Psyllid ID: psy1249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARKSSNAT
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHcccccccccccccccHHHcccccc
Coil and Loop (DISEMBL)
mvspsnhtfdeAQLQIYTLMhrdsyprfiNSTVYKQLAqldsspgdtggnsdsstparkssnat
Flexible Loop (DISEMBL)
mvspsnhtfdEAQLQIYTLMHRDSYPRFINSTVYKQLAQLdsspgdtggnsdsstparkssnat
Low Complexity Region (SEG)
MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARKSSNAT
Disordered region (IsUnstruct)
***********AQLQIYTLMHRDSYPRFINSTVYKQL***************************
Disordered Region (DISOPRED)
***PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK*****************************
Disordered Region (DISEMBL)
********FDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL************************
Disordered Region (DISPRO)
***PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARKSSNAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
Q9QZB1	239	Regulator of G-protein si	yes	N/A	0.578	0.154	0.837	6e-13
O76081	388	Regulator of G-protein si	no	N/A	0.609	0.100	0.794	9e-13
Q9PWA1	218	Regulator of G-protein si	no	N/A	0.578	0.169	0.783	1e-12
Q08DC7	223	Regulator of G-protein si	yes	N/A	0.578	0.165	0.729	2e-10
P49795	217	Regulator of G-protein si	no	N/A	0.578	0.170	0.729	2e-10
O70521	216	Regulator of G-protein si	no	N/A	0.578	0.171	0.729	4e-10
Q9CX84	216	Regulator of G-protein si	no	N/A	0.578	0.171	0.729	4e-10
Q9PWA0	210	Regulator of G-protein si	no	N/A	0.609	0.185	0.615	7e-10
Q9QZB0	210	Regulator of G-protein si	no	N/A	0.609	0.185	0.589	2e-09
Q9UGC6	210	Regulator of G-protein si	no	N/A	0.609	0.185	0.564	5e-09

>sp|Q9QZB1|RGS20_MOUSE Regulator of G-protein signaling 20 OS=Mus musculus GN=Rgs20 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           MV PS H FD+AQLQIYTLMHRDSYPRF+NSTVYK L
Sbjct: 192 MVDPSQHIFDDAQLQIYTLMHRDSYPRFMNSTVYKDL 228

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.
Mus musculus (taxid: 10090)

>sp|O76081|RGS20_HUMAN Regulator of G-protein signaling 20 OS=Homo sapiens GN=RGS20 PE=1 SV=4

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/39 (79%), Positives = 33/39 (84%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           MV PS H FD+AQLQIYTLMHRDSYPRF+NS VYK L Q
Sbjct: 341 MVEPSQHIFDDAQLQIYTLMHRDSYPRFMNSAVYKDLLQ 379

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Homo sapiens (taxid: 9606)

>sp|Q9PWA1|RGS20_CHICK Regulator of G-protein signaling 20 OS=Gallus gallus GN=RGS20 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 33/37 (89%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M+ PS HTFD+AQLQIYTLMHRDSYPRF+NS +YK L
Sbjct: 171 MLEPSQHTFDDAQLQIYTLMHRDSYPRFMNSAIYKDL 207

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Gallus gallus (taxid: 9031)

>sp|Q08DC7|RGS19_BOVIN Regulator of G-protein signaling 19 OS=Bos taurus GN=RGS19 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+ L
Sbjct: 175 MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPAYRAL 211

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to G-alpha subfamily 1 members, with the order G(i)a3 > G(i)a1 > G(o)a >> G(z)a/G(i)a2. Activity on G(z)-alpha is inhibited by phosphorylation and palmitoylation of the G-protein.

Bos taurus (taxid: 9913)

>sp|P49795|RGS19_HUMAN Regulator of G-protein signaling 19 OS=Homo sapiens GN=RGS19 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+ L
Sbjct: 169 MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 205

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to G-alpha subfamily 1 members, with the order G(i)a3 > G(i)a1 > G(o)a >> G(z)a/G(i)a2. Activity on G(z)-alpha is inhibited by phosphorylation and palmitoylation of the G-protein.

Homo sapiens (taxid: 9606)

>sp|O70521|RGS19_RAT Regulator of G-protein signaling 19 OS=Rattus norvegicus GN=Rgs19 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 30/37 (81%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M  PS HTFD+AQLQIYTLMHRDSYPRF+ S  Y+ L
Sbjct: 169 MQEPSPHTFDDAQLQIYTLMHRDSYPRFLTSPTYRSL 205

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to G-alpha subfamily 1 members, predominantly to G(i)-alpha-3. Activity on G(z)-alpha is inhibited by phosphorylation and palmitoylation of the G-protein.

Rattus norvegicus (taxid: 10116)

>sp|Q9CX84|RGS19_MOUSE Regulator of G-protein signaling 19 OS=Mus musculus GN=Rgs19 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 30/37 (81%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M  PS HTFD+AQLQIYTLMHRDSYPRF+ S  Y+ L
Sbjct: 169 MQEPSPHTFDDAQLQIYTLMHRDSYPRFLTSPTYRSL 205

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to G-alpha subfamily 1 members, with the order G(i)a3 > G(i)a1 > G(o)a >> G(z)a/G(i)a2. Activity on G(z)-alpha is inhibited by phosphorylation and palmitoylation of the G-protein.

Mus musculus (taxid: 10090)

>sp|Q9PWA0|RGS17_CHICK Regulator of G-protein signaling 17 OS=Gallus gallus GN=RGS17 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           ++ PS H +++AQLQIYTLMHRDS+PRF+NS +YK L +
Sbjct: 163 LLDPSPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSLVE 201

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Gallus gallus (taxid: 9031)

>sp|Q9QZB0|RGS17_MOUSE Regulator of G-protein signaling 17 OS=Mus musculus GN=Rgs17 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           ++ PS H +++AQLQIYTLMHRDS+PRF+NS +YK   +
Sbjct: 163 LLDPSPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKAFVE 201

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Mus musculus (taxid: 10090)

>sp|Q9UGC6|RGS17_HUMAN Regulator of G-protein signaling 17 OS=Homo sapiens GN=RGS17 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           ++ P+ H +++AQLQIYTLMHRDS+PRF+NS +YK   +
Sbjct: 163 LLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVE 201

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
307209078	317	Regulator of G-protein signaling 20 [Har	1.0	0.201	0.584	7e-14
193631927	270	PREDICTED: regulator of G-protein signal	0.921	0.218	0.65	5e-13
427792251	437	Putative termination of g-protein couple	0.656	0.096	0.761	7e-13
242008180	150	Regulator of G-protein signaling, putati	0.859	0.366	0.564	8e-13
328781812	305	PREDICTED: hypothetical protein LOC72628	0.937	0.196	0.590	1e-12
195436467	273	GK22228 [Drosophila willistoni] gi|19416	0.843	0.197	0.618	1e-12
240998044	181	regulator of G protein signaling 17, 19,	0.656	0.232	0.761	2e-12
170036846	159	conserved hypothetical protein [Culex qu	0.828	0.333	0.641	3e-12
281363605	274	CG5036 [Drosophila melanogaster] gi|1786	0.843	0.197	0.618	3e-12
194880885	273	GG21825 [Drosophila erecta] gi|190657770	0.843	0.197	0.618	3e-12

>gi|307209078|gb|EFN86245.1| Regulator of G-protein signaling 20 [Harpegnathos saltator]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS-SPGDTGGNSDSSTPARK 59
           MV P+ HTFDEAQLQIYTLMHRDSYPRF+NS +Y+++A+L+S SP  + G   SS  ++ 
Sbjct: 253 MVEPTPHTFDEAQLQIYTLMHRDSYPRFVNSEIYRRVARLNSGSPSPSTGQEHSSGKSKG 312

Query: 60  SSNAT 64
              AT
Sbjct: 313 KRGAT 317

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193631927|ref|XP_001951409.1| PREDICTED: regulator of G-protein signaling 17-like [Acyrthosiphon pisum]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTP-ARKSSN 62
           PS+H FDEAQLQIYTLMHRDSYPRFINS+ YK+LA+L++       NS   TP  RK SN
Sbjct: 210 PSSHMFDEAQLQIYTLMHRDSYPRFINSSQYKKLAKLENGATGNAPNSGQQTPTKRKQSN 269

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792251|gb|JAA61577.1| Putative termination of g-protein coupled receptor signaling pathway, partial [Rhipicephalus pulchellus]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 38/42 (90%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 42
           MV P+ HTFDEAQLQIYTLMHRDSYPRF+NS ++++LAQL S
Sbjct: 388 MVEPTPHTFDEAQLQIYTLMHRDSYPRFVNSPLFRKLAQLPS 429

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008180|ref|XP_002424889.1| Regulator of G-protein signaling, putative [Pediculus humanus corporis] gi|212508462|gb|EEB12151.1| Regulator of G-protein signaling, putative [Pediculus humanus corporis]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 7/62 (11%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL-------DSSPGDTGGNSDS 53
           MV+P+ H FDEAQLQIYTLMHRDSYPRF+NS++YK+ AQL        +  G+ GG  +S
Sbjct: 89  MVAPTPHIFDEAQLQIYTLMHRDSYPRFVNSSMYKEQAQLTNGNEQCGTGTGNVGGKDNS 148

Query: 54  ST 55
           + 
Sbjct: 149 AC 150

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781812|ref|XP_001122035.2| PREDICTED: hypothetical protein LOC726284 [Apis mellifera]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARKS 60
           MV P+ HTFDEAQLQIYTLMHRDSYPRF+NS +Y+++A+L  S G+ G      + ARK 
Sbjct: 244 MVQPTPHTFDEAQLQIYTLMHRDSYPRFVNSELYRRVARLGCS-GEAGNQEQGKSKARKG 302

Query: 61  S 61
           +
Sbjct: 303 T 303

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195436467|ref|XP_002066189.1| GK22228 [Drosophila willistoni] gi|194162274|gb|EDW77175.1| GK22228 [Drosophila willistoni]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSST 55
           M+ P+ HTFDEAQ+QIYTLMHRDSYPRF+NS  +K LAQ+  +  + G N+DS T
Sbjct: 220 MIEPTTHTFDEAQIQIYTLMHRDSYPRFLNSQKFKTLAQMQDN-SNAGSNADSPT 273

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240998044|ref|XP_002404702.1| regulator of G protein signaling 17, 19, putative [Ixodes scapularis] gi|215491646|gb|EEC01287.1| regulator of G protein signaling 17, 19, putative [Ixodes scapularis]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 38/42 (90%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS 42
           MV P+ HTFDEAQLQIYTLMHRDSYPRF+NS ++++LAQL S
Sbjct: 132 MVEPTPHTFDEAQLQIYTLMHRDSYPRFVNSPLFRKLAQLPS 173

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036846|ref|XP_001846272.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167879807|gb|EDS43190.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 41/53 (77%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDS 53
           MV P+ HTFDEAQLQIYTLMHRDSYPRFINS+ +K LAQ+      +G  ++S
Sbjct: 104 MVEPTPHTFDEAQLQIYTLMHRDSYPRFINSSQFKTLAQIPDGVSASGSTAES 156

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281363605|ref|NP_611271.3| CG5036 [Drosophila melanogaster] gi|17862594|gb|AAL39774.1| LD40005p [Drosophila melanogaster] gi|272432532|gb|AAF57785.2| CG5036 [Drosophila melanogaster]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSST 55
           M+ P+ HTFDEAQ+QIYTLMHRDSYPRF+NS  +K LAQL  +  + G  +DS T
Sbjct: 221 MIEPTTHTFDEAQIQIYTLMHRDSYPRFLNSQKFKTLAQLQDN-SNAGSKADSPT 274

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194880885|ref|XP_001974583.1| GG21825 [Drosophila erecta] gi|190657770|gb|EDV54983.1| GG21825 [Drosophila erecta]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSST 55
           M+ P+ HTFDEAQ+QIYTLMHRDSYPRF+NS  +K LAQL  +  + G  +DS T
Sbjct: 220 MIEPTTHTFDEAQIQIYTLMHRDSYPRFLNSQKFKTLAQLQDN-SNAGSKADSPT 273

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
FB|FBgn0028743	274	CG5036 [Drosophila melanogaste	0.843	0.197	0.618	3.8e-14
UNIPROTKB|F1NJM4	180	RGS19 "Uncharacterized protein	0.609	0.216	0.769	1.2e-12
MGI|MGI:1929866	239	Rgs20 "regulator of G-protein	0.578	0.154	0.837	1.2e-12
RGD|1586146	242	Rgs20 "regulator of G-protein	0.578	0.152	0.837	1.2e-12
UNIPROTKB|B3KSW4	122	RGS20 "Regulator of G-protein-	0.609	0.319	0.794	1.5e-12
UNIPROTKB|F1NIN7	219	RGS20 "Regulator of G-protein-	0.578	0.168	0.783	2.4e-12
UNIPROTKB|Q9PWA1	218	RGS20 "Regulator of G-protein	0.578	0.169	0.783	2.4e-12
UNIPROTKB|O76081	388	RGS20 "Regulator of G-protein	0.609	0.100	0.794	7.2e-12
UNIPROTKB|E2RH78	381	RGS20 "Uncharacterized protein	0.609	0.102	0.769	1.5e-11
ZFIN|ZDB-GENE-080723-72	216	rgs19 "regulator of G-protein	0.609	0.180	0.692	5.8e-11

FB|FBgn0028743 CG5036 [Drosophila melanogaster (taxid:7227)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 34/55 (61%), Positives = 42/55 (76%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSST 55
             M+ P+ HTFDEAQ+QIYTLMHRDSYPRF+NS  +K LAQL  +  + G  +DS T
Sbjct:   221 MIEPTTHTFDEAQIQIYTLMHRDSYPRFLNSQKFKTLAQLQDN-SNAGSKADSPT 274

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=ISS

GO:0005096 "GTPase activator activity" evidence=ISS;IBA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

UNIPROTKB|F1NJM4 RGS19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 30/39 (76%), Positives = 34/39 (87%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
             M  PS+HTFD+AQLQIYTLMHRDSYPRF+NS +YK L Q
Sbjct:   133 MQEPSSHTFDDAQLQIYTLMHRDSYPRFLNSAIYKSLLQ 171

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

MGI|MGI:1929866 Rgs20 "regulator of G-protein signaling 20" [Mus musculus (taxid:10090)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
             MV PS H FD+AQLQIYTLMHRDSYPRF+NSTVYK L
Sbjct:   192 MVDPSQHIFDDAQLQIYTLMHRDSYPRFMNSTVYKDL 228

GO:0005096 "GTPase activator activity" evidence=IBA;TAS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0005886 "plasma membrane" evidence=IBA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

RGD|1586146 Rgs20 "regulator of G-protein signaling 20" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
             MV PS H FD+AQLQIYTLMHRDSYPRF+NSTVYK L
Sbjct:   195 MVDPSQHIFDDAQLQIYTLMHRDSYPRFMNSTVYKDL 231

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IBA

UNIPROTKB|B3KSW4 RGS20 "Regulator of G-protein-signaling 20" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 31/39 (79%), Positives = 33/39 (84%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
             MV PS H FD+AQLQIYTLMHRDSYPRF+NS VYK L Q
Sbjct:    75 MVEPSQHIFDDAQLQIYTLMHRDSYPRFMNSAVYKDLLQ 113

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|F1NIN7 RGS20 "Regulator of G-protein-signaling 20" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 29/37 (78%), Positives = 33/37 (89%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
             M+ PS HTFD+AQLQIYTLMHRDSYPRF+NS +YK L
Sbjct:   172 MLEPSQHTFDDAQLQIYTLMHRDSYPRFMNSAIYKDL 208

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|Q9PWA1 RGS20 "Regulator of G-protein signaling 20" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 29/37 (78%), Positives = 33/37 (89%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
             M+ PS HTFD+AQLQIYTLMHRDSYPRF+NS +YK L
Sbjct:   171 MLEPSQHTFDDAQLQIYTLMHRDSYPRFMNSAIYKDL 207

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0005634 "nucleus" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IBA

UNIPROTKB|O76081 RGS20 "Regulator of G-protein signaling 20" [Homo sapiens (taxid:9606)]

 Score = 167 (63.8 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 31/39 (79%), Positives = 33/39 (84%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
             MV PS H FD+AQLQIYTLMHRDSYPRF+NS VYK L Q
Sbjct:   341 MVEPSQHIFDDAQLQIYTLMHRDSYPRFMNSAVYKDLLQ 379

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0043547 "positive regulation of GTPase activity" evidence=IBA;TAS

UNIPROTKB|E2RH78 RGS20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 30/39 (76%), Positives = 33/39 (84%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
             MV PS H FD+AQLQIYTLMHRDSYPRF+NS +YK L Q
Sbjct:   334 MVEPSQHIFDDAQLQIYTLMHRDSYPRFMNSALYKDLLQ 372

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-080723-72 rgs19 "regulator of G-protein signaling 19" [Danio rerio (taxid:7955)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 27/39 (69%), Positives = 33/39 (84%)

Query:     1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
             M  P+ H F++AQLQIYTLMHRDSYPRF+NS+VY+ L Q
Sbjct:   169 MQDPTPHIFEDAQLQIYTLMHRDSYPRFLNSSVYRSLVQ 207

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08DC7	RGS19_BOVIN	No assigned EC number	0.7297	0.5781	0.1659	yes	N/A
Q9QZB1	RGS20_MOUSE	No assigned EC number	0.8378	0.5781	0.1548	yes	N/A
P49808	RGS2_CAEEL	No assigned EC number	0.7142	0.5468	0.2071	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
cd08718	118	cd08718, RGS_RZ-like, Regulator of G protein signa	1e-20
cd08746	167	cd08746, RGS_RGS20, Regulator of G protein signali	3e-18
cd08745	118	cd08745, RGS_RGS19, Regulator of G protein signali	2e-16
cd08744	118	cd08744, RGS_RGS17, Regulator of G protein signali	1e-12
cd08705	121	cd08705, RGS_R7-like, Regulator of G protein signa	3e-12
pfam00615	117	pfam00615, RGS, Regulator of G protein signaling d	2e-11
cd08706	113	cd08706, RGS_R12-like, Regulator of G protein sign	3e-11
cd08713	114	cd08713, RGS_RGS3, Regulator of G protein signalin	2e-10
cd08715	114	cd08715, RGS_RGS1, Regulator of G protein signalin	5e-10
smart00315	118	smart00315, RGS, Regulator of G protein signalling	2e-09
cd08740	126	cd08740, RGS_RGS11, Regulator of G protein signali	3e-09
cd08712	114	cd08712, RGS_RGS18, Regulator of G protein signali	7e-09
cd07440	113	cd07440, RGS, Regulator of G protein signaling (RG	2e-08
cd08723	111	cd08723, RGS_RGS21, Regulator of G protein signali	4e-08
cd08717	114	cd08717, RGS_RGS5, Regulator of G protein signalin	5e-08
cd08714	114	cd08714, RGS_RGS4, Regulator of G protein signalin	6e-08
cd08716	114	cd08716, RGS_RGS13, Regulator of G protein signali	1e-07
cd08738	121	cd08738, RGS_RGS7, Regulator of G protein signalin	3e-07
cd08737	125	cd08737, RGS_RGS6, Regulator of G protein signalin	9e-07
cd08739	121	cd08739, RGS_RGS9, Regulator of G protein signalin	1e-06
cd08711	125	cd08711, RGS_RGS8, Regulator of G protein signalin	1e-06
cd08710	114	cd08710, RGS_RGS16, Regulator of G protein signali	3e-05
cd08743	129	cd08743, RGS_RGS14, Regulator of G protein signali	5e-05
cd08709	114	cd08709, RGS_RGS2, Regulator of G protein signalin	8e-05
cd08742	115	cd08742, RGS_RGS12, Regulator of G protein signali	1e-04
cd08707	117	cd08707, RGS_Axin, Regulator of G protein signalin	1e-04

>gnl|CDD|188673 cd08718, RGS_RZ-like, Regulator of G protein signaling (RGS) domain found in the RZ protein

 Score = 77.5 bits (191), Expect = 1e-20
 Identities = 28/35 (80%), Positives = 32/35 (91%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 35
           M+ PS HTFD+AQLQIYTLMHRDSYPRF+NS +YK
Sbjct: 83  MLEPSPHTFDDAQLQIYTLMHRDSYPRFLNSAIYK 117

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by RGS domains, which accelerate GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, which results in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins includes RGS17, RGS19 (former GAIP), RGS20, and its splice variant Ret-RGS. Length = 118

>gnl|CDD|188700 cd08746, RGS_RGS20, Regulator of G protein signaling (RGS) domain found in the RGS20 protein

 Score = 72.7 bits (178), Expect = 3e-18
 Identities = 28/35 (80%), Positives = 32/35 (91%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 35
           M+ PS HTFD+AQLQIYTLMHRDSYPRF+NS +YK
Sbjct: 132 MLEPSQHTFDDAQLQIYTLMHRDSYPRFMNSAIYK 166

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS20 protein (also known as RGSZ1), a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by the RGS domain, which accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP resulting in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins include RGS17, RGS19 (former GAIP), and the splice variant of RGS20, Ret-RGS. RGS20 is expressed exclusively in brain, with the highest concentrations in the temporal lobe and the caudate nucleus and may play a role in signaling regulation in these brain regions. RGS20 acts as a GAP of both G-alpha-z and G-alpha-I and controls signaling in the mu opioid receptor pathway. Length = 167

>gnl|CDD|188699 cd08745, RGS_RGS19, Regulator of G protein signaling (RGS) domain found in the RGS19 protein

 Score = 67.0 bits (163), Expect = 2e-16
 Identities = 28/35 (80%), Positives = 32/35 (91%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 35
           M  PS+HTFD+AQLQIYTLMHRDSYPRF+NS +YK
Sbjct: 83  MQEPSSHTFDDAQLQIYTLMHRDSYPRFLNSPIYK 117

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS19 protein (also known as GAIP), a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by RGS domains, which accelerate GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, resulting in a reassociation of the alpha-subunit with the beta-gamma-dimer and an inhibition of downstream activity. As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins includes RGS17, RGS20, and its splice variant Ret-RGS. RGS19 participates in regulation of dopamine receptor D2R and D3R, as well as beta-adrenergic receptors . Length = 118

>gnl|CDD|188698 cd08744, RGS_RGS17, Regulator of G protein signaling (RGS) domain found in the RGS17 protein

 Score = 57.0 bits (137), Expect = 1e-12
 Identities = 22/35 (62%), Positives = 31/35 (88%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 35
           ++ P+ H +++AQLQIYTLMHRDS+PRF+NS +YK
Sbjct: 83  LLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYK 117

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS17 protein, a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of the G-protein signaling controlled by the RGS domain, which accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, results in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. The RZ subfamily of RGS proteins includes RGS19 (former GAIP), RGS20, and its splice variant Ret-RGS. RGS17 is a relatively non-selective GAP for G-alpha-z and other G-alpha-i/o proteins. RGS17 blocks dopamine receptor-mediated inhibition of cAMP accumulation; it also blocks thyrotropin releasing hormone-stimulated Ca++ mobilization. RGS17, like other members of RZ subfamily, can act either as a GAP or as G-protein effector antogonist. Length = 118

>gnl|CDD|188660 cd08705, RGS_R7-like, Regulator of G protein signaling (RGS) domain found in the R7 subfamily of proteins

 Score = 56.1 bits (136), Expect = 3e-12
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           +  P  +TFD AQ  IY LM +DSYPRF+ S +YK+
Sbjct: 86  LKDPHRYTFDAAQEHIYMLMKKDSYPRFLRSDIYKE 121

The RGS (Regulator of G-protein Signaling) domain is an essential part of the R7 (Neuronal RGS) protein subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The R7 subfamily includes RGS6, RGS7, RGS9, and RGS11, all of which, in humans, are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes. In addition, R7 proteins were found to bind many other proteins outside of the G protein signaling pathways including: m-opioid receptor, beta-arrestin, alpha-actinin-2, NMDAR, polycystin, spinophilin, guanylyl cyclase, among others. Length = 121

>gnl|CDD|216023 pfam00615, RGS, Regulator of G protein signaling domain

 Score = 54.2 bits (131), Expect = 2e-11
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 3   SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
            PS   FDEAQ ++Y LM +DSYPRF+ S +Y +L
Sbjct: 83  QPSPDLFDEAQEEVYDLMEKDSYPRFLKSPLYLRL 117

RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits. Length = 117

>gnl|CDD|188661 cd08706, RGS_R12-like, Regulator of G protein signaling (RGS) domain found in the R12 subfamily of proteins

 Score = 53.5 bits (129), Expect = 3e-11
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 3   SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
            P    F + QLQI+ LM  DSY RF+ S +Y+Q
Sbjct: 80  EPHPDMFQKQQLQIFNLMKFDSYSRFLKSPLYQQ 113

The RGS (Regulator of G-protein Signaling) domain is an essential part of the R12 (Neuronal RGS) protein subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play a critical regulatory role as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling, controlled by RGS domain, accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP that results in reassociation of the alpha-subunit with the beta-gamma-dimer and thereby inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The R12 RGS subfamily includes RGS10, RGS12 and RGS14 all of which are highly selective for G-alpha-i1 over G-alpha-q. Length = 113

>gnl|CDD|188668 cd08713, RGS_RGS3, Regulator of G protein signaling (RGS) domain found in the RGS3 protein

 Score = 51.4 bits (123), Expect = 2e-10
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 34
           + +P+   FD AQ +IY LM +DSYPRF+ S +Y
Sbjct: 79  LQNPTRGCFDLAQKRIYGLMEKDSYPRFLRSDLY 112

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS3 protein. RGS3 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. RGS3 induces apoptosis when overexpressed and is involved in cell migration through interaction with the Ephrin receptor. RGS3 exits as several splice isoforms and interacts with neuroligin, estrogen receptor-alpha, and 14-3-3 outside of the GPCR pathways. Length = 114

>gnl|CDD|188670 cd08715, RGS_RGS1, Regulator of G protein signaling (RGS) domain found in the RGS1 protein

 Score = 50.3 bits (120), Expect = 5e-10
 Identities = 20/34 (58%), Positives = 23/34 (67%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           P+   FDEAQ  IY LM RDSYPRF+ S +Y  L
Sbjct: 81  PTPTCFDEAQKVIYILMERDSYPRFLKSDIYLNL 114

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS1 protein. RGS1 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS 1 is expressed predominantly in hematopoietic compartments, including T and B lymphocytes, and may play a major role in chemokine-mediated homing of lymphocytes to secondary lymphoid organs. In addition, RGS1 interacts with calmodulin and 14-3-3 protein outside of the GPCR pathway. Length = 114

>gnl|CDD|214613 smart00315, RGS, Regulator of G protein signalling domain

 Score = 48.4 bits (116), Expect = 2e-09
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 2   VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
             P    FDEAQ ++Y L+ +DS+PRF+ S  Y + 
Sbjct: 83  EEPPPDLFDEAQREVYELLEKDSFPRFLESDYYLRF 118

RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits. Length = 118

>gnl|CDD|188694 cd08740, RGS_RGS11, Regulator of G protein signaling (RGS) domain found in the RGS11 protein

 Score = 48.8 bits (116), Expect = 3e-09
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 3   SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
            P  +  D+AQ+ IY LM +DSYPRF+ S +YK L
Sbjct: 89  QPHRYVLDDAQMHIYMLMKKDSYPRFLKSDLYKNL 123

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS11 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and RGS9, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS11 is expressed exclusively in retinal ON-bipolar neurons in which it forms complexes with G-beta-5 and R7AP (RGS7 anchor protein ) and plays crucial roles in processing the light responses of retinal neurons. Length = 126

>gnl|CDD|188667 cd08712, RGS_RGS18, Regulator of G protein signaling (RGS) domain found in the RGS18 protein

 Score = 47.2 bits (112), Expect = 7e-09
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 34
           P+  +FD AQ ++Y LM +DSYPRF+ S +Y
Sbjct: 82  PTLTSFDAAQSRVYQLMEQDSYPRFLKSDIY 112

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS18 protein. RGS18 is a member of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS18 is a member of the R4/RGS subfamily and is expressed predominantly in osteoclasts where it acts as a negative regulator of the acidosis-induced osteoclastogenic OGR1/NFAT signaling pathway. RANKL (receptor activator of nuclear factor B ligand) stimulates osteoclastogenesis by inhibiting expression of RGS18. Length = 114

>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain superfamily

 Score = 45.8 bits (109), Expect = 2e-08
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           P    FDEAQ  I  L+ +DSYPRF+ S +Y +
Sbjct: 81  PDPDCFDEAQEHILNLLEKDSYPRFLKSDLYLK 113

The RGS domain is an essential part of the Regulator of G-protein Signaling (RGS) protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. While inactive, G-alpha-subunits bind GDP, which is released and replaced by GTP upon agonist activation. GTP binding leads to dissociation of the alpha-subunit and the beta-gamma-dimer, allowing them to interact with effectors molecules and propagate signaling cascades associated with cellular growth, survival, migration, and invasion. Deactivation of the G-protein signaling controlled by the RGS domain accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, which results in the reassociation of the alpha-subunit with the beta-gamma-dimer and thereby inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins are also involved in apoptosis and cell proliferation, as well as modulation of cardiac development. Several RGS proteins can fine-tune immune responses, while others play important roles in neuronal signals modulation. Some RGS proteins are principal elements needed for proper vision. Length = 113

>gnl|CDD|188678 cd08723, RGS_RGS21, Regulator of G protein signaling (RGS) domain found in the RGS21 protein

 Score = 45.4 bits (107), Expect = 4e-08
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           P+   FDEAQ  IY LM +DS+PRF+ S VYK+
Sbjct: 79  PTLKCFDEAQSLIYCLMAKDSFPRFLKSEVYKK 111

The RGS (Regulator of G-protein Signaling) domain is an essential part RGS21 protein, a member of RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, apoptosis, and cell proliferation, as well as modulation of cardiac development. RGS21 is a member of the R4/RGS subfamily and its mRNA was detected only in sensory taste cells that express sweet taste receptors and the taste G-alpha subunit, gustducin, suggesting a potential role in regulating taste transduction. Length = 111

>gnl|CDD|188672 cd08717, RGS_RGS5, Regulator of G protein signaling (RGS) domain found in the RGS5 protein

 Score = 45.4 bits (107), Expect = 5e-08
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           +V PS+ +FD AQ +I+ LM +DS PRF+ S  Y++
Sbjct: 79  LVEPSSSSFDLAQKRIFALMEKDSLPRFVRSEFYQE 114

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS5 protein. RGS5 is member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Two splice isoforms of RGS5 has been found: RGS5L (long) which is expressed in smooth muscle cells (pericytes) and heart and RGS5S (short) which is highly expressed in the ciliary body of the eye, kidney, brain, spleen, skeletal muscle, and small intestine. Outside of the GPCR pathway, RGS5 interacts with the 14-3-3 protein. Length = 114

>gnl|CDD|188669 cd08714, RGS_RGS4, Regulator of G protein signaling (RGS) domain found in the RGS4 protein

 Score = 44.9 bits (106), Expect = 6e-08
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 34
           M+ P+   FDEAQ +I+TLM +DSY RF+ S  Y
Sbjct: 79  MLEPTISCFDEAQKKIFTLMEKDSYRRFLKSRFY 112

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS4 protein. RGS4 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. RGS4 is expressed widely in brain including prefrontal cortex, striatum, locus coeruleus (LC), and hippocampus and has been implicated in regulation of opioid, cholinergic, and serotonergic signaling. Dysfunctions in RGS4 proteins are involved in etiology of Parkinson's disease, addiction, and schizophrenia. RGS4 also is up-regulated in the failing human heart. RGS4 interacts with many binding partners outside of GPCR pathways, including calmodulin, COP, Kir3, PIP, calcium/CaM, PA, ErbB3, and 14-3-3. Length = 114

>gnl|CDD|188671 cd08716, RGS_RGS13, Regulator of G protein signaling (RGS) domain found in the RGS13 protein

 Score = 44.1 bits (104), Expect = 1e-07
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           P+   FDEAQ  +Y  M RDSYPRF+ S  Y++
Sbjct: 82  PTQSCFDEAQRIVYMHMERDSYPRFLESKFYQK 114

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS13 protein. RGS13 is member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS13 is predominantly expressed in T and B lymphocytes and in mast cells, and plays a role in adaptive immune responses. RGS13 also found in Rgs13, which is also expressed in dendritic cells and in neuroendocrine cells of the thymus, gastrointestinal, and respiratory tracts. Outside of the GPCR pathway, RGS5 interacts with the PIP3 protein. Length = 114

>gnl|CDD|188692 cd08738, RGS_RGS7, Regulator of G protein signaling (RGS) domain found in the RGS7 protein

 Score = 43.6 bits (102), Expect = 3e-07
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           P  +TF++AQ  IY LM  DSYPRFI S+ Y++
Sbjct: 89  PGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQE 121

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS7 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS9, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. R7 RGS proteins are key modulators of the pharmacological effects of drugs involved in the development of tolerance and addiction. In addition, RGS7 was found to bind a component of the synaptic fusion complex, snapin, and some other proteins outside of G protein signaling pathways. Length = 121

>gnl|CDD|188691 cd08737, RGS_RGS6, Regulator of G protein signaling (RGS) domain found in the RGS6 protein

 Score = 42.3 bits (99), Expect = 9e-07
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           P  +TF++AQ  IY LM  DSY RF+ S  Y+ L
Sbjct: 90  PGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDL 123

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS6 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). Other members of the R7 subfamily (Neuronal RGS) include: RGS7, RGS9, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS6 exists in multiple splice isoforms with identical RGS domains, but possess complete or incomplete GGL domains and distinct N- and C-terminal domains. RGS6 interacts with SCG10, a neuronal growth-associated protein and therefore regulates neuronal differentiation. Another RGS6-binding protein is DMAP1, a component of the Dnmt1 complex involved in repression of newly replicated genes. Mutations of a critical residue required for interaction of RGS6 protein with G proteins did not affect the ability of RGS6 to interact with both SCG10 and DMAP1. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Length = 125

>gnl|CDD|188693 cd08739, RGS_RGS9, Regulator of G protein signaling (RGS) domain found in the RGS9 protein

 Score = 41.9 bits (98), Expect = 1e-06
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           P  +  D AQ  IY LM +DSY R++ S +YK+
Sbjct: 89  PHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKE 121

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS9 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS9 forms constitutive complexes with G-beta-5 subunit and controls such fundamental functions as vision and behavior. RGS9 exists in two splice isoforms: RGS9-1 which regulates phototransduction in rods and cones and RGS9-2 which regulates dopamine and opioid signaling in the basal ganglia. In addition, RGS9 was found to bind many other proteins outside of G protein signaling pathways including: mu-opioid receptor, beta-arrestin, alpha-actinin-2, NMDAR, polycystin, spinophilin, and guanylyl cyclase, among others. Length = 121

>gnl|CDD|188666 cd08711, RGS_RGS8, Regulator of G protein signaling (RGS) domain found in the RGS8 protein

 Score = 41.6 bits (97), Expect = 1e-06
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 34
           +  PS   FD+AQ ++++LM +DSYPRF+ S +Y
Sbjct: 90  LQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMY 123

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS8 protein. RGS8 is a member of R4/RGS subfamily of RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS8 is involved in G-protein-gated potassium channels regulation and predominantly expressed in the brain. RGS8 also is selectively expressed in the hematopoietic system (NK cells). Length = 125

>gnl|CDD|188665 cd08710, RGS_RGS16, Regulator of G protein signaling (RGS) domain found in the RGS16 protein

 Score = 38.1 bits (88), Expect = 3e-05
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 9   FDEAQLQIYTLMHRDSYPRFINSTVYK 35
           FD AQ +  TLM +DSYPRF+ S  Y+
Sbjct: 87  FDVAQGKTRTLMEKDSYPRFLKSPAYR 113

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS16 protein. RGS16 is a member of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS16 is a member of the R4/RGS subfamily and interacts with neuronal G-alpha0. RGS16 expression is upregulated by IL-17 of the NF-kappaB signaling pathway in autoimmune B cells. Length = 114

>gnl|CDD|188697 cd08743, RGS_RGS14, Regulator of G protein signaling (RGS) domain found in the RGS14 protein

 Score = 37.7 bits (87), Expect = 5e-05
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           + +PS   F   QLQI+ LM  DSY RF+ S +Y+ 
Sbjct: 90  LATPSPDMFRAQQLQIFNLMKFDSYARFVKSPLYQD 125

RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS14 protein. RGS14 is a member of the RA/RGS subfamily of RGS proteins family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS14 belong to the R12 RGS subfamily, which includes RGS10 and RGS12, all of which are highly selective for G-alpha-i1 over G-alpha-q. RGS14 binds and regulates the subcellular localization and activities of H-Ras and Raf kinases in cells and thereby integrates G protein and Ras/Raf signaling pathways. Length = 129

>gnl|CDD|188664 cd08709, RGS_RGS2, Regulator of G protein signaling (RGS) domain found in the RGS2 protein

 Score = 37.0 bits (85), Expect = 8e-05
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
            ++  F  AQ ++Y+LM  +SYPRF+ S  Y++
Sbjct: 82  ATSGCFTAAQKRVYSLMENNSYPRFLESEFYQE 114

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS2 protein. RGS2 is a member of R4/RGS subfamily of RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G- alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS2 plays important roles in the regulation of blood pressure and the pathogenesis of human hypertension, as well as in bone formation in osteoblasts. Outside of the GPCR pathway RGS2 interacts with calmodulin, beta- COP, tubulin, PKG1-alpha, and TRPV6. Length = 114

>gnl|CDD|188696 cd08742, RGS_RGS12, Regulator of G protein signaling (RGS) domain found in the RGS12 protein

 Score = 36.6 bits (84), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 3   SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
           +P    F E QLQI+ LM  DSY RF+ S +Y++
Sbjct: 82  APHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQE 115

RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS12 protein. RGS12 is a member of the RA/RGS subfamily of RGS proteins family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS12 belong to the R12 RGS subfamily, which includes RGS10 and RGS14, all of which are highly selective for G-alpha-i1 over G-alpha-q. RGS12 exist in multiple splice variants: RGS12s (short) contains the core RGS/RBD/GoLoco domains, while RGS12L (long) has additional N-terminal PDZ and PTB domains. RGS12 splice variants show distinct expression patterns, suggesting that they have discrete functions during mouse embryogenesis. RGS12 also may play a critical role in coordinating Ras-dependent signals that are required for promoting and maintaining neuronal differentiation. Length = 115

>gnl|CDD|188662 cd08707, RGS_Axin, Regulator of G protein signaling (RGS) domain found in the Axin protein

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 36
                FD+AQ +I T M  ++YP F+ S +Y +
Sbjct: 85  LDPAMFDQAQTEIQTTMEENTYPSFLKSDIYLE 117

The RGS (Regulator of G-protein Signaling) domain is an essential part of the Axin protein. Axin is a member of the RA/RGS subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, and skeletal and muscle development. The RGS domain of Axin is specifically interacts with the heterotrimeric G-alpha12 protein, but not with closely related G-alpha13, and provides a unique tool to regulate G-alpha12-mediated signaling processes. The RGS domain of Axin also interacts with the tumor suppressor protein APC (Adenomatous Polyposis Coli) in order to control the cytoplasmic level of the proto-oncogene, beta-catenin. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
KOG3589|consensus	221		99.49
smart00315	118	RGS Regulator of G protein signalling domain. RGS	98.8
PF00615	118	RGS: Regulator of G protein signaling domain; Inte	98.61
KOG3590|consensus	602		95.9
KOG3590|consensus	602		92.88

>KOG3589|consensus

Probab=99.49  E-value=2.2e-14  Score=98.46  Aligned_cols=43  Identities=47%  Similarity=0.818  Sum_probs=39.4

Q ss_pred             CCCCC--HHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249           1 MVSPS--NHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS   43 (64)
Q Consensus         1 l~~P~--~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~   43 (64)
                      |.+|+  ++|||.||.+||.||++|||||||+|++|++++.....
T Consensus       161 l~~p~~~~~~f~~Aq~~i~~lm~~dsy~RFl~s~~y~~l~~~~~~  205 (221)
T KOG3589|consen  161 LSEPSGQRTCFDEAQKHVYTLMEKDSYPRFLRSPLYLDLLKQPKK  205 (221)
T ss_pred             hcCCCCCCCcHHHHHHHHHHhcccCCCccccCCHHHHHHHHHhhc
Confidence            46788  99999999999999999999999999999999996554

>smart00315 RGS Regulator of G protein signalling domain

Probab=98.80  E-value=3.4e-09  Score=63.47  Aligned_cols=34  Identities=44%  Similarity=0.879  Sum_probs=32.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCcccchhccHHHHH
Q psy1249           3 SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ   36 (64)
Q Consensus         3 ~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~   36 (64)
                      .|++++|+.||.+|+.+|+.|+||||++|+.|.+
T Consensus        84 ~~~~~~F~~~~~~v~~~l~~~~~~~F~~S~~y~~  117 (118)
T smart00315       84 EPPPDLFDEAQEEVYELLEKDSFPRFLESDYYLR  117 (118)
T ss_pred             CCChHHHHHHHHHHHHHHhcCchHHHhCCHhhcc
Confidence            4889999999999999999999999999999975

RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.

>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []

Probab=98.61  E-value=2.4e-08  Score=59.00  Aligned_cols=35  Identities=43%  Similarity=0.840  Sum_probs=32.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHH
Q psy1249           3 SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL   37 (64)
Q Consensus         3 ~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~l   37 (64)
                      .|.+++|+.||.+|+..|+.+.||+|++|+.|+++
T Consensus        84 ~~~~~~f~~a~~~v~~~L~~~~~~~F~~S~~y~~~  118 (118)
T PF00615_consen   84 PPSPDLFDEAQEEVYEMLEEDWFPKFLKSEEYKQF  118 (118)
T ss_dssp             STTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhhchHHhHccCHhhhcC
Confidence            38899999999999999999999999999999874

Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....

>KOG3590|consensus

Probab=95.90  E-value=0.0032  Score=49.58  Aligned_cols=34  Identities=26%  Similarity=0.528  Sum_probs=30.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhCcccchhccHHHHHH
Q psy1249           4 PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL   37 (64)
Q Consensus         4 P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~l   37 (64)
                      .+++|||+||.-|+.-||+|-+.-||+|..|-.+
T Consensus       273 i~~~CFDEAq~~v~~~~e~Dhf~~fl~s~h~~~y  306 (602)
T KOG3590|consen  273 VDPNCFDEAQSIVFSAMEQDHFSEFLRSHHFCKY  306 (602)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhccccce
Confidence            5789999999999999999999999999886543

>KOG3590|consensus

Probab=92.88  E-value=0.13  Score=40.87  Aligned_cols=57  Identities=16%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCCCCCCCCCCCCCChhhh
Q psy1249           3 SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARK   59 (64)
Q Consensus         3 ~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~~~~~~~~~~~~~~~~~   59 (64)
                      .|-+..|+.|-.+-+.-+++--+|.||+|.+|-++|..-....+..+|++-+..-+|
T Consensus       408 gp~~~AF~tAl~~~~~~Le~KYl~DFLKs~~y~NYlnEL~~~~~~~~fl~~TvsL~R  464 (602)
T KOG3590|consen  408 GPLPNAFTTALRQAWTTLEKKYLPDFLKSNLYYNYLNELIHSVRGDEFLGGTVSLTR  464 (602)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCceeeccC
Confidence            388999999999999999999999999999999999966665666677666555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	64
1cmz_A	152	Solution Structure Of Gaip (Galpha Interacting Prot		4e-11
1zv4_X	158	Structure Of The Regulator Of G-Protein Signaling 1		4e-10
2a72_A	146	Structure Of The Regulator Of G-Protein Signaling D		3e-07
2bv1_A	145	Regulator Of G-Protein Signalling 1 (Human) Length		2e-06
2d9j_A	139	Solution Structure Of The Rgs Domain Of Regulator O		3e-06
2crp_A	150	Solution Structure Of The Rgs Domain Of Regulator O		2e-05
1ezt_A	166	High-Resolution Solution Structure Of Free Rgs4 By		2e-05
2jm5_A	151	Solution Structure Of The Rgs Domain From Human Rgs		7e-05
2dlv_A	140	Solution Structure Of The Rgs Domain Of Human Regul		9e-05
2jnu_A	154	Solution Structure Of The Rgs Domain Of Human Rgs14		1e-04
2ihd_A	155	Crystal Structure Of Human Regulator Of G-Protein S		1e-04
2ode_B	141	Crystal Structure Of The Heterodimeric Complex Of H		1e-04
1agr_E	205	Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4 Leng		2e-04
1fqj_B	147	Crystal Structure Of The Heterotrimeric Complex Of		3e-04
2pbi_A	424	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-04
2oj4_A	127	Crystal Structure Of Rgs3 Rgs Domain Length = 127		7e-04
3c7l_A	137	Molecular Architecture Of Galphao And The Structura		7e-04
3c7k_B	129	Molecular Architecture Of Galphao And The Structura		8e-04

>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A Regulator Of G Protein Signaling Length = 152

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)
Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+ L
Sbjct: 102 MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 138

>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17 (Rgsz2) Length = 158

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           ++ P+ H +++AQLQIYTLMHRDS+PRF+NS +YK   +
Sbjct: 115 LLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVE 153

>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain Of Rgs7 Length = 146

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDT 47
           P  +TF++AQ  IY LM  DSYPRFI S+ Y++L Q     G++
Sbjct: 97  PGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSGNS 140

>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human) Length = 145

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 3   SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           +P+   FDEAQ  IYTLM +DSYPRF+ S +Y  L
Sbjct: 105 APTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNL 139

>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G- Protein Signaling 7 Length = 139

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 3   SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
            P  +TF++AQ  IY LM  DSYPRFI S+ Y++L
Sbjct: 98  EPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQEL 132

>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G- Protein Signalling 5 (Rgs 5) Length = 150

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           +V PS  +FD AQ +I+ LM +DS PRF+ S  Y++L
Sbjct: 107 LVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQEL 143

>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr Length = 166

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARKS 60
           M+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L    ++P   G   +    A+ S
Sbjct: 95  MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL----TNPSSCGA--EKQKGAKSS 148
Query: 61  SNAT 64
           ++ T
Sbjct: 149 ADCT 152

>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18 Length = 151

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           +  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L +
Sbjct: 93  ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLME 131

>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of G-Protein Signaling 18 Length = 140

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           +  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L
Sbjct: 97  ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 133

>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14 Length = 154

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ--LAQLDSSPGDTGGNSDSSTP 56
           +  P    F   QLQI+ LM  DSY RF+ S +Y++  LA+ +  P    G+S   +P
Sbjct: 94  LAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAEGRPLREPGSSRLGSP 151

>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein Signaling 8, Rgs8 Length = 155

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           PS   FD+AQ ++++LM +DSYPRF+ S +Y  L
Sbjct: 120 PSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDL 153

>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 141

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           PS   FD+AQ ++++LM +DSYPRF+ S +Y  L
Sbjct: 99  PSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDL 132

>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4 Length = 205

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSS 54
           M+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L    S   +    + SS
Sbjct: 141 MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTNPSSCGAEKQKGAKSS 194

>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 147

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           P  +  D AQ  IY LM +DSY R++ S +YK++
Sbjct: 105 PHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 138

>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 424

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           P  +  D AQ  IY LM +DSY R++ S +YK++
Sbjct: 382 PHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 415

>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain Length = 127

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 3   SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           S +   FD AQ +I+ LM +DSYPRF+ S +Y  L
Sbjct: 91  SVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 125

>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 137

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 8   TFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 38
            FD AQ +  TLM +DSYPRF+ S  Y+ LA
Sbjct: 107 CFDVAQGKTRTLMEKDSYPRFLKSPAYRDLA 137

>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 129

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 8   TFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 38
            FD AQ +  TLM +DSYPRF+ S  Y+ LA
Sbjct: 99  CFDVAQGKTRTLMEKDSYPRFLKSPAYRDLA 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	64
3c7l_A	137	Regulator of G-protein signaling 16; RGS, RGS16, G	2e-13
2oj4_A	127	RGS3, regulator of G-protein signaling 3, RGP3; RG	4e-13
2af0_A	146	Regulator of G-protein signaling 2; helix, structu	6e-13
2dlv_A	140	RGS18, regulator of G-protein signaling 18; RGS do	9e-13
2crp_A	150	RGS5, regulator of G-protein signaling 5; RGS doma	2e-12
1fqi_A	147	RGS9, regulator of G-protein signaling 9; phototra	2e-12
2bv1_A	145	Regulator of G-protein signalling 1; RGS1, RGS, st	2e-12
1agr_E	205	RGS4; GI-alpha-1, hydrolase, signal transduction,	2e-12
2a72_A	146	Regulator of G-protein signalling 7; human RGS7, r	6e-12
2ihb_B	153	Regulator of G-protein signalling 10, guanine nucl	7e-12
1zv4_X	158	RGS17, regulator of G-protein signaling 17; human	7e-12
2jnu_A	154	RGS14, regulator of G-protein signaling 14; regula	8e-12
2ihd_A	155	RGS8, regulator of G-protein signaling 8; signalin	9e-12
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	9e-12
2dlr_A	149	RGS10, regulator of G-protein signaling 10; RGS do	1e-11
1cmz_A	152	Protein (GAIP (G-alpha interacting) protein); RGS,	2e-11
2jm5_A	151	RGS18, regulator of G-protein signaling 18; signal	4e-11
1dk8_A	147	Axin; alpha-helix, PI-helix, signaling protein; HE	1e-10
2ebz_A	155	RGS12, regulator of G-protein signaling 12; RGS do	2e-10
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B* Length = 137

 Score = 58.9 bits (142), Expect = 2e-13
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA 38
           + + +   FD AQ +  TLM +DSYPRF+ S  Y+ LA
Sbjct: 100 LQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDLA 137

>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens} Length = 127

 Score = 58.0 bits (140), Expect = 4e-13
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           + S +   FD AQ +I+ LM +DSYPRF+ S +Y  L
Sbjct: 89  LQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 125

>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B* Length = 146

 Score = 58.1 bits (140), Expect = 6e-13
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           +   ++  F  AQ ++Y+LM  +SYPRF+ S  Y+ L +
Sbjct: 105 IQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCK 143

>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 140

 Score = 57.3 bits (138), Expect = 9e-13
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43
           +  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L    SS
Sbjct: 97  ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMSGPSS 139

>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 150

 Score = 56.6 bits (136), Expect = 2e-12
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43
           +V PS  +FD AQ +I+ LM +DS PRF+ S  Y++L    SS
Sbjct: 107 LVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQELISGPSS 149

>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B* Length = 147

 Score = 56.6 bits (136), Expect = 2e-12
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSP 44
           +  P  +  D AQ  IY LM +DSY R++ S +YK++      P
Sbjct: 102 LKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP 145

>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C* Length = 145

 Score = 56.5 bits (136), Expect = 2e-12
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           + +P+   FDEAQ  IYTLM +DSYPRF+ S +Y  L  
Sbjct: 103 IKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNLLN 141

>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A Length = 205

 Score = 57.5 bits (138), Expect = 2e-12
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTP 56
           M+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L    S   +    + SS  
Sbjct: 141 MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTNPSSCGAEKQKGAKSSAD 196

>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A Length = 146

 Score = 55.4 bits (133), Expect = 6e-12
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDS 53
           +  P  +TF++AQ  IY LM  DSYPRFI S+ Y++L Q     G++     S
Sbjct: 94  VKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSGNSMDRRTS 146

>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A Length = 153

 Score = 55.4 bits (133), Expect = 7e-12
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           +  P    F + Q QI+ LM  DSY RF+ S ++ +  +
Sbjct: 112 LEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHKR 150

>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens} Length = 158

 Score = 55.4 bits (133), Expect = 7e-12
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           ++ P+ H +++AQLQIYTLMHRDS+PRF+NS +YK   +
Sbjct: 115 LLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVE 153

>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Length = 154

 Score = 55.4 bits (133), Expect = 8e-12
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL--AQLDSSPGDTGGNSDSSTP 56
           +  P    F   QLQI+ LM  DSY RF+ S +Y++   A+ +  P    G+S   +P
Sbjct: 94  LAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAEGRPLREPGSSRLGSP 151

>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A Length = 155

 Score = 55.4 bits (133), Expect = 9e-12
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           +  PS   FD+AQ ++++LM +DSYPRF+ S +Y  L
Sbjct: 117 LQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDL 153

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 424

 Score = 56.7 bits (136), Expect = 9e-12
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSP 44
           +  P  +  D AQ  IY LM +DSY R++ S +YK++      P
Sbjct: 379 LRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP 422

>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 149

 Score = 55.0 bits (132), Expect = 1e-11
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS 43
           +  P    F + Q QI+ LM  DSY RF+ S ++ +  + +  
Sbjct: 96  LEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHKRTEEE 138

>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1 Length = 152

 Score = 54.3 bits (130), Expect = 2e-11
 Identities = 30/45 (66%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ-LAQLDSSP 44
           M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+  L  +DSS 
Sbjct: 102 MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALLPWVDSSS 146

>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A Length = 151

 Score = 53.5 bits (128), Expect = 4e-11
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ-LDSSPGDTGGNSDSSTP 56
           +  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L +     P +    S S T 
Sbjct: 93  ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMEGRPQRPTNLRRRSRSFTC 149

>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A Length = 147

 Score = 52.0 bits (124), Expect = 1e-10
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ-LAQLDSSP 44
                FD+AQ +I   M  ++YP F+ S +Y +       SP
Sbjct: 104 IDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESP 145

>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 155

 Score = 51.6 bits (123), Expect = 2e-10
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ-LAQLDSSPGDTGGNSDSSTPA 57
           + +P    F E QLQI+ LM  DSY RF+ S +Y++ +                S+PA
Sbjct: 98  LRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECILAEVEGRALPDSQQVPSSPA 155

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)

Query: 11 EAQLQIYTLMHRDSYPRF-INSTV 33
          +A L++Y     DS P   I +T+
Sbjct: 26 QASLKLYA---DDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
1fqi_A	147	RGS9, regulator of G-protein signaling 9; phototra	99.4
2dlr_A	149	RGS10, regulator of G-protein signaling 10; RGS do	99.4
2jm5_A	151	RGS18, regulator of G-protein signaling 18; signal	99.39
2jnu_A	154	RGS14, regulator of G-protein signaling 14; regula	99.38
2ebz_A	155	RGS12, regulator of G-protein signaling 12; RGS do	99.37
2dlv_A	140	RGS18, regulator of G-protein signaling 18; RGS do	99.34
2a72_A	146	Regulator of G-protein signalling 7; human RGS7, r	99.34
1dk8_A	147	Axin; alpha-helix, PI-helix, signaling protein; HE	99.32
1zv4_X	158	RGS17, regulator of G-protein signaling 17; human	99.32
2oj4_A	127	RGS3, regulator of G-protein signaling 3, RGP3; RG	99.31
2crp_A	150	RGS5, regulator of G-protein signaling 5; RGS doma	99.31
2bv1_A	145	Regulator of G-protein signalling 1; RGS1, RGS, st	99.31
1cmz_A	152	Protein (GAIP (G-alpha interacting) protein); RGS,	99.3
2af0_A	146	Regulator of G-protein signaling 2; helix, structu	99.25
2ihd_A	155	RGS8, regulator of G-protein signaling 8; signalin	99.25
3c7l_A	137	Regulator of G-protein signaling 16; RGS, RGS16, G	99.24
2ihb_B	153	Regulator of G-protein signalling 10, guanine nucl	99.24
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	99.18
1agr_E	205	RGS4; GI-alpha-1, hydrolase, signal transduction,	99.16

>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*

Probab=99.40  E-value=9.6e-14  Score=88.32  Aligned_cols=45  Identities=36%  Similarity=0.677  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCCCC
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPG   45 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~~~   45 (64)
                      |..|++++||+||.+|+.+|+.|+|||||+|+.|.++++....|.
T Consensus       102 l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~p~  146 (147)
T 1fqi_A          102 LKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEPQ  146 (147)
T ss_dssp             TTSCCTTTTHHHHHHHHHHHHHHTHHHHHTSHHHHHHHHHSCCC-
T ss_pred             hcCCCHHHHHHHHHHHHHHHhhCcHHHHhcCHHHHHHHHHhhCCC
Confidence            357899999999999999999999999999999999999776553

>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.6e-13  Score=87.23  Aligned_cols=43  Identities=30%  Similarity=0.526  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCCC
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSP   44 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~~   44 (64)
                      .+|++++||+||.+|+.+|+.|+|||||+|+.|.++++..+.+
T Consensus        97 ~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~~  139 (149)
T 2dlr_A           97 EEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHKRTEEEE  139 (149)
T ss_dssp             HSCCTTHHHHHHHHHHHHHHHTTHHHHHHSHHHHHHHHHHSCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHChHHHHhcCHHHHHHHHhhccc
Confidence            3689999999999999999999999999999999999965443

>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A

Probab=99.39  E-value=7.1e-14  Score=89.25  Aligned_cols=42  Identities=40%  Similarity=0.764  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS   42 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~   42 (64)
                      |+.|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus        93 l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~  134 (151)
T 2jm5_A           93 ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMEGRP  134 (151)
T ss_dssp             TTSCCTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTSCC
T ss_pred             HhCCCHHHHHHHHHHHHHHHhhChhHhHhcCHHHHHHHHHhc
Confidence            457999999999999999999999999999999999998654

>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=99.38  E-value=4e-14  Score=90.65  Aligned_cols=48  Identities=35%  Similarity=0.625  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHH--hcCCCCCCCC
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ--LDSSPGDTGG   49 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~--~~~~~~~~~~   49 (64)
                      .+|++++||+||.+|+.+|+.|+||||++|+.|.++|.  .++.+....+
T Consensus        95 ~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~~e~~p~~~~~  144 (154)
T 2jnu_A           95 AEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAEGRPLREPG  144 (154)
T ss_dssp             HSCCTTTTHHHHHHHHHHHHTTHHHHHTTSTTHHHHHCSSCC--------
T ss_pred             cCCCHHHHHHHHHHHHHHHHhChhHhhccCHHHHHHHHHHhcCCCCCCCc
Confidence            36899999999999999999999999999999999997  4444443333

>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=4.8e-13  Score=85.69  Aligned_cols=45  Identities=36%  Similarity=0.609  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHH--hcCCCCC
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ--LDSSPGD   46 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~--~~~~~~~   46 (64)
                      .+|++++||+||.+|+.+|+.|+||||++|+.|.++|.  .++.+..
T Consensus        99 ~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~~e~~~~~  145 (155)
T 2ebz_A           99 RAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECILAEVEGRALP  145 (155)
T ss_dssp             HSCCTTHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHHHHTCCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHChhHHHhhCHHHHHHHHHHhcCCCCC
Confidence            36899999999999999999999999999999999988  4455443

>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.4e-13  Score=85.21  Aligned_cols=41  Identities=44%  Similarity=0.762  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS   42 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~   42 (64)
                      +.|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus        98 ~~p~~~~F~~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~  138 (140)
T 2dlv_A           98 TQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMSGPS  138 (140)
T ss_dssp             GSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHCCSS
T ss_pred             cCCCHHHHHHHHHHHHHHHhhCcchhhccCHHHHHHHHhcc
Confidence            46899999999999999999999999999999999998543

>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A

Probab=99.34  E-value=1.4e-13  Score=87.26  Aligned_cols=42  Identities=48%  Similarity=0.807  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS   43 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~   43 (64)
                      .+|++++||+||.+|+.+|+.|+||||++|+.|.++++..+.
T Consensus        95 ~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~  136 (146)
T 2a72_A           95 KEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKK  136 (146)
T ss_dssp             HSTTTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHC---
T ss_pred             cCCCHHHHHHHHHHHHHHHHhChhHhHhcCHHHHHHHHHhhc
Confidence            368999999999999999999999999999999999996543

>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A

Probab=99.32  E-value=3.2e-13  Score=85.16  Aligned_cols=41  Identities=29%  Similarity=0.526  Sum_probs=37.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249           3 SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS   43 (64)
Q Consensus         3 ~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~   43 (64)
                      .|++++||+||.+|+.+|+.|+|||||+|+.|.++++..+.
T Consensus       103 ~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~  143 (147)
T 1dk8_A          103 LIDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSE  143 (147)
T ss_dssp             CCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTTTTSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHhccc
Confidence            58899999999999999999999999999999999985543

>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}

Probab=99.32  E-value=5.6e-13  Score=86.23  Aligned_cols=42  Identities=52%  Similarity=1.038  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS   42 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~   42 (64)
                      |.+|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus       115 l~~p~~~~Fd~aq~~V~~lm~~d~fprFl~S~~y~~~l~~~~  156 (158)
T 1zv4_X          115 LLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFVESTA  156 (158)
T ss_dssp             TSSCCTTTTHHHHHHHHHHHHHTTHHHHTTSHHHHHHHHHHC
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHChHHhHhcCHHHHHHHHHhc
Confidence            457999999999999999999999999999999999998543

>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}

Probab=99.31  E-value=1.9e-13  Score=84.08  Aligned_cols=38  Identities=45%  Similarity=0.748  Sum_probs=35.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHH
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   38 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll   38 (64)
                      |.+|++++||+||.+|+.+|+.|+||||++|+.|.++|
T Consensus        89 l~~~~~~~F~~aq~~v~~~m~~d~~~rFl~S~~y~~~l  126 (127)
T 2oj4_A           89 LQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI  126 (127)
T ss_dssp             TSSCCTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHTTT
T ss_pred             hcCCCHHHHHHHHHHHHHHHhhChhhhhccCHHHHHHh
Confidence            35699999999999999999999999999999999876

>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.7e-13  Score=84.78  Aligned_cols=42  Identities=45%  Similarity=0.681  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS   42 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~   42 (64)
                      |+.|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus       107 l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~  148 (150)
T 2crp_A          107 LVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQELISGPS  148 (150)
T ss_dssp             TSSCSSGGGHHHHHHHHHHHHHTHHHHHHHSHHHHHHHSSSS
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHcc
Confidence            357999999999999999999999999999999999998543

>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*

Probab=99.31  E-value=5.2e-13  Score=84.57  Aligned_cols=39  Identities=51%  Similarity=0.838  Sum_probs=36.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHh
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL   40 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~   40 (64)
                      .+|++++||+||.+|+.+|+.|+||||++|+.|.++++.
T Consensus       104 ~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~  142 (145)
T 2bv1_A          104 KAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNLLND  142 (145)
T ss_dssp             TSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhhhccCHHHHHHHHH
Confidence            468999999999999999999999999999999999984

>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1

Probab=99.30  E-value=2.3e-13  Score=86.62  Aligned_cols=43  Identities=65%  Similarity=1.026  Sum_probs=36.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS   43 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~   43 (64)
                      |..|++++||+||.+|+.+|+.|+||||++|+.|.++++..+.
T Consensus       102 l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~~  144 (152)
T 1cmz_A          102 MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALLPWVDS  144 (152)
T ss_dssp             SSSCCTTSTHHHHHHHHHHHHHHTHHHHTTCHHHHTTC-----
T ss_pred             hcCCchHHHHHHHHHHHHHHHHChHHhHhcCHHHHHHHHHhCC
Confidence            4579999999999999999999999999999999999985443

>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*

Probab=99.25  E-value=9.3e-13  Score=83.31  Aligned_cols=39  Identities=36%  Similarity=0.716  Sum_probs=36.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHh
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL   40 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~   40 (64)
                      +.|++++|++||.+|+.+|+.|+||||++|+.|.++++.
T Consensus       106 ~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~  144 (146)
T 2af0_A          106 QEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLCKK  144 (146)
T ss_dssp             GGCCTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHHHHCC
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChHHhHccCHHHHHHHhc
Confidence            468999999999999999999999999999999999874

>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A

Probab=99.25  E-value=9.2e-13  Score=84.83  Aligned_cols=39  Identities=44%  Similarity=0.748  Sum_probs=35.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHH
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ   39 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~   39 (64)
                      |+.|++++||+||.+|+.+|+.|+||||++|+.|.++|+
T Consensus       117 l~~p~~~~Fd~aq~~V~~~m~~d~f~rFl~S~~y~~~l~  155 (155)
T 2ihd_A          117 LQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLLS  155 (155)
T ss_dssp             TTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHTTC-
T ss_pred             HcCCCHHHHHHHHHHHHHHHhhChhHhhccCHHHHHHHC
Confidence            357999999999999999999999999999999998763

>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*

Probab=99.24  E-value=4.8e-13  Score=84.23  Aligned_cols=37  Identities=46%  Similarity=0.743  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHH
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   38 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll   38 (64)
                      +.|++++||+||.+|+.+|+.|+||||++|+.|.++|
T Consensus       101 ~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l  137 (137)
T 3c7l_A          101 QAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDLA  137 (137)
T ss_dssp             HTTCTTTTHHHHHHHHHHHHTTHHHHHHTSHHHHTTC
T ss_pred             HcCCHHHHHHHHHHHHHHHHHChhHhhCcCHHHHHhC
Confidence            3689999999999999999999999999999998764

>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A

Probab=99.24  E-value=6.4e-13  Score=84.94  Aligned_cols=39  Identities=33%  Similarity=0.557  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHh
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL   40 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~   40 (64)
                      .+|++++||+||.+|+.+|+.|+||||++|+.|.++++.
T Consensus       113 ~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~  151 (153)
T 2ihb_B          113 EEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHKRT  151 (153)
T ss_dssp             --CCTTTTHHHHHHHHHHHHHTHHHHHTTSTTTC-----
T ss_pred             cCCCHHHHHHHHHHHHHHHHHChHHhhccCHHHHHHHhc
Confidence            468999999999999999999999999999999999874

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.18  E-value=8.3e-12  Score=92.86  Aligned_cols=45  Identities=36%  Similarity=0.675  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCCCC
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPG   45 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~~~   45 (64)
                      |.+|++++||+||.+||.||+.|+|||||+|+.|+++|+....|.
T Consensus       379 l~~P~~~lFd~AQ~~V~~lM~~DsyprFl~S~~Y~~~Lq~~~~p~  423 (424)
T 2pbi_A          379 LRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEPQ  423 (424)
T ss_dssp             TTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHHHCBCCC
T ss_pred             HhCCCHHHHHHHHHHHHHHHhhCchHhHhcCHHHHHHHHHccCCC
Confidence            457999999999999999999999999999999999999766553

>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A

Probab=99.16  E-value=3.6e-12  Score=86.42  Aligned_cols=42  Identities=45%  Similarity=0.763  Sum_probs=36.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcC
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS   42 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~   42 (64)
                      |++|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus       141 l~~p~~~lFd~aq~~V~~lM~~d~fprFl~S~~Y~~~l~~~~  182 (205)
T 1agr_E          141 MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLTNPSS  182 (205)
T ss_dssp             TTSCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTCC----
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHhhHHHHhcCHHHHHHHHhhc
Confidence            457999999999999999999999999999999999998543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	64
d1agre_	128	a.91.1.1 (E:) Regulator of G-protein signaling 4,	6e-13
d1cmza_	128	a.91.1.1 (A:) Galpha interacting protein, GaIP {Hu	1e-12
d2jm5a1	132	a.91.1.1 (A:3-134) Regulator of G-protein signalin	1e-12
d2ik8b1	116	a.91.1.1 (B:65-180) Regulator of G-protein signali	1e-12
d1fqia_	138	a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [	2e-12
d1omwa1	157	a.91.1.1 (A:29-185) G-protein coupled receptor kin	5e-12
d1dk8a_	147	a.91.1.1 (A:) Axin RGS-homologous domain {Human (H	2e-10

>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 4, RGS4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.5 bits (136), Expect = 6e-13
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L
Sbjct: 91  MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 127

>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Galpha interacting protein, GaIP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 1e-12
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+ L
Sbjct: 91  MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 127

>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]} Length = 132

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 18, RGS18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 1e-12
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
           +  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L +
Sbjct: 91  ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLME 129

>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 16, RGS16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 1e-12
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 37
           + + +   FD AQ +  TLM +DSYPRF+ S  Y+ L
Sbjct: 80  LQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDL 116

>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]} Length = 138

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: RGS9, RGS domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (133), Expect = 2e-12
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSP 44
           +  P  +  D AQ  IY LM +DSY R++ S +YK++      P
Sbjct: 95  LKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIEP 138

>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 157

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: G-protein coupled receptor kinase 2, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.6 bits (131), Expect = 5e-12
 Identities = 7/39 (17%), Positives = 13/39 (33%)

Query: 1   MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
                   F     +I   +  D + +FI S  + +  Q
Sbjct: 110 KKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQ 148

>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Axin RGS-homologous domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 2e-10
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 4   PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 39
                FD+AQ +I   M  ++YP F+ S +Y +  +
Sbjct: 104 IDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTR 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d1fqia_	138	RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]}	99.36
d1dk8a_	147	Axin RGS-homologous domain {Human (Homo sapiens) [	99.36
d2ik8b1	116	Regulator of G-protein signaling 16, RGS16 {Human	99.35
d1omwa1	157	G-protein coupled receptor kinase 2, N-terminal do	99.29
d1agre_	128	Regulator of G-protein signaling 4, RGS4 {Rat (Rat	99.25
d1cmza_	128	Galpha interacting protein, GaIP {Human (Homo sapi	99.22
d2jm5a1	132	Regulator of G-protein signaling 18, RGS18 {Human	99.2
d1htjf_	182	Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [	88.5

>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: RGS9, RGS domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=1.1e-13  Score=85.72  Aligned_cols=43  Identities=35%  Similarity=0.658  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS   43 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~   43 (64)
                      +.+|++++|+.||++||.+|+.|+|||||+|+.|+++|..+..
T Consensus        95 ~~~~~~~~F~~aq~~V~~~l~~~~~~~Fl~S~~y~~~l~~~~~  137 (138)
T d1fqia_          95 LKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAIE  137 (138)
T ss_dssp             TTSCCTTTTHHHHHHHHHHHHHHTHHHHHTSHHHHHHHHHSCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhHHHhHhcCHHHHHHHHhhcC
Confidence            4579999999999999999999999999999999999986654

>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Axin RGS-homologous domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.9e-14  Score=87.10  Aligned_cols=41  Identities=29%  Similarity=0.526  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHhcCC
Q psy1249           3 SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSS   43 (64)
Q Consensus         3 ~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~~~~   43 (64)
                      .|++.+|++||.+||.+|+.|+|||||+|+.|+++|+..+.
T Consensus       103 ~~~~~~F~~Aq~~V~~lme~d~~p~Fl~S~~y~~~l~~~~~  143 (147)
T d1dk8a_         103 LIDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSE  143 (147)
T ss_dssp             CCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTTTTSCCC
T ss_pred             CCChHHHHHHHHHHHHHHhhCcccccccCHHHHHHHHccCC
Confidence            58899999999999999999999999999999999985443

>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 16, RGS16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.9e-14  Score=83.42  Aligned_cols=36  Identities=44%  Similarity=0.755  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHH
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL   37 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~l   37 (64)
                      .+|++++|+.||++|+.+|+.|+||+||+|+.|+++
T Consensus        81 ~~~~~~~F~~aq~~V~~~le~d~yp~Fl~S~~y~~L  116 (116)
T d2ik8b1          81 QTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDL  116 (116)
T ss_dssp             TTCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhccccccccCHhhccC
Confidence            579999999999999999999999999999999986

>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: G-protein coupled receptor kinase 2, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.29  E-value=3.2e-13  Score=85.88  Aligned_cols=38  Identities=18%  Similarity=0.317  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHH
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ   39 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~   39 (64)
                      .+|++++|+.||++|+.+|+.|+|||||+|+.|..+|+
T Consensus       111 ~~~~~~~F~~aq~~V~~lL~~d~fprFl~S~~y~r~LQ  148 (157)
T d1omwa1         111 KQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQ  148 (157)
T ss_dssp             TCCCTTTTHHHHHHHHHHHTTHHHHHHHTSHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCchHHHhcCHHHHHHHh
Confidence            46999999999999999999999999999999999996

>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 4, RGS4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=4.6e-13  Score=81.82  Aligned_cols=37  Identities=49%  Similarity=0.850  Sum_probs=34.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHH
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL   37 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~l   37 (64)
                      +.+|++++|+.||++||.+|+.|+||+||+|+.|+++
T Consensus        91 ~~~~~~~~F~~aq~~V~~~me~~~~p~Fl~S~~Y~~l  127 (128)
T d1agre_          91 MLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL  127 (128)
T ss_dssp             TTSCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTC
T ss_pred             hcCCChHHHHHHHHHHHHHHHhcccccccCCHHhhhc
Confidence            4579999999999999999999999999999999875

>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Galpha interacting protein, GaIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.9e-13  Score=81.54  Aligned_cols=38  Identities=71%  Similarity=1.170  Sum_probs=35.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHH
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   38 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll   38 (64)
                      +.+|++.+|+.||.+|+.+|+.|+||+|++|+.|+++|
T Consensus        91 ~~~~~~~~F~~aq~~V~~~l~~~~~p~Fl~S~~y~~lL  128 (128)
T d1cmza_          91 MQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALL  128 (128)
T ss_dssp             SSSCCTTSTHHHHHHHHHHHHHHTHHHHTTCHHHHTTC
T ss_pred             hcCCCHHHHHHHHHHHHHHHHhCcchhhccCHHHHHhC
Confidence            45789999999999999999999999999999999874

>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 18, RGS18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.6e-12  Score=79.42  Aligned_cols=40  Identities=43%  Similarity=0.801  Sum_probs=37.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhCcccchhccHHHHHHHHh
Q psy1249           1 MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL   40 (64)
Q Consensus         1 l~~P~~~~Fd~AQ~~Iy~LMe~DSYpRFLkS~~Y~~ll~~   40 (64)
                      +.+|++++|+.||.+|+.+|+.|+||+||+|+.|.++|+.
T Consensus        91 ~~~~~~~~F~~aq~~V~~~l~~~~yp~Fl~S~~y~~ll~~  130 (132)
T d2jm5a1          91 ITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLMEG  130 (132)
T ss_dssp             TTSCCTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTS
T ss_pred             hcCCCHHHHHHHHHHHHHHHHhhhhhhhccCHHHHHHHcc
Confidence            3578999999999999999999999999999999999873

>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Pdz-RhoGEF RGS-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.18  Score=31.98  Aligned_cols=21  Identities=14%  Similarity=0.056  Sum_probs=18.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhh
Q psy1249           2 VSPSNHTFDEAQLQIYTLMHR   22 (64)
Q Consensus         2 ~~P~~~~Fd~AQ~~Iy~LMe~   22 (64)
                      ++|.+.+|++||++|+.+|..
T Consensus        89 ee~~~~~F~~aQ~~v~~~i~~  109 (182)
T d1htjf_          89 SEDARGVLCEAQEAAMPEIQE  109 (182)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHH
Confidence            467899999999999999986