Psyllid ID: psy124

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNLAGGL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mipsgtpniliPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNLAGGL
Flexible Loop (DISEMBL)
mipsgtpniLIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNLAGGL
Low Complexity Region (SEG)
MIPSGtpnilipiiviieitrniirpiALAVRLTANLLASLVWLGDLKQRLDQLNLAGGL
Disordered region (IsUnstruct)
*******NILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD********
Disordered Region (DISOPRED)
*IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNLAGG*
Disordered Region (DISEMBL)
MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNLAGGL
Disordered Region (DISPRO)
**PSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNLAGGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	60	2.2.26 [Sep-21-2011]
P34834	226	ATP synthase subunit a OS	yes	N/A	0.65	0.172	0.564	6e-06
P33507	226	ATP synthase subunit a OS	N/A	N/A	0.65	0.172	0.564	7e-06
P50681	227	ATP synthase subunit a OS	N/A	N/A	0.65	0.171	0.615	7e-06
Q1HRS5	226	ATP synthase subunit a OS	N/A	N/A	0.65	0.172	0.564	8e-06
P41291	226	ATP synthase subunit a OS	N/A	N/A	0.65	0.172	0.589	1e-05
P00850	224	ATP synthase subunit a OS	yes	N/A	0.65	0.174	0.615	2e-05
Q96064	226	ATP synthase subunit a OS	N/A	N/A	0.65	0.172	0.589	2e-05
P00851	224	ATP synthase subunit a OS	N/A	N/A	0.65	0.174	0.615	2e-05
P50269	224	ATP synthase subunit a OS	N/A	N/A	0.65	0.174	0.615	2e-05
Q35538	237	ATP synthase subunit a OS	N/A	N/A	0.65	0.164	0.615	2e-05

>sp|P34834|ATP6_ANOGA ATP synthase subunit a OS=Anopheles gambiae GN=mt:ATPase6 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP +L+P +V IE   N+IRP  LAVRLTAN++A
Sbjct: 130 LVPQGTPPVLMPFMVCIETISNVIRPGTLAVRLTANMIA 168

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.
Anopheles gambiae (taxid: 7165)

>sp|P33507|ATP6_ANOQU ATP synthase subunit a OS=Anopheles quadrimaculatus GN=ATP6 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP +L+P +V IE   N+IRP  LAVRLTAN++A
Sbjct: 130 LVPQGTPPVLMPFMVCIETISNVIRPGTLAVRLTANMIA 168

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Anopheles quadrimaculatus (taxid: 7166)

>sp|P50681|ATP6_COTJA ATP synthase subunit a OS=Coturnix coturnix japonica GN=MT-ATP6 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP  LIPI+++IE T  +IRP+AL VRLTANL A
Sbjct: 129 LLPEGTPTPLIPILIMIETTSLLIRPLALGVRLTANLTA 167

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Coturnix coturnix japonica (taxid: 93934)

>sp|Q1HRS5|ATP6_AEDAE ATP synthase subunit a OS=Aedes aegypti GN=mt:ATPase6 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP +L+P +V IE   N+IRP  LAVRLTAN++A
Sbjct: 130 LVPQGTPPVLMPFMVCIETISNVIRPGTLAVRLTANMIA 168

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Aedes aegypti (taxid: 7159)

>sp|P41291|ATP6_BALMU ATP synthase subunit a OS=Balaenoptera musculus GN=MT-ATP6 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP  LIP++VIIE     I+P+ALAVRLTAN+ A
Sbjct: 128 LLPQGTPTFLIPMLVIIETISLFIQPVALAVRLTANITA 166

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Balaenoptera musculus (taxid: 9771)

>sp|P00850|ATP6_DROME ATP synthase subunit a OS=Drosophila melanogaster GN=mt:ATPase6 PE=3 SV=3

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP IL+P +V IE   NIIRP  LAVRLTAN++A
Sbjct: 129 LVPQGTPAILMPFMVCIETISNIIRPGTLAVRLTANMIA 167

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q96064|ATP6_RHIUN ATP synthase subunit a OS=Rhinoceros unicornis GN=MT-ATP6 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
            +P GTP  LIP++VIIE     I+P+ALAVRLTAN+ A
Sbjct: 128 FLPQGTPTFLIPMLVIIETISLFIQPVALAVRLTANITA 166

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Rhinoceros unicornis (taxid: 9809)

>sp|P00851|ATP6_DROYA ATP synthase subunit a OS=Drosophila yakuba GN=mt:ATPase6 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP IL+P +V IE   NIIRP  LAVRLTAN++A
Sbjct: 129 LVPQGTPAILMPFMVCIETISNIIRPGTLAVRLTANMIA 167

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Drosophila yakuba (taxid: 7245)

>sp|P50269|ATP6_DROSI ATP synthase subunit a OS=Drosophila simulans GN=mt:ATPase6 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP IL+P +V IE   NIIRP  LAVRLTAN++A
Sbjct: 129 LVPQGTPAILMPFMVCIETISNIIRPGTLAVRLTANMIA 167

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Drosophila simulans (taxid: 7240)

>sp|Q35538|ATP6_PETMA ATP synthase subunit a OS=Petromyzon marinus GN=MT-ATP6 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 29/39 (74%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP  LIP+++IIE     IRPIAL VRLTANL A
Sbjct: 129 LLPEGTPAALIPMLIIIETISLFIRPIALGVRLTANLTA 167

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Key component of the proton channel; it may play a direct role in the translocation of protons across the membrane.

Petromyzon marinus (taxid: 7757)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
77743930	178	ATP Synthetase subunit 6 [Maoricicada ma	0.65	0.219	0.692	8e-07
255506282	223	ATP synthase F0 subunit 6 [Mayetiola des	0.866	0.233	0.545	1e-06
435855633	225	ATP synthase F0 subunit 6 (mitochondrion	0.65	0.173	0.692	2e-06
51830067	224	ATP synthase F0 subunit 6 [Pachypsylla v	0.866	0.232	0.596	2e-06
408772059	225	ATP synthase F0 subunit 6 (mitochondrion	0.65	0.173	0.692	2e-06
237769738	225	ATP synthase F0 subunit 6 (mitochondrion	0.65	0.173	0.666	2e-06
299829149	225	ATP synthase F0 subunit 6 [Spilonota lec	0.65	0.173	0.692	2e-06
7920594	185	ATPase subunit 6 [Maoricicada iolanthe]	0.783	0.254	0.6	3e-06
77743999	185	ATP Synthetase subunit 6 [Maoricicada io	0.783	0.254	0.6	3e-06
195954015	225	atp6 [Ochrogaster lunifer] gi|195945445|	0.65	0.173	0.692	3e-06

>gi|77743930|gb|ABB02070.1| ATP Synthetase subunit 6 [Maoricicada mangu mangu]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 34/39 (87%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           M+PSGTPNIL+P +VIIE   N+IRP +LAVRLTAN++A
Sbjct: 127 MVPSGTPNILMPFMVIIESISNLIRPGSLAVRLTANMIA 165

Source: Maoricicada mangu mangu

Species: Maoricicada mangu

Genus: Maoricicada

Family: Cicadidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255506282|ref|YP_003097117.1| ATP synthase F0 subunit 6 [Mayetiola destructor] gi|254763552|gb|ACT80221.1| ATP synthase F0 subunit 6 [Mayetiola destructor]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 3/55 (5%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLAS---LVWLGDLKQRLD 52
           ++P GTPNILIP +V+IE   NIIRPI L VRLTAN++A    L  LG++  +L+
Sbjct: 129 LVPQGTPNILIPFMVLIESISNIIRPITLTVRLTANMIAGHLLLTLLGNMGPKLN 183

Source: Mayetiola destructor

Species: Mayetiola destructor

Genus: Mayetiola

Family: Cecidomyiidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|435855633|ref|YP_007316757.1| ATP synthase F0 subunit 6 (mitochondrion) [Choristoneura longicellana] gi|312284133|gb|ADQ63999.1| ATP synthase F0 subunit 6 [Choristoneura longicellana]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           MIP GTPNIL+P +V+IE   NIIRP  LAVRLTAN++A
Sbjct: 130 MIPQGTPNILMPFMVLIETISNIIRPGTLAVRLTANMIA 168

Source: Choristoneura longicellana

Species: Choristoneura longicellana

Genus: Choristoneura

Family: Tortricidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51830067|ref|YP_073287.1| ATP synthase F0 subunit 6 [Pachypsylla venusta] gi|37957987|gb|AAP14652.1| ATP synthase F0 subunit 6 [Pachypsylla venusta]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 43/52 (82%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD 52
           ++PSGTPNIL+P++VIIE+T NIIRP+AL+VRLTANL+A  + +  L   L+
Sbjct: 130 LVPSGTPNILMPLMVIIELTSNIIRPLALSVRLTANLIAGHLLMALLGNTLN 181

Source: Pachypsylla venusta

Species: Pachypsylla venusta

Genus: Pachypsylla

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|408772059|ref|YP_006883035.1| ATP synthase F0 subunit 6 (mitochondrion) [Acleris fimbriana] gi|316926264|gb|ADU58118.1| ATP synthase F0 subunit 6 [Acleris fimbriana]

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           MIP GTPNIL+P +V+IE   NIIRP  LAVRLTAN++A
Sbjct: 130 MIPQGTPNILMPFMVLIETISNIIRPGTLAVRLTANMIA 168

Source: Acleris fimbriana

Species: Acleris fimbriana

Genus: Acleris

Family: Tortricidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|237769738|dbj|BAH59371.1| ATP synthase F0 subunit 6 (mitochondrion) [Herona marathus]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 33/39 (84%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           MIP GTP+IL+P +V+IE   NIIRP+ LAVRLTAN++A
Sbjct: 130 MIPQGTPSILMPFMVLIETISNIIRPMTLAVRLTANMIA 168

Source: Herona marathus

Species: Herona marathus

Genus: Herona

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|299829149|ref|YP_003735160.1| ATP synthase F0 subunit 6 [Spilonota lechriaspis] gi|297747686|gb|ADI51562.1| ATP synthase F0 subunit 6 [Spilonota lechriaspis]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           MIP GTPNIL+P +V+IE   NIIRP  LAVRLTAN++A
Sbjct: 130 MIPQGTPNILMPFMVLIETISNIIRPGTLAVRLTANMIA 168

Source: Spilonota lechriaspis

Species: Spilonota lechriaspis

Genus: Spilonota

Family: Tortricidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|7920594|gb|AAF70744.1|AF248818_2 ATPase subunit 6 [Maoricicada iolanthe]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 39/50 (78%), Gaps = 3/50 (6%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLAS---LVWLGDL 47
           M+PSGTPNIL+P +VIIE   N+IRP +LAVRLTAN++A    +  LG+L
Sbjct: 127 MVPSGTPNILMPFMVIIESISNLIRPGSLAVRLTANMIAGHLLMTLLGNL 176

Source: Maoricicada iolanthe

Species: Maoricicada iolanthe

Genus: Maoricicada

Family: Cicadidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77743999|gb|ABB02116.1| ATP Synthetase subunit 6 [Maoricicada iolanthe]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 39/50 (78%), Gaps = 3/50 (6%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLAS---LVWLGDL 47
           M+PSGTPNIL+P +VIIE   N+IRP +LAVRLTAN++A    +  LG+L
Sbjct: 127 MVPSGTPNILMPFMVIIESISNLIRPGSLAVRLTANMIAGHLLMTLLGNL 176

Source: Maoricicada iolanthe

Species: Maoricicada iolanthe

Genus: Maoricicada

Family: Cicadidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195954015|ref|YP_002122316.1| atp6 [Ochrogaster lunifer] gi|195945445|emb|CAQ19283.1| atp6 [Ochrogaster lunifer]

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           MIP GTPNIL+P +V+IE   NIIRP  LAVRLTAN++A
Sbjct: 130 MIPQGTPNILMPFMVMIETISNIIRPGTLAVRLTANMIA 168

Source: Ochrogaster lunifer

Species: Ochrogaster lunifer

Genus: Ochrogaster

Family: Notodontidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3PRF6	ATP6_RHIE6	No assigned EC number	0.5348	0.7166	0.172	yes	N/A
C0RH93	ATP6_BRUMB	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A
Q1MKT2	ATP6_RHIL3	No assigned EC number	0.5348	0.7166	0.172	yes	N/A
P00847	ATP6_BOVIN	No assigned EC number	0.5897	0.65	0.1725	yes	N/A
A9M8F8	ATP6_BRUC2	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A
B9JA28	ATP6_AGRRK	No assigned EC number	0.5348	0.7166	0.172	yes	N/A
P14092	ATP6_CHICK	No assigned EC number	0.5897	0.65	0.1718	yes	N/A
P48662	ATP6_HORSE	No assigned EC number	0.5897	0.65	0.1725	yes	N/A
Q57EY0	ATP6_BRUAB	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A
B5ZS16	ATP6_RHILW	No assigned EC number	0.5348	0.7166	0.172	yes	N/A
P00850	ATP6_DROME	No assigned EC number	0.6153	0.65	0.1741	yes	N/A
A5VNW2	ATP6_BRUO2	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A
B0CK70	ATP6_BRUSI	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A
Q9T9W0	ATP6_PANTR	No assigned EC number	0.5897	0.65	0.1725	yes	N/A
Q2YM92	ATP6_BRUA2	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A
P34834	ATP6_ANOGA	No assigned EC number	0.5641	0.65	0.1725	yes	N/A
B2S9M8	ATP6_BRUA1	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A
Q8G2E1	ATP6_BRUSU	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A
Q35915	ATP6_PIG	No assigned EC number	0.5897	0.65	0.1725	yes	N/A
Q2KBW1	ATP6_RHIEC	No assigned EC number	0.5348	0.7166	0.172	yes	N/A
A6WW77	ATP61_OCHA4	No assigned EC number	0.5116	0.7166	0.1726	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	60
MTH00157	223	MTH00157, ATP6, ATP synthase F0 subunit 6; Provisi	1e-13
MTH00132	227	MTH00132, ATP6, ATP synthase F0 subunit 6; Provisi	1e-09
MTH00179	227	MTH00179, ATP6, ATP synthase F0 subunit 6; Provisi	2e-09
MTH00120	227	MTH00120, ATP6, ATP synthase F0 subunit 6; Provisi	3e-09
MTH00073	227	MTH00073, ATP6, ATP synthase F0 subunit 6; Provisi	5e-09
TIGR01131	226	TIGR01131, ATP_synt_6_or_A, ATP synthase subunit 6	3e-08
MTH00176	229	MTH00176, ATP6, ATP synthase F0 subunit 6; Provisi	4e-08
MTH00101	226	MTH00101, ATP6, ATP synthase F0 subunit 6; Validat	9e-08
MTH00173	231	MTH00173, ATP6, ATP synthase F0 subunit 6; Provisi	2e-07
MTH00035	229	MTH00035, ATP6, ATP synthase F0 subunit 6; Validat	2e-07
pfam00119	217	pfam00119, ATP-synt_A, ATP synthase A chain	3e-07
MTH00172	232	MTH00172, ATP6, ATP synthase F0 subunit 6; Provisi	6e-06
MTH00005	231	MTH00005, ATP6, ATP synthase F0 subunit 6; Provisi	1e-05
MTH00175	244	MTH00175, ATP6, ATP synthase F0 subunit 6; Provisi	3e-04
MTH00050	170	MTH00050, ATP6, ATP synthase F0 subunit 6; Validat	0.003
MTH00174	252	MTH00174, ATP6, ATP synthase F0 subunit 6; Provisi	0.004

>gnl|CDD|214441 MTH00157, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 61.3 bits (150), Expect = 1e-13
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP IL+P +V+IE   N+IRP  LAVRL AN++A
Sbjct: 128 LVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIA 166

Length = 223

>gnl|CDD|177190 MTH00132, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 50.6 bits (122), Expect = 1e-09
 Identities = 23/39 (58%), Positives = 29/39 (74%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP  LIP+++IIE     IRP+AL VRLTANL A
Sbjct: 129 LLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTA 167

Length = 227

>gnl|CDD|177230 MTH00179, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 50.3 bits (121), Expect = 2e-09
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP  LIP++V IE    +IRP+AL VRLTAN+ A
Sbjct: 129 LLPEGTPTPLIPMLVWIETISLLIRPLALGVRLTANITA 167

Length = 227

>gnl|CDD|177181 MTH00120, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 49.8 bits (120), Expect = 3e-09
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP  LIP +++IE    +IRP+AL VRLTANL A
Sbjct: 129 LLPEGTPTPLIPALILIETISLLIRPLALGVRLTANLTA 167

Length = 227

>gnl|CDD|177144 MTH00073, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 48.8 bits (117), Expect = 5e-09
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP +LIPI++IIE     IRP+AL VRLTANL A
Sbjct: 129 LLPEGTPTLLIPILIIIETISLFIRPLALGVRLTANLTA 167

Length = 227

>gnl|CDD|233283 TIGR01131, ATP_synt_6_or_A, ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)

 Score = 47.2 bits (113), Expect = 3e-08
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 3   PSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           PSGTP  LIP +VIIE    + RPI+L+VRL AN+ A
Sbjct: 132 PSGTPLPLIPFLVIIETISYLARPISLSVRLFANISA 168

Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process [Energy metabolism, ATP-proton motive force interconversion]. Length = 226

>gnl|CDD|214449 MTH00176, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 46.6 bits (111), Expect = 4e-08
 Identities = 23/45 (51%), Positives = 32/45 (71%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLG 45
           ++P GTP +L P +V+IE+   +IRP+ LAVRL ANL A  + LG
Sbjct: 131 LVPQGTPPLLNPFLVLIELVSLLIRPLTLAVRLAANLSAGHLLLG 175

Length = 229

>gnl|CDD|177163 MTH00101, ATP6, ATP synthase F0 subunit 6; Validated

 Score = 45.7 bits (109), Expect = 9e-08
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query: 2   IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           +P GTP  LIP++VIIE     I+P+ALAVRLTAN+ A
Sbjct: 129 LPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITA 166

Length = 226

>gnl|CDD|214448 MTH00173, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 44.9 bits (107), Expect = 2e-07
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P+G P  L P +V+IE    +IRP+ L VRL AN+ A
Sbjct: 131 LVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISA 169

Length = 231

>gnl|CDD|177110 MTH00035, ATP6, ATP synthase F0 subunit 6; Validated

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 20/39 (51%), Positives = 27/39 (69%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P GTP+ LIP++V IE      +PIAL +RL ANL A
Sbjct: 132 LVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLAANLTA 170

Length = 229

>gnl|CDD|109186 pfam00119, ATP-synt_A, ATP synthase A chain

 Score = 44.1 bits (105), Expect = 3e-07
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 2   IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           +P GTP  LIP +V IE+     RP++L +RL  N+LA
Sbjct: 123 VPPGTPLFLIPFLVPIELISLFARPLSLGLRLFGNILA 160

Length = 217

>gnl|CDD|214447 MTH00172, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 40.8 bits (96), Expect = 6e-06
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++PSG P  L P++V+IE    I R I+L VRL ANL A
Sbjct: 131 LMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSA 169

Length = 232

>gnl|CDD|164583 MTH00005, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLG 45
           ++P G P+ L P +V+IE    ++RPI L+ RL AN+ A  + L 
Sbjct: 133 LLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLS 177

Length = 231

>gnl|CDD|177228 MTH00175, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
           ++P G P +L P +V+IE    +IR I+L VRL AN+ A
Sbjct: 142 LMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISA 180

Length = 244

>gnl|CDD|177125 MTH00050, ATP6, ATP synthase F0 subunit 6; Validated

 Score = 32.9 bits (76), Expect = 0.003
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVR 32
            +P GTP  + P + I E    IIRP+ L +R
Sbjct: 82  FVPVGTPLYICPFVCIAETISYIIRPVVLILR 113

Length = 170

>gnl|CDD|133799 MTH00174, ATP6, ATP synthase F0 subunit 6; Provisional

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANL 37
           ++P G P  L P++ IIE    I R I+L VRL AN+
Sbjct: 150 LMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANI 186

Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
MTH00050	170	ATP6 ATP synthase F0 subunit 6; Validated	99.79
MTH00174	252	ATP6 ATP synthase F0 subunit 6; Provisional	99.77
MTH00073	227	ATP6 ATP synthase F0 subunit 6; Provisional	99.76
MTH00132	227	ATP6 ATP synthase F0 subunit 6; Provisional	99.76
MTH00179	227	ATP6 ATP synthase F0 subunit 6; Provisional	99.75
MTH00120	227	ATP6 ATP synthase F0 subunit 6; Provisional	99.75
MTH00005	231	ATP6 ATP synthase F0 subunit 6; Provisional	99.75
MTH00101	226	ATP6 ATP synthase F0 subunit 6; Validated	99.75
MTH00172	232	ATP6 ATP synthase F0 subunit 6; Provisional	99.75
MTH00035	229	ATP6 ATP synthase F0 subunit 6; Validated	99.74
MTH00176	229	ATP6 ATP synthase F0 subunit 6; Provisional	99.74
MTH00157	223	ATP6 ATP synthase F0 subunit 6; Provisional	99.74
TIGR01131	226	ATP_synt_6_or_A ATP synthase subunit 6 (eukaryotes	99.73
MTH00175	244	ATP6 ATP synthase F0 subunit 6; Provisional	99.73
MTH00173	231	ATP6 ATP synthase F0 subunit 6; Provisional	99.73
PF00119	215	ATP-synt_A: ATP synthase A chain; InterPro: IPR000	99.71
MTH00087	195	ATP6 ATP synthase F0 subunit 6; Provisional	99.65
PRK13417	352	F0F1 ATP synthase subunit A; Provisional	99.63
PRK13419	342	F0F1 ATP synthase subunit A; Provisional	99.63
KOG4665|consensus	252		99.6
PRK05815	227	F0F1 ATP synthase subunit A; Validated	99.52
TIGR03306	217	altF1_A alternate F1F0 ATPase, F0 subunit A. and i	99.48
COG0356	246	AtpB F0F1-type ATP synthase, subunit a [Energy pro	99.48
PRK13421	223	F0F1 ATP synthase subunit A; Provisional	99.47
CHL00046	228	atpI ATP synthase CF0 A subunit	99.45
PRK13420	226	F0F1 ATP synthase subunit A; Provisional	99.34

>MTH00050 ATP6 ATP synthase F0 subunit 6; Validated

Probab=99.79  E-value=3.6e-19  Score=118.17  Aligned_cols=52  Identities=29%  Similarity=0.356  Sum_probs=48.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|+|+|+++.|+++++|++|+++||+||++||+|||+|||.++.++++...
T Consensus        82 flP~G~P~~L~P~lv~IElIS~liRP~TL~iRLfaNm~AGHll~~ll~~~~~  133 (170)
T MTH00050         82 FVPVGTPLYICPFVCIAETISYIIRPVVLILRPFINISLGCFGGVALGNLCF  133 (170)
T ss_pred             hCCCCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999999999886544

>MTH00174 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.77  E-value=1.2e-18  Score=120.38  Aligned_cols=54  Identities=31%  Similarity=0.505  Sum_probs=50.3

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQL   54 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~~   54 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++|||+||+|||+++++++++.+.+
T Consensus       150 ~~P~g~P~~L~pllv~IE~iS~~~RpiSLslRLfaNm~AGhill~li~~~~~~~  203 (252)
T MTH00174        150 LMPQGAPLALAPLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKM  203 (252)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999998876543

>MTH00073 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.76  E-value=2.2e-18  Score=117.15  Aligned_cols=52  Identities=46%  Similarity=0.727  Sum_probs=48.6

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++...
T Consensus       129 ~~p~g~P~~l~p~m~~iE~is~~~RplsLs~RL~aNm~aGhill~ll~~~~~  180 (227)
T MTH00073        129 LLPEGTPTLLIPILIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATL  180 (227)
T ss_pred             hcCCCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999986543

>MTH00132 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.76  E-value=2.6e-18  Score=116.96  Aligned_cols=52  Identities=44%  Similarity=0.681  Sum_probs=48.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++..+
T Consensus       129 ~~p~g~P~~l~p~l~~iE~iS~~~RP~sL~~RL~aNm~AGhlll~l~~~~~~  180 (227)
T MTH00132        129 LLPEGTPTPLIPVLIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAF  180 (227)
T ss_pred             hcCCCChHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999987544

>MTH00179 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.75  E-value=3.4e-18  Score=116.26  Aligned_cols=52  Identities=42%  Similarity=0.667  Sum_probs=48.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..+
T Consensus       129 ~~p~G~P~~l~p~m~~iE~is~~~RplsL~~RL~aNi~aGh~ll~l~~~~~~  180 (227)
T MTH00179        129 LLPEGTPTPLIPMLVWIETISLLIRPLALGVRLTANITAGHLLMHLISSAVF  180 (227)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999987544

>MTH00120 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.75  E-value=3.9e-18  Score=115.83  Aligned_cols=51  Identities=43%  Similarity=0.705  Sum_probs=47.9

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL   51 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~   51 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..
T Consensus       129 ~~p~g~P~~l~p~m~~iE~is~~~RplsLs~RLfaNm~AGhlll~l~~~~~  179 (227)
T MTH00120        129 LLPEGTPTPLIPALILIETISLLIRPLALGVRLTANLTAGHLLIQLISTAT  179 (227)
T ss_pred             HcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999987653

>MTH00005 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.75  E-value=4.9e-18  Score=115.58  Aligned_cols=50  Identities=36%  Similarity=0.634  Sum_probs=47.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR   50 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~   50 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++.
T Consensus       133 ~~p~g~P~~l~p~l~~iE~is~~~RpisLs~RLf~Nm~aGhill~li~~~  182 (231)
T MTH00005        133 LLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGIY  182 (231)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999998754

>MTH00101 ATP6 ATP synthase F0 subunit 6; Validated

Probab=99.75  E-value=5.7e-18  Score=114.99  Aligned_cols=51  Identities=45%  Similarity=0.681  Sum_probs=48.0

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL   51 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~   51 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..
T Consensus       128 ~~p~g~P~~l~p~l~~iE~is~~~rp~sLs~RLf~Ni~aGhill~l~~~~~  178 (226)
T MTH00101        128 FLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGAT  178 (226)
T ss_pred             hCCCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999987653

>MTH00172 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.75  E-value=4.8e-18  Score=115.94  Aligned_cols=51  Identities=41%  Similarity=0.548  Sum_probs=48.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL   51 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~   51 (60)
                      ++|+|.|.++.|+++++|++|+++||+||++|||+||+|||+++.++++..
T Consensus       131 ~~p~g~P~~l~p~~~~iE~is~~~RpiSLs~RLf~Ni~aGhill~li~~~~  181 (232)
T MTH00172        131 LMPSGAPLGLAPLLVLIETVSYISRAISLGVRLAANLSAGHLLFAILAGFG  181 (232)
T ss_pred             hCCCCChHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999987654

>MTH00035 ATP6 ATP synthase F0 subunit 6; Validated

Probab=99.74  E-value=6.7e-18  Score=115.03  Aligned_cols=52  Identities=40%  Similarity=0.604  Sum_probs=48.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..+
T Consensus       132 ~~P~g~P~~L~p~m~~iE~is~~~RpisL~~RLf~Nm~aGhlll~l~~~~~~  183 (229)
T MTH00035        132 LVPQGTPSFLIPLMVWIETLSLFAQPIALGLRLAANLTAGHLLIFLLSTAIW  183 (229)
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999987644

>MTH00176 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.74  E-value=7.6e-18  Score=114.65  Aligned_cols=52  Identities=46%  Similarity=0.745  Sum_probs=48.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||++++++++..+
T Consensus       131 ~~p~g~P~~l~p~l~~iE~is~~~RplsLs~RLf~Ni~aGhill~li~~~~~  182 (229)
T MTH00176        131 LVPQGTPPLLNPFLVLIELVSLLIRPLTLAVRLAANLSAGHLLLGLLGAAMW  182 (229)
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999987653

>MTH00157 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.74  E-value=7.9e-18  Score=114.11  Aligned_cols=52  Identities=46%  Similarity=0.722  Sum_probs=48.7

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++...
T Consensus       128 ~~p~g~P~~l~p~l~~iE~is~~~rPisLs~RLf~Ni~aGhill~li~~~~~  179 (223)
T MTH00157        128 LVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLLTLLGNTGP  179 (223)
T ss_pred             HcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999999999999999999999987653

>TIGR01131 ATP_synt_6_or_A ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)

Probab=99.73  E-value=1e-17  Score=113.66  Aligned_cols=52  Identities=48%  Similarity=0.648  Sum_probs=48.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      +.|.|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++..+
T Consensus       130 ~~p~g~P~~l~p~m~~iE~is~~~rp~sLs~RLf~Ni~aGhill~li~~~~~  181 (226)
T TIGR01131       130 LVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGLLF  181 (226)
T ss_pred             HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999999999999999999999987543

The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process.

>MTH00175 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.73  E-value=1.6e-17  Score=114.06  Aligned_cols=52  Identities=37%  Similarity=0.571  Sum_probs=48.4

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|.|.|.++.|+++++|++|+++||+||++|||+||+|||+++.++++..+
T Consensus       142 ~~P~g~P~~l~p~l~~iE~is~~~rpisLs~RLf~Ni~aGhill~li~~~~~  193 (244)
T MTH00175        142 LMPGGAPLVLAPFLVLIETLSYLIRAISLGVRLAANISAGHLLFAILSGFAF  193 (244)
T ss_pred             hCCCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999976543

>MTH00173 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.73  E-value=1.5e-17  Score=113.24  Aligned_cols=51  Identities=39%  Similarity=0.635  Sum_probs=48.1

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL   51 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~   51 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++..
T Consensus       131 ~~p~g~p~~l~p~l~~iE~is~~~RplsL~lRLf~Nm~aGhill~l~~~~~  181 (231)
T MTH00173        131 LVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLANISAGHIVLTLIGNYL  181 (231)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999997653

>PF00119 ATP-synt_A: ATP synthase A chain; InterPro: IPR000568 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.71  E-value=5.1e-18  Score=112.97  Aligned_cols=53  Identities=38%  Similarity=0.636  Sum_probs=26.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQ   53 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~   53 (60)
                      ++|+|+|.++.|+++++|++|+++||+||++||++||+|||+++.++++..+.
T Consensus       123 ~~~~g~p~~l~p~~~~iE~is~~~RplsLs~RL~~Ni~aGhill~l~~~~~~~  175 (215)
T PF00119_consen  123 FVPPGTPLPLIPFMVPIELISELIRPLSLSLRLFGNIFAGHILLSLLSGFIWS  175 (215)
T ss_dssp             ---------------------TTHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             cCCCCCCcchhhhhhHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence            47999999999999999999999999999999999999999999999976554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit A (or subunit 6) found in the F0 complex of F-ATPases. This subunit is a key component of the proton channel, and may play a direct role in the translocation of protons across the membrane. Catalysis in the F1 complex depends upon the rotation of the central stalk and F0 c-ring, which in turn is driven by the flux of protons through the membrane via the interface between the F0 c-ring and subunit A. The peripheral stalk links subunit A to the external surface of the F1 domain, and is thought to act as a stator to counter the tendency of subunit A and the F1 alpha(3)beta(3) catalytic portion to rotate with the central rotary element []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1ED3_C 1C17_M.

>MTH00087 ATP6 ATP synthase F0 subunit 6; Provisional

Probab=99.65  E-value=4.3e-16  Score=104.75  Aligned_cols=49  Identities=29%  Similarity=0.504  Sum_probs=46.3

Q ss_pred             CCCCCCchHHHHH-HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPI-IVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQ   49 (60)
Q Consensus         1 ~~P~G~p~~l~p~-~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~   49 (60)
                      +.|+|.|.++.|+ ++++|++|+++||+||++||++||+|||+++.++..
T Consensus       109 ~~p~g~P~~L~~~~m~~iEiiS~l~RPlsLslRLf~Ni~aGhlil~li~~  158 (195)
T MTH00087        109 YLSKGSDSFLKTFSMLFVEIVSELSRPLALTLRLTVNLMVGHLISSLLNF  158 (195)
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999998 999999999999999999999999999999999865

>PRK13417 F0F1 ATP synthase subunit A; Provisional

Probab=99.63  E-value=4.9e-16  Score=112.02  Aligned_cols=52  Identities=33%  Similarity=0.452  Sum_probs=46.8

Q ss_pred             CCCCCCchHHHHHHHHHHHH-HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH
Q psy124            1 MIPSGTPNILIPIIVIIEIT-RNIIRPIALAVRLTANLLASLVWLGDLKQRLD   52 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~i-s~~~RPlsL~lRL~~N~~aG~il~~li~~~~~   52 (60)
                      ++|+|.|.++.|+++++|++ |+++||+||++|||+||+|||+++..+.++++
T Consensus       252 ~~p~g~P~~l~P~m~pIEliis~~~RPiSLslRLFgNI~AGhill~~l~~~i~  304 (352)
T PRK13417        252 SVPNGVPLLLYPIMWPLEFIVSPMAKTFALTVRLLANMTAGHVIILALMGFIF  304 (352)
T ss_pred             hCCCCCchhHHHHHHHHHHHHHHhhcchhHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            36899999999999999985 99999999999999999999999987765543

>PRK13419 F0F1 ATP synthase subunit A; Provisional

Probab=99.63  E-value=6.9e-16  Score=110.91  Aligned_cols=48  Identities=33%  Similarity=0.365  Sum_probs=44.5

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q psy124            2 IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQ   49 (60)
Q Consensus         2 ~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~   49 (60)
                      .|+|+|+++.|+++++|++|+++||+||++|||+||+|||+++..+.+
T Consensus       231 l~~g~p~~L~p~mvpIEiIS~~~RPiSLslRLFaNm~AGhill~~L~~  278 (342)
T PRK13419        231 LTGGTHWSLWIIMIPIEFIGLFTKPFALTVRLFANMTAGHIVILSLIF  278 (342)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhHHHHHHHHH
Confidence            478999999999999999999999999999999999999999876554

>KOG4665|consensus

Probab=99.60  E-value=1.7e-15  Score=105.39  Aligned_cols=57  Identities=44%  Similarity=0.668  Sum_probs=53.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q psy124            1 MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQLNLA   57 (60)
Q Consensus         1 ~~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~~~~~   57 (60)
                      ++|+|+|.++.|+++.+|++|+++||.+|++|+.+||.|||.++.++++..+.+...
T Consensus       150 f~p~Gtp~pL~p~lvlIE~iS~~~r~lsL~vRL~aNi~aGHLl~~iL~~~~~~~m~~  206 (252)
T KOG4665|consen  150 FLPAGTPLPLIPFLVLIETISYLIRPLSLGVRLTANILAGHLLMNILGGLLFTMMLM  206 (252)
T ss_pred             ECCCCCccchhHHHHHHHHHHHHhcchhhHhHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999998877653

>PRK05815 F0F1 ATP synthase subunit A; Validated

Probab=99.52  E-value=3.5e-14  Score=96.55  Aligned_cols=39  Identities=36%  Similarity=0.550  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124           12 PIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR   50 (60)
Q Consensus        12 p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~   50 (60)
                      |+++++|++|+++||+||++|||+||+|||+++.+++..
T Consensus       140 p~m~piE~is~~~rpisLs~RLf~Ni~aGhiil~l~~~~  178 (227)
T PRK05815        140 PLLLPIEIISEFSRPISLSLRLFGNMLAGELILALIALL  178 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999543

>TIGR03306 altF1_A alternate F1F0 ATPase, F0 subunit A

Probab=99.48  E-value=8.1e-14  Score=94.58  Aligned_cols=40  Identities=30%  Similarity=0.432  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124           11 IPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR   50 (60)
Q Consensus        11 ~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~   50 (60)
                      .|+++++|++|+++||+||++||||||+|||+++.++++.
T Consensus       141 ~p~m~pieiis~~~rpiSLs~RLfaNm~AGhill~l~~~~  180 (217)
T TIGR03306       141 TPFMLPFNIIGELSRTLALAVRLFGNMMSGSMILAILLSI  180 (217)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999998754

and in principle may run in either direction. This model represents the F0 subunit A of this apparent second ATP synthase.

>COG0356 AtpB F0F1-type ATP synthase, subunit a [Energy production and conversion]

Probab=99.48  E-value=8.4e-14  Score=96.57  Aligned_cols=45  Identities=29%  Similarity=0.533  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy124           10 LIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRLDQL   54 (60)
Q Consensus        10 l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~~~~   54 (60)
                      +.|++.++|++|+++||+||++|||+||+|||+++.+++++....
T Consensus       158 ~~pl~~~~eiis~~a~piSLslRLFGNi~AG~iil~lia~~~~~~  202 (246)
T COG0356         158 LAPLMLPLEIVSELAKPISLSLRLFGNILAGEILLALIAGLVPYF  202 (246)
T ss_pred             cchhhhHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999876554

>PRK13421 F0F1 ATP synthase subunit A; Provisional

Probab=99.47  E-value=8.5e-14  Score=94.81  Aligned_cols=39  Identities=18%  Similarity=0.376  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124           12 PIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR   50 (60)
Q Consensus        12 p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~   50 (60)
                      |+++++|++|+++||+||++||||||+|||+++.++++.
T Consensus       143 ~lm~pie~is~~~rpiSLs~RLfaNi~AGhill~li~~~  181 (223)
T PRK13421        143 WVMIPLNLVEQLTRTFSLIVRLFGNVMSGVFVIGIVLSL  181 (223)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999999999999998654

>CHL00046 atpI ATP synthase CF0 A subunit

Probab=99.45  E-value=1.8e-13  Score=93.61  Aligned_cols=40  Identities=30%  Similarity=0.497  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124           11 IPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR   50 (60)
Q Consensus        11 ~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~   50 (60)
                      .|++.++|++|+++||+||++|||+||+|||+++.+++..
T Consensus       155 ~p~m~pie~is~~~rpiSLslRLfgNi~aGhill~li~~~  194 (228)
T CHL00046        155 TPILLPINILEDFTKPLSLSFRLFGNILADELVVAVLVSL  194 (228)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999998754

>PRK13420 F0F1 ATP synthase subunit A; Provisional

Probab=99.34  E-value=2.1e-12  Score=88.17  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q psy124           12 PIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQ   49 (60)
Q Consensus        12 p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~   49 (60)
                      |++.|+|++|+++||+||++||||||+|||+++.++..
T Consensus       140 ~~L~Pi~iis~~~rPiSLslRLfaNi~AG~ii~~l~~~  177 (226)
T PRK13420        140 PFLLPFHLISEITRTLALAVRLFGNIMSLELAALLVLL  177 (226)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHhHhHHHHHHHHH
Confidence            67888999999999999999999999999998887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	60
1c17_M	177	ATP synthase subunit A; membrane protein, helix, c	6e-06

>1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR {Escherichia coli} SCOP: f.18.1.1 Length = 177

 Score = 39.6 bits (93), Expect = 6e-06
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
            +        IP+ +I+E    + +P++L +RL  N+ A
Sbjct: 85  TLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYA 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	60
1c17_M	177	ATP synthase subunit A; membrane protein, helix, c	99.7

>1c17_M ATP synthase subunit A; membrane protein, helix, complex; NMR {Escherichia coli} SCOP: f.18.1.1

Probab=99.70  E-value=5.2e-18  Score=111.01  Aligned_cols=48  Identities=23%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q psy124            2 IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQR   50 (60)
Q Consensus         2 ~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~   50 (60)
                      .|.|+| ++.|+++++|++|+++||+||++|||+||+|||+++.++++.
T Consensus        87 ~P~g~p-~L~P~~v~iE~is~~~RP~sL~~RLfaNm~AGhlll~li~~~  134 (177)
T 1c17_M           87 QPFNHW-AFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGL  134 (177)
T ss_dssp             -------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcc-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588888 999999999999999999999999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	60
d1c17m_	171	f.18.1.1 (M:) F1F0 ATP synthase subunit A {Escheri	0.003

>d1c17m_ f.18.1.1 (M:) F1F0 ATP synthase subunit A {Escherichia coli [TaxId: 562]} Length = 171

class: Membrane and cell surface proteins and peptides
fold: F1F0 ATP synthase subunit A
superfamily: F1F0 ATP synthase subunit A
family: F1F0 ATP synthase subunit A
domain: F1F0 ATP synthase subunit A
species: Escherichia coli [TaxId: 562]

 Score = 31.4 bits (71), Expect = 0.003
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 1   MIPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLA 39
            +        IP+ +I+E    + +P++L +RL  N+ A
Sbjct: 85  TLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	60
d1c17m_	171	F1F0 ATP synthase subunit A {Escherichia coli [Tax	99.6

>d1c17m_ f.18.1.1 (M:) F1F0 ATP synthase subunit A {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: F1F0 ATP synthase subunit A
superfamily: F1F0 ATP synthase subunit A
family: F1F0 ATP synthase subunit A
domain: F1F0 ATP synthase subunit A
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.3e-16  Score=102.22  Aligned_cols=50  Identities=22%  Similarity=0.290  Sum_probs=29.1

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy124            2 IPSGTPNILIPIIVIIEITRNIIRPIALAVRLTANLLASLVWLGDLKQRL   51 (60)
Q Consensus         2 ~P~G~p~~l~p~~~~iE~is~~~RPlsL~lRL~~N~~aG~il~~li~~~~   51 (60)
                      .|+|.|+++.|++.++|++|+++||+||++|||+||+|||+++.++.+..
T Consensus        86 ~~~~~~~~l~p~~~~ie~is~~~rpvSLslRLFgNm~AG~ill~l~~~~~  135 (171)
T d1c17m_          86 LQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLL  135 (171)
T ss_dssp             -------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999988753