Similarity=0.019  Sum_probs=39.9

Q ss_pred             EEecC--CCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe
Q psy1242         343 VTTVD--SRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS  417 (540)
Q Consensus       343 ~~spd--g~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs  417 (540)
                      .++||  |++++.+.  ++.|.+.|+.+++.. .+               ..+.+.+...+|||    ||++|+-.+
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~-~L---------------t~~~~~~~~p~~SP----DG~~iaf~~   59 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTR-KI---------------VSNLGVINNARFFP----DGRKIAIRV   59 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEE-EE---------------ECSSSEEEEEEECT----TSSEEEEEE
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEE-EE---------------ecCCCcccCEEECC----CCCEEEEEE
Confidence            35788  99865554  567888899987765 44               45677888999999    999988653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.57  E-value=0.0036  Score=59.67  Aligned_cols=118  Identities=11%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             cceEEEEeccCccCCCc-----EEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEE
Q psy1242         395 GVVTCLSRSECNITADC-----FIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVS  468 (540)
Q Consensus       395 ~~Vt~l~~sp~~~~dg~-----~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~las  468 (540)
                      ..-+.++|+|    ++.     +.++-+..+.|..+++.... ...    ..+....+.+ +......+++.++|.+.++
T Consensus       172 ~~pNGi~~~~----d~d~~~~~lyv~d~~~~~i~~~d~~~~g-~~~----~~~~~~~~~~~~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         172 QFPNGIAVRH----MNDGRPYQLIVAETPTKKLWSYDIKGPA-KIE----NKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             SSEEEEEEEE----CTTSCEEEEEEEETTTTEEEEEEEEETT-EEE----EEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             ceeeeeEECC----CCCcceeEEEEEeecccceEEeeccCcc-ccc----eeeEEEEccccccccceeeEEecCCcEEEE
Confidence            3457899998    653     44555678888888865321 100    0011122222 2234568999999999888


Q ss_pred             EeCCCcEEEEeCC-CcEEEEecCCCCCCCceEEEEeeCCCEEE-E-ecCCeEEEEecC
Q psy1242         469 GSQLGPVLVHTTF-GDLLRSLDPPSGFASPESVVMSREGVIVV-N-YERGHIAAFTMN  523 (540)
Q Consensus       469 gs~Dg~v~iw~~~-g~~~~~l~~~~~~~~v~~l~fspdg~~l~-s-~~dg~I~lw~~~  523 (540)
                      ....+.|.+++.+ ++.+..+..+..  .+.+++|.|+++.|. + +..|+|..++..
T Consensus       243 ~~~~g~I~~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EcCCCEEEEEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8888999998864 555666666554  578999999997544 3 456888888765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.33  E-value=0.015  Score=54.60  Aligned_cols=170  Identities=10%  Similarity=0.009  Sum_probs=104.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ..++++.++|.. +++ +. ..+.++|..+++.........           ......++.+.+.|    +|++.++...
T Consensus        61 ~~~i~~~~dg~l-~va-~~-~gl~~~d~~tg~~~~l~~~~~-----------~~~~~~~nd~~vd~----~G~iw~~~~~  122 (295)
T d2ghsa1          61 GSALAKISDSKQ-LIA-SD-DGLFLRDTATGVLTLHAELES-----------DLPGNRSNDGRMHP----SGALWIGTMG  122 (295)
T ss_dssp             EEEEEEEETTEE-EEE-ET-TEEEEEETTTCCEEEEECSST-----------TCTTEEEEEEEECT----TSCEEEEEEE
T ss_pred             cEEEEEecCCCE-EEE-Ee-CccEEeecccceeeEEeeeec-----------CCCcccceeeEECC----CCCEEEEecc
Confidence            456777889874 444 33 458899999887643331000           01123578888999    8887665432


Q ss_pred             ----CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCC-------CcE--
Q psy1242         419 ----DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLV-VSGSQLGPVLVHTTF-------GDL--  484 (540)
Q Consensus       419 ----DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~l-asgs~Dg~v~iw~~~-------g~~--  484 (540)
                          .+.-.+|.+..           ++..... ..-..-..++|+++++.+ ++-+..+.|..++.+       ++.  
T Consensus       123 ~~~~~~~g~l~~~~~-----------g~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~  190 (295)
T d2ghsa1         123 RKAETGAGSIYHVAK-----------GKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV  190 (295)
T ss_dssp             TTCCTTCEEEEEEET-----------TEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE
T ss_pred             ccccccceeEeeecC-----------CcEEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEE
Confidence                22345555443           1222222 223346789999999855 455566777665321       111  


Q ss_pred             EEEecCCCCCCCceEEEEeeCCCEEEE-ecCCeEEEEecCCcEEEeeecC-CcceecC
Q psy1242         485 LRSLDPPSGFASPESVVMSREGVIVVN-YERGHIAAFTMNGNRLRHESHN-DNLQKTA  540 (540)
Q Consensus       485 ~~~l~~~~~~~~v~~l~fspdg~~l~s-~~dg~I~lw~~~g~~l~~~~~~-~~V~~va  540 (540)
                      ...+....+  .+..+++..+|.+.++ ...+.|..|+++|+++..+... ..++++|
T Consensus       191 ~~~~~~~~g--~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~  246 (295)
T d2ghsa1         191 FIDSTGIKG--GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPA  246 (295)
T ss_dssp             EEECTTSSS--EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEE
T ss_pred             EeccCcccc--cccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEE
Confidence            122223333  5788999999997766 4678999999999999988743 4566654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.04  E-value=0.0087  Score=58.09  Aligned_cols=164  Identities=11%  Similarity=0.087  Sum_probs=87.0

Q ss_pred             EEEEecCCCEEEEEEecCCcEEEEEccC-CeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE--EEEe
Q psy1242         341 CFVTTVDSRFLLACGFWDNSFRVFSTDN-ARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI--ASGS  417 (540)
Q Consensus       341 ~~~~spdg~~llasgs~Dgsv~iwd~~~-g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l--~sgs  417 (540)
                      -++++++++.|.++ . .+.+..|.+.. +.......              .........+++++    +++.+  +++.
T Consensus        44 ~la~s~d~~~ly~~-~-~~~~~~~~i~~~~~~~~~~~--------------~~~~~~p~~v~~~~----~~~~~~v~~a~  103 (365)
T d1jofa_          44 WMTFDHERKNIYGA-A-MKKWSSFAVKSPTEIVHEAS--------------HPIGGHPRANDADT----NTRAIFLLAAK  103 (365)
T ss_dssp             EEEECTTSSEEEEE-E-BTEEEEEEEEETTEEEEEEE--------------EECCSSGGGGCTTS----CCEEEEEEECS
T ss_pred             EEEEcCCCCEEEEE-e-CCcEEEEEEeCCCCeEEEee--------------ecCCCCcEEEEECC----CCCEEEEEEec
Confidence            36779999975544 3 45677776653 33322220              11122344567777    67643  3222


Q ss_pred             -CCCcEEEEEcCCCcccc--cCCCCCCc---ceEE-eccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEE--eCCCcEE--
Q psy1242         418 -ADCTVLLWHWNARTQSI--VGETDTPT---PRAT-LTGHEQPVTSVAISAELGLVVSGSQ-LGPVLVH--TTFGDLL--  485 (540)
Q Consensus       418 -~DgtV~lWd~~~~~~~~--~~~~~~~~---~~~~-l~~h~~~V~~v~~spdg~~lasgs~-Dg~v~iw--~~~g~~~--  485 (540)
                       ..++|..+.+.......  ........   +... -......+.++.|+|+|+++++++. ...|.++  +.++...  
T Consensus       104 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~  183 (365)
T d1jofa_         104 QPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV  183 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec
Confidence             23555555432211000  00000000   1111 1122335789999999998887764 3456665  3355443  


Q ss_pred             EEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242         486 RSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG  524 (540)
Q Consensus       486 ~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g  524 (540)
                      ...........+..++|+|+|+++...  .+++|.+|++++
T Consensus       184 ~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             cceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            222222111257999999999988763  368999999873

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.94  E-value=0.08  Score=49.77  Aligned_cols=114  Identities=9%  Similarity=0.103  Sum_probs=75.0

Q ss_pred             EEEEEecCCC----EEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeec-cCcceEEEEeccCccCCCcEEE
Q psy1242         340 NCFVTTVDSR----FLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFG-HYGVVTCLSRSECNITADCFIA  414 (540)
Q Consensus       340 ~~~~~spdg~----~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~-h~~~Vt~l~~sp~~~~dg~~l~  414 (540)
                      +-++|++++.    .|+++.+..+.|..+++.....+..-         +....+.+ +....-.+++.+    +|+..+
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~---------~~~~~~~~~~~~~pdGiavD~----~GnlyV  241 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK---------KVWGHIPGTHEGGADGMDFDE----DNNLLV  241 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE---------EEEEECCCCSSCEEEEEEEBT----TCCEEE
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee---------eEEEEccccccccceeeEEec----CCcEEE
Confidence            4567788764    46677777888888887643322211         00011111 223456789998    899888


Q ss_pred             EEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q psy1242         415 SGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELG-LVVSGSQLGPVLV  477 (540)
Q Consensus       415 sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~-~lasgs~Dg~v~i  477 (540)
                      +....+.|.+||.+.           ++....+.......++++|.++++ ++++.+..|.|..
T Consensus       242 a~~~~g~I~~~dp~~-----------g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDG-----------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             EEETTTEEEEECTTC-----------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEcCCCEEEEEeCCC-----------CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEE
Confidence            888889999998654           234455555567789999999997 5566777787754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00088  Score=67.95  Aligned_cols=142  Identities=7%  Similarity=-0.084  Sum_probs=87.4

Q ss_pred             EEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEe-----
Q psy1242         343 VTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGS-----  417 (540)
Q Consensus       343 ~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs-----  417 (540)
                      .|.+++.+ +. -..+|.|.+||+.+++....+..+            .-..-.+....+||    ||++++.+.     
T Consensus        23 ~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~~Sp----D~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IY-REQKGTVRLWNVETNTSTVLIEGK------------KIESLRAIRYEISP----DREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEECTT------------TTTTTTCSEEEECT----TSSEEEEEESCCCC
T ss_pred             EEeCCCcE-EE-EeCCCcEEEEECCCCCEEEEEcCc------------cccccccceeEECC----CCCeEEEEEcccce
Confidence            35677774 33 345789999999988765444111            11223567788999    999987764     


Q ss_pred             ----CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCC
Q psy1242         418 ----ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPS  492 (540)
Q Consensus       418 ----~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~  492 (540)
                          ..+...++|+.++..         +.+.........+....|||||+.||-.. ++.|.+... .+..++......
T Consensus        85 ~r~s~~~~~~i~d~~~~~~---------~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~  154 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDP---------QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGK  154 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCC---------EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCB
T ss_pred             eEeeccccEEEEEccCCce---------eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccC
Confidence                346778888876432         12222222334455678999999988776 566766543 444443333221


Q ss_pred             CCC----------------CceEEEEeeCCCEEEEe
Q psy1242         493 GFA----------------SPESVVMSREGVIVVNY  512 (540)
Q Consensus       493 ~~~----------------~v~~l~fspdg~~l~s~  512 (540)
                      ...                .-.++-|||||+.||..
T Consensus       155 ~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             cceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            100                12467899999999974

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.025  Score=56.72  Aligned_cols=110  Identities=5%  Similarity=-0.096  Sum_probs=64.1

Q ss_pred             EEEEecCCCEEEEEE--------ecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         341 CFVTTVDSRFLLACG--------FWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       341 ~~~~spdg~~llasg--------s~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ...+|||++++++..        +..+.+.++|+.++........             ......+....|||    ||+.
T Consensus        65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~-------------~~~~~~l~~~~wSP----DG~~  127 (465)
T d1xfda1          65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-------------EVSNAKLQYAGWGP----KGQQ  127 (465)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT-------------TCCSCCCSBCCBCS----STTC
T ss_pred             eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc-------------cCCccccceeeecc----CCce
Confidence            456799999865543        3346788999998775432200             12334566689999    9999


Q ss_pred             EEEEeCCCcEEEEEcCCCcccc-cCCCCCCcceEEeccCCC---------CEEEEEEcCCCCEEEEEeC
Q psy1242         413 IASGSADCTVLLWHWNARTQSI-VGETDTPTPRATLTGHEQ---------PVTSVAISAELGLVVSGSQ  471 (540)
Q Consensus       413 l~sgs~DgtV~lWd~~~~~~~~-~~~~~~~~~~~~l~~h~~---------~V~~v~~spdg~~lasgs~  471 (540)
                      ||-.. ++.+.+.+........ ...   +..-..+.|..+         .-.++.|||||+.||....
T Consensus       128 iafv~-~~nl~~~~~~~~~~~~lt~~---g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         128 LIFIF-ENNIYYCAHVGKQAIRVVST---GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             EEEEE-TTEEEEESSSSSCCEEEECC---CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             EEEEe-cceEEEEecCCCceEEEecc---cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            98876 5677777654422100 000   000001111111         1246789999999988763

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.6  Score=42.26  Aligned_cols=161  Identities=9%  Similarity=-0.055  Sum_probs=101.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEE-EEEe
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFI-ASGS  417 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l-~sgs  417 (540)
                      +..+++.+..+.++.+-..++.|+..+++.+.....+               ......+.+|++..    -+..| .+-.
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~---------------~~~~~~p~~iAvD~----~~~~lY~~d~   98 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---------------RQDLGSPEGIALDH----LGRTIFWTDS   98 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE---------------CTTCCCEEEEEEET----TTTEEEEEET
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE---------------EeccccccEEEEec----cCCeEEEecc
Confidence            4567788888877776667788888888755444333               33345688999986    44455 4555


Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-CcEEEE--eCCCcEEEEecCCCCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL-GPVLVH--TTFGDLLRSLDPPSGF  494 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-g~v~iw--~~~g~~~~~l~~~~~~  494 (540)
                      ..+.|.+.+++...           ....+.........+++.|...++.-.... +..+|+  ..+|.....+....- 
T Consensus        99 ~~~~I~~~~~dg~~-----------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~-  166 (263)
T d1npea_          99 QLDRIEVAKMDGTQ-----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL-  166 (263)
T ss_dssp             TTTEEEEEETTSCS-----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC-
T ss_pred             CCCEEEEEecCCce-----------EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecc-
Confidence            67899999887522           222233334578899999977766544322 333444  445544333332221 


Q ss_pred             CCceEEEEeeCCCEEEEe--cCCeEEEEecCCcEEEee
Q psy1242         495 ASPESVVMSREGVIVVNY--ERGHIAAFTMNGNRLRHE  530 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~l~~~  530 (540)
                      ..+.+|++.+.++.|...  ..+.|...+++|......
T Consensus       167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v  204 (263)
T d1npea_         167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV  204 (263)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEE
Confidence            156899999888776553  467899999987655443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.82  E-value=0.077  Score=47.75  Aligned_cols=95  Identities=4%  Similarity=-0.054  Sum_probs=60.7

Q ss_pred             EeccCccCC--CcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC-CC---c
Q psy1242         401 SRSECNITA--DCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ-LG---P  474 (540)
Q Consensus       401 ~~sp~~~~d--g~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~-Dg---~  474 (540)
                      ..+|    |  |+.++-.+. +.|.+.|+..+            ....|..+...+...+|||||+.||-.+. ++   .
T Consensus         5 ~~sP----di~G~~v~f~~~-~dl~~~d~~~g------------~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~   67 (281)
T d1k32a2           5 LLNP----DIHGDRIIFVCC-DDLWEHDLKSG------------STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNT   67 (281)
T ss_dssp             CEEE----EEETTEEEEEET-TEEEEEETTTC------------CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCE
T ss_pred             ccCC----CCCCCEEEEEeC-CcEEEEECCCC------------CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCc
Confidence            3567    7  888887654 45666676542            24567777788899999999998886542 22   2


Q ss_pred             --EEEEeCCCcEEEEecCCCC-----CCCceEEEEeeCCCEEEEe
Q psy1242         475 --VLVHTTFGDLLRSLDPPSG-----FASPESVVMSREGVIVVNY  512 (540)
Q Consensus       475 --v~iw~~~g~~~~~l~~~~~-----~~~v~~l~fspdg~~l~s~  512 (540)
                        |.+....+...+.+.....     .......+|+|+|+.|+..
T Consensus        68 ~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          68 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             eEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence              3333454444444533221     0134678999999998874

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.70  E-value=0.49  Score=45.90  Aligned_cols=147  Identities=10%  Similarity=0.022  Sum_probs=87.2

Q ss_pred             cCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeCCC-----
Q psy1242         346 VDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSADC-----  420 (540)
Q Consensus       346 pdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~Dg-----  420 (540)
                      +||+++++....+++|.+-|+++.++.+.++.              .....+..++..+.  ..-.+++.++.+.     
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~i--------------Pn~~~~HG~r~~~~--p~T~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI--------------PNAKGIHGLRPQKW--PRSNYVFCNGEDETPLVN  160 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC--------------SSCCSEEEEEECCS--SBCSEEEEEECSCEESSC
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEec--------------CCCCCCceeecccC--CCeEEEEccCccccccCC
Confidence            48999998888999999999999988765521              12233444444330  0345666665532     


Q ss_pred             -------------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCCCc-------------
Q psy1242         421 -------------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQLGP-------------  474 (540)
Q Consensus       421 -------------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~Dg~-------------  474 (540)
                                   .+.+.|..+..           ....+. -......++++++|+++++.|.+..             
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~-----------V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~  228 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWE-----------VAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  228 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTE-----------EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             CCccccchhhcceEEEEEecCCce-----------EEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccc
Confidence                         24556655422           111111 1123446889999999888774311             


Q ss_pred             --EEE--E---------------------e-C---CCcEEEEecCCCCCCCceEEEEeeCCCEEEEec--CCeEEEEecC
Q psy1242         475 --VLV--H---------------------T-T---FGDLLRSLDPPSGFASPESVVMSREGVIVVNYE--RGHIAAFTMN  523 (540)
Q Consensus       475 --v~i--w---------------------~-~---~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~--dg~I~lw~~~  523 (540)
                        +.+  |                     + .   ....++.+..++   .+..+.++|||++++++.  +.++.++|++
T Consensus       229 D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpK---sPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         229 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             eEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCC---CCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence              111  1                     1 1   111223333333   357899999999999864  6889999874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=1.4  Score=39.56  Aligned_cols=162  Identities=12%  Similarity=-0.011  Sum_probs=93.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      +..+++.+..+.++.+-..++.|+-.+++........           ...+......+.+|++.+.   .++...+-..
T Consensus        32 ~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~-----------~~~~~~~~~~p~glAvD~~---~~~lY~~d~~   97 (266)
T d1ijqa1          32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-----------DTVISRDIQAPDGLAVDWI---HSNIYWTDSV   97 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEC--------C-----------EEEECSSCSCCCEEEEETT---TTEEEEEETT
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce-----------EEEEeCCCCCcceEEEeec---cceEEEEecC
Confidence            3567778878776666555666766665432111000           0011233455678888762   3444455556


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCcEEEEecCCCCCCC
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQ--LGPVLVHTTFGDLLRSLDPPSGFAS  496 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~--Dg~v~iw~~~g~~~~~l~~~~~~~~  496 (540)
                      .++|.+.+++..           .....+.........+++.|...++.-...  .+.|.--..+|.....+....- ..
T Consensus        98 ~~~I~v~~~~g~-----------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~-~~  165 (266)
T d1ijqa1          98 LGTVSVADTKGV-----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI-QW  165 (266)
T ss_dssp             TTEEEEEETTSS-----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC-SC
T ss_pred             CCEEEeEecCCc-----------eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccccc-ce
Confidence            778999998752           223334445566889999986655544432  2334333556665555543221 15


Q ss_pred             ceEEEEeeCCCEEEEe--cCCeEEEEecCCcE
Q psy1242         497 PESVVMSREGVIVVNY--ERGHIAAFTMNGNR  526 (540)
Q Consensus       497 v~~l~fspdg~~l~s~--~dg~I~lw~~~g~~  526 (540)
                      +.++++.+.++.|.-.  ..+.|...+++|..
T Consensus       166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            6899999887766653  45788888888753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.51  E-value=1.6  Score=39.25  Aligned_cols=162  Identities=6%  Similarity=-0.113  Sum_probs=95.4

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA  418 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~  418 (540)
                      ...+++..-+..|..+-...+.|.+.+++.......+               .........++++|.   .|..+.+-..
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~---------------~~~l~~p~~l~vdp~---~g~ly~t~~~  142 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF---------------DTGLVNPRGIVTDPV---RGNLYWTDWN  142 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------------CSSCSSEEEEEEETT---TTEEEEEECC
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe---------------cccccCCcEEEEecc---cCcEEEeecC
Confidence            4566777667767777777889999998754432222               333466889999993   4444444333


Q ss_pred             CCcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcEEEEecCCCCCCCc
Q psy1242         419 DCTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTTFGDLLRSLDPPSGFASP  497 (540)
Q Consensus       419 DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~~g~~~~~l~~~~~~~~v  497 (540)
                      .+..+|+......         ..........-....++++.+.++.|.-+ ...+.|..-+.+|...+.+.....  .+
T Consensus       143 ~~~~~I~r~~~dG---------~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~--~P  211 (263)
T d1npea_         143 RDNPKIETSHMDG---------TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ--YP  211 (263)
T ss_dssp             SSSCEEEEEETTS---------CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC--SE
T ss_pred             CCCcEEEEecCCC---------CCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC--Cc
Confidence            3344566543211         11122223333566899999887766555 456677666677765554433222  35


Q ss_pred             eEEEEeeCCCEEEE-ecCCeEEEEecC-CcEEEee
Q psy1242         498 ESVVMSREGVIVVN-YERGHIAAFTMN-GNRLRHE  530 (540)
Q Consensus       498 ~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l~~~  530 (540)
                      .+|++. ++.+..+ ...+.|...+.. |+.+...
T Consensus       212 ~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         212 FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            678875 3443334 356888888886 6666554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.63  E-value=0.88  Score=44.13  Aligned_cols=101  Identities=6%  Similarity=0.001  Sum_probs=62.6

Q ss_pred             EEEEEecCCCEEEEEEecCC----cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         340 NCFVTTVDSRFLLACGFWDN----SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dg----sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      ..+++|||+++++.+-+.+|    .+++.|+.+|+.+...              +..  .....++|++    |++.|+-
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~--------------i~~--~~~~~~~W~~----D~~~~~Y  187 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV--------------LER--VKFSCMAWTH----DGKGMFY  187 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE--------------EEE--ECSCCEEECT----TSSEEEE
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceecccc--------------ccc--ccccceEEcC----CCCEEEE
Confidence            44567999998776755555    5999999999876432              011  1124688999    8887765


Q ss_pred             EeCC----------------CcEEEEEcCCCcccccCCCCCCcceEEeccC--CCCEEEEEEcCCCCEEEEE
Q psy1242         416 GSAD----------------CTVLLWHWNARTQSIVGETDTPTPRATLTGH--EQPVTSVAISAELGLVVSG  469 (540)
Q Consensus       416 gs~D----------------gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~~spdg~~lasg  469 (540)
                      ...|                ..|..|.+.+...         .....+...  ...+..+..+.++++++..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~---------~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS---------EDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG---------GCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             EEeccccCcccccccccCCcceEEEEECCCCcc---------ccccccccccCCceEEeeeccCCcceeeEE
Confidence            4432                2466666654321         222333333  3356778889999876543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.70  E-value=2.1  Score=40.07  Aligned_cols=98  Identities=11%  Similarity=0.060  Sum_probs=55.7

Q ss_pred             CCCcEEEEEcCCCcccccCCCCCCcceEEecc-CCCCEEEEEEcCCCCEEEEEeC---C------------CcEEEEeCC
Q psy1242         418 ADCTVLLWHWNARTQSIVGETDTPTPRATLTG-HEQPVTSVAISAELGLVVSGSQ---L------------GPVLVHTTF  481 (540)
Q Consensus       418 ~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~~spdg~~lasgs~---D------------g~v~iw~~~  481 (540)
                      ...+|.++++......       ...+.++.. .....+.|++..++.+++|-..   +            ++..++..+
T Consensus       122 ~~~~ieif~~~~~~~~-------l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKS-------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             TCCEEEEEEEETTTTE-------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CCceeEEEEEeCCCCe-------EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            4567888887643211       112233322 2245788888889988888321   1            123332222


Q ss_pred             CcEEEEecCCCCCCCceEEEEeeCCCEEEEe--cCCeEEEEecCC
Q psy1242         482 GDLLRSLDPPSGFASPESVVMSREGVIVVNY--ERGHIAAFTMNG  524 (540)
Q Consensus       482 g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~--~dg~I~lw~~~g  524 (540)
                      ++..+.+...-.  ..+.|+++||+++|+.+  ..++|+.|++++
T Consensus       195 ~~~~~~~~~~l~--~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         195 PNDVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             SSCEEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCceEEEcCCCC--ccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            222222222222  46899999999988775  468899998873

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=6.1  Score=35.04  Aligned_cols=156  Identities=12%  Similarity=0.001  Sum_probs=89.8

Q ss_pred             EEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEEEeC-
Q psy1242         340 NCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIASGSA-  418 (540)
Q Consensus       340 ~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~sgs~-  418 (540)
                      ..+++.+.+..|..+-...++|.+.+++.......+               .........++++|    ...+|.-... 
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~---------------~~~~~~P~~l~vd~----~~g~ly~~~~~  140 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF---------------RENGSKPRAIVVDP----VHGFMYWTDWG  140 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEE---------------ECTTCCEEEEEEET----TTTEEEEEECS
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEE---------------cCCCCCcceEEEEc----ccCeEEEeccC
Confidence            346677777777777777889999998855544434               44456688999998    4444444333 


Q ss_pred             -CCcEEEEEcCCCcccccCCCCCCcceEEe-ccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCcEEEE-ecCCCCC
Q psy1242         419 -DCTVLLWHWNARTQSIVGETDTPTPRATL-TGHEQPVTSVAISAELGLVVSG-SQLGPVLVHTTFGDLLRS-LDPPSGF  494 (540)
Q Consensus       419 -DgtV~lWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~~spdg~~lasg-s~Dg~v~iw~~~g~~~~~-l~~~~~~  494 (540)
                       .+.|.-.+++.            .....+ ...-....++++.+.++.|.-+ +..+.|..-+.+|.-... .......
T Consensus       141 ~~~~I~r~~~dG------------s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~  208 (266)
T d1ijqa1         141 TPAKIKKGGLNG------------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL  208 (266)
T ss_dssp             SSCEEEEEETTS------------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTT
T ss_pred             CCcceeEeccCC------------CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcc
Confidence             33454444443            222333 3334567899999887766555 455677655555543222 2222221


Q ss_pred             CCceEEEEeeCCCEEEE-ecCCeEEEEecC-CcEE
Q psy1242         495 ASPESVVMSREGVIVVN-YERGHIAAFTMN-GNRL  527 (540)
Q Consensus       495 ~~v~~l~fspdg~~l~s-~~dg~I~lw~~~-g~~l  527 (540)
                      ..+.+|++. ++.+..+ ..++.|...+.. |...
T Consensus       209 ~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         209 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             cccEEEEEE-CCEEEEEECCCCeEEEEECCCCcce
Confidence            135677776 3333333 356788777754 4433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=87.60  E-value=8.1  Score=38.50  Aligned_cols=66  Identities=17%  Similarity=0.228  Sum_probs=45.0

Q ss_pred             cCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCC-EEEE--ec---------------CCeEEEE
Q psy1242         460 SAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGV-IVVN--YE---------------RGHIAAF  520 (540)
Q Consensus       460 spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~-~l~s--~~---------------dg~I~lw  520 (540)
                      +..+.++++|+.||.++.++. +|+.+.++....+.. -.=+.+..+|+ ||+.  |.               .+.|.+|
T Consensus       485 stagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F  563 (573)
T d1kb0a2         485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV-AAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF  563 (573)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred             EEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence            336778888999999988765 999998887765421 11256677887 4443  31               2457888


Q ss_pred             ecCCcE
Q psy1242         521 TMNGNR  526 (540)
Q Consensus       521 ~~~g~~  526 (540)
                      .++|+-
T Consensus       564 ~l~g~~  569 (573)
T d1kb0a2         564 VVGGKA  569 (573)
T ss_dssp             EETCBC
T ss_pred             EeCCcC
Confidence            888763

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=87.45  E-value=6.7  Score=36.12  Aligned_cols=110  Identities=11%  Similarity=0.036  Sum_probs=66.0

Q ss_pred             CCcEEEEEeCCC-----------cEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC-CcEE
Q psy1242         409 ADCFIASGSADC-----------TVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL-GPVL  476 (540)
Q Consensus       409 dg~~l~sgs~Dg-----------tV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D-g~v~  476 (540)
                      +|+.++.|+.+.           .+.+||..+.+..        ........|.......++.+++.+++.|+.+ ..+.
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~--------~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS--------DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC--------CCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEe--------ecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            888888888531           3678998764432        1111122333334456788999999988765 4678


Q ss_pred             EEeCCCcEEEEecCCCCCCCceEEEEeeCCCEEEEecC-------CeEEEEecCCcE
Q psy1242         477 VHTTFGDLLRSLDPPSGFASPESVVMSREGVIVVNYER-------GHIAAFTMNGNR  526 (540)
Q Consensus       477 iw~~~g~~~~~l~~~~~~~~v~~l~fspdg~~l~s~~d-------g~I~lw~~~g~~  526 (540)
                      +|+.....-..+........-.+++..+||++++.|..       ..+.+||+..+.
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            88663332223322111112246777889999888531       358999987544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.96  E-value=15  Score=36.37  Aligned_cols=51  Identities=22%  Similarity=0.315  Sum_probs=36.1

Q ss_pred             cCCCCEEEEEeCCCcEEEEeC-CCcEEEEecCCCCCCCceEEEEeeCCC-EEEE
Q psy1242         460 SAELGLVVSGSQLGPVLVHTT-FGDLLRSLDPPSGFASPESVVMSREGV-IVVN  511 (540)
Q Consensus       460 spdg~~lasgs~Dg~v~iw~~-~g~~~~~l~~~~~~~~v~~l~fspdg~-~l~s  511 (540)
                      +..+.+++.|+.||.++.++. +|+.+.+++...... -.-+.+..+|+ +|+.
T Consensus       466 ~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~-~~P~ty~~dGkqyv~v  518 (560)
T d1kv9a2         466 STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIV-AAPMTFELAGRQYVAI  518 (560)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEEEEEE
T ss_pred             EECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCEEEEEE
Confidence            345678888999999998765 999998888765421 12256677886 4443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=84.26  E-value=7  Score=37.73  Aligned_cols=69  Identities=4%  Similarity=-0.099  Sum_probs=40.1

Q ss_pred             EEEEEEecCCCEEEEEEecCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcEEEE
Q psy1242         339 HNCFVTTVDSRFLLACGFWDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCFIAS  415 (540)
Q Consensus       339 ~~~~~~spdg~~llasgs~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~l~s  415 (540)
                      -.+++|.|||+ |+++--.+|.|++++..+++...... -...+      ....-++....|+++|....++...++
T Consensus        29 P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~-~~~~~------~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          29 PHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQ-VPEIV------NDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             EEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEE-CTTCC------CCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             ceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeeccc-CCccc------cccCCCCceeeEEeCCCCccCCEEEEE
Confidence            46788999999 56665457999999887766543221 00000      001224567889999843223433343

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=84.16  E-value=12  Score=34.06  Aligned_cols=112  Identities=11%  Similarity=0.056  Sum_probs=64.2

Q ss_pred             EecCCCEEEEEEecCC-----------cEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccCccCCCcE
Q psy1242         344 TTVDSRFLLACGFWDN-----------SFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSECNITADCF  412 (540)
Q Consensus       344 ~spdg~~llasgs~Dg-----------sv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~~~~dg~~  412 (540)
                      ...+|+ +++.|+.+.           .+.+||..+++-......            ...|.......++.+    +|+.
T Consensus        27 ~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~------------~~~~~~~~~~~~~~~----~g~i   89 (387)
T d1k3ia3          27 EPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT------------VTKHDMFCPGISMDG----NGQI   89 (387)
T ss_dssp             ETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE------------ECSCCCSSCEEEECT----TSCE
T ss_pred             EeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC------------CCCcccceeEEEEec----CCcE
Confidence            345777 566666432           267899987754221100            023333334556777    8999


Q ss_pred             EEEEeCC-CcEEEEEcCCCcccccCCCCCCcceEEeccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCC
Q psy1242         413 IASGSAD-CTVLLWHWNARTQSIVGETDTPTPRATLTGHEQPVTSVAISAELGLVVSGSQL------GPVLVHTTFG  482 (540)
Q Consensus       413 l~sgs~D-gtV~lWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~spdg~~lasgs~D------g~v~iw~~~g  482 (540)
                      ++.|+.+ .++.+||..+.....         ...+.... .-.+++..+||++++.|+.+      ..+.+|+...
T Consensus        90 ~v~Gg~~~~~~~~yd~~~~~w~~---------~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          90 VVTGGNDAKKTSLYDSSSDSWIP---------GPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEECSSSTTCEEEEEGGGTEEEE---------CCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EEeecCCCcceeEecCccCcccc---------cccccccc-cccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            9988765 589999987644321         11111111 12345667899998888753      2466776533

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.84  E-value=17  Score=32.97  Aligned_cols=234  Identities=12%  Similarity=0.104  Sum_probs=117.3

Q ss_pred             cCCcEEEEEccCcceEEEEcCCCCCcccCCCCcCCCCCCCCCccccCCCCeeeccCCCCCCccccccCCC------cCcc
Q psy1242         261 HMPSVVTVTANHQFAINRWNPDYAASIQSPSYAETPGSPPGNLPLTLDPILTHPTSNNNAPVPKRHLGDN------FSQK  334 (540)
Q Consensus       261 ~~~~~~lvs~s~D~tv~~W~~~~~~~~~~~~~~~~v~~~~~~~~~s~D~~l~~~g~~~~~~~~~~~~~~~------~~~~  334 (540)
                      |...++.+-+  -.++++.|..+........+.+.|    ....|-.+.++...+.   ...--|.+.+.      |+.+
T Consensus        72 P~~~IiALra--g~~LQiFnletK~klks~~~~e~V----vfWkWis~~~L~lVT~---taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          72 PASKVIALKA--GKTLQIFNIEMKSKMKAHTMTDDV----TFWKWISLNTVALVTD---NAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             SSSSEEEEEE--TTEEEEEETTTTEEEEEEECSSCC----CEEEESSSSEEEEECS---SEEEEEESSSSCCCEEEEECC
T ss_pred             CCCcEEEEec--CCeEEEEehhHhhhhceEEcCCCc----EEEEecCCCEEEEEcC---CceEEEcccCCCCchhhhhhc
Confidence            3344444444  347899998876665555555443    1333444444443321   01111111111      0000


Q ss_pred             ---eeeEEEEEEEecCCCEEEEEEe------cCCcEEEEEccCCeEEEEEecccceeeeeeEEEeeccCcceEEEEeccC
Q psy1242         335 ---LRVRHNCFVTTVDSRFLLACGF------WDNSFRVFSTDNARIVQIIFGHYGVVTSRIVQIIFGHYGVVTCLSRSEC  405 (540)
Q Consensus       335 ---~~v~~~~~~~spdg~~llasgs------~Dgsv~iwd~~~g~~~~~l~~~~~~v~~~~~~~l~~h~~~Vt~l~~sp~  405 (540)
                         ....+.....+++.++++++|=      -.|.+.+|+.+ .+.-+.++||.+....   ..+.|...+.+-++|.. 
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~ieGhaa~F~~---~~~~g~~~~~~lf~fa~-  217 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQ---FKMEGNAEESTLFCFAV-  217 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEE---ECCTTCSSCEEEEEEEE-
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCccccceeeeeEE---EEcCCCCCCceEEEEEE-
Confidence               1223667777889998777652      23567788887 4455667555432211   00011111122222211 


Q ss_pred             ccCCCcEEEEEeCCCcEEEEEcCCCcccccCCCCCCcceEEec---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-C
Q psy1242         406 NITADCFIASGSADCTVLLWHWNARTQSIVGETDTPTPRATLT---GHEQPVTSVAISAELGLVVSGSQLGPVLVHTT-F  481 (540)
Q Consensus       406 ~~~dg~~l~sgs~DgtV~lWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~~spdg~~lasgs~Dg~v~iw~~-~  481 (540)
                         .      +...+.+.|-++.......  .+...+.+..+.   .-.+--.++.+|+....+..-++-|.+.+++. +
T Consensus       218 ---r------~~~~~kLhIiEig~~~~g~--~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleT  286 (327)
T d1utca2         218 ---R------GQAGGKLHIIEVGTPPTGN--QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  286 (327)
T ss_dssp             ---E------ETTEEEEEEEECSCCCTTC--CCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             ---C------CCCCcEEEEEEcCCCccCC--CCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc
Confidence               0      1223577888876522100  000111111111   12344567888998899999999999999876 8


Q ss_pred             CcEEEEecCCCCCCCceEEEEee-CCCEEEEecCCeEEEEe
Q psy1242         482 GDLLRSLDPPSGFASPESVVMSR-EGVIVVNYERGHIAAFT  521 (540)
Q Consensus       482 g~~~~~l~~~~~~~~v~~l~fsp-dg~~l~s~~dg~I~lw~  521 (540)
                      |.++..-+-..+  +|-..+-.. .+.+++...+|.|..-+
T Consensus       287 gt~i~~nRIs~~--~iF~~a~~~~~~Gi~~VNr~GqVl~vs  325 (327)
T d1utca2         287 GTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVC  325 (327)
T ss_dssp             CCEEEEEECCSS--CEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred             ccEEEEeecCCC--ceEEeccCCCCceEEEECCCCeEEEEE
Confidence            988877665555  444333332 34455556666655443