Psyllid ID: psy12432

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQAASVCCTDGPGSSLQRPRMPFERRPSPADFVLTRITTEAPRAADTRTSITITGKGDSVSASQLYHQSSPPLPHMSHPPSCTPLPPAPSQPPDDIKADMRSSQVSATLIV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHcccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHccHEEEcccEEEEEEEEcccEEEEEcccccccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEccccccccccEEEEEcccccccccccccEEcccccccccccccccccccccccccHHHHHHcccccccEEEEEc
Coil and Loop (DISEMBL)
acssrstpkprppsptprpnitfhtyacpptyatwyclngatcftvkigesllyncecadgymgqrcefkdldgsylpsrKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQAASvcctdgpgsslqrprmpferrpspadfvltritteapraadtrtsititgkgdsvsasqlyhqsspplphmshppsctplppapsqppddikadmrssQVSATLIV
Flexible Loop (DISEMBL)
acssrstpkprppsptprpniTFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQaasvcctdgpgsslqrprmpferrpspadfvltritteapraadtrtsititgkgdSVSASQLYHQSSPPLPHMSHPPSCTPLPPAPSQPPDDIKADMRSSQVSATLIV
Low Complexity Region (SEG)
ACssrstpkprppsptprpNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQAASVCCTDGPGSSLQRPRMPFERRPSPADFVLTRITTEAPRAADTRTSITITGKGDSVSASQLYhqsspplphmshppsctplppapsqppDDIKADMRSSQVSATLIV
Disordered region (IsUnstruct)
********************ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQAASVCC*******************************************************************************************************
Disordered Region (DISOPRED)
************************TYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQ*************************************************************************************************************VSATLIV
Disordered Region (DISEMBL)
***************TPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHC**************************MPFERRPSPADFVLTRITTEAPRAADTRTSITITGKGDSVSASQLYHQSSPPLPHMSHPPSCTPLPPAPSQPPDDIKA*************
Disordered Region (DISPRO)
*****************RPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQA***********************RRPSPADFVLTRITTEAPRAADTRTSITITG***********************************QPPDDIKADMRSSQVSATLI*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQAASVCCTDGPGSSLQRPRMPFERRPSPADFVLTRITTEAPRAADTRTSITITGKGDSVSASQLYHQSSPPLPHMSHPPSCTPLPPAPSQPPDDIKADMRSSQVSATLIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q01083	234	Protein spitz OS=Drosophi	no	N/A	0.502	0.491	0.464	3e-28
P42287	295	Protein gurken OS=Drosoph	no	N/A	0.340	0.264	0.325	6e-06
O14511	850	Pro-neuregulin-2, membran	yes	N/A	0.401	0.108	0.313	6e-06
O35569	868	Pro-neuregulin-2, membran	yes	N/A	0.401	0.105	0.280	7e-05
Q00968	1214	Pro-epidermal growth fact	yes	N/A	0.288	0.054	0.361	9e-05
P56974	756	Pro-neuregulin-2, membran	no	N/A	0.401	0.121	0.267	9e-05
P07522	1133	Pro-epidermal growth fact	no	N/A	0.187	0.037	0.456	0.0001
Q61847	704	Meprin A subunit beta OS=	no	N/A	0.406	0.132	0.302	0.0001
P48030	159	Protransforming growth fa	no	N/A	0.454	0.654	0.294	0.0004
P01134	159	Protransforming growth fa	no	N/A	0.550	0.792	0.276	0.0005

>sp|Q01083|SPITZ_DROME Protein spitz OS=Drosophila melanogaster GN=spi PE=1 SV=2

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 86/142 (60%), Gaps = 27/142 (19%)

Query: 1   ACSSRSTPKPR------------PPSPTP---------------RPNITFHTYACPPTYA 33
           ACSSR+ PKPR            PP+  P               RPNITF TY CP T+ 
Sbjct: 28  ACSSRTVPKPRSSISSSMSGTALPPTQAPVTSSTTMRTTTTTTPRPNITFPTYKCPETFD 87

Query: 34  TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASG 93
            WYCLN A CF VKI +  +Y+CECA G+MGQRCE+K++D +YLP R + MLE ASIASG
Sbjct: 88  AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLPKRPRPMLEKASIASG 147

Query: 94  ASIAVFLVVILCFSLYVHCQRR 115
           A  A+  ++ +C + Y+  ++R
Sbjct: 148 AMCALVFMLFVCLAFYLRFEQR 169

Ligand for the EGF receptor (Gurken). Involved in a number of unrelated developmental choices, for example, dorsal-ventral axis formation, glial migration, sensory organ determination, and muscle development. It is required for photoreceptor determination.
Drosophila melanogaster (taxid: 7227)

>sp|P42287|GRK_DROME Protein gurken OS=Drosophila melanogaster GN=grk PE=1 SV=2

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 28  CPPTYATWYCLNGATCFTV-KIGESLLYNCECADGYMGQRCEFKDLDGSYL--PSRKQVM 84
           C   Y T +CLNG  CF    +  ++ ++C C + Y G+RC +K  +G Y+  P   Q  
Sbjct: 183 CSEAYNTSFCLNGGHCFQHPMVNNTVFHSCLCVNDYDGERCAYKSWNGDYIYSPPTAQRK 242

Query: 85  LETASIASGASIAVFLVVILCFSLYV 110
           +  A I     +  F V+++  SLYV
Sbjct: 243 VRMAHI-----VFSFPVLLMLSSLYV 263

Critical for defining the anterior-posterior and dorsal-ventral axes of the egg. May signal directly to dorsal follicle cells through the receptor torpedo (top). During oogenesis this signaling pathway instructs follicle cells to follow a dorsal pathway of development rather than the default ventral pathway.

Drosophila melanogaster (taxid: 7227)

>sp|O14511|NRG2_HUMAN Pro-neuregulin-2, membrane-bound isoform OS=Homo sapiens GN=NRG2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 24  HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQV 83
           H   C  T A  YC+NG  C+ ++    L  +C+C +G+ GQRC  K     Y+P  KQ 
Sbjct: 341 HARKCNET-AKSYCVNGGVCYYIEGINQL--SCKCPNGFFGQRCLEKLPLRLYMPDPKQK 397

Query: 84  MLETAS----IASGASIAVFLVVILCFSLYVHCQRRKKQ 118
             E         +G  +A+ +V I+C   Y   ++++KQ
Sbjct: 398 AEELYQKRVLTITGICVALLVVGIVCVVAYCKTKKQRKQ 436

Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors. Concomitantly recruits ERBB1 and ERBB2 coreceptors, resulting in ligand-stimulated tyrosine phosphorylation and activation of the ERBB receptors. May also promote the heterodimerization with the EGF receptor.

Homo sapiens (taxid: 9606)

>sp|O35569|NRG2_RAT Pro-neuregulin-2, membrane-bound isoform OS=Rattus norvegicus GN=Nrg2 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 15/107 (14%)

Query: 24  HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQV 83
           H   C  T A  YC+NG  C+ ++    L  +C+C +G+ GQRC  K     Y+P  KQ 
Sbjct: 357 HARKCNET-AKSYCVNGGVCYYIEGINQL--SCKCPNGFFGQRCLEKLPLRLYMPDPKQK 413

Query: 84  ML------------ETASIASGASIAVFLVVILCFSLYVHCQRRKKQ 118
            L            +     +G  +A+ +V I+C   Y   +++++Q
Sbjct: 414 HLGFELKEAEELYQKRVLTITGICVALLVVGIVCVVAYCKTKKQRRQ 460

Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors. Concomitantly recruits ERBB1 and ERBB2 coreceptors, resulting in ligand-stimulated tyrosine phosphorylation and activation of the ERBB receptors. May also promote the heterodimerization with the EGF receptor.

Rattus norvegicus (taxid: 10116)

>sp|Q00968|EGF_PIG Pro-epidermal growth factor OS=Sus scrofa GN=EGF PE=1 SV=2

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 6/72 (8%)

Query: 4    SRSTPKPRPPS---PTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
             R  P P PPS      R ++      CPP++   YCL+G  C  ++  +S  Y C C  
Sbjct: 948  GRICPDPTPPSHLGEDGRYSVRNSYSECPPSHDG-YCLHGGVCMYIEAVDS--YACNCVF 1004

Query: 61   GYMGQRCEFKDL 72
            GY+G+RC+ +DL
Sbjct: 1005 GYVGERCQHRDL 1016

EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.

Sus scrofa (taxid: 9823)

>sp|P56974|NRG2_MOUSE Pro-neuregulin-2, membrane-bound isoform OS=Mus musculus GN=Nrg2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 24  HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE------FKDLDGSYL 77
           H   C  T A  YC+NG  C+ ++    L  +C+C  GY G RC+      F    G  L
Sbjct: 249 HARKCNET-AKSYCVNGGVCYYIEGINQL--SCKCPVGYTGDRCQQFAMVNFSKHLGFEL 305

Query: 78  PSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQ 118
              +++  +     +G  +A+ +V I+C   Y   +++++Q
Sbjct: 306 KEAEELYQKRVLTITGICVALLVVGIVCVVAYCKTKKQRRQ 346

Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors. Concomitantly recruits ERBB1 and ERBB2 coreceptors, resulting in ligand-stimulated tyrosine phosphorylation and activation of the ERBB receptors. May also promote the heterodimerization with the EGF receptor.

Mus musculus (taxid: 10090)

>sp|P07522|EGF_RAT Pro-epidermal growth factor OS=Rattus norvegicus GN=Egf PE=1 SV=2

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 27   ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
             CPP+Y   YCLNG  C  V+  +   Y C C  GY+G+RC+ +DL
Sbjct: 978  GCPPSYDG-YCLNGGVCMYVESVDR--YVCNCVIGYIGERCQHRDL 1020

EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.

Rattus norvegicus (taxid: 10116)

>sp|Q61847|MEP1B_MOUSE Meprin A subunit beta OS=Mus musculus GN=Mep1b PE=1 SV=2

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 26/119 (21%)

Query: 15  PTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADG----YMGQRCEFK 70
           P P P +  H  AC        C NG  C  V+ G +    C+C  G    YMG+RCE  
Sbjct: 599 PDPVPTLAVHN-ACSEVV----CQNGGIC-VVQDGRA---ECKCPAGEDWWYMGKRCE-- 647

Query: 71  DLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRK--KQAQAASVCCT 127
                    ++    +T  IA  +++ VF V+++   + V+C RRK  K+A+A +   T
Sbjct: 648 ---------KRGSTRDTVIIAVSSTVTVFAVMLIITLVSVYCTRRKYRKKARANTAAMT 697

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 6

EC: 3

>sp|P48030|TGFA_MOUSE Protransforming growth factor alpha OS=Mus musculus GN=Tgfa PE=1 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 5   RSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMG 64
            ++  P   SP     ++ H   CP ++ T YC +G   F V+  +     C C  GY+G
Sbjct: 24  ENSTSPLSDSPVAAAVVS-HFNKCPDSH-TQYCFHGTCRFLVQEEKP---ACVCHSGYVG 78

Query: 65  QRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFL---VVILCFSLYVHCQ 113
            RCE  DL      S+K+  +    + S  ++AV +   V+I C  L  HC+
Sbjct: 79  VRCEHADLLAVVAASQKKQAITALVVVSIVALAVLIITCVLIHCCQLRKHCE 130

TGF alpha is a mitogenic polypeptide that is able to bind to the EGF receptor/EGFR and to act synergistically with TGF beta to promote anchorage-independent cell proliferation in soft agar.

Mus musculus (taxid: 10090)

>sp|P01134|TGFA_RAT Protransforming growth factor alpha OS=Rattus norvegicus GN=Tgfa PE=1 SV=2

 Score = 44.7 bits (104), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 5   RSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMG 64
            ++  P   SP     ++ H   CP ++ T YC +G   F V+  +     C C  GY+G
Sbjct: 24  ENSTSPLSDSPVAAAVVS-HFNKCPDSH-TQYCFHGTCRFLVQEEKP---ACVCHSGYVG 78

Query: 65  QRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQAASV 124
            RCE  DL      S+K+  +    + S  ++AV   +I C  ++  CQ RK      ++
Sbjct: 79  VRCEHADLLAVVAASQKKQAITALVVVSIVALAVL--IITCVLIHC-CQVRKHCEWCRAL 135

Query: 125 CCTDGPGSSLQRPR 138
            C     S+L + R
Sbjct: 136 VCRHEKPSALLKGR 149

TGF alpha is a mitogenic polypeptide that is able to bind to the EGF receptor/EGFR and to act synergistically with TGF beta to promote anchorage-independent cell proliferation in soft agar.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
297499581	173	TGF-alpha [Gryllus bimaculatus]	0.611	0.809	0.751	1e-58
157125095	224	hypothetical protein AaeL_AAEL010067 [Ae	0.624	0.638	0.659	4e-48
170032640	210	conserved hypothetical protein [Culex qu	0.524	0.571	0.758	4e-48
307201545	231	Protein spitz [Harpegnathos saltator]	0.711	0.705	0.627	2e-47
328707918	288	PREDICTED: hypothetical protein LOC10057	0.703	0.559	0.568	5e-47
340727767	216	PREDICTED: protein spitz-like [Bombus te	0.659	0.699	0.673	1e-46
350418171	216	PREDICTED: protein spitz-like [Bombus im	0.659	0.699	0.673	1e-46
383849621	216	PREDICTED: protein spitz-like [Megachile	0.659	0.699	0.673	2e-46
242024565	273	conserved hypothetical protein [Pediculu	0.620	0.520	0.713	4e-46
307178475	216	Protein spitz [Camponotus floridanus]	0.615	0.652	0.698	1e-45

>gi|297499581|gb|ADI43984.1| TGF-alpha [Gryllus bimaculatus]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/145 (75%), Positives = 124/145 (85%), Gaps = 5/145 (3%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSRSTPKPRPPSPT RPNITFHTYACPP +ATWYCLNGATCFTV IGESLLYNCECAD
Sbjct: 2   ACSSRSTPKPRPPSPTARPNITFHTYACPPAHATWYCLNGATCFTVNIGESLLYNCECAD 61

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           GYMGQRCEFKDLDGSYLPSR++VMLETASIA GA+IAVFLVV++C ++Y+H QR+ K+++
Sbjct: 62  GYMGQRCEFKDLDGSYLPSRQRVMLETASIAGGATIAVFLVVLVCIAVYIHFQRKLKESR 121

Query: 121 AASVCCTDGPGSSLQRPRMPFERRP 145
           A    C DG    L+  + PF R P
Sbjct: 122 AT---CVDGSSHDLE--KRPFSRDP 141

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125095|ref|XP_001660618.1| hypothetical protein AaeL_AAEL010067 [Aedes aegypti] gi|108873777|gb|EAT38002.1| AAEL010067-PA [Aedes aegypti]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 116/147 (78%), Gaps = 4/147 (2%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSR+TPKPRPPSPT RPNITFHTY CPP YA WYCLN ATCFTVKIG+SLLYNCECAD
Sbjct: 63  ACSSRTTPKPRPPSPTARPNITFHTYKCPPAYAAWYCLNEATCFTVKIGDSLLYNCECAD 122

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           GYMG RCE+KDLDGSYLP+R +VMLETASIASGA +A+ L VI+   + VH  ++KK+ +
Sbjct: 123 GYMGPRCEYKDLDGSYLPTRPRVMLETASIASGAIVALVLAVIVWCYICVHKHQQKKRLE 182

Query: 121 AAS--VCCTDGPGSSLQRPRMPFERRP 145
            A+  V   DG   +++   +P  +RP
Sbjct: 183 TANGGVDTVDGVLRTVRSENLP--KRP 207

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032640|ref|XP_001844188.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873018|gb|EDS36401.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 103/120 (85%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSR+TPKPRPPSPT RPNITFHTY CPP YA WYCLN ATCFTVKIG+SLLYNCECAD
Sbjct: 46  ACSSRTTPKPRPPSPTARPNITFHTYKCPPAYAAWYCLNDATCFTVKIGDSLLYNCECAD 105

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           GYMG RCE+KDLDGSYLP+R +VMLETASIASGA +AV L  I+C  + VH  ++KK+ +
Sbjct: 106 GYMGPRCEYKDLDGSYLPTRPRVMLETASIASGAIVAVVLATIVCCYICVHKHQQKKRLE 165

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201545|gb|EFN81308.1| Protein spitz [Harpegnathos saltator]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 128/169 (75%), Gaps = 6/169 (3%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSRSTPKPRPP+PT RPNITFH Y CPP YA WYCLNGATCFTVKI +SLLYNC CA+
Sbjct: 41  ACSSRSTPKPRPPTPTDRPNITFHMYTCPPDYAEWYCLNGATCFTVKIVDSLLYNCLCAN 100

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           GY+GQRCEFKDLDGSYLPSR++VMLETASIA GA+IAV LVVI+C + Y+HC+R++K+ +
Sbjct: 101 GYIGQRCEFKDLDGSYLPSRQRVMLETASIAGGATIAVLLVVIICITAYIHCKRKQKELR 160

Query: 121 AASVCC--TDGPGSSLQRPRM-PFERRPSPADFVLTRITTEAPRAADTR 166
           ++S C    DGPG   + P + PF  R  P    + +    +     TR
Sbjct: 161 SSSSCIDTVDGPG---RDPEVRPFSNRSRPLTIFMAKSLNSSATIEQTR 206

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707918|ref|XP_003243540.1| PREDICTED: hypothetical protein LOC100575788 [Acyrthosiphon pisum]

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 95/167 (56%), Positives = 116/167 (69%), Gaps = 6/167 (3%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSRS PKPRP  PT RPN+TFHT  CP  YA WYCLN ATCF + IGES+LYNCEC D
Sbjct: 106 ACSSRSMPKPRPLQPTERPNVTFHTTPCPTVYAKWYCLNEATCFAIAIGESVLYNCECPD 165

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQR-RKKQA 119
           G+MGQRCEFK+LDGSY  +R+QVMLE+ASIASG S+AV LV I+C + YV  +R RK + 
Sbjct: 166 GFMGQRCEFKNLDGSYTTARRQVMLESASIASGVSVAVLLVFIICTTFYVRSKRQRKLKL 225

Query: 120 QAASVCCTDGPGSSLQRPRMPFERRPSPADFVL---TRITTEAPRAA 163
            AA V   DG  +  +  + PF  RP      +   T IT ++ R++
Sbjct: 226 NAADVSMVDGNWTDAE--KRPFSYRPKHTIITIPLKTVITEQSTRSS 270

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727767|ref|XP_003402207.1| PREDICTED: protein spitz-like [Bombus terrestris]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 127/156 (81%), Gaps = 5/156 (3%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSRSTPKPRPP+PTPRPNITFH Y CPP YA WYCLNGATCFTVKI +SLLYNC CA+
Sbjct: 27  ACSSRSTPKPRPPTPTPRPNITFHMYTCPPDYAEWYCLNGATCFTVKIVDSLLYNCLCAN 86

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           GY+GQRCEFKDLDGSYLPSR++VMLETASIA GA+IAVFLVVI+C + Y+HC+R++K+ +
Sbjct: 87  GYIGQRCEFKDLDGSYLPSRQRVMLETASIAGGATIAVFLVVIICIAAYIHCKRKQKELR 146

Query: 121 AAS-VCCTDGPGSSLQRPRM-PFERRPSPADFVLTR 154
           +++ V   DGPG   + P + PF  R       +T+
Sbjct: 147 SSNCVDTVDGPG---RDPELRPFSNRSRSLMIFMTK 179

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418171|ref|XP_003491770.1| PREDICTED: protein spitz-like [Bombus impatiens]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 127/156 (81%), Gaps = 5/156 (3%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSRSTPKPRPP+PTPRPNITFH Y CPP YA WYCLNGATCFTVKI +SLLYNC CA+
Sbjct: 27  ACSSRSTPKPRPPTPTPRPNITFHMYTCPPDYAEWYCLNGATCFTVKIVDSLLYNCLCAN 86

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           GY+GQRCEFKDLDGSYLPSR++VMLETASIA GA+IAVFLVVI+C + Y+HC+R++K+ +
Sbjct: 87  GYIGQRCEFKDLDGSYLPSRQRVMLETASIAGGATIAVFLVVIICIAAYIHCKRKQKELR 146

Query: 121 AAS-VCCTDGPGSSLQRPRM-PFERRPSPADFVLTR 154
           +++ V   DGPG   + P + PF  R       +T+
Sbjct: 147 SSNCVDTVDGPG---RDPELRPFSNRSRSLMIFMTK 179

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849621|ref|XP_003700443.1| PREDICTED: protein spitz-like [Megachile rotundata]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 127/156 (81%), Gaps = 5/156 (3%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSRSTPKPRPP+PTPRPNITFH Y CPP YA WYCLNGATCFTVKI +SLLYNC CA+
Sbjct: 27  ACSSRSTPKPRPPTPTPRPNITFHMYTCPPDYAEWYCLNGATCFTVKIVDSLLYNCLCAN 86

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           GY+GQRCEFKDLDGSYLPSR++VMLETASIA GA+IAVFLVVI+C + Y+HC+R++K+ +
Sbjct: 87  GYIGQRCEFKDLDGSYLPSRQRVMLETASIAGGATIAVFLVVIICIAAYIHCKRKQKELR 146

Query: 121 AAS-VCCTDGPGSSLQRPRM-PFERRPSPADFVLTR 154
           +++ V   DGPG   + P + PF  R       +T+
Sbjct: 147 SSNCVDTVDGPG---RDPELRPFSNRNRSLMIFMTK 179

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024565|ref|XP_002432698.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518168|gb|EEB19960.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/143 (71%), Positives = 117/143 (81%), Gaps = 1/143 (0%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSR+TPKPRPP P+ RPNITF TY CPPTYA WYCLNGATCFT+KI ESLLYNCECA+
Sbjct: 60  ACSSRNTPKPRPPPPSARPNITFPTYTCPPTYAAWYCLNGATCFTIKIEESLLYNCECAE 119

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           G+MGQRCEFKDLDGSYLPSR++V+LETASIA GA+IAVFLVVI C +LY+H QR+ K+ +
Sbjct: 120 GFMGQRCEFKDLDGSYLPSRQRVLLETASIAGGATIAVFLVVIACVTLYLHYQRKSKEKR 179

Query: 121 AASVCCTDGPGSSLQRPRMPFER 143
            AS    DG G+     R  F R
Sbjct: 180 IASSDRKDG-GAERGLERRAFNR 201

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178475|gb|EFN67164.1| Protein spitz [Camponotus floridanus]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 102/146 (69%), Positives = 122/146 (83%), Gaps = 5/146 (3%)

Query: 1   ACSSRSTPKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECAD 60
           ACSSRSTPKPRPP+PT RPNITFH Y CP  YA WYCLNGATCFTVKI +SLLYNC CA+
Sbjct: 27  ACSSRSTPKPRPPTPTDRPNITFHMYTCPQDYADWYCLNGATCFTVKIVDSLLYNCLCAN 86

Query: 61  GYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ 120
           GY+GQRCEFKDLDGSYLPSR++V+LETASIA GA+IAVFLVVI+C + Y+HC+R++K+ +
Sbjct: 87  GYIGQRCEFKDLDGSYLPSRQRVLLETASIAGGATIAVFLVVIICIAAYIHCKRKQKELR 146

Query: 121 AAS-VCCTDGPGSSLQRPRM-PFERR 144
           ++S V   DGPG   + P + PF  R
Sbjct: 147 SSSNVDTVDGPG---RDPELRPFSNR 169

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
FB|FBgn0052179	217	Krn "Keren" [Drosophila melano	0.480	0.506	0.544	7.7e-32
FB|FBgn0005672	234	spi "spitz" [Drosophila melano	0.436	0.427	0.544	1.4e-29
ZFIN|ZDB-GENE-050311-1	178	btc "betacellulin, epidermal g	0.393	0.505	0.29	2.9e-09
MGI|MGI:98724	159	Tgfa "transforming growth fact	0.467	0.672	0.290	5.3e-08
RGD|3849	159	Tgfa "transforming growth fact	0.467	0.672	0.290	6.8e-08
UNIPROTKB|F1NEP5	1245	EGF "Uncharacterized protein"	0.349	0.064	0.379	9.1e-08
UNIPROTKB|P01135	160	TGFA "Protransforming growth f	0.467	0.668	0.273	1.8e-07
UNIPROTKB|F1SLD3	125	TGFA "Protransforming growth f	0.445	0.816	0.276	3.8e-07
UNIPROTKB|Q06922	160	TGFA "Protransforming growth f	0.467	0.668	0.264	6.1e-07
UNIPROTKB|P55244	121	TGFA "Protransforming growth f	0.445	0.842	0.276	6.1e-07

FB|FBgn0052179 Krn "Keren" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 61/112 (54%), Positives = 81/112 (72%)

Query:    20 NITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPS 79
             N+TF  +ACPPTY  WYCLN  TCFTVKI   +LYNCECA G+MG RCE+K++DGSYLP+
Sbjct:    54 NVTFPIFACPPTYVAWYCLNDGTCFTVKIHNEILYNCECALGFMGPRCEYKEIDGSYLPT 113

Query:    80 RKQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQA--QAASVCCTDG 129
             R +VMLE ASI SGA++A+  + + C  LY+  ++ +KQ    + +   TDG
Sbjct:   114 RNRVMLEKASIVSGATLALLFMAMCCVVLYLRHEKLQKQKLHDSTTTTTTDG 165

GO:0005886 "plasma membrane" evidence=ISS

GO:0005154 "epidermal growth factor receptor binding" evidence=ISS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0008083 "growth factor activity" evidence=ISS

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IGI;IMP

GO:0000165 "MAPK cascade" evidence=IDA

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0042058 "regulation of epidermal growth factor receptor signaling pathway" evidence=IGI

GO:0048749 "compound eye development" evidence=IGI

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

FB|FBgn0005672 spi "spitz" [Drosophila melanogaster (taxid:7227)]

 Score = 304 (112.1 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 55/101 (54%), Positives = 72/101 (71%)

Query:    20 NITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPS 79
             NITF TY CP T+  WYCLN A CF VKI +  +Y+CECA G+MGQRCE+K++D +YLP 
Sbjct:    74 NITFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLPK 133

Query:    80 RKQVMLETASIASGASIAVFLVVILCFSLYVHC-QRRKKQA 119
             R + MLE ASIASGA  A+  ++ +C + Y+   QR  K+A
Sbjct:   134 RPRPMLEKASIASGAMCALVFMLFVCLAFYLRFEQRAAKKA 174

GO:0005576 "extracellular region" evidence=NAS;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=NAS;TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=NAS;TAS

GO:0061331 "epithelial cell proliferation involved in Malpighian tubule morphogenesis" evidence=IMP

GO:0045742 "positive regulation of epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0008317 "gurken receptor binding" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0046845 "branched duct epithelial cell fate determination, open tracheal system" evidence=TAS

GO:0007421 "stomatogastric nervous system development" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=NAS

GO:0005794 "Golgi apparatus" evidence=IGI

GO:0005783 "endoplasmic reticulum" evidence=NAS;IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=NAS

GO:0016330 "second mitotic wave involved in compound eye morphogenesis" evidence=NAS

GO:0045470 "R8 cell-mediated photoreceptor organization" evidence=NAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0007438 "oenocyte development" evidence=IGI;IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP;NAS

GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0007424 "open tracheal system development" evidence=TAS

GO:0035225 "determination of genital disc primordium" evidence=IMP

GO:0035277 "spiracle morphogenesis, open tracheal system" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0048865 "stem cell fate commitment" evidence=IMP

GO:0003015 "heart process" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-050311-1 btc "betacellulin, epidermal growth factor family member" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 29/100 (29%), Positives = 54/100 (54%)

Query:    24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQV 83
             H  ACP  Y   +C++G   F   I E    +C C  GY+G RCE+ D+D  ++  R+++
Sbjct:    59 HFSACPKEYKH-FCIHGVCRF---IEEQNTPSCRCEKGYIGSRCEYLDID-FHVGERRKI 113

Query:    84 MLETASIASGASIAVFLVVILCFSL---YVHCQRRKKQAQ 120
             ++  A + +G    + L++ +C      Y  C+++K++ Q
Sbjct:   114 VI--ACVVAGLVFLILLIIFICVCTHKRYRPCRKKKRKKQ 151

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:98724 Tgfa "transforming growth factor alpha" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 34/117 (29%), Positives = 57/117 (48%)

Query:    21 ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSR 80
             +  H   CP ++ T YC +G   F V+  +     C C  GY+G RCE  DL      S+
Sbjct:    39 VVSHFNKCPDSH-TQYCFHGTCRFLVQEEKPA---CVCHSGYVGVRCEHADLLAVVAASQ 94

Query:    81 KQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ--AASVCCTDGPGSSLQ 135
             K+  +    + S  ++AV  ++I C  + +HC + +K  +   A VC  + P + L+
Sbjct:    95 KKQAITALVVVSIVALAV--LIITC--VLIHCCQLRKHCEWCRALVCRHEKPSALLK 147

GO:0000165 "MAPK cascade" evidence=ISO

GO:0000187 "activation of MAPK activity" evidence=ISO

GO:0001525 "angiogenesis" evidence=IDA

GO:0001948 "glycoprotein binding" evidence=IDA

GO:0004708 "MAP kinase kinase activity" evidence=ISO

GO:0005154 "epidermal growth factor receptor binding" evidence=ISO

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=ISO

GO:0008083 "growth factor activity" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=ISO

GO:0045840 "positive regulation of mitosis" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048523 "negative regulation of cellular process" evidence=ISO

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISO

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IGI

RGD|3849 Tgfa "transforming growth factor alpha" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 34/117 (29%), Positives = 57/117 (48%)

Query:    21 ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSR 80
             +  H   CP ++ T YC +G   F V+  +     C C  GY+G RCE  DL      S+
Sbjct:    39 VVSHFNKCPDSH-TQYCFHGTCRFLVQEEKPA---CVCHSGYVGVRCEHADLLAVVAASQ 94

Query:    81 KQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ--AASVCCTDGPGSSLQ 135
             K+  +    + S  ++AV  ++I C  + +HC + +K  +   A VC  + P + L+
Sbjct:    95 KKQAITALVVVSIVALAV--LIITC--VLIHCCQVRKHCEWCRALVCRHEKPSALLK 147

GO:0000165 "MAPK cascade" evidence=ISO

GO:0000187 "activation of MAPK activity" evidence=ISO;ISS

GO:0001525 "angiogenesis" evidence=IEA;ISO

GO:0001948 "glycoprotein binding" evidence=IEA;ISO

GO:0004708 "MAP kinase kinase activity" evidence=ISO;ISS

GO:0005154 "epidermal growth factor receptor binding" evidence=ISO;ISS;IDA;TAS

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0008083 "growth factor activity" evidence=ISO;ISS;TAS

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0016323 "basolateral plasma membrane" evidence=IEA;ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA;ISO

GO:0042060 "wound healing" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=ISO;ISS

GO:0045840 "positive regulation of mitosis" evidence=ISO;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0048523 "negative regulation of cellular process" evidence=IDA

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISO;ISS

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1NEP5 EGF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 136 (52.9 bits), Expect = 9.1e-08, P = 9.1e-08
 Identities = 33/87 (37%), Positives = 46/87 (52%)

Query:    28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLET 87
             CPP Y + YCL+G  C  V   +   Y C C  GY+G+RC+F DL+       ++V +  
Sbjct:  1031 CPPAYDS-YCLHGGVCNYVSDLQD--YACNCVTGYVGERCQFSDLEWWEQQHAERVKVRN 1087

Query:    88 ASIASGASIAVFLVVILCFSLYVHCQR 114
              +IA    IAV L  +L  SL  +C R
Sbjct:  1088 ITIA--VCIAVLL--LLLGSLAAYCSR 1110

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000186 "activation of MAPKK activity" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0005154 "epidermal growth factor receptor binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IEA

GO:0007262 "STAT protein import into nucleus" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0021940 "positive regulation of cerebellar granule cell precursor proliferation" evidence=IEA

GO:0035413 "positive regulation of catenin import into nucleus" evidence=IEA

GO:0043388 "positive regulation of DNA binding" evidence=IEA

GO:0043406 "positive regulation of MAP kinase activity" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0045840 "positive regulation of mitosis" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0051048 "negative regulation of secretion" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:0090279 "regulation of calcium ion import" evidence=IEA

GO:0090370 "negative regulation of cholesterol efflux" evidence=IEA

GO:1900127 "positive regulation of hyaluronan biosynthetic process" evidence=IEA

GO:2000008 "regulation of protein localization to cell surface" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|P01135 TGFA "Protransforming growth factor alpha" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 32/117 (27%), Positives = 57/117 (48%)

Query:    21 ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSR 80
             +  H   CP ++ T +C +G   F V+  +     C C  GY+G RCE  DL      S+
Sbjct:    40 VVSHFNDCPDSH-TQFCFHGTCRFLVQEDKPA---CVCHSGYVGARCEHADLLAVVAASQ 95

Query:    81 KQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ--AASVCCTDGPGSSLQ 135
             K+  +    + S  ++AV  ++I C  + +HC + +K  +   A +C  + P + L+
Sbjct:    96 KKQAITALVVVSIVALAV--LIITC--VLIHCCQVRKHCEWCRALICRHEKPSALLK 148

GO:0016021 "integral to membrane" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0005154 "epidermal growth factor receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=NAS

GO:0000187 "activation of MAPK activity" evidence=IDA

GO:0004708 "MAP kinase kinase activity" evidence=IDA

GO:0008083 "growth factor activity" evidence=IDA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IDA

GO:0045840 "positive regulation of mitosis" evidence=IDA

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=IDA

GO:0008283 "cell proliferation" evidence=TAS

GO:0005615 "extracellular space" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0000165 "MAPK cascade" evidence=IDA

UNIPROTKB|F1SLD3 TGFA "Protransforming growth factor alpha" [Sus scrofa (taxid:9823)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 31/112 (27%), Positives = 54/112 (48%)

Query:    21 ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSR 80
             +  H   CP +++  +C +G   F V+  +     C C  GY+G RCE  DL      S+
Sbjct:     9 VVSHFNDCPDSHSQ-FCFHGTCRFLVQEDKPA---CVCHSGYVGARCEHADLLAVVAASQ 64

Query:    81 KQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ--AASVCCTDGP 130
             K+  +    + S  ++AV  ++I C  + +HC R +K  +   A +C  + P
Sbjct:    65 KKQAITALVVVSIVALAV--LIITC--VLIHCCRFRKHCEWCRALICRHEKP 112

GO:0060749 "mammary gland alveolus development" evidence=IEA

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045840 "positive regulation of mitosis" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005154 "epidermal growth factor receptor binding" evidence=IEA

GO:0004708 "MAP kinase kinase activity" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

UNIPROTKB|Q06922 TGFA "Protransforming growth factor alpha" [Sus scrofa (taxid:9823)]

 Score = 116 (45.9 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 31/117 (26%), Positives = 57/117 (48%)

Query:    21 ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSR 80
             +  H   CP +++  +C +G   F V+  +     C C  GY+G RCE  DL      S+
Sbjct:    40 VVSHFNDCPDSHSQ-FCFHGTCRFLVQEDKPA---CVCHSGYVGARCEHADLLAVVAASQ 95

Query:    81 KQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ--AASVCCTDGPGSSLQ 135
             K+  +    + S  ++AV  ++I C  + +HC + +K  +   A +C  + P + L+
Sbjct:    96 KKQAITALVVVSIVALAV--LIITC--VLIHCCQVRKHCEWCRALICRHEKPSALLK 148

GO:0000165 "MAPK cascade" evidence=ISS

GO:0004708 "MAP kinase kinase activity" evidence=ISS

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISS

GO:0045840 "positive regulation of mitosis" evidence=ISS

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=ISS

GO:0008083 "growth factor activity" evidence=ISS

GO:0000187 "activation of MAPK activity" evidence=ISS

GO:0005154 "epidermal growth factor receptor binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P55244 TGFA "Protransforming growth factor alpha" [Macaca mulatta (taxid:9544)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 31/112 (27%), Positives = 53/112 (47%)

Query:    21 ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSR 80
             +  H   CP ++ T +C +G   F V+        C C  GY+G RCE  DL      S+
Sbjct:    17 VVSHFNDCPDSH-TQFCFHGTCRFLVQEDRPA---CVCHSGYVGARCEHADLLAVVAASQ 72

Query:    81 KQVMLETASIASGASIAVFLVVILCFSLYVHCQRRKKQAQ--AASVCCTDGP 130
             K+  +    + S  ++AV  ++I C  + +HC + +K  +   A +C  + P
Sbjct:    73 KKQAITALVVVSIVALAV--LIITC--VLIHCCQVRKHCEWCRALICRHEKP 120

GO:0000165 "MAPK cascade" evidence=ISS

GO:0000187 "activation of MAPK activity" evidence=ISS

GO:0004708 "MAP kinase kinase activity" evidence=ISS

GO:0005154 "epidermal growth factor receptor binding" evidence=ISS

GO:0008083 "growth factor activity" evidence=ISS

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=ISS

GO:0045840 "positive regulation of mitosis" evidence=ISS

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG1219|consensus	4289		99.43
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	99.34
PF02158	404	Neuregulin: Neuregulin family; InterPro: IPR002154	98.76
PHA02887	126	EGF-like protein; Provisional	98.43
KOG1219|consensus	4289		98.21
KOG4289|consensus	2531		97.87
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.73
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	96.76
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	96.46
KOG4289|consensus	2531		96.22
cd00053	36	EGF Epidermal growth factor domain, found in epide	96.14
PF12955	103	DUF3844: Domain of unknown function (DUF3844); Int	96.01
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	95.78
smart00181	35	EGF Epidermal growth factor-like domain.	95.19
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	95.17
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	94.78
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	94.69
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	94.49
PF14991	118	MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P	94.01
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	93.98
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	93.43
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	93.14
KOG1214|consensus	1289		92.96
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	92.61
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	91.33
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	89.96
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	89.21
PF15069	143	FAM163: FAM163 family	89.03
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	88.76
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	88.7
KOG2052|consensus	513		88.46
PF12662	24	cEGF: Complement Clr-like EGF-like	88.4
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	87.4
KOG3516|consensus	1306		87.02
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	86.22
KOG3514|consensus	1591		86.2
PF00558	81	Vpu: Vpu protein; InterPro: IPR008187 The Human im	85.42
KOG3607|consensus	716		84.81
PF15330	107	SIT: SHP2-interacting transmembrane adaptor protei	84.74
PF05545	49	FixQ: Cbb3-type cytochrome oxidase component FixQ;	84.17
KOG1225|consensus	525		83.29
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	82.9
KOG1225|consensus	525		81.9
KOG1217|consensus	487		80.73
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	80.43

>KOG1219|consensus

Probab=99.43  E-value=5e-13  Score=141.87  Aligned_cols=170  Identities=21%  Similarity=0.381  Sum_probs=99.0

Q ss_pred             CCceeeCCCCCCC------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC----C-------------
Q psy12432         22 TFHTYACPPTYAT------------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD----L-------------   72 (229)
Q Consensus        22 ~gy~C~C~~gy~g------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~----~-------------   72 (229)
                      .||.|+|+.-|.|            +||++||+|....    ++|.|.|+.||+|.|||...    .             
T Consensus      3884 ggy~CkCpsqysG~~CEi~~epC~snPC~~GgtCip~~----n~f~CnC~~gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~ 3959 (4289)
T KOG1219|consen 3884 GGYKCKCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFY----NGFLCNCPNGYTGKRCEARGISECSKNVCGTGGQCINI 3959 (4289)
T ss_pred             CceEEeCcccccCcccccccccccCCCCCCCCEEEecC----CCeeEeCCCCccCceeecccccccccccccCCceeecc
Confidence            3899999999997            5999999998763    37999999999999999872    1             


Q ss_pred             CCCcc----cc-c----------chhhhHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccCCCCCCCC
Q psy12432         73 DGSYL----PS-R----------KQVMLETASI--ASGASIAVFLVVILCFSLYVHCQRRKKQAQAASVCCTDGPGSSLQ  135 (229)
Q Consensus        73 ~~~~~----p~-~----------~~~~~~~~~I--a~gI~V~lLLVlii~vvly~~~kRrk~~k~~~~~~~~d~~~~~~~  135 (229)
                      .|+|+    +. .          ......|.+.  +++|+|+|++ ++++++++|+++|++.+|+-...+-+|--     
T Consensus      3960 ~gsf~CncT~g~~gr~c~~~~pni~~~~~~~gkaEli~I~V~l~~-ifilvvlf~~crKk~~rkky~~~~~~~ll----- 4033 (4289)
T KOG1219|consen 3960 PGSFHCNCTPGILGRTCCAEKPNILSTVLWLGKAELIIIIVLLAL-IFILVVLFWKCRKKNSRKKYGAHCPVDLL----- 4033 (4289)
T ss_pred             CCceEeccChhHhcccCccccCccccccchhcccceeehhHHHHH-HHHHHHHHHhhhhhccCCcccccCChhHH-----
Confidence            11121    10 0          0112233222  2334444433 33444466666666555544333322210     


Q ss_pred             CCCCCCccCCCCcceeeeeccccCCCCCCCCCccc--ccCCCCCCcCCCccccCCCCCC-CCCCCCCCCCCCCCCC
Q psy12432        136 RPRMPFERRPSPADFVLTRITTEAPRAADTRTSIT--ITGKGDSVSASQLYHQSSPPLP-HMSHPPSCTPLPPAPS  208 (229)
Q Consensus       136 ~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~~~~ld--~~~~g~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~  208 (229)
                             ++++=....|++-----|++...+||||  ..+.+..++||.+|++++..+. .-|-+|--.|++|--|
T Consensus      4034 -------~rn~nVy~~v~PqvplrP~sytsrnNld~n~~s~ssv~~e~~Tf~Pes~~r~vvcSvapnlp~pspc~S 4102 (4289)
T KOG1219|consen 4034 -------RRNTNVYVPVVPQVPLRPRSYTSRNNLDSNFISTSSVPTELVTFRPESQVRPVVCSVAPNLPPPSPCGS 4102 (4289)
T ss_pred             -------hcCCCccccCCCCCCcCCcccccccccCcCCcccCCccccccccCCCccccceeeccCCCCCCCCCCCC
Confidence                   0111111111110001133444789999  8899999999999999999877 5555555444443333

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=99.34  E-value=1.4e-12  Score=104.71  Aligned_cols=90  Identities=27%  Similarity=0.449  Sum_probs=58.7

Q ss_pred             ceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCCCCcccccchhhhHHHHHhhhHHHHHHHHHH
Q psy12432         24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETASIASGASIAVFLVVI  103 (229)
Q Consensus        24 y~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~~~~~p~~~~~~~~~~~Ia~gI~V~lLLVli  103 (229)
                      .+-.|++.|+ +||+|| +|+.+...  ..+.|+|..||+|+|||+.++. .|.+..+.... +..|+..+++++|++++
T Consensus        41 ~i~~Cp~ey~-~YClHG-~C~yI~dl--~~~~CrC~~GYtGeRCEh~dLl-~~~~~~k~n~~-t~Yia~~~il~il~~i~  114 (139)
T PHA03099         41 AIRLCGPEGD-GYCLHG-DCIHARDI--DGMYCRCSHGYTGIRCQHVVLV-DYQRSEKPNTT-TSYIPSPGIVLVLVGII  114 (139)
T ss_pred             ccccCChhhC-CEeECC-EEEeeccC--CCceeECCCCcccccccceeee-eeeccccccch-hhhhhhhHHHHHHHHHH
Confidence            3789999996 899997 89988643  3799999999999999998753 34443333322 34555444455555444


Q ss_pred             HHHHHHHHHHHhhhhh
Q psy12432        104 LCFSLYVHCQRRKKQA  119 (229)
Q Consensus       104 i~vvly~~~kRrk~~k  119 (229)
                      +.+++++.++..||+|
T Consensus       115 is~~~~~~yr~~r~~~  130 (139)
T PHA03099        115 ITCCLLSVYRFTRRTK  130 (139)
T ss_pred             HHHHHHhhheeeeccc
Confidence            4444444444433333

>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]

Probab=98.76  E-value=1.4e-09  Score=101.16  Aligned_cols=83  Identities=16%  Similarity=0.283  Sum_probs=0.4

Q ss_pred             ccchhhhHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhhhhhh--cc-------c--cccCCCCCC--CCC-CCCCC--
Q psy12432         79 SRKQVMLETASIASGASIAVFLVVILCFS-LYVHCQRRKKQAQA--AS-------V--CCTDGPGSS--LQR-PRMPF--  141 (229)
Q Consensus        79 ~~~~~~~~~~~Ia~gI~V~lLLVlii~vv-ly~~~kRrk~~k~~--~~-------~--~~~d~~~~~--~~~-~~~~~--  141 (229)
                      ++++|++     |.||||+||||+|+|++ +||+.||++|+++.  .+       +  .+.+||++.  ..+ +++||  
T Consensus         5 YQkrVLT-----ITgIcvaLlVVGi~Cvv~aYCKTKKQRkklh~hLkqs~~~~~~n~~n~angp~~p~n~pp~e~vQlvn   79 (404)
T PF02158_consen    5 YQKRVLT-----ITGICVALLVVGIVCVVDAYCKTKKQRKKLHEHLKQSQRSKNYNLRNLANGPNHPRNPPPQEEVQLVN   79 (404)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             hhhhhhh-----hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccchhhhhhhhcCCCCCCCCCccccccccc
Confidence            4566665     88999999999999999 99999999888753  22       2  246777653  444 88886  


Q ss_pred             --ccCCCCcceeeeeccccCCCCCCCC
Q psy12432        142 --ERRPSPADFVLTRITTEAPRAADTR  166 (229)
Q Consensus       142 --~~~~~p~~~~~~~~~~e~~~~~~~~  166 (229)
                        .+|+++++++|++..+|..|.+...
T Consensus        80 ~y~SKn~~~t~~v~~~~tEtSFs~Sh~  106 (404)
T PF02158_consen   80 QYISKNVRHTEHVIEKETETSFSGSHS  106 (404)
T ss_dssp             ---------------------------
T ss_pred             cccccCCCCchhhhccccccccCCCCc
Confidence              6899999999999999999977553

Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.

>PHA02887 EGF-like protein; Provisional

Probab=98.43  E-value=1.5e-07  Score=74.81  Aligned_cols=60  Identities=20%  Similarity=0.417  Sum_probs=48.0

Q ss_pred             CCCCCCCCCcCCCCCCceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432          8 PKPRPPSPTPRPNITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus         8 ~~~~~~~~~~~~~~~gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      ++-.+-.-+.+-.+.+|+-+|++.|. +||+| |+|......  ..+.|+|..||+|.||+...
T Consensus        66 y~en~~~~~~~rk~~~hf~pC~~eyk-~YCiH-G~C~yI~dL--~epsCrC~~GYtG~RCE~vs  125 (126)
T PHA02887         66 YKENANAQNFKRKNSMFFEKCKNDFN-DFCIN-GECMNIIDL--DEKFCICNKGYTGIRCDEVS  125 (126)
T ss_pred             hhccccccchhhccccCccccChHhh-CEeeC-CEEEccccC--CCceeECCCCcccCCCCccc
Confidence            44445555667777899999999995 89997 599987643  37999999999999999763

>KOG1219|consensus

Probab=98.21  E-value=1.7e-06  Score=93.89  Aligned_cols=96  Identities=22%  Similarity=0.352  Sum_probs=65.3

Q ss_pred             CcCCCCCCceeeCCCCCCC-------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCCCCcccccch
Q psy12432         16 TPRPNITFHTYACPPTYAT-------------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQ   82 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~g-------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~~~~~p~~~~   82 (229)
                      |+.+...++.|+|+.||.|             |.|.|||.|.++.    +.|.|.|..||.|+.|...... .+..... 
T Consensus      3916 tCip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs~n~C~~gg~C~n~~----gsf~CncT~g~~gr~c~~~~pn-i~~~~~~- 3989 (4289)
T KOG1219|consen 3916 TCIPFYNGFLCNCPNGYTGKRCEARGISECSKNVCGTGGQCINIP----GSFHCNCTPGILGRTCCAEKPN-ILSTVLW- 3989 (4289)
T ss_pred             EEEecCCCeeEeCCCCccCceeecccccccccccccCCceeeccC----CceEeccChhHhcccCccccCc-cccccch-
Confidence            6677778899999999996             6899999999975    3699999999999999865432 1111111 


Q ss_pred             hhh-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12432         83 VML-ETASIASGASIAVFLVVILCFSLYVHCQRRKKQA  119 (229)
Q Consensus        83 ~~~-~~~~Ia~gI~V~lLLVlii~vvly~~~kRrk~~k  119 (229)
                      +++ |..+|++ +++++++++. ++|+|.++.++|+..
T Consensus      3990 ~gkaEli~I~V-~l~~ifilvv-lf~~crKk~~rkky~ 4025 (4289)
T KOG1219|consen 3990 LGKAELIIIIV-LLALIFILVV-LFWKCRKKNSRKKYG 4025 (4289)
T ss_pred             hcccceeehhH-HHHHHHHHHH-HHHhhhhhccCCccc
Confidence            122 3444444 4444444444 667788877666554

>KOG4289|consensus

Probab=97.87  E-value=1.5e-05  Score=84.15  Aligned_cols=53  Identities=28%  Similarity=0.654  Sum_probs=44.3

Q ss_pred             CCCceeeCCCCCCC------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCCCCcc
Q psy12432         21 ITFHTYACPPTYAT------------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYL   77 (229)
Q Consensus        21 ~~gy~C~C~~gy~g------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~~~~~   77 (229)
                      +.|..|+||+||.|            +||-|+|.|...+    ++|+|.|..||+|++||.....+..+
T Consensus      1219 vnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srE----ggYtCeCrpg~tGehCEvs~~agrCv 1283 (2531)
T KOG4289|consen 1219 VNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSRE----GGYTCECRPGFTGEHCEVSARAGRCV 1283 (2531)
T ss_pred             cCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEec----CceeEEecCCccccceeeecccCccc
Confidence            34899999999997            4899999999875    37999999999999999876544433

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.73  E-value=3e-05  Score=48.07  Aligned_cols=29  Identities=45%  Similarity=0.953  Sum_probs=25.3

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQR   66 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~r   66 (229)
                      +||.|||+|....   ...|.|.|+.||.|.+
T Consensus         4 ~~C~n~g~C~~~~---~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    4 NPCQNGGTCIDLP---GGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TSSTTTEEEEEES---TSEEEEEEBTTEESTT
T ss_pred             CcCCCCeEEEeCC---CCCEEeECCCCCccCC
Confidence            6999999999875   2379999999999975

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=96.76  E-value=0.0018  Score=40.10  Aligned_cols=30  Identities=47%  Similarity=1.022  Sum_probs=25.7

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCC-CCCCc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYM-GQRCE   68 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~-G~rCe   68 (229)
                      ++|.++|+|.+..    ..|.|.|+.||. |.+|+
T Consensus         9 ~~C~~~~~C~~~~----g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        9 NPCQNGGTCVNTV----GSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             CCcCCCCEeECCC----CCeEeECCCCCccCCcCC
Confidence            5899999999764    369999999999 98885

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=96.46  E-value=0.0037  Score=38.02  Aligned_cols=30  Identities=43%  Similarity=0.985  Sum_probs=25.4

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCE   68 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe   68 (229)
                      .+|.+++.|....    ..|.|.|..+|.|.+|+
T Consensus         9 ~~C~~~~~C~~~~----~~~~C~C~~g~~g~~C~   38 (38)
T cd00054           9 NPCQNGGTCVNTV----GSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             CCcCCCCEeECCC----CCeEeECCCCCcCCcCC
Confidence            5799999998763    36999999999998885

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG4289|consensus

Probab=96.22  E-value=0.0048  Score=66.13  Aligned_cols=52  Identities=29%  Similarity=0.577  Sum_probs=44.1

Q ss_pred             CcCCCCCCceeeCCCCCCC--------------CCCCCCCEEEeeccCCCCceEeecCCC-CCCCCCccc
Q psy12432         16 TPRPNITFHTYACPPTYAT--------------WYCLNGATCFTVKIGESLLYNCECADG-YMGQRCEFK   70 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~g--------------npClNGGtC~~~~~~~~~~~sC~C~~G-y~G~rCe~~   70 (229)
                      +++..-.||.|.|.+||.|              .+|.|||+|.+..   ..++-|.|+.| |.+.+|+..
T Consensus      1252 ~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~---nggf~c~Cp~ge~e~prC~v~ 1318 (2531)
T KOG4289|consen 1252 RCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLL---NGGFCCHCPYGEFEDPRCEVT 1318 (2531)
T ss_pred             ceEEecCceeEEecCCccccceeeecccCccccceecCCCEEeecC---CCceeccCCCcccCCCceEEE
Confidence            5666667899999999997              4899999999875   34799999997 999999975

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=96.14  E-value=0.008  Score=35.86  Aligned_cols=30  Identities=43%  Similarity=0.956  Sum_probs=25.4

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCC-CCc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQ-RCE   68 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~-rCe   68 (229)
                      ++|.+++.|....    ..|.|.|+.||.|. .|+
T Consensus         6 ~~C~~~~~C~~~~----~~~~C~C~~g~~g~~~C~   36 (36)
T cd00053           6 NPCSNGGTCVNTP----GSYRCVCPPGYTGDRSCE   36 (36)
T ss_pred             CCCCCCCEEecCC----CCeEeECCCCCcccCCcC
Confidence            6899999999764    36999999999998 774

>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species

Probab=96.01  E-value=0.018  Score=45.17  Aligned_cols=38  Identities=21%  Similarity=0.490  Sum_probs=28.0

Q ss_pred             CCCCCCCEEEeeccCC-CCceEeecCC-------------CCCCCCCcccCC
Q psy12432         35 WYCLNGATCFTVKIGE-SLLYNCECAD-------------GYMGQRCEFKDL   72 (229)
Q Consensus        35 npClNGGtC~~~~~~~-~~~~sC~C~~-------------Gy~G~rCe~~~~   72 (229)
                      |-|.+.|.|....... ..=|.|.|..             .|.|.-|+.++.
T Consensus        13 n~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~~~~~~ktt~W~G~aCqKkDv   64 (103)
T PF12955_consen   13 NNCSGHGSCVKKYGSGGGDCFACKCKPTVVKTGSGKGKTTHWGGPACQKKDV   64 (103)
T ss_pred             cCCCCCceEeeccCCCccceEEEEeeccccccccccCceeeecccccccccc
Confidence            6899999998763211 1249999988             488888998875

It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=95.78  E-value=0.014  Score=37.87  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=11.8

Q ss_pred             HHHHHhhhHHHHHHHHHHHHH
Q psy12432         86 ETASIASGASIAVFLVVILCF  106 (229)
Q Consensus        86 ~~~~Ia~gI~V~lLLVlii~v  106 (229)
                      ++.+|++|+.+++.+++|..+
T Consensus         4 s~IaIIv~V~vg~~iiii~~~   24 (38)
T PF02439_consen    4 STIAIIVAVVVGMAIIIICMF   24 (38)
T ss_pred             chhhHHHHHHHHHHHHHHHHH
Confidence            356667666666554444443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>smart00181 EGF Epidermal growth factor-like domain

Probab=95.19  E-value=0.035  Score=33.77  Aligned_cols=29  Identities=48%  Similarity=1.078  Sum_probs=23.9

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCC-CCCc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMG-QRCE   68 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G-~rCe   68 (229)
                      ++|.++ .|....    ..|.|.|..||.| ..|+
T Consensus         6 ~~C~~~-~C~~~~----~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        6 GPCSNG-TCINTP----GSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCCCC-EEECCC----CCeEeECCCCCccCCccC
Confidence            589998 998763    3799999999999 7774

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=95.17  E-value=0.0094  Score=43.98  Aligned_cols=12  Identities=33%  Similarity=0.382  Sum_probs=7.6

Q ss_pred             eeeccccCCCCC
Q psy12432        152 LTRITTEAPRAA  163 (229)
Q Consensus       152 ~~~~~~e~~~~~  163 (229)
                      +=+++||||-++
T Consensus        54 IDP~TYEDP~qA   65 (75)
T PF14575_consen   54 IDPHTYEDPNQA   65 (75)
T ss_dssp             --GGGSSSHHHH
T ss_pred             cCcccccCHHHH
Confidence            557889998543

...

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=94.78  E-value=0.036  Score=44.72  Aligned_cols=29  Identities=28%  Similarity=0.250  Sum_probs=13.5

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy12432         87 TASIASGASIAVFLVVILCFSLYVHCQRRKK  117 (229)
Q Consensus        87 ~~~Ia~gI~V~lLLVlii~vvly~~~kRrk~  117 (229)
                      +++|++|+..++++  ++++++|+.+++|||
T Consensus        66 i~~Ii~gv~aGvIg--~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   66 IIGIIFGVMAGVIG--IILLISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHHHHHHS--
T ss_pred             eeehhHHHHHHHHH--HHHHHHHHHHHHhcc
Confidence            45566666555533  333445554444444

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=94.69  E-value=0.049  Score=33.83  Aligned_cols=27  Identities=33%  Similarity=0.813  Sum_probs=23.2

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRC   67 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rC   67 (229)
                      ..|.+.|+|...      ...|.|..||.|..|
T Consensus         6 ~~C~~~G~C~~~------~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSP------CGRCVCDSGYTGPDC   32 (32)
T ss_pred             CccCCCCEEeCC------CCEEECCCCCcCCCC
Confidence            579999999853      379999999999887

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=94.49  E-value=0.017  Score=29.06  Aligned_cols=13  Identities=38%  Similarity=1.359  Sum_probs=10.0

Q ss_pred             EeecCCCCCCCCC
Q psy12432         55 NCECADGYMGQRC   67 (229)
Q Consensus        55 sC~C~~Gy~G~rC   67 (229)
                      .|.|+.||+|.+|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4888999998887

>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P

Probab=94.01  E-value=0.0097  Score=47.35  Aligned_cols=31  Identities=26%  Similarity=0.346  Sum_probs=2.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12432         91 ASGASIAVFLVVILCFSLYVHCQRRKKQAQA  121 (229)
Q Consensus        91 a~gI~V~lLLVlii~vvly~~~kRrk~~k~~  121 (229)
                      |+||+++++|+.|++++-||++|||..=|.+
T Consensus        26 AaGIGiL~VILgiLLliGCWYckRRSGYk~L   56 (118)
T PF14991_consen   26 AAGIGILIVILGILLLIGCWYCKRRSGYKTL   56 (118)
T ss_dssp             --SSS--------------------------
T ss_pred             hccceeHHHHHHHHHHHhheeeeecchhhhh
Confidence            6677777777777777777777777555544

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=93.98  E-value=0.052  Score=43.55  Aligned_cols=6  Identities=17%  Similarity=0.479  Sum_probs=3.1

Q ss_pred             ccCCCC
Q psy12432        171 ITGKGD  176 (229)
Q Consensus       171 ~~~~g~  176 (229)
                      ||..|.
T Consensus        78 Yd~~g~   83 (130)
T PF12273_consen   78 YDQQGN   83 (130)
T ss_pred             CCCCCC
Confidence            555543

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=93.43  E-value=0.022  Score=52.17  Aligned_cols=10  Identities=30%  Similarity=0.477  Sum_probs=0.0

Q ss_pred             CccCCCCcce
Q psy12432        141 FERRPSPADF  150 (229)
Q Consensus       141 ~~~~~~p~~~  150 (229)
                      |.+|.+|.-+
T Consensus       186 f~~KGiPvIF  195 (290)
T PF05454_consen  186 FISKGIPVIF  195 (290)
T ss_dssp             ----------
T ss_pred             HHhcCCceec
Confidence            6666666543

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=93.14  E-value=0.17  Score=41.31  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=17.7

Q ss_pred             CCCCCceeeCCCCCCCCCCCCC
Q psy12432         19 PNITFHTYACPPTYATWYCLNG   40 (229)
Q Consensus        19 ~~~~gy~C~C~~gy~gnpClNG   40 (229)
                      ++...+.|.|..||.|..|++.
T Consensus        62 ~dl~~~~CrC~~GYtGeRCEh~   83 (139)
T PHA03099         62 RDIDGMYCRCSHGYTGIRCQHV   83 (139)
T ss_pred             ccCCCceeECCCCcccccccce
Confidence            3455789999999999888764

>KOG1214|consensus

Probab=92.96  E-value=0.096  Score=54.07  Aligned_cols=46  Identities=28%  Similarity=0.680  Sum_probs=36.8

Q ss_pred             CCCceeeCCCCCCC-------------CCCCCCCEEEeeccCCCCceEeecCCCCCCC--CCccc
Q psy12432         21 ITFHTYACPPTYAT-------------WYCLNGATCFTVKIGESLLYNCECADGYMGQ--RCEFK   70 (229)
Q Consensus        21 ~~gy~C~C~~gy~g-------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~--rCe~~   70 (229)
                      ...|+|.|.+||+|             +.|.....|++..    +++.|+|..||.|.  +|...
T Consensus       806 gs~y~C~CLPGfsGDG~~c~dvDeC~psrChp~A~Cyntp----gsfsC~C~pGy~GDGf~CVP~  866 (1289)
T KOG1214|consen  806 GSTYSCACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTP----GSFSCRCQPGYYGDGFQCVPD  866 (1289)
T ss_pred             CceEEEeecCCccCCccccccccccCccccCCCceEecCC----CcceeecccCccCCCceecCC
Confidence            45589999999997             3677788999864    47999999999987  45544

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=92.61  E-value=0.26  Score=41.39  Aligned_cols=14  Identities=21%  Similarity=0.330  Sum_probs=7.3

Q ss_pred             HHHhhhHHHHHHHH
Q psy12432         88 ASIASGASIAVFLV  101 (229)
Q Consensus        88 ~~Ia~gI~V~lLLV  101 (229)
                      +.|++||+++|++|
T Consensus        78 ~~iivgvi~~Vi~I   91 (179)
T PF13908_consen   78 TGIIVGVICGVIAI   91 (179)
T ss_pred             eeeeeehhhHHHHH
Confidence            44566665544433

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=91.33  E-value=0.051  Score=39.11  Aligned_cols=19  Identities=16%  Similarity=0.585  Sum_probs=0.0

Q ss_pred             HHHhhhHHHHHHHHHHHHH
Q psy12432         88 ASIASGASIAVFLVVILCF  106 (229)
Q Consensus        88 ~~Ia~gI~V~lLLVlii~v  106 (229)
                      +++++|+++++++++++++
T Consensus        12 aavIaG~Vvgll~ailLIl   30 (64)
T PF01034_consen   12 AAVIAGGVVGLLFAILLIL   30 (64)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555555566554444443

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=89.96  E-value=0.37  Score=31.10  Aligned_cols=31  Identities=29%  Similarity=0.743  Sum_probs=24.4

Q ss_pred             eCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCC
Q psy12432         27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYM   63 (229)
Q Consensus        27 ~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~   63 (229)
                      .|..+-  +.|.+++.|.+..    ++|.|.|+.||.
T Consensus         4 EC~~~~--~~C~~~~~C~N~~----Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    4 ECAEGP--HNCPENGTCVNTE----GSYSCSCPPGYE   34 (42)
T ss_dssp             TTTTTS--SSSSTTSEEEEET----TEEEEEESTTEE
T ss_pred             ccCCCC--CcCCCCCEEEcCC----CCEEeeCCCCcE
Confidence            355532  6898899999985    379999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=89.21  E-value=0.5  Score=36.16  Aligned_cols=15  Identities=7%  Similarity=0.498  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHH
Q psy12432         96 IAVFLVVILCFSLYV  110 (229)
Q Consensus        96 V~lLLVlii~vvly~  110 (229)
                      .++|+++++++++||
T Consensus        41 ~~iFil~VilwfvCC   55 (94)
T PF05393_consen   41 CGIFILLVILWFVCC   55 (94)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344455555554444

; GO: 0016021 integral to membrane

>PF15069 FAM163: FAM163 family

Probab=89.03  E-value=1.4  Score=36.52  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=14.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHH
Q psy12432         88 ASIASGASIAVFLVVILCFSLYVH  111 (229)
Q Consensus        88 ~~Ia~gI~V~lLLVlii~vvly~~  111 (229)
                      ++|.+||...|+||.||+++.||+
T Consensus         6 vVItGgILAtVILLcIIaVLCYCR   29 (143)
T PF15069_consen    6 VVITGGILATVILLCIIAVLCYCR   29 (143)
T ss_pred             EEEechHHHHHHHHHHHHHHHHHh
Confidence            445566655565666666666655

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=88.76  E-value=0.025  Score=47.20  Aligned_cols=26  Identities=27%  Similarity=0.498  Sum_probs=11.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12432         91 ASGASIAVFLVVILCFSLYVHCQRRKKQ  118 (229)
Q Consensus        91 a~gI~V~lLLVlii~vvly~~~kRrk~~  118 (229)
                      ++||++++||  ++++++|+++.|+|+.
T Consensus        55 VVGVGg~ill--~il~lvf~~c~r~kkt   80 (154)
T PF04478_consen   55 VVGVGGPILL--GILALVFIFCIRRKKT   80 (154)
T ss_pred             EecccHHHHH--HHHHhheeEEEecccC
Confidence            4444444443  3333444444444443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=88.70  E-value=0.42  Score=36.93  Aligned_cols=32  Identities=13%  Similarity=0.364  Sum_probs=13.8

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy12432         87 TASIASGASIAVFLVVILCFSLYVHCQRRKKQA  119 (229)
Q Consensus        87 ~~~Ia~gI~V~lLLVlii~vvly~~~kRrk~~k  119 (229)
                      |-+++.|..++| +|+|+++++||+.|+|..++
T Consensus        42 WpyLA~GGG~iL-ilIii~Lv~CC~~K~K~~~~   73 (98)
T PF07204_consen   42 WPYLAAGGGLIL-ILIIIALVCCCRAKHKTSAA   73 (98)
T ss_pred             hHHhhccchhhh-HHHHHHHHHHhhhhhhhHhh
Confidence            445555543333 33334444444444443443

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>KOG2052|consensus

Probab=88.46  E-value=1.3  Score=43.30  Aligned_cols=32  Identities=16%  Similarity=0.438  Sum_probs=20.9

Q ss_pred             CcCCCCCCceeeCCCCCCC--CCCCCCCEEEeec
Q psy12432         16 TPRPNITFHTYACPPTYAT--WYCLNGATCFTVK   47 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~g--npClNGGtC~~~~   47 (229)
                      ...++..-+.|.|......  +-|.+||.|+...
T Consensus        27 ~~~~~~~~~~C~C~~~~~~n~~tC~t~g~C~~s~   60 (513)
T KOG2052|consen   27 SVPPGVQLLKCYCSSCLCSNANTCETDGACFVSV   60 (513)
T ss_pred             CCCCCceeEEEEecCCCcCCCCeeeecCeEEEEE
Confidence            3344444688888765443  4688899998653

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=88.40  E-value=0.35  Score=28.28  Aligned_cols=21  Identities=33%  Similarity=0.649  Sum_probs=12.8

Q ss_pred             CceeeCCCCCCCCCCCCCCEEEe
Q psy12432         23 FHTYACPPTYATWYCLNGATCFT   45 (229)
Q Consensus        23 gy~C~C~~gy~gnpClNGGtC~~   45 (229)
                      +|.|.|++||..++  +|-.|..
T Consensus         1 sy~C~C~~Gy~l~~--d~~~C~D   21 (24)
T PF12662_consen    1 SYTCSCPPGYQLSP--DGRSCED   21 (24)
T ss_pred             CEEeeCCCCCcCCC--CCCcccc
Confidence            47788888875332  4555554

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=87.40  E-value=1.4  Score=38.93  Aligned_cols=10  Identities=30%  Similarity=0.604  Sum_probs=7.1

Q ss_pred             ccccCCCCCC
Q psy12432        183 LYHQSSPPLP  192 (229)
Q Consensus       183 ~f~~~~~~~~  192 (229)
                      +|.+.+|...
T Consensus       146 ~~~P~sPDLa  155 (221)
T PF08374_consen  146 TFKPDSPDLA  155 (221)
T ss_pred             CCCCCCcchh
Confidence            7777777654

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>KOG3516|consensus

Probab=87.02  E-value=0.42  Score=50.96  Aligned_cols=40  Identities=28%  Similarity=0.660  Sum_probs=33.0

Q ss_pred             CceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecC-CCCCCCCCccc
Q psy12432         23 FHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECA-DGYMGQRCEFK   70 (229)
Q Consensus        23 gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~-~Gy~G~rCe~~   70 (229)
                      +..|+|.+    |+|.|||.|.-.  ++  .+.|.|. .||.|..|...
T Consensus       543 ~i~drClP----N~CehgG~C~Qs--~~--~f~C~C~~TGY~GatCHts  583 (1306)
T KOG3516|consen  543 GISDRCLP----NPCEHGGKCSQS--WD--DFECNCELTGYKGATCHTS  583 (1306)
T ss_pred             ccccccCC----ccccCCCccccc--cc--ceeEeccccccccccccCC
Confidence            35789988    899999999873  22  6999999 79999988754

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=86.22  E-value=0.44  Score=47.98  Aligned_cols=29  Identities=28%  Similarity=0.508  Sum_probs=18.0

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12432         90 IASGASIAVFLVVILCFSLYVHCQRRKKQ  118 (229)
Q Consensus        90 Ia~gI~V~lLLVlii~vvly~~~kRrk~~  118 (229)
                      |++|+++.|+||++|++++||+.-|++|.
T Consensus       271 II~gVlvPv~vV~~Iiiil~~~LCRk~K~  299 (684)
T PF12877_consen  271 IIAGVLVPVLVVLLIIIILYWKLCRKNKL  299 (684)
T ss_pred             EEehHhHHHHHHHHHHHHHHHHHhccccc
Confidence            34456677777777777777665555443

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>KOG3514|consensus

Probab=86.20  E-value=0.41  Score=50.73  Aligned_cols=34  Identities=29%  Similarity=0.700  Sum_probs=28.7

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCC-CCCCCCCcccC
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECAD-GYMGQRCEFKD   71 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~-Gy~G~rCe~~~   71 (229)
                      +|||+|||.|...  .  +.+.|.|.. +|.|..||...
T Consensus       628 ~nPC~N~g~C~eg--w--NrfiCDCs~T~~~G~~CerE~  662 (1591)
T KOG3514|consen  628 SNPCQNGGKCSEG--W--NRFICDCSGTGFEGRTCEREA  662 (1591)
T ss_pred             CCcccCCCCcccc--c--cccccccccCcccCcccccee
Confidence            4899999999874  3  389999987 79999999753

>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells []

Probab=85.42  E-value=0.97  Score=34.03  Aligned_cols=26  Identities=15%  Similarity=0.466  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy12432         95 SIAVFLVVILCFSLYVHCQRRKKQAQ  120 (229)
Q Consensus        95 ~V~lLLVlii~vvly~~~kRrk~~k~  120 (229)
                      +|++++.+++..++|..++|.|++++
T Consensus        13 iv~~iiaIvvW~iv~ieYrk~~rqrk   38 (81)
T PF00558_consen   13 IVALIIAIVVWTIVYIEYRKIKRQRK   38 (81)
T ss_dssp             HHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333344555665555554

; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.

>KOG3607|consensus

Probab=84.81  E-value=1.4  Score=45.26  Aligned_cols=29  Identities=24%  Similarity=0.587  Sum_probs=23.3

Q ss_pred             CCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCC
Q psy12432         37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL   72 (229)
Q Consensus        37 ClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~   72 (229)
                      |...|+|.+       ...|.|..||.+..|+....
T Consensus       632 C~g~GVCnn-------~~~ChC~~gwapp~C~~~~~  660 (716)
T KOG3607|consen  632 CNGHGVCNN-------ELNCHCEPGWAPPFCFIFGY  660 (716)
T ss_pred             cCCCcccCC-------CcceeeCCCCCCCccccccC
Confidence            666677754       58999999999999998754

>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT

Probab=84.74  E-value=1.1  Score=35.21  Aligned_cols=7  Identities=14%  Similarity=-0.078  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q psy12432        107 SLYVHCQ  113 (229)
Q Consensus       107 vly~~~k  113 (229)
                      ++.|+.+
T Consensus        19 l~~wr~~   25 (107)
T PF15330_consen   19 LLAWRMK   25 (107)
T ss_pred             HHHHHHH
Confidence            3334333

>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ)

Probab=84.17  E-value=2.6  Score=28.14  Aligned_cols=22  Identities=14%  Similarity=0.345  Sum_probs=10.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q psy12432         93 GASIAVFLVVILCFSLYVHCQR  114 (229)
Q Consensus        93 gI~V~lLLVlii~vvly~~~kR  114 (229)
                      ++..++++++++.+++|.+++|
T Consensus        12 ~~~~v~~~~~F~gi~~w~~~~~   33 (49)
T PF05545_consen   12 SIGTVLFFVFFIGIVIWAYRPR   33 (49)
T ss_pred             HHHHHHHHHHHHHHHHHHHccc
Confidence            3344444444444445444443

FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].

>KOG1225|consensus

Probab=83.29  E-value=1.3  Score=43.91  Aligned_cols=38  Identities=29%  Similarity=0.763  Sum_probs=22.1

Q ss_pred             eeeCCCCCCCC---------CCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         25 TYACPPTYATW---------YCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        25 ~C~C~~gy~gn---------pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      .|.|++||.|.         .|.+.|-|..        -.|.|..||.|.-|+..
T Consensus       297 ~CiC~~g~~G~dCs~~~cpadC~g~G~Ci~--------G~C~C~~Gy~G~~C~~~  343 (525)
T KOG1225|consen  297 ECICNPGYSGKDCSIRRCPADCSGHGKCID--------GECLCDEGYTGELCIQR  343 (525)
T ss_pred             EeecCCCccccccccccCCccCCCCCcccC--------CceEeCCCCcCCccccc
Confidence            56666666552         3455555541        35666666666666664

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=82.90  E-value=0.11  Score=34.05  Aligned_cols=18  Identities=28%  Similarity=0.486  Sum_probs=7.7

Q ss_pred             HHHhhhHHHHHHHHHHHH
Q psy12432         88 ASIASGASIAVFLVVILC  105 (229)
Q Consensus        88 ~~Ia~gI~V~lLLVlii~  105 (229)
                      +.|+.|+.+-+.++++++
T Consensus        11 vaIa~~VvVPV~vI~~vl   28 (40)
T PF08693_consen   11 VAIAVGVVVPVGVIIIVL   28 (40)
T ss_pred             EEEEEEEEechHHHHHHH
Confidence            344444444444333333

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG1225|consensus

Probab=81.90  E-value=1.8  Score=42.77  Aligned_cols=14  Identities=43%  Similarity=1.253  Sum_probs=9.7

Q ss_pred             EeecCCCCCCCCCc
Q psy12432         55 NCECADGYMGQRCE   68 (229)
Q Consensus        55 sC~C~~Gy~G~rCe   68 (229)
                      .|.|..+|.|..|+
T Consensus       297 ~CiC~~g~~G~dCs  310 (525)
T KOG1225|consen  297 ECICNPGYSGKDCS  310 (525)
T ss_pred             EeecCCCccccccc
Confidence            67777777777664

>KOG1217|consensus

Probab=80.73  E-value=2.4  Score=38.80  Aligned_cols=42  Identities=38%  Similarity=0.818  Sum_probs=33.2

Q ss_pred             CCceeeCCCCCCCC---------------CCCCCCEEEeeccCCCCceEeecCCCCCCCCC
Q psy12432         22 TFHTYACPPTYATW---------------YCLNGATCFTVKIGESLLYNCECADGYMGQRC   67 (229)
Q Consensus        22 ~gy~C~C~~gy~gn---------------pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rC   67 (229)
                      .+|.|.|++||.+.               +|.|+++|....    ..|.|.|+.+|.|..|
T Consensus       250 ~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~----~~~~C~C~~g~~g~~~  306 (487)
T KOG1217|consen  250 GSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVP----GSYRCTCPPGFTGRLC  306 (487)
T ss_pred             CceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCC----CcceeeCCCCCCCCCC
Confidence            34778888777643               388899999864    2499999999999998

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=80.43  E-value=0.79  Score=41.77  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=13.1

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12432         87 TASIASGASIAVFLVVILCFSLYVHCQRRK  116 (229)
Q Consensus        87 ~~~Ia~gI~V~lLLVlii~vvly~~~kRrk  116 (229)
                      ++-||+|++|++|||++  ++.|+..+||.
T Consensus       272 ~vPIaVG~~La~lvliv--LiaYli~Rrr~  299 (306)
T PF01299_consen  272 LVPIAVGAALAGLVLIV--LIAYLIGRRRS  299 (306)
T ss_pred             hHHHHHHHHHHHHHHHH--HHhheeEeccc
Confidence            45556665554443333  33444444433

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
3ltf_D	58	Crystal Structure Of The Drosophila Epidermal Growt		1e-16
3c9a_C	52	High Resolution Crystal Structure Of Argos Bound To		2e-14
1egf_A	53	Solution Structure Of Murine Epidermal Growth Facto		5e-04
1gk5_A	49	Solution Structure The MegfTGFALPHA44-50 Chimeric G		8e-04

>pdb|3LTF|D Chain D, Crystal Structure Of The Drosophila Epidermal Growth Factor Receptor Ectodomain In Complex With Spitz Length = 58

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLP 78
          TF TY CP T+  WYCLN A CF VKI +  +Y+CECA G+MGQRCE+K++D +YLP
Sbjct: 1  TFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLP 57

>pdb|3C9A|C Chain C, High Resolution Crystal Structure Of Argos Bound To The Egf Domain Of Spitz Length = 52

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
          TF TY CP T+  WYCLN A CF VKI +  +Y+CECA G+MGQRCE+K++D
Sbjct: 1  TFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEID 52

>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor Determined By Nmr Spectroscopy And Refined By Energy Minimization With Restraints Length = 53

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
           CP +Y   YCLNG  C  ++  +S  Y C C  GY G RC+ +DL
Sbjct: 5  GCPSSYDG-YCLNGGVCMHIESLDS--YTCNCVIGYSGDRCQTRDL 47

>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth Factor Length = 49

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
           CP +Y   YCLNG  C  ++  +S  Y C C  GY G RCE  DL
Sbjct: 5  GCPSSYDG-YCLNGGVCMHIESLDS--YTCNCVIGYSGDRCEHADL 47

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	1e-27
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	1e-25
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	4e-13
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	4e-13
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	9e-08
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	2e-07
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	3e-07
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	4e-06
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	1e-05
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	6e-05
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	7e-05
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	9e-05
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-04
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	7e-05
2vh0_B	134	Activated factor XA light chain; serine protease,	9e-05
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-04
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-04
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	4e-04
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-04
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	5e-04
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	8e-04

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} Length = 58

 Score = 99.2 bits (247), Expect = 1e-27
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLP 78
          TF TY CP T+  WYCLN A CF VKI +  +Y+CECA G+MGQRCE+K++D +YLP
Sbjct: 1  TFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLP 57

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D Length = 52

 Score = 93.4 bits (232), Expect = 1e-25
 Identities = 32/52 (61%), Positives = 40/52 (76%)

Query: 22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
          TF TY CP T+  WYCLN A CF VKI +  +Y+CECA G+MGQRCE+K++D
Sbjct: 1  TFPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEID 52

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* Length = 53

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDG 74
          CP ++   YCL+   C  ++  +   Y C C  GY+G+RC+++DL  
Sbjct: 6  CPLSHD-GYCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRDLKW 49

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDG 74
          CP +Y   YCLNG  C  ++  +S  Y C C  GY G RC+ +DL  
Sbjct: 6  CPSSYD-GYCLNGGVCMHIESLDS--YTCNCVIGYSGDRCQTRDLRW 49

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A Length = 50

 Score = 46.3 bits (110), Expect = 9e-08
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
          H   CP ++   +C +G   F V+  +     C C  GY+G RCE  DL
Sbjct: 4  HFNDCPDSHTQ-FCFHGTCRFLVQEDK---PACVCHSGYVGARCEHADL 48

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A Length = 63

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESL-LYNCECADGYMGQRCEFKDLDGSY 76
          H   C     T +C+NG  CF VK   +   Y C+C  G+ G RC         
Sbjct: 2  HLVKCAEKEKT-FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQ 54

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A Length = 50

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
          H   CP  Y   YC+ G   F V        +C C +GY+G RCE  DL
Sbjct: 4  HFSRCPKQYKH-YCIKGRCRFVVAEQT---PSCVCDEGYIGARCERVDL 48

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 Length = 45

 Score = 42.0 bits (98), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 29 PPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
          P +Y   YCLNG     ++  +S  Y C C  GY G RC+ +DL
Sbjct: 4  PSSYDG-YCLNGGVXMHIESLDS--YTCNCVIGYSGDRCQTRDL 44

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A Length = 46

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
          C       YCL+G   + V + +     C C  GY G RCE   L
Sbjct: 6  CSSDMNG-YCLHGQCIYLVDMSQ---NYCRCEVGYTGVRCEHFFL 46

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 33 ATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          +   C NG TC          + C+C +G+ G+ CE
Sbjct: 52 SEPRCFNGGTCQQALYFSD--FVCQCPEGFAGKSCE 85

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 37 CLNGATCFTVKIGESLL---YNCECADGYMGQRCE 68
          C NG TC   +         Y C+C  G+ G  C+
Sbjct: 60 CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLPSRKQVMLETAS 89
          C NG  C       S  ++CEC DG+    C    ++ +              
Sbjct: 8  CENGGICLPGLADGS--FSCECPDGFTDPNCS-SVVEVASDEEEPTSAGPCTP 57

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)

Query: 37  CLNGATCFTVKIGESLLYNCECADGYMGQRCEFK 70
           C NG  C T  +     Y+CEC   +MG+ C++K
Sbjct: 105 CKNGGIC-TDLVAN---YSCECPGEFMGRNCQYK 134

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 38.2 bits (90), Expect = 7e-05
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
          CLNG +C    I     Y C C  G+ G+ CE 
Sbjct: 11 CLNGGSC-KDDINS---YECWCPFGFEGKNCEL 39

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 16/53 (30%)

Query: 28 CPPTYATWY------------CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
             T   W             C N   C    +GE   Y C C +G+ G+ CE
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQGKC-KDGLGE---YTCTCLEGFEGKNCE 77

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 37  CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
           CLNG TC      +   Y C C +GY G  CE
Sbjct: 140 CLNGGTCSNTGPDK---YQCSCPEGYSGPNCE 168

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          C N ATC   +IGE   + C C  GY G  CE
Sbjct: 53 CQNDATC-LDQIGE---FQCICMPGYEGVHCE 80

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          C +   C    +G    + C+C  GY G RCE
Sbjct: 15 CEHAGKC-INTLGS---FECQCLQGYTGPRCE 42

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 37  CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
           CL+   C   KI E   + CEC  G+ G  C+
Sbjct: 91  CLHNGRC-LDKINE---FQCECPTGFTGHLCQ 118

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 16/53 (30%)

Query: 28 CPPTYATWY------------CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
             T   W             C N   C    +GE   Y C C +G+ G+ CE
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQNQGKC-KDGLGE---YTCTCLEGFEGKNCE 77

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 Length = 79

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          C   Y   +C++G   +  ++      +C C  GY G+RC 
Sbjct: 40 CLRKYKD-FCIHGECKYVKELRA---PSCICHPGYHGERCH 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	98.91
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.91
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	98.75
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	98.74
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.67
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	98.59
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.47
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.46
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.34
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.34
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	98.13
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.06
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.04
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	97.98
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.74
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.62
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	97.42
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	97.32
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	97.24
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	97.13
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.93
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	96.8
2bou_A	143	EGF-like module containing mucin-like hormone rece	96.75
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	96.74
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	96.69
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.66
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	96.59
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	96.51
1aut_L	114	Activated protein C; serine proteinase, plasma cal	96.48
2bou_A	143	EGF-like module containing mucin-like hormone rece	96.35
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	96.31
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.27
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	96.26
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	96.18
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	96.16
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	96.07
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	95.91
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	95.78
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	95.76
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	95.74
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.71
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	95.64
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	95.59
2vh0_B	134	Activated factor XA light chain; serine protease,	95.54
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	95.51
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	95.47
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	95.46
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	95.41
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	95.3
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	95.23
1aut_L	114	Activated protein C; serine proteinase, plasma cal	95.16
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	95.15
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	95.12
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	95.11
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	95.09
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	95.07
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	95.05
2vh0_B	134	Activated factor XA light chain; serine protease,	94.92
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	94.88
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	94.75
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	94.31
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	94.23
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	94.16
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	93.99
3v65_B	386	Low-density lipoprotein receptor-related protein;	93.03
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	92.79
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	92.5
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	91.96
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	91.39
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	91.36
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	91.31
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	91.26
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	90.97
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	90.84
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	90.8
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	90.4
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	90.27
2k9j_B	43	Integrin beta-3; transmembrane complex, cell adhes	90.16
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	90.09
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	89.5
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	89.42
1iij_A	35	ERBB-2 receptor protein-tyrosine kinase; alpha-hel	89.39
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	88.97
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	88.65
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	88.15
2k1a_A	42	Integrin alpha-IIB; single-PASS transmembrane segm	87.96
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.82
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	87.35
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	86.84
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	86.28
1pi7_A	36	VPU protein, U ORF protein; alpha helix, viral pro	86.01
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	85.67
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	84.8
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	84.51
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	84.49
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	84.19
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	83.55
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	82.94
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	81.5
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	81.11
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	80.98

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=98.91  E-value=1.7e-10  Score=80.06  Aligned_cols=56  Identities=61%  Similarity=1.396  Sum_probs=44.5

Q ss_pred             CceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCCCCccc
Q psy12432         23 FHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGSYLP   78 (229)
Q Consensus        23 gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~~~~~p   78 (229)
                      ++.-.|++.|+++||+|||+|..........+.|.|+.||+|.+||.....+.|+|
T Consensus         2 ~~~~~C~~~~~~~pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~~~~~~y~~   57 (58)
T 3ltf_D            2 FPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKEIDNTYLP   57 (58)
T ss_dssp             CCCBCCCHHHHHHTSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEECCCCCSCC
T ss_pred             cccccCCccccCCcCCCCCEEeCCccCCCCCEEeECCCCCccCCCcccCCCCcCcc
Confidence            56778999887669999999985320012369999999999999999988777765

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.91  E-value=1.6e-10  Score=78.12  Aligned_cols=49  Identities=61%  Similarity=1.400  Sum_probs=39.7

Q ss_pred             CceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         23 FHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        23 gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      .+.|.|++||..+||+|||+|..........|.|.|+.||+|.+||...
T Consensus         2 ~~~C~C~~g~~~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~~   50 (52)
T 3ca7_A            2 FPTYKCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYKE   50 (52)
T ss_dssp             CCCBCCCHHHHHHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEEC
T ss_pred             CeeeECCCCCcCCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcccc
Confidence            4689999999878999999999742101236999999999999999865

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=98.75  E-value=5.2e-09  Score=70.72  Aligned_cols=47  Identities=38%  Similarity=0.786  Sum_probs=39.8

Q ss_pred             CCceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCC
Q psy12432         22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL   72 (229)
Q Consensus        22 ~gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~   72 (229)
                      .+|.-+|++.| .+||+|| +|..+...  +.++|+|..||+|+|||..++
T Consensus         2 ~~h~~~C~~~~-~~yC~nG-~C~~~~~~--~~~~C~C~~gy~G~RCe~~dL   48 (50)
T 3e50_C            2 VSHFNDCPDSH-TQFCFHG-TCRFLVQE--DKPACVCHSGYVGARCEHADL   48 (50)
T ss_pred             CccccccChhh-cCcccCC-EEeeccCC--CCeEEECCCCCcccCCCceee
Confidence            47889999999 4899998 99986433  379999999999999998753

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=98.74  E-value=6.2e-09  Score=70.22  Aligned_cols=49  Identities=37%  Similarity=0.749  Sum_probs=40.7

Q ss_pred             CCCceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCC
Q psy12432         21 ITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD   73 (229)
Q Consensus        21 ~~gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~   73 (229)
                      |++|+-+|++.|. ++|+| |+|..+..  ...++|+|+.||+|+|||..+++
T Consensus         1 ~~~h~~~C~~~~~-~yC~n-G~C~~~~~--~~~~~C~C~~gy~G~RCe~~~l~   49 (50)
T 1iox_A            1 RKGHFSRCPKQYK-HYCIK-GRCRFVVA--EQTPSCVCDEGYIGARCERVDLF   49 (50)
T ss_dssp             CCCCCEECCGGGT-TSCTT-CCEEEETT--TTEEEECCCTTEETTTTCEECCC
T ss_pred             CCCcccccChhhc-CcccC-CEEEeEcC--CCCeEEECCCCcccCCCCeecCC
Confidence            4578999999996 99999 69976543  23799999999999999998653

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.67  E-value=1.8e-08  Score=68.49  Aligned_cols=49  Identities=33%  Similarity=0.836  Sum_probs=38.8

Q ss_pred             ceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCCCC
Q psy12432         24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDGS   75 (229)
Q Consensus        24 y~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~~~   75 (229)
                      |.-.|++.+ .+||+|||+|.....  ...|.|.|+.||+|.+||....+++
T Consensus         2 ~~~~C~~~~-~~pC~nGG~C~~~~~--~~~~~C~C~~GytG~~Ce~~~~~~~   50 (53)
T 1nql_B            2 SDSECPLSH-DGYCLHDGVCMYIEA--LDKYACNCVVGYIGERCQYRDLKWW   50 (53)
T ss_dssp             -CEECCSTT-CCEECTTCEEEEETT--TTEEEEEECTTEESTTSCEECSSCC
T ss_pred             CccccCCCC-CCCCCCCeEEeeecC--CCCEEEecCCCCcCCCCCcCCcccc
Confidence            456888887 489999999985432  2379999999999999999876543

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=98.59  E-value=5.4e-08  Score=65.66  Aligned_cols=46  Identities=22%  Similarity=0.626  Sum_probs=38.5

Q ss_pred             CCCCceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         20 NITFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        20 ~~~gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      .+.+|.-.|++.|. +||+|| +|+.+...  ..+.|+|+.||+|+|||.
T Consensus         4 ~~~~~~~~C~~~~~-~yC~nG-~C~~i~~~--~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A            4 GSSGKKNPCNAEFQ-NFCIHG-ECKYIEHL--EAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             CCCSCCCTTTTTGG-GTCSSS-EEEEETTT--TEEEEECCSSCCSSSCCC
T ss_pred             CcCCcCcccCchhh-CcCCCC-EEEEecCC--CCeeEECCCCcccccccc
Confidence            45688899999885 899996 99976533  379999999999999996

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.47  E-value=2.2e-07  Score=63.71  Aligned_cols=49  Identities=31%  Similarity=0.737  Sum_probs=36.4

Q ss_pred             CceeeCCCCCCCCCCCCCCEEEeecc-CCCCceEeecCCCCCCCCCcccCC
Q psy12432         23 FHTYACPPTYATWYCLNGATCFTVKI-GESLLYNCECADGYMGQRCEFKDL   72 (229)
Q Consensus        23 gy~C~C~~gy~gnpClNGGtC~~~~~-~~~~~~sC~C~~Gy~G~rCe~~~~   72 (229)
                      .+.-.|.+-. .+||+|||+|+.... ...+.|.|.|+.||+|.+||....
T Consensus         3 ~c~~~~~eC~-s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G            3 SHLVKCAEKE-KTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             CCEEECCSTT-TTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEECC
T ss_pred             CCcccCCCCc-CCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccCc
Confidence            3455666655 489999999976421 113479999999999999998764

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.46  E-value=2e-07  Score=61.46  Aligned_cols=42  Identities=31%  Similarity=0.642  Sum_probs=33.8

Q ss_pred             eeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         26 YACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        26 C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      -.|...|. +||+| |+|.....  .+.|.|.|+.||+|.+||..+
T Consensus         4 ~~C~~~~~-~pC~n-G~C~~~~~--~~~~~C~C~~GytG~~Ce~~~   45 (46)
T 1k36_A            4 TKCSSDMN-GYCLH-GQCIYLVD--MSQNYCRCEVGYTGVRCEHFF   45 (46)
T ss_dssp             ECCCTTCC-SSCSS-EEEEEETT--TTEEEEEECTTCSSTTSCCCC
T ss_pred             ccCCCCCC-CCCCC-CEeeccCC--CCCEEEECCCCCccCCCCccc
Confidence            45777774 89999 79987642  237999999999999999764

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.34  E-value=5.3e-07  Score=58.71  Aligned_cols=42  Identities=38%  Similarity=0.912  Sum_probs=32.4

Q ss_pred             eCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        27 ~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      .|.+.|. +||+|||+|..+..  ...|.|.|+.||+|.+|+...
T Consensus         2 ~C~~~~~-~pC~ngg~C~~~~~--~~~~~C~C~~G~~G~~Ce~~~   43 (45)
T 1a3p_A            2 GXPSSYD-GYCLNGGVXMHIES--LDSYTCNCVIGYSGDRCQTRD   43 (45)
T ss_dssp             CCTTCCS-SCCSSSCEEEECTT--TSSEEEECCTTEETTTTCEEC
T ss_pred             CcccCCC-CCCCCCCEEEeecC--CCCEEEEcCCCCcCCcCCccc
Confidence            3665553 69999999985321  237999999999999999764

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.34  E-value=9e-07  Score=59.60  Aligned_cols=46  Identities=41%  Similarity=0.993  Sum_probs=35.5

Q ss_pred             eeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCC
Q psy12432         25 TYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD   73 (229)
Q Consensus        25 ~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~   73 (229)
                      +-.|...|. +||+|||+|.....  ...|.|.|+.||+|.+|+.....
T Consensus         3 i~~C~~~~~-~pC~ngg~C~~~~~--~~~~~C~C~~G~~G~~Ce~~~~~   48 (53)
T 1egf_A            3 YPGCPSSYD-GYCLNGGVCMHIES--LDSYTCNCVIGYSGDRCQTRDLR   48 (53)
T ss_dssp             ECCCCTTSS-CSSCSSCEEEEESS--SSCEEEECCTTCCSSSSCCCSCC
T ss_pred             cccCCCCCC-CcCCCCcEEEeeCC--CCCEEEECCCCCcCCcCCccCcc
Confidence            345776653 79999999995321  23799999999999999987654

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=98.13  E-value=7.6e-07  Score=65.47  Aligned_cols=43  Identities=33%  Similarity=0.661  Sum_probs=33.5

Q ss_pred             ceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        24 y~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +.-.|.+.|. +||+|| +|+.+...  ..+.|.|..||+|.|||..
T Consensus        36 ~~~pC~~~~~-~yClnG-~C~~i~~~--~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           36 KRDPCLRKYK-DFCIHG-ECKYVKEL--RAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             ---CTTTTTT-TCCSSE-EECCBGGG--TBCCEEECTTEESTTCCEE
T ss_pred             cCCCCCcccc-CcCCCC-EeeeecCC--CCeEEEcCCCccccccccc
Confidence            6789999985 899997 99765422  3689999999999999864

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.06  E-value=1.8e-06  Score=59.91  Aligned_cols=49  Identities=33%  Similarity=0.690  Sum_probs=35.3

Q ss_pred             ceeeCCCCCCCCCCCCCCEEEeeccC-CCCceEeecCCCCCCCCCcccCCC
Q psy12432         24 HTYACPPTYATWYCLNGATCFTVKIG-ESLLYNCECADGYMGQRCEFKDLD   73 (229)
Q Consensus        24 y~C~C~~gy~gnpClNGGtC~~~~~~-~~~~~sC~C~~Gy~G~rCe~~~~~   73 (229)
                      |.-+|.+-. .+||+|||+|..+... ....|.|.|+.||+|.+|+.....
T Consensus         2 h~~~c~~C~-~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~   51 (63)
T 1hae_A            2 HLVKCAEKE-KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM   51 (63)
T ss_dssp             EEEECCHHH-HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCS
T ss_pred             CcCccCCCC-CCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCc
Confidence            455565543 4899999999974200 023699999999999999976543

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.04  E-value=8.3e-06  Score=60.40  Aligned_cols=49  Identities=27%  Similarity=0.581  Sum_probs=39.8

Q ss_pred             CCCceeeCCCCCC-----------CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         21 ITFHTYACPPTYA-----------TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        21 ~~gy~C~C~~gy~-----------gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      ..+|.|.|++||.           .+||.|||+|.....  ...|.|.|+.||.|.+|+...
T Consensus        29 ~~~y~C~C~~G~~~C~~~~~~~C~~~pC~ngg~C~~~~~--~~~~~C~C~~G~~G~~Ce~~i   88 (91)
T 1tpg_A           29 NRVEYCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQALY--FSDFVCQCPEGFAGKSCEIDT   88 (91)
T ss_dssp             SCEEEEECSSSCCBCCEECEEECSSCCSCTTCEEEEESS--SSCEEEECCTTCBSSSCCBCS
T ss_pred             CCCcEeECCCCCcccccCcCCcccCCCCCCCCEeecCCC--CCCeEeECCCCCcCCcCCcCC
Confidence            4568999999994           258999999998631  137999999999999999654

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=97.98  E-value=6.9e-06  Score=51.38  Aligned_cols=31  Identities=39%  Similarity=0.835  Sum_probs=27.4

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      +||.|||+|.+..    ..|.|.|+.||+|.+|+.
T Consensus         9 ~pC~ngg~C~~~~----~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B            9 NPCLNGGSCKDDI----NSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCCTTCEEEEET----TEEEEECCTTCCSTTSCC
T ss_pred             CCCCCCCEeEcCC----CceEeECCCCCcCCccCC
Confidence            7999999999763    379999999999999973

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.74  E-value=2.9e-05  Score=60.75  Aligned_cols=46  Identities=30%  Similarity=0.751  Sum_probs=39.0

Q ss_pred             CCceeeCCCCCCC------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         22 TFHTYACPPTYAT------------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        22 ~gy~C~C~~gy~g------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      .+|.|.|++||.|            ++|.|+++|.+..    ..|.|.|+.||+|.+|+...
T Consensus        78 ~~~~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~----g~~~C~C~~G~~G~~c~~~~  135 (143)
T 4d90_A           78 IGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLV----ANYSCECPGEFMGRNCQYKG  135 (143)
T ss_dssp             CCEEEECCTTEESTTSCEECCTTTTCCSCTTCEEEEET----TEEEEECCTTCBSTTSCBC-
T ss_pred             CCeEeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCC----CCeEeECCCCCccCCceecC
Confidence            4689999999986            3678999999864    37999999999999999875

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.62  E-value=4.6e-05  Score=59.68  Aligned_cols=46  Identities=28%  Similarity=0.710  Sum_probs=34.7

Q ss_pred             CCCceeeCCCCCCC------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         21 ITFHTYACPPTYAT------------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        21 ~~gy~C~C~~gy~g------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      ..+|.|.|++||.|            ++|.|+|+|.+..    ..|.|.|+.||.|..|+..
T Consensus        63 ~g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~----g~~~C~C~~G~~G~~C~~~  120 (135)
T 2vj3_A           63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKI----NEFQCECPTGFTGHLCQVD  120 (135)
T ss_dssp             SSCEEEECCTTEESSSSCEECCTTTTCCSTTTCEEEECS----SCEEEECCTTEESSSSCEE
T ss_pred             CCCceeeCCCCCcCCcceecCCcccCCCcCCCCEeECCC----CCeEEECCCCCcCCccCcc
Confidence            34578888888875            3677888888753    2688888888888888754

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=97.42  E-value=0.00011  Score=57.44  Aligned_cols=47  Identities=30%  Similarity=0.619  Sum_probs=38.9

Q ss_pred             CCCCceeeCCCCCCC------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         20 NITFHTYACPPTYAT------------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        20 ~~~gy~C~C~~gy~g------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      ...+|.|.|++||.|            ++|.|+++|....    ..|.|.|+.||.|..|+..
T Consensus        24 ~~g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~----g~~~C~C~~G~~G~~C~~~   82 (135)
T 2vj3_A           24 TLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI----GEFQCICMPGYEGVHCEVN   82 (135)
T ss_dssp             CSSSEEEECCTTEESTTSCEECCTTTTCCCCSSCEEEECS----SCEEEECCTTEESSSSCEE
T ss_pred             CCCCEEEECCCCCcCCcccccCccCCCCCCCCCCEEeCCC----CCceeeCCCCCcCCcceec
Confidence            345699999999987            3677899999864    3699999999999999854

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=97.32  E-value=9.5e-05  Score=51.49  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             CCCCCC--CEEEeeccCCCCceEeecCCCCC-CCCCccc
Q psy12432         35 WYCLNG--ATCFTVKIGESLLYNCECADGYM-GQRCEFK   70 (229)
Q Consensus        35 npClNG--GtC~~~~~~~~~~~sC~C~~Gy~-G~rCe~~   70 (229)
                      +||.||  |+|.+..    +.|.|.|+.||+ |.+|+..
T Consensus        17 nPC~nga~gtC~~~~----g~y~C~C~~Gy~~G~~C~~~   51 (61)
T 2k2s_B           17 NPCGPEAAGTCKETN----SGYICRCNQGYRISLDGTGN   51 (61)
T ss_dssp             CSSCSSSCCEEEECS----SEEEEECCTTEEEEECSSSC
T ss_pred             CCCcCCCccccccCC----CceEeECCCCCccCCCCCCC
Confidence            799999  9999863    379999999999 9999864

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=97.24  E-value=0.00026  Score=55.19  Aligned_cols=48  Identities=27%  Similarity=0.657  Sum_probs=36.0

Q ss_pred             CCceeeCCCCCCCC------------------------CCCCCCEEEeecc---CCCCceEeecCCCCCCCCCcc
Q psy12432         22 TFHTYACPPTYATW------------------------YCLNGATCFTVKI---GESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        22 ~gy~C~C~~gy~gn------------------------pClNGGtC~~~~~---~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      .+|.|.|++||.|.                        +|.|+|+|.....   .....|.|.|+.||.|.+|+.
T Consensus        21 g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~~   95 (143)
T 4d90_A           21 GSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH   95 (143)
T ss_dssp             -CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSCE
T ss_pred             CCEEeECCCCCCCCCCccCccccccccccccCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCccc
Confidence            36899999999863                        4778999984210   001369999999999999984

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=97.13  E-value=0.00034  Score=56.84  Aligned_cols=44  Identities=34%  Similarity=0.794  Sum_probs=36.1

Q ss_pred             CceeeCCCCCCC-------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         23 FHTYACPPTYAT-------------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        23 gy~C~C~~gy~g-------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      .+.|.|++||.|             ++|.|+|+|....   ...|.|.|+.||+|.+|+.
T Consensus       113 ~~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~---~~~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          113 PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTG---PDKYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             TTCCEECTTEETTTTCEESCHHHHTCCCCTTCEEEECS---TTCEEEECCTTCCSTTSCC
T ss_pred             CCEEeCCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCC---CCCcEeECCCCCcCcCcCC
Confidence            588999999975             4788999999752   1369999999999999973

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.93  E-value=0.00045  Score=54.79  Aligned_cols=43  Identities=21%  Similarity=0.535  Sum_probs=34.3

Q ss_pred             ceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        24 y~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      |+|+=.+.. .++|.|+|+|....    +.|.|.|+.||.|..||...
T Consensus       115 fICe~~~c~-~~~C~~~g~C~~~~----~~~~c~C~~g~~G~~Ce~~~  157 (162)
T 1g1s_A          115 ALCYTASCQ-DMSCSKQGECLETI----GNYTCSCYPGFYGPECEYVR  157 (162)
T ss_dssp             EEEEECCCC-TTGGGGSEEEEECS----SSEEEEECTTEESTTSCEEC
T ss_pred             EEEEeCCCc-CCCCCCCCEEecCC----CCceEeCCCCCcCcccccCc
Confidence            456555444 37999999999863    37999999999999999874

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=96.80  E-value=0.00096  Score=47.96  Aligned_cols=46  Identities=24%  Similarity=0.362  Sum_probs=35.3

Q ss_pred             CcCCCCCCceeeCCCCCC--------------CCCCCCCCEEEeeccCCCCceEeecCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYA--------------TWYCLNGATCFTVKIGESLLYNCECADGYMGQR   66 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~--------------gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~r   66 (229)
                      +......+|.|.|++||.              .++|.| |+|.+..    ..|.|.|+.||.|..
T Consensus        18 ~C~n~~g~y~C~C~~Gy~~~g~~C~dideC~~~~~C~~-~~C~n~~----g~y~C~C~~G~~g~~   77 (82)
T 1emn_A           18 QCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGN-GTCKNVI----GGFECTCEEGFEPGP   77 (82)
T ss_dssp             EECCCSSCCCEECCTTEEEETTEEEECCGGGTCCTTSS-SCEEECS----SSEEECCSSSSCCCS
T ss_pred             EEEecCCCEEEECCCCeECCCCccCCcccccCCCCCCC-CEeECCC----CCEEeECCCCeEeCC
Confidence            344445679999999995              257877 5998864    369999999999864

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=96.75  E-value=0.00098  Score=52.20  Aligned_cols=46  Identities=22%  Similarity=0.491  Sum_probs=37.3

Q ss_pred             CCCceeeCCCCCCC-------------------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         21 ITFHTYACPPTYAT-------------------------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        21 ~~gy~C~C~~gy~g-------------------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      ..+|.|.|++||.+                         ++|.++++|.+..    ..|.|.|+.||.|..+...
T Consensus        65 ~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~~~~C~n~~----g~y~C~C~~Gy~g~~~~~~  135 (143)
T 2bou_A           65 EGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV----GSYSCRCRPGWKPRHGIPN  135 (143)
T ss_dssp             SSCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCTTSEEEECS----SCEEEECCSSSCBCTTCCS
T ss_pred             CCCeEeECCCCcccCcCccccccCCCCCcCCccCccCcCCCCCCCCEEECCC----CCEEeeCCCCcccCCCCcc
Confidence            34699999999964                         4688889999864    3799999999999876554

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=96.74  E-value=0.00076  Score=65.59  Aligned_cols=34  Identities=26%  Similarity=0.751  Sum_probs=28.8

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecC-CCCCCCCCccc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECA-DGYMGQRCEFK   70 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~-~Gy~G~rCe~~   70 (229)
                      .+||+|||+|....   .+.|.|.|+ .||+|.+||..
T Consensus         6 s~PC~ngG~C~~~~---~~~y~C~C~~~G~~G~~Ce~~   40 (587)
T 3nt1_A            6 SNPCQNRGECMSTG---FDQYKCDCTRTGFYGENCTTP   40 (587)
T ss_dssp             TCCCCTTCEEEEEE---TTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCCCCEeeCCC---CCCeEEecCCCCccCCCCCCc
Confidence            38999999999642   137999999 99999999985

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=96.69  E-value=0.0014  Score=42.88  Aligned_cols=29  Identities=31%  Similarity=0.496  Sum_probs=16.3

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy12432         87 TASIASGASIAVFLVVILCFSLYVHCQRR  115 (229)
Q Consensus        87 ~~~Ia~gI~V~lLLVlii~vvly~~~kRr  115 (229)
                      +..|++|++.++++++++.++++++.+||
T Consensus         9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRR   37 (44)
T 2l2t_A            9 TPLIAAGVIGGLFILVIVGLTFAVYVRRK   37 (44)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEeehHHHHHHHHHHHHHHHHhhhh
Confidence            35577777776666555554443433333

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.66  E-value=0.00068  Score=65.36  Aligned_cols=35  Identities=26%  Similarity=0.764  Sum_probs=29.6

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecC-CCCCCCCCcccC
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECA-DGYMGQRCEFKD   71 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~-~Gy~G~rCe~~~   71 (229)
                      .+||+|||+|....   .+.|.|.|+ .||.|.+||...
T Consensus         7 ~~PC~ngG~C~~~~---~~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            7 YYPCQHQGICVRFG---LDRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             GCCCCTTCEEEEET---TTEEEEECTTSSEETTTTCEEC
T ss_pred             CCCCCCCCCcCCCC---CCceEeeCCCCCcCCCCCCCCc
Confidence            38999999999832   237999999 999999999864

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=96.59  E-value=0.00034  Score=65.71  Aligned_cols=41  Identities=32%  Similarity=0.810  Sum_probs=9.8

Q ss_pred             ceeeCCCCCCCC---------CCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         24 HTYACPPTYATW---------YCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        24 y~C~C~~gy~gn---------pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      +.|.|++||.|.         +|.|+|+|..       .+.|.|..||+|.+|+..+
T Consensus       408 ~~C~C~~G~~G~~C~~~~C~~~C~~~g~C~~-------~~~C~C~~G~~G~~C~~~~  457 (463)
T 2wg3_C          408 GKCCCSPGWEGDFCRTAKCEPACRHGGVCVR-------PNKCLCKKGYLGPQCEQVD  457 (463)
T ss_dssp             SCEEECTTEESTTSCEECC--------------------------------------
T ss_pred             CeECCCCCcCCCcCCcCcCCCCCCCCCEECC-------CCEEECCCCcccCCCCCCc
Confidence            579999999874         6778888874       2689999999999999875

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=96.51  E-value=0.0013  Score=42.99  Aligned_cols=27  Identities=26%  Similarity=0.472  Sum_probs=14.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12432         88 ASIASGASIAVFLVVILCFSLYVHCQR  114 (229)
Q Consensus        88 ~~Ia~gI~V~lLLVlii~vvly~~~kR  114 (229)
                      ..|++|++.+++++++++++++++.+|
T Consensus        11 ~~IA~gVVgGv~~~~ii~~~~~~~~RR   37 (44)
T 2ks1_B           11 PSIATGMVGALLLLLVVALGIGLFMRR   37 (44)
T ss_dssp             SSSTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEeehhHHHHHHHHHHHHHHHHhhh
Confidence            345777776666555555444333333

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=96.48  E-value=0.0012  Score=50.15  Aligned_cols=51  Identities=25%  Similarity=0.501  Sum_probs=37.7

Q ss_pred             CcCCCCCCceeeCCCCCCCCC---------CC--CCC---EEEeeccCCCCceEeecCCCCC----CCCCccc
Q psy12432         16 TPRPNITFHTYACPPTYATWY---------CL--NGA---TCFTVKIGESLLYNCECADGYM----GQRCEFK   70 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnp---------Cl--NGG---tC~~~~~~~~~~~sC~C~~Gy~----G~rCe~~   70 (229)
                      +......+|.|.|++||.|..         |.  |++   +|.+..    +.|.|.|+.||.    |..|+..
T Consensus        27 ~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~~C~n~~----g~y~C~C~~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           27 TCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEV----GWRRCSCAPGYKLGDDLLQCHPA   95 (114)
T ss_dssp             EECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSSEEEECS----SSEEEECCTTEEECTTSSCEEEC
T ss_pred             CCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCCEeECCC----CCEEeECCCCeeECCCCCccCcC
Confidence            344455679999999998754         43  455   898764    379999999999    4567654

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=96.35  E-value=0.0016  Score=50.89  Aligned_cols=43  Identities=21%  Similarity=0.565  Sum_probs=35.0

Q ss_pred             CceeeCCCCCCCC-----------------------CCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         23 FHTYACPPTYATW-----------------------YCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        23 gy~C~C~~gy~gn-----------------------pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      .|.|.|++||.|+                       +|.++++|.+..    ..|.|.|+.||.|..++.
T Consensus        18 ~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~----g~y~C~C~~Gy~g~~~~~   83 (143)
T 2bou_A           18 ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTE----GSYDCVCSPGYEPVSGAK   83 (143)
T ss_dssp             SSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECS----SCEEEEECTTEEETTCCS
T ss_pred             CCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCC----CCeEeECCCCcccCcCcc
Confidence            3899999999752                       688889998864    379999999999986653

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=96.31  E-value=0.0015  Score=51.61  Aligned_cols=52  Identities=23%  Similarity=0.489  Sum_probs=39.0

Q ss_pred             cCCCCCCceeeCCCCCCCCCC------------CCCC---EEEeeccCCCCceEeecCCCCC----CCCCcccC
Q psy12432         17 PRPNITFHTYACPPTYATWYC------------LNGA---TCFTVKIGESLLYNCECADGYM----GQRCEFKD   71 (229)
Q Consensus        17 ~~~~~~gy~C~C~~gy~gnpC------------lNGG---tC~~~~~~~~~~~sC~C~~Gy~----G~rCe~~~   71 (229)
                      ....+.+|.|.|++||.|..|            .||+   +|.+...   ..|.|.|+.||.    |.+|+..+
T Consensus        61 C~~~~g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g---~~y~C~C~~Gy~l~~dG~~C~~~~  131 (142)
T 2c4f_L           61 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG---TKRSCRCHEGYSLLADGVSCTPTV  131 (142)
T ss_dssp             EEEETTEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTT---SCCEEECCTTEEECTTSSCEEESS
T ss_pred             EeCCCCCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCC---CCEEEECCCCceECCCCCCCCCCC
Confidence            333455799999999987533            3566   8987631   169999999999    88998764

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.27  E-value=0.0025  Score=49.61  Aligned_cols=34  Identities=38%  Similarity=0.779  Sum_probs=26.3

Q ss_pred             CCCCCCEEEeeccCCCCce-EeecCCCCCCCCCcccC
Q psy12432         36 YCLNGATCFTVKIGESLLY-NCECADGYMGQRCEFKD   71 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~-sC~C~~Gy~G~rCe~~~   71 (229)
                      ||+|||+|.....  ...+ .|.|+.+|+|..||...
T Consensus         2 pC~nggtC~~~~~--~~~~~~C~Cp~g~~G~~Ce~~~   36 (122)
T 2fd6_A            2 DCLNGGTCVSNKY--FSNIHWCNCPKKFGGQHCEIDK   36 (122)
T ss_dssp             CCCSSCEEEECTT--TTTCEEEECCTTEESTTSCEES
T ss_pred             CCCCcCCcCCCcc--cCCCCCccCCCCCCCccccccC
Confidence            7999999976421  1134 99999999999999753

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=96.26  E-value=0.0034  Score=41.01  Aligned_cols=19  Identities=16%  Similarity=0.450  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy12432         98 VFLVVILCFSLYVHCQRRK  116 (229)
Q Consensus        98 lLLVlii~vvly~~~kRrk  116 (229)
                      +++++.+++++|++++|++
T Consensus        23 l~vi~~l~~~~~~RRR~~~   41 (44)
T 2jwa_A           23 LVVVLGVVFGILIKRRQQK   41 (44)
T ss_dssp             HHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHhheehhhhh
Confidence            3334444444555444444

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=96.18  E-value=0.003  Score=49.81  Aligned_cols=32  Identities=31%  Similarity=0.672  Sum_probs=28.4

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      ++|.|||+|.+..    +.|.|.|+.||.|.+|+..
T Consensus        53 ~pC~n~g~C~~~~----g~y~C~C~~G~~G~~C~~~   84 (142)
T 2c4f_L           53 SPCQNGGSCKDQL----QSYICFCLPAFEGRNCETH   84 (142)
T ss_dssp             CCCCTTCEEEEET----TEEEEECCTTEESTTSCEE
T ss_pred             CCcCCCCEEeCCC----CCEEeeCCCCccCCccccC
Confidence            7999999999864    3799999999999999974

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=96.16  E-value=0.0032  Score=50.15  Aligned_cols=32  Identities=38%  Similarity=0.797  Sum_probs=28.5

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +||.|||+|.+..    +.|.|.|+.||.|..|+..
T Consensus        54 ~pC~n~g~C~~~~----~~y~C~C~~G~~G~~C~~~   85 (146)
T 1x7a_L           54 NPCLNGGLCKDDI----NSYECWCQVGFEGKNCELD   85 (146)
T ss_dssp             CSSCTTCEEEECS----SCEEEECCSSEESTTTCEE
T ss_pred             CCCCCCCEeECCC----CCEEEecCCCCcCCcCCCC
Confidence            7999999998864    3699999999999999876

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=96.07  E-value=0.0015  Score=53.32  Aligned_cols=46  Identities=20%  Similarity=0.472  Sum_probs=38.1

Q ss_pred             CceeeCCCCCCC-----------------CCC-CCCCEEEeeccCCCCceEeecCCCCCCCCCcccCC
Q psy12432         23 FHTYACPPTYAT-----------------WYC-LNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL   72 (229)
Q Consensus        23 gy~C~C~~gy~g-----------------npC-lNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~   72 (229)
                      +|.|.|++||.+                 ++| .++++|.+..    ..|.|.|+.||.|..|+....
T Consensus       115 ~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~~C~~~~~~C~n~~----g~y~C~C~~G~~g~~~~~~~~  178 (186)
T 1z1y_A          115 SAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVE----GVYXCQCMEGFTFDXEXNVCL  178 (186)
T ss_dssp             EEEEEECTEEEEETTTTTEEEEEECCCCCCCCCTTTEEEEEET----TEEEEEECTTCEEETTTTEEE
T ss_pred             CceEECCCCCcccCCCCCcceEcCCCcccccccccCcceecCC----CCeeeECCCCCccCcccccCC
Confidence            689999999975                 156 7899999864    379999999999999987643

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=95.91  E-value=0.0012  Score=53.95  Aligned_cols=49  Identities=20%  Similarity=0.436  Sum_probs=36.6

Q ss_pred             CCceeeCCCCCCC------------CCCCCCCEEEeeccCCCCceEeecCCCCCC-----CCCccc
Q psy12432         22 TFHTYACPPTYAT------------WYCLNGATCFTVKIGESLLYNCECADGYMG-----QRCEFK   70 (229)
Q Consensus        22 ~gy~C~C~~gy~g------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G-----~rCe~~   70 (229)
                      .+|.|.|++||.+            ++|.|+|+|..........|.|.|+.||.|     ..|+..
T Consensus        72 g~y~C~C~~G~~g~~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~  137 (186)
T 1z1y_A           72 NMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXT  137 (186)
T ss_dssp             CSEEEEECTTEEEETTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEE
T ss_pred             CCEECCCCCCCccCCCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEc
Confidence            4799999999985            378889999842100023699999999998     678754

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=95.78  E-value=0.0042  Score=60.90  Aligned_cols=48  Identities=17%  Similarity=0.373  Sum_probs=37.7

Q ss_pred             cCCCCCC-cee-eCCCCCCC-------------CC--CCCCC---EEEeeccCCCCceEee-cCCCCCCCCCc
Q psy12432         17 PRPNITF-HTY-ACPPTYAT-------------WY--CLNGA---TCFTVKIGESLLYNCE-CADGYMGQRCE   68 (229)
Q Consensus        17 ~~~~~~g-y~C-~C~~gy~g-------------np--ClNGG---tC~~~~~~~~~~~sC~-C~~Gy~G~rCe   68 (229)
                      ......+ |.| .|++||.|             ++  |.+++   +|.+..    ..|.|. |+.||.|..|+
T Consensus        17 C~n~~~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~----gsY~C~~C~~Gy~G~~c~   85 (634)
T 1yo8_A           17 CSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQ----PGFHCLPCPPRYRGNQPV   85 (634)
T ss_dssp             EEECTTSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECS----SSEEECCCCTTEEECCCE
T ss_pred             EecCCCCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeecc----CceecccCCCCcccCccc
Confidence            3333334 999 99999987             35  88888   999864    379999 99999998865

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=95.76  E-value=0.0036  Score=52.71  Aligned_cols=52  Identities=23%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCCC----------C---CEEEeeccCCCCceEeecCCCCC----CCCCcccC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCLN----------G---ATCFTVKIGESLLYNCECADGYM----GQRCEFKD   71 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpClN----------G---GtC~~~~~~~~~~~sC~C~~Gy~----G~rCe~~~   71 (229)
                      +......+|.|.|++||.|..|..          +   .+|.+..    +.|.|.|+.||.    |..|+...
T Consensus        55 ~C~n~~g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~~C~n~~----gsy~C~C~~Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B           55 KCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ----NSVVCSCARGYTLADNGKACIPTG  123 (195)
T ss_dssp             --------------------------CCGGGTGGGGCSSEEEEET----TEEEEECCTTEEECTTSSCEEESS
T ss_pred             EeECCCCCeeEeCCCCceeccccccccccccCCCCCCCCEeECCC----CCeEEECCCCceeCCCCCccccCC
Confidence            344445679999999998755532          1   2787753    379999999999    89998764

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=95.74  E-value=0.0035  Score=52.75  Aligned_cols=30  Identities=40%  Similarity=0.789  Sum_probs=25.8

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      .+|.|||.|..       -..|.|+.||.|..|+...
T Consensus       153 ~~C~ngG~Cv~-------P~~C~C~~Gw~G~~C~~~~  182 (188)
T 2ygo_A          153 GGCRNGGFCNE-------RRICECPDGFHGPHCEGTK  182 (188)
T ss_dssp             TCCCTTCEECT-------TSCEECCTTCBTTTTCBC-
T ss_pred             CCCCCCCEeCC-------CCcccCcCCCCCCCCcCCc
Confidence            69999999974       2689999999999999864

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.71  E-value=0.01  Score=42.73  Aligned_cols=45  Identities=22%  Similarity=0.370  Sum_probs=33.8

Q ss_pred             CcCCCCCCceeeCCCCCC-----C-----------CC--CCCCCEEEeeccCCCCceEeecCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYA-----T-----------WY--CLNGATCFTVKIGESLLYNCECADGYMGQ   65 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~-----g-----------np--ClNGGtC~~~~~~~~~~~sC~C~~Gy~G~   65 (229)
                      +......+|.|.|++||.     +           ++  |. +++|.+..    ++|.|.|+.||.|.
T Consensus        17 ~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~-~~~C~n~~----g~y~C~C~~G~~~~   79 (86)
T 1lmj_A           17 QCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGVCHNTE----GSYRCECPPGHQLS   79 (86)
T ss_dssp             CEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTT-TSEEEEET----TEEEEESCTTSCCC
T ss_pred             EEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCC-CCEeEcCC----CCEEEECcCCcccC
Confidence            344445579999999996     3           23  54 57999874    37999999999885

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=95.64  E-value=0.0064  Score=47.58  Aligned_cols=42  Identities=21%  Similarity=0.478  Sum_probs=32.9

Q ss_pred             ceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        24 y~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      |+|+=++.. .+||.++|+|....    ..|.|.|..||.|.+||..
T Consensus       115 fICe~~~~~-~~pc~~~g~C~~~~----~~~~c~C~~g~~g~~Ce~~  156 (157)
T 1g1t_A          115 ALCYTAACT-NTSCSGHGECVETI----NNYTCKCDPGFSGLKCEQI  156 (157)
T ss_dssp             EEEEECCCC-TTGGGGSEEEEEET----TEEEEEECTTEESTTSCEE
T ss_pred             eEeCcCCCC-CCCCCCCCEeecCC----CCeeEECCCCccCcccccc
Confidence            455544443 37999999998863    3799999999999999864

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=95.59  E-value=0.0054  Score=55.02  Aligned_cols=40  Identities=30%  Similarity=0.719  Sum_probs=28.6

Q ss_pred             CceeeCCCCCCCC---------CCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         23 FHTYACPPTYATW---------YCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        23 gy~C~C~~gy~gn---------pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      .+.|.|++||.|.         +|.|+|+|..       .+.|.|..||.|..|+.
T Consensus       164 ~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~-------~~~C~C~~G~~G~~C~~  212 (324)
T 2ygq_A          164 RRICECPDGFHGPHCEKALCTPRCMNGGLCVT-------PGFCICPPGFYGVNCDK  212 (324)
T ss_dssp             TSCEECCTTEESSSSCEESSSSCCCTTCEECS-------SCCEECCTTCBTTTTCB
T ss_pred             CCeEECCCCCcCCCCCCCCCCCCCCCCCEEcC-------CCEEeCCCCccCCCccc
Confidence            3678888888764         4567788853       26788888888877765

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=95.54  E-value=0.0048  Score=48.25  Aligned_cols=51  Identities=24%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             cCCCCCCceeeCCCCCCCCCCCC----------CC---EEEeeccCCCCceEeecCCCCC----CCCCcccC
Q psy12432         17 PRPNITFHTYACPPTYATWYCLN----------GA---TCFTVKIGESLLYNCECADGYM----GQRCEFKD   71 (229)
Q Consensus        17 ~~~~~~gy~C~C~~gy~gnpClN----------GG---tC~~~~~~~~~~~sC~C~~Gy~----G~rCe~~~   71 (229)
                      ....+.+|.|.|++||.|..|..          ++   +|.+..    +.|.|.|+.||.    |..|+..+
T Consensus        56 C~~~~~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~~C~~~~----g~y~C~C~~Gy~l~~~g~~C~~~~  123 (134)
T 2vh0_B           56 CKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQ----NSVVCSCARGYTLADNGKACIPTG  123 (134)
T ss_dssp             -------------------------CCGGGTGGGGCSSEEEEET----TEEEEECCTTEEECTTSSCEEESS
T ss_pred             cccCCCCEEeeCCCCccCCccccCCCCccccCCCCCCCEeECCC----CCEEEECCCCcEECCCCCccCcCC
Confidence            33445578999999998654421          12   787653    369999999998    88887653

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=95.51  E-value=0.0084  Score=55.75  Aligned_cols=29  Identities=34%  Similarity=0.827  Sum_probs=23.9

Q ss_pred             CCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         36 YCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      +|.|||+|...       +.|.|..||.|.+|+...
T Consensus       294 ~C~ngg~C~~~-------~~C~C~~G~~G~~Ce~~~  322 (423)
T 2gy5_A          294 SCNNGEMCDRF-------QGCLCSPGWQGLQCEREG  322 (423)
T ss_dssp             CCTTCCEEETT-------TEEECCTTCBSTTSCBCS
T ss_pred             cCCCCCEecCC-------CceECCCCCcCCCCccCc
Confidence            57789999753       349999999999999863

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=95.47  E-value=0.0041  Score=60.97  Aligned_cols=53  Identities=28%  Similarity=0.568  Sum_probs=39.1

Q ss_pred             cCCCCCCceee-CCCCCCC----------------------------CCCCCCCEEEeeccCCCCceEeecCCCCCC--C
Q psy12432         17 PRPNITFHTYA-CPPTYAT----------------------------WYCLNGATCFTVKIGESLLYNCECADGYMG--Q   65 (229)
Q Consensus        17 ~~~~~~gy~C~-C~~gy~g----------------------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G--~   65 (229)
                      ......+|.|. |++||.|                            ++|.++++|.+........|.|.|+.||.|  .
T Consensus        63 CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~  142 (634)
T 1yo8_A           63 CVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGL  142 (634)
T ss_dssp             EEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSS
T ss_pred             eeeccCceecccCCCCcccCccccccccccccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCc
Confidence            34445579998 9999973                            267788999886410014799999999998  6


Q ss_pred             CCcc
Q psy12432         66 RCEF   69 (229)
Q Consensus        66 rCe~   69 (229)
                      .|+.
T Consensus       143 ~Ce~  146 (634)
T 1yo8_A          143 ICGE  146 (634)
T ss_dssp             SEEE
T ss_pred             cccc
Confidence            8874

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=95.46  E-value=0.0088  Score=48.02  Aligned_cols=35  Identities=37%  Similarity=0.748  Sum_probs=26.9

Q ss_pred             CCCCCCCEEEeeccCCCCce-EeecCCCCCCCCCcccC
Q psy12432         35 WYCLNGATCFTVKIGESLLY-NCECADGYMGQRCEFKD   71 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~-sC~C~~Gy~G~rCe~~~   71 (229)
                      -+|+|||+|.....  ...+ .|.|+.||.|..|+...
T Consensus        13 cpC~NGGtC~~~~~--~s~~~~C~Cp~g~~G~~Cei~~   48 (145)
T 2i9a_A           13 CDCLNGGTCVSNKY--FSNIHWCNCPKKFGGQHCEIDK   48 (145)
T ss_dssp             CCCCTTCEEEECSS--STTCEEEECCTTEESTTSCEES
T ss_pred             CCCCCCCCcCCCcc--ccCCccccCCCCCCCCceeccc
Confidence            48999999976421  1134 89999999999999764

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=95.41  E-value=0.0051  Score=55.20  Aligned_cols=41  Identities=37%  Similarity=0.835  Sum_probs=31.3

Q ss_pred             CceeeCCCCCCCC---------CCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         23 FHTYACPPTYATW---------YCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        23 gy~C~C~~gy~gn---------pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      .+.|.|++||.|.         +|.|+|+|..       .+.|.|..||.|..|+..
T Consensus       196 ~~~C~C~~G~~G~~C~~~~C~~~C~~~G~C~~-------~~~C~C~~G~~G~~C~~~  245 (324)
T 2ygq_A          196 PGFCICPPGFYGVNCDKANCSTTCFNGGTCFY-------PGKCICPPGLEGEQCEIS  245 (324)
T ss_dssp             SCCEECCTTCBTTTTCBCCCSSCCCSSCCBSC-------SSCBCCCTTCCTTTTC--
T ss_pred             CCEEeCCCCccCCCcccCcCCCCCCCCCeeCC-------CCeeeCCCCccCCCCCcC
Confidence            3789999999874         5667888853       368999999999999853

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=95.30  E-value=0.003  Score=53.24  Aligned_cols=32  Identities=31%  Similarity=0.699  Sum_probs=0.0

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +||.|||+|.+..    +.|.|.|+.||.|..|+..
T Consensus        48 ~pC~ngg~C~n~~----g~y~C~C~~Gf~G~~Ce~~   79 (195)
T 1nfu_B           48 SPCQNQGKCKDGL----GEYTCTCLEGFEGKNCELF   79 (195)
T ss_dssp             ------------------------------------
T ss_pred             CCCCCCCEeECCC----CCeeEeCCCCceecccccc
Confidence            7999999998763    3699999999999999874

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=95.23  E-value=0.016  Score=41.75  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=34.5

Q ss_pred             cCCCCCCceeeCCCCCC----C-----------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         17 PRPNITFHTYACPPTYA----T-----------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        17 ~~~~~~gy~C~C~~gy~----g-----------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      ......+|.|.|++||.    +           ++|.  ++|.+..    ++|.|.|+ +|.|..|+..
T Consensus        18 C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~~~~C~--~~C~n~~----g~y~C~C~-g~~G~~~~~~   79 (87)
T 1z6c_A           18 CKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCA--QLCVNYP----GGYTCYCD-GKKGFKLAQD   79 (87)
T ss_dssp             CCCBTTBCCCSSSTTCEEETTTTEEECCCHHHHSCCS--SEECCCS----SSCCEECC-SSSCCBCCTT
T ss_pred             eECCCCCEEEECCCCceECCCCCcCCCcCeeCCCCCC--CEEEccC----CCEEEECC-CCcCCcccCC
Confidence            34444579999999997    3           3564  6887763    37999998 8888777654

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=95.16  E-value=0.0079  Score=45.58  Aligned_cols=31  Identities=26%  Similarity=0.711  Sum_probs=26.6

Q ss_pred             CCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        37 ClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      |.|+|+|.+..    +.|.|.|+.||.|..|+...
T Consensus        22 C~~~g~C~~~~----~~y~C~C~~G~~G~~C~~~~   52 (114)
T 1aut_L           22 CCGHGTCIDGI----GSFSCDCRSGWEGRFCQREV   52 (114)
T ss_dssp             TTTSEEECCCS----SCCCEEECTTEESTTSCEEC
T ss_pred             CCCcCCCCCCC----CCcEeeCCCCCcCCCcCcCC
Confidence            89999998753    36999999999999999753

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=95.15  E-value=0.0039  Score=49.66  Aligned_cols=51  Identities=20%  Similarity=0.371  Sum_probs=36.5

Q ss_pred             cCCCCCCceeeCCCCCCCCCCC------C--CC---EE-EeeccCCCCceEeecCCCCC----CCCCcccC
Q psy12432         17 PRPNITFHTYACPPTYATWYCL------N--GA---TC-FTVKIGESLLYNCECADGYM----GQRCEFKD   71 (229)
Q Consensus        17 ~~~~~~gy~C~C~~gy~gnpCl------N--GG---tC-~~~~~~~~~~~sC~C~~Gy~----G~rCe~~~   71 (229)
                      ......+|.|.|++||.|..|.      .  ++   +| .+..    +.|.|.|+.||.    |..|+..+
T Consensus        62 C~~~~~~y~C~C~~G~~G~~C~~~deC~~~~~~C~~~C~~n~~----g~y~C~C~~Gy~l~~dG~~C~~~~  128 (146)
T 1x7a_L           62 CKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGAD----SKVLCSCTTGYRLAPDQKSCKPAV  128 (146)
T ss_dssp             EEECSSCEEEECCSSEESTTTCEECCTTSGGGSCSSBCCCCSS----SCCCCBCCTTEEECTTSSSEEECS
T ss_pred             eECCCCCEEEecCCCCcCCcCCCCccccCCCCCCcCCCCCCCC----CCEEeEcCCCcEeCCCCCcCCCCC
Confidence            3334457999999999875432      1  22   67 5542    379999999999    88998764

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=95.12  E-value=0.021  Score=43.52  Aligned_cols=38  Identities=21%  Similarity=0.557  Sum_probs=28.8

Q ss_pred             CCceeeCCCCCC---C------------CCCCCCCEEEeeccCCCCceEeecCCCCCCC
Q psy12432         22 TFHTYACPPTYA---T------------WYCLNGATCFTVKIGESLLYNCECADGYMGQ   65 (229)
Q Consensus        22 ~gy~C~C~~gy~---g------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~   65 (229)
                      .+|.|.|++||.   +            ++|  +++|.+..    +.|.|.|+.||.|.
T Consensus        59 ~~y~C~C~~Gy~~~~g~~C~dideC~~~~~C--~~~C~n~~----g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           59 TQASCECPEGYILDDGFICTDIDECENGGFC--SGVCHNLP----GTFECICGPDSALA  111 (118)
T ss_dssp             STTCEECCTTEEEETTTEEEECCHHHHCSSC--SSEEEECS----SSEEEEECSSSSCE
T ss_pred             CCeEeECCCCccCCCCCccccccccCCCCCC--cCeEEeCC----CCEEEECCCCCccC
Confidence            568899999987   3            456  67888763    36899999998774

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=95.11  E-value=0.006  Score=53.38  Aligned_cols=49  Identities=27%  Similarity=0.420  Sum_probs=34.4

Q ss_pred             cCCCCCCceeeCCCCCCCCCCC-------C---C---CEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         17 PRPNITFHTYACPPTYATWYCL-------N---G---ATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        17 ~~~~~~gy~C~C~~gy~gnpCl-------N---G---GtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      ......+|.|.|++||.|..|.       .   +   ..|.+.    .+.|.|.|+.||.|..-..
T Consensus        19 C~~~~~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~~C~~~----~g~~~C~C~~g~~~~~~~~   80 (317)
T 3h5c_B           19 CQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG----QESYTCSCAQGYRLGEDHK   80 (317)
T ss_dssp             CCCCSSSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSSEEECC----SSSCEEECCTTEECCTTSS
T ss_pred             eECCCCCeEEECCCCCcCCccccCcccCCCCCCCCCcCccccC----CCeeEEecccccccccccc
Confidence            3444567999999999987775       1   1   245543    4789999999999875433

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=95.07  E-value=0.0062  Score=56.63  Aligned_cols=40  Identities=28%  Similarity=0.610  Sum_probs=33.7

Q ss_pred             eeeCCCCCCCC-------CCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         25 TYACPPTYATW-------YCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        25 ~C~C~~gy~gn-------pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      .|.|++||.|.       +|.|+|+|...      .+.|.|+.||.|.+|+..
T Consensus       186 ~c~C~~g~~G~~C~~~C~~C~~~G~C~~~------~g~C~C~~G~~G~~Ce~~  232 (423)
T 2gy5_A          186 VRRCEAQKWGPECNHLCTACMNNGVCHED------TGECICPPGFMGRTCEKA  232 (423)
T ss_dssp             ECSSCTTEESTTSCEECCCCCTTCEECTT------TCCEECCTTEESTTSCEE
T ss_pred             CCcCCCCCCCCCCCCCCCCCCCCCEEECC------CCcEeCCCCccCCCcccc
Confidence            57899999873       78899999752      489999999999999975

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=95.05  E-value=0.00093  Score=59.11  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=27.2

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      +||+|||+|.+..    ..|.|.|+.||+|.+|+...
T Consensus       105 ~pC~ngG~C~~~~----~sy~C~C~~Gf~G~~Ce~~~  137 (267)
T 4fbr_A          105 IKSNDGGKTLTGT----TTYNGEGPIGFKSEVTDGDT  137 (267)
T ss_dssp             EECSSTTSEEEEE----EEETTSCCEEEEEEECCCCE
T ss_pred             CCCCCCCEEecCC----ccEEeeCCCCccccCCCCCc
Confidence            3788888888753    37999999999999999763

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=94.92  E-value=0.0045  Score=48.42  Aligned_cols=32  Identities=31%  Similarity=0.699  Sum_probs=0.0

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +||.|||+|.+..    ..|.|.|+.||.|..|+..
T Consensus        48 ~pC~n~g~C~~~~----~~y~C~C~~G~~G~~C~~~   79 (134)
T 2vh0_B           48 SPCQNQGKCKDGL----GEYTCTCLEGFEGKNCELF   79 (134)
T ss_dssp             ------------------------------------
T ss_pred             CCCCCcCCcccCC----CCEEeeCCCCccCCccccC
Confidence            7999999998763    3699999999999999874

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=94.88  E-value=0.018  Score=52.30  Aligned_cols=33  Identities=21%  Similarity=0.516  Sum_probs=28.2

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCC-CCCCCCCccc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECAD-GYMGQRCEFK   70 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~-Gy~G~rCe~~   70 (229)
                      .+||.|||+|....    ..|.|.|+. +|.|..|+..
T Consensus       190 ~~pC~n~g~C~~~~----~~~~C~C~~~~~~G~~C~~~  223 (410)
T 3asi_A          190 EDSCSNQGVCLQQW----DGFSCDCSMTSFSGPLCNDP  223 (410)
T ss_dssp             TTSSSTTCEEEECS----SSEEEECTTTSEESTTSCEE
T ss_pred             cccCCCCCEecCCC----CCceEeccCCcccCCCCCCC
Confidence            38999999998753    379999996 9999999964

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=94.75  E-value=0.025  Score=49.33  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=15.7

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCCCCCEEEe
Q psy12432         16 TPRPNITFHTYACPPTYATWYCLNGATCFT   45 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpClNGGtC~~   45 (229)
                      +......+|.|.|++||.+..  ++-.|..
T Consensus        57 ~C~~~~g~~~C~C~~g~~~~~--~~~~C~~   84 (317)
T 3h5c_B           57 FCLPGQESYTCSCAQGYRLGE--DHKQCVP   84 (317)
T ss_dssp             EEECCSSSCEEECCTTEECCT--TSSCCEE
T ss_pred             ccccCCCeeEEeccccccccc--ccccccc
Confidence            344444567788887776532  3345554

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=94.31  E-value=0.0087  Score=45.68  Aligned_cols=44  Identities=30%  Similarity=0.639  Sum_probs=32.1

Q ss_pred             CCCceeeCCCCCCCC---------CCCCC---CEEEeeccCCCCceEeecCCCCC---CCCCcc
Q psy12432         21 ITFHTYACPPTYATW---------YCLNG---ATCFTVKIGESLLYNCECADGYM---GQRCEF   69 (229)
Q Consensus        21 ~~gy~C~C~~gy~gn---------pClNG---GtC~~~~~~~~~~~sC~C~~Gy~---G~rCe~   69 (229)
                      ..+|.|.|++||.+.         .|.++   ++|.+     ...|.|.|+.||.   |..|+.
T Consensus        21 ~g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~~~C~~-----~~~y~C~C~~Gy~~~~g~~C~d   79 (118)
T 1dx5_I           21 QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDP-----NTQASCECPEGYILDDGFICTD   79 (118)
T ss_dssp             SSCEEEECCTTEEEETTEEEEEEECCCSSEEECEECT-----TSTTCEECCTTEEEETTTEEEE
T ss_pred             CCCEEeECCCCccccCCCCCccccccCCCCCCCcccC-----CCCeEeECCCCccCCCCCcccc
Confidence            457999999999864         23343   45543     2369999999999   888853

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=94.23  E-value=0.0093  Score=45.10  Aligned_cols=44  Identities=18%  Similarity=0.454  Sum_probs=13.0

Q ss_pred             CCCCCCceeeCCCCCCC---C------CCCCC----CEEEeeccCCCCceEeecCCCCCCC
Q psy12432         18 RPNITFHTYACPPTYAT---W------YCLNG----ATCFTVKIGESLLYNCECADGYMGQ   65 (229)
Q Consensus        18 ~~~~~gy~C~C~~gy~g---n------pClNG----GtC~~~~~~~~~~~sC~C~~Gy~G~   65 (229)
                      .....+|.|.|++||.+   .      .|.+.    ++|.+..    ++|.|.|+.||.|.
T Consensus        44 ~n~~g~y~C~C~~Gy~g~~g~~C~dideC~~~~~C~~~C~n~~----gsy~C~C~~Gy~~~  100 (107)
T 2w2n_E           44 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLE----GGYKCQCEEGFQLD  100 (107)
T ss_dssp             ECCSBSCEEECCTTCEEETTTEEEC------------------------------------
T ss_pred             EeCCCCeEEECCCCccccCCCccccccccCCCCCcCCeeecCC----CCEEEECCCCceEC
Confidence            33445799999999975   1      33321    4666543    36999999999875

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=94.16  E-value=0.032  Score=43.62  Aligned_cols=38  Identities=24%  Similarity=0.570  Sum_probs=30.1

Q ss_pred             ceeeCCCCCC---C-------------CCCCCCCEEEeeccCCCCceEeecCCCCCCCC
Q psy12432         24 HTYACPPTYA---T-------------WYCLNGATCFTVKIGESLLYNCECADGYMGQR   66 (229)
Q Consensus        24 y~C~C~~gy~---g-------------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~r   66 (229)
                      |.|.|++||.   |             ++|.|| +|.+..    ++|.|.|+.||.|..
T Consensus        88 ~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~g-~C~n~~----g~y~C~C~~Gy~g~~  141 (147)
T 2w86_A           88 VDPICGKGYSRIKGTQCEDIDECEVFPGVCKNG-LCVNTR----GSFKCQCPSGMTLDA  141 (147)
T ss_dssp             CCTTTCTTEEEEETTEEEECCHHHHSTTCSSSS-EEEEET----TEEEEECCTTCCBCT
T ss_pred             CcccCCCccccCCCCccCccccccCCCCCCCCC-EEECCC----CCEEeeCCCCCccCC
Confidence            6789999993   3             248875 999874    379999999999864

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=93.99  E-value=0.075  Score=38.73  Aligned_cols=43  Identities=12%  Similarity=0.246  Sum_probs=30.5

Q ss_pred             CceeeCCCCCCCCCCCCCCEEEeec-cCCCCceEeecCCCCCCCCCc
Q psy12432         23 FHTYACPPTYATWYCLNGATCFTVK-IGESLLYNCECADGYMGQRCE   68 (229)
Q Consensus        23 gy~C~C~~gy~gnpClNGGtC~~~~-~~~~~~~sC~C~~Gy~G~rCe   68 (229)
                      .|.|.|.+||.|..|..+ .|.... ......|.|.|+.||.  +|+
T Consensus         1 sy~C~C~~g~~g~~c~~~-~c~~~pC~n~~~~y~C~C~~G~~--~C~   44 (91)
T 1tpg_A            1 SYQVICRDEKTQMIYQQH-QSWLRPVLRSNRVEYCWCNSGRA--QCH   44 (91)
T ss_dssp             CCCCCCBCSSSCCBCCSS-CEEEEECSSSSCEEEEECSSSCC--BCC
T ss_pred             CeeeECCCCCcCCeECCC-cccCCccccCCCCcEeECCCCCc--ccc
Confidence            488999999998877544 343321 0012479999999998  887

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=93.03  E-value=0.018  Score=51.66  Aligned_cols=44  Identities=23%  Similarity=0.570  Sum_probs=18.5

Q ss_pred             CCceeeCCCCCC----CC------------CCCCCCEEEeeccCCCCceEeecCCCCC----CCCCcccC
Q psy12432         22 TFHTYACPPTYA----TW------------YCLNGATCFTVKIGESLLYNCECADGYM----GQRCEFKD   71 (229)
Q Consensus        22 ~gy~C~C~~gy~----gn------------pClNGGtC~~~~~~~~~~~sC~C~~Gy~----G~rCe~~~   71 (229)
                      .+|.|.|++||.    |.            +|.+  .|.+..    ++|.|.|..||.    |..|+...
T Consensus        22 g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~--~C~~~~----g~~~C~C~~g~~l~~d~~~C~~~~   85 (386)
T 3v65_B           22 GAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNSE----GAFQCWCEAGYELRPDRRSCKALG   85 (386)
T ss_dssp             ------------------------------CCTT--EEC---------CCEECCTTEEECTTSSCEEECS
T ss_pred             CCcEeECCCCceECCCCCccCccceeCCcCcccC--cCCCCC----CCCeEEECCCceEcCCCCeECCcc
Confidence            359999999997    32            3333  266543    369999999998    78898654

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=92.79  E-value=0.079  Score=55.04  Aligned_cols=34  Identities=21%  Similarity=0.531  Sum_probs=28.8

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecC-CCCCCCCCcccC
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECA-DGYMGQRCEFKD   71 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~-~Gy~G~rCe~~~   71 (229)
                      .+||.|||+|....    ..|.|.|+ .+|.|..|+...
T Consensus      1022 ~~pC~ngG~C~~~~----~~~~C~C~~~g~~G~~C~~~~ 1056 (1245)
T 3qcw_A         1022 EDSCSNQGVCLQQW----DGFSCDCSMTSFSGPLCNDPG 1056 (1245)
T ss_dssp             TTSSSSSCEEEEET----TEEEEECTTSSCBSTTSCBCC
T ss_pred             CCcCCCCCEeCCCC----CCCEEECCCCCCCCCCccCCC
Confidence            38999999999763    27999999 699999998753

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=92.50  E-value=0.031  Score=52.81  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=0.0

Q ss_pred             CCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         36 YCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      +|.|+|.|...-  +...+.|.|..||.|.+|++
T Consensus       494 ~C~~~gs~~~~C--~~~tG~C~C~~G~~G~~Ceq  525 (525)
T 4aqs_A          494 DCDLGGALNNSC--SEDSGQCSCLPHMIGRQCNE  525 (525)
T ss_dssp             ----------------------------------
T ss_pred             CCCCCCccCCcc--CCCCCeeECCCCCcCCCCCC
Confidence            345566554321  11235799999999999984

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=91.96  E-value=0.01  Score=52.48  Aligned_cols=48  Identities=15%  Similarity=0.097  Sum_probs=37.9

Q ss_pred             CCCCceeeCCCCCC---C-----------CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         20 NITFHTYACPPTYA---T-----------WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        20 ~~~gy~C~C~~gy~---g-----------npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      .|.++.+.|.+|+.   +           .+|.|||+|++..    +.|.|.|+.||+|.+||...
T Consensus         9 ~~Gg~s~~~~pgg~~~~g~~~~~n~~~~~~~c~ngG~C~~g~----~~y~C~Cp~Gf~G~~Ce~ni   70 (267)
T 4fbr_A            9 QWGGSQATWNPGGLWLIGARDKQNVVALDIKSDDGGKTLKGT----MTYNGEGPIGFRGTLSSANN   70 (267)
T ss_dssp             ECSSTTSCCEEEEEEECCCCSSCCEEEEEEECSSTTSEEEEE----EEETTSCCEEEEEEECSTTE
T ss_pred             cCCcccCCcCCCCceeeccccccccccCCCCcCCCCeecCCC----CCeEEeCCCCcccccccccc
Confidence            46677788877632   1           2899999999864    37999999999999998764

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=91.39  E-value=0.092  Score=35.62  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=18.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHH--HHHHhh
Q psy12432         86 ETASIASGASIAVFLVVILCFSLYV--HCQRRK  116 (229)
Q Consensus        86 ~~~~Ia~gI~V~lLLVlii~vvly~--~~kRrk  116 (229)
                      .++.|+++++.++|++.++..++|.  ++||++
T Consensus         8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~   40 (54)
T 2l8s_A            8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPL   40 (54)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            4567777777777666555555543  344444

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=91.36  E-value=0.15  Score=34.49  Aligned_cols=31  Identities=16%  Similarity=0.299  Sum_probs=18.9

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHH--HHHHhh
Q psy12432         86 ETASIASGASIAVFLVVILCFSLYV--HCQRRK  116 (229)
Q Consensus        86 ~~~~Ia~gI~V~lLLVlii~vvly~--~~kRrk  116 (229)
                      .++.|+++++.++|++.++..++|.  ++||++
T Consensus        11 p~wiIi~svl~GLllL~li~~~LwK~GFFkR~~   43 (54)
T 2knc_A           11 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR   43 (54)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            4677777777777766665555543  244444

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=91.31  E-value=0.1  Score=51.61  Aligned_cols=38  Identities=24%  Similarity=0.641  Sum_probs=27.3

Q ss_pred             ceeeCCCCCCCC-----------------CCCCCCEEEeeccCCCCceEeec-CCCCCCCCCcc
Q psy12432         24 HTYACPPTYATW-----------------YCLNGATCFTVKIGESLLYNCEC-ADGYMGQRCEF   69 (229)
Q Consensus        24 y~C~C~~gy~gn-----------------pClNGGtC~~~~~~~~~~~sC~C-~~Gy~G~rCe~   69 (229)
                      +.|.|++||.|.                 +|.|+|+|..        ..|.| ..||.|.+|+.
T Consensus       545 g~C~C~~Gy~G~~CeC~~~~~~C~~~~g~~C~~~G~C~~--------g~C~C~~~Gy~G~~Ce~  600 (690)
T 3fcs_B          545 GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC--------GSCVCIQPGSYGDTCEK  600 (690)
T ss_dssp             TEEEECTTEESSSSCEECCCTTTBCTTSSBTSSSCEEET--------TEEECCSTTCBSTTSCB
T ss_pred             CeeECcCCCcCCCCccCCCCCcccCCCCCCCCCCCEEeC--------CEEECCCCCccCCCcCc
Confidence            456666666543                 4666788842        38999 89999999987

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=91.26  E-value=0.33  Score=35.16  Aligned_cols=20  Identities=10%  Similarity=0.094  Sum_probs=10.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHH
Q psy12432         88 ASIASGASIAVFLVVILCFS  107 (229)
Q Consensus        88 ~~Ia~gI~V~lLLVlii~vv  107 (229)
                      +.|++|+++++||+++++++
T Consensus        11 ~~Iv~gvi~gilliGlllll   30 (79)
T 2knc_B           11 LVVLLSVMGAILLIGLAALL   30 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            45566666665555544433

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=90.97  E-value=0.078  Score=52.36  Aligned_cols=37  Identities=19%  Similarity=0.514  Sum_probs=28.9

Q ss_pred             ceeeCC----CCCCCC---------------CCCCCCEEEeeccCCCCceEeecCCCCCCCCCc
Q psy12432         24 HTYACP----PTYATW---------------YCLNGATCFTVKIGESLLYNCECADGYMGQRCE   68 (229)
Q Consensus        24 y~C~C~----~gy~gn---------------pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe   68 (229)
                      +.|.|+    +||.|.               +|.|+|+|..        +.|.|..||+|..|+
T Consensus       504 g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~--------g~C~C~~Gy~G~~Ce  559 (690)
T 3fcs_B          504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC--------GDCLCDSDWTGYYCN  559 (690)
T ss_dssp             SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET--------TEEEECTTEESSSSC
T ss_pred             CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC--------CeeECcCCCcCCCCc
Confidence            467887    777764               3556788842        789999999999999

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=90.84  E-value=0.098  Score=41.46  Aligned_cols=26  Identities=23%  Similarity=0.699  Sum_probs=21.1

Q ss_pred             CCCCCCEEEeeccCCCCceEeecCCCCCCCC
Q psy12432         36 YCLNGATCFTVKIGESLLYNCECADGYMGQR   66 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~r   66 (229)
                      +|.| |+|.+..    .+|.|.|+.||.|..
T Consensus       131 ~C~~-g~C~n~~----gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A          131 LCQG-GKCINTF----GSFQCRCPTGYYLNE  156 (162)
T ss_dssp             GGBT-SEEEECS----SCEEEECCTTCCBCT
T ss_pred             CcCC-CEeEcCC----CCEEeeCCCCccCCC
Confidence            5877 5999864    379999999999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=90.80  E-value=0.074  Score=48.01  Aligned_cols=45  Identities=18%  Similarity=0.431  Sum_probs=29.9

Q ss_pred             cCCCCCCceeeCCCCCC---CC------CCCCC----CEEEeeccCCCCceEeecCCCCCCC
Q psy12432         17 PRPNITFHTYACPPTYA---TW------YCLNG----ATCFTVKIGESLLYNCECADGYMGQ   65 (229)
Q Consensus        17 ~~~~~~gy~C~C~~gy~---gn------pClNG----GtC~~~~~~~~~~~sC~C~~Gy~G~   65 (229)
                      ......+|.|.|++||.   +.      .|...    ..|.+..    ++|.|.|..||.+.
T Consensus        14 C~~~~~~y~C~C~~G~~~~~~~~C~dideC~~~~~C~~~C~n~~----g~~~C~C~~g~~~~   71 (400)
T 3p5b_L           14 CNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLE----GGYKCQCEEGFQLD   71 (400)
T ss_dssp             EEECSSSEEEECCTTEEECSSSCEEECCCCSTTSSCSSCCBCCS----SSCBCCCCTTCCCC
T ss_pred             eECCCCCeEEECCCCCCcCCCCcccCchhhhccCCCCCccCCCc----cceeeecccccccc
Confidence            33344579999999996   32      23211    2565542    37999999999875

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=90.40  E-value=0.076  Score=49.73  Aligned_cols=29  Identities=38%  Similarity=0.831  Sum_probs=0.0

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      .+|.|||+|...      . .|.|+.||.|..|+.-
T Consensus       371 ~~C~ngg~C~~~------~-~C~C~~G~~G~~Ce~c  399 (426)
T 3zyj_B          371 LHCQNGGTCHNN------V-RCLCPAAYTGILCEKL  399 (426)
T ss_dssp             ------------------------------------
T ss_pred             ccCCCCCCcCCC------C-CCcCCCCCcCCCCcCC
Confidence            489999999763      2 8999999999998864

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=90.27  E-value=0.15  Score=53.07  Aligned_cols=33  Identities=33%  Similarity=0.760  Sum_probs=28.0

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecC-CCCCCCCCccc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECA-DGYMGQRCEFK   70 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~-~Gy~G~rCe~~   70 (229)
                      .+||.|||.|....    ..|.|.|+ .||.|..|+..
T Consensus       624 ~~pC~ngg~C~~~~----~~~~C~C~~~g~~G~~C~~~  657 (1245)
T 3qcw_A          624 SNPCKNNGMCRDGW----NRYVCDCSGTGYLGRSCERE  657 (1245)
T ss_dssp             SCCCCTTCEEEECS----SSEEEECTTTTEESTTSCEE
T ss_pred             ccCCCCCCEEeCCC----CCeEEECCCCCcccccCccc
Confidence            37999999999752    37999999 79999999863

>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A

Probab=90.16  E-value=0.68  Score=29.71  Aligned_cols=29  Identities=7%  Similarity=0.086  Sum_probs=17.7

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12432         86 ETASIASGASIAVFLVVILCFSLYVHCQR  114 (229)
Q Consensus        86 ~~~~Ia~gI~V~lLLVlii~vvly~~~kR  114 (229)
                      ....|++|++.++++++++++.+|..+..
T Consensus         8 n~~~Iv~gvi~~ivliGl~lLliwk~~~~   36 (43)
T 2k9j_B            8 DILVVLLSVMGAILLIGLAALLIWKLLIT   36 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEeehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35667777777777666666555444433

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=90.09  E-value=0.093  Score=37.29  Aligned_cols=31  Identities=32%  Similarity=0.775  Sum_probs=24.9

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCC--CCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYM--GQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~--G~rCe~~   70 (229)
                      ++|.| |+|.+..    ..|.|.|+.||.  |..|+..
T Consensus        12 ~~C~~-g~C~n~~----g~y~C~C~~Gy~~~g~~C~di   44 (82)
T 1emn_A           12 DVCKH-GQCINTD----GSYRCECPFGYILAGNECVDT   44 (82)
T ss_dssp             TSCSS-SEECCCS----SCCCEECCTTEEEETTEEEEC
T ss_pred             CCcCC-CEEEecC----CCEEEECCCCeECCCCccCCc
Confidence            68987 7998763    379999999997  8888643

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=89.50  E-value=0.064  Score=43.21  Aligned_cols=15  Identities=33%  Similarity=1.015  Sum_probs=7.3

Q ss_pred             eEeecCCCCCCCCCc
Q psy12432         54 YNCECADGYMGQRCE   68 (229)
Q Consensus        54 ~sC~C~~Gy~G~rCe   68 (229)
                      +.|.|..||.|..|+
T Consensus        83 ~~C~C~~G~~G~~C~   97 (169)
T 2vj2_A           83 GDCRCQYGWQGLYCD   97 (169)
T ss_dssp             TCCEECTTEESSSSC
T ss_pred             CeeECCCCCCCCCcc
Confidence            444455555554444

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=89.42  E-value=0.097  Score=32.87  Aligned_cols=15  Identities=20%  Similarity=0.558  Sum_probs=8.5

Q ss_pred             HHHhhhHHHHHHHHH
Q psy12432         88 ASIASGASIAVFLVV  102 (229)
Q Consensus        88 ~~Ia~gI~V~lLLVl  102 (229)
                      ..|++++.+++++++
T Consensus        13 ~~I~~~vv~Gv~ll~   27 (41)
T 2k9y_A           13 LAVIGGVAVGVVLLL   27 (41)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             EEEEeehhHHHHHHH
Confidence            445666666665544

>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1

Probab=89.39  E-value=0.12  Score=32.10  Aligned_cols=16  Identities=31%  Similarity=0.299  Sum_probs=6.9

Q ss_pred             HHhhhHHHHHHHHHHHH
Q psy12432         89 SIASGASIAVFLVVILC  105 (229)
Q Consensus        89 ~Ia~gI~V~lLLVlii~  105 (229)
                      .|+.|++. +|+++++.
T Consensus         9 sIaagVvg-lll~vii~   24 (35)
T 1iij_A            9 FIIATVVG-VLLFLILV   24 (35)
T ss_dssp             HHHHHHHH-HHHHHHHT
T ss_pred             EeHHHHHH-HHHHHHHH
Confidence            34555444 44333333

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=88.97  E-value=0.16  Score=50.14  Aligned_cols=26  Identities=31%  Similarity=0.677  Sum_probs=20.8

Q ss_pred             CCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         36 YCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      +|.|+|+|..        ..|.|..||.|.+|+.
T Consensus       567 ~Cs~~G~C~~--------g~C~C~~Gy~G~~Ce~  592 (687)
T 3k6s_B          567 ECSGRGRCRC--------NVCECHSGYQLPLCQE  592 (687)
T ss_dssp             BTSSSCCBCS--------SCBCCSTTCCTTTTCC
T ss_pred             CCCCCCcCCC--------CEEECCCCCcCCCCCC
Confidence            4666677742        5799999999999997

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=88.65  E-value=0.23  Score=39.85  Aligned_cols=32  Identities=34%  Similarity=0.790  Sum_probs=26.1

Q ss_pred             CCCCCCEEEeeccCCCCceEe-ecCCCCCCCCCcc
Q psy12432         36 YCLNGATCFTVKIGESLLYNC-ECADGYMGQRCEF   69 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC-~C~~Gy~G~rCe~   69 (229)
                      +|.|+++|.....  ...+.| .|+.+|+|.+||.
T Consensus         2 ~C~~~g~C~~~~~--~g~~~C~~C~~g~~G~~Ce~   34 (162)
T 1klo_A            2 PCPGGSSCAIVPK--TKEVVCTHCPTGTAGKRCEL   34 (162)
T ss_dssp             CSCTTCCEEECSS--SCCEEECSCCTTEESTTSCE
T ss_pred             cCcCcCcccccCC--CCCEEeCCCCCCCcCCCCcC
Confidence            6889999987542  135899 7999999999996

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=88.15  E-value=0.13  Score=48.46  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=34.5

Q ss_pred             CcCCCCCCcee-eCCCCCCCCC-----------CCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         16 TPRPNITFHTY-ACPPTYATWY-----------CLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        16 ~~~~~~~gy~C-~C~~gy~gnp-----------ClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      ...+++.|..| .|.+||.|..           |.++|+|.....=+...+.|.|..||.|.+|+.
T Consensus       410 ~C~~g~~G~~C~~C~~Gy~G~~c~~~~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~  475 (525)
T 4aqs_A          410 RCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ  475 (525)
T ss_dssp             CBCTTEETTTTCEECTTEECCCTTSTTSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC
T ss_pred             CCCCCCCCCcccCCCCCCcCCCCCCCCCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCccc
Confidence            34556667777 7888887643           444444433210012246899999999999985

>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A

Probab=87.96  E-value=0.26  Score=31.68  Aligned_cols=25  Identities=16%  Similarity=0.260  Sum_probs=16.8

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHH
Q psy12432         86 ETASIASGASIAVFLVVILCFSLYV  110 (229)
Q Consensus        86 ~~~~Ia~gI~V~lLLVlii~vvly~  110 (229)
                      .++.|+++++.+++++.++..++|.
T Consensus         9 p~wiIi~s~l~GLllL~li~~~LwK   33 (42)
T 2k1a_A            9 PIWWVLVGVLGGLLLLTILVLAMWK   33 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777777777766666655553

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.82  E-value=0.15  Score=47.57  Aligned_cols=27  Identities=30%  Similarity=0.732  Sum_probs=22.1

Q ss_pred             CCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         36 YCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +|.| |+|..       ...|.|..||+|..|+..
T Consensus       398 ~C~n-G~C~~-------~~~C~C~~G~~G~~C~~~  424 (463)
T 2wg3_C          398 LCRN-GYCTP-------TGKCCCSPGWEGDFCRTA  424 (463)
T ss_dssp             HCCS-EEECT-------TSCEEECTTEESTTSCEE
T ss_pred             CCCC-CccCC-------CCeECCCCCcCCCcCCcC
Confidence            6888 79963       258999999999999854

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=87.35  E-value=0.33  Score=37.74  Aligned_cols=28  Identities=21%  Similarity=0.419  Sum_probs=22.7

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRC   67 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rC   67 (229)
                      +||.| |+|.+..    ++|.|.|+.||.|..+
T Consensus        10 ~pC~n-g~C~n~~----g~y~C~C~~G~~g~~~   37 (147)
T 2w86_A           10 SPCIN-GVCKNSP----GSFICECSSESTLDPT   37 (147)
T ss_dssp             CCSBT-SEEEEET----TEEEEECCTTEEECTT
T ss_pred             CCCCC-CEeECCC----CCEEeECCCCcccCCC
Confidence            68987 5998874    3799999999998654

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=86.84  E-value=0.29  Score=34.56  Aligned_cols=34  Identities=18%  Similarity=0.311  Sum_probs=16.6

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHh-hhhhhhcc
Q psy12432         90 IASGASIAVFLVVILCFSLYVHCQRR-KKQAQAAS  123 (229)
Q Consensus        90 Ia~gI~V~lLLVlii~vvly~~~kRr-k~~k~~~~  123 (229)
                      |++|.++++|++..++++.++++++| |...++++
T Consensus        12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMSQ   46 (70)
T 2klu_A           12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMSQ   46 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSSH
T ss_pred             HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45555555555555555445544433 33345543

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=86.28  E-value=0.33  Score=34.53  Aligned_cols=30  Identities=27%  Similarity=0.669  Sum_probs=23.5

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCC-----CCCCcc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYM-----GQRCEF   69 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~-----G~rCe~   69 (229)
                      .+|.|| +|.+..    ..|.|.|+.||.     |..|+.
T Consensus        11 ~~C~~g-~C~n~~----g~y~C~C~~Gy~~~~~~g~~C~d   45 (86)
T 1lmj_A           11 DLCGRG-QCVNTP----GDFECKCDEGYESGFMMMKNCMD   45 (86)
T ss_dssp             STTTTS-CEEEET----TEEEECCCSSEEECTTTSSSEEE
T ss_pred             CCCCCC-EEECCC----CCEEeeCCCCcCccCCCCCccCC
Confidence            459775 999874    379999999998     677764

>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A

Probab=86.01  E-value=1.2  Score=27.72  Aligned_cols=26  Identities=12%  Similarity=0.299  Sum_probs=12.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12432         93 GASIAVFLVVILCFSLYVHCQRRKKQ  118 (229)
Q Consensus        93 gI~V~lLLVlii~vvly~~~kRrk~~  118 (229)
                      ++++++++.+++-.++|..++|.+++
T Consensus        10 alivalIiaIVVWtiv~ieYrk~~kQ   35 (36)
T 1pi7_A           10 ALVVAIIIAIVVWSIVIIEGRGGKKK   35 (36)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444444444444455556655554

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=85.67  E-value=0.15  Score=36.54  Aligned_cols=28  Identities=36%  Similarity=0.956  Sum_probs=22.8

Q ss_pred             CCCCCCEEEeeccCCCCceEeecCCCCC----CCCCc
Q psy12432         36 YCLNGATCFTVKIGESLLYNCECADGYM----GQRCE   68 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC~C~~Gy~----G~rCe   68 (229)
                      .| ++++|.+..    ..|.|.|+.||.    |..|+
T Consensus        12 ~C-~~~~C~n~~----g~y~C~C~~G~~~~~~g~~C~   43 (87)
T 1z6c_A           12 IC-GTAVCKNIP----GDFECECPEGYRYNLKSKSCE   43 (87)
T ss_dssp             SB-TTSSCCCBT----TBCCCSSSTTCEEETTTTEEE
T ss_pred             CC-CCCEeECCC----CCEEEECCCCceECCCCCcCC
Confidence            38 888998764    379999999999    77786

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=84.80  E-value=0.11  Score=41.92  Aligned_cols=17  Identities=24%  Similarity=0.600  Sum_probs=15.2

Q ss_pred             ceEeecCCCCCCCCCcc
Q psy12432         53 LYNCECADGYMGQRCEF   69 (229)
Q Consensus        53 ~~sC~C~~Gy~G~rCe~   69 (229)
                      ...|.|..+|+|.+|+.
T Consensus       130 tG~C~C~~g~~G~~Cd~  146 (162)
T 1klo_A          130 TGQCQCLPHVSGRDCGT  146 (162)
T ss_dssp             TCCCCBCTTEESTTCCE
T ss_pred             CCEeECCCCCcCCCCCC
Confidence            46899999999999986

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=84.51  E-value=1.1  Score=29.03  Aligned_cols=29  Identities=17%  Similarity=0.234  Sum_probs=22.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy12432         91 ASGASIAVFLVVILCFSLYVHCQRRKKQAQ  120 (229)
Q Consensus        91 a~gI~V~lLLVlii~vvly~~~kRrk~~k~  120 (229)
                      +++++|+ +++++++.+....+.|||++++
T Consensus        14 Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~   42 (44)
T 2jwa_A           14 IISAVVG-ILLVVVLGVVFGILIKRRQQKI   42 (44)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred             hHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence            3344555 8888888889999999998874

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=84.49  E-value=1.1  Score=28.00  Aligned_cols=13  Identities=8%  Similarity=0.118  Sum_probs=5.5

Q ss_pred             HHHHhhhHHHHHH
Q psy12432         87 TASIASGASIAVF   99 (229)
Q Consensus        87 ~~~Ia~gI~V~lL   99 (229)
                      .++|++|++++++
T Consensus        13 IAGiVvG~v~gv~   25 (38)
T 2k1k_A           13 IVAVIFGLLLGAA   25 (38)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             eeeeehHHHHHHH
Confidence            3444444444433

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=84.19  E-value=0.46  Score=40.25  Aligned_cols=27  Identities=30%  Similarity=0.867  Sum_probs=20.9

Q ss_pred             CCCCC--CEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         36 YCLNG--ATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        36 pClNG--GtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +|.++  |+|..        ..|.|..||+|..|+..
T Consensus       187 ~C~~~~~G~C~~--------g~C~C~~G~~G~~C~~~  215 (217)
T 2p28_B          187 VCGGPGRGLCFC--------GKCRCHPGFEGSACQHH  215 (217)
T ss_dssp             ETTCTTTEEEET--------TEEEECTTEESTTSCEE
T ss_pred             CCCCCCCcEEeC--------CeeECCCCCccCCcCCC
Confidence            35555  78862        48999999999999864

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=83.55  E-value=0.3  Score=41.46  Aligned_cols=27  Identities=30%  Similarity=0.669  Sum_probs=20.2

Q ss_pred             CCCCCCEEEeeccCCCCceEeecCCC------CCCCCCccc
Q psy12432         36 YCLNGATCFTVKIGESLLYNCECADG------YMGQRCEFK   70 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC~C~~G------y~G~rCe~~   70 (229)
                      +|.|+|+|..        ..|.|..|      |+|..|+..
T Consensus       144 ~Csg~G~C~~--------g~C~C~~gw~~~~~~~G~~Ce~~  176 (217)
T 2p28_B          144 ICSGLGDCVC--------GQCLCHTSDVPGKLIYGQYCECD  176 (217)
T ss_dssp             BGGGTEEEET--------TEEEECCCCSTTCCEESTTSCEE
T ss_pred             CCCCCCEEeC--------CceECCCCCCCcccEECCCcccC
Confidence            4556677752        47999999      699999853

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=82.94  E-value=0.72  Score=36.34  Aligned_cols=31  Identities=19%  Similarity=0.544  Sum_probs=25.4

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCC----CCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYM----GQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~----G~rCe~~   70 (229)
                      ++|. +|+|.+..    .+|.|.|+.||.    |..|+..
T Consensus        10 ~~C~-~~~C~n~~----gsy~C~C~~Gy~~~~~g~~C~d~   44 (162)
T 1uzk_A           10 TTCI-SGNCVNTP----GSYICDCPPDFELNPTRVGCVDT   44 (162)
T ss_dssp             TSSB-TSEEEEET----TEEEEECCTTCEECTTSSBEECC
T ss_pred             CCCC-CCEeECCC----CCEEEeCCCCCeECCCCCcccCC
Confidence            7897 58999874    379999999998    8888843

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=81.50  E-value=0.77  Score=41.24  Aligned_cols=31  Identities=32%  Similarity=0.631  Sum_probs=25.0

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCC---CCCCcc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYM---GQRCEF   69 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~---G~rCe~   69 (229)
                      ++|.++++|.+..    .+|.|.|+.||.   |..|+.
T Consensus         6 ~~~~c~~~C~~~~----~~y~C~C~~G~~~~~~~~C~d   39 (400)
T 3p5b_L            6 NNGGCSHVCNDLK----IGYECLCPDGFQLVAQRRCED   39 (400)
T ss_dssp             TGGGCSSEEEECS----SSEEEECCTTEEECSSSCEEE
T ss_pred             CCCCCCCEeECCC----CCeEEECCCCCCcCCCCcccC
Confidence            5777788999864    379999999998   777764

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=81.11  E-value=5.2  Score=28.70  Aligned_cols=14  Identities=7%  Similarity=-0.007  Sum_probs=6.8

Q ss_pred             HHHHhhhHHHHHHH
Q psy12432         87 TASIASGASIAVFL  100 (229)
Q Consensus        87 ~~~Ia~gI~V~lLL  100 (229)
                      ..++++||+++-|+
T Consensus        14 v~gvi~gilliGll   27 (79)
T 2knc_B           14 LLSVMGAILLIGLA   27 (79)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44555555444333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=80.98  E-value=0.79  Score=29.71  Aligned_cols=32  Identities=16%  Similarity=0.077  Sum_probs=19.1

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12432         87 TASIASGASIAVFLVVILCFSLYVHCQRRKKQ  118 (229)
Q Consensus        87 ~~~Ia~gI~V~lLLVlii~vvly~~~kRrk~~  118 (229)
                      .++-++|-++++++++++.++++-++++++|+
T Consensus        12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr   43 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR   43 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred             EEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            44444444444445557777778888777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	3e-11
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	1e-10
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	8e-10
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	8e-09
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	3e-06
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	7e-05
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	9e-05
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	1e-04
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-04
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	1e-04
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	1e-04
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	2e-04
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	3e-04
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	6e-04
d1xdtr_	41	g.3.11.1 (R:) Heparin-binding epidermal growth fac	7e-04
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	0.002
d2i9aa1	40	g.3.11.1 (A:10-49) Plasminogen activator (urokinas	0.004

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 3e-11
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
          H   CP ++ T +C +G   F   + +     C C  GY+G RCE  DL
Sbjct: 3  HFNDCPDSH-TQFCFHGTCRF---LVQEDKPACVCHSGYVGARCEHADL 47

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 1e-10
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 24 HTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
          H   CP  Y   YC+ G   F V        +C C +GY+G RCE  DL
Sbjct: 4  HFSRCPKQY-KHYCIKGRCRFVVAEQT---PSCVCDEGYIGARCERVDL 48

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (122), Expect = 8e-10
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
          CP +Y   YCLNG  C  ++  +S  Y C C  GY G RC+ +DL 
Sbjct: 6  CPSSY-DGYCLNGGVCMHIESLDS--YTCNCVIGYSGDRCQTRDLR 48

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 8e-09
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD 73
          CP ++   YCL+   C  ++  +   Y C C  GY+G+RC+++DL 
Sbjct: 4  CPLSH-DGYCLHDGVCMYIEALDK--YACNCVVGYIGERCQYRDLK 46

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 3e-06
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL 72
          C       YCL+G   + V + +     C C  GY G RCE   L
Sbjct: 6  CSSDMNG-YCLHGQCIYLVDMSQ---NYCRCEVGYTGVRCEHFFL 46

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.0 bits (86), Expect = 7e-05
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          C NG +C          Y C C   + G+ CE
Sbjct: 10 CQNGGSCKDQLQS----YICFCLPAFEGRNCE 37

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 9e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 33 ATWYCLNGATCFTVKIGESL-LYNCECADGYMGQRCEFKDLDGSYLPSRKQ 82
             +C+NG  CF VK   +   Y C+C  G+ G RC            + +
Sbjct: 10 EKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKAE 60

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          C N   C          Y C C +G+ G+ CE
Sbjct: 8  CQNQGKCKDGLGE----YTCTCLEGFEGKNCE 35

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          C +   C    +G    + C+C  GY G RCE
Sbjct: 13 CEHAGKC-INTLGS---FECQCLQGYTGPRCE 40

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          C N ATC   +IGE   + C C  GY G  CE
Sbjct: 9  CQNDATC-LDQIGE---FQCICMPGYEGVHCE 36

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 1e-04
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          CLNG +C          Y C C  G+ G+ CE
Sbjct: 11 CLNGGSCKDDINS----YECWCPFGFEGKNCE 38

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          CL+   C          + CEC  G+ G  C+
Sbjct: 8  CLHNGRCLDKINE----FQCECPTGFTGHLCQ 35

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 3e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          C NG TC          + C+C +G+ G+ CE
Sbjct: 6  CFNGGTCQQALYFSD--FVCQCPEGFAGKSCE 35

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 4/33 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
          C     C          Y C C  G+ G  CE+
Sbjct: 9  CSKQGECLETIGN----YTCSCYPGFYGPECEY 37

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 7e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 28 CPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
          C   Y   +C++G   +  ++      +C C  GY G+RC  
Sbjct: 2  CLRKYKD-FCIHGECKYVKELRA---PSCICHPGYHGERCHG 39

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCEF 69
          C     C          Y C+C  G+ G +CE 
Sbjct: 9  CSGHGECVETINN----YTCKCDPGFSGLKCEQ 37

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (73), Expect = 0.004
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 37 CLNGATCFTVKIGESLLYNCECADGYMGQRCE 68
          CLNG TC + K   S ++ C C   + GQ CE
Sbjct: 4  CLNGGTCVSNKYF-SNIHWCNCPKKFGGQHCE 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	98.93
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.86
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	98.86
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.81
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	98.57
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	98.48
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.47
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.44
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.31
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.28
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.27
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.24
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.23
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.21
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.18
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.12
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.05
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.02
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	97.62
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	97.33
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	90.7
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	90.1
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	89.35
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	86.56
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	86.32
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	86.2
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	84.91
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	83.54
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	83.42
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	83.2
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	82.91
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	82.44
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	82.38
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	81.84
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	81.51
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	81.07
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	80.78
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	80.53

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.6e-10  Score=75.59  Aligned_cols=47  Identities=40%  Similarity=0.872  Sum_probs=40.8

Q ss_pred             CCceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCC
Q psy12432         22 TFHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL   72 (229)
Q Consensus        22 ~gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~   72 (229)
                      +||+-+|++.|. +||+|||+|+...   ...+.|+|+.||+|+|||+.++
T Consensus         2 ~gh~~pC~~~~~-~yC~nGgcc~~~~---~~~~~C~C~~gy~G~rCe~~~l   48 (50)
T d1ioxa_           2 KGHFSRCPKQYK-HYCIKGRCRFVVA---EQTPSCVCDEGYIGARCERVDL   48 (50)
T ss_dssp             CCCCEECCGGGT-TSCTTCCEEEETT---TTEEEECCCTTEETTTTCEECC
T ss_pred             CCccCccCcccC-CCccCCeEEEeCC---CCCcEeECCCCCeeCCCcccee
Confidence            589999999995 8999999998754   2379999999999999999864

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=8.1e-10  Score=72.45  Aligned_cols=44  Identities=36%  Similarity=0.982  Sum_probs=37.1

Q ss_pred             eCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCC
Q psy12432         27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLD   73 (229)
Q Consensus        27 ~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~   73 (229)
                      .|++.|. +||+|||+|+.+...  ..|+|.|+.+|+|.+||.++++
T Consensus         3 ~C~~c~~-~~C~ngG~C~~~~~~--~~~~C~C~~gy~G~~Ce~~dl~   46 (48)
T d1nqlb_           3 ECPLSHD-GYCLHDGVCMYIEAL--DKYACNCVVGYIGERCQYRDLK   46 (48)
T ss_dssp             ECCSTTC-CEECTTCEEEEETTT--TEEEEEECTTEESTTSCEECSS
T ss_pred             cCCCCCC-CCCCCCcEEeeeCCC--CCeEEeCCCCcccCCCCcCccc
Confidence            5778774 899999999986532  3799999999999999998765

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7.5e-10  Score=73.00  Aligned_cols=46  Identities=37%  Similarity=0.809  Sum_probs=39.3

Q ss_pred             CceeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCC
Q psy12432         23 FHTYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDL   72 (229)
Q Consensus        23 gy~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~   72 (229)
                      .|+-+|++.|. +||+|||.|+...   ...++|+|+.||+|+|||..++
T Consensus         2 sH~~pC~~~~~-~yClnGgcc~~~~---~~~~~C~C~~gy~G~RCe~~~L   47 (49)
T d1moxc_           2 SHFNDCPDSHT-QFCFHGTCRFLVQ---EDKPACVCHSGYVGARCEHADL   47 (49)
T ss_dssp             CSEECCCCCSS-CSSTTEEEEEETT---TTEEEEEECTTEESTTSCEECS
T ss_pred             CccCccCcccC-CEeeCCeEEecCC---CCCcEeECCCCCEecCCccccc
Confidence            47889999995 8999999988654   2379999999999999999864

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=3.5e-09  Score=70.68  Aligned_cols=47  Identities=40%  Similarity=0.927  Sum_probs=38.4

Q ss_pred             eeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccCCCC
Q psy12432         25 TYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKDLDG   74 (229)
Q Consensus        25 ~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~~~~   74 (229)
                      +..|++.+. +||+|||+|+.....  ..|+|.|+.||+|.+||..++.+
T Consensus         3 ~~~C~~c~~-~~C~NgG~C~~~~~~--~~~~C~C~~gy~G~~Ce~~~l~~   49 (53)
T d3egfa_           3 YPGCPSSYD-GYCLNGGVCMHIESL--DSYTCNCVIGYSGDRCQTRDLRW   49 (53)
T ss_dssp             ECCCCTTSS-CCSCSSCEEEEESSS--SCEEEECCTTCCSSSSCCCSCCC
T ss_pred             CCCCCCCCC-CCCCCCcEeeccCCC--CCeEeECCCCCcCCCCccCCccc
Confidence            356777774 799999999976532  37999999999999999987654

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.3e-08  Score=64.08  Aligned_cols=43  Identities=30%  Similarity=0.622  Sum_probs=34.0

Q ss_pred             eeeCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         25 TYACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        25 ~C~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      +-+|++.|+ +||+| |.|.....  ...+.|+|+.||+|+|||+..
T Consensus         3 i~~C~~~~~-~yC~n-G~C~~~~~--~~~~~C~C~~gY~G~RCe~~~   45 (46)
T d1k36a_           3 ITKCSSDMN-GYCLH-GQCIYLVD--MSQNYCRCEVGYTGVRCEHFF   45 (46)
T ss_dssp             EECCCTTCC-SSCSS-EEEEEETT--TTEEEEEECTTCSSTTSCCCC
T ss_pred             eeeCCCcCC-CcCcC-CEEEEeCC--CCccEeECCCCceecCceeee
Confidence            357999985 89999 55665542  237999999999999999864

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.3e-08  Score=63.32  Aligned_cols=40  Identities=33%  Similarity=0.680  Sum_probs=34.1

Q ss_pred             eCCCCCCCCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         27 ACPPTYATWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        27 ~C~~gy~gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +|++.|+ +||+| |+|+.+...  ..+.|+|..||+|+||+..
T Consensus         1 PC~~~~~-~yCih-G~C~~i~~l--~~~~C~C~~gY~G~RCq~~   40 (41)
T d1xdtr_           1 PCLRKYK-DFCIH-GECKYVKEL--RAPSCICHPGYHGERCHGL   40 (41)
T ss_dssp             CTTTTTT-TCCSS-EEECCBGGG--TBCCEEECTTEESTTCCEE
T ss_pred             CCCcccC-CEeEC-cEEeecCcC--CCceeECCCCCeecCcccC
Confidence            5889885 89999 999987643  3799999999999999964

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.6e-08  Score=68.30  Aligned_cols=49  Identities=33%  Similarity=0.685  Sum_probs=38.5

Q ss_pred             ceeeCCCCCCCCCCCCCCEEEeeccCC-CCceEeecCCCCCCCCCcccCCC
Q psy12432         24 HTYACPPTYATWYCLNGATCFTVKIGE-SLLYNCECADGYMGQRCEFKDLD   73 (229)
Q Consensus        24 y~C~C~~gy~gnpClNGGtC~~~~~~~-~~~~sC~C~~Gy~G~rCe~~~~~   73 (229)
                      |+-.|.+.+ .+||+|||+|..+...+ ...|.|.|+.||+|.+||.....
T Consensus         2 h~~~c~ec~-~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~   51 (63)
T d1haea_           2 HLVKCAEKE-KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM   51 (63)
T ss_dssp             EEEECCHHH-HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCS
T ss_pred             CcccCCCCc-CCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCc
Confidence            566788876 48999999998654211 34799999999999999987643

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.2e-07  Score=59.88  Aligned_cols=36  Identities=31%  Similarity=0.772  Sum_probs=30.4

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      .+||+|||+|.....  ...|.|.|+.||.|.+||...
T Consensus         3 ~nPC~ngG~C~~~~~--~~~y~C~C~~g~~G~~Ce~~~   38 (41)
T d1tpga1           3 EPRCFNGGTCQQALY--FSDFVCQCPEGFAGKSCEIDT   38 (41)
T ss_dssp             SCCSCTTCEEEEESS--SSCEEEECCTTCBSSSCCBCS
T ss_pred             CCCCCCCCEEecCCC--CCCeEECCCCCCCCCCcCcCc
Confidence            389999999998642  237999999999999999874

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.2e-07  Score=56.65  Aligned_cols=31  Identities=29%  Similarity=0.849  Sum_probs=27.4

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE   68 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe   68 (229)
                      .+||+|||+|....    +.|+|.|+.||.|.+||
T Consensus         5 ~~PC~ngg~C~~~~----~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           5 SSPCLHNGRCLDKI----NEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             TCCSTTTCEEEECS----SCEEEECCTTEESSSSC
T ss_pred             CCCCCCCcEEECCC----CCeEEECCCCCCCCCcC
Confidence            38999999998753    37999999999999997

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.7e-07  Score=57.61  Aligned_cols=32  Identities=38%  Similarity=0.766  Sum_probs=28.5

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +||+|||+|.+..    ..|.|.|+.||.|.+||..
T Consensus         7 ~PC~n~g~C~~~~----~~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           7 NPCQNDATCLDQI----GEFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CCCCSSCEEEECS----SCEEEECCTTEESSSSCEE
T ss_pred             CCCCCCCEEECCC----CCEEEeCCCCCccCcCeeC
Confidence            8999999999763    3799999999999999964

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4e-07  Score=56.75  Aligned_cols=32  Identities=38%  Similarity=0.825  Sum_probs=28.1

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      .+||.|||+|....    +.|+|.|+.||.|.+||.
T Consensus         8 ~~PC~ngg~C~~~~----~~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           8 SNPCLNGGSCKDDI----NSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             TCCCCTTCEEEEET----TEEEEECCTTCCSTTSCC
T ss_pred             CCCCCCCcEEEcCC----CCEEEECCCCCCCCCCCC
Confidence            38999999999863    379999999999999983

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.2e-07  Score=58.00  Aligned_cols=32  Identities=28%  Similarity=0.695  Sum_probs=28.7

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      +||.|||+|....    +.|.|.|+.||.|.+||..
T Consensus         7 ~pC~ngg~C~~~~----~~~~C~C~~g~~G~~Ce~~   38 (39)
T d1g1ta2           7 TSCSGHGECVETI----NNYTCKCDPGFSGLKCEQI   38 (39)
T ss_dssp             TGGGGSEEEEEET----TEEEEEECTTEESTTSCEE
T ss_pred             CcCCCCcEEECCC----CCEEEeCCCCCcCcCcCcc
Confidence            8999999999863    3799999999999999975

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.23  E-value=3.5e-07  Score=56.40  Aligned_cols=31  Identities=32%  Similarity=0.727  Sum_probs=27.6

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCE   68 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe   68 (229)
                      .+||+|||+|....    ..|.|.|+.||+|.+||
T Consensus         7 ~~PC~ngg~C~~~~----~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           7 SSPCQNGGSCKDQL----QSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             GCCCCTTCEEEEET----TEEEEECCTTEESTTSC
T ss_pred             CCCCCCCCEEECCC----CCeEEECCCCCcCCCCC
Confidence            38999999999863    37999999999999997

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.8e-07  Score=57.82  Aligned_cols=33  Identities=27%  Similarity=0.768  Sum_probs=29.0

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      .+||+|||+|....    +.|.|.|+.||.|.+||..
T Consensus         6 ~~pC~ngg~C~~~~----~~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           6 DMSCSKQGECLETI----GNYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             TTGGGGSEEEEECS----SSEEEEECTTEESTTSCEE
T ss_pred             CCcCCCCcEEECCC----CCeEEeCCCCccCCCCCCC
Confidence            38999999998763    3799999999999999975

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.2e-07  Score=57.25  Aligned_cols=33  Identities=33%  Similarity=0.703  Sum_probs=28.9

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCccc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFK   70 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~   70 (229)
                      .+||+|||+|....    ..|.|.|+.||+|.+||..
T Consensus         5 ~~PC~ngg~C~~~~----~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           5 TSPCQNQGKCKDGL----GEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             TCCCCSSCEECCCS----SSCCEECCTTEETTTTCEE
T ss_pred             CCCCCCCcEEECCC----CCEEEECCCCCCcCcCeEc
Confidence            38999999998753    3799999999999999965

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=9e-07  Score=55.80  Aligned_cols=32  Identities=31%  Similarity=0.840  Sum_probs=28.4

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEF   69 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~   69 (229)
                      .+||.|||+|.+..    ..|.|.|+.||+|.+||.
T Consensus        10 ~~pC~n~g~C~n~~----g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1          10 ANPCEHAGKCINTL----GSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             SCSSSTTCEEEECS----SSEEEECCTTEESTTSCE
T ss_pred             CCCCCCCcEeECCC----CCEEeECCCCCcCCCCcC
Confidence            37999999999864    379999999999999985

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.05  E-value=1.3e-06  Score=55.15  Aligned_cols=32  Identities=28%  Similarity=0.830  Sum_probs=27.3

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCC-CCCCCCCcc
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECAD-GYMGQRCEF   69 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~-Gy~G~rCe~   69 (229)
                      +||+|||+|....   ...|.|.|+. ||.|.+||.
T Consensus         8 nPC~ngG~C~~~~---~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           8 YPCQHQGICVRFG---LDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCCCTTCEEEEET---TTEEEEECTTSSEETTTTCE
T ss_pred             CCCCCCCEeeeCC---CCCEEEECCCCCcCCcCcCc
Confidence            8999999998753   2379999986 899999986

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=1.8e-06  Score=54.24  Aligned_cols=34  Identities=26%  Similarity=0.751  Sum_probs=27.9

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecC-CCCCCCCCccc
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECA-DGYMGQRCEFK   70 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~-~Gy~G~rCe~~   70 (229)
                      .+||+|||+|+...   ...|.|.|+ .||.|.+||.-
T Consensus         6 ~~PC~ngG~C~~~~---~~~y~C~C~~~gy~G~~Ce~p   40 (41)
T d1cvua2           6 SNPCQNRGECMSTG---FDQYKCDCTRTGFYGENCTTP   40 (41)
T ss_dssp             TCCCCTTCEEEEEE---TTEEEEECTTSSEETTTTCEE
T ss_pred             CCCCCCCCEEEECC---CCCEEEeCcCCCcCCcCcCcC
Confidence            38999999998753   136999997 59999999863

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.7e-06  Score=52.76  Aligned_cols=33  Identities=24%  Similarity=0.664  Sum_probs=28.1

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      .+||.| |+|....    +.|.|.|+.||.|.+||...
T Consensus        13 ~~PC~n-G~C~~~~----~~y~C~C~~G~~G~~Ce~~I   45 (48)
T d1autl1          13 SLCCGH-GTCIDGI----GSFSCDCRSGWEGRFCQREV   45 (48)
T ss_dssp             STTTTS-EEECCCS----SCCCEEECTTEESTTSCEEC
T ss_pred             CCCCCC-CEEECCC----CCCeEeCCCCCcCCCccccc
Confidence            389999 7998753    37999999999999999875

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=8.3e-05  Score=45.44  Aligned_cols=35  Identities=40%  Similarity=0.787  Sum_probs=28.1

Q ss_pred             CCCCCCEEEeeccCCCCceEeecCCCCCCCCCcccC
Q psy12432         36 YCLNGATCFTVKIGESLLYNCECADGYMGQRCEFKD   71 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC~C~~Gy~G~rCe~~~   71 (229)
                      -|+|||+|....-- .+...|.|+.+|.|++||...
T Consensus         3 ~ClNGG~Cvsyk~F-S~I~rC~CPk~f~G~HCEiDt   37 (40)
T d2i9aa1           3 DCLNGGTCVSNKYF-SNIHWCNCPKKFGGQHCEIDK   37 (40)
T ss_dssp             CCCTTCEEEECSSS-TTCEEEECCTTEESTTSCEES
T ss_pred             ccccCCEEEEEehh-cCCEEecCCcccCceeEEecc
Confidence            48999999875421 236899999999999999764

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.70  E-value=0.074  Score=34.20  Aligned_cols=34  Identities=35%  Similarity=0.763  Sum_probs=24.2

Q ss_pred             CCCCCCEEEeeccCCCCceEe-ecCCCCCCCCCcccC
Q psy12432         36 YCLNGATCFTVKIGESLLYNC-ECADGYMGQRCEFKD   71 (229)
Q Consensus        36 pClNGGtC~~~~~~~~~~~sC-~C~~Gy~G~rCe~~~   71 (229)
                      +|.|++.|.....  .....| .|..+|.|.+||.=.
T Consensus         2 pC~~~~~c~~~~~--~~~~vC~~C~~~~~G~~Ce~C~   36 (55)
T d1kloa1           2 PCPGGSSCAIVPK--TKEVVCTHCPTGTAGKRCELCD   36 (55)
T ss_dssp             CSCTTCCEEECSS--SCCEEECSCCTTEESTTSCEEC
T ss_pred             cCcCCCccceeCC--CCCEEcCCCCCCCccCcccccC
Confidence            4556677766532  235778 699999999999853

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.10  E-value=0.1  Score=31.08  Aligned_cols=26  Identities=31%  Similarity=0.603  Sum_probs=20.7

Q ss_pred             CCCCCCCCEEEeeccCCCCceEeecCCCCCC
Q psy12432         34 TWYCLNGATCFTVKIGESLLYNCECADGYMG   64 (229)
Q Consensus        34 gnpClNGGtC~~~~~~~~~~~sC~C~~Gy~G   64 (229)
                      ||+|-| |+|.+..    .+|.|.|..||..
T Consensus         7 gnpCGn-GTCtNvi----GgFec~C~~GFep   32 (39)
T d1emoa2           7 GNPCGN-GTCKNVI----GGFECTCEEGFEP   32 (39)
T ss_dssp             TCSSSS-SCEEECS----SSEEECCSSSSCC
T ss_pred             CCccCC-ceeeecc----cceEEeecCCcCC
Confidence            589976 5899874    3699999999853

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.35  E-value=0.083  Score=32.02  Aligned_cols=27  Identities=26%  Similarity=0.594  Sum_probs=22.3

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQ   65 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~   65 (229)
                      ..|....+|.+..    .+|.|.|..||.|.
T Consensus         7 ~~C~~~A~C~Nt~----Gsy~C~C~~Gy~Gd   33 (40)
T d1gl4a2           7 HQCSVHAECRDYA----TGFCCRCVANYTGN   33 (40)
T ss_dssp             GGSCTTEEEEECS----SCEEEEECTTEEEC
T ss_pred             CCCCCCCEeecCC----CCeEeECCCCCcCC
Confidence            4677789999874    37999999999875

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=0.18  Score=30.41  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=17.4

Q ss_pred             CCCCCceeeCCCCCCCCCCCC
Q psy12432         19 PNITFHTYACPPTYATWYCLN   39 (229)
Q Consensus        19 ~~~~gy~C~C~~gy~gnpClN   39 (229)
                      .++.+|.|.|++||.|..|..
T Consensus        16 ~~~~~y~C~C~~g~~G~~Ce~   36 (41)
T d1tpga1          16 LYFSDFVCQCPEGFAGKSCEI   36 (41)
T ss_dssp             SSSSCEEEECCTTCBSSSCCB
T ss_pred             CCCCCeEECCCCCCCCCCcCc
Confidence            345689999999999988864

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.32  E-value=0.18  Score=30.97  Aligned_cols=26  Identities=23%  Similarity=0.644  Sum_probs=20.7

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQ   65 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~   65 (229)
                      ..|.+ ++|.+..    ++|.|.|+.||.+.
T Consensus        11 ~~C~~-~~C~Nt~----Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1          11 DLCGR-GQCVNTP----GDFECKCDEGYESG   36 (44)
T ss_dssp             STTTT-SCEEEET----TEEEECCCSSEEEC
T ss_pred             CCCCC-CEeEcCC----CCeEEeCCCCCccC
Confidence            46765 6899985    37999999999775

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.20  E-value=0.12  Score=30.98  Aligned_cols=23  Identities=13%  Similarity=0.190  Sum_probs=19.4

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCL   38 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpCl   38 (229)
                      +....+.+|.|.|++||.|..|.
T Consensus        13 ~C~~~~~~y~C~C~~G~~G~~Ce   35 (39)
T d1xkba1          13 KCKDGLGEYTCTCLEGFEGKNCE   35 (39)
T ss_dssp             EECCCSSSCCEECCTTEETTTTC
T ss_pred             EEECCCCCEEEECCCCCCcCcCe
Confidence            45667788999999999988885

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=0.53  Score=28.29  Aligned_cols=26  Identities=31%  Similarity=0.715  Sum_probs=20.1

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQ   65 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~   65 (229)
                      ..|. +|.|.+..    ++|.|.|+.||...
T Consensus        10 ~~C~-~~~C~Nt~----Gsy~C~C~~Gy~l~   35 (42)
T d1lmja2          10 LLCR-GGVCHNTE----GSYRCECPPGHQLS   35 (42)
T ss_dssp             STTT-TSEEEEET----TEEEEESCTTSCCC
T ss_pred             CCCC-CCEeECCC----CCeEEeCCCCCeEC
Confidence            4565 46999985    37999999999743

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=0.2  Score=30.26  Aligned_cols=23  Identities=13%  Similarity=0.137  Sum_probs=18.3

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCL   38 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpCl   38 (229)
                      +....+.+|.|.|++||.|..|.
T Consensus        18 ~C~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1          18 KCINTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             EEEECSSSEEEECCTTEESTTSC
T ss_pred             EeECCCCCEEeECCCCCcCCCCc
Confidence            44556678999999999988775

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.42  E-value=0.13  Score=30.85  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=18.3

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCL   38 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpCl   38 (229)
                      +.+..+.+|.|.|++||.|..|.
T Consensus        16 ~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_          16 SCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             EEEEETTEEEEECCTTCCSTTSC
T ss_pred             EEEcCCCCEEEECCCCCCCCCCC
Confidence            44556678999999999988774

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.20  E-value=0.35  Score=30.19  Aligned_cols=23  Identities=17%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCL   38 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpCl   38 (229)
                      +....|.+|+|.|++||.|..|.
T Consensus        20 ~C~~~~~~y~C~C~~G~~G~~Ce   42 (48)
T d1autl1          20 TCIDGIGSFSCDCRSGWEGRFCQ   42 (48)
T ss_dssp             EECCCSSCCCEEECTTEESTTSC
T ss_pred             EEECCCCCCeEeCCCCCcCCCcc
Confidence            66778889999999999988886

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.91  E-value=0.11  Score=31.28  Aligned_cols=23  Identities=22%  Similarity=0.190  Sum_probs=18.9

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCL   38 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpCl   38 (229)
                      +....+.+|.|.|++||.|..|.
T Consensus        14 ~C~~~~~~y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2          14 ECLETIGNYTCSCYPGFYGPECE   36 (40)
T ss_dssp             EEEECSSSEEEEECTTEESTTSC
T ss_pred             EEECCCCCeEEeCCCCccCCCCC
Confidence            34556778999999999998886

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.44  E-value=0.18  Score=29.77  Aligned_cols=23  Identities=13%  Similarity=0.329  Sum_probs=18.1

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCL   38 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpCl   38 (229)
                      +....+.+|.|.|++||.|..|.
T Consensus        15 ~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1          15 SCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             EEEEETTEEEEECCTTEESTTSC
T ss_pred             EEECCCCCeEEECCCCCcCCCCC
Confidence            34456678999999999987773

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.38  E-value=0.5  Score=28.57  Aligned_cols=26  Identities=23%  Similarity=0.642  Sum_probs=19.8

Q ss_pred             CCCCCCCEEEeeccCCCCceEeecCCCCCCC
Q psy12432         35 WYCLNGATCFTVKIGESLLYNCECADGYMGQ   65 (229)
Q Consensus        35 npClNGGtC~~~~~~~~~~~sC~C~~Gy~G~   65 (229)
                      ..|.+ ++|.+..    ++|.|.|+.||...
T Consensus        11 ~~c~~-~~C~Nt~----Gsy~C~C~~Gy~l~   36 (43)
T d1uzka2          11 GLCQG-GKCINTF----GSFQCRCPTGYYLN   36 (43)
T ss_dssp             GGGBT-SEEEECS----SCEEEECCTTCCBC
T ss_pred             CCcCC-CEEECCC----CCeEeECCCCCeEC
Confidence            35655 5899975    37999999999643

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.84  E-value=0.071  Score=32.02  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=19.3

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCLN   39 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpClN   39 (229)
                      +....+.+|.|.|++||.|..|.+
T Consensus        14 ~C~~~~~~~~C~C~~g~~G~~Ce~   37 (39)
T d1g1ta2          14 ECVETINNYTCKCDPGFSGLKCEQ   37 (39)
T ss_dssp             EEEEETTEEEEEECTTEESTTSCE
T ss_pred             EEECCCCCEEEeCCCCCcCcCcCc
Confidence            345567789999999999988863

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.51  E-value=0.42  Score=30.26  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=17.8

Q ss_pred             CCCCCceeeCCCCCCCCCCCC
Q psy12432         19 PNITFHTYACPPTYATWYCLN   39 (229)
Q Consensus        19 ~~~~gy~C~C~~gy~gnpClN   39 (229)
                      ....+|.|.|++||.|..|.+
T Consensus        24 ~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_          24 ESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             SSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCeEeECCCCCcCCCCcc
Confidence            455689999999999999975

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.07  E-value=0.17  Score=29.48  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=18.1

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCL   38 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpCl   38 (229)
                      +....+.+|.|.|++||.|..|.
T Consensus        13 ~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3          13 RCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             EEEECSSCEEEECCTTEESSSSC
T ss_pred             EEECCCCCeEEECCCCCCCCCcC
Confidence            44556778999999999887773

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.78  E-value=0.13  Score=31.47  Aligned_cols=26  Identities=35%  Similarity=0.917  Sum_probs=18.7

Q ss_pred             CCCEEEeeccCCCCceEeecCCCCC--CCCCc
Q psy12432         39 NGATCFTVKIGESLLYNCECADGYM--GQRCE   68 (229)
Q Consensus        39 NGGtC~~~~~~~~~~~sC~C~~Gy~--G~rCe   68 (229)
                      .++.|.+..    ++|.|.|+.||.  |..|+
T Consensus        15 ~~~~C~Nt~----Gsy~C~C~~Gy~~~g~~C~   42 (43)
T d1emoa1          15 KHGQCINTD----GSYRCECPFGYILAGNECV   42 (43)
T ss_dssp             SSSCCCCCS----SCCCCCCCTTEEESSSCEE
T ss_pred             CCCEeECCC----CCeEeECCCCcccCCCccc
Confidence            456788764    379999999996  44453

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.53  E-value=0.18  Score=30.13  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=18.9

Q ss_pred             CcCCCCCCceeeCCCCCCCCCCC
Q psy12432         16 TPRPNITFHTYACPPTYATWYCL   38 (229)
Q Consensus        16 ~~~~~~~gy~C~C~~gy~gnpCl   38 (229)
                      +....+.+|.|.|++||.|..|.
T Consensus        14 ~C~~~~~~y~C~C~~G~~G~~Ce   36 (39)
T d2vj3a2          14 TCLDQIGEFQCICMPGYEGVHCE   36 (39)
T ss_dssp             EEEECSSCEEEECCTTEESSSSC
T ss_pred             EEECCCCCEEEeCCCCCccCcCe
Confidence            45556778999999999988885