Psyllid ID: psy1250

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MIFCTKRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARKSSNAT
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHcccccccccccccccccHHccccc
Coil and Loop (DISEMBL)
mifctkragrrgnvqsskrraarpyintkqSFKVSLDSRVREIVNrnmvspsnhtfdEAQLQIYTLMhrdsyprfiNSTVYKQLAqldsspgdtggnsdsstparkssnat
Flexible Loop (DISEMBL)
mifctkragrrgnvqsskrraarpyintkqsfkvsldsRVREIVNrnmvspsnhtfDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLdsspgdtggnsdsstparkssnat
Low Complexity Region (SEG)
MIFCTKRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARKSSNAT
Disordered region (IsUnstruct)
*****************************************EIVN********HTFDEAQLQIYTLMHRDSYPRFINSTVYKQL***************************
Disordered Region (DISOPRED)
MIFCTK*AG******SS**RAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK*****************************
Disordered Region (DISEMBL)
*********************ARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL************************
Disordered Region (DISPRO)
MIFCTKRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD***********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFCTKRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSSTPARKSSNAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q9QZB1	239	Regulator of G-protein si	no	N/A	0.711	0.330	0.607	1e-22
O76081	388	Regulator of G-protein si	no	N/A	0.774	0.221	0.538	8e-22
Q9PWA1	218	Regulator of G-protein si	yes	N/A	0.711	0.362	0.569	2e-21
Q9PWA0	210	Regulator of G-protein si	no	N/A	0.729	0.385	0.493	8e-19
P79348	374	Regulator of G-protein si	no	N/A	0.711	0.211	0.531	1e-18
Q9QZB0	210	Regulator of G-protein si	no	N/A	0.729	0.385	0.481	6e-18
Q9UGC6	210	Regulator of G-protein si	no	N/A	0.810	0.428	0.437	6e-18
O70521	216	Regulator of G-protein si	no	N/A	0.540	0.277	0.65	2e-17
Q9CX84	216	Regulator of G-protein si	no	N/A	0.540	0.277	0.65	2e-17
P49795	217	Regulator of G-protein si	no	N/A	0.540	0.276	0.633	4e-17

>sp|Q9QZB1|RGS20_MOUSE Regulator of G-protein signaling 20 OS=Mus musculus GN=Rgs20 PE=1 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 57/79 (72%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           KR   +  ++   R     YI+     +VSLDSRVRE++NRNMV PS H FD+AQLQIYT
Sbjct: 150 KREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDPSQHIFDDAQLQIYT 209

Query: 66  LMHRDSYPRFINSTVYKQL 84
           LMHRDSYPRF+NSTVYK L
Sbjct: 210 LMHRDSYPRFMNSTVYKDL 228

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.
Mus musculus (taxid: 10090)

>sp|O76081|RGS20_HUMAN Regulator of G-protein signaling 20 OS=Homo sapiens GN=RGS20 PE=1 SV=4

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 5/91 (5%)

Query: 1   MIFCT-----KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHT 55
           M+F       K+   +  ++   R     YI+     +VSLDSRVRE++NRNMV PS H 
Sbjct: 289 MLFWMACEELKKEANKNIIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHI 348

Query: 56  FDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 86
           FD+AQLQIYTLMHRDSYPRF+NS VYK L Q
Sbjct: 349 FDDAQLQIYTLMHRDSYPRFMNSAVYKDLLQ 379

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Homo sapiens (taxid: 9606)

>sp|Q9PWA1|RGS20_CHICK Regulator of G-protein signaling 20 OS=Gallus gallus GN=RGS20 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 57/79 (72%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  ++   R     YI+     +VSLDSRVRE++NRNM+ PS HTFD+AQLQIYT
Sbjct: 129 KQESNKSVIEEKARLIYEDYISILSPKEVSLDSRVREVINRNMLEPSQHTFDDAQLQIYT 188

Query: 66  LMHRDSYPRFINSTVYKQL 84
           LMHRDSYPRF+NS +YK L
Sbjct: 189 LMHRDSYPRFMNSAIYKDL 207

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Gallus gallus (taxid: 9031)

>sp|Q9PWA0|RGS17_CHICK Regulator of G-protein signaling 17 OS=Gallus gallus GN=RGS17 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 57/81 (70%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  ++   R     YI+     +VSLDSRVRE++NRN++ PS H +++AQLQIYT
Sbjct: 121 KKEQNKKVIEEKARLIYEDYISILSPKEVSLDSRVREVINRNLLDPSPHMYEDAQLQIYT 180

Query: 66  LMHRDSYPRFINSTVYKQLAQ 86
           LMHRDS+PRF+NS +YK L +
Sbjct: 181 LMHRDSFPRFLNSQIYKSLVE 201

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Gallus gallus (taxid: 9031)

>sp|P79348|RGS20_BOVIN Regulator of G-protein signaling 20 OS=Bos taurus GN=RGS20 PE=1 SV=2

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 54/79 (68%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  ++   R     YI+     +VSLDSRVRE +NR+M  PS + FD+AQLQIYT
Sbjct: 285 KKEANKATIEEKARIIYEDYISILSPKEVSLDSRVRETINRSMAEPSRNIFDDAQLQIYT 344

Query: 66  LMHRDSYPRFINSTVYKQL 84
           LMHRDSYPRF+NS +YK L
Sbjct: 345 LMHRDSYPRFMNSALYKDL 363

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Bos taurus (taxid: 9913)

>sp|Q9QZB0|RGS17_MOUSE Regulator of G-protein signaling 17 OS=Mus musculus GN=Rgs17 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  V+   R     YI+     +VSLDSRVRE++NR+++ PS H +++AQLQIYT
Sbjct: 121 KKEQNKKAVEEKARMIYEDYISILSPKEVSLDSRVREVINRSLLDPSPHMYEDAQLQIYT 180

Query: 66  LMHRDSYPRFINSTVYKQLAQ 86
           LMHRDS+PRF+NS +YK   +
Sbjct: 181 LMHRDSFPRFLNSQIYKAFVE 201

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Mus musculus (taxid: 10090)

>sp|Q9UGC6|RGS17_HUMAN Regulator of G-protein signaling 17 OS=Homo sapiens GN=RGS17 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 61/96 (63%), Gaps = 6/96 (6%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  ++   R     YI+     +VSLDSRVRE++NRN++ P+ H +++AQLQIYT
Sbjct: 121 KKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYT 180

Query: 66  LMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSS 101
           LMHRDS+PRF+NS +YK   +       T G+S  S
Sbjct: 181 LMHRDSFPRFLNSQIYKSFVE------STAGSSSES 210

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds selectively to G(z)-alpha and G(alpha)-i2 subunits, accelerates their GTPase activity and regulates their signaling activities. The G(z)-alpha activity is inhibited by the phosphorylation and palmitoylation of the G-protein. Negatively regulates mu-opioid receptor-mediated activation of the G-proteins.

Homo sapiens (taxid: 9606)

>sp|O70521|RGS19_RAT Regulator of G-protein signaling 19 OS=Rattus norvegicus GN=Rgs19 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 46/60 (76%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           Y++     +VSLDSRVRE +NR M  PS HTFD+AQLQIYTLMHRDSYPRF+ S  Y+ L
Sbjct: 146 YVSILSPKEVSLDSRVREGINRKMQEPSPHTFDDAQLQIYTLMHRDSYPRFLTSPTYRSL 205

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to G-alpha subfamily 1 members, predominantly to G(i)-alpha-3. Activity on G(z)-alpha is inhibited by phosphorylation and palmitoylation of the G-protein.

Rattus norvegicus (taxid: 10116)

>sp|Q9CX84|RGS19_MOUSE Regulator of G-protein signaling 19 OS=Mus musculus GN=Rgs19 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 46/60 (76%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           Y++     +VSLDSRVRE +NR M  PS HTFD+AQLQIYTLMHRDSYPRF+ S  Y+ L
Sbjct: 146 YVSILSPKEVSLDSRVREGINRKMQEPSPHTFDDAQLQIYTLMHRDSYPRFLTSPTYRSL 205

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to G-alpha subfamily 1 members, with the order G(i)a3 > G(i)a1 > G(o)a >> G(z)a/G(i)a2. Activity on G(z)-alpha is inhibited by phosphorylation and palmitoylation of the G-protein.

Mus musculus (taxid: 10090)

>sp|P49795|RGS19_HUMAN Regulator of G-protein signaling 19 OS=Homo sapiens GN=RGS19 PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           Y++     +VSLDSRVRE +N+ M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+ L
Sbjct: 146 YVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 205

Inhibits signal transduction by increasing the GTPase activity of G protein alpha subunits thereby driving them into their inactive GDP-bound form. Binds to G-alpha subfamily 1 members, with the order G(i)a3 > G(i)a1 > G(o)a >> G(z)a/G(i)a2. Activity on G(z)-alpha is inhibited by phosphorylation and palmitoylation of the G-protein.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
328781812	305	PREDICTED: hypothetical protein LOC72628	0.747	0.272	0.630	2e-23
240998044	181	regulator of G protein signaling 17, 19,	0.648	0.397	0.684	2e-23
380025005	301	PREDICTED: uncharacterized protein LOC10	0.747	0.275	0.619	1e-22
307209078	317	Regulator of G-protein signaling 20 [Har	0.882	0.309	0.545	3e-22
427792251	437	Putative termination of g-protein couple	0.585	0.148	0.723	6e-22
195436467	273	GK22228 [Drosophila willistoni] gi|19416	0.792	0.322	0.584	7e-22
194755737	276	GF11676 [Drosophila ananassae] gi|190621	0.864	0.347	0.546	1e-21
281363605	274	CG5036 [Drosophila melanogaster] gi|1786	0.792	0.321	0.584	2e-21
195335404	271	GM21826 [Drosophila sechellia] gi|195584	0.792	0.324	0.584	2e-21
194880885	273	GG21825 [Drosophila erecta] gi|190657770	0.792	0.322	0.584	2e-21

>gi|328781812|ref|XP_001122035.2| PREDICTED: hypothetical protein LOC726284 [Apis mellifera]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           YI+T    +VSLDSRVREIVNRNMV P+ HTFDEAQLQIYTLMHRDSYPRF+NS +Y+++
Sbjct: 221 YISTVSEKEVSLDSRVREIVNRNMVQPTPHTFDEAQLQIYTLMHRDSYPRFVNSELYRRV 280

Query: 85  AQLDSSPGDTGGNSDSSTPARKSS 108
           A+L  S G+ G      + ARK +
Sbjct: 281 ARLGCS-GEAGNQEQGKSKARKGT 303

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240998044|ref|XP_002404702.1| regulator of G protein signaling 17, 19, putative [Ixodes scapularis] gi|215491646|gb|EEC01287.1| regulator of G protein signaling 17, 19, putative [Ixodes scapularis]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 63/76 (82%), Gaps = 4/76 (5%)

Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           +Q+S R+       T Q+FKVSLDSRVREI+NRNMV P+ HTFDEAQLQIYTLMHRDSYP
Sbjct: 102 IQASLRK----LTETCQAFKVSLDSRVREIINRNMVEPTPHTFDEAQLQIYTLMHRDSYP 157

Query: 74  RFINSTVYKQLAQLDS 89
           RF+NS ++++LAQL S
Sbjct: 158 RFVNSPLFRKLAQLPS 173

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025005|ref|XP_003696273.1| PREDICTED: uncharacterized protein LOC100872018 [Apis florea]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           YI+T    +VSLDSRVREIVNRNMV P+ HTFDEAQLQIYTLMHRDSYPRF+NS +Y+++
Sbjct: 218 YISTVSEKEVSLDSRVREIVNRNMVQPTPHTFDEAQLQIYTLMHRDSYPRFVNSELYRRV 277

Query: 85  AQLDSSPGDTGGNSDSSTPARKSS 108
           A+L  S G  G      + A+K +
Sbjct: 278 ARLGCSGG-AGNQEQGKSKAKKGA 300

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209078|gb|EFN86245.1| Regulator of G-protein signaling 20 [Harpegnathos saltator]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           ++   R     YI+     +VSLDS+VREIVNRNMV P+ HTFDEAQLQIYTLMHRDSYP
Sbjct: 219 IEEKARYIYEDYISILSPKEVSLDSQVREIVNRNMVEPTPHTFDEAQLQIYTLMHRDSYP 278

Query: 74  RFINSTVYKQLAQLDS-SPGDTGGNSDSSTPARKSSNAT 111
           RF+NS +Y+++A+L+S SP  + G   SS  ++    AT
Sbjct: 279 RFVNSEIYRRVARLNSGSPSPSTGQEHSSGKSKGKRGAT 317

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427792251|gb|JAA61577.1| Putative termination of g-protein coupled receptor signaling pathway, partial [Rhipicephalus pulchellus]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 56/65 (86%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           YI+     +VSLDSRVREI+NRNMV P+ HTFDEAQLQIYTLMHRDSYPRF+NS ++++L
Sbjct: 365 YISILSPKEVSLDSRVREIINRNMVEPTPHTFDEAQLQIYTLMHRDSYPRFVNSPLFRKL 424

Query: 85  AQLDS 89
           AQL S
Sbjct: 425 AQLPS 429

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195436467|ref|XP_002066189.1| GK22228 [Drosophila willistoni] gi|194162274|gb|EDW77175.1| GK22228 [Drosophila willistoni]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%), Gaps = 1/89 (1%)

Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           V+   R     YI+     +VSLDSRVREIVNRNM+ P+ HTFDEAQ+QIYTLMHRDSYP
Sbjct: 186 VEEKARLIYEDYISILSPREVSLDSRVREIVNRNMIEPTTHTFDEAQIQIYTLMHRDSYP 245

Query: 74  RFINSTVYKQLAQLDSSPGDTGGNSDSST 102
           RF+NS  +K LAQ+  +  + G N+DS T
Sbjct: 246 RFLNSQKFKTLAQMQDN-SNAGSNADSPT 273

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194755737|ref|XP_001960140.1| GF11676 [Drosophila ananassae] gi|190621438|gb|EDV36962.1| GF11676 [Drosophila ananassae]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 66/97 (68%), Gaps = 1/97 (1%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+ G    V+   R     YI+     +VSLDSRVREIVNRNM+ P+ HTFDEAQ+QIYT
Sbjct: 181 KKEGSAEVVEEKARLIYEDYISILSPREVSLDSRVREIVNRNMIEPTTHTFDEAQIQIYT 240

Query: 66  LMHRDSYPRFINSTVYKQLAQLDSSPGDTGGNSDSST 102
           LMHRDSYPRF+NS  ++ LAQL  +  + G  +DS T
Sbjct: 241 LMHRDSYPRFLNSQKFRTLAQLQDN-SNAGSKADSPT 276

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281363605|ref|NP_611271.3| CG5036 [Drosophila melanogaster] gi|17862594|gb|AAL39774.1| LD40005p [Drosophila melanogaster] gi|272432532|gb|AAF57785.2| CG5036 [Drosophila melanogaster]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 63/89 (70%), Gaps = 1/89 (1%)

Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           V+   R     YI+     +VSLDSRVREIVNRNM+ P+ HTFDEAQ+QIYTLMHRDSYP
Sbjct: 187 VEEKARLIYEDYISILSPREVSLDSRVREIVNRNMIEPTTHTFDEAQIQIYTLMHRDSYP 246

Query: 74  RFINSTVYKQLAQLDSSPGDTGGNSDSST 102
           RF+NS  +K LAQL  +  + G  +DS T
Sbjct: 247 RFLNSQKFKTLAQLQDN-SNAGSKADSPT 274

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195335404|ref|XP_002034355.1| GM21826 [Drosophila sechellia] gi|195584395|ref|XP_002081992.1| GD11319 [Drosophila simulans] gi|194126325|gb|EDW48368.1| GM21826 [Drosophila sechellia] gi|194194001|gb|EDX07577.1| GD11319 [Drosophila simulans]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 63/89 (70%), Gaps = 1/89 (1%)

Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           V+   R     YI+     +VSLDSRVREIVNRNM+ P+ HTFDEAQ+QIYTLMHRDSYP
Sbjct: 184 VEEKARLIYEDYISILSPREVSLDSRVREIVNRNMIEPTTHTFDEAQIQIYTLMHRDSYP 243

Query: 74  RFINSTVYKQLAQLDSSPGDTGGNSDSST 102
           RF+NS  +K LAQL  +  + G  +DS T
Sbjct: 244 RFLNSQKFKTLAQLQDN-SNAGSKADSPT 271

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194880885|ref|XP_001974583.1| GG21825 [Drosophila erecta] gi|190657770|gb|EDV54983.1| GG21825 [Drosophila erecta]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 63/89 (70%), Gaps = 1/89 (1%)

Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           V+   R     YI+     +VSLDSRVREIVNRNM+ P+ HTFDEAQ+QIYTLMHRDSYP
Sbjct: 186 VEEKARLIYEDYISILSPREVSLDSRVREIVNRNMIEPTTHTFDEAQIQIYTLMHRDSYP 245

Query: 74  RFINSTVYKQLAQLDSSPGDTGGNSDSST 102
           RF+NS  +K LAQL  +  + G  +DS T
Sbjct: 246 RFLNSQKFKTLAQLQDN-SNAGSKADSPT 273

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0028743	274	CG5036 [Drosophila melanogaste	0.792	0.321	0.584	3.4e-22
MGI|MGI:1929866	239	Rgs20 "regulator of G-protein	0.711	0.330	0.607	1.9e-21
RGD|1586146	242	Rgs20 "regulator of G-protein	0.711	0.326	0.607	1.9e-21
UNIPROTKB|B3KSW4	122	RGS20 "Regulator of G-protein-	0.729	0.663	0.580	1e-20
UNIPROTKB|F1NIN7	219	RGS20 "Regulator of G-protein-	0.711	0.360	0.569	1.7e-20
UNIPROTKB|Q9PWA1	218	RGS20 "Regulator of G-protein	0.711	0.362	0.569	1.7e-20
UNIPROTKB|O76081	388	RGS20 "Regulator of G-protein	0.729	0.208	0.580	1.8e-20
UNIPROTKB|E2RH78	381	RGS20 "Uncharacterized protein	0.729	0.212	0.567	3.5e-20
ZFIN|ZDB-GENE-040718-128	293	rgs20 "regulator of G-protein	0.711	0.269	0.544	4e-19
UNIPROTKB|F1NJM4	180	RGS19 "Uncharacterized protein	0.477	0.294	0.773	8.3e-19

FB|FBgn0028743 CG5036 [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 52/89 (58%), Positives = 63/89 (70%)

Query:    14 VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
             V+   R     YI+     +VSLDSRVREIVNRNM+ P+ HTFDEAQ+QIYTLMHRDSYP
Sbjct:   187 VEEKARLIYEDYISILSPREVSLDSRVREIVNRNMIEPTTHTFDEAQIQIYTLMHRDSYP 246

Query:    74 RFINSTVYKQLAQLDSSPGDTGGNSDSST 102
             RF+NS  +K LAQL  +  + G  +DS T
Sbjct:   247 RFLNSQKFKTLAQLQDN-SNAGSKADSPT 274

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=ISS

GO:0005096 "GTPase activator activity" evidence=ISS;IBA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

MGI|MGI:1929866 Rgs20 "regulator of G-protein signaling 20" [Mus musculus (taxid:10090)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/79 (60%), Positives = 57/79 (72%)

Query:     6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
             KR   +  ++   R     YI+     +VSLDSRVRE++NRNMV PS H FD+AQLQIYT
Sbjct:   150 KREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDPSQHIFDDAQLQIYT 209

Query:    66 LMHRDSYPRFINSTVYKQL 84
             LMHRDSYPRF+NSTVYK L
Sbjct:   210 LMHRDSYPRFMNSTVYKDL 228

GO:0005096 "GTPase activator activity" evidence=IBA;TAS

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0005886 "plasma membrane" evidence=IBA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

RGD|1586146 Rgs20 "regulator of G-protein signaling 20" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/79 (60%), Positives = 57/79 (72%)

Query:     6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
             KR   +  ++   R     YI+     +VSLDSRVRE++NRNMV PS H FD+AQLQIYT
Sbjct:   153 KREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDPSQHIFDDAQLQIYT 212

Query:    66 LMHRDSYPRFINSTVYKQL 84
             LMHRDSYPRF+NSTVYK L
Sbjct:   213 LMHRDSYPRFMNSTVYKDL 231

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IBA

UNIPROTKB|B3KSW4 RGS20 "Regulator of G-protein-signaling 20" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 47/81 (58%), Positives = 57/81 (70%)

Query:     6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
             K+   +  ++   R     YI+     +VSLDSRVRE++NRNMV PS H FD+AQLQIYT
Sbjct:    33 KKEANKNIIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYT 92

Query:    66 LMHRDSYPRFINSTVYKQLAQ 86
             LMHRDSYPRF+NS VYK L Q
Sbjct:    93 LMHRDSYPRFMNSAVYKDLLQ 113

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|F1NIN7 RGS20 "Regulator of G-protein-signaling 20" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 45/79 (56%), Positives = 57/79 (72%)

Query:     6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
             K+   +  ++   R     YI+     +VSLDSRVRE++NRNM+ PS HTFD+AQLQIYT
Sbjct:   130 KQESNKSVIEEKARLIYEDYISILSPKEVSLDSRVREVINRNMLEPSQHTFDDAQLQIYT 189

Query:    66 LMHRDSYPRFINSTVYKQL 84
             LMHRDSYPRF+NS +YK L
Sbjct:   190 LMHRDSYPRFMNSAIYKDL 208

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

UNIPROTKB|Q9PWA1 RGS20 "Regulator of G-protein signaling 20" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 45/79 (56%), Positives = 57/79 (72%)

Query:     6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
             K+   +  ++   R     YI+     +VSLDSRVRE++NRNM+ PS HTFD+AQLQIYT
Sbjct:   129 KQESNKSVIEEKARLIYEDYISILSPKEVSLDSRVREVINRNMLEPSQHTFDDAQLQIYT 188

Query:    66 LMHRDSYPRFINSTVYKQL 84
             LMHRDSYPRF+NS +YK L
Sbjct:   189 LMHRDSYPRFMNSAIYKDL 207

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0005634 "nucleus" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IBA

UNIPROTKB|O76081 RGS20 "Regulator of G-protein signaling 20" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 47/81 (58%), Positives = 57/81 (70%)

Query:     6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
             K+   +  ++   R     YI+     +VSLDSRVRE++NRNMV PS H FD+AQLQIYT
Sbjct:   299 KKEANKNIIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYT 358

Query:    66 LMHRDSYPRFINSTVYKQLAQ 86
             LMHRDSYPRF+NS VYK L Q
Sbjct:   359 LMHRDSYPRFMNSAVYKDLLQ 379

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0043547 "positive regulation of GTPase activity" evidence=IBA;TAS

UNIPROTKB|E2RH78 RGS20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 46/81 (56%), Positives = 57/81 (70%)

Query:     6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
             K+   +  ++   R     YI+     +VSLDSRVRE++NRNMV PS H FD+AQLQIYT
Sbjct:   292 KKEANKTIIEEKARTIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYT 351

Query:    66 LMHRDSYPRFINSTVYKQLAQ 86
             LMHRDSYPRF+NS +YK L Q
Sbjct:   352 LMHRDSYPRFMNSALYKDLLQ 372

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

ZFIN|ZDB-GENE-040718-128 rgs20 "regulator of G-protein signaling 20" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 43/79 (54%), Positives = 57/79 (72%)

Query:     6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
             ++   +  ++   R     YI+     +VSLDSRVRE++NRNM+ P++HTFD+AQLQIYT
Sbjct:   203 RKEANKSVIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMLEPTSHTFDDAQLQIYT 262

Query:    66 LMHRDSYPRFINSTVYKQL 84
             LM RDSYPRF+NS VYK L
Sbjct:   263 LMQRDSYPRFMNSPVYKNL 281

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005096 "GTPase activator activity" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

UNIPROTKB|F1NJM4 RGS19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 41/53 (77%), Positives = 47/53 (88%)

Query:    34 VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 86
             VSLDSRVRE++NR M  PS+HTFD+AQLQIYTLMHRDSYPRF+NS +YK L Q
Sbjct:   119 VSLDSRVREVINRKMQEPSSHTFDDAQLQIYTLMHRDSYPRFLNSAIYKSLLQ 171

GO:0038032 "termination of G-protein coupled receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9PWA1	RGS20_CHICK	No assigned EC number	0.5696	0.7117	0.3623	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
cd08718	118	cd08718, RGS_RZ-like, Regulator of G protein signa	2e-31
cd08746	167	cd08746, RGS_RGS20, Regulator of G protein signali	4e-28
cd08745	118	cd08745, RGS_RGS19, Regulator of G protein signali	5e-25
cd08744	118	cd08744, RGS_RGS17, Regulator of G protein signali	2e-22
cd08705	121	cd08705, RGS_R7-like, Regulator of G protein signa	1e-16
cd08713	114	cd08713, RGS_RGS3, Regulator of G protein signalin	5e-16
pfam00615	117	pfam00615, RGS, Regulator of G protein signaling d	4e-15
cd08712	114	cd08712, RGS_RGS18, Regulator of G protein signali	1e-13
cd08714	114	cd08714, RGS_RGS4, Regulator of G protein signalin	5e-13
cd08716	114	cd08716, RGS_RGS13, Regulator of G protein signali	7e-13
cd08715	114	cd08715, RGS_RGS1, Regulator of G protein signalin	9e-13
cd08711	125	cd08711, RGS_RGS8, Regulator of G protein signalin	6e-12
smart00315	118	smart00315, RGS, Regulator of G protein signalling	9e-12
cd08706	113	cd08706, RGS_R12-like, Regulator of G protein sign	1e-11
cd08717	114	cd08717, RGS_RGS5, Regulator of G protein signalin	2e-11
cd08723	111	cd08723, RGS_RGS21, Regulator of G protein signali	3e-11
cd07440	113	cd07440, RGS, Regulator of G protein signaling (RG	5e-11
cd08740	126	cd08740, RGS_RGS11, Regulator of G protein signali	1e-10
cd08737	125	cd08737, RGS_RGS6, Regulator of G protein signalin	9e-10
cd08710	114	cd08710, RGS_RGS16, Regulator of G protein signali	2e-09
cd08738	121	cd08738, RGS_RGS7, Regulator of G protein signalin	8e-09
cd08739	121	cd08739, RGS_RGS9, Regulator of G protein signalin	3e-08
cd08709	114	cd08709, RGS_RGS2, Regulator of G protein signalin	2e-07
cd08707	117	cd08707, RGS_Axin, Regulator of G protein signalin	8e-06
cd08742	115	cd08742, RGS_RGS12, Regulator of G protein signali	9e-06
cd08719	135	cd08719, RGS_SNX13, Regulator of G protein signali	3e-05
cd08743	129	cd08743, RGS_RGS14, Regulator of G protein signali	1e-04
cd08741	113	cd08741, RGS_RGS10, Regulator of G protein signali	0.002

>gnl|CDD|188673 cd08718, RGS_RZ-like, Regulator of G protein signaling (RGS) domain found in the RZ protein

 Score =  107 bits (268), Expect = 2e-31
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 82
           YI+     +VSLDSRVRE++NRNM+ PS HTFD+AQLQIYTLMHRDSYPRF+NS +YK
Sbjct: 60  YISILSPKEVSLDSRVREVINRNMLEPSPHTFDDAQLQIYTLMHRDSYPRFLNSAIYK 117

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by RGS domains, which accelerate GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, which results in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins includes RGS17, RGS19 (former GAIP), RGS20, and its splice variant Ret-RGS. Length = 118

>gnl|CDD|188700 cd08746, RGS_RGS20, Regulator of G protein signaling (RGS) domain found in the RGS20 protein

 Score =  100 bits (249), Expect = 4e-28
 Identities = 44/77 (57%), Positives = 56/77 (72%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  ++   R     YI+     +VSLDSRVRE++NRNM+ PS HTFD+AQLQIYT
Sbjct: 90  KKEANKSVIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMLEPSQHTFDDAQLQIYT 149

Query: 66  LMHRDSYPRFINSTVYK 82
           LMHRDSYPRF+NS +YK
Sbjct: 150 LMHRDSYPRFMNSAIYK 166

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS20 protein (also known as RGSZ1), a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by the RGS domain, which accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP resulting in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins include RGS17, RGS19 (former GAIP), and the splice variant of RGS20, Ret-RGS. RGS20 is expressed exclusively in brain, with the highest concentrations in the temporal lobe and the caudate nucleus and may play a role in signaling regulation in these brain regions. RGS20 acts as a GAP of both G-alpha-z and G-alpha-I and controls signaling in the mu opioid receptor pathway. Length = 167

>gnl|CDD|188699 cd08745, RGS_RGS19, Regulator of G protein signaling (RGS) domain found in the RGS19 protein

 Score = 90.9 bits (225), Expect = 5e-25
 Identities = 41/58 (70%), Positives = 48/58 (82%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 82
           YI+     +VSLDSRVRE +NR M  PS+HTFD+AQLQIYTLMHRDSYPRF+NS +YK
Sbjct: 60  YISILSPKEVSLDSRVREGINRKMQEPSSHTFDDAQLQIYTLMHRDSYPRFLNSPIYK 117

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS19 protein (also known as GAIP), a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by RGS domains, which accelerate GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, resulting in a reassociation of the alpha-subunit with the beta-gamma-dimer and an inhibition of downstream activity. As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins includes RGS17, RGS20, and its splice variant Ret-RGS. RGS19 participates in regulation of dopamine receptor D2R and D3R, as well as beta-adrenergic receptors . Length = 118

>gnl|CDD|188698 cd08744, RGS_RGS17, Regulator of G protein signaling (RGS) domain found in the RGS17 protein

 Score = 84.0 bits (207), Expect = 2e-22
 Identities = 38/77 (49%), Positives = 55/77 (71%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  ++   R     YI+     +VSLDSRVRE++NRN++ P+ H +++AQLQIYT
Sbjct: 41  KKEQNKKVIEEKARLIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYT 100

Query: 66  LMHRDSYPRFINSTVYK 82
           LMHRDS+PRF+NS +YK
Sbjct: 101 LMHRDSFPRFLNSQIYK 117

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS17 protein, a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of the G-protein signaling controlled by the RGS domain, which accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, results in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. The RZ subfamily of RGS proteins includes RGS19 (former GAIP), RGS20, and its splice variant Ret-RGS. RGS17 is a relatively non-selective GAP for G-alpha-z and other G-alpha-i/o proteins. RGS17 blocks dopamine receptor-mediated inhibition of cAMP accumulation; it also blocks thyrotropin releasing hormone-stimulated Ca++ mobilization. RGS17, like other members of RZ subfamily, can act either as a GAP or as G-protein effector antogonist. Length = 118

>gnl|CDD|188660 cd08705, RGS_R7-like, Regulator of G protein signaling (RGS) domain found in the R7 subfamily of proteins

 Score = 69.6 bits (171), Expect = 1e-16
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 83
           +++DS+  EI  +N+  P  +TFD AQ  IY LM +DSYPRF+ S +YK+
Sbjct: 72  INIDSKTMEITLKNLKDPHRYTFDAAQEHIYMLMKKDSYPRFLRSDIYKE 121

The RGS (Regulator of G-protein Signaling) domain is an essential part of the R7 (Neuronal RGS) protein subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The R7 subfamily includes RGS6, RGS7, RGS9, and RGS11, all of which, in humans, are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes. In addition, R7 proteins were found to bind many other proteins outside of the G protein signaling pathways including: m-opioid receptor, beta-arrestin, alpha-actinin-2, NMDAR, polycystin, spinophilin, guanylyl cyclase, among others. Length = 121

>gnl|CDD|188668 cd08713, RGS_RGS3, Regulator of G protein signaling (RGS) domain found in the RGS3 protein

 Score = 67.6 bits (165), Expect = 5e-16
 Identities = 27/66 (40%), Positives = 39/66 (59%)

Query: 16  SSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRF 75
           S  ++    YI  +   +V+LDS  RE    N+ +P+   FD AQ +IY LM +DSYPRF
Sbjct: 47  SRAKKIFAEYIAIQSCKEVNLDSYTREHTKENLQNPTRGCFDLAQKRIYGLMEKDSYPRF 106

Query: 76  INSTVY 81
           + S +Y
Sbjct: 107 LRSDLY 112

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS3 protein. RGS3 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. RGS3 induces apoptosis when overexpressed and is involved in cell migration through interaction with the Ephrin receptor. RGS3 exits as several splice isoforms and interacts with neuroligin, estrogen receptor-alpha, and 14-3-3 outside of the GPCR pathways. Length = 114

>gnl|CDD|216023 pfam00615, RGS, Regulator of G protein signaling domain

 Score = 65.3 bits (160), Expect = 4e-15
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMV-SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 83
           ++      +++LDS  RE +  N+   PS   FDEAQ ++Y LM +DSYPRF+ S +Y +
Sbjct: 57  FLAPDSPSEINLDSDTREKIEENLEKQPSPDLFDEAQEEVYDLMEKDSYPRFLKSPLYLR 116

Query: 84  L 84
           L
Sbjct: 117 L 117

RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits. Length = 117

>gnl|CDD|188667 cd08712, RGS_RGS18, Regulator of G protein signaling (RGS) domain found in the RGS18 protein

 Score = 61.5 bits (149), Expect = 1e-13
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 81
           +I T    +V+LD   +E+   ++  P+  +FD AQ ++Y LM +DSYPRF+ S +Y
Sbjct: 56  FIQTDAPKEVNLDFHTKEVTTNSIEQPTLTSFDAAQSRVYQLMEQDSYPRFLKSDIY 112

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS18 protein. RGS18 is a member of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS18 is a member of the R4/RGS subfamily and is expressed predominantly in osteoclasts where it acts as a negative regulator of the acidosis-induced osteoclastogenic OGR1/NFAT signaling pathway. RANKL (receptor activator of nuclear factor B ligand) stimulates osteoclastogenesis by inhibiting expression of RGS18. Length = 114

>gnl|CDD|188669 cd08714, RGS_RGS4, Regulator of G protein signaling (RGS) domain found in the RGS4 protein

 Score = 59.9 bits (145), Expect = 5e-13
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 81
           +I+ + + +V+LDS  RE  +RNM+ P+   FDEAQ +I+TLM +DSY RF+ S  Y
Sbjct: 56  FISVQATKEVNLDSCTREETSRNMLEPTISCFDEAQKKIFTLMEKDSYRRFLKSRFY 112

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS4 protein. RGS4 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. RGS4 is expressed widely in brain including prefrontal cortex, striatum, locus coeruleus (LC), and hippocampus and has been implicated in regulation of opioid, cholinergic, and serotonergic signaling. Dysfunctions in RGS4 proteins are involved in etiology of Parkinson's disease, addiction, and schizophrenia. RGS4 also is up-regulated in the failing human heart. RGS4 interacts with many binding partners outside of GPCR pathways, including calmodulin, COP, Kir3, PIP, calcium/CaM, PA, ErbB3, and 14-3-3. Length = 114

>gnl|CDD|188671 cd08716, RGS_RGS13, Regulator of G protein signaling (RGS) domain found in the RGS13 protein

 Score = 59.6 bits (144), Expect = 7e-13
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K A +R  + S  R+    YI  +   ++++DS  R+ + RN+  P+   FDEAQ  +Y 
Sbjct: 38  KIASQRKRI-SMARKLFASYIQPQAPREINIDSPTRKAIIRNIQEPTQSCFDEAQRIVYM 96

Query: 66  LMHRDSYPRFINSTVYKQ 83
            M RDSYPRF+ S  Y++
Sbjct: 97  HMERDSYPRFLESKFYQK 114

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS13 protein. RGS13 is member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS13 is predominantly expressed in T and B lymphocytes and in mast cells, and plays a role in adaptive immune responses. RGS13 also found in Rgs13, which is also expressed in dendritic cells and in neuroendocrine cells of the thymus, gastrointestinal, and respiratory tracts. Outside of the GPCR pathway, RGS5 interacts with the PIP3 protein. Length = 114

>gnl|CDD|188670 cd08715, RGS_RGS1, Regulator of G protein signaling (RGS) domain found in the RGS1 protein

 Score = 59.2 bits (143), Expect = 9e-13
 Identities = 24/60 (40%), Positives = 38/60 (63%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++ +  + ++++D R RE   + + +P+   FDEAQ  IY LM RDSYPRF+ S +Y  L
Sbjct: 55  FVQSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYILMERDSYPRFLKSDIYLNL 114

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS1 protein. RGS1 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS 1 is expressed predominantly in hematopoietic compartments, including T and B lymphocytes, and may play a major role in chemokine-mediated homing of lymphocytes to secondary lymphoid organs. In addition, RGS1 interacts with calmodulin and 14-3-3 protein outside of the GPCR pathway. Length = 114

>gnl|CDD|188666 cd08711, RGS_RGS8, Regulator of G protein signaling (RGS) domain found in the RGS8 protein

 Score = 57.4 bits (138), Expect = 6e-12
 Identities = 24/76 (31%), Positives = 44/76 (57%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+      + S   R    +++ +   +V++D + RE   +N+  PS   FD+AQ ++++
Sbjct: 48  KKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHS 107

Query: 66  LMHRDSYPRFINSTVY 81
           LM +DSYPRF+ S +Y
Sbjct: 108 LMEKDSYPRFLRSKMY 123

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS8 protein. RGS8 is a member of R4/RGS subfamily of RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS8 is involved in G-protein-gated potassium channels regulation and predominantly expressed in the brain. RGS8 also is selectively expressed in the hematopoietic system (NK cells). Length = 125

>gnl|CDD|214613 smart00315, RGS, Regulator of G protein signalling domain

 Score = 56.9 bits (138), Expect = 9e-12
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNM--VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 82
           +++     +V+LDS +RE +  N+    P    FDEAQ ++Y L+ +DS+PRF+ S  Y 
Sbjct: 57  FLSPNAPKEVNLDSDLREKIEENLESEEPPPDLFDEAQREVYELLEKDSFPRFLESDYYL 116

Query: 83  QL 84
           + 
Sbjct: 117 RF 118

RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits. Length = 118

>gnl|CDD|188661 cd08706, RGS_R12-like, Regulator of G protein signaling (RGS) domain found in the R12 subfamily of proteins

 Score = 56.2 bits (136), Expect = 1e-11
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 83
           ++++K S  V++DS+ + +    +  P    F + QLQI+ LM  DSY RF+ S +Y+Q
Sbjct: 56  FLSSKASSPVNIDSQAQ-LAEEMLEEPHPDMFQKQQLQIFNLMKFDSYSRFLKSPLYQQ 113

The RGS (Regulator of G-protein Signaling) domain is an essential part of the R12 (Neuronal RGS) protein subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play a critical regulatory role as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling, controlled by RGS domain, accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP that results in reassociation of the alpha-subunit with the beta-gamma-dimer and thereby inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The R12 RGS subfamily includes RGS10, RGS12 and RGS14 all of which are highly selective for G-alpha-i1 over G-alpha-q. Length = 113

>gnl|CDD|188672 cd08717, RGS_RGS5, Regulator of G protein signaling (RGS) domain found in the RGS5 protein

 Score = 56.2 bits (135), Expect = 2e-11
 Identities = 23/78 (29%), Positives = 46/78 (58%)

Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+      + +  ++    +I T+   +V++D   +++  +N+V PS+ +FD AQ +I+ 
Sbjct: 37  KKTKSPLKMATKAKKIYEEFIQTEAPKEVNIDHFTKDVTMKNLVEPSSSSFDLAQKRIFA 96

Query: 66  LMHRDSYPRFINSTVYKQ 83
           LM +DS PRF+ S  Y++
Sbjct: 97  LMEKDSLPRFVRSEFYQE 114

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS5 protein. RGS5 is member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Two splice isoforms of RGS5 has been found: RGS5L (long) which is expressed in smooth muscle cells (pericytes) and heart and RGS5S (short) which is highly expressed in the ciliary body of the eye, kidney, brain, spleen, skeletal muscle, and small intestine. Outside of the GPCR pathway, RGS5 interacts with the 14-3-3 protein. Length = 114

>gnl|CDD|188678 cd08723, RGS_RGS21, Regulator of G protein signaling (RGS) domain found in the RGS21 protein

 Score = 55.4 bits (133), Expect = 3e-11
 Identities = 23/59 (38%), Positives = 39/59 (66%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 83
           +I      ++++D   R+++++N+  P+   FDEAQ  IY LM +DS+PRF+ S VYK+
Sbjct: 53  FIQADAPKEINIDFHTRDLISQNISEPTLKCFDEAQSLIYCLMAKDSFPRFLKSEVYKK 111

The RGS (Regulator of G-protein Signaling) domain is an essential part RGS21 protein, a member of RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, apoptosis, and cell proliferation, as well as modulation of cardiac development. RGS21 is a member of the R4/RGS subfamily and its mRNA was detected only in sensory taste cells that express sweet taste receptors and the taste G-alpha subunit, gustducin, suggesting a potential role in regulating taste transduction. Length = 111

>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain superfamily

 Score = 54.7 bits (132), Expect = 5e-11
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNH--TFDEAQLQIYTLMHRDSYPRFINSTVYK 82
           YI+     ++++   +RE +  N+  P      FDEAQ  I  L+ +DSYPRF+ S +Y 
Sbjct: 53  YISKDAPKEINIPESIREEIEENLEEPYPDPDCFDEAQEHILNLLEKDSYPRFLKSDLYL 112

Query: 83  Q 83
           +
Sbjct: 113 K 113

The RGS domain is an essential part of the Regulator of G-protein Signaling (RGS) protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. While inactive, G-alpha-subunits bind GDP, which is released and replaced by GTP upon agonist activation. GTP binding leads to dissociation of the alpha-subunit and the beta-gamma-dimer, allowing them to interact with effectors molecules and propagate signaling cascades associated with cellular growth, survival, migration, and invasion. Deactivation of the G-protein signaling controlled by the RGS domain accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, which results in the reassociation of the alpha-subunit with the beta-gamma-dimer and thereby inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins are also involved in apoptosis and cell proliferation, as well as modulation of cardiac development. Several RGS proteins can fine-tune immune responses, while others play important roles in neuronal signals modulation. Some RGS proteins are principal elements needed for proper vision. Length = 113

>gnl|CDD|188694 cd08740, RGS_RGS11, Regulator of G protein signaling (RGS) domain found in the RGS11 protein

 Score = 54.1 bits (130), Expect = 1e-10
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           V++DS+  E     +  P  +  D+AQ+ IY LM +DSYPRF+ S +YK L
Sbjct: 73  VNIDSKTMERTLEGLKQPHRYVLDDAQMHIYMLMKKDSYPRFLKSDLYKNL 123

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS11 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and RGS9, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS11 is expressed exclusively in retinal ON-bipolar neurons in which it forms complexes with G-beta-5 and R7AP (RGS7 anchor protein ) and plays crucial roles in processing the light responses of retinal neurons. Length = 126

>gnl|CDD|188691 cd08737, RGS_RGS6, Regulator of G protein signaling (RGS) domain found in the RGS6 protein

 Score = 51.9 bits (124), Expect = 9e-10
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++LDS   E  ++N+  P  +TF++AQ  IY LM  DSY RF+ S  Y+ L
Sbjct: 73  INLDSHSYEKTSQNVKDPGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDL 123

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS6 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). Other members of the R7 subfamily (Neuronal RGS) include: RGS7, RGS9, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS6 exists in multiple splice isoforms with identical RGS domains, but possess complete or incomplete GGL domains and distinct N- and C-terminal domains. RGS6 interacts with SCG10, a neuronal growth-associated protein and therefore regulates neuronal differentiation. Another RGS6-binding protein is DMAP1, a component of the Dnmt1 complex involved in repression of newly replicated genes. Mutations of a critical residue required for interaction of RGS6 protein with G proteins did not affect the ability of RGS6 to interact with both SCG10 and DMAP1. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Length = 125

>gnl|CDD|188665 cd08710, RGS_RGS16, Regulator of G protein signaling (RGS) domain found in the RGS16 protein

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 82
           +I ++   +V++D   RE+   N+ + +   FD AQ +  TLM +DSYPRF+ S  Y+
Sbjct: 56  FIRSEAPKEVNIDHETRELTRTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYR 113

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS16 protein. RGS16 is a member of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS16 is a member of the R4/RGS subfamily and interacts with neuronal G-alpha0. RGS16 expression is upregulated by IL-17 of the NF-kappaB signaling pathway in autoimmune B cells. Length = 114

>gnl|CDD|188692 cd08738, RGS_RGS7, Regulator of G protein signaling (RGS) domain found in the RGS7 protein

 Score = 49.3 bits (117), Expect = 8e-09
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 83
           ++LDS+  +   +N+  P  +TF++AQ  IY LM  DSYPRFI S+ Y++
Sbjct: 72  INLDSKSYDKTTQNVKDPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQE 121

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS7 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS9, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. R7 RGS proteins are key modulators of the pharmacological effects of drugs involved in the development of tolerance and addiction. In addition, RGS7 was found to bind a component of the synaptic fusion complex, snapin, and some other proteins outside of G protein signaling pathways. Length = 121

>gnl|CDD|188693 cd08739, RGS_RGS9, Regulator of G protein signaling (RGS) domain found in the RGS9 protein

 Score = 47.7 bits (113), Expect = 3e-08
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 20  RAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINST 79
             AR +IN        +D +  +I  + +  P  +  D AQ  IY LM +DSY R++ S 
Sbjct: 66  PGARRWIN--------IDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSP 117

Query: 80  VYKQ 83
           +YK+
Sbjct: 118 IYKE 121

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS9 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS9 forms constitutive complexes with G-beta-5 subunit and controls such fundamental functions as vision and behavior. RGS9 exists in two splice isoforms: RGS9-1 which regulates phototransduction in rods and cones and RGS9-2 which regulates dopamine and opioid signaling in the basal ganglia. In addition, RGS9 was found to bind many other proteins outside of G protein signaling pathways including: mu-opioid receptor, beta-arrestin, alpha-actinin-2, NMDAR, polycystin, spinophilin, and guanylyl cyclase, among others. Length = 121

>gnl|CDD|188664 cd08709, RGS_RGS2, Regulator of G protein signaling (RGS) domain found in the RGS2 protein

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 17/68 (25%), Positives = 40/68 (58%)

Query: 16  SSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRF 75
           S  ++    +I  +   ++++D + + ++ +N+   ++  F  AQ ++Y+LM  +SYPRF
Sbjct: 47  SKAKKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTAAQKRVYSLMENNSYPRF 106

Query: 76  INSTVYKQ 83
           + S  Y++
Sbjct: 107 LESEFYQE 114

The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS2 protein. RGS2 is a member of R4/RGS subfamily of RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G- alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS2 plays important roles in the regulation of blood pressure and the pathogenesis of human hypertension, as well as in bone formation in osteoblasts. Outside of the GPCR pathway RGS2 interacts with calmodulin, beta- COP, tubulin, PKG1-alpha, and TRPV6. Length = 114

>gnl|CDD|188662 cd08707, RGS_Axin, Regulator of G protein signaling (RGS) domain found in the Axin protein

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 33  KVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 83
           K +  S ++E + +  + P    FD+AQ +I T M  ++YP F+ S +Y +
Sbjct: 69  KPATKSFIKECIKKQQLDP--AMFDQAQTEIQTTMEENTYPSFLKSDIYLE 117

The RGS (Regulator of G-protein Signaling) domain is an essential part of the Axin protein. Axin is a member of the RA/RGS subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, and skeletal and muscle development. The RGS domain of Axin is specifically interacts with the heterotrimeric G-alpha12 protein, but not with closely related G-alpha13, and provides a unique tool to regulate G-alpha12-mediated signaling processes. The RGS domain of Axin also interacts with the tumor suppressor protein APC (Adenomatous Polyposis Coli) in order to control the cytoplasmic level of the proto-oncogene, beta-catenin. Length = 117

>gnl|CDD|188696 cd08742, RGS_RGS12, Regulator of G protein signaling (RGS) domain found in the RGS12 protein

 Score = 41.2 bits (96), Expect = 9e-06
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 19  RRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINS 78
           R     ++ +K +  V++DS+  ++ +  + +P    F E QLQI+ LM  DSY RF+ S
Sbjct: 52  REIFSKFLCSKATTPVNIDSQA-QLADDILNAPHPDMFKEQQLQIFNLMKFDSYTRFLKS 110

Query: 79  TVYKQ 83
            +Y++
Sbjct: 111 PLYQE 115

RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS12 protein. RGS12 is a member of the RA/RGS subfamily of RGS proteins family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS12 belong to the R12 RGS subfamily, which includes RGS10 and RGS14, all of which are highly selective for G-alpha-i1 over G-alpha-q. RGS12 exist in multiple splice variants: RGS12s (short) contains the core RGS/RBD/GoLoco domains, while RGS12L (long) has additional N-terminal PDZ and PTB domains. RGS12 splice variants show distinct expression patterns, suggesting that they have discrete functions during mouse embryogenesis. RGS12 also may play a critical role in coordinating Ras-dependent signals that are required for promoting and maintaining neuronal differentiation. Length = 115

>gnl|CDD|188674 cd08719, RGS_SNX13, Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 25  YINTKQSFKVSLD-SRVREIVNRNMV-SPSNHTFDEAQLQIYTLMHRDS--YPRFINSTV 80
           Y++ K S +V LD S V++++NR    +PS+  FD+ Q +++ +M  D   YP F  S  
Sbjct: 73  YLSEKASPRVPLDDSLVKKLLNRLRNDTPSDLWFDDIQQKVFDIMQEDERFYPAFKKSPA 132

Query: 81  Y 81
           Y
Sbjct: 133 Y 133

The RGS (Regulator of G-protein Signaling) domain is an essential part of the SNX13 (Sorting Nexin 13) protein, a member of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, as well as apoptosis, cell proliferation, and modulation of cardiac development. The RGS-domain of SNX13 plays a major role through attenuation of Galphas-mediated signaling and regulates endocytic trafficking and degradation of the epidermal growth factor receptor. Snx13-null mice were embryonic lethal around midgestation which supports an essential role for SNX13 in mouse development and regulation of endocytosis dynamics. Length = 135

>gnl|CDD|188697 cd08743, RGS_RGS14, Regulator of G protein signaling (RGS) domain found in the RGS14 protein

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 19  RRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINS 78
           R+    ++++     V++D +   I    + +PS   F   QLQI+ LM  DSY RF+ S
Sbjct: 62  RKIYNEFLSSSSQSPVNIDQQAW-IGEDMLATPSPDMFRAQQLQIFNLMKFDSYARFVKS 120

Query: 79  TVYKQ 83
            +Y+ 
Sbjct: 121 PLYQD 125

RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS14 protein. RGS14 is a member of the RA/RGS subfamily of RGS proteins family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS14 belong to the R12 RGS subfamily, which includes RGS10 and RGS12, all of which are highly selective for G-alpha-i1 over G-alpha-q. RGS14 binds and regulates the subcellular localization and activities of H-Ras and Raf kinases in cells and thereby integrates G protein and Ras/Raf signaling pathways. Length = 129

>gnl|CDD|188695 cd08741, RGS_RGS10, Regulator of G protein signaling (RGS) domain found in the RGS10 protein

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 4   CTKRAGRRGNVQSSKRRAA--RPYINTKQSFKVSLDSRVREIVNRNMV-SPSNHTFDEAQ 60
           C      +   Q  ++       ++++K S +V+++ + R  +N  ++  P    F + Q
Sbjct: 33  CEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSR--LNEKILEEPHPLMFQKLQ 90

Query: 61  LQIYTLMHRDSYPRFINSTVY 81
            QI+ LM  DSY RF+ S ++
Sbjct: 91  DQIFNLMKYDSYSRFLKSDLF 111

RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS10 protein. RGS10 is a member of the RA/RGS subfamily of RGS proteins family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS10 belong to the R12 RGS subfamily, which includes RGS12 and RGS14, all of which are highly selective for G-alpha-i1 over G-alpha-q. RGS10 exists in 2 splice isoforms. RGS10A is specifically expressed in osteoclasts and is a key component in the RANKL signaling mechanism for osteoclast differentiation, whereas RGS10B expressed in brain and in immune tissues and has been implicated in diverse processes including: promoting of dopaminergic neuron survival via regulation of the microglial inflammatory response, modulation of presynaptic and postsynaptic G-protein signalling, as well as a possible role in regulation of gene expression. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG3589|consensus	221		99.82
smart00315	118	RGS Regulator of G protein signalling domain. RGS	99.76
PF00615	118	RGS: Regulator of G protein signaling domain; Inte	99.69
KOG3590|consensus	602		98.96
KOG3590|consensus	602		98.89
PF09128	188	RGS-like: Regulator of G protein signalling-like d	97.2
KOG0986|consensus	591		93.77

>KOG3589|consensus

Probab=99.82  E-value=3.9e-20  Score=138.48  Aligned_cols=85  Identities=35%  Similarity=0.603  Sum_probs=79.4

Q ss_pred             ccCCCh--hhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHhhCccccccccHHH
Q psy1250           6 KRAGRR--GNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPS--NHTFDEAQLQIYTLMHRDSYPRFINSTVY   81 (111)
Q Consensus         6 kk~~~~--~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~--~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y   81 (111)
                      |+...+  ..+...|+.||++||.++||.+||||..+|..+.++|..|+  +++||.||.+||.||+.|+|||||+|+.|
T Consensus       117 k~~~~~~~~~~~~~a~~i~~~f~~~~ap~~vn~d~~tre~~~~~l~~p~~~~~~f~~Aq~~i~~lm~~dsy~RFl~s~~y  196 (221)
T KOG3589|consen  117 KKRRSEKSTKMSEKAKEIYEEFSAPAAPKEVNLDSKTRELTNRNLSEPSGQRTCFDEAQKHVYTLMEKDSYPRFLRSPLY  196 (221)
T ss_pred             HhCcCchhhhhhHHHHHHHHHHhccCCCCCCCCchHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhcccCCCccccCCHHH
Confidence            555555  77999999999999999999999999999999999999998  99999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q psy1250          82 KQLAQLDSS   90 (111)
Q Consensus        82 ~~~l~~~~~   90 (111)
                      ++++...+.
T Consensus       197 ~~l~~~~~~  205 (221)
T KOG3589|consen  197 LDLLKQPKK  205 (221)
T ss_pred             HHHHHHhhc
Confidence            999997765

>smart00315 RGS Regulator of G protein signalling domain

Probab=99.76  E-value=2.4e-18  Score=114.38  Aligned_cols=79  Identities=33%  Similarity=0.585  Sum_probs=73.0

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhCccccccccHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVS--PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ   83 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~--p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~   83 (111)
                      |+.....++...|+.||++||.++|+.+|||+..+|+.|...+..  +++++|+.||.+|+.+|+.|.||+|++|+.|.+
T Consensus        38 ~~~~~~~~~~~~a~~I~~~yi~~~s~~~~ni~~~~~~~i~~~~~~~~~~~~~F~~~~~~v~~~l~~~~~~~F~~S~~y~~  117 (118)
T smart00315       38 KKAEDDEERIAKAREIYDKFLSPNAPKEVNLDSDLREKIEENLESEEPPPDLFDEAQEEVYELLEKDSFPRFLESDYYLR  117 (118)
T ss_pred             HhcCCHHHHHHHHHHHHHHHhCCCCCCceeCCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCchHHHhCCHhhcc
Confidence            555566789999999999999999999999999999999999975  899999999999999999999999999999976


Q ss_pred             H
Q psy1250          84 L   84 (111)
Q Consensus        84 ~   84 (111)
                      +
T Consensus       118 ~  118 (118)
T smart00315      118 F  118 (118)
T ss_pred             C
Confidence            3

RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.

>PF00615 RGS: Regulator of G protein signaling domain; InterPro: IPR000342 RGS (Regulator of G Protein Signalling) proteins are multi-functional, GTPase-accelerating proteins that promote GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []

Probab=99.69  E-value=1e-16  Score=105.50  Aligned_cols=79  Identities=25%  Similarity=0.494  Sum_probs=73.8

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHhhCccccccccHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVS--PSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ   83 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~--p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~   83 (111)
                      ++..+...+...|..||++||.++|+.+|||+..+++.+...+..  +.+++|+.||.+|+..|+.+.||+|++|+.|.+
T Consensus        38 ~~~~~~~~~~~~a~~I~~~fi~~~s~~~l~i~~~~~~~~~~~~~~~~~~~~~f~~a~~~v~~~L~~~~~~~F~~S~~y~~  117 (118)
T PF00615_consen   38 KSSESEEQRKKLAQQIYNKFISPGSPNELNIPSKIRKEVQDALENAPPSPDLFDEAQEEVYEMLEEDWFPKFLKSEEYKQ  117 (118)
T ss_dssp             HTSCSHHHHHHHHHHHHHHHTSTTSTTCCSSTHHHHHHHHHHHTSTSTTTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHH
T ss_pred             HhhcchhhHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhchHHhHccCHhhhc
Confidence            445567788899999999999999999999999999999999986  899999999999999999999999999999997


Q ss_pred             H
Q psy1250          84 L   84 (111)
Q Consensus        84 ~   84 (111)
                      +
T Consensus       118 ~  118 (118)
T PF00615_consen  118 F  118 (118)
T ss_dssp             H
T ss_pred             C
Confidence            5

Upon activation by GPCRs, heterotrimeric G proteins exchange GDP for GTP, are released from the receptor, and dissociate into free, active GTP-bound alpha subunit and beta-gamma dimer, both of which activate downstream effectors. The response is terminated upon GTP hydrolysis by the alpha subunit (IPR001019 from INTERPRO), which can then bind the beta-gamma dimer (IPR001632 from INTERPRO, IPR001770 from INTERPRO) and the receptor. RGS proteins markedly reduce the lifespan of GTP-bound alpha subunits by stabilising the G protein transition state. All RGS proteins contain an 'RGS-box' (or RGS domain), which is required for activity. Some small RGS proteins such as RGS1 and RGS4 are comprised of little more than an RGS domain, while others also contain additional domains that confer further functionality []. RGS domains can be found in conjunction with a variety of domains, including: DEP for membrane targeting (IPR000591 from INTERPRO), PDZ for binding to GPCRs (IPR001478 from INTERPRO), PTB for phosphotyrosine-binding (IPR006020 from INTERPRO), RBD for Ras-binding (IPR003116 from INTERPRO), GoLoco for guanine nucleotide inhibitor activity (IPR003109 from INTERPRO), PX for phosphatidylinositol-binding (IPR001683 from INTERPRO), PXA that is associated with PX (IPR003114 from INTERPRO), PH for stimulating guanine nucleotide exchange (IPR001849 from INTERPRO), and GGL (G protein gamma subunit-like) for binding G protein beta subunits (IPR001770 from INTERPRO) []. Those RGS proteins that contain GGL domains can interact with G protein beta subunits to form novel dimers that prevent G protein gamma subunit binding and G protein alpha subunit association, thereby preventing heterotrimer formation.; GO: 0004871 signal transducer activity; PDB: 2BCJ_A 3PSC_A 3PVU_A 1YM7_B 3PVW_A 1OMW_A 2EBZ_A 2BV1_B 2GTP_D 1CMZ_A ....

>KOG3590|consensus

Probab=98.96  E-value=3.6e-10  Score=92.20  Aligned_cols=70  Identities=17%  Similarity=0.336  Sum_probs=64.9

Q ss_pred             HHHHhHHHHhCCCCCccccCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHH
Q psy1250          17 SKRRAARPYINTKQSFKVSLDSRVREIVNRNMV----SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ   86 (111)
Q Consensus        17 ~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~----~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~   86 (111)
                      .|..||.+||.++|..+|-|+..+|..|...|+    ..++.|||+||..|+..||.|+|..||+|..|-.|.-
T Consensus       235 dai~~~~ky~~~~a~~~i~~~~~~~~~i~~~~cg~d~~i~~~CFDEAq~~v~~~~e~Dhf~~fl~s~h~~~y~L  308 (602)
T KOG3590|consen  235 DAVNTFTKYISPDAAKPIPITEAMRNDIIARICGEDGQVDPNCFDEAQSIVFSAMEQDHFSEFLRSHHFCKYQL  308 (602)
T ss_pred             hhhhhhhhhcccccccCccchHHHHhhHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhccccceee
Confidence            599999999999999999999999999999997    3589999999999999999999999999999876543

>KOG3590|consensus

Probab=98.89  E-value=3.7e-09  Score=86.38  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=82.5

Q ss_pred             ccccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHhhCccccccccHH
Q psy1250           4 CTKRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMV---SPSNHTFDEAQLQIYTLMHRDSYPRFINSTV   80 (111)
Q Consensus         4 ~~kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~---~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~   80 (111)
                      |.-..-++++-+..|..||++|++-.|.+.+.++..+|-+|+.+|+   .|.+..|+.|...-+..|+..+++.||+|.+
T Consensus       359 ~~E~~~d~~eAq~DAMilYdKYFSlQat~~l~~~~~~RlevEs~IC~e~gp~~~AF~tAl~~~~~~Le~KYl~DFLKs~~  438 (602)
T KOG3590|consen  359 AKEGQYDGQEAQNDAMILYDKYFSLQATHPLGFDDVVRLEIESNICREGGPLPNAFTTALRQAWTTLEKKYLPDFLKSNL  438 (602)
T ss_pred             hcccccchhhhhcchhHHHHHHhhhhccCccchhHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433456778888999999999999999999999999999999998   4678999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCC
Q psy1250          81 YKQLAQLDSSPGDTGGN   97 (111)
Q Consensus        81 Y~~~l~~~~~~~~~~~~   97 (111)
                      |.+|+...+...++.++
T Consensus       439 y~NYlnEL~~~~~~~~f  455 (602)
T KOG3590|consen  439 YYNYLNELIHSVRGDEF  455 (602)
T ss_pred             HHHHHHHHHhhccCCcc
Confidence            99999977665555444

>PF09128 RGS-like: Regulator of G protein signalling-like domain; InterPro: IPR015212 This entry represents a domain consisting of twelve helices that fold into a compact structure that contains the overall structural scaffold observed in other regulator of G protein signalling (RGS) proteins and three additional helical elements that pack closely to it

Probab=97.20  E-value=0.001  Score=49.39  Aligned_cols=62  Identities=13%  Similarity=0.266  Sum_probs=43.1

Q ss_pred             cCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHH----hc-CCChHHHHHHHHHHHHHHh
Q psy1250           7 RAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRN----MV-SPSNHTFDEAQLQIYTLMH   68 (111)
Q Consensus         7 k~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~----l~-~p~~~~Fd~AQ~~I~~lMe   68 (111)
                      +..+.++++..|.+||.+||.++||..|++|..+...|...    +. ..-..+|..||+.+..-+.
T Consensus        44 k~~~~Ke~rk~~~ei~stFL~~~ApL~v~v~~~v~~ei~~~~~~~~~~e~~r~~f~~~~~~a~~eI~  110 (188)
T PF09128_consen   44 KQGNAKEMRKWAYEIHSTFLDPGAPLRVNVPESVASEIDRTRPELIKEEILRQIFQEAQQRALPEIQ  110 (188)
T ss_dssp             TTS-TTCHHHHHHHHHHHHTSTT-TT-----HHHHHHHTT-HHHHCTTHCHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHcCCCCCceecCCHHHHHhHHhhccccCcHHHHHHHHHHHHHHHHHHHH
Confidence            34777889999999999999999999999999999999422    11 2456889988888776664

Helices 1-9 comprise the RGS fold, in which helices 4-7 form a classic antiparallel bundle adjacent to the other helices. Like other RGS structures, helices 7 and 8 span the length of the folded domain and form essentially one continuous helix with a kink in the middle. Helices 10-12 form an apparently stable C-terminal extension of the structural domain, and although other RGS proteins lack this structure, these elements are intimately associated with the rest of the structural framework by hydrophobic interactions. This domain binds to active G-alpha proteins, promoting GTP hydrolysis by the alpha subunit of heterotrimeric G proteins, thereby inactivating the G protein and rapidly switching off G protein-coupled receptor signalling pathways []. ; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0005737 cytoplasm; PDB: 3CX6_B 3CX8_B 3CX7_B 1HTJ_F 1SHZ_C 3AB3_D 1IAP_A.

>KOG0986|consensus

Probab=93.77  E-value=0.21  Score=42.26  Aligned_cols=80  Identities=13%  Similarity=0.270  Sum_probs=61.9

Q ss_pred             CChhhHHHHHHHhHHHHhCCCCCcc-ccCC-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           9 GRRGNVQSSKRRAARPYINTKQSFK-VSLD-SRVREIVNRNMV-SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         9 ~~~~~l~~~A~~Iy~~yi~~~a~~e-VNI~-~~~r~~i~~~l~-~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      .+.++....++.|++.||....+-. -+.+ ..+...+...+. .|.+++|..--+.+-..|..+.|..|+.|..|..++
T Consensus        93 ~~~~~r~~~~~~i~~~~l~~~~~~~~~~~s~~~~v~~~~~~l~~~~~~~lf~~~~~~~~~~L~~~pF~~f~~S~yf~rFl  172 (591)
T KOG0986|consen   93 ADDDERKDKARQILDAYLMKELLACLPQFSSKDLVTHVQEHLLEKPPKDLFQPLARAICAYLRGDPFQEFLESDYFTRFL  172 (591)
T ss_pred             CCcccchhhHHHHHHHHhhccccccCCCcchhhhhHHHhhhccccCchhhhHHHHHHHHHHhccchHhHhHHHHHHHHHH
Confidence            3455677899999999998665322 2233 455556666664 579999999999999999999999999999999998


Q ss_pred             Hhc
Q psy1250          86 QLD   88 (111)
Q Consensus        86 ~~~   88 (111)
                      ++.
T Consensus       173 QWK  175 (591)
T KOG0986|consen  173 QWK  175 (591)
T ss_pred             HHH
Confidence            854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
1zv4_X	158	Structure Of The Regulator Of G-Protein Signaling 1		3e-19
1cmz_A	152	Solution Structure Of Gaip (Galpha Interacting Prot		1e-17
1agr_E	205	Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4 Leng		4e-10
1ezt_A	166	High-Resolution Solution Structure Of Free Rgs4 By		6e-10
2bv1_A	145	Regulator Of G-Protein Signalling 1 (Human) Length		2e-09
2a72_A	146	Structure Of The Regulator Of G-Protein Signaling D		4e-09
2crp_A	150	Solution Structure Of The Rgs Domain Of Regulator O		5e-09
2jm5_A	151	Solution Structure Of The Rgs Domain From Human Rgs		1e-08
2dlv_A	140	Solution Structure Of The Rgs Domain Of Human Regul		1e-08
2ihd_A	155	Crystal Structure Of Human Regulator Of G-Protein S		2e-08
2ode_B	141	Crystal Structure Of The Heterodimeric Complex Of H		2e-08
2d9j_A	139	Solution Structure Of The Rgs Domain Of Regulator O		3e-08
2oj4_A	127	Crystal Structure Of Rgs3 Rgs Domain Length = 127		4e-08
3c7l_A	137	Molecular Architecture Of Galphao And The Structura		9e-08
3c7k_B	129	Molecular Architecture Of Galphao And The Structura		1e-07
2ik8_B	140	Crystal Structure Of The Heterodimeric Complex Of H		1e-06
2bt2_A	161	Structure Of The Regulator Of G-Protein Signaling 1		1e-06
2es0_A	148	Structure Of The Regulator Of G-Protein Signaling D		1e-06
2v4z_B	142	The Crystal Structure Of The Human G-Protein Subuni		3e-06
1fqj_B	147	Crystal Structure Of The Heterotrimeric Complex Of		3e-06
4ekc_B	137	Structure Of Human Regulator Of G Protein Signaling		8e-06
2pbi_A	424	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		8e-06
2af0_A	146	Structure Of The Regulator Of G-Protein Signaling D		1e-05
1fqi_A	147	Rgs9 Rgs Domain Length = 147		3e-05
2ebz_A	155	Solution Structure Of The Rgs Domain From Human Reg		7e-05
2jnu_A	154	Solution Structure Of The Rgs Domain Of Human Rgs14		2e-04

>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17 (Rgsz2) Length = 158

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  ++   R     YI+     +VSLDSRVRE++NRN++ P+ H +++AQLQIYT
Sbjct: 73  KKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYT 132
Query: 66  LMHRDSYPRFINSTVYKQLAQ 86
           LMHRDS+PRF+NS +YK   +
Sbjct: 133 LMHRDSFPRFLNSQIYKSFVE 153

>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein): A Regulator Of G Protein Signaling Length = 152

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           V    R     Y++     +VSLDSRVRE +N+ M  PS HTFD+AQLQIYTLMHRDSYP
Sbjct: 68  VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYP 127
Query: 74  RFINSTVYKQLA-QLDSS 90
           RF++S  Y+ L   +DSS
Sbjct: 128 RFLSSPTYRALLPWVDSS 145

>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4 Length = 205

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I+ + + +V+LDS  RE  +RNM+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L
Sbjct: 118 FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 177
Query: 85  AQLDSSPGDTGGNSDSSTPARKSSNAT 111
               ++P   G   +    A+ S++ T
Sbjct: 178 ----TNPSSCGA--EKQKGAKSSADCT 198

>pdb|1EZT|A Chain A, High-Resolution Solution Structure Of Free Rgs4 By Nmr Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I+ + + +V+LDS  RE  +RNM+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L
Sbjct: 72  FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 131
Query: 85  AQLDSSPGDTGGNSDSSTPARKSSNAT 111
               ++P   G        A+ S++ T
Sbjct: 132 ----TNPSSCGAEKQKG--AKSSADCT 152

>pdb|2BV1|A Chain A, Regulator Of G-Protein Signalling 1 (Human) Length = 145

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 23  RPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK 82
           + ++++  + ++++D R RE   + + +P+   FDEAQ  IYTLM +DSYPRF+ S +Y 
Sbjct: 78  KAFVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYL 137
Query: 83  QL 84
            L
Sbjct: 138 NL 139

>pdb|2A72|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain Of Rgs7 Length = 146

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDSSPGD 93
           ++LDS+  +    N+  P  +TF++AQ  IY LM  DSYPRFI S+ Y++L Q     G+
Sbjct: 80  INLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKSGN 139
Query: 94  T 94
           +
Sbjct: 140 S 140

>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G- Protein Signalling 5 (Rgs 5) Length = 150

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I T+   +V++D   ++I  +N+V PS  +FD AQ +I+ LM +DS PRF+ S  Y++L
Sbjct: 84  FIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQEL 143

>pdb|2JM5|A Chain A, Solution Structure Of The Rgs Domain From Human Rgs18 Length = 151

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I T    +V+LD   +E++  ++  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L
Sbjct: 70  FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 129
Query: 85  AQ 86
            +
Sbjct: 130 ME 131

>pdb|2DLV|A Chain A, Solution Structure Of The Rgs Domain Of Human Regulator Of G-Protein Signaling 18 Length = 140

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I T    +V+LD   +E++  ++  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L
Sbjct: 74  FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 133

>pdb|2IHD|A Chain A, Crystal Structure Of Human Regulator Of G-Protein Signaling 8, Rgs8 Length = 155

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 12  GNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDS 71
             + S   R    +++ +   +V++D + RE   +N+  PS   FD+AQ ++++LM +DS
Sbjct: 81  AKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDS 140
Query: 72  YPRFINSTVYKQL 84
           YPRF+ S +Y  L
Sbjct: 141 YPRFLRSKMYLDL 153

>pdb|2ODE|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 141

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 12  GNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDS 71
             + S   R    +++ +   +V++D + RE   +N+  PS   FD+AQ ++++LM +DS
Sbjct: 60  AKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDS 119
Query: 72  YPRFINSTVYKQL 84
           YPRF+ S +Y  L
Sbjct: 120 YPRFLRSKMYLDL 132

>pdb|2D9J|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G- Protein Signaling 7 Length = 139

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++LDS+  +    N+  P  +TF++AQ  IY LM  DSYPRFI S+ Y++L
Sbjct: 82  INLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQEL 132

>pdb|2OJ4|A Chain A, Crystal Structure Of Rgs3 Rgs Domain Length = 127

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+   +  + S  ++    YI  +   +V+LDS  RE    N+ S +   FD AQ +I+ 
Sbjct: 47  KKVKSQSKMASKAKKIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFG 106
Query: 66  LMHRDSYPRFINSTVYKQL 84
           LM +DSYPRF+ S +Y  L
Sbjct: 107 LMEKDSYPRFLRSDLYLDL 125

>pdb|3C7L|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 137

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           YI ++   +V++D   RE+   N+ + +   FD AQ +  TLM +DSYPRF+ S  Y+ L
Sbjct: 77  YIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDL 136
Query: 85  A 85
           A
Sbjct: 137 A 137

>pdb|3C7K|B Chain B, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 129

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           YI ++   +V++D   RE+   N+ + +   FD AQ +  TLM +DSYPRF+ S  Y+ L
Sbjct: 69  YIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDL 128
Query: 85  A 85
           A
Sbjct: 129 A 129

>pdb|2IK8|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 140

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I ++   +V++D   RE+   N+ + +   FD AQ +  TLM +DSYPRF+ S  Y+ L
Sbjct: 71  FICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDL 130

>pdb|2BT2|A Chain A, Structure Of The Regulator Of G-Protein Signaling 16 Length = 161

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 14  VQSSKRRAARP------YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLM 67
           ++S+ + A+R       +I ++   +V++D   RE+   N+ + +   FD AQ +  TLM
Sbjct: 75  IRSATKLASRAHQIFEEFICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLM 134
Query: 68  HRDSYPRFINSTVYKQL 84
            +DSYPRF+ S  Y+ L
Sbjct: 135 EKDSYPRFLKSPAYRDL 151

>pdb|2ES0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain Of Rgs6 Length = 148

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++LDS   EI ++N+     +TF++AQ  IY LM  DSY RF+ S  Y+ L
Sbjct: 78  INLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDL 128

>pdb|2V4Z|B Chain B, The Crystal Structure Of The Human G-Protein Subunit Alpha ( Gnai3) In Complex With An Engineered Regulator Of G- Protein Signaling Type 2 Domain (Rgs2) Length = 142

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 6   KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYT 65
           K+      + S  R+    +I  +   ++++D + + ++ +N+   ++  F  AQ ++Y+
Sbjct: 53  KKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYS 112
Query: 66  LMHRDSYPRFINSTVYKQLAQ 86
           LM  DSYPRF+ S  Y+ L +
Sbjct: 113 LMENDSYPRFLKSEFYQDLCK 133

>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 147

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +++D +  +I  + +  P  +  D AQ  IY LM +DSY R++ S +YK++
Sbjct: 88  INIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 138

>pdb|4EKC|B Chain B, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 137

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 42/73 (57%)
Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           + S  R+    +I  +   ++++D + + ++ +N+   ++  F  AQ ++Y+LM  +SYP
Sbjct: 62  LSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYP 121
Query: 74  RFINSTVYKQLAQ 86
           RF+ S  Y+ L +
Sbjct: 122 RFLESEFYQDLCK 134

>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 424

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +++D +  +I  + +  P  +  D AQ  IY LM +DSY R++ S +YK++
Sbjct: 365 INIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 415

>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain Of Rgs2 Length = 146

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 42/73 (57%)
Query: 14  VQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYP 73
           + S  R+    +I  +   ++++D + + ++ +N+   ++  F  AQ ++Y+LM  +SYP
Sbjct: 71  LSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYP 130
Query: 74  RFINSTVYKQLAQ 86
           RF+ S  Y+ L +
Sbjct: 131 RFLESEFYQDLCK 143

>pdb|1FQI|A Chain A, Rgs9 Rgs Domain Length = 147

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 34  VSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ 83
           +++D +  +I  + +  P  +  D AQ  IY L  +DSY R++ S +YK+
Sbjct: 88  INIDGKTXDITVKGLKHPHRYVLDAAQTHIYXLXKKDSYARYLKSPIYKE 137

>pdb|2EBZ|A Chain A, Solution Structure Of The Rgs Domain From Human Regulator Of G-Protein Signaling 12 (Rgs12) Length = 155

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ- 83
           ++ +K +  V++DS+  ++ +  + +P    F E QLQI+ LM  DSY RF+ S +Y++ 
Sbjct: 76  FLCSKATTPVNIDSQA-QLADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQEC 134
Query: 84  -LAQLD 88
            LA+++
Sbjct: 135 ILAEVE 140

>pdb|2JNU|A Chain A, Solution Structure Of The Rgs Domain Of Human Rgs14 Length = 154

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 48  MVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ--LAQLDSSPGDTGGNSDSSTP 103
           +  P    F   QLQI+ LM  DSY RF+ S +Y++  LA+ +  P    G+S   +P
Sbjct: 94  LAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAEGRPLREPGSSRLGSP 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
2dlv_A	140	RGS18, regulator of G-protein signaling 18; RGS do	4e-18
3c7l_A	137	Regulator of G-protein signaling 16; RGS, RGS16, G	7e-18
2bv1_A	145	Regulator of G-protein signalling 1; RGS1, RGS, st	2e-17
2af0_A	146	Regulator of G-protein signaling 2; helix, structu	2e-17
1zv4_X	158	RGS17, regulator of G-protein signaling 17; human	5e-17
1fqi_A	147	RGS9, regulator of G-protein signaling 9; phototra	6e-17
2oj4_A	127	RGS3, regulator of G-protein signaling 3, RGP3; RG	6e-17
2a72_A	146	Regulator of G-protein signalling 7; human RGS7, r	1e-16
1agr_E	205	RGS4; GI-alpha-1, hydrolase, signal transduction,	2e-16
2crp_A	150	RGS5, regulator of G-protein signaling 5; RGS doma	2e-16
1cmz_A	152	Protein (GAIP (G-alpha interacting) protein); RGS,	2e-16
2ihd_A	155	RGS8, regulator of G-protein signaling 8; signalin	3e-16
2jm5_A	151	RGS18, regulator of G-protein signaling 18; signal	4e-16
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	6e-16
2dlr_A	149	RGS10, regulator of G-protein signaling 10; RGS do	6e-15
2jnu_A	154	RGS14, regulator of G-protein signaling 14; regula	1e-14
2ihb_B	153	Regulator of G-protein signalling 10, guanine nucl	1e-14
1dk8_A	147	Axin; alpha-helix, PI-helix, signaling protein; HE	9e-14
2ebz_A	155	RGS12, regulator of G-protein signaling 12; RGS do	1e-13
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04

>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 140

 Score = 73.1 bits (179), Expect = 4e-18
 Identities = 25/66 (37%), Positives = 40/66 (60%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I T    +V+LD   +E++  ++  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L
Sbjct: 74  FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 133

Query: 85  AQLDSS 90
               SS
Sbjct: 134 MSGPSS 139

>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B* Length = 137

 Score = 72.3 bits (177), Expect = 7e-18
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           YI ++   +V++D   RE+   N+ + +   FD AQ +  TLM +DSYPRF+ S  Y+ L
Sbjct: 77  YIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDL 136

Query: 85  A 85
           A
Sbjct: 137 A 137

>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C* Length = 145

 Score = 71.5 bits (175), Expect = 2e-17
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++++  + ++++D R RE   + + +P+   FDEAQ  IYTLM +DSYPRF+ S +Y  L
Sbjct: 80  FVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNL 139

Query: 85  AQ 86
             
Sbjct: 140 LN 141

>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B* Length = 146

 Score = 71.6 bits (175), Expect = 2e-17
 Identities = 17/62 (27%), Positives = 38/62 (61%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I  +   ++++D + + ++ +N+   ++  F  AQ ++Y+LM  +SYPRF+ S  Y+ L
Sbjct: 82  FIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDL 141

Query: 85  AQ 86
            +
Sbjct: 142 CK 143

>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens} Length = 158

 Score = 70.8 bits (173), Expect = 5e-17
 Identities = 36/62 (58%), Positives = 50/62 (80%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           YI+     +VSLDSRVRE++NRN++ P+ H +++AQLQIYTLMHRDS+PRF+NS +YK  
Sbjct: 92  YISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSF 151

Query: 85  AQ 86
            +
Sbjct: 152 VE 153

>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B* Length = 147

 Score = 70.5 bits (172), Expect = 6e-17
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++       +++D +  +I  + +  P  +  D AQ  IY LM +DSY R++ S +YK++
Sbjct: 79  FLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 138

Query: 85  AQLDSSP 91
                 P
Sbjct: 139 LAKAIEP 145

>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens} Length = 127

 Score = 69.6 bits (170), Expect = 6e-17
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           YI  +   +V+LDS  RE    N+ S +   FD AQ +I+ LM +DSYPRF+ S +Y  L
Sbjct: 66  YIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 125

>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A Length = 146

 Score = 69.7 bits (170), Expect = 1e-16
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++       ++LDS+  +    N+  P  +TF++AQ  IY LM  DSYPRFI S+ Y++L
Sbjct: 71  FLAPGAPSAINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQEL 130

Query: 85  AQLDSSPGDTGGNSDS 100
            Q     G++     S
Sbjct: 131 LQAKKKSGNSMDRRTS 146

>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A Length = 205

 Score = 70.6 bits (172), Expect = 2e-16
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I+ + + +V+LDS  RE  +RNM+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L
Sbjct: 118 FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 177

Query: 85  AQLDSSPGDTGGNSDSSTP 103
               S   +    + SS  
Sbjct: 178 TNPSSCGAEKQKGAKSSAD 196

>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 150

 Score = 69.3 bits (169), Expect = 2e-16
 Identities = 26/66 (39%), Positives = 42/66 (63%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I T+   +V++D   ++I  +N+V PS  +FD AQ +I+ LM +DS PRF+ S  Y++L
Sbjct: 84  FIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQEL 143

Query: 85  AQLDSS 90
               SS
Sbjct: 144 ISGPSS 149

>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1 Length = 152

 Score = 69.3 bits (169), Expect = 2e-16
 Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ- 83
           Y++     +VSLDSRVRE +N+ M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+  
Sbjct: 79  YVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 138

Query: 84  LAQLDSSP 91
           L  +DSS 
Sbjct: 139 LPWVDSSS 146

>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A Length = 155

 Score = 68.9 bits (168), Expect = 3e-16
 Identities = 22/60 (36%), Positives = 40/60 (66%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +++ +   +V++D + RE   +N+  PS   FD+AQ ++++LM +DSYPRF+ S +Y  L
Sbjct: 94  FVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDL 153

>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A Length = 151

 Score = 68.1 bits (166), Expect = 4e-16
 Identities = 24/77 (31%), Positives = 40/77 (51%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I T    +V+LD   +E++  ++  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L
Sbjct: 70  FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 129

Query: 85  AQLDSSPGDTGGNSDSS 101
            +              S
Sbjct: 130 MEGRPQRPTNLRRRSRS 146

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 424

 Score = 71.0 bits (173), Expect = 6e-16
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++       +++D +  +I  + +  P  +  D AQ  IY LM +DSY R++ S +YK++
Sbjct: 356 FLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 415

Query: 85  AQLDSSP 91
                 P
Sbjct: 416 LAKAIEP 422

>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 149

 Score = 65.4 bits (159), Expect = 6e-15
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++++K S +V+++ + R +  + +  P    F + Q QI+ LM  DSY RF+ S ++ + 
Sbjct: 74  FLSSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKH 132

Query: 85  AQLDSS 90
            + +  
Sbjct: 133 KRTEEE 138

>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} Length = 154

 Score = 64.7 bits (157), Expect = 1e-14
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +++++    V++D +   +    +  P    F   QLQI+ LM  DSY RF+ S +Y++ 
Sbjct: 72  FLSSQALSPVNIDRQAW-LGEEVLAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYREC 130

Query: 85  --AQLDSSPGDTGGNSDSSTP 103
             A+ +  P    G+S   +P
Sbjct: 131 LLAEAEGRPLREPGSSRLGSP 151

>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A Length = 153

 Score = 64.7 bits (157), Expect = 1e-14
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++++K S +V+++ + R +  + +  P    F + Q QI+ LM  DSY RF+ S ++ + 
Sbjct: 90  FLSSKASSQVNVEGQSR-LNEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKH 148

Query: 85  AQ 86
            +
Sbjct: 149 KR 150

>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A Length = 147

 Score = 62.0 bits (150), Expect = 9e-14
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 22  ARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVY 81
                   +  K +  S ++  + + ++ P    FD+AQ +I   M  ++YP F+ S +Y
Sbjct: 77  LDNNGIVSRQTKPATKSFIKGCIMKQLIDP--AMFDQAQTEIQATMEENTYPSFLKSDIY 134

Query: 82  KQ-LAQLDSSP 91
            +       SP
Sbjct: 135 LEYTRTGSESP 145

>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 155

 Score = 62.0 bits (150), Expect = 1e-13
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQ- 83
           ++ +K +  V++DS+ + + +  + +P    F E QLQI+ LM  DSY RF+ S +Y++ 
Sbjct: 76  FLCSKATTPVNIDSQAQ-LADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQEC 134

Query: 84  LAQLDSSPGDTGGNSDSSTPA 104
           +                S+PA
Sbjct: 135 ILAEVEGRALPDSQQVPSSPA 155

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 26/53 (49%)

Query: 29 KQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRF-INSTV 80
          KQ+ K  L                     +A L++Y     DS P   I +T+
Sbjct: 19 KQALK-KL---------------------QASLKLYA---DDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
2dlv_A	140	RGS18, regulator of G-protein signaling 18; RGS do	99.87
1fqi_A	147	RGS9, regulator of G-protein signaling 9; phototra	99.87
2oj4_A	127	RGS3, regulator of G-protein signaling 3, RGP3; RG	99.87
2dlr_A	149	RGS10, regulator of G-protein signaling 10; RGS do	99.87
1zv4_X	158	RGS17, regulator of G-protein signaling 17; human	99.86
2jm5_A	151	RGS18, regulator of G-protein signaling 18; signal	99.86
2a72_A	146	Regulator of G-protein signalling 7; human RGS7, r	99.86
2crp_A	150	RGS5, regulator of G-protein signaling 5; RGS doma	99.86
3c7l_A	137	Regulator of G-protein signaling 16; RGS, RGS16, G	99.86
2af0_A	146	Regulator of G-protein signaling 2; helix, structu	99.86
1cmz_A	152	Protein (GAIP (G-alpha interacting) protein); RGS,	99.85
2bv1_A	145	Regulator of G-protein signalling 1; RGS1, RGS, st	99.85
2ihd_A	155	RGS8, regulator of G-protein signaling 8; signalin	99.85
2ebz_A	155	RGS12, regulator of G-protein signaling 12; RGS do	99.83
1dk8_A	147	Axin; alpha-helix, PI-helix, signaling protein; HE	99.83
1agr_E	205	RGS4; GI-alpha-1, hydrolase, signal transduction,	99.83
2ihb_B	153	Regulator of G-protein signalling 10, guanine nucl	99.83
2jnu_A	154	RGS14, regulator of G-protein signaling 14; regula	99.82
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	99.78
3cx8_B	203	RHO guanine nucleotide exchange factor 11; signal	97.54
1iap_A	211	Guanine nucleotide exchange factor P115rhogef; RGS	96.35
3ab3_B	246	RHO guanine nucleotide exchange factor 1; signal t	95.18
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	95.14
4gou_A	518	EHRGS-rhogef; RGS domain, DH domain, PH domain, RH	94.33
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	88.26

>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=1e-22  Score=140.56  Aligned_cols=84  Identities=30%  Similarity=0.543  Sum_probs=78.8

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+..++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus        55 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~~~l~~p~~~~F~~aq~~V~~~m~~d~~~rFl~S~~y~~~l  134 (140)
T 2dlv_A           55 KKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLM  134 (140)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTTSSSSTTCCCCCHHHHHHHHHGGGSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHCCCCCccccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcchhhccCHHHHHHH
Confidence            55555678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC
Q psy1250          86 QLDS   89 (111)
Q Consensus        86 ~~~~   89 (111)
                      +..+
T Consensus       135 ~~~~  138 (140)
T 2dlv_A          135 SGPS  138 (140)
T ss_dssp             CCSS
T ss_pred             Hhcc
Confidence            8764

>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*

Probab=99.87  E-value=2e-22  Score=140.77  Aligned_cols=84  Identities=24%  Similarity=0.491  Sum_probs=78.4

Q ss_pred             CChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc
Q psy1250           9 GRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD   88 (111)
Q Consensus         9 ~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~   88 (111)
                      .+.+++...|+.||++||+++||.+||||+.+|+.|.+++..|++++||.||.+|+.+|+.|+||||++|+.|.++++..
T Consensus        63 ~~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~  142 (147)
T 1fqi_A           63 GDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKA  142 (147)
T ss_dssp             SCGGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHHTHHHHHTSHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCCcccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcHHHHhcCHHHHHHHHHh
Confidence            35678999999999999999999999999999999999998999999999999999999999999999999999999987


Q ss_pred             CCCC
Q psy1250          89 SSPG   92 (111)
Q Consensus        89 ~~~~   92 (111)
                      ..|.
T Consensus       143 ~~p~  146 (147)
T 1fqi_A          143 IEPQ  146 (147)
T ss_dssp             CCC-
T ss_pred             hCCC
Confidence            6653

>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}

Probab=99.87  E-value=8.7e-23  Score=138.52  Aligned_cols=81  Identities=35%  Similarity=0.543  Sum_probs=76.4

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+.+++...|+.||++||+++||.+||||+.+|+.|.+.+..|++++||.||.+|+.+|+.|+||||++|+.|.+++
T Consensus        47 k~~~~~~~~~~~a~~I~~~yi~~~s~~evni~~~~r~~i~~~l~~~~~~~F~~aq~~v~~~m~~d~~~rFl~S~~y~~~l  126 (127)
T 2oj4_A           47 KKVKSQSKMASKAKKIFAEYIAIQACKEVNLDSYTREHTKDNLQSVTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI  126 (127)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHTTSSCCTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHTTT
T ss_pred             hcCCCHHHHHHHHHHHHHHHccCCCCcCccCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhhhccCHHHHHHh
Confidence            55667788999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             H
Q psy1250          86 Q   86 (111)
Q Consensus        86 ~   86 (111)
                      +
T Consensus       127 ~  127 (127)
T 2oj4_A          127 N  127 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=8.1e-23  Score=142.85  Aligned_cols=86  Identities=22%  Similarity=0.400  Sum_probs=79.1

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+..++...|+.||++||.++||.+|||+..+|. +...+..|++++||.||.+|+.+|+.|+||||++|+.|.+++
T Consensus        55 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~-~~~~~~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l  133 (149)
T 2dlr_A           55 KKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSRL-NEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHK  133 (149)
T ss_dssp             HHHCCHHHHHHHHHHHHTTTSSTTCSSCCCCSCGGGC-CHHHHHSCCTTHHHHHHHHHHHHHHHTTHHHHHHSHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHcCCCCCccccCCHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHhcCHHHHHHH
Confidence            5556677899999999999999999999999999998 888888899999999999999999999999999999999999


Q ss_pred             HhcCCCC
Q psy1250          86 QLDSSPG   92 (111)
Q Consensus        86 ~~~~~~~   92 (111)
                      +..+.+.
T Consensus       134 ~~~~~~~  140 (149)
T 2dlr_A          134 RTEEEEE  140 (149)
T ss_dssp             HHHSCCC
T ss_pred             Hhhcccc
Confidence            9876643

>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}

Probab=99.86  E-value=2.7e-22  Score=142.05  Aligned_cols=85  Identities=45%  Similarity=0.785  Sum_probs=78.6

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+++++...|+.||++||.++||.+||||..+|+.|.+.+..|++++|+.||.+|+.+|+.|+||||++|+.|.+++
T Consensus        73 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~lm~~d~fprFl~S~~y~~~l  152 (158)
T 1zv4_X           73 KKEQNKKVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKSFV  152 (158)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHTCCC-CCCCCCCHHHHHHHHHTTSSCCTTTTHHHHHHHHHHHHHTTHHHHTTSHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHCCCCCCceeecCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHChHHhHhcCHHHHHHH
Confidence            55667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC
Q psy1250          86 QLDSS   90 (111)
Q Consensus        86 ~~~~~   90 (111)
                      +..+.
T Consensus       153 ~~~~~  157 (158)
T 1zv4_X          153 ESTAG  157 (158)
T ss_dssp             HHHC-
T ss_pred             HHhcC
Confidence            97653

>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A

Probab=99.86  E-value=2.2e-22  Score=141.02  Aligned_cols=84  Identities=29%  Similarity=0.543  Sum_probs=79.9

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+..++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus        51 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l  130 (151)
T 2jm5_A           51 KKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLM  130 (151)
T ss_dssp             HTCCCHHHHHHHHHHHHHHTTCSSSSSCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHccCcchhhcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHhHhcCHHHHHHH
Confidence            55666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC
Q psy1250          86 QLDS   89 (111)
Q Consensus        86 ~~~~   89 (111)
                      +..+
T Consensus       131 ~~~~  134 (151)
T 2jm5_A          131 EGRP  134 (151)
T ss_dssp             TSCC
T ss_pred             HHhc
Confidence            9876

>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A

Probab=99.86  E-value=3.7e-22  Score=139.09  Aligned_cols=81  Identities=32%  Similarity=0.518  Sum_probs=74.9

Q ss_pred             ChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhcC
Q psy1250          10 RRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS   89 (111)
Q Consensus        10 ~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~~   89 (111)
                      ..+++...|..||++||.++||.+||||+.+|+.|..++..|++++||+||.+|+.+|+.|+||||++|+.|.++++..+
T Consensus        56 ~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~~  135 (146)
T 2a72_A           56 PIKEVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTHNVKEPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKK  135 (146)
T ss_dssp             CGGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHSTTTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHcCCCCcccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhChhHhHhcCHHHHHHHHHhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C
Q psy1250          90 S   90 (111)
Q Consensus        90 ~   90 (111)
                      .
T Consensus       136 ~  136 (146)
T 2a72_A          136 K  136 (146)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=3.3e-22  Score=139.86  Aligned_cols=84  Identities=31%  Similarity=0.501  Sum_probs=79.1

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+.+++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus        65 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l  144 (150)
T 2crp_A           65 KKIKSPAKMAEKAKQIYEEFIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQKRIHALMEKDSLPRFVRSEFYQELI  144 (150)
T ss_dssp             HTCCCTTHHHHHHHHHHHHTSSTTCSSCCSCCHHHHHHHHHTTSSCSSGGGHHHHHHHHHHHHHTHHHHHHHSHHHHHHH
T ss_pred             HccCCHHHHHHHHHHHHHHHccCCCCccCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence            55666678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcC
Q psy1250          86 QLDS   89 (111)
Q Consensus        86 ~~~~   89 (111)
                      +..+
T Consensus       145 ~~~~  148 (150)
T 2crp_A          145 SGPS  148 (150)
T ss_dssp             SSSS
T ss_pred             HHcc
Confidence            8764

>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*

Probab=99.86  E-value=2.5e-22  Score=138.80  Aligned_cols=80  Identities=33%  Similarity=0.539  Sum_probs=75.6

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+.+++...|+.||++||+++||.+||||..+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.++|
T Consensus        58 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l  137 (137)
T 3c7l_A           58 KKIRSATKLASRAHHIFDEYIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRDLA  137 (137)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHTTHHHHHHTSHHHHTTC
T ss_pred             hccCCHHHHHHHHHHHHHHHCCCCCCccCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHChhHhhCcCHHHHHhC
Confidence            56666788999999999999999999999999999999999999999999999999999999999999999999999864

>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*

Probab=99.86  E-value=6.3e-22  Score=137.75  Aligned_cols=82  Identities=24%  Similarity=0.533  Sum_probs=77.6

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+.+++...|+.||++||+++||.+||||+.+|+.|.+.+..|++++|++||.+|+.+|+.|+||||++|+.|.+++
T Consensus        63 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l  142 (146)
T 2af0_A           63 KKTKSPQKLSSKARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFYQDLC  142 (146)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHGGGCCTTTTHHHHHHHHHHHHHTHHHHHHHSHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHCcCCCCcccCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHhHccCHHHHHHH
Confidence            55566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hh
Q psy1250          86 QL   87 (111)
Q Consensus        86 ~~   87 (111)
                      +.
T Consensus       143 ~~  144 (146)
T 2af0_A          143 KK  144 (146)
T ss_dssp             CC
T ss_pred             hc
Confidence            75

>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1

Probab=99.85  E-value=2.7e-22  Score=140.47  Aligned_cols=85  Identities=49%  Similarity=0.720  Sum_probs=76.5

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+.+.+...|+.||++||.++||.+|||++.+|+.|.+.+..|++++||.||.+|+.+|+.|+||||++|+.|.+++
T Consensus        60 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l  139 (152)
T 1cmz_A           60 KAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALL  139 (152)
T ss_dssp             GGTCCSHHHHHHHHHHHHHTTTCSSSCCCSCCSHHHHHHHHHSSSCCTTSTHHHHHHHHHHHHHHTHHHHTTCHHHHTTC
T ss_pred             HhcCCHHHHHHHHHHHHHHHcCCCCCceeeCCHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHChHHhHhcCHHHHHHH
Confidence            56666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC
Q psy1250          86 QLDSS   90 (111)
Q Consensus        86 ~~~~~   90 (111)
                      +..+.
T Consensus       140 ~~~~~  144 (152)
T 1cmz_A          140 PWVDS  144 (152)
T ss_dssp             -----
T ss_pred             HHhCC
Confidence            97764

>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*

Probab=99.85  E-value=1.2e-21  Score=136.31  Aligned_cols=78  Identities=31%  Similarity=0.553  Sum_probs=74.3

Q ss_pred             hhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc
Q psy1250          11 RGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD   88 (111)
Q Consensus        11 ~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~   88 (111)
                      ..++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.++++..
T Consensus        66 ~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~~~  143 (145)
T 2bv1_A           66 SDLLPCKAEEIYKAFVHSDAAKQINIDFRTRESTAKKIKAPTPTCFDEAQKVIYTLMEKDSYPRFLKSDIYLNLLNDL  143 (145)
T ss_dssp             GGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHCCCCCCcccCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhChhhhhccCHHHHHHHHHh
Confidence            345899999999999999999999999999999999999999999999999999999999999999999999999864

>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A

Probab=99.85  E-value=7e-22  Score=139.43  Aligned_cols=81  Identities=31%  Similarity=0.548  Sum_probs=75.9

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+.+++...|+.||++||+++||.+||||..+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus        75 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNI~~~~r~~i~~~l~~p~~~~Fd~aq~~V~~~m~~d~f~rFl~S~~y~~~l  154 (155)
T 2ihd_A           75 KKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLDLL  154 (155)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHTTC
T ss_pred             hccCCHHHHHHHHHHHHHHHCcCCCccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhChhHhhccCHHHHHHH
Confidence            55666788999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             H
Q psy1250          86 Q   86 (111)
Q Consensus        86 ~   86 (111)
                      +
T Consensus       155 ~  155 (155)
T 2ihd_A          155 S  155 (155)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=5.3e-21  Score=134.52  Aligned_cols=78  Identities=27%  Similarity=0.507  Sum_probs=71.2

Q ss_pred             ChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc
Q psy1250          10 RRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD   88 (111)
Q Consensus        10 ~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~   88 (111)
                      +.+++...|+.||++||.++||.+|||++.+| .+...+..|++++||+||.+|+.+|+.|+||||++|+.|.+++...
T Consensus        61 ~~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r-~~~~~~~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~  138 (155)
T 2ebz_A           61 DKKELSYRAREIFSKFLCSKATTPVNIDSQAQ-LADDVLRAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLYQECILAE  138 (155)
T ss_dssp             CHHHHHHHHHHHHHHHSSSSCSSCCSSCGGGC-HHHHHHHSCCTTHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHcCCCCCCccCCCHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHChhHHHhhCHHHHHHHHHH
Confidence            45678999999999999999999999999987 5566666899999999999999999999999999999999998854

>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A

Probab=99.83  E-value=2.1e-21  Score=134.92  Aligned_cols=81  Identities=20%  Similarity=0.345  Sum_probs=75.7

Q ss_pred             ChhhHHHHHHHhHHHHh-CCCCCccccCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHH
Q psy1250          10 RRGNVQSSKRRAARPYI-NTKQSFKVSLDSRVREIVNRNMV--SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ   86 (111)
Q Consensus        10 ~~~~l~~~A~~Iy~~yi-~~~a~~eVNI~~~~r~~i~~~l~--~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~   86 (111)
                      +.+++...|+.||++|| .++||.+||||+.+|..|.+.+.  .|++++||+||.+|+.+|+.|+||||++|+.|.++++
T Consensus        60 ~~~~~~~~a~~Iy~~yi~~~~s~~~vni~~~~r~~i~~~l~~~~~~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l~  139 (147)
T 1dk8_A           60 NEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTR  139 (147)
T ss_dssp             SHHHHHHHHHHHHHHHTSCTTSHHHHHSCHHHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTTTT
T ss_pred             CHHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccccccCHHHHHHHH
Confidence            55688999999999999 99999999999999999999995  5899999999999999999999999999999999998


Q ss_pred             hcCC
Q psy1250          87 LDSS   90 (111)
Q Consensus        87 ~~~~   90 (111)
                      ..+.
T Consensus       140 ~~~~  143 (147)
T 1dk8_A          140 TGSE  143 (147)
T ss_dssp             SCCC
T ss_pred             hccc
Confidence            7754

>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A

Probab=99.83  E-value=2.4e-21  Score=142.99  Aligned_cols=85  Identities=34%  Similarity=0.563  Sum_probs=75.8

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+.+++...|+.||++||.++||.+||||+.+|+.|.+.+..|++++||+||.+|+.+|+.|+||||++|+.|.+++
T Consensus        99 k~~~~~~~~~~~A~~Iy~~YI~~~Sp~evNI~~~~r~~i~~~l~~p~~~lFd~aq~~V~~lM~~d~fprFl~S~~Y~~~l  178 (205)
T 1agr_E           99 KKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDLT  178 (205)
T ss_dssp             HHCCCTTTHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTCC
T ss_pred             hccCCHHHHHHHHHHHHHHHCCCCCchhhhccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHhcCHHHHHHH
Confidence            45555678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC
Q psy1250          86 QLDSS   90 (111)
Q Consensus        86 ~~~~~   90 (111)
                      +..+.
T Consensus       179 ~~~~~  183 (205)
T 1agr_E          179 NPSSC  183 (205)
T ss_dssp             -----
T ss_pred             Hhhcc
Confidence            97764

>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A

Probab=99.83  E-value=1.4e-21  Score=137.19  Aligned_cols=82  Identities=23%  Similarity=0.423  Sum_probs=61.9

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+..++...|+.||++||.++||.+|||+..+|. +...+..|++++||.||.+|+.+|+.|+||||++|+.|.+++
T Consensus        71 k~~~~~~~~~~~a~~Iy~~yi~~~s~~evNi~~~~r~-~~~~~~~p~~~~Fd~aq~~V~~~m~~d~~~rFl~S~~y~~~l  149 (153)
T 2ihb_B           71 KKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSRL-NEKILEEPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLKHK  149 (153)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCC------------CCTTTTHHHHHHHHHHHHHTHHHHHTTSTTTC---
T ss_pred             cCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHChHHhhccCHHHHHHH
Confidence            5566677899999999999999999999999999998 777777899999999999999999999999999999999999


Q ss_pred             Hhc
Q psy1250          86 QLD   88 (111)
Q Consensus        86 ~~~   88 (111)
                      +.+
T Consensus       150 ~~~  152 (153)
T 2ihb_B          150 RTE  152 (153)
T ss_dssp             ---
T ss_pred             hcc
Confidence            865

>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=99.82  E-value=1.9e-21  Score=136.71  Aligned_cols=90  Identities=23%  Similarity=0.424  Sum_probs=70.1

Q ss_pred             hhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhc--
Q psy1250          11 RGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLD--   88 (111)
Q Consensus        11 ~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~--   88 (111)
                      ..++...|+.||++||+++||.+||||+.+| ....++..|++++||+||.+|+.+|+.|+||||++|+.|.+++...  
T Consensus        58 ~~~~~~~a~~Iy~~yi~~~s~~evni~~~~r-~~~~~~~~p~~~~Fd~aq~~V~~lm~~d~~~rFl~S~~y~~~l~~~~e  136 (154)
T 2jnu_A           58 TQQLAQEARNIYQEFLSSQALSPVNIDRQAW-LGEEVLAEPRPDMFRAQQLQIFNLMKFDSYARFVKSPLYRECLLAEAE  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCSSCCCSCCTTC-CCHHHHHSCCTTTTHHHHHHHHHHHHTTHHHHHTTSTTHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccCCcHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHhChhHhhccCHHHHHHHHHHhc
Confidence            4678999999999999999999999999997 3445666899999999999999999999999999999999999854  


Q ss_pred             CCCCCCCCCCCCC
Q psy1250          89 SSPGDTGGNSDSS  101 (111)
Q Consensus        89 ~~~~~~~~~~~~~  101 (111)
                      +.+..+++.+-++
T Consensus       137 ~~p~~~~~~~~~~  149 (154)
T 2jnu_A          137 GRPLREPGSSRLG  149 (154)
T ss_dssp             -------------
T ss_pred             CCCCCCCccccCC
Confidence            3444444443333

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.78  E-value=1.3e-19  Score=146.10  Aligned_cols=83  Identities=23%  Similarity=0.469  Sum_probs=78.6

Q ss_pred             ChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHhcC
Q psy1250          10 RRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQLDS   89 (111)
Q Consensus        10 ~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~~~   89 (111)
                      +.+++...|+.||++||+++||.+||||+.+|+.|.+++..|++++||+||.+|+.+|+.|+||||++|+.|.++++...
T Consensus       341 ~~~~~~~~A~~Iy~~YI~~~Sp~eVNId~~~r~~i~~~l~~P~~~lFd~AQ~~V~~lM~~DsyprFl~S~~Y~~~Lq~~~  420 (424)
T 2pbi_A          341 DQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAKAI  420 (424)
T ss_dssp             CSSSHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHHHHHCB
T ss_pred             CHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhCchHhHhcCHHHHHHHHHcc
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCC
Q psy1250          90 SPG   92 (111)
Q Consensus        90 ~~~   92 (111)
                      .|.
T Consensus       421 ~p~  423 (424)
T 2pbi_A          421 EPQ  423 (424)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F

Probab=97.54  E-value=0.00022  Score=52.35  Aligned_cols=62  Identities=8%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             cCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHh
Q psy1250           7 RAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMV--SPSNHTFDEAQLQIYTLMH   68 (111)
Q Consensus         7 k~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~--~p~~~~Fd~AQ~~I~~lMe   68 (111)
                      +..+.+++...|.+||.+||.++||..|++|..+-..|...|.  +....+|.++|+.+...+.
T Consensus        62 k~~~~Ke~rk~a~ei~stFL~~~ApL~v~vp~~~~~eid~~L~~ee~~R~~f~~~q~~~~~~I~  125 (203)
T 3cx8_B           62 QQTNPKDSRSLGKDIWNIFLEKNAPLRVKIPEMLQAEIDLRLRNNEDPRNVLCEAQEAVMLEIQ  125 (203)
T ss_dssp             HTSCTTTCHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hccChHHHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            4457888999999999999999999999999999999999886  4568899998887776553

>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1

Probab=96.35  E-value=0.0033  Score=46.34  Aligned_cols=43  Identities=7%  Similarity=0.055  Sum_probs=39.0

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHh
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNM   48 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l   48 (111)
                      -+.++.++++..|.+||..||.++||..|++|..+-.+|....
T Consensus        43 Yk~~~~Ke~rk~~~Ei~stFL~~~ApL~v~v~e~i~~eiD~~r   85 (211)
T 1iap_A           43 LGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTR   85 (211)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHTTCC
T ss_pred             HhccChHHHHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Confidence            3566889999999999999999999999999999999998773

>3ab3_B RHO guanine nucleotide exchange factor 1; signal transduction, protein complex, GTP-binding, membrane, transducer, lipoprotein, nucleotide-binding; HET: GDP; 2.40A {Homo sapiens} PDB: 1shz_C*

Probab=95.18  E-value=0.0032  Score=47.33  Aligned_cols=61  Identities=7%  Similarity=0.011  Sum_probs=37.1

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcC-----CChHHHHHHHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVS-----PSNHTFDEAQLQIYTL   66 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~-----p~~~~Fd~AQ~~I~~l   66 (111)
                      -|..+.+++++.|.+||..||.++||..|++|..+-..|.+.+.+     .....|-+||+.+...
T Consensus        97 Yk~~~~Ke~Rk~a~Ei~stFL~~~ApL~v~v~e~ia~eID~~r~~~~~ee~~R~~~~~~r~~~~~e  162 (246)
T 3ab3_B           97 LGSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDRTRADLISEDVQRRFVQEVVQSQQVA  162 (246)
T ss_dssp             HC-------CCTTHHHHHHTTSTTCTTCCCCCTTGGGC------------CHHHHHHHHHHTTHHH
T ss_pred             HhccChHHHHHHHHHHHHHHcCCCCCccccCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHH
Confidence            355678889999999999999999999999999999888887642     2345566665544433

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=95.14  E-value=0.011  Score=50.20  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             CChhhHHHHHHHhHHHHhCCCCCc-cccCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           9 GRRGNVQSSKRRAARPYINTKQSF-KVSLDSRVREIVNRNMV--SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         9 ~~~~~l~~~A~~Iy~~yi~~~a~~-eVNI~~~~r~~i~~~l~--~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      .+.++....++.||++||.+++.. .-.++......+.+.+.  .+++++|....+.|...|..+.|..|+.|..|..++
T Consensus        96 ~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~l~~~~f~~~~~s~~~~r~~  175 (689)
T 3v5w_A           96 ETEEERVARSREIFDSYIMKELLACSHPFSKSATEHVQGHLGKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFC  175 (689)
T ss_dssp             CSHHHHHHHHHHHHTSHHHHHHHSSSSCCCHHHHHHHHHHHHTTCCCTTTTHHHHHHHHHHHTTHHHHHHHHSHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHhcchhhhhccCccchHHHHHHHHhhhhccCChHHHHHHHHHHHHHhccCcccccccChhHHHHH
Confidence            345667788999999999876532 33578888888887764  578899999999999999999999999999999888


Q ss_pred             Hhc
Q psy1250          86 QLD   88 (111)
Q Consensus        86 ~~~   88 (111)
                      +..
T Consensus       176 q~k  178 (689)
T 3v5w_A          176 QWK  178 (689)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            754

>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}

Probab=94.33  E-value=0.068  Score=41.66  Aligned_cols=67  Identities=15%  Similarity=0.274  Sum_probs=55.9

Q ss_pred             hhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHhhCccccccc
Q psy1250          11 RGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMV----SPSNHTFDEAQLQIYTLMHRDSYPRFIN   77 (111)
Q Consensus        11 ~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~----~p~~~~Fd~AQ~~I~~lMe~D~yprFl~   77 (111)
                      ++...+...-|-++|+..++.++||++.++.+.|...+.    +.+.++|.+|.+.-..|+-.+.|.-|++
T Consensus        60 pkvrlealnfikdqfldrnserqvnlsyqiqqsilkklsevtsnapkdvfneakkateyllyteqytyfin  130 (518)
T 4gou_A           60 PKVRLEALNFIKDQFLDRNSERQVNLSYQIQQSILKKLSEVTSNAPKDVFNEAKKATEYLLYTEQYTYFIN  130 (518)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHTCCSSCCTTTTHHHHHHHHHHHHHHTHHHHHH
T ss_pred             chhhHHHHHhHHHHhhcccchhhcchhHHHHHHHHHHHHHHhcCCChHHHHHHHhhhHHhhhHHHHHHHHH
Confidence            333444567788999999999999999999999999985    4678999999999999998888877764

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=88.26  E-value=0.83  Score=37.54  Aligned_cols=78  Identities=8%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             CChhhHHHHHHHhHHHHhCCCCCcccc-CCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHH
Q psy1250           9 GRRGNVQSSKRRAARPYINTKQSFKVS-LDSRVREIVNRNMV-SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ   86 (111)
Q Consensus         9 ~~~~~l~~~A~~Iy~~yi~~~a~~eVN-I~~~~r~~i~~~l~-~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~   86 (111)
                      .+.++....|..|+++|+.++++..+. |+..+...+...+. .+..++|......+...+....|..|+.+..+..+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~~~~~~~  172 (576)
T 2acx_A           93 TPDDKRKACGRNLTQNFLSHTGPDLIPEVPRQLVTNCTQRLEQGPCKDLFQELTRLTHEYLSVAPFADYLDSIYFNRFLQ  172 (576)
T ss_dssp             SCTTTHHHHHHHHHHHHSCSSSCCSSTTCCHHHHHHHHHHHHHCCCTTTTHHHHHHHHHHHTTHHHHHHHTSHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHhcCcccccccccCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHhhccCcchhhcchhhhhhhhh
Confidence            445677888999999999999875443 78888777666665 6788999999999999888777888888887776665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1cmza_	128	a.91.1.1 (A:) Galpha interacting protein, GaIP {Hu	2e-18
d1agre_	128	a.91.1.1 (E:) Regulator of G-protein signaling 4,	8e-18
d2jm5a1	132	a.91.1.1 (A:3-134) Regulator of G-protein signalin	1e-17
d1fqia_	138	a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [	1e-17
d2ik8b1	116	a.91.1.1 (B:65-180) Regulator of G-protein signali	2e-16
d1omwa1	157	a.91.1.1 (A:29-185) G-protein coupled receptor kin	1e-15
d1dk8a_	147	a.91.1.1 (A:) Axin RGS-homologous domain {Human (H	5e-13

>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Galpha interacting protein, GaIP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 2e-18
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           Y++     +VSLDSRVRE +N+ M  PS HTFD+AQLQIYTLMHRDSYPRF++S  Y+ L
Sbjct: 68  YVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRAL 127

>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 4, RGS4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.8 bits (173), Expect = 8e-18
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I+ + + +V+LDS  RE  +RNM+ P+   FDEAQ +I+ LM +DSY RF+ S  Y  L
Sbjct: 68  FISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL 127

>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]} Length = 132

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 18, RGS18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I T    +V+LD   +E++  ++  P+ H+FD AQ ++Y LM +DSY RF+ S +Y  L
Sbjct: 68  FIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDL 127

Query: 85  AQ 86
            +
Sbjct: 128 ME 129

>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]} Length = 138

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: RGS9, RGS domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           ++       +++D +  +I  + +  P  +  D AQ  IY LM +DSY R++ S +YK++
Sbjct: 72  FLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEM 131

Query: 85  AQLDSSP 91
                 P
Sbjct: 132 LAKAIEP 138

>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 16, RGS16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (163), Expect = 2e-16
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 25  YINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL 84
           +I ++   +V++D   RE+   N+ + +   FD AQ +  TLM +DSYPRF+ S  Y+ L
Sbjct: 57  FICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDL 116

>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 157

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: G-protein coupled receptor kinase 2, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.1 bits (161), Expect = 1e-15
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 29  KQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 86
             S   S  +      +          F     +I   +  D + +FI S  + +  Q
Sbjct: 91  ACSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFTRFCQ 148

>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Axin RGS-homologous domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 5e-13
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 32  FKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ 86
            K +  S ++  + + ++ P    FD+AQ +I   M  ++YP F+ S +Y +  +
Sbjct: 87  TKPATKSFIKGCIMKQLIDP--AMFDQAQTEIQATMEENTYPSFLKSDIYLEYTR 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d2ik8b1	116	Regulator of G-protein signaling 16, RGS16 {Human	99.86
d1fqia_	138	RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1agre_	128	Regulator of G-protein signaling 4, RGS4 {Rat (Rat	99.84
d1cmza_	128	Galpha interacting protein, GaIP {Human (Homo sapi	99.83
d2jm5a1	132	Regulator of G-protein signaling 18, RGS18 {Human	99.83
d1omwa1	157	G-protein coupled receptor kinase 2, N-terminal do	99.74
d1dk8a_	147	Axin RGS-homologous domain {Human (Homo sapiens) [	99.74
d1htjf_	182	Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [	99.27
d1iapa_	190	p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]}	96.54

>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 16, RGS16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.4e-22  Score=132.98  Aligned_cols=79  Identities=30%  Similarity=0.520  Sum_probs=75.5

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL   84 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~   84 (111)
                      |+..+..++...|+.||++||.++|+.+||++..+|+.+..++..|++++|+.||++|+.+|+.|+||+|++|+.|+++
T Consensus        38 ~~~~~~~~~~~~a~~Iy~~yi~~~s~~~~~~~~~~~~~i~~~~~~~~~~~F~~aq~~V~~~le~d~yp~Fl~S~~y~~L  116 (116)
T d2ik8b1          38 KKIRSATKLASRAHQIFEEFICSEAPKEVNIDHETRELTRMNLQTATATCFDAAQGKTRTLMEKDSYPRFLKSPAYRDL  116 (116)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHTHHHHHHTSHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccccccCHhhccC
Confidence            5667888899999999999999999999999999999999999999999999999999999999999999999999975

>d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: RGS9, RGS domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=1e-21  Score=134.23  Aligned_cols=83  Identities=23%  Similarity=0.461  Sum_probs=78.5

Q ss_pred             CCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHHh
Q psy1250           8 AGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQL   87 (111)
Q Consensus         8 ~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~~   87 (111)
                      ..+...+...|..||++||.++|+.+|||++.+|+.|...+..|++++|+.||++|+.+|+.|+||+|++|+.|++++..
T Consensus        55 ~~~~~~~~~~a~~Iy~~yi~~~s~~~vni~~~~r~~i~~~~~~~~~~~F~~aq~~V~~~l~~~~~~~Fl~S~~y~~~l~~  134 (138)
T d1fqia_          55 YGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIYKEMLAK  134 (138)
T ss_dssp             TSCGGGHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHHTHHHHHTSHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHccccccccCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHhHhcCHHHHHHHHh
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cCC
Q psy1250          88 DSS   90 (111)
Q Consensus        88 ~~~   90 (111)
                      ...
T Consensus       135 ~~~  137 (138)
T d1fqia_         135 AIE  137 (138)
T ss_dssp             SCC
T ss_pred             hcC
Confidence            654

>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 4, RGS4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=4.7e-22  Score=134.21  Aligned_cols=79  Identities=35%  Similarity=0.598  Sum_probs=75.2

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQL   84 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~   84 (111)
                      |+..++.++...|..||++||.++||.+||||..+|+.|..++..|++++|+.||++|+.+|+.|+||+|++|+.|+++
T Consensus        49 k~~~~~~~~~~~a~~Iy~~yi~~~s~~~~~l~~~~r~~i~~~~~~~~~~~F~~aq~~V~~~me~~~~p~Fl~S~~Y~~l  127 (128)
T d1agre_          49 KKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYRRFLKSRFYLDL  127 (128)
T ss_dssp             HHCCCTTTHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTC
T ss_pred             hccCCHHHHHHHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCHHhhhc
Confidence            5567888899999999999999999999999999999999999999999999999999999999999999999999875

>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Galpha interacting protein, GaIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.2e-22  Score=132.86  Aligned_cols=80  Identities=51%  Similarity=0.769  Sum_probs=76.0

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+.+.+...|+.||++||.++|+.+|||+..+|+.|..++..+++++|+.||++|+.+|+.|+||+|++|+.|+++|
T Consensus        49 k~~~~~~~~~~~a~~Iy~~yi~~~s~~~~~i~~~~r~~i~~~~~~~~~~~F~~aq~~V~~~l~~~~~p~Fl~S~~y~~lL  128 (128)
T d1cmza_          49 KAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLSSPTYRALL  128 (128)
T ss_dssp             GGTCCSHHHHHHHHHHHHHTTTCSSSCCCSCCSHHHHHHHHHSSSCCTTSTHHHHHHHHHHHHHHTHHHHTTCHHHHTTC
T ss_pred             HccCCHHHHHHHHHHHHHHHhccCCCccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCcchhhccCHHHHHhC
Confidence            56677888999999999999999999999999999999999999999999999999999999999999999999999864

>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Regulator of G-protein signaling 18, RGS18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.5e-21  Score=130.17  Aligned_cols=82  Identities=29%  Similarity=0.556  Sum_probs=78.5

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCccccccccHHHHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLA   85 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l   85 (111)
                      |+..+..++...|..||++||.++|+.+|||+..+|+.|...+..+++++|+.||++|+.+|+.|.||+|++|+.|.+|+
T Consensus        49 k~~~~~~~~~~~a~~Iy~~yi~~~s~~~i~~~~~~~~~i~~~~~~~~~~~F~~aq~~V~~~l~~~~yp~Fl~S~~y~~ll  128 (132)
T d2jm5a1          49 KKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLDLM  128 (132)
T ss_dssp             HTCCCHHHHHHHHHHHHHHTTCSSSSSCCCCCHHHHHHHHHHTTSCCTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HccCCHHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhhhhccCHHHHHHH
Confidence            66778889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Hh
Q psy1250          86 QL   87 (111)
Q Consensus        86 ~~   87 (111)
                      +.
T Consensus       129 ~~  130 (132)
T d2jm5a1         129 EG  130 (132)
T ss_dssp             TS
T ss_pred             cc
Confidence            74

>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: G-protein coupled receptor kinase 2, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=1.3e-19  Score=126.53  Aligned_cols=82  Identities=15%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             ccCCChhhHHHHHHHhHHHHhCCCCCccc-cCCHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHhhCccccccccHHHH
Q psy1250           6 KRAGRRGNVQSSKRRAARPYINTKQSFKV-SLDSRVREIVNRNM--VSPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYK   82 (111)
Q Consensus         6 kk~~~~~~l~~~A~~Iy~~yi~~~a~~eV-NI~~~~r~~i~~~l--~~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~   82 (111)
                      |+..+.+++...|+.||++||.++||..+ +|+..++..+...+  ..|++++|+.||++|+.+|+.|+|||||+|+.|.
T Consensus        65 k~~~~~~~~~~~A~~Iy~kyl~~~s~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~~aq~~V~~lL~~d~fprFl~S~~y~  144 (157)
T d1omwa1          65 EKLETEEERLVCSREIFDTYIMKELLACSHPFSKSAIEHVQGHLVKKQVPPDLFQPYIEEICQNLRGDVFQKFIESDKFT  144 (157)
T ss_dssp             HTCCSHHHHHHHHHHHHHHHTHHHHHTTCCCSCHHHHHHHHHHHTTTCCCTTTTHHHHHHHHHHHTTHHHHHHHTSHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHcccCCcccCccCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcCchHHHhcCHHHH
Confidence            56777889999999999999999997533 34444555555544  4789999999999999999999999999999999


Q ss_pred             HHHHh
Q psy1250          83 QLAQL   87 (111)
Q Consensus        83 ~~l~~   87 (111)
                      ++|+.
T Consensus       145 r~LQw  149 (157)
T d1omwa1         145 RFCQW  149 (157)
T ss_dssp             HHHHH
T ss_pred             HHHhH
Confidence            99974

>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Axin RGS-homologous domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-18  Score=119.67  Aligned_cols=81  Identities=20%  Similarity=0.334  Sum_probs=71.4

Q ss_pred             ChhhHHHHHHHhHHHHhCCCCCcc-ccCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhCccccccccHHHHHHHH
Q psy1250          10 RRGNVQSSKRRAARPYINTKQSFK-VSLDSRVREIVNRNMV--SPSNHTFDEAQLQIYTLMHRDSYPRFINSTVYKQLAQ   86 (111)
Q Consensus        10 ~~~~l~~~A~~Iy~~yi~~~a~~e-VNI~~~~r~~i~~~l~--~p~~~~Fd~AQ~~I~~lMe~D~yprFl~S~~Y~~~l~   86 (111)
                      +.+++...|+.||++||.++|+.. .+++..++..+...+.  .+++++|+.||.+||.+|+.|+||+|++|+.|.++++
T Consensus        60 ~~~~~~~~A~~Iy~~yi~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~F~~Aq~~V~~lme~d~~p~Fl~S~~y~~~l~  139 (147)
T d1dk8a_          60 NEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTR  139 (147)
T ss_dssp             SHHHHHHHHHHHHHHHTSCTTSHHHHHSCHHHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHTHHHHHTTSHHHHTTTT
T ss_pred             cHHHHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhCcccccccCHHHHHHHH
Confidence            345788899999999999999874 5688889888888775  5899999999999999999999999999999999998


Q ss_pred             hcCC
Q psy1250          87 LDSS   90 (111)
Q Consensus        87 ~~~~   90 (111)
                      ..+.
T Consensus       140 ~~~~  143 (147)
T d1dk8a_         140 TGSE  143 (147)
T ss_dssp             SCCC
T ss_pred             ccCC
Confidence            6654

>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: Pdz-RhoGEF RGS-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.2e-12  Score=89.70  Aligned_cols=63  Identities=8%  Similarity=0.144  Sum_probs=57.7

Q ss_pred             cCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhh
Q psy1250           7 RAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMV--SPSNHTFDEAQLQIYTLMHR   69 (111)
Q Consensus         7 k~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~--~p~~~~Fd~AQ~~I~~lMe~   69 (111)
                      |.++.+++...|..||++||.++||++||||..++..|...+.  .+.+++|++||+.|+.+|+.
T Consensus        45 k~~~~k~~~~~a~~Iy~~FL~~~Ap~~Vnid~~i~~~i~~~L~~ee~~~~~F~~aQ~~v~~~i~~  109 (182)
T d1htjf_          45 QQASPKDSRSLGKDIWNIFLEKNAPLRVKIPEMLQAEIDSRLRNSEDARGVLCEAQEAAMPEIQE  109 (182)
T ss_dssp             TTSCTTHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHcCCCCCCcccCCHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999999986  46789999999999999985

>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Regulator of G-protein signaling, RGS
superfamily: Regulator of G-protein signaling, RGS
family: Regulator of G-protein signaling, RGS
domain: p115RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0015  Score=45.85  Aligned_cols=59  Identities=7%  Similarity=0.018  Sum_probs=46.0

Q ss_pred             cCCChhhHHHHHHHhHHHHhCCCCCccccCCHHHHHHHHHHhcC------CChHHHHHHHHHHHHH
Q psy1250           7 RAGRRGNVQSSKRRAARPYINTKQSFKVSLDSRVREIVNRNMVS------PSNHTFDEAQLQIYTL   66 (111)
Q Consensus         7 k~~~~~~l~~~A~~Iy~~yi~~~a~~eVNI~~~~r~~i~~~l~~------p~~~~Fd~AQ~~I~~l   66 (111)
                      +..+.+++++.|.+||.+||.++||..|++|..+-.+|.+ +..      ....+|..+|+.+...
T Consensus        42 k~~~~Kd~rk~~~Ei~stFL~~~ApL~v~v~e~ia~eid~-~~~e~~~ee~~R~~~~~~~~~~~~~  106 (190)
T d1iapa_          42 GSLGPKEAKKAFLDFYHSFLEKTAVLRVPVPPNVAFELDR-TRADLISEDVQRRFVQEVVQSQQVA  106 (190)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTSTTCTTCCCCCHHHHHHHTT-CCTTTCCHHHHHHHHHHHHHTTHHH
T ss_pred             hccChHHHHHHHHHHHHHHcCCCCCccccCcHHHHHHHHh-hhhhhChHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999988885 431      1245577777644443