Psyllid ID: psy12528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MYRDYKGTVDITLPARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPEGNV
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccccccEEEEcccccccccccccccEEEEEccccccccccccccccccHHHHHHHcccccccEEEcccccccccccEEcccccEEEEcccccEEEccccccccccccccccccccccHHHHHHHccccccEEEEccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHccccccccEEEEcccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEEEccccccEccccccEEEEEEEccccccccccEEEEcccHHHHHHHHHccccccEEcccEEEEEccccccccccEEEEEEEcccEEEEcccccccHHccccccHHHHHHHHHHHHHHcHHHHHHEEEcccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
myrdykgtvditlparpgmerfsftvlgqvtvpqisileprlgddlnltlsmnptlvGRRAMKSLKFQNTSKVRAQLLhghnnfsfttnnsdlllssarrdedgylWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAClashpdvseaavvsrphpvkgeclycfitpaggatFNQELVKQLKQQVREkigpfampdviqhaprlpktrsgkiMRRVLRKVAVndrevgdkstladEDVVDELFqnrpegnv
Flexible Loop (DISEMBL)
myrdykgtvditlparpgmERFSFTVLGQVTVPQISILeprlgddlnLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPfampdviqhaprlpktrsgkimrrvlrkvavndrevgdkstladedvvdelfqnrpegnv
Low Complexity Region (SEG)
MYRDYKGTVDITLPARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPEGNV
Disordered region (IsUnstruct)
*******TVDITLPARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQ************IMRRVLRKVA******************************
Disordered Region (DISOPRED)
MYRDYKGTVDITLPARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP****
Disordered Region (DISEMBL)
MYRDYKGTVDITLPARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPEGNV
Disordered Region (DISPRO)
*YRDYKGTVDITLPARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRDYKGTVDITLPARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPEGNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9VP61	670	Acetyl-coenzyme A synthet	yes	N/A	0.558	0.214	0.713	2e-59
Q9QXG4	701	Acetyl-coenzyme A synthet	yes	N/A	0.558	0.205	0.611	6e-50
Q9NR19	701	Acetyl-coenzyme A synthet	no	N/A	0.554	0.203	0.608	2e-49
Q3IFM6	646	Acetyl-coenzyme A synthet	yes	N/A	0.550	0.219	0.538	2e-43
A1U2S9	649	Acetyl-coenzyme A synthet	yes	N/A	0.558	0.221	0.550	1e-41
A5VSF3	651	Acetyl-coenzyme A synthet	yes	N/A	0.558	0.221	0.543	3e-41
Q8YJ48	651	Acetyl-coenzyme A synthet	yes	N/A	0.558	0.221	0.543	3e-41
C0RF62	651	Acetyl-coenzyme A synthet	yes	N/A	0.558	0.221	0.543	3e-41
Q8FYQ3	651	Acetyl-coenzyme A synthet	yes	N/A	0.558	0.221	0.543	3e-41
A9M849	651	Acetyl-coenzyme A synthet	yes	N/A	0.558	0.221	0.543	3e-41

>sp|Q9VP61|ACSA_DROME Acetyl-coenzyme A synthetase OS=Drosophila melanogaster GN=AcCoAS PE=2 SV=1

 Score =  228 bits (582), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 126/157 (80%), Gaps = 13/157 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AVV
Sbjct: 523 ARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAVV 569

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           SRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRSG
Sbjct: 570 SRPHPVKGECLYCFITPNENEVFDQKLISDLKKMVRERIGPFAMPDVIQNAPGLPKTRSG 629

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           KIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 630 KIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 666

Activates acetate so that it can be used for lipid synthesis or for energy generation.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1

>sp|Q9QXG4|ACSA_MOUSE Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus GN=Acss2 PE=1 SV=2

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/157 (61%), Positives = 116/157 (73%), Gaps = 13/157 (8%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
             RRD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  V+EAAV
Sbjct: 553 GCRRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAVAEAAV 599

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V  PHPVKGECLYCF+T   G TF+  L ++LK+Q+REKIGP A PD IQ+AP LPKTRS
Sbjct: 600 VGHPHPVKGECLYCFVTLCDGHTFSPTLTEELKKQIREKIGPIATPDYIQNAPGLPKTRS 659

Query: 217 GKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
           GKIMRRVLRK+A ND ++GD ST+AD  V++ LF +R
Sbjct: 660 GKIMRRVLRKIAQNDHDLGDTSTVADPSVINHLFSHR 696

Activates acetate so that it can be used for lipid synthesis or for energy generation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9NR19|ACSA_HUMAN Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 116/156 (74%), Gaps = 13/156 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            +RD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  V+EAAVV
Sbjct: 554 CQRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAVAEAAVV 600

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PHPVKGECLYCF+T   G TF+ +L ++LK+Q+REKIGP A PD IQ+AP LPKTRSG
Sbjct: 601 GHPHPVKGECLYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSG 660

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
           KIMRRVLRK+A ND ++GD ST+AD  V+  LF +R
Sbjct: 661 KIMRRVLRKIAQNDHDLGDMSTVADPSVISHLFSHR 696

Activates acetate so that it can be used for lipid synthesis or for energy generation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q3IFM6|ACSA_PSEHT Acetyl-coenzyme A synthetase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=acsA PE=3 SV=1

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 110/156 (70%), Gaps = 14/156 (8%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
           RRDEDGY W+TGRVDD+LN+SGH +                E+E+ L +HP V+EAAVV 
Sbjct: 501 RRDEDGYYWITGRVDDVLNISGHRLGT-------------AEIESALVAHPAVAEAAVVG 547

Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
            PH +KG+ +Y +ITP  G T + EL K+++  VR+++ P A PD+IQ +P LPKTRSGK
Sbjct: 548 YPHDIKGQGIYVYITPNEGITVSDELTKEIRNWVRKELSPIASPDMIQWSPGLPKTRSGK 607

Query: 219 IMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNR 253
           IMRR+LRK+A N+ E +GD STLAD  VVDEL +NR
Sbjct: 608 IMRRILRKIAANEHEQLGDTSTLADPSVVDELIENR 643

Pseudoalteromonas haloplanktis (strain TAC 125) (taxid: 326442)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A1U2S9|ACSA_MARAV Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 108/158 (68%), Gaps = 14/158 (8%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
            ARRDEDGY W+TGRVDD+LNVSGH +                EVE+ L +H  V+EAAV
Sbjct: 502 GARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEVESALVAHDKVAEAAV 548

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V  PH +KG+ +Y ++T   G   + EL K+L Q VR++IGP A PDVIQ AP LPKTRS
Sbjct: 549 VGYPHDIKGQGIYVYVTLVQGEEPSDELKKELVQWVRKEIGPIASPDVIQWAPGLPKTRS 608

Query: 217 GKIMRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQNR 253
           GKIMRR+LRK+A N+  ++GD STLAD  VVDEL  +R
Sbjct: 609 GKIMRRILRKIAANEHDQLGDTSTLADPGVVDELISSR 646

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A5VSF3|ACSA_BRUO2 Acetyl-coenzyme A synthetase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=acsA PE=3 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 16/160 (10%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
             RRDEDGY W+TGRVDD+LN+SGH +                E+E+ L SH  VSEAAV
Sbjct: 501 GCRRDEDGYYWITGRVDDVLNISGHRLGT-------------AEIESALVSHHSVSEAAV 547

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
           V  PHP+KG+ +YC++T   GA      EL K+L Q VR++IGP A PD IQ AP LPKT
Sbjct: 548 VGYPHPIKGQGIYCYVTLMTGADAQDPDELRKELVQHVRKEIGPIATPDKIQFAPGLPKT 607

Query: 215 RSGKIMRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQNR 253
           RSGKIMRR+LRK+A ++   +GD STLAD  VVD+L +NR
Sbjct: 608 RSGKIMRRILRKIAEDESGALGDTSTLADPGVVDDLIENR 647

Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) (taxid: 444178)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8YJ48|ACSA_BRUME Acetyl-coenzyme A synthetase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=acsA PE=3 SV=2

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 16/160 (10%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
             RRDEDGY W+TGRVDD+LN+SGH +                E+E+ L SH  VSEAAV
Sbjct: 501 GCRRDEDGYYWITGRVDDVLNISGHRLGT-------------AEIESALVSHHSVSEAAV 547

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
           V  PHP+KG+ +YC++T   GA      EL K+L Q VR++IGP A PD IQ AP LPKT
Sbjct: 548 VGYPHPIKGQGIYCYVTLMTGADAQDPDELRKELVQHVRKEIGPIATPDKIQFAPGLPKT 607

Query: 215 RSGKIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           RSGKIMRR+LRK+A ++   +GD STLAD  VVD+L +NR
Sbjct: 608 RSGKIMRRILRKIAEDEFGALGDTSTLADRGVVDDLIENR 647

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|C0RF62|ACSA_BRUMB Acetyl-coenzyme A synthetase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=acsA PE=3 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 16/160 (10%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
             RRDEDGY W+TGRVDD+LN+SGH +                E+E+ L SH  VSEAAV
Sbjct: 501 GCRRDEDGYYWITGRVDDVLNISGHRLGT-------------AEIESALVSHHSVSEAAV 547

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
           V  PHP+KG+ +YC++T   GA      EL K+L Q VR++IGP A PD IQ AP LPKT
Sbjct: 548 VGYPHPIKGQGIYCYVTLMTGADAQDPDELRKELVQHVRKEIGPIATPDKIQFAPGLPKT 607

Query: 215 RSGKIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           RSGKIMRR+LRK+A ++   +GD STLAD  VVD+L +NR
Sbjct: 608 RSGKIMRRILRKIAEDEFGALGDTSTLADRGVVDDLIENR 647

Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8FYQ3|ACSA_BRUSU Acetyl-coenzyme A synthetase OS=Brucella suis biovar 1 (strain 1330) GN=acsA PE=3 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 16/160 (10%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
             RRDEDGY W+TGRVDD+LN+SGH +                E+E+ L SH  VSEAAV
Sbjct: 501 GCRRDEDGYYWITGRVDDVLNISGHRLGT-------------AEIESALVSHHSVSEAAV 547

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
           V  PHP+KG+ +YC++T   GA      EL K+L Q VR++IGP A PD IQ AP LPKT
Sbjct: 548 VGYPHPIKGQGIYCYVTLMTGADAQDPDELRKELVQHVRKEIGPIATPDKIQFAPGLPKT 607

Query: 215 RSGKIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           RSGKIMRR+LRK+A ++   +GD STLAD  VVD+L +NR
Sbjct: 608 RSGKIMRRILRKIAEDEFGALGDTSTLADPGVVDDLIENR 647

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|A9M849|ACSA_BRUC2 Acetyl-coenzyme A synthetase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=acsA PE=3 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 16/160 (10%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
             RRDEDGY W+TGRVDD+LN+SGH +                E+E+ L SH  VSEAAV
Sbjct: 501 GCRRDEDGYYWITGRVDDVLNISGHRLGT-------------AEIESALVSHHSVSEAAV 547

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
           V  PHP+KG+ +YC++T   GA      EL K+L Q VR++IGP A PD IQ AP LPKT
Sbjct: 548 VGYPHPIKGQGIYCYVTLMTGADAQDPDELRKELVQHVRKEIGPIATPDKIQFAPGLPKT 607

Query: 215 RSGKIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           RSGKIMRR+LRK+A ++   +GD STLAD  VVD+L +NR
Sbjct: 608 RSGKIMRRILRKIAEDEFGALGDTSTLADPGVVDDLIENR 647

Brucella canis (strain ATCC 23365 / NCTC 10854) (taxid: 483179)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
237858784	678	acetyl coenzyme A synthase [Acyrthosipho	0.562	0.213	0.753	8e-62
195126635	670	GI12200 [Drosophila mojavensis] gi|19391	0.558	0.214	0.719	4e-58
195592088	674	GD12130 [Drosophila simulans] gi|1941977	0.558	0.213	0.713	1e-57
34922289	670	RecName: Full=Acetyl-coenzyme A syntheta	0.558	0.214	0.713	1e-57
195379032	670	GJ11432 [Drosophila virilis] gi|19415544	0.558	0.214	0.713	1e-57
194749047	670	GF10175 [Drosophila ananassae] gi|190624	0.558	0.214	0.713	1e-57
24667955	670	acetyl coenzyme A synthase, isoform A [D	0.558	0.214	0.713	1e-57
58388862	669	AGAP006569-PA [Anopheles gambiae str. PE	0.666	0.257	0.601	1e-57
25012190	524	GM15363p [Drosophila melanogaster]	0.562	0.276	0.708	2e-57
24667959	524	acetyl coenzyme A synthase, isoform B [D	0.562	0.276	0.708	2e-57

>gi|237858784|ref|NP_001153823.1| acetyl coenzyme A synthase [Acyrthosiphon pisum]

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 129/158 (81%), Gaps = 13/158 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY WVTGRVDDMLNVSGHLM         STA    EVE+ L  HPDVSEAAVV
Sbjct: 532 ARRDEDGYFWVTGRVDDMLNVSGHLM---------STA----EVESVLTEHPDVSEAAVV 578

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           SRPHP+KGECLYCFITP  G TF  +L  +L ++VRE IGPFAMPDVIQHAP LPKTRSG
Sbjct: 579 SRPHPIKGECLYCFITPNHGVTFTPQLSSELVKKVRESIGPFAMPDVIQHAPGLPKTRSG 638

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255
           KIMRRVLRKVA+NDREVGD STLADE +V+ELF+NRPE
Sbjct: 639 KIMRRVLRKVAINDREVGDISTLADEHIVEELFKNRPE 676

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126635|ref|XP_002007776.1| GI12200 [Drosophila mojavensis] gi|193919385|gb|EDW18252.1| GI12200 [Drosophila mojavensis]

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 113/157 (71%), Positives = 127/157 (80%), Gaps = 13/157 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AVV
Sbjct: 523 ARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAVV 569

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           SRPHPVKGECLYCFITP    TF+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRSG
Sbjct: 570 SRPHPVKGECLYCFITPNENETFDQKLIADLKKMVRERIGPFAMPDVIQNAPGLPKTRSG 629

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           KIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 630 KIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 666

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195592088|ref|XP_002085768.1| GD12130 [Drosophila simulans] gi|194197777|gb|EDX11353.1| GD12130 [Drosophila simulans]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 126/157 (80%), Gaps = 13/157 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AVV
Sbjct: 527 ARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAVV 573

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           SRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRSG
Sbjct: 574 SRPHPVKGECLYCFITPNENEVFDQKLISDLKKMVRERIGPFAMPDVIQNAPGLPKTRSG 633

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           KIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 634 KIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 670

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|34922289|sp|Q9VP61.1|ACSA_DROME RecName: Full=Acetyl-coenzyme A synthetase; AltName: Full=Acetate--CoA ligase; AltName: Full=Acetyl-CoA synthetase; Short=ACS; Short=AceCS; AltName: Full=Acyl-activating enzyme gi|19528327|gb|AAL90278.1| LD12826p [Drosophila melanogaster]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 126/157 (80%), Gaps = 13/157 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AVV
Sbjct: 523 ARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAVV 569

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           SRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRSG
Sbjct: 570 SRPHPVKGECLYCFITPNENEVFDQKLISDLKKMVRERIGPFAMPDVIQNAPGLPKTRSG 629

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           KIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 630 KIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 666

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195379032|ref|XP_002048285.1| GJ11432 [Drosophila virilis] gi|194155443|gb|EDW70627.1| GJ11432 [Drosophila virilis]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 126/157 (80%), Gaps = 13/157 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AVV
Sbjct: 523 ARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAVV 569

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           SRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRSG
Sbjct: 570 SRPHPVKGECLYCFITPNENEAFDQKLIADLKKMVRERIGPFAMPDVIQNAPGLPKTRSG 629

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           KIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 630 KIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 666

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194749047|ref|XP_001956951.1| GF10175 [Drosophila ananassae] gi|190624233|gb|EDV39757.1| GF10175 [Drosophila ananassae]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 126/157 (80%), Gaps = 13/157 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AVV
Sbjct: 523 ARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAVV 569

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           SRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRSG
Sbjct: 570 SRPHPVKGECLYCFITPNENEVFDQKLISDLKKMVRERIGPFAMPDVIQNAPGLPKTRSG 629

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           KIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 630 KIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 666

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24667955|ref|NP_730611.1| acetyl coenzyme A synthase, isoform A [Drosophila melanogaster] gi|442633865|ref|NP_001014599.2| acetyl coenzyme A synthase, isoform D [Drosophila melanogaster] gi|23094223|gb|AAF51695.2| acetyl coenzyme A synthase, isoform A [Drosophila melanogaster] gi|329112613|gb|AEB72010.1| FI04028p [Drosophila melanogaster] gi|440216111|gb|AAX52767.2| acetyl coenzyme A synthase, isoform D [Drosophila melanogaster]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/157 (71%), Positives = 126/157 (80%), Gaps = 13/157 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AVV
Sbjct: 523 ARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAVV 569

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           SRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRSG
Sbjct: 570 SRPHPVKGECLYCFITPNENEVFDQKLISDLKKMVRERIGPFAMPDVIQNAPGLPKTRSG 629

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           KIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 630 KIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 666

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58388862|ref|XP_316594.2| AGAP006569-PA [Anopheles gambiae str. PEST] gi|55239326|gb|EAA11289.2| AGAP006569-PA [Anopheles gambiae str. PEST]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 135/193 (69%), Gaps = 21/193 (10%)

Query: 62  MKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH 121
           M++L F N  +  +      N +  T +        ARRD DGY WVTGRVDDMLNVSGH
Sbjct: 496 MRTL-FNNHPRYESTYFSKFNGYYCTGDG-------ARRDADGYFWVTGRVDDMLNVSGH 547

Query: 122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN 181
           LM+              +EVE+ L  HP VSEAAVVSRPHPVKGECLYCFITP     F+
Sbjct: 548 LMST-------------SEVESVLTEHPRVSEAAVVSRPHPVKGECLYCFITPNQNEAFD 594

Query: 182 QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLA 241
           + L+ +LK  VRE+IGPFA PDVIQHAP LPKTRSGKIMRRVLRKVAVNDR+VGD STLA
Sbjct: 595 KTLISELKVLVRERIGPFAQPDVIQHAPGLPKTRSGKIMRRVLRKVAVNDRDVGDTSTLA 654

Query: 242 DEDVVDELFQNRP 254
           DE ++++LF NRP
Sbjct: 655 DEAIIEQLFANRP 667

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|25012190|gb|AAN71211.1| GM15363p [Drosophila melanogaster]

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 126/158 (79%), Gaps = 13/158 (8%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
            ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AV
Sbjct: 376 GARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAV 422

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           VSRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRS
Sbjct: 423 VSRPHPVKGECLYCFITPNENEVFDQKLISDLKKMVRERIGPFAMPDVIQNAPGLPKTRS 482

Query: 217 GKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           GKIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 483 GKIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 520

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24667959|ref|NP_524196.2| acetyl coenzyme A synthase, isoform B [Drosophila melanogaster] gi|23094224|gb|AAF51696.3| acetyl coenzyme A synthase, isoform B [Drosophila melanogaster]

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 126/158 (79%), Gaps = 13/158 (8%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
            ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AV
Sbjct: 376 GARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAV 422

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           VSRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRS
Sbjct: 423 VSRPHPVKGECLYCFITPNENEVFDQKLISDLKKMVRERIGPFAMPDVIQNAPGLPKTRS 482

Query: 217 GKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
           GKIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct: 483 GKIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 520

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
FB|FBgn0012034	670	AcCoAS "Acetyl Coenzyme A synt	0.558	0.214	0.713	4.3e-54
ZFIN|ZDB-GENE-040718-388	698	acss2 "acyl-CoA synthetase sho	0.550	0.203	0.632	3.6e-46
MGI|MGI:1890410	701	Acss2 "acyl-CoA synthetase sho	0.550	0.202	0.619	3.8e-46
RGD|1305489	701	Acss2 "acyl-CoA synthetase sho	0.550	0.202	0.619	3.8e-46
UNIPROTKB|E7EWU3	651	ACSS2 "Acetyl-coenzyme A synth	0.550	0.218	0.612	6.2e-46
UNIPROTKB|Q9NR19	701	ACSS2 "Acetyl-coenzyme A synth	0.550	0.202	0.612	8.7e-46
UNIPROTKB|Q5QPH3	714	ACSS2 "Acetyl-coenzyme A synth	0.550	0.198	0.612	1.1e-45
UNIPROTKB|J9P7N4	701	ACSS2 "Uncharacterized protein	0.550	0.202	0.612	1.1e-45
UNIPROTKB|E2R0C6	714	ACSS2 "Uncharacterized protein	0.550	0.198	0.612	1.4e-45
UNIPROTKB|F1S4Y0	701	ACSS2 "Uncharacterized protein	0.550	0.202	0.606	4.4e-45

FB|FBgn0012034 AcCoAS "Acetyl Coenzyme A synthase" [Drosophila melanogaster (taxid:7227)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 112/157 (71%), Positives = 126/157 (80%)

Query:    98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
             ARRD DGYLW+TGRVDDMLNVSGHLM         STA    EVE+ L  HP V+E+AVV
Sbjct:   523 ARRDADGYLWITGRVDDMLNVSGHLM---------STA----EVESVLTEHPRVAESAVV 569

Query:   158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             SRPHPVKGECLYCFITP     F+Q+L+  LK+ VRE+IGPFAMPDVIQ+AP LPKTRSG
Sbjct:   570 SRPHPVKGECLYCFITPNENEVFDQKLISDLKKMVRERIGPFAMPDVIQNAPGLPKTRSG 629

Query:   218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP 254
             KIMRRVLRK+AVNDR VGD STLADE +V++LF NRP
Sbjct:   630 KIMRRVLRKIAVNDRNVGDTSTLADEQIVEQLFANRP 666

GO:0003987 "acetate-CoA ligase activity" evidence=ISS;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0016208 "AMP binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0048149 "behavioral response to ethanol" evidence=IMP

ZFIN|ZDB-GENE-040718-388 acss2 "acyl-CoA synthetase short-chain family member 2" [Danio rerio (taxid:7955)]

 Score = 485 (175.8 bits), Expect = 3.6e-46, P = 3.6e-46
 Identities = 98/155 (63%), Positives = 117/155 (75%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             RRD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  V+EAAVV 
Sbjct:   552 RRDKDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAVAEAAVVG 598

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
             RPHPVKGE LYCF+T   G  +NQ+L  +LK+QVREKIG  A PD IQ+AP LPKTRSGK
Sbjct:   599 RPHPVKGESLYCFVTLNDGINYNQKLEAELKKQVREKIGAIATPDYIQNAPGLPKTRSGK 658

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A N+R++GD STLAD  V++ LF+NR
Sbjct:   659 IMRRVLRKIACNERDLGDVSTLADSSVIEHLFENR 693

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

MGI|MGI:1890410 Acss2 "acyl-CoA synthetase short-chain family member 2" [Mus musculus (taxid:10090)]

 Score = 485 (175.8 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 96/155 (61%), Positives = 116/155 (74%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             RRD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  V+EAAVV 
Sbjct:   555 RRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAVAEAAVVG 601

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
              PHPVKGECLYCF+T   G TF+  L ++LK+Q+REKIGP A PD IQ+AP LPKTRSGK
Sbjct:   602 HPHPVKGECLYCFVTLCDGHTFSPTLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGK 661

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A ND ++GD ST+AD  V++ LF +R
Sbjct:   662 IMRRVLRKIAQNDHDLGDTSTVADPSVINHLFSHR 696

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=ISO;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019413 "acetate biosynthetic process" evidence=ISO

GO:0019542 "propionate biosynthetic process" evidence=ISO

RGD|1305489 Acss2 "acyl-CoA synthetase short-chain family member 2" [Rattus norvegicus (taxid:10116)]

 Score = 485 (175.8 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 96/155 (61%), Positives = 116/155 (74%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             RRD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  V+EAAVV 
Sbjct:   555 RRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAVAEAAVVG 601

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
              PHPVKGECLYCF+T   G TF+  L ++LK+Q+REKIGP A PD IQ+AP LPKTRSGK
Sbjct:   602 HPHPVKGECLYCFVTLCDGHTFSPTLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGK 661

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A ND ++GD ST+AD  V++ LF +R
Sbjct:   662 IMRRVLRKIAQNDHDLGDTSTVADPSVINHLFSHR 696

GO:0003987 "acetate-CoA ligase activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA;ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0019413 "acetate biosynthetic process" evidence=IDA

GO:0019542 "propionate biosynthetic process" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E7EWU3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 95/155 (61%), Positives = 116/155 (74%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             +RD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  V+EAAVV 
Sbjct:   505 QRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAVAEAAVVG 551

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
              PHPVKGECLYCF+T   G TF+ +L ++LK+Q+REKIGP A PD IQ+AP LPKTRSGK
Sbjct:   552 HPHPVKGECLYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGK 611

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A ND ++GD ST+AD  V+  LF +R
Sbjct:   612 IMRRVLRKIAQNDHDLGDMSTVADPSVISHLFSHR 646

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 482 (174.7 bits), Expect = 8.7e-46, P = 8.7e-46
 Identities = 95/155 (61%), Positives = 116/155 (74%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             +RD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  V+EAAVV 
Sbjct:   555 QRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAVAEAAVVG 601

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
              PHPVKGECLYCF+T   G TF+ +L ++LK+Q+REKIGP A PD IQ+AP LPKTRSGK
Sbjct:   602 HPHPVKGECLYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGK 661

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A ND ++GD ST+AD  V+  LF +R
Sbjct:   662 IMRRVLRKIAQNDHDLGDMSTVADPSVISHLFSHR 696

GO:0019427 "acetyl-CoA biosynthetic process from acetate" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IC;IDA

GO:0016208 "AMP binding" evidence=IC

GO:0003987 "acetate-CoA ligase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006069 "ethanol oxidation" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q5QPH3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 482 (174.7 bits), Expect = 1.1e-45, P = 1.1e-45
 Identities = 95/155 (61%), Positives = 116/155 (74%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             +RD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  V+EAAVV 
Sbjct:   568 QRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAVAEAAVVG 614

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
              PHPVKGECLYCF+T   G TF+ +L ++LK+Q+REKIGP A PD IQ+AP LPKTRSGK
Sbjct:   615 HPHPVKGECLYCFVTLCDGHTFSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGK 674

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A ND ++GD ST+AD  V+  LF +R
Sbjct:   675 IMRRVLRKIAQNDHDLGDMSTVADPSVISHLFSHR 709

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0019413 "acetate biosynthetic process" evidence=IEA

GO:0019542 "propionate biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 481 (174.4 bits), Expect = 1.1e-45, P = 1.1e-45
 Identities = 95/155 (61%), Positives = 116/155 (74%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             RRD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  ++EAAVV 
Sbjct:   555 RRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAIAEAAVVG 601

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
              PHPVKGECLYCF+T   G TF+  L ++LK+Q+REKIGP A PD IQ+AP LPKTRSGK
Sbjct:   602 HPHPVKGECLYCFVTLCDGYTFSPTLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGK 661

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A ND ++GD ST+AD  V+ +LF +R
Sbjct:   662 IMRRVLRKIAQNDHDLGDTSTVADPTVICQLFNHR 696

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E2R0C6 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 481 (174.4 bits), Expect = 1.4e-45, P = 1.4e-45
 Identities = 95/155 (61%), Positives = 116/155 (74%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             RRD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  ++EAAVV 
Sbjct:   568 RRDQDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHEAIAEAAVVG 614

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
              PHPVKGECLYCF+T   G TF+  L ++LK+Q+REKIGP A PD IQ+AP LPKTRSGK
Sbjct:   615 HPHPVKGECLYCFVTLCDGYTFSPTLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGK 674

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A ND ++GD ST+AD  V+ +LF +R
Sbjct:   675 IMRRVLRKIAQNDHDLGDTSTVADPTVICQLFNHR 709

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 476 (172.6 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 94/155 (60%), Positives = 115/155 (74%)

Query:    99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
             RRD+DGY W+TGR+DDMLNVSGHL+         STA    EVE+ L  H  ++EAAVV 
Sbjct:   555 RRDKDGYYWITGRIDDMLNVSGHLL---------STA----EVESALVEHQAIAEAAVVG 601

Query:   159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
              PHPVKGECLYCF+T   G  F+  L ++LK+Q+REKIGP A PD IQ+AP LPKTRSGK
Sbjct:   602 HPHPVKGECLYCFVTLRDGHIFSPTLTEELKKQIREKIGPIATPDFIQNAPGLPKTRSGK 661

Query:   219 IMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR 253
             IMRRVLRK+A ND ++GD ST+AD  V+ +LF +R
Sbjct:   662 IMRRVLRKIAQNDHDLGDTSTVADPSVITQLFSHR 696

GO:0006085 "acetyl-CoA biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003987 "acetate-CoA ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4YK73	ACSA_BRASO	6, ., 2, ., 1, ., 1	0.5320	0.5503	0.2184	yes	N/A
Q8YJ48	ACSA_BRUME	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
A0KNI2	ACSA_AERHH	6, ., 2, ., 1, ., 1	0.5125	0.5658	0.2253	yes	N/A
Q4UP35	ACSA_XANC8	6, ., 2, ., 1, ., 1	0.5384	0.5503	0.2194	yes	N/A
A1U2S9	ACSA_MARAV	6, ., 2, ., 1, ., 1	0.5506	0.5581	0.2218	yes	N/A
Q0VSR6	ACSA_ALCBS	6, ., 2, ., 1, ., 1	0.5189	0.5581	0.2232	yes	N/A
A4SJM6	ACSA_AERS4	6, ., 2, ., 1, ., 1	0.5062	0.5658	0.2253	yes	N/A
Q2NXE2	ACSA_XANOM	6, ., 2, ., 1, ., 1	0.5384	0.5503	0.2194	yes	N/A
Q57B76	ACSA_BRUAB	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
B5ZV36	ACSA_RHILW	6, ., 2, ., 1, ., 1	0.5379	0.5581	0.2211	yes	N/A
A7HSR8	ACSA_PARL1	6, ., 2, ., 1, ., 1	0.5448	0.5503	0.2194	yes	N/A
C0RF62	ACSA_BRUMB	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
Q92KX2	ACSA2_RHIME	6, ., 2, ., 1, ., 1	0.5443	0.5581	0.2218	yes	N/A
B3PS41	ACSA_RHIE6	6, ., 2, ., 1, ., 1	0.5379	0.5581	0.2211	yes	N/A
B1M0M1	ACSA_METRJ	6, ., 2, ., 1, ., 1	0.5316	0.5581	0.2222	yes	N/A
Q8P3L1	ACSA_XANCP	6, ., 2, ., 1, ., 1	0.5384	0.5503	0.2194	yes	N/A
Q2G512	ACSA_NOVAD	6, ., 2, ., 1, ., 1	0.5379	0.5581	0.2218	yes	N/A
Q9VP61	ACSA_DROME	6, ., 2, ., 1, ., 1	0.7133	0.5581	0.2149	yes	N/A
A7IFD4	ACSA_XANP2	6, ., 2, ., 1, ., 1	0.5320	0.5503	0.2181	yes	N/A
A6UED8	ACSA_SINMW	6, ., 2, ., 1, ., 1	0.5443	0.5581	0.2218	yes	N/A
Q2K2T1	ACSA_RHIEC	6, ., 2, ., 1, ., 1	0.5379	0.5581	0.2211	yes	N/A
Q8FYQ3	ACSA_BRUSU	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
A9WWT6	ACSA_BRUSI	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
Q9I558	ACSA1_PSEAE	6, ., 2, ., 1, ., 1	0.5189	0.5581	0.2211	yes	N/A
Q8UBV5	ACSA_AGRT5	6, ., 2, ., 1, ., 1	0.5379	0.5581	0.2211	yes	N/A
Q2YLH5	ACSA_BRUA2	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
Q9QXG4	ACSA_MOUSE	6, ., 2, ., 1, ., 1	0.6114	0.5581	0.2054	yes	N/A
B9JEV4	ACSA_AGRRK	6, ., 2, ., 1, ., 1	0.5316	0.5581	0.2208	yes	N/A
A9M849	ACSA_BRUC2	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
B1ZB59	ACSA_METPB	6, ., 2, ., 1, ., 1	0.5114	0.5930	0.2357	yes	N/A
Q6FYL4	ACSA_BARQU	6, ., 2, ., 1, ., 1	0.5189	0.5581	0.2208	yes	N/A
B2S7N5	ACSA_BRUA1	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
A5VSF3	ACSA_BRUO2	6, ., 2, ., 1, ., 1	0.5437	0.5581	0.2211	yes	N/A
Q21LV0	ACSA_SACD2	6, ., 2, ., 1, ., 1	0.5379	0.5581	0.2232	yes	N/A
C3MAS0	ACSA_RHISN	6, ., 2, ., 1, ., 1	0.5443	0.5581	0.2218	yes	N/A
A6WXV8	ACSA_OCHA4	6, ., 2, ., 1, ., 1	0.5312	0.5581	0.2211	yes	N/A
Q3IFM6	ACSA_PSEHT	6, ., 2, ., 1, ., 1	0.5384	0.5503	0.2198	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	258
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	9e-75
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-72
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	3e-68
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	4e-48
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	9e-45
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	1e-37
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	5e-36
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	9e-36
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	8e-33
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-30
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-29
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-28
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-28
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	7e-28
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	9e-27
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	2e-26
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-25
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	7e-25
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	8e-25
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-24
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-23
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-23
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	4e-23
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-22
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-20
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-20
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	7e-20
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	8e-20
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	9e-20
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-19
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	1e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-18
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-17
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-17
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-17
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	1e-16
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-16
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-16
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-16
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-16
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-16
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	1e-15
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-15
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	1e-15
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-15
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-15
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-15
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	5e-15
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	1e-14
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-14
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	4e-14
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	5e-14
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	8e-14
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-13
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-13
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-13
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-13
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	3e-13
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	6e-13
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-12
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-12
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-12
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-12
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	3e-12
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	3e-12
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-12
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	4e-12
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-12
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-11
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	2e-11
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-11
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-11
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	4e-11
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	6e-11
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	6e-11
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	7e-11
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	9e-11
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-10
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-10
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	2e-10
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	3e-10
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	3e-10
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	4e-10
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	4e-10
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	4e-10
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-10
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	5e-10
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	6e-10
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	6e-10
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	7e-10
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	7e-10
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-09
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-09
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-09
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-09
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-09
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	4e-09
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-09
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-08
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	3e-08
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	6e-08
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	7e-08
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	8e-08
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-07
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	1e-07
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-07
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	1e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-07
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-07
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-07
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	5e-07
PRK09188	365	PRK09188, PRK09188, serine/threonine protein kinas	5e-07
PLN03051	499	PLN03051, PLN03051, acyl-activating enzyme; Provis	5e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-07
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	7e-07
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	7e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-07
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	2e-06
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	3e-06
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	6e-06
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-05
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	4e-05
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	4e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-05
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-05
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	7e-05
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	8e-05
TIGR02372	386	TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase	1e-04
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-04
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	0.001
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.004

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score =  238 bits (611), Expect = 9e-75
 Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 13/159 (8%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
            ARRDEDGY W+TGRVDD+LNVSGH +          TA    E+E+ L +HP V+EAAV
Sbjct: 490 GARRDEDGYYWITGRVDDVLNVSGHRL---------GTA----EIESALVAHPKVAEAAV 536

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V RP  +KG+ +Y F+T  GG   + EL K+L+  VR++IGP A PDVIQ AP LPKTRS
Sbjct: 537 VGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRS 596

Query: 217 GKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255
           GKIMRR+LRK+A  +  +GD STLAD  VV++L + R  
Sbjct: 597 GKIMRRILRKIAEGEEILGDTSTLADPSVVEKLIEARQN 635

Length = 637

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score =  232 bits (594), Expect = 1e-72
 Identities = 81/145 (55%), Positives = 99/145 (68%), Gaps = 13/145 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+ GRVDD++NVSGH +          TA    EVE+ L SHP V+EAAVV
Sbjct: 471 ARRDEDGYYWILGRVDDVINVSGHRL---------GTA----EVESALVSHPAVAEAAVV 517

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            +P  VKGE +Y F+T   G   + EL K+LK+ VR++IGP A PD I   P LPKTRSG
Sbjct: 518 GKPDEVKGEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSG 577

Query: 218 KIMRRVLRKVAVNDREVGDKSTLAD 242
           KIMRR+LRK+A  + E+GD STL D
Sbjct: 578 KIMRRILRKIAAGEEELGDTSTLED 602

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score =  221 bits (565), Expect = 3e-68
 Identities = 81/156 (51%), Positives = 107/156 (68%), Gaps = 14/156 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD+DGY+W+TGRVDD++NVSGH +          TA    E+E+ L SHP V+EAAVV
Sbjct: 483 ARRDKDGYIWITGRVDDVINVSGHRL---------GTA----EIESALVSHPAVAEAAVV 529

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P  +KG+ +Y F+T   G   + EL K+L++ VR++IGP A PD I+  P LPKTRSG
Sbjct: 530 GIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSG 589

Query: 218 KIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQN 252
           KIMRR+LRK+A  + E +GD STL D  VV+EL + 
Sbjct: 590 KIMRRLLRKIAAGEEEILGDTSTLEDPSVVEELIEA 625

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score =  168 bits (426), Expect = 4e-48
 Identities = 82/152 (53%), Positives = 100/152 (65%), Gaps = 14/152 (9%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
            RD+DGY W+TGRVDD++NVSGH +          TA    EVE+ L SHP  +EAAVV 
Sbjct: 522 SRDKDGYYWLTGRVDDVINVSGHRI---------GTA----EVESALVSHPQCAEAAVVG 568

Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
             H VKG+ +Y F+T   G  +++EL K L   VR +IG FA PD I  AP LPKTRSGK
Sbjct: 569 IEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGK 628

Query: 219 IMRRVLRKVAVND-REVGDKSTLADEDVVDEL 249
           IMRR+LRK+A     E+GD STLAD  VVD+L
Sbjct: 629 IMRRILRKIASRQLDELGDTSTLADPGVVDQL 660

Length = 666

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  157 bits (399), Expect = 9e-45
 Identities = 59/142 (41%), Positives = 79/142 (55%), Gaps = 17/142 (11%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A RDEDGY W+ GR DD++ VSG  +                E+E+ L +HP V+EAAVV
Sbjct: 404 AERDEDGYFWLHGRSDDVIKVSGKRI---------GPL----EIESVLLAHPAVAEAAVV 450

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P P KG+ +  F+  A G   N EL +++++ V   IGP A+P  I+    LPKT SG
Sbjct: 451 GVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASG 509

Query: 218 KIMRRVLRKVAVNDREVGDKST 239
           KI RR+LRK+        D ST
Sbjct: 510 KIQRRLLRKILHKGE---DLST 528

Length = 528

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score =  137 bits (346), Expect = 1e-37
 Identities = 57/146 (39%), Positives = 79/146 (54%), Gaps = 16/146 (10%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A  DEDGY ++ GR DD + V+G  +     G          E+E+ L SHP V+EAA +
Sbjct: 343 ALVDEDGYWYILGRSDDTIKVAGKRV-----GP--------AEIESVLNSHPAVAEAAAI 389

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIG-PFAMPDVIQHAPRLPKTRS 216
             P PVKGE + CF+    G T +  L  +L   V + +G PF  P  +     LPKTR+
Sbjct: 390 GVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDALGKPFR-PREVHFVSDLPKTRN 448

Query: 217 GKIMRRVLRKVAVNDREVGDKSTLAD 242
           GKIMRRV+R   +  +  GD S+L +
Sbjct: 449 GKIMRRVIRAAYLG-QPPGDLSSLEN 473

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score =  134 bits (339), Expect = 5e-36
 Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 15/154 (9%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
           S  +DEDGYL+V GR DD++NV+GH +         ST     E+E  +  HPDV+E AV
Sbjct: 468 SGYKDEDGYLFVMGRTDDVINVAGHRL---------STG----EMEESVLKHPDVAECAV 514

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
           V     +KG+     +        + + L  ++   VRE+IGP A    +    RLPKTR
Sbjct: 515 VGVRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTR 574

Query: 216 SGKIMRRVLRKVAVNDREVGDKSTLADEDVVDEL 249
           SGKI+RR LRK+A +  +  D ST+ D  V+DE+
Sbjct: 575 SGKILRRTLRKIA-DGEDYKDPSTIEDPSVLDEI 607

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  133 bits (336), Expect = 9e-36
 Identities = 60/150 (40%), Positives = 85/150 (56%), Gaps = 22/150 (14%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
           SA  DEDGY W  GRVDD++  SG  +     G +        EVE+ L  HP V+EA V
Sbjct: 439 SAYMDEDGYFWFQGRVDDVIKTSGERV-----GPF--------EVESKLMEHPAVAEAGV 485

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + +P PV+GE +  F+    G   ++EL ++++  V++ +G  A P  I+   +LPKTRS
Sbjct: 486 IGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRS 545

Query: 217 GKIMRRVLRKVAVNDREV----GDKSTLAD 242
           GKIMRRVL+       E+    GD ST+ D
Sbjct: 546 GKIMRRVLKA-----WELGLPEGDLSTMED 570

Length = 570

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  123 bits (311), Expect = 8e-33
 Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 13/129 (10%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A +DEDGY W  GR DD++  SG     Y  G +        EVE+ L  HP V+EAAVV
Sbjct: 315 AIKDEDGYFWFVGRADDVIKSSG-----YRIGPF--------EVESALIEHPAVAEAAVV 361

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P PV+GE +  F+  A G   ++EL K+L++ V+++  P+  P  I+    LPKT SG
Sbjct: 362 GSPDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSG 421

Query: 218 KIMRRVLRK 226
           KI R  LR 
Sbjct: 422 KIRRVELRA 430

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  115 bits (291), Expect = 2e-30
 Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 18/124 (14%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              DE+GYL++TGR  D++ V G                V+  EVE+ L  HP V+EAAV
Sbjct: 232 GYLDEEGYLYITGRSKDLIKVGGE--------------NVYPAEVESVLLQHPAVAEAAV 277

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V  P   +GE +  F+    GA     L ++LK  +RE++ P+ +P VI+    LPKT S
Sbjct: 278 VGVPDEDRGERIVAFVVLRPGAD---ALAEELKAHLRERLAPYKVPRVIEFVDELPKTAS 334

Query: 217 GKIM 220
           GKI 
Sbjct: 335 GKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  113 bits (284), Expect = 5e-29
 Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 13/130 (10%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
             RRD DGYLW  GR DD++  SG     Y  G          E+E CL  HP V EAAV
Sbjct: 323 LGRRDADGYLWFKGRADDVIKSSG-----YRIGP--------AEIEECLLKHPAVLEAAV 369

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V  P P +GE +  F+  A G   + EL  +L++ V+ ++     P  I+    LP T +
Sbjct: 370 VGVPDPERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTT 429

Query: 217 GKIMRRVLRK 226
           GKI RR LR+
Sbjct: 430 GKIRRRELRR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score =  113 bits (286), Expect = 1e-28
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 21/149 (14%)

Query: 100 RDEDGYLWVTGRVDDMLNVSGH-LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
           RD DGY ++ GR DD++NV+GH L T               E+E  ++SHP V+E AVV 
Sbjct: 483 RDADGYYFILGRTDDVINVAGHRLGT--------------REIEESISSHPAVAEVAVVG 528

Query: 159 RPHPVKGECLYCFITPAGGATFN-----QELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
               +KG+    F+ P    +         L K++   V  ++G  A P  +     LPK
Sbjct: 529 VKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPK 588

Query: 214 TRSGKIMRRVLRKVAVNDREVGDKSTLAD 242
           TRSGK++RR ++ +A   R+ GD +T+ D
Sbjct: 589 TRSGKLLRRAIQAIA-EGRDPGDLTTIED 616

Length = 629

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score =  112 bits (281), Expect = 1e-28
 Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 13/129 (10%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
            A RDEDGY W  GR DD++  +GHL+  +             EVE+ L  HP V+EA V
Sbjct: 327 LAYRDEDGYFWFVGRADDVIKTAGHLVGPF-------------EVESALMEHPAVAEAGV 373

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + +P PV GE +  F++   G   ++EL ++L    R+++G    P  I     LPKTRS
Sbjct: 374 IGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRS 433

Query: 217 GKIMRRVLR 225
           GKIMRR+L+
Sbjct: 434 GKIMRRLLK 442

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  111 bits (278), Expect = 7e-28
 Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 16/130 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
              DEDGYL++ GR+ D++   G                ++  E+EA LA HP V+EAAV
Sbjct: 409 GYVDEDGYLYIVGRLKDLIISGGE--------------NIYPEEIEAVLAEHPAVAEAAV 454

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V  P    GE +   +    G    +   ++L+  +R+++  + +P ++     LP+T S
Sbjct: 455 VGVPDERWGERVVAVVVLKPGGDA-ELTAEELRAFLRKRLALYKVPRIVVFVDELPRTAS 513

Query: 217 GKIMRRVLRK 226
           GKI RR LR+
Sbjct: 514 GKIDRRALRE 523

Length = 534

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  107 bits (270), Expect = 9e-27
 Identities = 51/127 (40%), Positives = 61/127 (48%), Gaps = 13/127 (10%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
            RDEDGY W  GR DDML VSG  + V  F           EVE  L  HP V EAAVV 
Sbjct: 393 YRDEDGYYWYCGRSDDMLKVSG--IWVSPF-----------EVEDALLQHPAVLEAAVVG 439

Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
                       F+    G   + EL  +LK  V++K+ P+  P  I+    LPKT +GK
Sbjct: 440 AEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGK 499

Query: 219 IMRRVLR 225
           I R  LR
Sbjct: 500 IQRFKLR 506

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  105 bits (265), Expect = 2e-26
 Identities = 51/131 (38%), Positives = 66/131 (50%), Gaps = 13/131 (9%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A RDEDGYLW  GR DD+   S      Y    +        EVE+ L  HP V+EAAVV
Sbjct: 316 AYRDEDGYLWFVGRADDVFKSSD-----YRISPF--------EVESALLEHPAVAEAAVV 362

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P P++      +I    G   ++EL  +L   VRE++ P+     I+    LPKT SG
Sbjct: 363 PSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGELPKTISG 422

Query: 218 KIMRRVLRKVA 228
           KI R  LRK+ 
Sbjct: 423 KIRRVELRKIE 433

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score =  103 bits (259), Expect = 2e-25
 Identities = 50/126 (39%), Positives = 67/126 (53%), Gaps = 14/126 (11%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A  DEDGYLW  GR DD++  SG     Y  G +        EVE+ L  HP V E AV 
Sbjct: 420 AWMDEDGYLWFVGRADDLIKSSG-----YRIGPF--------EVESALIQHPAVLECAVT 466

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P P++G+ +   I    G   ++EL K+L+  V++   P+  P +I+    LPKT SG
Sbjct: 467 GVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEFVDELPKTISG 526

Query: 218 KIMRRV 223
           KI RRV
Sbjct: 527 KI-RRV 531

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  101 bits (254), Expect = 7e-25
 Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 13/129 (10%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
             RDEDGY W  GR DD++  +G     Y  G +        +VE+ L  HP V+EAAVV
Sbjct: 325 VERDEDGYFWFIGRADDVIISAG-----YRIGPF--------DVESALLEHPAVAEAAVV 371

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P P++GE +  F+    G   + EL ++L+  V++++   A P  ++  P LPKT SG
Sbjct: 372 GVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSG 431

Query: 218 KIMRRVLRK 226
           KI R +LR+
Sbjct: 432 KIQRFLLRQ 440

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  100 bits (251), Expect = 8e-25
 Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 16/128 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
              DEDGYL + GR+ DM+   G          Y        E+E  L +HP V+EAAVV
Sbjct: 236 GYMDEDGYLRIVGRIKDMIIRGG-------ENIYP------AEIEEALLTHPAVAEAAVV 282

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P    GE +  F+    GAT  +E   +L    R ++  F +P  ++    LP+T SG
Sbjct: 283 GVPDERLGEVVAAFVVLKPGATLTEE---ELIAFCRGRLARFKVPRYVRFVDELPRTASG 339

Query: 218 KIMRRVLR 225
           KI +  LR
Sbjct: 340 KIQKFKLR 347

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  101 bits (254), Expect = 1e-24
 Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 15/131 (11%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
              DEDGY W  GR DD++N SG     Y  G +        EVE+ L  HP V E+AVV
Sbjct: 410 GIMDEDGYFWFVGRADDVINSSG-----YRIGPF--------EVESALIEHPAVVESAVV 456

Query: 158 SRPHPVKGECLYCFI--TPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
           S P P++GE +  F+   P   +   ++L K+L++ V+    P+  P  ++    LPKT 
Sbjct: 457 SSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTI 516

Query: 216 SGKIMRRVLRK 226
           +GKI R  LR 
Sbjct: 517 TGKIKRNELRD 527

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 98.7 bits (247), Expect = 1e-23
 Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 18/129 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              DEDGY ++  R  DM+ V G                V+  E+E  L SHP V EAAV
Sbjct: 357 GYMDEDGYFYIVDRKKDMIIVGGF--------------NVYPREIEEVLYSHPAVLEAAV 402

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V  P P +GE +  F+    GA+  +E   +L    RE++  + +P  ++    LPK+  
Sbjct: 403 VGVPDPYRGEAVKAFVVLKEGASLTEE---ELIAFCRERLAAYKVPRQVEFRDELPKSAV 459

Query: 217 GKIMRRVLR 225
           GKI+RR LR
Sbjct: 460 GKILRRELR 468

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 96.4 bits (241), Expect = 3e-23
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 18/129 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              DEDGYL++  R  DM+ +SG        G       ++  EVE  L +HP V++ AV
Sbjct: 231 GYLDEDGYLYIVDRKKDMI-ISG--------GE-----NIYPAEVENVLLAHPAVADVAV 276

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           +  P    GE +   +    GAT      ++L    RE++  + +P  ++    LP+  S
Sbjct: 277 IGVPDEEWGEAVVAVVVLRPGAT---LDAEELIAFCRERLAGYKVPKSVEFVDELPRNAS 333

Query: 217 GKIMRRVLR 225
           GKI++R LR
Sbjct: 334 GKILKRELR 342

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 97.7 bits (243), Expect = 4e-23
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 19/157 (12%)

Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR 159
           RDEDGY ++ GR DD++NV+GH +                E+E  ++SHP V+E AVV  
Sbjct: 482 RDEDGYTFILGRTDDVINVAGHRLGT-------------REIEESVSSHPSVAEVAVVGV 528

Query: 160 PHPVKGECLYCFITP-----AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
              +KG+    F        AG A     +   +   V  ++G  A P  +     LPKT
Sbjct: 529 HDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKT 588

Query: 215 RSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQ 251
           RSGK++RR ++ +A   R+ GD +T+ D   ++++ +
Sbjct: 589 RSGKLLRRSIQALA-EGRDPGDLTTIDDPGALEQVRR 624

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 18/129 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKV-FTEVEACLASHPDVSEAAV 156
            R DE+GYL+  GR DDM+   G+              +V  TE+E  + +HP V+EAAV
Sbjct: 239 VRMDEEGYLYFVGRKDDMIKTRGY--------------RVSPTEIEEVICAHPLVAEAAV 284

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           +  P P+ G+ +   +  A G        K+L +  R+ +  + +P  I     LPK  +
Sbjct: 285 IGVPDPLLGQAIVAVVVSADG---ESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNAN 341

Query: 217 GKIMRRVLR 225
           GK+ R  LR
Sbjct: 342 GKVDRSALR 350

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
              DE+GY+ V  R  DM+   G                V + EVE  L +HP V+E AV
Sbjct: 403 GVMDEEGYITVVDRKKDMIKTGGEN--------------VASREVEEALYTHPAVAEVAV 448

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           +  P P   E +   + P  GAT  ++   +L    R ++  F +P  +     LP+  S
Sbjct: 449 IGLPDPKWIEAVTAVVVPKAGATVTED---ELIAHCRARLAGFKVPKRVIFVDELPRNPS 505

Query: 217 GKIMRRVLRK 226
           GKI++R LR+
Sbjct: 506 GKILKRELRE 515

Length = 523

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 13/128 (10%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
             RD DG+    GR DDM+ VSG          + S      EVEA L  HP V+EAAVV
Sbjct: 322 FSRDADGWYRYQGRADDMIKVSG---------QWVSP----LEVEAALGEHPAVAEAAVV 368

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           + P       L  F+ P  G    Q L + L + +RE++ P+  P  I+    LP+T +G
Sbjct: 369 AVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATG 428

Query: 218 KIMRRVLR 225
           K+ R  LR
Sbjct: 429 KLQRFRLR 436

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 87.8 bits (218), Expect = 7e-20
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              DE+GY +   RV  M+NVSG+              KV+  EVEA L  HP V E  V
Sbjct: 318 GYIDEEGYFFFLDRVKRMINVSGY--------------KVWPAEVEALLYQHPAVLEVCV 363

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + RP P +GE +  F+             + + +  RE++  +  P +I+    LPKT S
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPDYRGKVT-EEDIIEWCRERMAAYKYPRIIEFVDELPKTAS 422

Query: 217 GKIMRRVL 224
           GK++ R+L
Sbjct: 423 GKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 87.9 bits (219), Expect = 8e-20
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
              DEDGYL++T R+ D++   G    +Y             E+E  L  HP V+E AV+
Sbjct: 403 GYIDEDGYLYITDRIKDVIISGG--ENIY-------PR----ELEDALYGHPAVAEVAVI 449

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P    GE     +    GAT +    K+L+  +R ++  F +P  I     LP+T  G
Sbjct: 450 GVPDEKWGERPVAVVVLKPGATLDA---KELRAFLRGRLAKFKLPKRIAFVDELPRTSVG 506

Query: 218 KIMRRVLR 225
           KI++RVLR
Sbjct: 507 KILKRVLR 514

Length = 521

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 86.5 bits (215), Expect = 9e-20
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              DEDGYL++TGR+ +++N  G               K+   EVE  L  HP V+EA V
Sbjct: 233 GYLDEDGYLFLTGRIKELINRGGE--------------KISPREVEEVLLRHPAVAEAVV 278

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
              P  + GE +   +     +    E   +L+   R+++  F +P  I     LPK  +
Sbjct: 279 FGVPDELYGEEVAAAVVLRADSKVTIE---ELRDFARKRLAAFKVPKKILFVDALPKGAT 335

Query: 217 GKIMRRVLRK 226
           GKI RR L +
Sbjct: 336 GKIQRRKLAE 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 16/129 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            R DE+GYL++  R  DM  V G       F  Y +      EVE  L  HP V+EAAV+
Sbjct: 400 GRLDEEGYLYIVDRKKDMFIVGG-------FNVYPA------EVEEVLYEHPAVAEAAVI 446

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P    GE    ++    GA   +E   +L    RE +  + +P  I+    LPK  +G
Sbjct: 447 GVPDERLGEVGKAYVVLKPGAELTEE---ELIAYCREHLAKYKVPRSIEFLDELPKNATG 503

Query: 218 KIMRRVLRK 226
           K+++R LR+
Sbjct: 504 KVLKRALRE 512

Length = 513

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 13/127 (10%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
           R+DEDGY     R DDM+  +G+ +                EVE  L +HPDV+E AV+ 
Sbjct: 374 RQDEDGYFHYVARSDDMIVSAGYNIAA-------------PEVEDALLTHPDVAECAVIG 420

Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
            P   +G+ +   I    G    + L ++L+  V+  I P+  P  I     LPKT++GK
Sbjct: 421 VPDEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGK 480

Query: 219 IMRRVLR 225
           I R  LR
Sbjct: 481 IQRFRLR 487

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 25/152 (16%)

Query: 78  LHGHNNFSFTTNN----SDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCS 133
              HN  +FT +      DL     R D DGY  V GR+ D +N  G  ++         
Sbjct: 352 APEHNARAFTDDGFYRTGDL----VRIDADGYYRVVGRIKDQINRGGEKISP-------- 399

Query: 134 TAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVR 193
                 E+E  L SHP V++AAVV  P  V GE +  F+ P GGA      + +L+  +R
Sbjct: 400 -----EEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPT---LAELRAFLR 451

Query: 194 EK-IGPFAMPDVIQHAPRLPKTRSGKIMRRVL 224
           E+ +  F +PD ++    LP T  GK+ ++ L
Sbjct: 452 EQGLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
              DEDGY  + GR  D +  SG    V         A    E+E  L  HP V+E AV+
Sbjct: 322 GVVDEDGYYRILGRKSDDIIKSGGY-KVS--------AL---EIEEALLEHPGVAEVAVI 369

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P P  GE +   + P  GA         L+   REK+ P+ +P  +     LP+   G
Sbjct: 370 GVPDPDWGEAVVAVVVPEAGAALTLAE---LRAWAREKLAPYKIPKRVIVVDELPRNAMG 426

Query: 218 KIMR 221
           K+ +
Sbjct: 427 KVQK 430

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 19/127 (14%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAVVSR 159
           D +GYL+V GR DD++ +SG        G       ++  E+EA L  HP V EAAVV  
Sbjct: 299 DAEGYLYVLGRRDDLI-ISG--------GE-----NIYPEEIEAVLLQHPAVEEAAVVGV 344

Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
           P    G+    F+ P          V++L+  + +K+  +  P      P LP+  SGKI
Sbjct: 345 PDDEWGQRPVAFVVPNDDPVS----VEELQAFLADKLAKYKRPKRWYPLPELPRNASGKI 400

Query: 220 MRRVLRK 226
            R  LR+
Sbjct: 401 DRAALRQ 407

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 79.9 bits (198), Expect = 3e-17
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 26/134 (19%)

Query: 97  SARRDEDGYLWVTGRVDDML-----NVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDV 151
             RRDEDG+L+   R  D +     N+S          SY        EVEA + +HP V
Sbjct: 309 RGRRDEDGFLYFVDRKKDAIRRRGENIS----------SY--------EVEAAILAHPAV 350

Query: 152 SEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL 211
           +EAAVV+ P  +  + +   +    G T + E    L +  R+++  F +P  I+    L
Sbjct: 351 AEAAVVAVPSELGEDEVKAVVVLRPGETLDPE---ALLEFCRDRLPYFMVPRYIEFVDEL 407

Query: 212 PKTRSGKIMRRVLR 225
           PKT + KI +  LR
Sbjct: 408 PKTPTEKIQKAELR 421

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 18/126 (14%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAVVSR 159
           DE+G L+V GR D+M+ VSG                V+  EVE  LA+HPDV+EAAV+  
Sbjct: 427 DENGRLFVVGRDDEMI-VSG-------------GENVYPIEVEKTLATHPDVAEAAVIGV 472

Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
                G+ L  F+    GA       + LKQ VR+ +  + +P  I     LP+  +GKI
Sbjct: 473 DDEQYGQRLAAFVVLKPGA---SATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKI 529

Query: 220 MRRVLR 225
           +RR L+
Sbjct: 530 LRRELQ 535

Length = 537

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 17/130 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            R D DGYL +TGR  D++   G  ++               E+E  L  HP V+E AVV
Sbjct: 324 GRLDADGYLRITGRKKDIIIRGGENISA-------------REIEDLLLRHPAVAEVAVV 370

Query: 158 SRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + P    GE +   + PA GA+    EL + L  Q    +     P+ ++    LP+T S
Sbjct: 371 AMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQ---GLAKQKWPERLEVVDALPRTPS 427

Query: 217 GKIMRRVLRK 226
           GK+ +  LR+
Sbjct: 428 GKVQKFELRE 437

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 78.0 bits (192), Expect = 2e-16
 Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 13/127 (10%)

Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR 159
           R++DG     GR DDML VSG  ++ +             E+E+ L  HP V EAAVV  
Sbjct: 394 RNDDGSYTYAGRTDDMLKVSGIYVSPF-------------EIESALIQHPAVLEAAVVGV 440

Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
                      FI    G   +  L  +LK+ V++++ P+  P  I     LPKT +GKI
Sbjct: 441 EDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKI 500

Query: 220 MRRVLRK 226
            R  LR+
Sbjct: 501 QRFKLRE 507

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)

Query: 81  HNNFSFT--TNNS-----DLLLSSARR---DEDGYLWVTGRVDDMLNVSGHLMTVYFFGS 130
            N F F   T+       D LLSS      DEDG L+V GR DDM+ VSG        G 
Sbjct: 408 GNGFPFEGYTDGRDKQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI-VSG--------GE 458

Query: 131 YCSTAKVF-TEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLK 189
                 VF  EVE  LA HPDV EAAV+       G+ L  F+  A GA  +++    +K
Sbjct: 459 -----NVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDED---AIK 510

Query: 190 QQVREKIGPFAMP-DVIQHAPRLPKTRSGKIMRRVLRK 226
             VR+ +  + +P DV+     LP+  +GK+++R LR+
Sbjct: 511 DYVRDNLARYKVPRDVV-FLDELPRNPTGKVLKRELRE 547

Length = 549

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 77.5 bits (191), Expect = 3e-16
 Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 16/136 (11%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRD DG+ WV  R  DM    G    VY             E+EA LA HP + E AVV
Sbjct: 369 ARRDADGFFWVVDRKKDMFISGGE--NVYP-----------AEIEAVLADHPGIRECAVV 415

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
                  GE  Y  I PA GA  + E +   +  +  ++  + +P  ++    LP+T SG
Sbjct: 416 GMADAQWGEVGYLAIVPADGAPLDLERI---RSHLSTRLAKYKVPKHLRLVDALPRTASG 472

Query: 218 KIMRRVLRKVAVNDRE 233
           K+ +  LR      R+
Sbjct: 473 KLQKARLRDALAAGRK 488

Length = 488

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 16/128 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           AR DEDG+ ++  R  DM+ V+G       F  +        EVE  LA HP V++ AV+
Sbjct: 401 AREDEDGFYYIVDRKKDMI-VTGG------FNVFPR------EVEDVLAEHPAVAQVAVI 447

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P    GE +   +    GA  +     +L+  V+E+ G    P  +     LP T  G
Sbjct: 448 GVPDEKWGEAVTAVVVLRPGAAVDAA---ELQAHVKERKGSVHAPKQVDFVDSLPLTALG 504

Query: 218 KIMRRVLR 225
           K  ++ LR
Sbjct: 505 KPDKKALR 512

Length = 524

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 75.6 bits (187), Expect = 1e-15
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 22/130 (16%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGH---LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEA 154
           AR   DG L   GR DD + + G+   L                 E+EA L +HP V EA
Sbjct: 335 ARWLPDGNLEFLGRADDQVKIRGYRIELG----------------EIEAALLAHPGVREA 378

Query: 155 AVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
            VV+R      + L  ++ PA GA  +     +L+  + E++  + +P        LP T
Sbjct: 379 VVVAREDGAGEKRLVAYVVPAAGAELD---AAELRAFLAERLPDYMVPSAFVVLDALPLT 435

Query: 215 RSGKIMRRVL 224
            +GK+ R+ L
Sbjct: 436 PNGKVDRKAL 445

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DEDGYL++T R  DM+ +SG +  +Y             E+E  L +HP V++ AV   P
Sbjct: 380 DEDGYLYLTDRKSDMI-ISGGV-NIYP-----------QEIENLLVTHPKVADVAVFGVP 426

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               GE +   + PA GA     L  +L   +R ++  +  P  I     LP+T +GK+ 
Sbjct: 427 DEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLY 486

Query: 221 RRVLR 225
           +R LR
Sbjct: 487 KRRLR 491

Length = 502

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 25/156 (16%)

Query: 81  HNNFSFTT----NNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK 136
           HN   +      N  DL     R D DGY W+TGR  D++   GH +             
Sbjct: 436 HNKGLWLEDGWLNTGDL----GRIDADGYFWLTGRAKDLIIRGGHNIDP----------- 480

Query: 137 VFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREK 195
               +E  L  HP V+ AA V RP    GE    ++    GA+    EL+   +  + E 
Sbjct: 481 --AAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAE- 537

Query: 196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231
               A+P  ++    LPKT  GKI +  LR+ A+  
Sbjct: 538 --RAAVPKHVRILDALPKTAVGKIFKPALRRDAIRR 571

Length = 632

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 24/150 (16%)

Query: 81  HNNFSFTTN----NSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK 136
           HN  +F  +    + DL+    RRD DGYL V GRV D +N  G  +             
Sbjct: 405 HNARAFDADGFYRSGDLV----RRDPDGYLVVEGRVKDQINRGGEKIAA----------- 449

Query: 137 VFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKI 196
              EVE  L  HP V +AA+V+ P  + GE    FI          +L + L+++    +
Sbjct: 450 --EEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRER---GL 504

Query: 197 GPFAMPDVIQHAPRLPKTRSGKIMRRVLRK 226
             F +PD I+    LP T  GKI ++ LR+
Sbjct: 505 AAFKLPDRIEFVDSLPLTAVGKIDKKALRR 534

Length = 542

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 22/131 (16%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
            R DE+GY ++T R+  M+N SG               KV+  EVE  L  HP + EA V
Sbjct: 424 GRMDEEGYFFITDRLKRMINASGF--------------KVWPAEVENLLYKHPAIQEACV 469

Query: 157 VSRPHPVKGECLYCFITP---AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
           ++ P P +GE +   +     A G T  +E++       RE +  +  P +++    LPK
Sbjct: 470 IATPDPRRGETVKAVVVLRPEARGKTTEEEII----AWAREHMAAYKYPRIVEFVDSLPK 525

Query: 214 TRSGKIMRRVL 224
           + SGKI+ R L
Sbjct: 526 SGSGKILWRQL 536

Length = 546

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 21/145 (14%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS--YCSTAKVFTEVEACLASHPDVSEAAV 156
           R+DE+GY+WV  R  DM+ +SG        G   YC+      EVE  LASHPD+ E AV
Sbjct: 408 RQDEEGYVWVVDRKKDMI-ISG--------GENIYCA------EVENVLASHPDIVEVAV 452

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + R     GE                  ++ L + + +++  +  P  ++    LP+  +
Sbjct: 453 IGRADEKWGEVPVAVAAVRNDD--AALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPA 510

Query: 217 GKIMRRVLRKV--AVNDREVGDKST 239
           GK+++  LR+   A  + E    S 
Sbjct: 511 GKVLKTELRERYGACVNVERRSASA 535

Length = 542

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 16/129 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A  DEDGY+ +T R  D++  SG        G + S+     E+E  L +HP V+EAAVV
Sbjct: 405 AVIDEDGYIQITDRAKDVIK-SG--------GEWISS----VELENALMAHPAVAEAAVV 451

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH   GE     +    GA   +E   +L + + +K+  + +PD +     +PKT  G
Sbjct: 452 GVPHEKWGERPLAVVVLKPGAKVTEE---ELLEHLAKKVAKWWLPDRVVFVDEIPKTSVG 508

Query: 218 KIMRRVLRK 226
           K  ++ LR+
Sbjct: 509 KFDKKALRE 517

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 65.9 bits (162), Expect = 1e-14
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLAD 242
           +A+P  ++    LPKTRSGKI+RR+LR +A    ++GD STL D
Sbjct: 1   YAVPREVEFVDELPKTRSGKILRRLLRAIA-LGEDLGDLSTLED 43

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 16/124 (12%)

Query: 102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPH 161
           EDGY+ +  R  DM+ VSG       F  Y +      E+E  LA+ P V + A +  P 
Sbjct: 445 EDGYMRIVDRKKDMILVSG-------FNVYPN------ELEDVLAALPGVLQCAAIGVPD 491

Query: 162 PVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMR 221
              GE +  F+    G T  +E   Q+ + +R  +  + +P  ++    LP T  GKI+R
Sbjct: 492 EKSGEAIKVFVVVKPGETLTKE---QVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILR 548

Query: 222 RVLR 225
           R LR
Sbjct: 549 RELR 552

Length = 562

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 71.3 bits (175), Expect = 4e-14
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 22/131 (16%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE-VEACLASHPDVSEAAVVSR 159
           DE+G++++ GR  +M+ + G +              +F E +E+ L  HP V E  V+  
Sbjct: 372 DEEGFIYIVGREKNMI-LFGGI-------------NIFPEEIESVLHEHPAVDEIVVIGV 417

Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
           P    GE     I   G AT      +QLK    +++  F +P        +P T SGKI
Sbjct: 418 PDSYWGEKPVAIIK--GSAT-----KQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKI 470

Query: 220 MRRVLRKVAVN 230
            R   +    N
Sbjct: 471 ARMEAKSWIEN 481

Length = 487

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 20/127 (15%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAVVSR 159
           DE+G+L+V  R  D++   G                ++  E+E  L SHP V+EA VV  
Sbjct: 371 DEEGFLYVLDRRSDLIISGGE--------------NIYPAEIEEVLLSHPGVAEAGVVGV 416

Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
           P    G+    F+  +G  T  +     L+    EK+  + +P        LP+  SGK+
Sbjct: 417 PDDKWGQVPVAFVVKSGEVTEEE-----LRHFCEEKLAKYKVPKRFYFVEELPRNASGKL 471

Query: 220 MRRVLRK 226
           +R  L++
Sbjct: 472 LRHELKQ 478

Length = 483

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 70.2 bits (172), Expect = 8e-14
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
           RRDE+G+L+  GR D+M+  SG+ ++              TEVE    +   V+EA    
Sbjct: 405 RRDEEGFLYFVGRRDEMIKTSGYRVSP-------------TEVEEVAYATGLVAEAVAFG 451

Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
            P P  G+ +   +TP GG   ++     L  + R ++  + +P +I     LP+  +GK
Sbjct: 452 VPDPTLGQAIVLVVTPPGGEELDR---AALLAECRARLPNYMVPALIHVRQALPRNANGK 508

Query: 219 IMRRVLRK 226
           I R+ L K
Sbjct: 509 IDRKALAK 516

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 17/119 (14%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE G+L   GR  +ML V+G  M+V+            +EVEA L  HP V  +AVV RP
Sbjct: 453 DEQGFLHYLGRRKEMLKVNG--MSVFP-----------SEVEALLGQHPAVLGSAVVGRP 499

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
            P KG+    F+    GA         L+   RE +  + +P  I+    LP T +GK+
Sbjct: 500 DPDKGQVPVAFVQLKPGADLTAA---ALQAWCRENMAVYKVP-EIRIVDALPMTATGKV 554

Length = 567

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE+G+L +  R  DM+ VSG       F  Y        E+E  +  HP V E A V  P
Sbjct: 443 DEEGFLRIVDRKKDMILVSG-------FNVYP------NEIEDVVMLHPKVLEVAAVGVP 489

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
             V GE +  F+     +   +EL+       R  +  + +P +++    LPK+  GKI+
Sbjct: 490 SEVSGEAVKIFVVKKDPSLTEEELIT----HCRRHLTGYKVPKLVEFRDELPKSNVGKIL 545

Query: 221 RRVLR 225
           RR LR
Sbjct: 546 RRELR 550

Length = 560

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 49/158 (31%), Positives = 63/158 (39%), Gaps = 33/158 (20%)

Query: 81  HNNFSFTT----NNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH----LMTVYFFGSYC 132
           HN  +       N  DL     R D DGYLW+TGR  D++   GH     M         
Sbjct: 225 HNAGARLEDGWLNTGDL----GRIDADGYLWLTGRAKDLIIRGGHNIDPQM--------- 271

Query: 133 STAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV 192
                   +E  L  HP V+ AA V RP    GE    ++    GAT  +    +L   V
Sbjct: 272 --------IEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEG---ELLAFV 320

Query: 193 REKIG-PFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAV 229
           + +I    A+P  I     LP T  GKI +  LR  A 
Sbjct: 321 KARIPERAAVPKAIYIIDALPLTAVGKIFKPRLRCDAA 358

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 69.1 bits (169), Expect = 2e-13
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 16/127 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           AR DEDG++++ GR  +M+   G    +Y             EVE  +    DV E AVV
Sbjct: 379 ARVDEDGFVYIVGRKKEMIISGGE--NIYPL-----------EVEQVINKLSDVYEVAVV 425

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            R H   GE    FI     +   ++    + +  R  +  + +P  I     LPK  +G
Sbjct: 426 GRQHVKWGEIPIAFIVKKSSSVLIEK---DVIEHCRLFLAKYKIPKEIVFLKELPKNATG 482

Query: 218 KIMRRVL 224
           KI +  L
Sbjct: 483 KIQKAQL 489

Length = 496

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 20/162 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
               E G + + GR D  LN  G  +     G    TA+++ +VEA     P+V ++ V+
Sbjct: 506 IEITEHGGVVIYGRSDATLNRGGVRI-----G----TAEIYRQVEAL----PEVLDSLVI 552

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            +  P     +  F+  A G T +  L  +++  +R  + P  +PD I   P +P+T SG
Sbjct: 553 GQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSG 612

Query: 218 KIM----RRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255
           K +    +++L    V      ++  LA+ + +D  F +  E
Sbjct: 613 KKVELPVKKLLHGRPVKK--AVNRDALANPEALDW-FADLAE 651

Length = 655

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 67.6 bits (165), Expect = 6e-13
 Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 18/123 (14%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE-VEACLASHPDVSEAAVVSR 159
              G L + GR+ +++N  G               K+  E VE  LASHP+V EAAV   
Sbjct: 419 SAAGDLSIRGRIKELINRGGE--------------KISPERVEGVLASHPNVMEAAVFGV 464

Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
           P  + GE +   I P   A    E   +L Q  RE++  F +P   Q A  LP T  G +
Sbjct: 465 PDQLYGEAVAAVIVPRESAPPTAE---ELVQFCRERLAAFEIPASFQEASGLPHTAKGSL 521

Query: 220 MRR 222
            RR
Sbjct: 522 DRR 524

Length = 534

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
           EVE  L  HP V EAAVV+RP    GE    F+    GA+  +E   +L +  REK+  F
Sbjct: 438 EVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEE---ELIEYCREKLAHF 494

Query: 200 AMPDVIQHAPRLPKTRSGKIMRRVLRK 226
            +P  ++    LPKT +GKI + VLR+
Sbjct: 495 KVPKTVEFVE-LPKTATGKIQKFVLRE 520

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 16/124 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DEDG+ +V  R  DM+  SG       F  Y        EVE  L  H  V E   +  P
Sbjct: 442 DEDGFFYVKDRKKDMIVASG-------FNVYPR------EVEEVLYEHEKVQEVVTIGVP 488

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
            P +GE +  F+    G   ++E   +L Q  R+ +  + +P V +    LPKT  GKI+
Sbjct: 489 DPYRGETVKAFVVLKEGTECSEE---ELNQFARKYLAAYKVPKVYEFRDELPKTTVGKIL 545

Query: 221 RRVL 224
           RRVL
Sbjct: 546 RRVL 549

Length = 563

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 18/135 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSG-HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
           A RD DGY +  GR+ D + V G +L T                +E  L  +PD +E AV
Sbjct: 389 AYRDADGYAYFAGRLGDWMRVDGENLGT--------------APIERILLRYPDATEVAV 434

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
            + P PV G+ +   +  A GA F+ +   + L  Q    +GP   P  ++    LP+T 
Sbjct: 435 YAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQ--PDLGPKQWPSYVRVCAELPRTA 492

Query: 216 SGKIMRRVLRKVAVN 230
           + K+++R L    V+
Sbjct: 493 TFKVLKRQLSAEGVD 507

Length = 529

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 14/150 (9%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            +    G + + GR D  LN  G    V        TA+++  VE      P+V ++ VV
Sbjct: 479 IKITPHGGVIIYGRSDATLNPGG----VRI-----GTAEIYRVVEKI----PEVEDSLVV 525

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            +      E +  F+    G T +  LVK+++  +R  + P  +P  I   P +P T SG
Sbjct: 526 GQEVDDGDERMPLFVKLREGVTLDDALVKRIRSAIRAALSPRHVPAEIIAVPDIPYTLSG 585

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVD 247
           K +   ++K+ +  + V + + LA+ + +D
Sbjct: 586 KKVEVAVKKI-LLGKPVENVAALANPECLD 614

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 66.0 bits (161), Expect = 3e-12
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 24/149 (16%)

Query: 81  HNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE 140
           HN  +F            R   +GY+ V GR  D +N  G               K+  E
Sbjct: 398 HNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGE--------------KIAAE 443

Query: 141 -VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVK--QLKQQVREK-I 196
            +E  L +HP V +AA+VS P  + GE    FI            +K  QL++ +RE+ +
Sbjct: 444 EIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVR------DPALKAAQLRRFLRERGL 497

Query: 197 GPFAMPDVIQHAPRLPKTRSGKIMRRVLR 225
             + +PD ++    LP T  GK+ ++ LR
Sbjct: 498 AEYKLPDRVEFVDSLPLTAVGKVDKKALR 526

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 17/136 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
             DGY+ +  R  D++ +SG        G   S+     EVE  L  HP V  AAVV++P
Sbjct: 427 HPDGYIKIKDRSKDII-ISG--------GENISS----IEVEDVLYRHPAVLVAAVVAKP 473

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
            P  GE    F+    GA+  +E   ++    RE +  F +P  +     LPKT +GKI 
Sbjct: 474 DPKWGEVPCAFVELKDGASATEE---EIIAHCREHLAGFKVPKAVVFGE-LPKTSTGKIQ 529

Query: 221 RRVLRKVAVNDREVGD 236
           + VLR+ A + + +  
Sbjct: 530 KFVLREQAKSLKAIDL 545

Length = 545

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
              ++DG L   GR D  + + G+ + +              E+EA L + P V EA V+
Sbjct: 338 VYLEDDGLLVYLGRKDFQIKLHGYRIEL-------------EEIEAALRALPGVEEAVVL 384

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P   K   L  F+    GA       K LK+++++++ P+ +P    +   LP   +G
Sbjct: 385 PVPKGEKVVRLVAFVVGKEGA----LDTKALKKELKKRLPPYMIPRRFVYLDSLPLNANG 440

Query: 218 KIMRRVL 224
           KI R+ L
Sbjct: 441 KIDRKAL 447

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 18/127 (14%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           AR   DG +   GR+D  + + G  + +              E+E  L  HP V EAAV+
Sbjct: 366 ARWRPDGNIEFLGRIDRQVKIRGFRIEL-------------GEIEQALLQHPGVREAAVL 412

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            R      + L  ++   G          +L+  + E++  + +P        LP T +G
Sbjct: 413 VREDAAGDKRLVAYVVARGALD-----AAELRAHLAERLPAYMVPAAFVVLDELPLTANG 467

Query: 218 KIMRRVL 224
           K+ RR L
Sbjct: 468 KVDRRAL 474

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 13/59 (22%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
            R DEDGYL + GR DD + + G                   E+EA L  HP V+EAAV
Sbjct: 367 GRWDEDGYLEILGRKDDQVKIRGE---------RIEPG----EIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 31/131 (23%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              DEDG  ++  R  +++   G+              +V   E+EA L  HP V++AAV
Sbjct: 380 GYFDEDGNFYIVDRKKELIKYKGY--------------QVPPAELEAVLLEHPKVADAAV 425

Query: 157 VSRPHPVKGECLYCFITPA-GGATFNQELVKQLKQQVREKIGPFAMPDVIQH------AP 209
           +  P  V GE    ++    G     QE+   + ++V             Q         
Sbjct: 426 IGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKV---------AKYKQLRGGVVFVD 476

Query: 210 RLPKTRSGKIM 220
            +PK+ SGKI+
Sbjct: 477 EIPKSPSGKIL 487

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 16/127 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            RR  DG L   GR+DD + V G  +                E+EA L S P V+EA VV
Sbjct: 339 VRRRADGQLEYLGRIDDQVKVRGFRIE-------------LGEIEAALRSIPGVAEAVVV 385

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           +         L  +I    GA  +   ++ L+ ++  ++  + +P        LP T +G
Sbjct: 386 AIGDAAGDRQLVAYIVADPGAAID---IEDLRARLATRLPAYMVPSRFVRLDALPLTPNG 442

Query: 218 KIMRRVL 224
           KI R+ L
Sbjct: 443 KIDRKAL 449

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 18/129 (13%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAVV 157
             D  G+L++TGR  DM  +SG        GS      V+  E+E  L +HP VSE AV+
Sbjct: 403 HLDARGFLYITGRASDMY-ISG--------GS-----NVYPREIEEKLLTHPAVSEVAVL 448

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P PV GE          GA  ++    +L   +  K+  + +P        LPK+  G
Sbjct: 449 GVPDPVWGEVGVAVCVARDGAPVDEA---ELLAWLDGKVARYKLPKRFFFWDALPKSGYG 505

Query: 218 KIMRRVLRK 226
           KI ++++R+
Sbjct: 506 KITKKMVRE 514

Length = 528

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 62.9 bits (153), Expect = 2e-11
 Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 19/135 (14%)

Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162
           DGY+ +  R  D++ +SG        G   S+     EVE  + +HP V EA+VV+RP  
Sbjct: 443 DGYIEIKDRSKDII-ISG--------GENISS----LEVENVVYTHPAVLEASVVARPDE 489

Query: 163 VKGECLYCFITPAGGATFNQE--LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
             GE    F+T   G   + E  L + + +  RE++  + +P  +   P LPKT +GKI 
Sbjct: 490 RWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGP-LPKTATGKIQ 548

Query: 221 RRVLRKVAVNDREVG 235
           + VLR  A   +E+G
Sbjct: 549 KHVLRAKA---KEMG 560

Length = 567

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A RD DG+++  GR  D + V G  ++                +E  L  HP ++  AV 
Sbjct: 388 AYRDADGWIYFAGRTADWMRVDGENLSA-------------APIERILLRHPAINRVAVY 434

Query: 158 SRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + P    G+ +   +    GATF+       L  Q    +G  A P  ++ A  LP T +
Sbjct: 435 AVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQ--PDLGTKAWPRYVRIAADLPSTAT 492

Query: 217 GKIMRRVLR 225
            K+++R L 
Sbjct: 493 NKVLKRELI 501

Length = 540

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 33/158 (20%)

Query: 81  HNNFSFTTNN----SDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK 136
           HN  +F  N      DL+      D DGY+ V GR  D +N  G               K
Sbjct: 400 HNASAFDANGFYCSGDLVS----IDPDGYITVVGREKDQINRGGE--------------K 441

Query: 137 VFTE-VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVK--QLKQQVR 193
           +  E +E  L  HP V  AA+VS    + GE    F+         +E +K  QL++ +R
Sbjct: 442 IAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVV-------KEPLKAVQLRRFLR 494

Query: 194 EK-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN 230
           E+ I  F +PD ++    LP T  GK+ ++ LR+   +
Sbjct: 495 EQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 532

Length = 536

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 16/125 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE+G+L++T R  DM+ +SG        G   ++    +EVE  +   P+V+EAAV+   
Sbjct: 384 DEEGFLYLTDRKKDMI-ISG--------GENIAS----SEVERVIYELPEVAEAAVIGVH 430

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               GE +   +    GAT   E    L +  R+++  F +P  ++    LP+  SGK++
Sbjct: 431 DDRWGERITAVVVLNPGATLTLE---ALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVL 487

Query: 221 RRVLR 225
           +RVLR
Sbjct: 488 KRVLR 492

Length = 497

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 32/132 (24%)

Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAVVS 158
           + E G L   GR+DD++NVSG                V+  EVE  +   P V EA V  
Sbjct: 301 KSERGTLHFMGRMDDVINVSG--------------LNVYPIEVEDVMLRLPGVQEAVVYR 346

Query: 159 RPHPVKGE---CLYC---FITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLP 212
              PV GE           I P            QL++   + + P+ +P  I+    +P
Sbjct: 347 GKDPVAGERVKAKVISHEEIDPV-----------QLREWCIQHLAPYQVPHEIESVTEIP 395

Query: 213 KTRSGKIMRRVL 224
           K  +GK+ R++L
Sbjct: 396 KNANGKVSRKLL 407

Length = 414

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
              +EDG++ +  R+ +++   G       F  Y +      EVE  L  HP V +AAVV
Sbjct: 453 VVMEEDGFIRIVDRIKELIITGG-------FNVYPA------EVEEVLREHPGVEDAAVV 499

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P     E +   +    GA  + E    L+   RE +  + +P    H   LP+ + G
Sbjct: 500 GLPREDGSEEVVAAVVLEPGAALDPE---GLRAYCREHLTRYKVPRRFYHVDELPRDQLG 556

Query: 218 KIMRRVLRK 226
           K+ RR +R+
Sbjct: 557 KVRRREVRE 565

Length = 573

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 13/125 (10%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DEDGYL++T R   M+ +SG +  +Y             E E  L +HP V++AAV   P
Sbjct: 393 DEDGYLYLTDRAAFMI-ISGGV-NIYP-----------QEAENLLITHPKVADAAVFGVP 439

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
           +   GE +   + P  G      L  +L    R+++     P  I     LP+  +GK+ 
Sbjct: 440 NEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLY 499

Query: 221 RRVLR 225
           +R+LR
Sbjct: 500 KRLLR 504

Length = 511

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 17/136 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           AR D DGY+ ++GR  D++   G  + V              E+EA L  HP +++ A+V
Sbjct: 427 ARIDADGYIRISGRSKDVIIRGGENIPV-------------VEIEALLYRHPAIAQVAIV 473

Query: 158 SRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + P    GE    F+ P  G + + E +V+ LK Q   K+    +P+ +     LP+T S
Sbjct: 474 AYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQ---KVAKQYIPERLVVRDALPRTPS 530

Query: 217 GKIMRRVLRKVAVNDR 232
           GKI +  LR++   + 
Sbjct: 531 GKIQKFRLREMLRGED 546

Length = 547

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 104 GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPV 163
           G + + GR D  LN  G  M          +A+++  VE       +V E+  + +  P 
Sbjct: 513 GGIVIHGRSDSTLNPQGVRM---------GSAEIYNAVERL----DEVRESLCIGQEQPD 559

Query: 164 KGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRV 223
            G  +  F+  A GAT +  L+ ++K+ +R  + P  +PD I   P +P T +GK +   
Sbjct: 560 GGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVA 619

Query: 224 LRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255
           +++V +    V +   + + +++D L++   E
Sbjct: 620 VKRV-LQGTPVDNPGAIDNPELLD-LYEELAE 649

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 16/125 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D DGYL++  R  DM+ +SG        G     A    E+EA L + P V + AV   P
Sbjct: 390 DADGYLFLCDRKRDMV-ISG--------GVNIYPA----EIEAVLHAVPGVHDCAVFGIP 436

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               GE L   + P  GAT ++  ++    Q++ ++  + +P  I+    LP+  SGKI 
Sbjct: 437 DAEFGEALMAVVEPQPGATLDEADIRA---QLKARLAGYKVPKHIEIMAELPREDSGKIF 493

Query: 221 RRVLR 225
           +R LR
Sbjct: 494 KRRLR 498

Length = 509

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 23/144 (15%)

Query: 89  NNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH 148
           N  DL+    RRD  GY +   R+ D     G    V       ST    TEVE  LA H
Sbjct: 321 NTGDLV----RRDGFGYFYFVDRLGDTFRWKGE--NV-------ST----TEVEEVLAKH 363

Query: 149 PDVSEAAV--VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQ 206
           P V EA V  V  P   +G      +T A GA F+    +     + E++  +A P  ++
Sbjct: 364 PGVEEANVYGVEVPG-TEGRAGMAALTLAPGAAFD---PQAFAAHLDEQLPAYARPLFLR 419

Query: 207 HAPRLPKTRSGKIMRRVLRKVAVN 230
               +  T + K  +  LRK   +
Sbjct: 420 VQAAMETTGTFKYQKTDLRKEGFD 443

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 36/134 (26%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF----TEVEACLASHPDVSEAAV 156
           DEDGYL++  R+ +++   G                 F     E+EA L SHP++++AAV
Sbjct: 397 DEDGYLFIVDRLKELIKYKG-----------------FQVAPAELEALLLSHPEIADAAV 439

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF------AMPDVIQHAPR 210
           +  P    GE    F+    G+  +++   ++ Q V +++ P+         D I     
Sbjct: 440 IPYPDEEAGEIPMAFVVRQPGSELSED---EVMQFVAKQVAPYKKVRKVVFVDAI----- 491

Query: 211 LPKTRSGKIMRRVL 224
            PK+ SGKI+RR L
Sbjct: 492 -PKSPSGKILRREL 504

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)

Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE-VEACLASHPDVSEAAVVSRPH 161
           DG L V GR DD ++ +G L              V  + VEA LA+HP V++ AV   P 
Sbjct: 246 DGVLTVLGRADDAIS-TGGL-------------TVLPQVVEAALATHPAVADCAVFGLPD 291

Query: 162 PVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMR 221
              G+ +   +   GG       ++ L+  V   +   A P  +     LP+   GK+ R
Sbjct: 292 DRLGQRVVAAVVGDGGPA---PTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDR 348

Query: 222 RVLRK 226
           R L +
Sbjct: 349 RALVR 353

Length = 358

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 22/139 (15%)

Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR 159
           RD DG+     R+ D +   G  ++ +             EVE  L SHP V+ AAV   
Sbjct: 410 RDADGWFRFVDRIKDAIRRRGENISSF-------------EVEQVLLSHPAVAAAAVFPV 456

Query: 160 PHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
           P  +  + +   +    G       LV+  + +    +  FA+P  ++    LPKT +GK
Sbjct: 457 PSELGEDEVMAAVVLRDGTALEPVALVRHCEPR----LAYFAVPRYVEFVAALPKTENGK 512

Query: 219 IMRRVLRKVAVN----DRE 233
           + + VLR+  V     DRE
Sbjct: 513 VQKFVLREQGVTADTWDRE 531

Length = 542

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 17/131 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           AR DE G++++  R  DM+ VSG       F  Y +      E+E  +A  P V E A V
Sbjct: 445 ARMDEQGFVYIVDRKKDMILVSG-------FNVYPN------EIEDVIAMMPGVLEVAAV 491

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P    GE +   I     A   +++    K   R  +  +  P +I+    LPKT  G
Sbjct: 492 GVPDEKSGEIVKVVIVKKDPALTAEDV----KAHARANLTGYKQPRIIEFRKELPKTNVG 547

Query: 218 KIMRRVLRKVA 228
           KI+RR LR  A
Sbjct: 548 KILRRELRDAA 558

Length = 560

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKV-FTEVEACLASHPDVSEAAV 156
            R   DG +   GR D  + + G+              +V   E+EA LA HP V  A V
Sbjct: 367 GRYRPDGTIEFLGRADHQVKIRGY--------------RVELGEIEAALARHPGVQRAVV 412

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V        + L  F+    GA  +      L+  + E +  + +P        LP T +
Sbjct: 413 VVVGDG-GAKALAAFVVAEDGAAVDAA---VLRAALAELLPAYMVPSRFVVLDALPLTAN 468

Query: 217 GKIMRRVL 224
           GK+ R+ L
Sbjct: 469 GKVDRKAL 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQL--KQQV-REKI 196
           E+EA L SHP +++AAVV     V GE    F+  + G+   ++ +KQ   KQ V  ++I
Sbjct: 449 ELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRI 508

Query: 197 GPFAMPDVIQHAPRLPKTRSGKIMRRVLR-KVAVN 230
                 D I      PK  SGKI+R+ LR K+A  
Sbjct: 509 HKVFFVDSI------PKAPSGKILRKDLRAKLAAG 537

Length = 537

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE GY  +  R  DM+ VSG       F  Y +      E+E  +ASHP V E A V  P
Sbjct: 446 DERGYTKIVDRKKDMILVSG-------FNVYPN------EIEEVVASHPGVLEVAAVGVP 492

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               GE +  F+     A   +++    K+++      +  P  ++    LPKT  GKI+
Sbjct: 493 DEHSGEAVKLFVVKKDPALTEEDVKAFCKERLTN----YKRPKFVEFRTELPKTNVGKIL 548

Query: 221 RRVLR 225
           RR LR
Sbjct: 549 RRELR 553

Length = 557

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 16/127 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            R   DG L   GR DD + + G  + +              E+EA L +HP V++A VV
Sbjct: 328 VRWRPDGRLEYLGRADDQVKIRGFRIEL-------------GEIEAALRAHPGVADAVVV 374

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            R      + L  ++ P  GA  + E    L+  +R  +  + +P        LP T +G
Sbjct: 375 VREEGPGDQRLVAYVVPKAGAAPDAE---ALRAALRATLPAYMVPAAFVQLDELPLTPNG 431

Query: 218 KIMRRVL 224
           K+ R+ L
Sbjct: 432 KVDRKAL 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 58.6 bits (141), Expect = 7e-10
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE+GY+ +  R+ D++   G  +      S         ++E  L  HP V EAAVV+ P
Sbjct: 400 DEEGYVEIKDRLKDLIKSGGEWI-----SS--------VDLENALMGHPKVKEAAVVAIP 446

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM-PDVIQHAPRLPKTRSGKI 219
           HP   E     + P G     +EL + L +            PD    A  +P+T +GK 
Sbjct: 447 HPKWQERPLAVVVPRGEKPTPEELNEHLLK----AGFAKWQLPDAYVFAEEIPRTSAGKF 502

Query: 220 MRRVLRK 226
           ++R LR+
Sbjct: 503 LKRALRE 509

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 16/129 (12%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
           +   DE+G+ +   R  +M+   G  ++               E+E  +A+HP + +  V
Sbjct: 405 TGYVDEEGFFYFVDRRCNMIKRGGENVSC-------------VELENIIATHPKIQDIVV 451

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V     ++ E +  F+    G T ++E   +      + +  F +P  ++    LP+  S
Sbjct: 452 VGIKDSIRDEAIKAFVVLNEGETLSEE---EFFAFCEQNMAKFKVPSYLEIRKDLPRNCS 508

Query: 217 GKIMRRVLR 225
           GKI+++ L+
Sbjct: 509 GKIIKKNLK 517

Length = 517

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D  GY+ +T R  D++  SG        G + S+     ++E     HP V+EAAV+   
Sbjct: 421 DAYGYMRITDRSKDVIK-SG--------GEWISS----IDLENLAVGHPKVAEAAVIGVY 467

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
           HP   E     +    G T  +E + +       KI  + MPD +     +P T +GKI+
Sbjct: 468 HPKWDERPLLIVQLKPGETATREEILKYMDG---KIAKWWMPDDVAFVDAIPHTATGKIL 524

Query: 221 RRVLRK 226
           +  LR+
Sbjct: 525 KTALRE 530

Length = 542

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 24/125 (19%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYC-STA--KVFTE-VEACLASHPDVSE 153
           AR + DG + + GR                 GS C +T   KVF E VE  L +HPDV++
Sbjct: 416 ARVEADGTITLLGR-----------------GSVCINTGGEKVFPEEVEEALKAHPDVAD 458

Query: 154 AAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
           A VV  P    G+ +   +    GA  +     +L+   R  +  + +P  I     + +
Sbjct: 459 ALVVGVPDERWGQEVVAVVQLREGARPDLA---ELRAHCRSSLAGYKVPRAIWFVDEVQR 515

Query: 214 TRSGK 218
           + +GK
Sbjct: 516 SPAGK 520

Length = 533

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 29/164 (17%)

Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162
           DG++ +  R  D++ +SG        G   S+     EVE  L  +P V E AVV+ PHP
Sbjct: 433 DGHVEIKDRSKDII-ISG--------GENISS----VEVENVLYKYPKVLETAVVAMPHP 479

Query: 163 VKGECLYCFITPAGGATFNQELVKQLK-------QQVREKIGPFAMPDVIQHAPRLPKTR 215
             GE    F+    G T  ++ V +L        +  RE +  F  P  +     LPK  
Sbjct: 480 TWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNG 539

Query: 216 SGKIMRRVLRKVAVNDREVGDKSTLA-DEDVVDELFQNRPEGNV 258
           +GKI++  LR +A        K  +  DED V +    RP  + 
Sbjct: 540 NGKILKPKLRDIA--------KGLVVEDEDNVIKKVHQRPVEHF 575

Length = 579

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 16/132 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DEDGYL++  R+ +++   G  +                ++EA L SHP++ +AAV + P
Sbjct: 441 DEDGYLYIVDRLKEIIKYKGFQIAP-------------ADLEAVLISHPEIIDAAVTAVP 487

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               GE    F+    G+T +QE    +   V +++ P+     +     +PK+ +GKI+
Sbjct: 488 DKECGEIPVAFVVRRQGSTLSQE---AVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKIL 544

Query: 221 RRVLRKVAVNDR 232
           RR L++   N  
Sbjct: 545 RRELKRSLTNSV 556

Length = 560

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 56.2 bits (135), Expect = 4e-09
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 13/125 (10%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DEDGYL++  R   M+   G  + +Y             E E  L  HP V + AV+  P
Sbjct: 390 DEDGYLYLADRKSFMIISGG--VNIYP-----------QETENALTMHPAVHDVAVIGVP 436

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
            P  GE +   I    G   + EL ++L    R +I  +  P  ++    LP+T +GK++
Sbjct: 437 DPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLV 496

Query: 221 RRVLR 225
           + +LR
Sbjct: 497 KGLLR 501

Length = 501

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 19/129 (14%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D DG++ +  R  D++ VSG       F  Y +      E+E  + +HP V+  A +  P
Sbjct: 452 DPDGFVRIVDRKKDLIIVSG-------FNVYPN------EIEDVVMAHPKVANCAAIGVP 498

Query: 161 HPVKGECLYCFITP-AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
               GE +  F+     G +     V++LK   +E    + +P  I     LP T  GKI
Sbjct: 499 DERSGEAVKLFVVARDPGLS-----VEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKI 553

Query: 220 MRRVLRKVA 228
           +RR LR +A
Sbjct: 554 LRRELRDIA 562

Length = 562

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 14/127 (11%)

Query: 98   ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            ARR  DG L   GR+D  + + G+ + +              E+EA L    +V EAAV 
Sbjct: 4110 ARRRSDGVLEYVGRIDHQVKIRGYRIEL-------------GEIEARLHEQAEVREAAVA 4156

Query: 158  SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             +     G+ L  ++ P         L++++KQ++R ++  + +P       RLP   +G
Sbjct: 4157 VQEGV-NGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANG 4215

Query: 218  KIMRRVL 224
            K+ R+ L
Sbjct: 4216 KLDRKAL 4222

Length = 4334

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
           AR + DG + + GR    +N  G               KVF  EVE  L +HPDV++A V
Sbjct: 254 ARVEADGTITLLGRGSVCINTGGE--------------KVFPEEVEEALKAHPDVADALV 299

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V  P    G+ +   +    GA  +     +L+   R+ +  + +P  I     +P+  S
Sbjct: 300 VGVPDERWGQRVVAVVQLRAGAGLDLA---ELRDHCRQHLAGYKLPRAIVVVDTVPRAPS 356

Query: 217 GK 218
           GK
Sbjct: 357 GK 358

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 20/133 (15%)

Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVE-ACLASHPDVSEAAVV 157
           R   GY    GR DD +N+ G               KV + E+E  C A+   V E A +
Sbjct: 599 RTSGGYYRAHGRADDTMNLGG--------------IKVSSVEIERVCNAADESVLETAAI 644

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQ----QVREKIGPFAMPDVIQHAPRLPK 213
             P P  G               +   + +LK+     +++K+ P      +   P  P+
Sbjct: 645 GVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPR 704

Query: 214 TRSGKIMRRVLRK 226
           T S K+MRRVLR+
Sbjct: 705 TASNKVMRRVLRQ 717

Length = 728

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 22/129 (17%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D+DG +++  R+ +++   G  +                E+EA L +HP V +AAVV  P
Sbjct: 428 DDDGDIFIVDRIKELIKYKGFQVAP-------------AELEAILLTHPSVEDAAVVPLP 474

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQ---LKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
               GE       PA     N +  +    +   V   +  +    V+Q    +PK+ SG
Sbjct: 475 DEEAGE------IPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSG 528

Query: 218 KIMRRVLRK 226
           KIMRR+L++
Sbjct: 529 KIMRRLLKE 537

Length = 546

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A  D DG   + GR    L  SG     Y  G+         E+E  L  HP V EAAVV
Sbjct: 358 AVVDPDGMHRIVGRESTDLIKSGG----YRIGA--------GEIETALLGHPGVREAAVV 405

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P    G+ +  ++  A       EL+  + QQ    +     P  ++    LP+   G
Sbjct: 406 GVPDDDLGQRIVAYVVGADDVA-ADELIDFVAQQ----LSVHKRPREVRFVDALPRNAMG 460

Query: 218 KIMRRVLR 225
           K++++ L 
Sbjct: 461 KVLKKQLL 468

Length = 471

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 52.3 bits (125), Expect = 8e-08
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 16/124 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D  G L++ GR DDM+   G    VY              VE  LA+HP V++ AV+  P
Sbjct: 407 DNAGRLFIVGREDDMIISGGE--NVYP-----------RAVENALAAHPAVADNAVIGVP 453

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               G  L  F+    G+  +     QL+  +++++  F  P  I     +P+  +GK++
Sbjct: 454 DERFGHRLAAFVVLHPGSGVDAA---QLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVL 510

Query: 221 RRVL 224
           R+ L
Sbjct: 511 RKEL 514

Length = 516

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE GY+ + GR  DM+   G    +Y             E+E  L +HP V++  V   P
Sbjct: 439 DEQGYVRIVGRSKDMIIRGGE--NIY-----------PREIEEFLFTHPAVADVQVFGVP 485

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               GE +  ++    G   ++E   +L++  + +I  F +P   +     P T +GK+ 
Sbjct: 486 DEKYGEEIVAWVRLHPGHAASEE---ELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQ 542

Query: 221 RRVLRKVAVND 231
           +  +R++++ +
Sbjct: 543 KFRMREISIEE 553

Length = 558

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 17/130 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A +D +GY+ + GR  D++   G  + V              E+E  L  HP V++ A+V
Sbjct: 425 AFQDAEGYIRINGRSKDVIIRGGENIPV-------------VEIENLLYQHPAVAQVAIV 471

Query: 158 SRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + P    GE     + P  G T +   +V  LK Q   K+    +P+ ++    LP T +
Sbjct: 472 AYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQ---KVALQYIPERLEVVDALPATPA 528

Query: 217 GKIMRRVLRK 226
           GKI +  LR+
Sbjct: 529 GKIQKFRLRE 538

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 17/131 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            R  EDG L   GR DD + + G  + +              E+EA L + P V  AAVV
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIEL-------------GEIEAVLRALPGVVVAAVV 377

Query: 158 -SRPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
                P  G+ L  F+   G A        +  L+  +RE++  + +P V      LP T
Sbjct: 378 LLLDDP-GGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDELPLT 436

Query: 215 RSGKIMRRVLR 225
            SGK+ R+ LR
Sbjct: 437 ASGKVDRKALR 447

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D DGY ++  R  DM+   G       F  Y         +E  +  HP V E  V+  P
Sbjct: 432 DTDGYFFLVDRKKDMIISGG-------FNVYPQM------IEQAIYEHPGVQEVIVIGIP 478

Query: 161 HPVKGECLYCFIT-PAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
              +GE    F+    G   F+   + +L+  +  K+G   +P  ++    LP+T  GK+
Sbjct: 479 DQYRGEAAKAFVKLRPGAKPFS---LDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKL 535

Query: 220 MRRVLR 225
            R  LR
Sbjct: 536 SRHELR 541

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 17/136 (12%)

Query: 98   ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            AR   DG +   GR+D  + + G  + +              E+EA L +HP V EA VV
Sbjct: 2389 ARYRADGVVEYLGRIDHQVKIRGFRIEL-------------GEIEARLQAHPAVREAVVV 2435

Query: 158  SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            ++     G+ L  ++ P   A    +L+ +L+  +  ++  + +P       RLP   +G
Sbjct: 2436 AQDGA-SGKQLVAYVVPDDAAE---DLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNG 2491

Query: 218  KIMRRVLRKVAVNDRE 233
            K+ R+ L K  V+   
Sbjct: 2492 KLDRKALPKPDVSQLR 2507

Length = 5163

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 22/129 (17%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS--YCSTAKVFTEVEACLASHPDVSEAA 155
              D +G+L+V GR DD++ +SG        G   Y        E+E  L  HP + EA 
Sbjct: 328 GELDGEGFLYVLGRRDDLI-ISG--------GENIYPE------EIETVLYQHPGIQEAV 372

Query: 156 VVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
           VV +P    G+    +I     +  +Q    +L   + EK+  + +P   +    LP   
Sbjct: 373 VVPKPDAEWGQVPVAYIV--SESDISQA---KLIAYLTEKLAKYKVPIAFEKLDELPYNA 427

Query: 216 SGKIMRRVL 224
           SGKI+R  L
Sbjct: 428 SGKILRNQL 436

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 26/134 (19%)

Query: 101 DEDGYLWVTGRVDDML-----NVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAA 155
           DE+GY+ + GR+ DM+     N+                     E+E  L +HP + +  
Sbjct: 438 DEEGYVNIVGRIKDMIIRGGENIYPR------------------EIEEFLYTHPKIQDVQ 479

Query: 156 VVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
           VV  P    GE +  +I    GAT  +E V+      R KI  + +P  I+     P T 
Sbjct: 480 VVGVPDEKYGEEVCAWIILRPGATLTEEDVRDF---CRGKIAHYKIPRYIRFVDEFPMTV 536

Query: 216 SGKIMRRVLRKVAV 229
           +GKI +  +R++ +
Sbjct: 537 TGKIQKFKMREMMI 550

Length = 559

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 18/130 (13%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
           R DE GY+ +TGR  D++ V G        G   S+     EVE  L  HP + +A VV+
Sbjct: 419 RMDEAGYIKITGRKKDII-VRG--------GENISS----REVEDILLQHPKIHDACVVA 465

Query: 159 RPHPVKGE--CLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
            P    GE  C Y  +     +   +E+V       R+++  +  P+ I    +LP+T S
Sbjct: 466 MPDERLGERSCAYVVLKAPHHSLTLEEVVAFFS---RKRVAKYKYPEHIVVIDKLPRTAS 522

Query: 217 GKIMRRVLRK 226
           GKI + +LRK
Sbjct: 523 GKIQKFLLRK 532

Length = 547

>gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 143 ACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP 202
           A L S P VS+ A+     P KG  LY F+     A       K L+ ++     P   P
Sbjct: 247 AALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELPAD-----EKSLRARLAGAKPPKP-P 300

Query: 203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADED 244
           + IQ    LP+   G +   +LR +A+N  +  D      E 
Sbjct: 301 EHIQPVAALPRDADGTVRDDILRLIAMNQIDELDDLLREPEI 342

Length = 365

>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 20/129 (15%)

Query: 104 GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVE-ACLASHPDVSEAAVVSRPHP 162
           GY  V GR DD +N+ G             T+ V  E+E AC  +   ++E A V    P
Sbjct: 371 GYFCVQGRADDTMNLGG-----------IKTSSV--EIERACDRAVAGIAETAAVGVAPP 417

Query: 163 VKG-ECLYCFITPAG-GATFNQ----ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
             G E L  F+        F+Q     L K+ ++ ++  + P      ++  P LP+  S
Sbjct: 418 DGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNAS 477

Query: 217 GKIMRRVLR 225
            K++RRVLR
Sbjct: 478 NKLLRRVLR 486

Length = 499

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 19/134 (14%)

Query: 98   ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            AR   DG +   GRVD  + + G  + +              E+EA L  HP V EA V+
Sbjct: 4937 ARYRADGVIDYLGRVDHQVKIRGFRIEL-------------GEIEARLREHPAVREAVVI 4983

Query: 158  SRPHPVKGECLYCFITPAGGA-----TFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLP 212
            ++   V G+ L  ++ P   A         EL  +LK  +RE++  + +P  +    R+P
Sbjct: 4984 AQEGAV-GKQLVGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMP 5042

Query: 213  KTRSGKIMRRVLRK 226
             T +GK+ R+ L +
Sbjct: 5043 LTPNGKLDRKALPQ 5056

Length = 5163

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 18/128 (14%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
           + DE GY+ + GR  D L +SG    VY         K   EVE  +   P V E+AV+ 
Sbjct: 386 KIDERGYVHIVGRGKD-LIISGGY-NVY--------PK---EVEGEIDELPGVVESAVIG 432

Query: 159 RPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            PHP  GE +   + P  GA  +   ++  LK +    +  F  P  +     LP+   G
Sbjct: 433 VPHPDFGEGVTAVVVPKPGAALDEAAILAALKGR----LARFKQPKRVFFVDELPRNTMG 488

Query: 218 KIMRRVLR 225
           K+ + +LR
Sbjct: 489 KVQKNLLR 496

Length = 504

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 19/136 (13%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAVVSR 159
           D  GYL + GR    + ++G        G       V+  EVEA + +   V +  V+  
Sbjct: 335 DAQGYLHILGRNSQKI-ITG--------GE-----NVYPAEVEAAILATGLVQDVCVLGL 380

Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
           P P  GE +     P   +      +++LK  +++++ PF  P      P+LP+   GKI
Sbjct: 381 PDPHWGEVVTAIYVPKDPSIS----LEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKI 436

Query: 220 MRRVLRKVAVNDREVG 235
            R+ L+++AV    + 
Sbjct: 437 NRQQLQQIAVQRLGLP 452

Length = 452

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 16/131 (12%)

Query: 98   ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            AR   DG +   GR+D  + + G  + +              E+EA L + P V EA V+
Sbjct: 898  ARYRADGVIEYLGRMDHQVKIRGFRIEL-------------GEIEARLLAQPGVREAVVL 944

Query: 158  SRPHPVKGECLYCFITPAGGA--TFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
            ++P    G  L  ++ PA  A    +Q    +LK Q+R+ +  + +P  +     LP T 
Sbjct: 945  AQPG-DAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTP 1003

Query: 216  SGKIMRRVLRK 226
            +GK+ R+ L K
Sbjct: 1004 NGKLDRKALPK 1014

Length = 3956

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 26/86 (30%), Positives = 43/86 (50%)

Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
           EVE  +     V+EAAVV+         L  F+    GAT +  +++ L + +  ++  F
Sbjct: 402 EVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAF 461

Query: 200 AMPDVIQHAPRLPKTRSGKIMRRVLR 225
            +P       RLP+T +GK++R  LR
Sbjct: 462 KVPHRFAVVDRLPRTPNGKLVRGALR 487

Length = 705

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 32/143 (22%)

Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKV-FTEVEACLASHPDVSEAAVVS 158
           +DE+GY  +  R DD + +SG+              KV    +E  +  HP V E   + 
Sbjct: 502 KDENGYYTIVSRSDDQIKISGN--------------KVQLNTIETSILKHPLVLECCSIG 547

Query: 159 RPHPVKGECLYCFITPAGGATFNQEL------VKQLKQQVRE----KIGPFAMPDVIQHA 208
              P       C+  P G     Q+       + +LK ++       I   A+   I   
Sbjct: 548 IYDPD------CYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIV 601

Query: 209 PRLPKTRSGKIMRRVLRKVAVND 231
            +LPKT++GKI R+++ K  +ND
Sbjct: 602 NQLPKTKTGKIPRQIISKF-LND 623

Length = 647

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 21/130 (16%)

Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDV---SEAAVVSR 159
           DG L +TGR  DM+ ++G    V ++ ++        E+EA +   P V     AA   R
Sbjct: 441 DGRLTITGREKDMIIING----VNYY-NH--------EIEAAVEQVPGVEPSFTAACAVR 487

Query: 160 PHPVKGECLYCFITPAGGATFNQ-ELVKQLKQQVREKIGPFAMPDVIQHAPR--LPKTRS 216
                 + L  F  P          L++ ++  V  KIG    P  +    +   PKT  
Sbjct: 488 DAGSGTDELAVFFVPRYDLDDRLAALLRAIRTHVARKIG--IAPAYVIPLAKEDFPKTSL 545

Query: 217 GKIMRRVLRK 226
           GKI R  LRK
Sbjct: 546 GKIQRAQLRK 555

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 17/136 (12%)

Query: 98   ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            AR   DG +   GR+D  + + G  + +              E+EA L  HP V EA V+
Sbjct: 3479 ARYRADGVIEYLGRIDHQVKIRGFRIEL-------------GEIEARLLQHPSVREAVVL 3525

Query: 158  SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            +R     G+ L  ++ P   A    +  + L+  +   +  + +P  +     +P   +G
Sbjct: 3526 ARDGA-GGKQLVAYVVP---ADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNG 3581

Query: 218  KIMRRVLRKVAVNDRE 233
            K+ R+ L         
Sbjct: 3582 KVDRKALPDPDAKGSR 3597

Length = 3956

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 23/140 (16%)

Query: 89  NNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH 148
           N  DLL     R EDG+ ++ GR  +M+ + G +                 EV+      
Sbjct: 405 NTGDLL----ERREDGFFYIKGRSSEMI-ICGGVNIAP------------DEVDRIAEGV 447

Query: 149 PDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV----REKIGPFAMPDV 204
             V EAA    P    G  +   +  +  A  ++   + LK  +    R +  P A P  
Sbjct: 448 SGVREAACYEIPDEEFGALVGLAVVAS--AELDESAARALKHTIAARFRRESEPMARPST 505

Query: 205 IQHAPRLPKTRSGKIMRRVL 224
           I     +P+T+SGK+MR  L
Sbjct: 506 IVIVTDIPRTQSGKVMRASL 525

Length = 540

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D DG++ +T R  D++  SG        G + S+     ++E    +HP V+EAA ++  
Sbjct: 420 DADGFMQITDRSKDVIK-SG--------GEWISS----IDIENVAVAHPAVAEAACIACA 466

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
           HP   E     +    GA   +E   +L      K+  + +PD +     +P T +GK+ 
Sbjct: 467 HPKWDERPLLVVVKRPGAEVTRE---ELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQ 523

Query: 221 RRVLR 225
           +  LR
Sbjct: 524 KLKLR 528

Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 98   ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            AR   DG +   GRVD  + + G  + +              E+EA L  HP V EA V+
Sbjct: 3432 ARYRADGVIEYIGRVDHQVKIRGFRIEL-------------GEIEARLLEHPWVREAVVL 3478

Query: 158  SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            +    V G  L  ++ P   A    +L + LK  ++  +  + +P  +    R+P T +G
Sbjct: 3479 A----VDGRQLVAYVVPEDEAG---DLREALKAHLKASLPEYMVPAHLLFLERMPLTPNG 3531

Query: 218  KIMRRVLRKV 227
            K+ R+ L + 
Sbjct: 3532 KLDRKALPRP 3541

Length = 5163

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
           E+E  L + P V+ A VV      K      F+ P  GA+ ++     L    RE +  F
Sbjct: 443 EIEHALEALPGVAAAQVVGATRDGKTVP-VAFVIPTDGASPDEA---GLMAACREALAGF 498

Query: 200 AMPDVIQHAPRLPKTRSG---KIMRRVLRKVA 228
            +P  +Q     P T S    KI +  LR++A
Sbjct: 499 KVPARVQVVEAFPVTESANGAKIQKHRLREMA 530

Length = 540

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 19/62 (30%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGH---LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEA 154
            R   DG L   GR+DD + + G+   L                 E+EA L  HP V EA
Sbjct: 364 VRYLPDGNLEFLGRIDDQVKIRGYRIEL----------------GEIEAALLRHPGVREA 407

Query: 155 AV 156
            V
Sbjct: 408 VV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D  G + + GRVDDM+   G  +               +EVE  L   P V+E  V+  P
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHP-------------SEVERVLGRAPGVTEVVVIGLP 433

Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               G+ +   + P  G T + + +         ++  F  P        LPK    K++
Sbjct: 434 DERWGQSVTACVVPREGETLSADALDTF--CRASELADFKRPRRYFFLDELPKNAMNKVL 491

Query: 221 RRVL 224
           RR L
Sbjct: 492 RRQL 495

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 19/126 (15%)

Query: 94  LLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSE 153
           L      D+DG   + GR D++L V          G   S       V   L  +P V  
Sbjct: 279 LQDRLAWDKDGGFTILGRKDEILQVG---------GVNVSPG----HVRDILERNPRVRA 325

Query: 154 AAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
           AAV  R     G  L  FI  A  A    EL  +L+      +   A PD  +    LP+
Sbjct: 326 AAV--RLD---GRRLKAFIVVAEDAD-EAELEIELRATAARHLPAPARPDRFRFGTELPR 379

Query: 214 TRSGKI 219
           T +GK+
Sbjct: 380 TGAGKL 385

This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH-PDVSEAAV 156
            + DEDG+L + GR+     + G ++++             T VE  L+   P+ S  A 
Sbjct: 376 GKIDEDGFLTIVGRLKRFAKIGGEMVSL-------------TAVEELLSEILPEDSLHAA 422

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK-IGPFAMPDVIQHAPRLPKTR 215
           V  P   KGE +    T            ++L   +RE  +   A+P  I H   +P   
Sbjct: 423 VEVPDEKKGEKIVLLTTTEDLD------PEELNAILREAGLPNLAVPRKILHVDEIPLLG 476

Query: 216 SGKIMRRVLRKVA 228
           SGK   R L+K+A
Sbjct: 477 SGKTDYRGLKKLA 489

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 19/129 (14%)

Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACL-ASHPDVSEAAVVSRPH 161
           DG L+VTGR+ D++ + G     Y             ++EA +  +HP +   A  +   
Sbjct: 429 DGELYVTGRLKDLIIIRGR--NHY-----------PQDIEATVERAHPALRPGAAAAFSV 475

Query: 162 PVKGE---CLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSG 217
              GE    +   +   G       L + ++  V  + G  A  DV+   P  LPKT SG
Sbjct: 476 DGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHG-VAPADVVLVRPGTLPKTSSG 534

Query: 218 KIMRRVLRK 226
           KI RR  R+
Sbjct: 535 KIQRRACRE 543

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)

Query: 98   ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            AR   DG +   GR+D  + + G  + +              E+EA L  HP V EAAV+
Sbjct: 894  ARYRADGVIEYAGRIDHQVKLRGLRIEL-------------GEIEARLLEHPWVREAAVL 940

Query: 158  SRPHPVKGECL--YCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
            +    V G+ L  Y  +   GG        + LK  +   +  + +P       RLP T 
Sbjct: 941  A----VDGKQLVGYVVLESEGGD-----WREALKAHLAASLPEYMVPAQWLALERLPLTP 991

Query: 216  SGKIMRRVLRKVAVNDREVG 235
            +GK+ R+ L     +  + G
Sbjct: 992  NGKLDRKALPAPEASVAQQG 1011

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 19/132 (14%)

Query: 98   ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            AR   DG +   GR+D  + + G  + +              E+EA L     V EA V+
Sbjct: 1962 ARYRADGVIEYLGRIDHQVKIRGFRIEL-------------GEIEARLREQGGVREAVVI 2008

Query: 158  SRPHPVKGECLYCFITPAG-----GATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLP 212
            ++     G+ L  ++ P              L   LK  ++  +  + +P  +    R+P
Sbjct: 2009 AQDGA-NGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMP 2067

Query: 213  KTRSGKIMRRVL 224
             T +GK+ R+ L
Sbjct: 2068 LTPNGKLDRKAL 2079

Length = 3956

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 33/155 (21%)

Query: 89  NNSDLLLSSARRDEDGYLWVTGRVDDML-----NVSGHLMTVYFFGSYCSTAKVFTEVEA 143
           N  DL+    R D  G+     R+ D       NV+              T    TEVE 
Sbjct: 442 NTGDLM----RDDGFGHAQFVDRLGDTFRWKGENVA--------------T----TEVEN 479

Query: 144 CLASHPDVSEAAV--VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM 201
            L+  P V EA V  V  P    G      I  A GA F+   +  L   + E++  +A+
Sbjct: 480 ALSGFPGVEEAVVYGVEVPG-TDGRAGMAAIVLADGAEFD---LAALAAHLYERLPAYAV 535

Query: 202 PDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGD 236
           P  ++  P L  T + K  +  LRK   +  +V D
Sbjct: 536 PLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDD 570

Length = 600

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 15/128 (11%)

Query: 99   RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
            R   DG +   GR+D  + + G  + +              E+E+ L  HP V EA V++
Sbjct: 2577 RLRADGLVEYVGRIDHQVKIRGFRIEL-------------GEIESRLLEHPAVREAVVLA 2623

Query: 159  RPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
               P   +     ++   G        L + LK  +++++  + +P  +     LP T +
Sbjct: 2624 LDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAHLILLDSLPLTAN 2683

Query: 217  GKIMRRVL 224
            GK+ RR L
Sbjct: 2684 GKLDRRAL 2691

Length = 4334

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 22/133 (16%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           AR  +DG +   GR DD L + G  + +              E++  + + PDV +A   
Sbjct: 845 ARWLDDGAVEYLGRSDDQLKIRGQRIEL-------------GEIDRAMQALPDVEQAVTH 891

Query: 158 SR------PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL 211
           +               L  ++    G   +      L+ Q+RE++ P  +P V+    +L
Sbjct: 892 ACVINQAAATGGDARQLVGYLVSQSGLPLDTSA---LQAQLRERLPPHMVPVVLLQLDQL 948

Query: 212 PKTRSGKIMRRVL 224
           P + +GK+ R+ L
Sbjct: 949 PLSANGKLDRKAL 961

Length = 1296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
KOG1176|consensus	537		100.0
KOG1175|consensus	626		99.98
PTZ00237	647	acetyl-CoA synthetase; Provisional	99.97
PLN02654	666	acetate-CoA ligase	99.97
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.97
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.97
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	99.97
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.97
PRK00174	637	acetyl-CoA synthetase; Provisional	99.96
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	99.96
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	99.96
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.96
PLN02574	560	4-coumarate--CoA ligase-like	99.96
PLN03051	499	acyl-activating enzyme; Provisional	99.95
KOG1177|consensus	596		99.95
PRK04319	570	acetyl-CoA synthetase; Provisional	99.95
PRK07867	529	acyl-CoA synthetase; Validated	99.95
PLN02246	537	4-coumarate--CoA ligase	99.95
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	99.94
PLN03102	579	acyl-activating enzyme; Provisional	99.94
PRK06060	705	acyl-CoA synthetase; Validated	99.94
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK06839	496	acyl-CoA synthetase; Validated	99.94
PRK07788	549	acyl-CoA synthetase; Validated	99.94
PLN02860	563	o-succinylbenzoate-CoA ligase	99.94
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.94
PRK13390	501	acyl-CoA synthetase; Provisional	99.94
PRK12467	3956	peptide synthase; Provisional	99.94
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.94
PRK07529	632	AMP-binding domain protein; Validated	99.94
PRK07638	487	acyl-CoA synthetase; Validated	99.94
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.94
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.94
PLN02330	546	4-coumarate--CoA ligase-like 1	99.94
PRK05691	4334	peptide synthase; Validated	99.94
PRK07514	504	malonyl-CoA synthase; Validated	99.94
PRK09274	552	peptide synthase; Provisional	99.94
PRK07470	528	acyl-CoA synthetase; Validated	99.94
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK06145	497	acyl-CoA synthetase; Validated	99.94
PRK12316	5163	peptide synthase; Provisional	99.93
PRK05852	534	acyl-CoA synthetase; Validated	99.93
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	99.93
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.93
PRK13391	511	acyl-CoA synthetase; Provisional	99.93
PRK05857	540	acyl-CoA synthetase; Validated	99.93
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.93
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.93
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.93
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.93
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.93
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.93
PLN03052	728	acetate--CoA ligase; Provisional	99.93
PRK13388	540	acyl-CoA synthetase; Provisional	99.93
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	99.93
PRK06178	567	acyl-CoA synthetase; Validated	99.93
PRK09088	488	acyl-CoA synthetase; Validated	99.93
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.93
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	99.93
PRK06164	540	acyl-CoA synthetase; Validated	99.93
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	99.93
PRK12316	5163	peptide synthase; Provisional	99.93
PRK08316	523	acyl-CoA synthetase; Validated	99.93
PRK12467	3956	peptide synthase; Provisional	99.93
PRK08315	559	AMP-binding domain protein; Validated	99.93
PRK12583	558	acyl-CoA synthetase; Provisional	99.93
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.93
PRK06188	524	acyl-CoA synthetase; Validated	99.93
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.93
PRK10946	536	entE enterobactin synthase subunit E; Provisional	99.93
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.93
PRK13382	537	acyl-CoA synthetase; Provisional	99.93
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.92
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.92
PLN02736	651	long-chain acyl-CoA synthetase	99.92
PLN02479	567	acetate-CoA ligase	99.92
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.92
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.92
PRK07787	471	acyl-CoA synthetase; Validated	99.92
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.92
PRK05691	4334	peptide synthase; Validated	99.92
PRK08162	545	acyl-CoA synthetase; Validated	99.92
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.92
PRK07868	994	acyl-CoA synthetase; Validated	99.92
PRK07798	533	acyl-CoA synthetase; Validated	99.92
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.92
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.91
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.91
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.91
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.91
PRK13383	516	acyl-CoA synthetase; Provisional	99.9
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.9
PLN02614	666	long-chain acyl-CoA synthetase	99.9
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.9
PRK05850	578	acyl-CoA synthetase; Validated	99.9
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.89
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.89
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.89
PRK09192	579	acyl-CoA synthetase; Validated	99.89
PRK09188	365	serine/threonine protein kinase; Provisional	99.89
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.89
PRK08308	414	acyl-CoA synthetase; Validated	99.87
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.87
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.87
PTZ00216	700	acyl-CoA synthetase; Provisional	99.86
PTZ00342	746	acyl-CoA synthetase; Provisional	99.86
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.84
PRK12582	624	acyl-CoA synthetase; Provisional	99.83
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.83
KOG1256|consensus	691		99.82
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.74
KOG1180|consensus	678		99.72
KOG1179|consensus	649		99.69
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.57
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.52
KOG1178|consensus	1032		99.5
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	99.32
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.29
PTZ00297	1452	pantothenate kinase; Provisional	98.96
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	98.72
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	98.71
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	98.7
KOG3628|consensus	1363		98.45
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	97.52
KOG3628|consensus	1363		95.55
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	93.74
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	90.58
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	83.37

>KOG1176|consensus

Probab=100.00  E-value=1.5e-34  Score=275.29  Aligned_cols=171  Identities=31%  Similarity=0.449  Sum_probs=161.3

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .++.+++|..+++++.|+.+..|...|+  ||++||++|+..|+        ++|||+|||+|++|+||+|+|++|.+|+
T Consensus       364 ~~v~~e~g~~l~~~~~GEI~vrg~~imk--GY~~NpeaT~~~~~--------~~GW~~TGDiGy~D~DG~l~IvdR~Kdl  433 (537)
T KOG1176|consen  364 VKVLDETGVSLGPNQTGEICVRGPQVMK--GYLKNPEATKEAFD--------DDGWFHTGDLGYFDEDGYLYIVDRSKDL  433 (537)
T ss_pred             EEeeCCCCCCCCCCCceEEEEECcccch--hhcCChHHHHhhcc--------cCCccccCceEEEcCCCeEEEecchhhh
Confidence            4556788999999999999999999999  99999999999996        3499999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      ||.+|.++         +|.    |||++|.+||.|.||+|++.+|+..|+.++|+|+..++....+   +++.+.++++
T Consensus       434 Ik~~G~qv---------~P~----EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte---~di~~~v~k~  497 (537)
T KOG1176|consen  434 IKYGGEQV---------SPA----EIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTE---KDIIEYVRKK  497 (537)
T ss_pred             eeeCCEEe---------CHH----HHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCH---HHHHHHHHhh
Confidence            99999999         999    9999999999999999999999999999999999998777776   7999999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +++++.|..++++++||+|++|||+|+.|++.+.+..
T Consensus       498 l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~  534 (537)
T KOG1176|consen  498 LPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLG  534 (537)
T ss_pred             CChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999998754

>KOG1175|consensus

Probab=99.98  E-value=1.9e-31  Score=255.03  Aligned_cols=195  Identities=43%  Similarity=0.674  Sum_probs=174.4

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccc-c--ccccCChH-HHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEee
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMK-S--LKFQNTSK-VRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGR  111 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~-~--~gy~~~~~-~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR  111 (258)
                      .|.+. .|+.++... +.++++...++. +  .+|++|++ ....+|.       ...|+|.|||.+++|+||++|++||
T Consensus       426 ~i~de-~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~-------k~pg~y~tGD~~~rd~dGY~~i~GR  496 (626)
T KOG1175|consen  426 QILDE-NGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFK-------KFPGYYFTGDGGRRDEDGYYWILGR  496 (626)
T ss_pred             EEECC-CCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcc-------cCCceEEecCceEEcCCceEEEEec
Confidence            45554 577776654 555565555555 3  78999988 6666665       5689999999999999999999999


Q ss_pred             CCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHH
Q psy12528        112 VDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQ  191 (258)
Q Consensus       112 ~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~  191 (258)
                      .||+||++|+++         +++    |||+++.+||.|.|++|++.+++..++.++|||++.++....+++.++|++.
T Consensus       497 ~DDviNvsGhRi---------gta----EIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~  563 (626)
T KOG1175|consen  497 VDDVINVSGHRI---------GTA----EIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKH  563 (626)
T ss_pred             ccccccccceee---------cHH----HHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHH
Confidence            999999999999         999    9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHc
Q psy12528        192 VREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR  253 (258)
Q Consensus       192 l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  253 (258)
                      ++..+++++.|+.|+++++||+|.||||+|+.||+....+ .+++..+..+++++..+.+..
T Consensus       564 VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~-~~~d~st~~dp~v~~~~~~~~  624 (626)
T KOG1175|consen  564 VRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK-AVGDTSTLADPSVIDHLRSIL  624 (626)
T ss_pred             HHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC-ccccccccCChHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998 689999999999999887753

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=99.97  E-value=1.1e-30  Score=255.98  Aligned_cols=196  Identities=19%  Similarity=0.244  Sum_probs=163.8

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecc-cccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRA-MKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~-~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      .|.++ +|.+++.++.|+..+.++.+ ....||+++++.+..+|.       ..+|||+|||++++|++|+|+|+||.||
T Consensus       445 ~i~d~-~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~-------~~~g~~~TGDlg~~d~dG~l~i~GR~dd  516 (647)
T PTZ00237        445 SILSE-DGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFS-------KFPGYYNSGDLGFKDENGYYTIVSRSDD  516 (647)
T ss_pred             EEECC-CCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHh-------CCCCEEECCcEEEECCCCeEEEEeccCC
Confidence            44443 46666666666555554421 112599999999988885       3468999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC---Ccc-HHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA---TFN-QELVKQLKQ  190 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~---~~~-~~~~~~l~~  190 (258)
                      +||++|++|         +|.    |||++|.+||.|.+|+|++++++..++.+++||++.++.   ..+ +++.++|++
T Consensus       517 ~i~~~G~rI---------~p~----eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~  583 (647)
T PTZ00237        517 QIKISGNKV---------QLN----TIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINN  583 (647)
T ss_pred             EEEECCEEe---------CHH----HHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHH
Confidence            999999999         999    999999999999999999999998889999999987432   222 456678899


Q ss_pred             HHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHc
Q psy12528        191 QVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR  253 (258)
Q Consensus       191 ~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  253 (258)
                      .++++++++++|+.+++++++|+|++|||+|+.|++++... ..+..++..+++++.+|.+..
T Consensus       584 ~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~-~~~~~~~~~~~~~~~~~~~~~  645 (647)
T PTZ00237        584 IITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDS-NYQLPDNVNDSEIFYKIKELY  645 (647)
T ss_pred             HHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCC-CCCCCccccCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999997654 478899999999999986643

>PLN02654 acetate-CoA ligase

Probab=99.97  E-value=6.3e-30  Score=251.36  Aligned_cols=191  Identities=44%  Similarity=0.631  Sum_probs=161.5

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      |.+++.+..|+..+.++.+....||+++++.+...+-.      ..+|||+|||++++|+||+++|+||.||+||++|++
T Consensus       472 g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~------~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~r  545 (666)
T PLN02654        472 GKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFK------PFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHR  545 (666)
T ss_pred             CCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhh------cCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEE
Confidence            45554433444444432122235999999887665421      236899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    |||++|.+||+|.+++|++++++..++.+++||++.++...++++.++|++.++++|+++++|
T Consensus       546 i---------~p~----EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P  612 (666)
T PLN02654        546 I---------GTA----EVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAP  612 (666)
T ss_pred             E---------CHH----HHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCC
Confidence            9         999    999999999999999999999988899999999998876666777789999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhccc-ccCCCCCCCchHHHHHHHHH
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQN  252 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~  252 (258)
                      ..+++++++|+|.+|||+|+.|++.+.... ..++.++..+++.+.++.+.
T Consensus       613 ~~i~~v~~lP~T~sGKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (666)
T PLN02654        613 DKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIAL  663 (666)
T ss_pred             CEEEECCCCCCCCCcCchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHh
Confidence            999999999999999999999999987653 47899999999999988764

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=99.97  E-value=5.1e-30  Score=243.51  Aligned_cols=195  Identities=32%  Similarity=0.489  Sum_probs=159.8

Q ss_pred             EEecCCCCCceec-ceecC-------CCCCc--e--EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhc
Q psy12528         11 ITLPARPGMERFS-FTVLG-------QVTVP--Q--ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLL   78 (258)
Q Consensus        11 ~~l~~~~g~~~~g-~~~yG-------~te~~--~--~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~   78 (258)
                      +.+.+.||++|.| +...+       ++..|  +  +.+.+.+ |+.++.+. |...+..+.+.-..+||++++...+.+
T Consensus       316 ~~i~d~~gqTEtg~~~~~~~~~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y  393 (528)
T COG0365         316 VWILDIYGQTETGMGFIAGRPPVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAY  393 (528)
T ss_pred             CCEeccccccccCccccCCCCCcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHH
Confidence            5666777777777 22222       22211  2  3566655 77766655 443333332222269999998776666


Q ss_pred             ccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEe
Q psy12528         79 HGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS  158 (258)
Q Consensus        79 ~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~  158 (258)
                      -         ++||.|||.+++|+||++||+||.||+||++|+++         .|.    |||++|.+||.|.||+|++
T Consensus       394 ~---------~~~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Ri---------g~~----EvE~~l~~hP~VaEaAvVg  451 (528)
T COG0365         394 F---------GRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRI---------GPL----EIESVLLAHPAVAEAAVVG  451 (528)
T ss_pred             h---------hceeecCceeEEccCCCEEEEeeccceEeccCeec---------cHH----HHHHHHHhCcceeeeEEEe
Confidence            4         23999999999999999999999999999999999         999    9999999999999999999


Q ss_pred             eeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      +||+..++.+++||++.++...+ ++.++|++++++.+.+++.|+.+.++++||+|.||||+|+.||+.+.+
T Consensus       452 ~pd~~kg~~v~afVvL~~g~~~~-~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~~  522 (528)
T COG0365         452 VPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHK  522 (528)
T ss_pred             ccCCCCCcEEEEEEEecCCCChH-HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHhh
Confidence            99999999999999999998777 899999999999998899999999999999999999999999999875

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=99.97  E-value=2.3e-29  Score=245.03  Aligned_cols=190  Identities=43%  Similarity=0.670  Sum_probs=159.6

Q ss_pred             CCcCC-CCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         43 GDDLN-LTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        43 g~~~~-~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      |..++ .+..|+..+.|+.+....||+++++.+...+..      ..+|||+|||++++|+||+++++||.||+||++|+
T Consensus       433 g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~------~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~  506 (625)
T TIGR02188       433 GNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFS------PFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGH  506 (625)
T ss_pred             CCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhc------cCCCEEECCceEEEcCCCcEEEEecccCEEEeCCE
Confidence            44444 344444334442222235999999877655431      24689999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCC
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM  201 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  201 (258)
                      ++         +|.    +||++|.+||+|.+++|++++++..++.++++|++.++...++++.++|+++++++++++++
T Consensus       507 ri---------~p~----eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~  573 (625)
T TIGR02188       507 RL---------GTA----EIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAK  573 (625)
T ss_pred             EE---------CHH----HHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCcc
Confidence            99         999    99999999999999999999998888999999999887766666778999999999999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHHHHHhcccc-cCCCCCCCchHHHHHHHH
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQ  251 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~  251 (258)
                      |..+++++++|+|.+||++|+.|++++.+... .+..++..+++.+.++.+
T Consensus       574 P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~  624 (625)
T TIGR02188       574 PDKIRFVPGLPKTRSGKIMRRLLRKIAAGEEEILGDTSTLEDPSVVEELIE  624 (625)
T ss_pred             CcEEEECCCCCCCCCccchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHh
Confidence            99999999999999999999999999887633 688999999999998754

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=99.97  E-value=3.5e-29  Score=244.18  Aligned_cols=199  Identities=26%  Similarity=0.352  Sum_probs=163.1

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccc-cccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMK-SLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~-~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      .|.++++|.+++.+..|+..+.|+.+.. ..+|+++++.....+-.     ...++||+|||+|++|+||+|+|+||.||
T Consensus       422 ~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~TGD~g~~d~dG~l~i~GR~dd  496 (628)
T TIGR02316       422 RVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWS-----HFKRPLYSSFDWGIRDEDGYTFILGRTDD  496 (628)
T ss_pred             EEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhh-----cCCCCEEECCceEEEcCCCcEEEEEcCcc
Confidence            4555555666666666665555552111 14889988766544321     12368999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCc-----cHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATF-----NQELVKQLK  189 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~l~  189 (258)
                      +||++|++|         +|.    |||++|.+||+|.+|+|++++++..++.+++||++.++...     ...+.++|+
T Consensus       497 ~ik~~G~rv---------~~~----eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~  563 (628)
T TIGR02316       497 VINVAGHRL---------GTR----EIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMM  563 (628)
T ss_pred             eEEeCCEEe---------CHH----HHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHH
Confidence            999999999         999    99999999999999999999999888999999998765432     224567899


Q ss_pred             HHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHc
Q psy12528        190 QQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNR  253 (258)
Q Consensus       190 ~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  253 (258)
                      ++++++|+++++|..+++++++|+|.|||++|+.|++++.+.. .++..+..+++.++++.+.+
T Consensus       564 ~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  626 (628)
T TIGR02316       564 DCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGRD-PGDLTTIDDPGALEQVRRAM  626 (628)
T ss_pred             HHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCCC-CCCcccccCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999987553 78899999999999987754

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=99.97  E-value=7e-29  Score=243.38  Aligned_cols=193  Identities=20%  Similarity=0.291  Sum_probs=162.6

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHh---hhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRA---QLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV  112 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~---~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~  112 (258)
                      .|.++ +|.++ .++.|+..+.|+.+....|||++++.+.   .+|.       +.+|||+|||++++|+||+|+|+||.
T Consensus       451 ~ivd~-~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~-------~~~g~~~tGDlg~~d~dG~l~i~GR~  521 (652)
T TIGR01217       451 QSWDP-EGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD-------TYPGVWRHGDWITLTPRGGIVIHGRS  521 (652)
T ss_pred             EEECC-CCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhc-------CCCCEEEcCCcEEECCCCcEEEEecc
Confidence            44443 35555 3555665555543222359999987553   3343       34689999999999999999999999


Q ss_pred             CCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHH
Q psy12528        113 DDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV  192 (258)
Q Consensus       113 ~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l  192 (258)
                      ||+||++|++|         +|.    |||++|.+||+|.+|+|++++++..++.+++||++.++...++++.++|++++
T Consensus       522 dd~I~~~G~ri---------~p~----EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~  588 (652)
T TIGR01217       522 DSTLNPQGVRM---------GSA----EIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTI  588 (652)
T ss_pred             cCeEecCCEEc---------CHH----HHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            99999999999         999    99999999999999999999998889999999999887766677778999999


Q ss_pred             HHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHH
Q psy12528        193 REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQ  251 (258)
Q Consensus       193 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~  251 (258)
                      +++|+++++|..++++++||+|++|||+|+.|++.+.+.. .+..+++.+++.++++.+
T Consensus       589 ~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~~-~~~~~~~~~~~~l~~~~~  646 (652)
T TIGR01217       589 RAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGTP-VDNPGAIDNPELLDLYEE  646 (652)
T ss_pred             HhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCCC-CCCcccccCHHHHHHHHH
Confidence            9999999999999999999999999999999999976553 788999999999998854

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=99.96  E-value=1.2e-28  Score=240.58  Aligned_cols=194  Identities=47%  Similarity=0.702  Sum_probs=163.3

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      |..++.+..|+..+.|+.+....||+++++.+...+..      ..+|||+|||++++|+||+++|+||.||+||++|++
T Consensus       442 g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~  515 (637)
T PRK00174        442 GNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFS------TFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHR  515 (637)
T ss_pred             CCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhc------CCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEE
Confidence            45555555555444443222235999999877654421      246899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      |         +|.    +||++|.+||+|.+|+|++.++...++.+++++++.++...++.+.++|+++++++++.++.|
T Consensus       516 v---------~p~----eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P  582 (637)
T PRK00174        516 L---------GTA----EIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKP  582 (637)
T ss_pred             E---------CHH----HHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCC
Confidence            9         999    999999999999999999999988889999999988776555566788999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccC
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      ..+++++++|+|++||++|+.|++.+.+....++.++..+++.+.++.+...+
T Consensus       583 ~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  635 (637)
T PRK00174        583 DVIQFAPGLPKTRSGKIMRRILRKIAEGEEILGDTSTLADPSVVEKLIEARQN  635 (637)
T ss_pred             CEEEEcCCCCCCCCcchHHHHHHHHHcCCCCCCCcccccCHHHHHHHHHHHhh
Confidence            99999999999999999999999998765446889999999999999887654

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=99.96  E-value=6.7e-29  Score=243.22  Aligned_cols=193  Identities=21%  Similarity=0.266  Sum_probs=159.6

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHh---hhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRA---QLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV  112 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~---~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~  112 (258)
                      .|.++ +|..+ .+..|+..+.|+.+....||+++++.++   .+|.       ..++||+|||++++|+||+|+|+||.
T Consensus       450 ~ivd~-~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~-------~~~g~~~TGDl~~~d~dG~l~i~GR~  520 (655)
T PRK03584        450 EAWDE-DGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFD-------TFPGVWRHGDWIEITEHGGVVIYGRS  520 (655)
T ss_pred             EEECC-CCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhc-------cCCCEeecCCeEEECCCCeEEEEeec
Confidence            44443 34444 3455555555542222359999987532   2332       23679999999999999999999999


Q ss_pred             CCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHH
Q psy12528        113 DDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV  192 (258)
Q Consensus       113 ~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l  192 (258)
                      ||+||++|++|         +|.    |||++|.+||.|.+|+|++.+++..++.+++||++.++...++++.++|++++
T Consensus       521 dd~Ik~~G~rI---------~p~----EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~  587 (655)
T PRK03584        521 DATLNRGGVRI---------GTA----EIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTI  587 (655)
T ss_pred             cCeeecCcEEE---------CHH----HHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHH
Confidence            99999999999         999    99999999999999999999998888999999999887666666778999999


Q ss_pred             HHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccC---CCCCCCchHHHHHHHH
Q psy12528        193 REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVG---DKSTLADEDVVDELFQ  251 (258)
Q Consensus       193 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~---~~~~~~~~~~l~~l~~  251 (258)
                      +++|+++++|..+++++++|+|.+|||+|+.|++++.+.. .+   +.++..+++.++++.+
T Consensus       588 ~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  648 (655)
T PRK03584        588 RTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGRP-VKKAVNRDALANPEALDWFAD  648 (655)
T ss_pred             HhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCCC-CCCCCCcccccCHHHHHHHHH
Confidence            9999999999999999999999999999999999987654 34   8999999999998855

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=99.96  E-value=3.3e-28  Score=237.05  Aligned_cols=199  Identities=27%  Similarity=0.433  Sum_probs=163.8

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeec---ccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEee
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRR---AMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGR  111 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~---~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR  111 (258)
                      +.|.++.+|..++.+..|+..+.|+.   .+  .+|+++++.....+-..     ..++||+|||++++|+||+++|+||
T Consensus       422 ~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~TGDl~~~d~dG~l~i~GR  494 (629)
T PRK10524        422 VKLLNEVTGEPCGPNEKGVLVIEGPLPPGCM--QTVWGDDDRFVKTYWSL-----FGRQVYSTFDWGIRDADGYYFILGR  494 (629)
T ss_pred             EEEEeCCCCCCCCCCCcEEEEEcCCCChhhc--CCccCChHHHHHhhhcc-----CCCcEEEcCCcEEEcCCCcEEEEEE
Confidence            35556546677766666665555542   22  38888887664433211     1468999999999999999999999


Q ss_pred             CCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCc-----cHHHHH
Q psy12528        112 VDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATF-----NQELVK  186 (258)
Q Consensus       112 ~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~  186 (258)
                      .||+||++|+++         +|.    +||++|.+||+|.+++|++.+++..++.+++++++..+...     .+.+.+
T Consensus       495 ~dd~i~~~G~ri---------~p~----eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~  561 (629)
T PRK10524        495 TDDVINVAGHRL---------GTR----EIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEK  561 (629)
T ss_pred             ecCeEEeCCEEe---------CHH----HHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHH
Confidence            999999999999         999    99999999999999999999998888899999998765432     234567


Q ss_pred             HHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHcc
Q psy12528        187 QLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRP  254 (258)
Q Consensus       187 ~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  254 (258)
                      +|++++++++++++.|..+++++++|+|++||++|+.|++++... ..++.++..+++.++++.+.+.
T Consensus       562 ~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  628 (629)
T PRK10524        562 EIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR-DPGDLTTIEDPAALQQIRQALE  628 (629)
T ss_pred             HHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC-CCCCcccccCHHHHHHHHHHhh
Confidence            899999999999999999999999999999999999999997754 4789999999999999987653

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=2e-28  Score=235.08  Aligned_cols=169  Identities=30%  Similarity=0.455  Sum_probs=149.2

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++.+..++ +..|+....|+.++.  ||+++|+.|+..|.        .+|||+|||+|++|++|+++|+||.+|
T Consensus       357 v~Ivd~~~~~~~p-g~vGei~irgp~v~~--GY~~~pe~t~~~f~--------~~gW~~TGDlg~~d~~G~l~i~gR~kd  425 (534)
T COG0318         357 VRIVDPDGGEVLP-GEVGEIWVRGPNVMK--GYWNRPEATAEAFD--------EDGWLRTGDLGYVDEDGYLYIVGRLKD  425 (534)
T ss_pred             EEEEeCCCCccCC-CCceEEEEECchhhh--hhcCChHHHHHhhc--------cCCeeeecceEEEcCCccEEEEeccce
Confidence            4666666554555 556666666666776  99999999999886        269999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC--ccHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT--FNQELVKQLKQQV  192 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~l  192 (258)
                      +|+++|.++         +|.    +||.++.+||.|.+++|++++++..++.+++++++.++..  .+   .+++.++|
T Consensus       426 ~I~~gG~ni---------~p~----eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~---~~~i~~~~  489 (534)
T COG0318         426 LIISGGENI---------YPE----EIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELT---AEELRAFL  489 (534)
T ss_pred             EEEeCCeEE---------CHH----HHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCC---HHHHHHHH
Confidence            999999999         999    9999999999999999999999999999999999987632  22   37899999


Q ss_pred             HHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        193 REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       193 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      +.+++.+++|+.+++++++|+|++||++|+.|++.+..
T Consensus       490 ~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         490 RKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             HhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence            99999999999999999999999999999999999877

>PLN02574 4-coumarate--CoA ligase-like

Probab=99.96  E-value=7.8e-28  Score=231.48  Aligned_cols=172  Identities=26%  Similarity=0.396  Sum_probs=151.7

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++++..++.+..|+..+.|+..+.  ||+++++.++..|.        .+|||+|||++++|++|+++++||.||
T Consensus       385 v~i~d~~~g~~~~~g~~Gei~v~g~~~~~--GY~~~~~~t~~~~~--------~~g~~~TGDlg~~~~~G~l~i~GR~~d  454 (560)
T PLN02574        385 AKVVDWSTGCLLPPGNCGELWIQGPGVMK--GYLNNPKATQSTID--------KDGWLRTGDIAYFDEDGYLYIVDRLKE  454 (560)
T ss_pred             EEEEeCCCCcCCCCCCCeEEEEECcchhh--hhcCChhHhhhhcc--------CCCCcccceEEEEECCCeEEEEecchh
Confidence            35677777888888887887777776666  99999999987774        468999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|+++         +|.    +||.+|.+||+|.+++|+++++...++.++++++...+...+.   +++.+++++
T Consensus       455 ~i~~~G~~v---------~~~----eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~  518 (560)
T PLN02574        455 IIKYKGFQI---------APA----DLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQ---EAVINYVAK  518 (560)
T ss_pred             heEECCEEE---------CHH----HHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCH---HHHHHHHHH
Confidence            999999999         999    9999999999999999999998887888889988776554443   678999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ++++++.|..+++++++|+|++||++|+.|++++.+..
T Consensus       519 ~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~  556 (560)
T PLN02574        519 QVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSV  556 (560)
T ss_pred             hccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhcc
Confidence            99999999999999999999999999999999986654

>PLN03051 acyl-activating enzyme; Provisional

Probab=99.95  E-value=5.1e-27  Score=223.00  Aligned_cols=182  Identities=23%  Similarity=0.298  Sum_probs=137.8

Q ss_pred             EEEeCCCCCcCCCCC--CCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCC
Q psy12528         36 SILEPRLGDDLNLTL--SMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVD  113 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~--~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~  113 (258)
                      .|.+ +++.+++.+.  .|+..+.|+..+...||++++ .++.++.+.+-+..+..+||+|||+|++|+||+|+|+||.|
T Consensus       303 ~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~  380 (499)
T PLN03051        303 VLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRAD  380 (499)
T ss_pred             EEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccC
Confidence            3444 3456665552  455555555433235899865 35444433222222456799999999999999999999999


Q ss_pred             CeeEECcEEEEeeecccccCCCCCHHHHHHHHHc-CCCcceEEEEeeeCCCCC-cEEEEEE---EeCCCC--CccHHHHH
Q psy12528        114 DMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLAS-HPDVSEAAVVSRPHPVKG-ECLYCFI---TPAGGA--TFNQELVK  186 (258)
Q Consensus       114 d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~-~~~v~~a~vv~~~~~~~~-~~~~~~v---~~~~~~--~~~~~~~~  186 (258)
                      |+||++|++|         +|.    |||+.|.+ ||+|.+|+|++++++..+ +.++++|   ++..+.  ...+++.+
T Consensus       381 d~ik~~G~~v---------~p~----EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~  447 (499)
T PLN03051        381 DTMNLGGIKT---------SSV----EIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQK  447 (499)
T ss_pred             CEEeeCCEEC---------CHH----HHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHH
Confidence            9999999999         999    99999996 999999999999998877 6788888   665543  23345556


Q ss_pred             HHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        187 QLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       187 ~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      .+++.++++++++..|..+.++++||+|++||++|++|++.+....
T Consensus       448 ~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  493 (499)
T PLN03051        448 KFQEAIQTNLNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKEL  493 (499)
T ss_pred             HHHHHHHhhcCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhh
Confidence            6777777888887777789999999999999999999998776554

>KOG1177|consensus

Probab=99.95  E-value=1.5e-27  Score=218.17  Aligned_cols=168  Identities=23%  Similarity=0.297  Sum_probs=148.8

Q ss_pred             CCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECc
Q psy12528         41 RLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSG  120 (258)
Q Consensus        41 ~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G  120 (258)
                      ..|..++.+..|+....|...|.  |||++++.|.....        .++||+|||.+.+|++|.++|+||.+|+|+.+|
T Consensus       422 ~~g~~v~~~~~Gel~iRGY~tMl--~Ywg~~~kT~eti~--------~drW~~TGDi~~m~enG~i~iVGRskdmI~rGG  491 (596)
T KOG1177|consen  422 KDGSEVPLGTKGELLIRGYSTML--GYWGEEEKTKETIG--------NDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGG  491 (596)
T ss_pred             CCCCccccCCCceEEEEechhhe--eecCCcccchhhcc--------cccceecCceEEEcCCCcEEEEEcccCeEEeCC
Confidence            55667777777776666666666  99999999987774        579999999999999999999999999999999


Q ss_pred             EEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCC
Q psy12528        121 HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFA  200 (258)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~  200 (258)
                      .+|         +|.    |+|+.|.+||.|.++.|++++|..-++.+||++-+.++..-. -..+.|+.+|+.++..|+
T Consensus       492 ENV---------yP~----ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~-~t~E~lKa~Ck~klaHFK  557 (596)
T KOG1177|consen  492 ENV---------YPT----ELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGK-TTAETLKAMCKGKLAHFK  557 (596)
T ss_pred             ccc---------ChH----HHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccc-ccHHHHHHHHhccccccc
Confidence            999         999    999999999999999999999999999999999998775521 123789999999999999


Q ss_pred             CCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        201 MPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       201 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +|++|++++++|+|.+|||+|-++|++.+.+-
T Consensus       558 iPky~vf~~~FPlT~tGKIqKFeir~~~k~~l  589 (596)
T KOG1177|consen  558 IPKYFVFVDEFPLTTTGKIQKFEIREMSKGHL  589 (596)
T ss_pred             CCcEEEEeccCcccccccchhHHHHHHHHhhc
Confidence            99999999999999999999999999998553

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=99.95  E-value=6.1e-27  Score=225.61  Aligned_cols=145  Identities=37%  Similarity=0.592  Sum_probs=133.4

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .||+++++.++..|.         +|||+|||++++|++|+++++||.||+|+++|.++         +|.    +||+.
T Consensus       416 ~GY~~~~~~~~~~~~---------~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i---------~p~----eIE~~  473 (570)
T PRK04319        416 RGIWNNPEKYESYFA---------GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERV---------GPF----EVESK  473 (570)
T ss_pred             hHhcCCHHHhhhhhc---------CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEE---------CHH----HHHHH
Confidence            599999999988774         68999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVL  224 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l  224 (258)
                      +.+||.|.+++|++.+++..++.+++++++.++....+++.++++++++++++.+++|..+++++++|+|++||++|++|
T Consensus       474 l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L  553 (570)
T PRK04319        474 LMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVL  553 (570)
T ss_pred             HhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHH
Confidence            99999999999999998888889999999887655555667899999999999999999999999999999999999999


Q ss_pred             HHHHhcc
Q psy12528        225 RKVAVND  231 (258)
Q Consensus       225 ~~~~~~~  231 (258)
                      ++++.+.
T Consensus       554 ~~~~~~~  560 (570)
T PRK04319        554 KAWELGL  560 (570)
T ss_pred             HHHHhCC
Confidence            9997543

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.8e-26  Score=220.80  Aligned_cols=143  Identities=28%  Similarity=0.455  Sum_probs=128.9

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .||+++++.+...|.         +|||+|||+++++++|+++++||.||+|+++|.++         +|.    +||+.
T Consensus       365 ~gy~~~~~~~~~~~~---------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v---------~p~----eIE~~  422 (529)
T PRK07867        365 EGYYNDPEADAERMR---------GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENL---------GTA----PIERI  422 (529)
T ss_pred             ccccCChHhhhhhhc---------CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEe---------CHH----HHHHH
Confidence            599999999887664         68999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh--cCCCCCCcEEEECCCCCCCCCCcccHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK--IGPFAMPDVIQHAPRLPKTRSGKIMRR  222 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~~~~~~~lP~t~~GKi~r~  222 (258)
                      |.+||+|.+++|++.+++..++.+++++++.++...+.   +++++.++++  ++.+++|..+++++++|+|.+||++|+
T Consensus       423 l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~  499 (529)
T PRK07867        423 LLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDP---DAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKR  499 (529)
T ss_pred             HHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCH---HHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHH
Confidence            99999999999999999888889999998876655553   5777788765  999999999999999999999999999


Q ss_pred             HHHHHHhccc
Q psy12528        223 VLRKVAVNDR  232 (258)
Q Consensus       223 ~l~~~~~~~~  232 (258)
                      +|+++.....
T Consensus       500 ~L~~~~~~~~  509 (529)
T PRK07867        500 QLSAEGVDCA  509 (529)
T ss_pred             HHHHhcCCCC
Confidence            9999886554

>PLN02246 4-coumarate--CoA ligase

Probab=99.95  E-value=1.7e-26  Score=220.71  Aligned_cols=169  Identities=25%  Similarity=0.396  Sum_probs=146.5

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+++++..++.+..|+..+.|+..+.  ||+++++.++..+.        .++||+|||+++++++|+++++||.||+
T Consensus       368 ~i~d~~~~~~~~~g~~Gel~v~g~~~~~--GY~~~~~~~~~~~~--------~~~~~~TGD~~~~~~~g~l~~~GR~dd~  437 (537)
T PLN02246        368 KIVDPETGASLPRNQPGEICIRGPQIMK--GYLNDPEATANTID--------KDGWLHTGDIGYIDDDDELFIVDRLKEL  437 (537)
T ss_pred             EEecCCCCCcCCCCCceEEEEECCchhc--cccCCchhhhhccc--------CCCCeeecceEEEeCCCeEEEEecccce
Confidence            4555556677777777776677766665  99999998877664        4689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      ||++|.++         +|.    +||+.+.+||+|.+++|+++++...++.++++++..++...+.   ++++++++++
T Consensus       438 i~~~G~~i---------~~~----eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~  501 (537)
T PLN02246        438 IKYKGFQV---------APA----ELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITE---DEIKQFVAKQ  501 (537)
T ss_pred             EEECCEEE---------CcH----HHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCH---HHHHHHHHhh
Confidence            99999999         999    9999999999999999999988877888888888776654443   6899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      +++++.|..++.++++|+|++||++|+.|++++.+
T Consensus       502 l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        502 VVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             CcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            99999999999999999999999999999998753

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=1.9e-26  Score=221.77  Aligned_cols=169  Identities=26%  Similarity=0.436  Sum_probs=143.8

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.++ ++..++.+..|+..+.|...+.  ||+++++.++..|.        .+|||+|||++++|++|++++.||.+|+
T Consensus       390 ~i~d~-~~~~~~~g~~Gel~v~g~~~~~--gY~~~~~~t~~~~~--------~~g~~~TGDlg~~~~~G~l~i~GR~~d~  458 (562)
T PRK05677        390 KVIDD-DGNELPLGEVGELCVKGPQVMK--GYWQRPEATDEILD--------SDGWLKTGDIALIQEDGYMRIVDRKKDM  458 (562)
T ss_pred             EEECC-CCCCCCCCCCeEEEEecCccch--hhcCCchhhhhccC--------CCCcccccceEEECCCCcEEEEecCcCe
Confidence            44443 3566666666666666655554  99999999988774        4689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      |+++|.++         +|.    +||+.|.+||+|.+++|+++++...++.+++++++..+...+.   +.++++++++
T Consensus       459 i~~~G~~i---------~p~----eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~---~~l~~~~~~~  522 (562)
T PRK05677        459 ILVSGFNV---------YPN----ELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTK---EQVMEHMRAN  522 (562)
T ss_pred             EEeCCEEE---------CHH----HHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCH---HHHHHHHHHh
Confidence            99999999         999    9999999999999999999998887888888888765544443   6889999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++++++|..+++++++|+|++||++|++|++.+..+
T Consensus       523 l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        523 LTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKK  558 (562)
T ss_pred             hhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHh
Confidence            999999999999999999999999999999876544

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.94  E-value=2.3e-26  Score=222.44  Aligned_cols=155  Identities=26%  Similarity=0.368  Sum_probs=134.1

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSY  131 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~  131 (258)
                      |+..+.|+..+  .||+++++.+...|.         +|||+|||+|++|+||+|+++||.||+|+++|.++        
T Consensus       393 GEl~v~g~~~~--~GY~~~~~~t~~~f~---------~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v--------  453 (579)
T PLN03102        393 GEIVIKGSSIM--KGYLKNPKATSEAFK---------HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENI--------  453 (579)
T ss_pred             eEEEEECcchh--hhhcCChhhhHhhhc---------cCceecCceEEEcCCCeEEEEeccCcEEEECCEEE--------
Confidence            44444444444  499999999988874         58999999999999999999999999999999999        


Q ss_pred             cCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHH-------HHHHHHHHHHHhcCCCCCCcE
Q psy12528        132 CSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQE-------LVKQLKQQVREKIGPFAMPDV  204 (258)
Q Consensus       132 ~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~l~~~l~~~l~~~~~p~~  204 (258)
                       +|.    +||+.|.+||.|.+++|++++++..++.++++|.+..+....+.       ...+++++++++|+.+++|..
T Consensus       454 -~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~  528 (579)
T PLN03102        454 -SSV----EVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRK  528 (579)
T ss_pred             -CHH----HHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeE
Confidence             999    99999999999999999999998888899999987755332110       135789999999999999999


Q ss_pred             EEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        205 IQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       205 ~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      +++++++|+|++||++|++|++++.+
T Consensus       529 i~~~~~~P~t~~gKi~r~~L~~~~~~  554 (579)
T PLN03102        529 VVFLQELPKNGNGKILKPKLRDIAKG  554 (579)
T ss_pred             EEEcccCCCCCcccccHHHHHHHHHH
Confidence            99999999999999999999998755

>PRK06060 acyl-CoA synthetase; Validated

Probab=99.94  E-value=1.7e-26  Score=228.05  Aligned_cols=161  Identities=24%  Similarity=0.333  Sum_probs=135.7

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|...+.  ||+|+++.+   +        ..++||+|||++++|+||+++++||.||+||++|++
T Consensus       331 g~~~~~g~~GEl~i~g~~v~~--GY~~~~~~~---~--------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~  397 (705)
T PRK06060        331 GTTAGPGVEGDLWVRGPAIAK--GYWNRPDSP---V--------ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVN  397 (705)
T ss_pred             CCCCCCCCceEEEEccchhhh--hhhCCCccc---c--------cCCCcEECCeeEEECCCceEEEecccCceEEECCEE
Confidence            444555555555555555444  899998753   1        247999999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      |         +|.    +||+.|.+|+.|.+++|++.++...++.++++++.......+.....+++++++++|+.+++|
T Consensus       398 v---------~~~----eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P  464 (705)
T PRK06060        398 V---------DPR----EVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVP  464 (705)
T ss_pred             E---------CHH----HHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCC
Confidence            9         999    999999999999999999999887778899999877655444445568899999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHh
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAV  229 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~  229 (258)
                      ..+++++++|+|.+||++|++|++.+.
T Consensus       465 ~~i~~v~~iP~t~~GKidr~~L~~~~~  491 (705)
T PRK06060        465 HRFAVVDRLPRTPNGKLVRGALRKQSP  491 (705)
T ss_pred             cEEEEeecCCCCcchhhHHHHHHhhcc
Confidence            999999999999999999999998753

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=2.2e-26  Score=224.51  Aligned_cols=177  Identities=20%  Similarity=0.216  Sum_probs=140.7

Q ss_pred             EEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcC---------cCCCCeeecCceEEEccCCcEE
Q psy12528         37 ILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFS---------FTTNNSDLLLSSARRDEDGYLW  107 (258)
Q Consensus        37 i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~---------~~~~~w~~TGDl~~~d~~G~l~  107 (258)
                      |++++++.+++.++.|+....|+..+.  ||+++++.++..|.......         ...+|||+|||+|+++ ||+|+
T Consensus       404 ivd~~~g~~~~~ge~GEl~v~gp~v~~--GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~  480 (631)
T PRK07769        404 IVDPETASELPDGQIGEIWLHGNNIGT--GYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELY  480 (631)
T ss_pred             EEcCCCCcCCCCCCEEEEEecCCCccc--cccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEE
Confidence            444455666776777777777776666  99999999999886321100         1235899999999995 99999


Q ss_pred             EEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHc-CCCcce--EEEEeeeC-------------------CCCC
Q psy12528        108 VTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLAS-HPDVSE--AAVVSRPH-------------------PVKG  165 (258)
Q Consensus       108 ~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~-~~~v~~--a~vv~~~~-------------------~~~~  165 (258)
                      |+||.||+||++|++|         +|.    |||+.|.+ ||.|.+  ++|+++++                   +..+
T Consensus       481 i~GR~~d~Ik~~G~~V---------~p~----eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g  547 (631)
T PRK07769        481 ITGRVKDLVIIDGRNH---------YPQ----DLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS  547 (631)
T ss_pred             EEcccccEEEECCeee---------CHH----HHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCC
Confidence            9999999999999999         999    99999996 899997  88998888                   4467


Q ss_pred             cEEEEEEEeCCCC-CccHHHHHHHHHHHHHhcCC-CC-CCcEEEECC--CCCCCCCCcccHHHHHHHHhccc
Q psy12528        166 ECLYCFITPAGGA-TFNQELVKQLKQQVREKIGP-FA-MPDVIQHAP--RLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       166 ~~~~~~v~~~~~~-~~~~~~~~~l~~~l~~~l~~-~~-~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +.+++++++.++. ..+   .++|.++++++++. ++ .|..+++++  +||+|++|||+|++|++.+.+..
T Consensus       548 e~~~a~v~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~~  616 (631)
T PRK07769        548 EQLVIVAERAPGAHKLD---PQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDGS  616 (631)
T ss_pred             ccEEEEEEecCcccccc---HHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcCC
Confidence            8899999887653 223   26788888888875 55 488888886  69999999999999999987654

>PRK06839 acyl-CoA synthetase; Validated

Probab=99.94  E-value=5.8e-26  Score=213.94  Aligned_cols=167  Identities=23%  Similarity=0.351  Sum_probs=142.7

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+++ +..++.+..|+..+.|+..+  .||+++++.++..+.         +|||+|||++++|++|++++.||.||+
T Consensus       329 ~i~d~~-~~~~~~g~~Gel~v~~~~~~--~gy~~~~~~~~~~~~---------~g~~~TGDl~~~~~~g~~~~~GR~~d~  396 (496)
T PRK06839        329 ELIDEN-KNKVEVGEVGELLIRGPNVM--KEYWNRPDATEETIQ---------DGWLCTGDLARVDEDGFVYIVGRKKEM  396 (496)
T ss_pred             EEECCC-cCCCCCCCceEEEEECCCcc--hhhcCChHHHHHHHc---------CCCeeecceEEEcCCCcEEEeccccce
Confidence            444433 34455566666655555554  499999999887764         689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      |+++|.++         +|.    +||+.|.++|+|.++++++.++...++.++++++..++...+.   +++++++++.
T Consensus       397 i~~~G~~v---------~p~----~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~---~~l~~~~~~~  460 (496)
T PRK06839        397 IISGGENI---------YPL----EVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIE---KDVIEHCRLF  460 (496)
T ss_pred             EEECCEEE---------CHH----HHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCH---HHHHHHHHhh
Confidence            99999999         999    9999999999999999999998888889999999887655543   6899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      ++.+++|..++.++++|+|.+||++|++|+++.++
T Consensus       461 l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        461 LAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             CcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence            99999999999999999999999999999988754

>PRK07788 acyl-CoA synthetase; Validated

Probab=99.94  E-value=2.2e-26  Score=220.55  Aligned_cols=155  Identities=28%  Similarity=0.425  Sum_probs=131.8

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|..++  .||++++...            ..+|||+|||++++|++|+++++||.||+||++|.+
T Consensus       394 ~~~~~~g~~Gel~v~g~~~~--~gY~~~~~~~------------~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~  459 (549)
T PRK07788        394 GNEVPRGVVGRIFVGNGFPF--EGYTDGRDKQ------------IIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGEN  459 (549)
T ss_pred             cCCCCCCCeEEEEEeCCCcc--ccccCCCccc------------ccCCceecCceEEEcCCCCEEEeccCcceEEECCEE
Confidence            45555555555555554444  4898886541            136899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      |         +|.    +||+.|.+||+|.+++|++.++...++.++++|++.++...+.   ++++++++++++.+++|
T Consensus       460 v---------~p~----eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~~~~~l~~~~~P  523 (549)
T PRK07788        460 V---------FPA----EVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDE---DAIKDYVRDNLARYKVP  523 (549)
T ss_pred             E---------CHH----HHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCH---HHHHHHHHHhhhcCCCC
Confidence            9         999    9999999999999999999998888889999999877655453   68999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHH
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKV  227 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~  227 (258)
                      ..+++++++|+|++||++|+.|+++
T Consensus       524 ~~i~~v~~lP~t~~GKi~r~~L~~~  548 (549)
T PRK07788        524 RDVVFLDELPRNPTGKVLKRELREM  548 (549)
T ss_pred             cEEEEeCCCCCCCCcCEeHHHhhcc
Confidence            9999999999999999999999753

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=99.94  E-value=1.5e-26  Score=222.69  Aligned_cols=147  Identities=24%  Similarity=0.372  Sum_probs=127.9

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .||+++++.++..+.        .+|||+|||++++|++|+++|+||.||+||++|+++         +|.    +||+.
T Consensus       397 ~GY~~~~~~t~~~~~--------~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v---------~p~----eIE~~  455 (563)
T PLN02860        397 LGYWGQNSETASVLS--------NDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENV---------YPE----EVEAV  455 (563)
T ss_pred             ccccCCccccchhcc--------CCCeEEccceEEEcCCCCEEEeecccceeEECCEEc---------cHH----HHHHH
Confidence            599999999887764        479999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCc-----------cHHHHHHHHHHHHH-hcCCCCCCcEEEEC-CCC
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATF-----------NQELVKQLKQQVRE-KIGPFAMPDVIQHA-PRL  211 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~l~~~l~~-~l~~~~~p~~~~~~-~~l  211 (258)
                      +.+||+|.+++|++.++...++.+++++++.++...           .....+.+++++++ +|+++++|..++++ +++
T Consensus       456 l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~l  535 (563)
T PLN02860        456 LSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPF  535 (563)
T ss_pred             HHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCC
Confidence            999999999999999998888899999998765210           01113578888988 49999999998775 679


Q ss_pred             CCCCCCcccHHHHHHHHhccc
Q psy12528        212 PKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       212 P~t~~GKi~r~~l~~~~~~~~  232 (258)
                      |+|++|||+|++|++++.+..
T Consensus       536 P~t~~GKi~r~~L~~~~~~~~  556 (563)
T PLN02860        536 PLTTTGKIRRDEVRREVLSHL  556 (563)
T ss_pred             CCCcccchhHHHHHHHHHHHH
Confidence            999999999999999987664

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.94  E-value=3.2e-26  Score=208.32  Aligned_cols=177  Identities=23%  Similarity=0.271  Sum_probs=142.1

Q ss_pred             ceecCCCCCceEE--EEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEc
Q psy12528         24 FTVLGQVTVPQIS--ILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRD  101 (258)
Q Consensus        24 ~~~yG~te~~~~~--i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d  101 (258)
                      ++.||+||++..+  ...|..+..+.+ ..|+....|+..+.  ||+++++..  .|        ..+|||+|||++++ 
T Consensus       179 ~~~YG~TE~~~~~~~~G~~~~g~~v~i-~~Gei~v~g~~~~~--gY~~~~~~~--~~--------~~~g~~~TGDl~~~-  244 (358)
T PRK07824        179 VRTYGMSETSGGCVYDGVPLDGVRVRV-EDGRIALGGPTLAK--GYRNPVDPD--PF--------AEPGWFRTDDLGAL-  244 (358)
T ss_pred             EecccCCccCCCcCcCceeCCCCEEEe-cCCEEEEecCcccc--ccCCCcccc--cc--------cCCCceecccEEEE-
Confidence            5789999976432  222333333332 23455555655555  899887632  22        24679999999999 


Q ss_pred             cCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc
Q psy12528        102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN  181 (258)
Q Consensus       102 ~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~  181 (258)
                      ++|.++++||.||+||++|.++         +|.    +||+.|.+||+|.+|+|++.+++..++.++++++........
T Consensus       245 ~~g~l~i~GR~~d~i~~~G~~v---------~p~----eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~  311 (358)
T PRK07824        245 DDGVLTVLGRADDAISTGGLTV---------LPQ----VVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPT  311 (358)
T ss_pred             eCCEEEEEeccCCeEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcC
Confidence            8999999999999999999999         999    999999999999999999999888888888988776544333


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        182 QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       182 ~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                         .+++++.++++++.+++|..+++++++|+|.+||++|++|++++.+
T Consensus       312 ---~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        312 ---LEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             ---HHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence               3689999999999999999999999999999999999999998864

>PRK13390 acyl-CoA synthetase; Provisional

Probab=99.94  E-value=3.8e-26  Score=216.22  Aligned_cols=162  Identities=26%  Similarity=0.390  Sum_probs=136.8

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|...+  .||+++++.++..+..      ..++|++|||++++|++|++++.||.|++||++|++
T Consensus       340 ~~~~~~g~~Gel~v~~~~~~--~gy~~~~~~t~~~~~~------~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~  411 (501)
T PRK13390        340 GNELPAGRIGTVYFERDRLP--FRYLNDPEKTAAAQHP------AHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVN  411 (501)
T ss_pred             CCCCCCCCceEEEEecCCcc--ccccCChhhhHHhhcc------CCCceEEcCceEEECCCCeEEEeeccccceeECCee
Confidence            34444455455444444444  4999999999887752      236899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||+.|.+||+|.+++++++++...++.+++++.+..+....+++.+++.++++++++.+++|
T Consensus       412 v---------~p~----eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P  478 (501)
T PRK13390        412 I---------YPQ----ETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAP  478 (501)
T ss_pred             e---------CHH----HHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCC
Confidence            9         999    999999999999999999999888788999998887655444455678999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHH
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLR  225 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~  225 (258)
                      ..+++++++|+|++||++|++|+
T Consensus       479 ~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        479 RSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             cEEEEeccCCCCCccceehhhcC
Confidence            99999999999999999999874

>PRK12467 peptide synthase; Provisional

Probab=99.94  E-value=1.9e-26  Score=259.78  Aligned_cols=195  Identities=18%  Similarity=0.240  Sum_probs=165.7

Q ss_pred             CCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECc
Q psy12528         41 RLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSG  120 (258)
Q Consensus        41 ~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G  120 (258)
                      +.+..++.+..|+..+.|..++.  ||+|+++.|+..|... +|...+.+||+|||+|++++||+|+++||.|++||++|
T Consensus      3425 ~~~~~vp~G~~GEL~i~G~~v~~--GY~~~~~~T~~~F~~~-p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G 3501 (3956)
T PRK12467       3425 GQLNPVPVGVAGELYIGGVGLAR--GYHQRPSLTAERFVAD-PFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRG 3501 (3956)
T ss_pred             CCCCCCCCCCCceEEEcchhhhh--hccCCcccchhhccCC-CCCCCCceeeccchhheecCCCcEEEeccccceEeece
Confidence            34667777777777777777776  9999999999999743 34334678999999999999999999999999999999


Q ss_pred             EEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCC
Q psy12528        121 HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFA  200 (258)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~  200 (258)
                      ++|         +|.    |||++|.+||+|.+|+|++.++ ..++.++++++........   .+.+++.++++|+.|+
T Consensus      3502 ~rI---------e~~----EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~~---~~~l~~~l~~~Lp~y~ 3564 (3956)
T PRK12467       3502 FRI---------ELG----EIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGDW---RETLRDHLAASLPDYM 3564 (3956)
T ss_pred             Eee---------cHH----HHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCccc---HHHHHHHHhccCChhh
Confidence            999         999    9999999999999999998754 3467899999876543332   3689999999999999


Q ss_pred             CCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccC
Q psy12528        201 MPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       201 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      +|..++.++.+|+|++||++|++|++...+.......+.+..|+.+.++|++++.
T Consensus      3565 vP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~ 3619 (3956)
T PRK12467       3565 VPAQLLVLAAMPLGPNGKVDRKALPDPDAKGSREYVAPRSEVEQQLAAIWADVLG 3619 (3956)
T ss_pred             CCCeeeeeccCCCCCCCccchhhcCCCCccccccccCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999876554334567888999999999999886

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.94  E-value=2.1e-26  Score=216.83  Aligned_cols=127  Identities=27%  Similarity=0.446  Sum_probs=116.8

Q ss_pred             CCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcE
Q psy12528         88 TNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGEC  167 (258)
Q Consensus        88 ~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~  167 (258)
                      .++||+|||++++|+||+|++.||.||+||++|.+|         +|.    +||+.|.+||+|.+|+|++.+++..++.
T Consensus       322 ~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V---------~p~----eIE~~l~~~p~V~~a~V~g~~~~~~g~~  388 (452)
T PRK07445        322 SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENV---------YPA----EVEAAILATGLVQDVCVLGLPDPHWGEV  388 (452)
T ss_pred             CCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEeccCcCCCcE
Confidence            468999999999999999999999999999999999         999    9999999999999999999998888888


Q ss_pred             EEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        168 LYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       168 ~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++++++..++. .+   .++++++++++++.+++|..+++++++|+|++||++|++|++++.++
T Consensus       389 ~~a~vv~~~~~-~~---~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  448 (452)
T PRK07445        389 VTAIYVPKDPS-IS---LEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQR  448 (452)
T ss_pred             EEEEEEeCCCC-CC---HHHHHHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHh
Confidence            99998876553 22   26899999999999999999999999999999999999999988765

>PRK07529 AMP-binding domain protein; Validated

Probab=99.94  E-value=6.1e-26  Score=221.75  Aligned_cols=161  Identities=28%  Similarity=0.425  Sum_probs=137.0

Q ss_pred             CcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEE
Q psy12528         44 DDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLM  123 (258)
Q Consensus        44 ~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v  123 (258)
                      .+++.+..|+..+.|+..+.  ||++++. +...|.        .+|||+|||++++|+||+++++||.||+||++|+++
T Consensus       410 ~~~~~g~~Gel~v~gp~v~~--GY~~~~~-~~~~~~--------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i  478 (632)
T PRK07529        410 RDCAVDEVGVLCIAGPNVFS--GYLEAAH-NKGLWL--------EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNI  478 (632)
T ss_pred             ccCCCCCceEEEEECCCccc--cccCCcc-cccccc--------CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEE
Confidence            45555666666666666665  8988754 333332        479999999999999999999999999999999999


Q ss_pred             EeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcC-CCCCC
Q psy12528        124 TVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIG-PFAMP  202 (258)
Q Consensus       124 ~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~p  202 (258)
                               +|.    +||+.|.+||+|.+|+|++.++...++.++++|++.++...+.   +++.++++++++ .+++|
T Consensus       479 ---------~p~----eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~---~~l~~~~~~~l~~~~~~P  542 (632)
T PRK07529        479 ---------DPA----AIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATE---AELLAFARDHIAERAAVP  542 (632)
T ss_pred             ---------CHH----HHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCH---HHHHHHHHHhcchhccCC
Confidence                     999    9999999999999999999999888899999999887765554   578899999986 57999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ..+++++++|+|.+||++|+.|++.+...
T Consensus       543 ~~i~~v~~lP~t~~GKi~r~~Lr~~~~~~  571 (632)
T PRK07529        543 KHVRILDALPKTAVGKIFKPALRRDAIRR  571 (632)
T ss_pred             cEEEEecCCCCCCCCcccHHHHHHHHHHH
Confidence            99999999999999999999999988553

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.94  E-value=5.7e-26  Score=214.30  Aligned_cols=160  Identities=21%  Similarity=0.318  Sum_probs=136.7

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      |..++.+..|+....|+..+.  ||+++++.+...+         .+|||+|||++++|++|+++++||.+|+||++|.+
T Consensus       325 g~~~~~g~~Gel~v~~~~~~~--gy~~~~~~~~~~~---------~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~  393 (487)
T PRK07638        325 GEEVQKGEIGTVYVKSPQFFM--GYIIGGVLARELN---------ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGIN  393 (487)
T ss_pred             CCCCCCCCCeEEEEeccccee--eecCCHHHHhhhc---------cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEE
Confidence            555555555555555555444  9999998876544         36899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||+.+.+||+|.+++|++.+++..++.+++++...    ..   .++++++++++++.+++|
T Consensus       394 v---------~~~----eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~----~~---~~~l~~~~~~~l~~~~~p  453 (487)
T PRK07638        394 I---------FPE----EIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGS----AT---KQQLKSFCLQRLSSFKIP  453 (487)
T ss_pred             E---------CHH----HHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECC----CC---HHHHHHHHHHHhhcccCC
Confidence            9         999    999999999999999999999887788888887642    12   268999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE  233 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~  233 (258)
                      ..+++++++|+|++||++|++|++++.+.++
T Consensus       454 ~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~  484 (487)
T PRK07638        454 KEWHFVDEIPYTNSGKIARMEAKSWIENQEK  484 (487)
T ss_pred             cEEEEecccCCCCcccccHHHHHHHHhcccc
Confidence            9999999999999999999999999888764

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.94  E-value=5.6e-26  Score=238.75  Aligned_cols=198  Identities=17%  Similarity=0.251  Sum_probs=154.4

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCC-------------------C-cCcCCCCeeecCceEEEcc
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHN-------------------N-FSFTTNNSDLLLSSARRDE  102 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~-------------------~-~~~~~~~w~~TGDl~~~d~  102 (258)
                      +..++.+..|+..+.|+.++.  ||+|+|+.|++.|....                   . +....++||+|||+|++++
T Consensus       613 ~~~~~~G~~GEL~i~G~~v~~--GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~  690 (1389)
T TIGR03443       613 TQTCGVGEVGEIYVRAGGLAE--GYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLP  690 (1389)
T ss_pred             CCcCCCCCceEEEecccccch--hcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcC
Confidence            345666666776666766665  99999999999885321                   0 0112468999999999999


Q ss_pred             CCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC-Cc-
Q psy12528        103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA-TF-  180 (258)
Q Consensus       103 ~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~-~~-  180 (258)
                      ||.|+|+||.||+||++|++|         +|.    |||.+|.+||.|.+++|+..++...+..+++++++.... .. 
T Consensus       691 dG~l~~~GR~dd~Iki~G~rI---------~p~----eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~  757 (1389)
T TIGR03443       691 DGNVECCGRADDQVKIRGFRI---------ELG----EIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELE  757 (1389)
T ss_pred             CCCEEEecccCCEEEeCcEEe---------cHH----HHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccCcccccc
Confidence            999999999999999999999         999    999999999999999999888777778899998876221 10 


Q ss_pred             ---------------------cHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc-------
Q psy12528        181 ---------------------NQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-------  232 (258)
Q Consensus       181 ---------------------~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~-------  232 (258)
                                           .....+.++++++++|+.|++|..++.++++|+|++|||+|++|++....+.       
T Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~  837 (1389)
T TIGR03443       758 EFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAAVAKNR  837 (1389)
T ss_pred             ccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCchhhhhhhhccc
Confidence                                 0123467899999999999999999999999999999999999964322110       


Q ss_pred             --ccCCCCCCCchHHHHHHHHHccC
Q psy12528        233 --EVGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       233 --~~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                        .....+....++.+.++|+.++.
T Consensus       838 ~~~~~~~~~~~~~~~l~~~~~~vl~  862 (1389)
T TIGR03443       838 SASAADEEFTETEREIRDLWLELLP  862 (1389)
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhC
Confidence              01223445567789999988874

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=7.7e-26  Score=216.09  Aligned_cols=173  Identities=25%  Similarity=0.401  Sum_probs=146.6

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+++++..++.+..|+..+.|+..+.  ||+++++.+...|...     ..++||+|||++++|++|+++++||.||+
T Consensus       369 ~i~d~~~~~~~~~g~~Gel~v~g~~~~~--gY~~~~~~t~~~f~~~-----~~~~~~~TGDl~~~~~~g~l~~~GR~~d~  441 (546)
T PRK08314        369 RVIDPETLEELPPGEVGEIVVHGPQVFK--GYWNRPEATAEAFIEI-----DGKRFFRTGDLGRMDEEGYFFITDRLKRM  441 (546)
T ss_pred             EEEeCCCCcCCCCCCceEEEEECCchhc--cccCChhHhhhhhhhc-----CCCceEecCCEEEEcCCCcEEEEecchhh
Confidence            4566666777777776666666655555  9999999988777521     23579999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC--ccHHHHHHHHHHHH
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT--FNQELVKQLKQQVR  193 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~l~  193 (258)
                      |+++|.++         +|.    +||+.+.++|+|.+++|++.++...++.+++++++.++..  .+   .++++++++
T Consensus       442 i~~~G~~v---------~~~----eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~---~~~l~~~~~  505 (546)
T PRK08314        442 INASGFKV---------WPA----EVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTT---EEEIIAWAR  505 (546)
T ss_pred             EEeCCEEE---------CHH----HHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCC---HHHHHHHHH
Confidence            99999999         999    9999999999999999999998877888999998876532  22   268999999


Q ss_pred             HhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        194 EKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       194 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++++++++|..+++++++|+|.+||++|+.|++...+.
T Consensus       506 ~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~~~  543 (546)
T PRK08314        506 EHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEKAR  543 (546)
T ss_pred             HhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHhhh
Confidence            99999999999999999999999999999998876554

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.94  E-value=1e-25  Score=216.08  Aligned_cols=165  Identities=23%  Similarity=0.317  Sum_probs=140.9

Q ss_pred             CCcCCCCCCCCCeEEeeccc-ccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAM-KSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~-~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      +..++.+..|+..+.|..+. ...||+++++.+...|.         ++||+|||++++++||+++++||.+|+|+++|.
T Consensus       361 ~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~---------~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~  431 (542)
T PRK06155        361 DQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWR---------NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGE  431 (542)
T ss_pred             CCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhc---------CCcEeccceEEEcCCceEEEEecCCCEEEeCCE
Confidence            55566565566555555321 22499999999887774         689999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCC
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM  201 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  201 (258)
                      ++         +|.    +||+.+.+||+|.+++|+++++...++.+.+++++..+...+.   .+++++++++++.+++
T Consensus       432 ~v---------~p~----eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~l~~~~~  495 (542)
T PRK06155        432 NI---------SSF----EVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEP---VALVRHCEPRLAYFAV  495 (542)
T ss_pred             EE---------CHH----HHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCH---HHHHHHHHhhCcCccC
Confidence            99         999    9999999999999999999998877788888888776655543   6899999999999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      |..+.+++++|+|.+||++|++|++++...+
T Consensus       496 P~~i~~~~~iP~t~~GKi~r~~l~~~~~~~~  526 (542)
T PRK06155        496 PRYVEFVAALPKTENGKVQKFVLREQGVTAD  526 (542)
T ss_pred             CcEEEEeccCCCCcccceeHHHHHhhccCCc
Confidence            9999999999999999999999999886554

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=99.94  E-value=5.4e-26  Score=217.81  Aligned_cols=171  Identities=23%  Similarity=0.356  Sum_probs=146.6

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+++.+..++.+..|+....|+..+.  ||+++++.++..+.        .+|||+|||++++++||+++++||.+|+
T Consensus       373 ~i~d~~~~~~~p~g~~Gel~v~g~~~~~--gy~~~~~~~~~~~~--------~~g~~~TGD~~~~~~dG~l~~~GR~~d~  442 (546)
T PLN02330        373 KFIDPDTGRSLPKNTPGELCVRSQCVMQ--GYYNNKEETDRTID--------EDGWLHTGDIGYIDDDGDIFIVDRIKEL  442 (546)
T ss_pred             EEEeCCCCccCCCCCceEEEEecchhhh--hhccCccchhhhcc--------CCCceecccEEEEeCCCcEEEEechHHh
Confidence            4455556666666666666666665555  99999998887664        4789999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      |+++|+++         +|.    +||+++.+++.|.+++|+++++...++.+++++++.++...+.   +++++.++++
T Consensus       443 i~~~G~~v---------~~~----~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~~  506 (546)
T PLN02330        443 IKYKGFQV---------APA----ELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESE---EDILNFVAAN  506 (546)
T ss_pred             hhcCCEEE---------CHH----HHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCCH---HHHHHHHHHh
Confidence            99999999         999    9999999999999999999998888888889998876544432   6789999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ++.++.|..++.++++|+|.+||++|++|++++....
T Consensus       507 l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~~  543 (546)
T PLN02330        507 VAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSIN  543 (546)
T ss_pred             cccccCceEEEEeccCCCCCCcceeHHHHHHHHHhhh
Confidence            9999999999999999999999999999999986653

>PRK05691 peptide synthase; Validated

Probab=99.94  E-value=6.6e-26  Score=257.02  Aligned_cols=196  Identities=21%  Similarity=0.266  Sum_probs=160.8

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|..++.  ||+|+|+.|+..|..++ +....++||+|||++++++||.|+++||.|++||++|++
T Consensus      4058 ~~~~p~g~~GEL~i~G~~v~~--GY~~~~~~t~~~f~~~p-~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~r 4134 (4334)
T PRK05691       4058 LELVPLGAVGELCVAGTGVGR--GYVGDPLRTALAFVPHP-FGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYR 4134 (4334)
T ss_pred             CCCCCCCCceEEEEecccccc--cccCCcccchhhcccCC-CCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEE
Confidence            344555666666666666655  99999999999997443 333457899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      |         .+.    |||+.|.++|+|.+|+|+.... ..++.++++++............+.+++.++++||.||+|
T Consensus      4135 i---------el~----eIE~~l~~~~~v~~a~v~~~~~-~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP 4200 (4334)
T PRK05691       4135 I---------ELG----EIEARLHEQAEVREAAVAVQEG-VNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVP 4200 (4334)
T ss_pred             e---------cHH----HHHHHHHhCCCccEEEEEEecC-CCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcC
Confidence            9         999    9999999999999988876543 4467888998877655444455678999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcccc--cCCCCCCCchHHHHHHHHHccC
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE--VGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      ..++.++++|+|+||||+|++|++...+...  ....|.+..|..+.++|++++.
T Consensus      4201 ~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~ 4255 (4334)
T PRK05691       4201 LHWLWLDRLPLNANGKLDRKALPALDIGQLQSQAYLAPRNELEQTLATIWADVLK 4255 (4334)
T ss_pred             cceeecccCCCCCCCcccHhhcCCCccccccccccCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999876332221  3457888899999999999986

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.94  E-value=1.7e-25  Score=211.43  Aligned_cols=170  Identities=22%  Similarity=0.389  Sum_probs=148.1

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+|+++..++.+..|+....|+..+.  ||+++++.++..|.        .++||+|||+++++++|+++++||.||
T Consensus       332 v~i~d~~~~~~~~~g~~Gel~i~~~~~~~--gy~~~~~~~~~~~~--------~~~~~~TGDl~~~~~~g~~~~~GR~~~  401 (504)
T PRK07514        332 LRVTDPETGAELPPGEIGMIEVKGPNVFK--GYWRMPEKTAEEFR--------ADGFFITGDLGKIDERGYVHIVGRGKD  401 (504)
T ss_pred             EEEEECCCCCCCCCCCceEEEEecCCccc--cccCCchhhhhhcc--------cCCCeeecceEEEcCCccEEEeccccc
Confidence            46677777888777777776666666555  99999999988775        468999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|.++         +|.    +||+.+..+++|.++++++.++...++.++++++.......+.   +++++.+++
T Consensus       402 ~i~~~G~~i---------~~~----~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~  465 (504)
T PRK07514        402 LIISGGYNV---------YPK----EVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDE---AAILAALKG  465 (504)
T ss_pred             eEEeCCeEE---------CHH----HHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCH---HHHHHHHHh
Confidence            999999999         999    9999999999999999999988777788889988876554443   678999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      +++.+++|..++.++++|+|.+||++|++|++++..
T Consensus       466 ~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~  501 (504)
T PRK07514        466 RLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD  501 (504)
T ss_pred             hcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence            999999999999999999999999999999988764

>PRK09274 peptide synthase; Provisional

Probab=99.94  E-value=1.5e-25  Score=214.63  Aligned_cols=166  Identities=17%  Similarity=0.181  Sum_probs=130.7

Q ss_pred             CcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCC--eeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         44 DDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNN--SDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        44 ~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~--w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      ..++.+..|+..+.|+..+.  ||+++++.+...|..      +.+|  ||+|||+|++|++|+|+++||.||+||++|.
T Consensus       380 ~~~~~g~~Gel~v~g~~~~~--GY~~~~~~t~~~~~~------~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~  451 (552)
T PRK09274        380 LRLATGEIGEIVVAGPMVTR--SYYNRPEATRLAKIP------DGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGG  451 (552)
T ss_pred             ccCCCCCeeEEEEecCcccc--cccCChHHhhhhhcc------cCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCE
Confidence            44555555665555555554  999999998876531      2244  9999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccH-HHHHHHHHHHHHhcCCCC
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQ-ELVKQLKQQVREKIGPFA  200 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~l~~~l~~~~  200 (258)
                      ++         +|.    +||++|.+||+|.+|+|+++++.. ++.++++|++.++...+. ++.+.+++.+.. +..++
T Consensus       452 ~v---------~p~----eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~-~~~~~  516 (552)
T PRK09274        452 TL---------YTI----PCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVACSKSALYQELRALAAA-HPHTA  516 (552)
T ss_pred             EE---------CcH----HHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCccccchHHHhhhhHHHHHh-cCCCc
Confidence            99         999    999999999999999999998754 567888888876654332 234445544433 34557


Q ss_pred             CCcEEEECCCCCCC--CCCcccHHHHHHHHhccc
Q psy12528        201 MPDVIQHAPRLPKT--RSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       201 ~p~~~~~~~~lP~t--~~GKi~r~~l~~~~~~~~  232 (258)
                      .|..++++++||+|  .+|||+|++|++++.+..
T Consensus       517 ~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~  550 (552)
T PRK09274        517 GIERFLIHPSFPVDIRHNAKIFREKLAVWAAKQL  550 (552)
T ss_pred             ceeEEeccCCCCccccccccccHHHHHHHHHHhh
Confidence            78899999999999  799999999999887653

>PRK07470 acyl-CoA synthetase; Validated

Probab=99.94  E-value=1.6e-25  Score=213.32  Aligned_cols=163  Identities=25%  Similarity=0.376  Sum_probs=139.2

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|...+  .||+++++.++..|.         ++||+|||++++|++|+++++||.||+||++|.+
T Consensus       358 ~~~~~~g~~Gel~i~~~~~~--~gy~~~~~~~~~~~~---------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~  426 (528)
T PRK07470        358 GRELPPGETGEICVIGPAVF--AGYYNNPEANAKAFR---------DGWFRTGDLGHLDARGFLYITGRASDMYISGGSN  426 (528)
T ss_pred             CCCCCCCCceEEEEeCCccc--hhhcCCHHHHHhhhc---------CCcEecceeEEEccCCeEEEeCCccceEEeCCEE
Confidence            44455555555555554444  499999999987774         6899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||..+.+++.|.+++|++.+++..++.++++++..++...+.   ++++++++++|+.+++|
T Consensus       427 v---------~~~----~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~P  490 (528)
T PRK07470        427 V---------YPR----EIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDE---AELLAWLDGKVARYKLP  490 (528)
T ss_pred             E---------CHH----HHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCH---HHHHHHHHHhhhcCCCC
Confidence            9         999    9999999999999999999998877778888888776544443   68999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ..+++++++|+|.+||++|+.|++++.+.-
T Consensus       491 ~~~~~~~~iP~t~~GKi~r~~l~~~~~~~~  520 (528)
T PRK07470        491 KRFFFWDALPKSGYGKITKKMVREELEERG  520 (528)
T ss_pred             cEEEEeccCCCCCcccccHHHHHHHHHhcc
Confidence            999999999999999999999999887654

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=1.4e-25  Score=215.50  Aligned_cols=171  Identities=29%  Similarity=0.427  Sum_probs=147.4

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .+.+++.+..++.+..|+....|+..+.  ||+++++.+...|.         ++||+|||++++|++|.++++||.||+
T Consensus       388 ~i~~~~~~~~~~~g~~Gel~v~g~~~~~--gY~~~~~~~~~~~~---------~g~~~TGD~~~~~~~g~~~~~GR~dd~  456 (563)
T PRK06710        388 MIMSLETGEALPPGEIGEIVVKGPQIMK--GYWNKPEETAAVLQ---------DGWLHTGDVGYMDEDGFFYVKDRKKDM  456 (563)
T ss_pred             EEEECCCCccCCCCCceEEEEecCccch--hhhCChHHHhhhcc---------cCcccccceEEEcCCCcEEEeeccccE
Confidence            4455566666666666666666655554  99999999988774         689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      |+++|.++         +|.    +||+.|.++|.|.+++|++.++...++.++++++..++...+.   ++++++++++
T Consensus       457 i~~~G~~v---------~p~----eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~---~~l~~~~~~~  520 (563)
T PRK06710        457 IVASGFNV---------YPR----EVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSE---EELNQFARKY  520 (563)
T ss_pred             EEECCEEE---------CHH----HHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCH---HHHHHHHHHh
Confidence            99999999         999    9999999999999999999998877888889998877654443   6888999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE  233 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~  233 (258)
                      ++.+++|..+..++++|+|.+||++|+.|+++...+.+
T Consensus       521 l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~~~~  558 (563)
T PRK06710        521 LAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKRKNE  558 (563)
T ss_pred             cccccCCcEEEEcccCCCCccchhhHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999877653

>PRK06145 acyl-CoA synthetase; Validated

Probab=99.94  E-value=1.9e-25  Score=210.90  Aligned_cols=160  Identities=26%  Similarity=0.395  Sum_probs=137.5

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|...+.  ||+++++.++..|.         ++||+|||++++|++|+++++||.||+||++|.+
T Consensus       337 ~~~~~~~~~Gel~v~g~~~~~--Gy~~~~~~~~~~~~---------~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~  405 (497)
T PRK06145        337 GRWLPPNMKGEICMRGPKVTK--GYWKDPEKTAEAFY---------GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGEN  405 (497)
T ss_pred             CCCCCCCCceEEEEECcchhh--hhcCChHHHHHHHh---------CCCeeccceEEEcCCCcEEEeccccceEEeCCeE
Confidence            344444555555555555554  99999999988774         5899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||+.|.++|+|.+++|++.++...++.+++++++........   +++.++++++++++++|
T Consensus       406 v---------~~~----~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p  469 (497)
T PRK06145        406 I---------ASS----EVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTL---EALDRHCRQRLASFKVP  469 (497)
T ss_pred             E---------CHH----HHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCH---HHHHHHHHHhhhcCCCC
Confidence            9         999    9999999999999999999988877788888888876544443   68999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHh
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAV  229 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~  229 (258)
                      ..++.++++|+|.+||++|+.|++++.
T Consensus       470 ~~i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        470 RQLKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             CEEEEeccCCCCCcccccHHHHHHHhc
Confidence            999999999999999999999998764

>PRK12316 peptide synthase; Provisional

Probab=99.93  E-value=1.2e-25  Score=257.15  Aligned_cols=193  Identities=22%  Similarity=0.275  Sum_probs=161.7

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      ++.++.+..|+..+.|..++.  ||+++++.|+..|..++ +....++||+|||+|++++||.|+++||.|++||++|++
T Consensus      2337 ~~~vp~g~~GEl~i~G~~v~~--GY~~~p~~T~~~f~~~~-~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~r 2413 (5163)
T PRK12316       2337 LNLLAPGMAGELYLGGEGLAR--GYLNRPGLTAERFVPDP-FSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFR 2413 (5163)
T ss_pred             CCCCCCCCeeEEEecchhhcc--cccCChhhhhhhccCCC-CCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCcc
Confidence            456666666666666666555  99999999999997433 222356899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      |         +|.    |||++|.+||+|.+++|++.++. .++.+++++++.++....   .+.++++++++|+.|++|
T Consensus      2414 i---------e~~----eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~---~~~l~~~l~~~Lp~~~vP 2476 (5163)
T PRK12316       2414 I---------ELG----EIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAEDL---LAELRAWLAARLPAYMVP 2476 (5163)
T ss_pred             C---------ChH----HHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCccC---HHHHHHHHHhhCchhcCc
Confidence            9         999    99999999999999999988766 577899999987655433   368999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcccc-cCCCCCCCchHHHHHHHHHccC
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      ..++.++.+|+|+||||+|++|++...+... ....+.+..|+.+.++|+.++.
T Consensus      2477 ~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~ 2530 (5163)
T PRK12316       2477 AHWVVLERLPLNPNGKLDRKALPKPDVSQLRQAYVAPQEGLEQRLAAIWQAVLK 2530 (5163)
T ss_pred             ceEeeecccCCCCCCccCHhhcCCCccccccccccCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999876543322 3456778888999999999875

>PRK05852 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.9e-25  Score=213.39  Aligned_cols=168  Identities=27%  Similarity=0.368  Sum_probs=145.1

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.++ ++..++.+..|+..+.|...+.  ||+++++.++..|.         ++||+|||++++|+||++++.||.+|
T Consensus       365 ~~i~d~-~g~~~~~g~~Gel~v~g~~v~~--gY~~~~~~t~~~~~---------~g~~~TGD~~~~d~dG~l~~~gR~~d  432 (534)
T PRK05852        365 IRIVGS-DGLPLPAGAVGEVWLRGTTVVR--GYLGDPTITAANFT---------DGWLRTGDLGSLSAAGDLSIRGRIKE  432 (534)
T ss_pred             EEEECC-CCCCCCCCCceEEEEecCcccc--hhcCCcccchhhhc---------CCCcccCceEEEeCCCcEEEEecchh
Confidence            355554 3667777777776666666655  99999999987774         58999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +|+++|.++         +|.    +||+.+.++|+|.+|+|+++++...++.++++++..+....+.   +++.+++++
T Consensus       433 ~i~~~G~~v---------~~~----~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~---~~i~~~~~~  496 (534)
T PRK05852        433 LINRGGEKI---------SPE----RVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTA---EELVQFCRE  496 (534)
T ss_pred             hEEECCEEE---------CHH----HHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCH---HHHHHHHHH
Confidence            999999999         999    9999999999999999999998877888889988765543342   689999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      +++++++|..+++++++|+|.+||++|++|++.+.+
T Consensus       497 ~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        497 RLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             hcccccCCeEEEEhhhcCCCCCccccHHHHHHHhcc
Confidence            999999999999999999999999999999998754

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=2.6e-25  Score=214.16  Aligned_cols=170  Identities=22%  Similarity=0.356  Sum_probs=143.9

Q ss_pred             EEEEeCCC-CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCC
Q psy12528         35 ISILEPRL-GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVD  113 (258)
Q Consensus        35 ~~i~~~~~-g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~  113 (258)
                      +.|.+++. +..++.+..|+....|...+  .||+++++.+...|.         +|||+|||++++|++|+++++||.|
T Consensus       400 ~~i~d~~~~~~~~~~g~~Gel~v~~~~~~--~gy~~~~~~~~~~~~---------~g~~~TGD~~~~~~~g~l~i~gR~d  468 (573)
T PRK05605        400 VRIVDPEDPDETMPDGEEGELLVRGPQVF--KGYWNRPEETAKSFL---------DGWFRTGDVVVMEEDGFIRIVDRIK  468 (573)
T ss_pred             EEEEcCCCCCccCCCCCeeEEEEecCchh--hhhcCChhHhhhccc---------CCCcccCCEEEEcCCCcEEEEeccc
Confidence            34555544 45555555555555555444  499999998887774         4699999999999999999999999


Q ss_pred             CeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHH
Q psy12528        114 DMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVR  193 (258)
Q Consensus       114 d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~  193 (258)
                      |+++++|.++         +|.    +||+.+.+|+.|.++++++.++...++.+++++++.++...+.   +++++.++
T Consensus       469 d~i~~~G~~v---------~p~----eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~---~~l~~~~~  532 (573)
T PRK05605        469 ELIITGGFNV---------YPA----EVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDP---EGLRAYCR  532 (573)
T ss_pred             cceeeCCEEE---------CHH----HHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCH---HHHHHHHH
Confidence            9999999999         999    9999999999999999999998877889999998877654443   68999999


Q ss_pred             HhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        194 EKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       194 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++++.+++|..++.++++|+|.+||++|+.|++++.+.
T Consensus       533 ~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~  570 (573)
T PRK05605        533 EHLTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEK  570 (573)
T ss_pred             HhCccccCCcEEEEeccCCCCCcccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999988654

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=3.4e-25  Score=209.58  Aligned_cols=167  Identities=26%  Similarity=0.383  Sum_probs=144.0

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|...+  .||+++++.+...+.        .++||+|||++++|++|.+++.||.|+++|++|.+
T Consensus       332 ~~~~~~g~~Gel~v~~~~~~--~gy~~~~~~~~~~~~--------~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~  401 (502)
T PRK08276        332 GNELPPGEIGTVYFEMDGYP--FEYHNDPEKTAAARN--------PHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVN  401 (502)
T ss_pred             CCCCcCCCceEEEEECCCcc--chhcCCHHHHHHHhc--------CCCceeecceEEEcCCcCEEEeccCcceEEeCCEE
Confidence            34445555555555555554  499999999988875        35999999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||..+.++|+|.++++++..++..++.+++++++..+...++.+.+.+.+.++++++.++.|
T Consensus       402 v---------~~~----~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p  468 (502)
T PRK08276        402 I---------YPQ----EIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCP  468 (502)
T ss_pred             e---------CHH----HHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCC
Confidence            9         999    999999999999999999998887788999999988765555555678999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ..++.++++|+|++||++|++|++.+..+.
T Consensus       469 ~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~  498 (502)
T PRK08276        469 RSIDFEDELPRTPTGKLYKRRLRDRYWEGR  498 (502)
T ss_pred             cEEEEecCCCCCcccchhHHHHHHHHHhhh
Confidence            999999999999999999999999987654

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=4e-25  Score=209.91  Aligned_cols=166  Identities=25%  Similarity=0.356  Sum_probs=140.4

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|. .+  .+|+++++.+...+.       ..++||+|||+++++++|.+++.||.||++|++|.+
T Consensus       345 ~~~~~~g~~Gel~~~g~-~~--~gy~~~~~~~~~~~~-------~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~  414 (511)
T PRK13391        345 GAELPPGEPGTIWFEGG-RP--FEYLNDPAKTAEARH-------PDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVN  414 (511)
T ss_pred             CCCCCCCCceEEEEecC-cc--eEEcCChhHhHHhhc-------cCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEE
Confidence            34444444555555555 33  489999999887765       225999999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||+++.+||.|.+++++++++...++.++++++..++...++.+.++++++++++++.++.|
T Consensus       415 v---------~~~----eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P  481 (511)
T PRK13391        415 I---------YPQ----EAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCP  481 (511)
T ss_pred             E---------CHH----HHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCC
Confidence            9         999    999999999999999999998888788888888877655444445578999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ..+..++++|+|++||++|+.|++.+.+.
T Consensus       482 ~~i~~~~~~P~t~~gKv~r~~l~~~~~~~  510 (511)
T PRK13391        482 RSIDFEDELPRLPTGKLYKRLLRDRYWGN  510 (511)
T ss_pred             cEEEEeecCCCCCccceeHHHHHHHhhcc
Confidence            99999999999999999999999988654

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.93  E-value=2e-25  Score=213.91  Aligned_cols=159  Identities=23%  Similarity=0.311  Sum_probs=132.4

Q ss_pred             CCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeeccc
Q psy12528         51 SMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS  130 (258)
Q Consensus        51 ~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~  130 (258)
                      .|+..+.|+..+  .||+++++.+...|.         +|||+|||++++|++|++++.||.||+||++|.++       
T Consensus       374 ~Gel~v~g~~~~--~GY~~~~~~t~~~~~---------~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v-------  435 (540)
T PRK05857        374 FGTLWIKSPANM--LGYWNNPERTAEVLI---------DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNI-------  435 (540)
T ss_pred             cceEEEeCcchh--hhhhCCccchhhhcC---------CCceeccceEEEcCCceEEEeccccccEecCCEEE-------
Confidence            344444444443  499999998887774         68999999999999999999999999999999999       


Q ss_pred             ccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCc--cHHHHHHHHHHHHHhcCCCCCCcEEEEC
Q psy12528        131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATF--NQELVKQLKQQVREKIGPFAMPDVIQHA  208 (258)
Q Consensus       131 ~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~p~~~~~~  208 (258)
                        +|.    +||.+|..||+|.+|+|+++++...++.++++++.......  .+++.+.+.+.++++++++++|..++++
T Consensus       436 --~p~----eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~  509 (540)
T PRK05857        436 --APD----EVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIV  509 (540)
T ss_pred             --CHH----HHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEh
Confidence              999    99999999999999999999987777777777766543211  2334556777777889999999999999


Q ss_pred             CCCCCCCCCcccHHHHHHHHhcccc
Q psy12528        209 PRLPKTRSGKIMRRVLRKVAVNDRE  233 (258)
Q Consensus       209 ~~lP~t~~GKi~r~~l~~~~~~~~~  233 (258)
                      +++|+|++||++|+.|++.++.++.
T Consensus       510 ~~iP~t~~GKi~r~~l~~~~~~~~~  534 (540)
T PRK05857        510 TDIPRTQSGKVMRASLAAAATADKA  534 (540)
T ss_pred             hcCCCCCCcceeHHHHHHhhhhccc
Confidence            9999999999999999999887753

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.93  E-value=1.6e-25  Score=213.95  Aligned_cols=153  Identities=18%  Similarity=0.178  Sum_probs=117.1

Q ss_pred             CCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEe
Q psy12528         46 LNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTV  125 (258)
Q Consensus        46 ~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~  125 (258)
                      ++.+..|+..+.|...+.  ||+++++.             +.++||+|||++++| +|+|+|+||.||+||++|++|  
T Consensus       367 ~~~g~~GEl~v~g~~~~~--GY~~~~~~-------------~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v--  428 (525)
T PRK05851        367 VAGREIGEIEIRGASMMS--GYLGQAPI-------------DPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNI--  428 (525)
T ss_pred             CCCCCeEEEEEecCchhh--ccccCCcc-------------CCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEe--
Confidence            344444444444544444  89998752             136899999999996 799999999999999999999  


Q ss_pred             eecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCC--CCCc
Q psy12528        126 YFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF--AMPD  203 (258)
Q Consensus       126 ~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~  203 (258)
                             +|.    +||+.|.+||+|.+|+|++.+++..++.+.+++.........    +.+.+.++++++.+  ++|.
T Consensus       429 -------~p~----eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~l~~~l~~~P~  493 (525)
T PRK05851        429 -------FPT----EIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDE----AGARSEVVQRVASECGVVPS  493 (525)
T ss_pred             -------CHH----HHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcch----HHHHHHHHHHHHHHhCCCcc
Confidence                   999    999999999999999999998877676666665543211122    23444455555444  8999


Q ss_pred             EEEECC--CCCCCCCCcccHHHHHHHHhcc
Q psy12528        204 VIQHAP--RLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       204 ~~~~~~--~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      .+++++  +||+|++||++|+.|++.+.+.
T Consensus       494 ~~~~v~~~~lP~t~~GKi~r~~L~~~~~~~  523 (525)
T PRK05851        494 DVVFVAPGSLPRTSSGKLRRLAVKRSLEAA  523 (525)
T ss_pred             EEEEECCCCcCcCcchHHHHHHHHHHHHhc
Confidence            999998  8999999999999999988653

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=99.93  E-value=4.4e-25  Score=211.59  Aligned_cols=161  Identities=24%  Similarity=0.371  Sum_probs=136.6

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|...+.  ||+++++.++..          .+|||+|||+++++++|++++.||.||+||++|.+
T Consensus       384 ~~~~~~g~~Gel~v~g~~~~~--gY~~~~~~t~~~----------~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~  451 (547)
T PRK13295        384 GAPLPAGQIGRLQVRGCSNFG--GYLKRPQLNGTD----------ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGEN  451 (547)
T ss_pred             CCCCCCCCCCeEEEEcCcccc--cccCCccccccC----------CCCCeecceEEEEcCCceEEEEeccCCeEEECCEE
Confidence            344555555555555655554  999998877653          25799999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH-hcCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE-KIGPFAM  201 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~  201 (258)
                      +         +|.    +||+.|.+++.|.+++|++.++...++.+++++++..+...+.   +++.+++.+ .++++++
T Consensus       452 v---------~p~----~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~---~~l~~~~~~~~l~~~~~  515 (547)
T PRK13295        452 I---------PVV----EIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDF---EEMVEFLKAQKVAKQYI  515 (547)
T ss_pred             E---------CHH----HHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCH---HHHHHHHHhccCccccC
Confidence            9         999    9999999999999999999998887889999998876544332   578888886 6999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      |..++.++++|+|.+||++|++|++++...
T Consensus       516 P~~i~~v~~lP~t~sgK~~r~~L~~~~~~~  545 (547)
T PRK13295        516 PERLVVRDALPRTPSGKIQKFRLREMLRGE  545 (547)
T ss_pred             CcEEEEeccCCCCCCccccHHHHHHHHhcC
Confidence            999999999999999999999999987653

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.9e-25  Score=216.46  Aligned_cols=152  Identities=24%  Similarity=0.265  Sum_probs=126.3

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .|| ++++.++..|.... + ...++||+|||+|++|+||+|+++||.||+||++|+++         +|.    +||+.
T Consensus       417 ~GY-~~~~~t~~~~~~~~-~-~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i---------~p~----eIE~~  480 (600)
T PRK08279        417 DGY-TDPEASEKKILRDV-F-KKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENV---------ATT----EVENA  480 (600)
T ss_pred             ccc-CCchhhHHHHhhcc-c-CCCCceEeecceEEEcCCccEEEecccCCeEEECCccc---------CHH----HHHHH
Confidence            489 88888877664211 1 13468999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCC-CcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVK-GECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRV  223 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~  223 (258)
                      +.+||+|.+|+|++++++.. +...+++++..++...+.   ++++++++++|+.+++|..+++++++|+|.+||++|++
T Consensus       481 l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~~---~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~  557 (600)
T PRK08279        481 LSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDL---AALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVD  557 (600)
T ss_pred             HhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCCH---HHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHH
Confidence            99999999999999886542 344455555554433332   68999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccC
Q psy12528        224 LRKVAVNDREVG  235 (258)
Q Consensus       224 l~~~~~~~~~~~  235 (258)
                      |++++.+.....
T Consensus       558 L~~~~~~~~~~~  569 (600)
T PRK08279        558 LRKEGFDPSKVD  569 (600)
T ss_pred             HhhcCCCccccC
Confidence            999998886443

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.93  E-value=2.7e-25  Score=210.95  Aligned_cols=158  Identities=20%  Similarity=0.360  Sum_probs=136.1

Q ss_pred             CCCcCCCCCCCCCeEEee---cccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE
Q psy12528         42 LGDDLNLTLSMNPTLVGR---RAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV  118 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~---~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~  118 (258)
                      .+..++.+..|+....|.   ..+  .||+++++.+++.|.        .+|||+|||++++|++|+++++||.||+||+
T Consensus       357 ~~~~~~~g~~Gel~v~g~~~~~~~--~gy~~~~~~~~~~~~--------~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~  426 (517)
T PRK08008        357 HNRPLPAGEIGEICIKGVPGKTIF--KEYYLDPKATAKVLE--------ADGWLHTGDTGYVDEEGFFYFVDRRCNMIKR  426 (517)
T ss_pred             CCCCCCCCCcceEEEeCCCCcchh--hhHhCChHHHhhccc--------CCCCeeccceEEECCCCcEEEeecccceEEe
Confidence            355556555555555542   333  499999999988885        4689999999999999999999999999999


Q ss_pred             CcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCC
Q psy12528        119 SGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGP  198 (258)
Q Consensus       119 ~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~  198 (258)
                      +|.++         +|.    +||+++.+|+.|.+++|+++++...++.+.+++++..+...+.   +++++++++++++
T Consensus       427 ~G~~i---------~p~----~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~  490 (517)
T PRK08008        427 GGENV---------SCV----ELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSE---EEFFAFCEQNMAK  490 (517)
T ss_pred             CCEEE---------CHH----HHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCH---HHHHHHHHhhccc
Confidence            99999         999    9999999999999999999998877888999999887655443   6899999999999


Q ss_pred             CCCCcEEEECCCCCCCCCCcccHHHHH
Q psy12528        199 FAMPDVIQHAPRLPKTRSGKIMRRVLR  225 (258)
Q Consensus       199 ~~~p~~~~~~~~lP~t~~GKi~r~~l~  225 (258)
                      +++|..+++++++|+|++||++|+.|+
T Consensus       491 ~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        491 FKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             ccCCcEEEEeccCCCCCccceehhhcC
Confidence            999999999999999999999999874

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.93  E-value=3.4e-25  Score=231.12  Aligned_cols=194  Identities=19%  Similarity=0.284  Sum_probs=154.1

Q ss_pred             CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      .+..++.+..|+....|...+.  ||+++++.|+..|...+ +. ..++||+|||+|++++||.++++||.|++||++|+
T Consensus       793 ~~~~~~~g~~Gel~i~g~~~~~--GY~~~~~~t~~~f~~~~-~~-~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~  868 (1296)
T PRK10252        793 RMRPVPPGVAGDLYLTGIQLAQ--GYLGRPDLTASRFIADP-FA-PGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQ  868 (1296)
T ss_pred             CCCCCCCCCceEEEecccccch--hhCCCcccchhhcccCC-CC-CCCEEEecCceEEEcCCCcEEEecccCCeEEEeeE
Confidence            3455565555665555555555  99999999999887443 22 34679999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeee----C--CCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP----H--PVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~----~--~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      +|         +|.    |||+.|.+||+|.+++|+...    +  ......++++++...+...+   .+++++.++++
T Consensus       869 ri---------~~~----eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~---~~~l~~~l~~~  932 (1296)
T PRK10252        869 RI---------ELG----EIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLD---TSALQAQLRER  932 (1296)
T ss_pred             Ee---------cHH----HHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCC---HHHHHHHHHhh
Confidence            99         999    999999999999999877652    1  11224788888876654333   26899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccC
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      |+.+++|..++.++++|+|++||++|++|++...........+.+..|+.+.++|++++.
T Consensus       933 Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~e~~l~~~~~~~l~  992 (1296)
T PRK10252        933 LPPHMVPVVLLQLDQLPLSANGKLDRKALPLPELKAQVPGRAPKTGTETIIAAAFSSLLG  992 (1296)
T ss_pred             CchhcCCcEEEEecCCCCCCCcChhHHhcCCCcccccccCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999997643222223456777888899999999875

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.93  E-value=3.9e-25  Score=208.79  Aligned_cols=166  Identities=21%  Similarity=0.279  Sum_probs=134.5

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|+..+.  ||+++++.+...|...     ..++||+|||+|++|++ +|+++||.+|+|+++|.+
T Consensus       334 ~~~~~~g~~Gel~v~g~~~~~--gy~~~~~~~~~~~~~~-----~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~  405 (502)
T TIGR01734       334 GEPLPEGEKGEIVIVGPSVSK--GYLNNPEKTAEAFFSH-----EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYR  405 (502)
T ss_pred             CCCCCCCCeeEEEEccccccc--cccCCcccchHhheeC-----CCcEEEECCCEEEEECC-EEEEeccccCeEEECcEE
Confidence            444555555555555555554  9999998887766421     23579999999999876 999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeee-CCCCCcEEEEEEEeCCCCC-ccHHHHHHHHHHHHHhcCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP-HPVKGECLYCFITPAGGAT-FNQELVKQLKQQVREKIGPFA  200 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~l~~~~  200 (258)
                      +         +|.    +||+.+.++|.|.++++++.. .....+.++++++...... ....+.+++++.+++++++++
T Consensus       406 v---------~~~----~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~  472 (502)
T TIGR01734       406 I---------ELE----DIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYM  472 (502)
T ss_pred             e---------CHH----HHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhc
Confidence            9         999    999999999999999999875 4444567888888765432 223344788999999999999


Q ss_pred             CCcEEEECCCCCCCCCCcccHHHHHHHHh
Q psy12528        201 MPDVIQHAPRLPKTRSGKIMRRVLRKVAV  229 (258)
Q Consensus       201 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~  229 (258)
                      +|..+++++++|+|++||++|++|++++.
T Consensus       473 ~P~~~~~v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       473 IPRKFIYRDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             CCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence            99999999999999999999999998764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PLN03052 acetate--CoA ligase; Provisional

Probab=99.93  E-value=6e-25  Score=218.19  Aligned_cols=152  Identities=26%  Similarity=0.369  Sum_probs=127.7

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .+|+++. ....+|.+.+.+  +.++||+|||++++|+||+++|+||.||+||++|++|         +|.    |||++
T Consensus       567 ~~~~~~~-~~~~yf~~~p~~--~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI---------~~~----EIE~~  630 (728)
T PLN03052        567 STLLNAD-HYKVYFKGMPVF--NGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKV---------SSV----EIERV  630 (728)
T ss_pred             ccccCch-hhhhhhhcCCCC--CCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEe---------CHH----HHHHH
Confidence            3566664 456666543322  2345999999999999999999999999999999999         999    99999


Q ss_pred             HH-cCCCcceEEEEeeeCCCCC-cEEEEEEEeC--CCCCcc-HHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcc
Q psy12528        145 LA-SHPDVSEAAVVSRPHPVKG-ECLYCFITPA--GGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI  219 (258)
Q Consensus       145 l~-~~~~v~~a~vv~~~~~~~~-~~~~~~v~~~--~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi  219 (258)
                      |. .||.|.+++|++++++..+ +.+++||++.  ++...+ +++.+.+++.+++++++++.|..|+++++||+|.||||
T Consensus       631 l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi  710 (728)
T PLN03052        631 CNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKV  710 (728)
T ss_pred             HHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHH
Confidence            95 8999999999999987665 7899999987  444433 66777888889999999999999999999999999999


Q ss_pred             cHHHHHHHHhccc
Q psy12528        220 MRRVLRKVAVNDR  232 (258)
Q Consensus       220 ~r~~l~~~~~~~~  232 (258)
                      +|+.|++.+....
T Consensus       711 ~Rr~Lr~~~~~~~  723 (728)
T PLN03052        711 MRRVLRQQLAQEL  723 (728)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999886553

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=4.4e-25  Score=211.66  Aligned_cols=142  Identities=25%  Similarity=0.408  Sum_probs=126.8

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .||+++++.++..|.         +|||+|||++++|++|+++++||.||+||++|+++         +|.    +||+.
T Consensus       364 ~gY~~~~~~t~~~~~---------~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v---------~p~----eIE~~  421 (540)
T PRK13388        364 EGYYNNPEATAERMR---------HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENL---------SAA----PIERI  421 (540)
T ss_pred             ccccCChHHHHHHhh---------cCceeccceEEEcCCCcEEEeccCCceEEECCEEe---------CHH----HHHHH
Confidence            599999999988774         58999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh--cCCCCCCcEEEECCCCCCCCCCcccHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK--IGPFAMPDVIQHAPRLPKTRSGKIMRR  222 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~--l~~~~~p~~~~~~~~lP~t~~GKi~r~  222 (258)
                      |.+||+|.+|+|++.++...++.+++++++.++...+.   ++++++++.+  ++.+++|..+++++++|+|++||++|+
T Consensus       422 l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~---~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~  498 (540)
T PRK13388        422 LLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDP---DAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKR  498 (540)
T ss_pred             HHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCH---HHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHH
Confidence            99999999999999998877888888888876654443   5677788764  999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q psy12528        223 VLRKVAVND  231 (258)
Q Consensus       223 ~l~~~~~~~  231 (258)
                      +|+++....
T Consensus       499 ~L~~~~~~~  507 (540)
T PRK13388        499 ELIAQGWAT  507 (540)
T ss_pred             hHHHhccCC
Confidence            999987554

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=99.93  E-value=3.1e-25  Score=212.90  Aligned_cols=164  Identities=12%  Similarity=0.100  Sum_probs=128.7

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+++++..++.++.|+....|...+.  ||+++++.+.....       ..++||+|||+|++|++|+|+++||.||+
T Consensus       365 ~i~d~~~~~~~~~g~~Gel~v~g~~~~~--GY~~~~~~~~~~~~-------~~~~w~~TGD~g~~d~~G~l~~~GR~~d~  435 (539)
T PRK06334        365 LIVSEETKVPVSSGETGLVLTRGTSLFS--GYLGEDFGQGFVEL-------GGETWYVTGDLGYVDRHGELFLKGRLSRF  435 (539)
T ss_pred             EEEcCCCCccCCCCceEEEEEecCcccc--cccCCcccccceee-------CCceeEECCCEEEECCCCeEEEEeccCCe
Confidence            4555555666666666666666666555  99999885432211       24689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcce------EEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHH
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSE------AAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLK  189 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~------a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~  189 (258)
                      ||++|++|         +|.    |||++|.+||+|.+      +++++.++.  ...+++++...  .  +   .++++
T Consensus       436 ik~~G~~v---------~p~----eIE~~l~~~~~v~~~~~~~~~~v~~~~~~--~~~~~~~~~~~--~--~---~~~~~  493 (539)
T PRK06334        436 VKIGAEMV---------SLE----ALESILMEGFGQNAADHAGPLVVCGLPGE--KVRLCLFTTFP--T--S---ISEVN  493 (539)
T ss_pred             EEECCEEE---------CHH----HHHHHHHHccCCccccccCceEEEcCCCC--ceEEEEEEecc--C--C---hHHHH
Confidence            99999999         999    99999999999987      677776643  23455555432  1  1   25788


Q ss_pred             HHHHHh-cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        190 QQVREK-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       190 ~~l~~~-l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      ++++++ ++.++.|..+++++++|+|++|||+|+.|++++..
T Consensus       494 ~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        494 DILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             HHHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHH
Confidence            888886 78899999999999999999999999999988654

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.93  E-value=4.1e-25  Score=212.52  Aligned_cols=168  Identities=29%  Similarity=0.409  Sum_probs=143.6

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .+.+++.+..++.+..|+..+.|+..+.  ||+++++.++..|.         +|||+|||+++++++|+++++||.+|+
T Consensus       399 ~v~d~~~~~~~~~g~~Gel~v~g~~v~~--gY~~~~~~~~~~~~---------dg~~~TGDl~~~~~~g~l~i~GR~~d~  467 (567)
T PRK06178        399 KICDFETGELLPLGAEGEIVVRTPSLLK--GYWNKPEATAEALR---------DGWLHTGDIGKIDEQGFLHYLGRRKEM  467 (567)
T ss_pred             EEEcCCCCCcCCCCCceEEEEECCcccc--cccCChhhhhhccc---------CCceeecceEEEecCCeEEEEeccccc
Confidence            4555566666776666666666665555  99999999987764         589999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      |+++|.++         +|.    +||+.+.++++|.++++++.++...++.+++++++..+...+.   +++++.++++
T Consensus       468 i~~~G~~i---------~~~----eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~---~~l~~~~~~~  531 (567)
T PRK06178        468 LKVNGMSV---------FPS----EVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTA---AALQAWCREN  531 (567)
T ss_pred             EEECCEEE---------CHH----HHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCH---HHHHHHHHhc
Confidence            99999999         999    9999999999999999999988777788888988876554443   6799999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++.+++|. +++++++|+|.+||++|+.|++++.+.
T Consensus       532 l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~~  566 (567)
T PRK06178        532 MAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEEL  566 (567)
T ss_pred             CcccCCce-EEEeccCCCCCccceeHHHHHHHHHhh
Confidence            99999996 888999999999999999999988653

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.3e-24  Score=204.93  Aligned_cols=164  Identities=28%  Similarity=0.451  Sum_probs=139.7

Q ss_pred             CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      ++..++.+..|+....|+..+.  ||+++++.++..|.        .+|||+|||++++|++|.++++||.||+|+++|.
T Consensus       323 ~~~~~~~g~~Gel~v~~~~~~~--gY~~~~~~~~~~~~--------~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~  392 (488)
T PRK09088        323 QGNDCPAGVPGELLLRGPNLSP--GYWRRPQATARAFT--------GDGWFRTGDIARRDADGFFWVVDRKKDMFISGGE  392 (488)
T ss_pred             CCCCCcCCCceEEEEECCccch--hhcCChhhhhhhhc--------CCCCeeecceEEEcCCCcEEEeccccceEEeCCE
Confidence            3455555555555555555444  99999998887774        4699999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCC
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM  201 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  201 (258)
                      ++         +|.    +||+.|.++|.|.++++++++++..++..++++++.++...+   ..++.+.++++++++++
T Consensus       393 ~i---------~~~----~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~  456 (488)
T PRK09088        393 NV---------YPA----EIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLD---LERIRSHLSTRLAKYKV  456 (488)
T ss_pred             EE---------CHH----HHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCC---HHHHHHHHHhhCcCCCC
Confidence            99         999    999999999999999999998876677788888877654433   26899999999999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      |..+.+++++|+|.+||++|++|++++.+.
T Consensus       457 p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~  486 (488)
T PRK09088        457 PKHLRLVDALPRTASGKLQKARLRDALAAG  486 (488)
T ss_pred             CCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence            999999999999999999999999988764

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.93  E-value=2.7e-25  Score=214.37  Aligned_cols=166  Identities=20%  Similarity=0.322  Sum_probs=137.0

Q ss_pred             CCCeEEeecccccccccCChHHH----hhhcccCCCc----CcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEE
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVR----AQLLHGHNNF----SFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLM  123 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~----~~~~~~~~~~----~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v  123 (258)
                      |+....|...+  .||+++++.+    +..|.....+    .+..+|||+|||++++|+||.++++||.+|+|+++|.++
T Consensus       386 Gel~v~g~~~~--~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i  463 (576)
T PRK05620        386 GEIQVRGNWVT--ASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWI  463 (576)
T ss_pred             eEEEEEcCccc--ccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEE
Confidence            33333444433  5999999887    4555432211    123478999999999999999999999999999999999


Q ss_pred             EeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCc
Q psy12528        124 TVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPD  203 (258)
Q Consensus       124 ~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~  203 (258)
                               +|.    +||+.|.+||.|.+++|++.++...++.+++++.+.++...+....++++++++++|+.+++|.
T Consensus       464 ---------~~~----eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~  530 (576)
T PRK05620        464 ---------YSA----QLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPE  530 (576)
T ss_pred             ---------cHH----HHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCe
Confidence                     999    9999999999999999999998887888888888776544333334789999999999999999


Q ss_pred             EEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        204 VIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       204 ~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      .+++++++|+|.+||++|++|++++.+.+
T Consensus       531 ~i~~v~~~P~t~~GKv~r~~L~~~~~~~~  559 (576)
T PRK05620        531 YWTFVDEIDKTSVGKFDKKDLRQHLADGD  559 (576)
T ss_pred             EEEEeccCCCCCcccCcHHHHHHHHhcCC
Confidence            99999999999999999999999998654

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.93  E-value=7.4e-26  Score=203.41  Aligned_cols=169  Identities=28%  Similarity=0.422  Sum_probs=149.2

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+ .+|+++++++.|+.-..|+=.+.  ||++.|+..++.|+        .+|+|+|||++++|+||+|.+.||.||
T Consensus       370 vrvvD-~dg~pv~pGE~G~LltRGPYTir--GYyrap~HNa~aF~--------a~GFYrsGD~V~~~~dGyl~V~GR~KD  438 (542)
T COG1021         370 VRVVD-ADGNPVAPGEVGELLTRGPYTIR--GYYRAPEHNARAFD--------ADGFYRSGDLVRRDPDGYLVVEGRVKD  438 (542)
T ss_pred             eEEec-CCCCCCCCCCcceeeecCCeeee--eeccCchhhhhccC--------cCCceecCceeEecCCceEEEEeeehh
Confidence            45555 45888888887775555554454  99999999999885        789999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +|+.+|++|         ..+    |||+.|++||.|.+|+++..+|.--|++.|+||+..+.....    .++++++.+
T Consensus       439 QINRgGEKI---------AAe----EvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~----~qlr~~L~~  501 (542)
T COG1021         439 QINRGGEKI---------AAE----EVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRA----AQLRRFLRE  501 (542)
T ss_pred             hhccccchh---------hHH----HHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCH----HHHHHHHHH
Confidence            999999999         888    999999999999999999999999999999999998765333    689999998


Q ss_pred             h-cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        195 K-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 ~-l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      . +..|++|+++.+++.+|.|+-|||+++.|++++...
T Consensus       502 ~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~  539 (542)
T COG1021         502 RGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR  539 (542)
T ss_pred             cchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence            8 999999999999999999999999999999887654

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.1e-24  Score=208.10  Aligned_cols=170  Identities=24%  Similarity=0.305  Sum_probs=146.7

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+++++..++.++.|+..+.|+..+.  ||+++++.++..|.        .++||+|||+|++|++|++++.||.||+
T Consensus       362 ~i~d~~~~~~~~~g~~Gel~v~g~~~~~--gY~~~~~~t~~~~~--------~~~~~~TGDl~~~~~~g~l~~~GR~~~~  431 (540)
T PRK06164        362 RARDPQDGALLPDGESGEIEIRAPSLMR--GYLDNPDATARALT--------DDGYFRTGDLGYTRGDGQFVYQTRMGDS  431 (540)
T ss_pred             EEecCCCCcCCCCCCeeEEEEecccccc--cccCCchhhhhccc--------CCCceecCCeEEEcCCceEEEEeecCCe
Confidence            5566666777777777777777777666  99999999988775        4689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      ||++|.++         +|.    +||+.|.+|++|.+++|++.+.. .+..+++++++.++...+.   +++.++++++
T Consensus       432 i~~~G~~i---------~p~----eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~~~~~~---~~l~~~~~~~  494 (540)
T PRK06164        432 LRLGGFLV---------NPA----EIEHALEALPGVAAAQVVGATRD-GKTVPVAFVIPTDGASPDE---AGLMAACREA  494 (540)
T ss_pred             EEECCEEc---------CHH----HHHHHHHhCCCceeEEEEecCCC-CceeEEEEEEeCCCCCCCH---HHHHHHHHhh
Confidence            99999999         999    99999999999999999998743 4567888888876544443   6899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCC---cccHHHHHHHHhccc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSG---KIMRRVLRKVAVNDR  232 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~G---Ki~r~~l~~~~~~~~  232 (258)
                      ++++++|..+++++.+|+|.+|   |++|+.|++++++..
T Consensus       495 l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~  534 (540)
T PRK06164        495 LAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARL  534 (540)
T ss_pred             cccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhh
Confidence            9999999999999999999999   999999999877654

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.93  E-value=5e-25  Score=211.99  Aligned_cols=164  Identities=26%  Similarity=0.406  Sum_probs=137.5

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.++ .+..++.+..|+..+.|+..+  .||+++++.+...|.        .++||+|||++++|++|++++.||.||+
T Consensus       398 ~ivd~-~~~~~~~g~~Gel~v~g~~~~--~gY~~~~~~t~~~~~--------~~g~~~TGD~g~~~~~G~l~i~GR~~~~  466 (562)
T PRK12492        398 KVIDD-DGNELPLGERGELCIKGPQVM--KGYWQQPEATAEALD--------AEGWFKTGDIAVIDPDGFVRIVDRKKDL  466 (562)
T ss_pred             EEECC-CCCCCCCCCceEEEEeCCccc--cccccCchhhhhccc--------CCCceecCcEEEECCCCeEEEecccCCe
Confidence            34443 345555555555555555444  499999999988774        3689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      |+++|.++         +|.    +||..|.+||.|.++++++.++...++.+.++++..... .+   .++++++++++
T Consensus       467 i~~~G~~i---------~~~----eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~---~~~i~~~~~~~  529 (562)
T PRK12492        467 IIVSGFNV---------YPN----EIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPG-LS---VEELKAYCKEN  529 (562)
T ss_pred             EEECCEEE---------CHH----HHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC-CC---HHHHHHHHHHh
Confidence            99999999         999    999999999999999999998877778888888765433 22   26899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHH
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKV  227 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~  227 (258)
                      ++.+++|..+..++++|+|.+||++|++|+++
T Consensus       530 l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        530 FTGYKVPKHIVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             cccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence            99999999999999999999999999999875

>PRK12316 peptide synthase; Provisional

Probab=99.93  E-value=4.6e-25  Score=252.30  Aligned_cols=195  Identities=22%  Similarity=0.243  Sum_probs=162.3

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.++ .+..++.+..|+..+.|..++.  ||+++++.|+..|...+ +. ..++||+|||+|++++||.|+++||.||+
T Consensus       837 ~i~d~-~~~~~p~G~~GEl~i~G~~v~~--GYl~~~~~t~~~f~~~~-~~-~~~~~y~TGDl~~~~~dG~l~~~GR~d~~  911 (5163)
T PRK12316        837 YILDA-NLEPVPVGVLGELYLAGRGLAR--GYHGRPGLTAERFVPSP-FV-AGERMYRTGDLARYRADGVIEYAGRIDHQ  911 (5163)
T ss_pred             EEECC-CCCCCCCCCceEEEecccccCh--hhCCChhhhhhhCCCCC-CC-CCCeeEecCccEEECCCCCEEeecccCCE
Confidence            44443 3566677777776676766666  99999999999886433 21 35689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      ||++|++|         +|.    |||++|.+||+|.+|+|++.+    ++.++++|++.++.....   +.++++++++
T Consensus       912 ik~~G~rI---------~~~----EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~~---~~l~~~l~~~  971 (5163)
T PRK12316        912 VKLRGLRI---------ELG----EIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWR---EALKAHLAAS  971 (5163)
T ss_pred             EEEceEEc---------ChH----HHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCCH---HHHHHHHHhh
Confidence            99999999         999    999999999999999999885    568999998876543332   6899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc-ccCCCCCCCchHHHHHHHHHccC
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      |+.|++|..++.++++|+|++||++|++|.+...... .....+.+..|+.+..+|++++.
T Consensus       972 Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vL~ 1032 (5163)
T PRK12316        972 LPEYMVPAQWLALERLPLTPNGKLDRKALPAPEASVAQQGYVAPRNALERTLAAIWQDVLG 1032 (5163)
T ss_pred             CCCccCCCeEEEHhhCCCCCCCChhHHhhcCccccccccccCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999987654322 13456778888999999999885

>PRK08316 acyl-CoA synthetase; Validated

Probab=99.93  E-value=7.1e-25  Score=207.59  Aligned_cols=162  Identities=27%  Similarity=0.399  Sum_probs=141.0

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|...+.  +|+++++.++..|.         ++||+|||+|++|++|.+++.||.||+|+++|.+
T Consensus       359 ~~~~~~g~~Gei~v~~~~~~~--~y~~~~~~~~~~~~---------~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~  427 (523)
T PRK08316        359 GNDVAPGEVGEIVHRSPQLML--GYWDDPEKTAEAFR---------GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGEN  427 (523)
T ss_pred             CCCCCCCCcceEEEECCchhh--hhcCCHHHHHHHhh---------CCCeeccceEEEcCCceEEEecccccEEEeCCeE
Confidence            555565666666666655544  89999998888774         6899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||+.+.++++|.++++++.+++..++.++++++..++.....   +.+.+.++++++.+++|
T Consensus       428 i---------~~~----~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p  491 (523)
T PRK08316        428 V---------ASR----EVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTE---DELIAHCRARLAGFKVP  491 (523)
T ss_pred             E---------CHH----HHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCH---HHHHHHHHHhcccCCCC
Confidence            9         999    9999999999999999999998887888999998876654443   67888999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ..++.++++|+|++||++|++|++++.+.
T Consensus       492 ~~i~~v~~~p~t~~gKi~r~~l~~~~~~~  520 (523)
T PRK08316        492 KRVIFVDELPRNPSGKILKRELRERYAGA  520 (523)
T ss_pred             cEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence            99999999999999999999999998654

>PRK12467 peptide synthase; Provisional

Probab=99.93  E-value=4.1e-25  Score=249.15  Aligned_cols=196  Identities=19%  Similarity=0.268  Sum_probs=157.9

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|..++.  ||+|+++.|+..|...+ +...+++||+|||++++++||.|+++||.|++||++|++
T Consensus      1910 ~~~vp~G~~GEl~i~G~~v~~--GYl~~p~~t~~~f~~~p-~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~r 1986 (3956)
T PRK12467       1910 LNPVPIGVAGELYLGGVGLAR--GYLNRPALTAERFVADP-FGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFR 1986 (3956)
T ss_pred             CCCCCCCCceEEEeccccccc--cccCChhhhhhhCcCCC-CCCCCccceeccceEEECCCCCEEEecccCceEEeCeEE
Confidence            444555555555555555555  99999999999997443 222346899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc-----HHHHHHHHHHHHHhcC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-----QELVKQLKQQVREKIG  197 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~l~~~l~~~l~  197 (258)
                      |         +|.    |||+.|.+||+|.+|+|++.+ ...+..++++++........     ....+.+++.++++|+
T Consensus      1987 I---------el~----eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp 2052 (3956)
T PRK12467       1987 I---------ELG----EIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLP 2052 (3956)
T ss_pred             e---------chH----HHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCc
Confidence            9         999    999999999999999999886 34467888998876543211     1134679999999999


Q ss_pred             CCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc-cCCCCCCCchHHHHHHHHHccC
Q psy12528        198 PFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       198 ~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      .|++|..++.++++|+|+|||++|++|.+....... ....+.+..|+.+.++|++++.
T Consensus      2053 ~ymvP~~~~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~ 2111 (3956)
T PRK12467       2053 EYMVPAHLVFLARMPLTPNGKLDRKALPAPDASELQQAYVAPQSELEQRLAAIWQDVLG 2111 (3956)
T ss_pred             hhhCchhhhhhhcCCCCCCCCcchhhCCCCccccccccccCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999876543322 3456788889999999999875

>PRK08315 AMP-binding domain protein; Validated

Probab=99.93  E-value=2.1e-24  Score=206.76  Aligned_cols=172  Identities=25%  Similarity=0.417  Sum_probs=147.1

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++++..++.++.|+..+.|...+.  ||+++++.+...|.        .++||+|||++++|++|.++++||.|+
T Consensus       382 v~i~d~~~~~~~~~g~~GEl~v~g~~~~~--gy~~~~~~~~~~~~--------~~~~~~TGD~~~~~~dg~~~~~GR~d~  451 (559)
T PRK08315        382 VKIVDPETGETVPRGEQGELCTRGYSVMK--GYWNDPEKTAEAID--------ADGWMHTGDLAVMDEEGYVNIVGRIKD  451 (559)
T ss_pred             EEEEcCccCCcCCCCCceEEEEECchhhh--hhcCChhHHhhcCC--------CCCCEEccceEEEcCCceEEEEeeccc
Confidence            35556665677776766766666666665  99999998877663        378999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +++++|.++         +|.    +||+.|.++++|.+++|+++++...++.++++|++..+...+.   +++++++++
T Consensus       452 ~i~~~G~~v---------~~~----eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~  515 (559)
T PRK08315        452 MIIRGGENI---------YPR----EIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTE---EDVRDFCRG  515 (559)
T ss_pred             eEEECCEEE---------cHH----HHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCH---HHHHHHHHh
Confidence            999999999         999    9999999999999999999988776778888888776544443   689999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +++.+++|..+++++++|+|.+||++|.+|++++....
T Consensus       516 ~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~  553 (559)
T PRK08315        516 KIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEEL  553 (559)
T ss_pred             hcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhh
Confidence            99999999999999999999999999999999877654

>PRK12583 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=3e-24  Score=205.50  Aligned_cols=170  Identities=22%  Similarity=0.393  Sum_probs=145.1

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++ +..++.+..|+..+.|...+.  ||++++..+...|.        .++||+|||++++|++|++++.||.||
T Consensus       384 ~~i~d~~-~~~~~~g~~Gel~v~g~~~~~--gy~~~~~~~~~~~~--------~~~~~~TGDl~~~~~dg~l~i~GR~~~  452 (558)
T PRK12583        384 VKVVDPD-GATVPRGEIGELCTRGYSVMK--GYWNNPEATAESID--------EDGWMHTGDLATMDEQGYVRIVGRSKD  452 (558)
T ss_pred             EEEECCC-CCCCCCCCeeEEEEEeCccch--hhcCChHHHHhhcC--------CCCCeeccceEEECCCccEEEEecccc
Confidence            3555555 566666666666666665555  99999999877663        368999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +|+++|.++         +|.    +||+.+.++|+|.+++|+++++...++.++++++..+....+.   .++++.+++
T Consensus       453 ~i~~~G~~v---------~~~----~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~i~~~~~~  516 (558)
T PRK12583        453 MIIRGGENI---------YPR----EIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASE---EELREFCKA  516 (558)
T ss_pred             eeEECCEEe---------CHH----HHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCH---HHHHHHHHh
Confidence            999999999         999    9999999999999999999998877788889998876544432   689999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      +|+.+++|..++.++++|+|.+||++|+.|++++.++
T Consensus       517 ~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~  553 (558)
T PRK12583        517 RIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEE  553 (558)
T ss_pred             hcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhh
Confidence            9999999999999999999999999999999987654

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.93  E-value=5.1e-25  Score=214.29  Aligned_cols=178  Identities=20%  Similarity=0.266  Sum_probs=135.6

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCc----------CcCCCCeeecCceEEEccCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNF----------SFTTNNSDLLLSSARRDEDG  104 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~----------~~~~~~w~~TGDl~~~d~~G  104 (258)
                      +.|.+++++..++.++.|+..+.|+..+.  ||+++++.+++.|......          ....++||+|||+|++ +||
T Consensus       413 v~ivd~~~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG  489 (612)
T PRK12476        413 AVIVDPDTGAELPDGEVGEIWLHGDNIGR--GYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDG  489 (612)
T ss_pred             EEEEeCCCCcCCCCCCEEEEEEcCCcccc--cccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECC
Confidence            34555555777777777777777766665  9999999999888521100          0123579999999998 499


Q ss_pred             cEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHH-cCCCcce--EEEEeeeCCCCCcEEEEEEEeCCCCC-c
Q psy12528        105 YLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLA-SHPDVSE--AAVVSRPHPVKGECLYCFITPAGGAT-F  180 (258)
Q Consensus       105 ~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~-~~~~v~~--a~vv~~~~~~~~~~~~~~v~~~~~~~-~  180 (258)
                      +|+|+||.||+||++|++|         +|.    +||+.|. .||.|.+  ++++++++.. ++.+++++++.++.. .
T Consensus       490 ~l~i~GR~~d~I~~~G~~I---------~p~----eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~  555 (612)
T PRK12476        490 ELYITGRIADLIVIDGRNH---------YPQ----DIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRA  555 (612)
T ss_pred             EEEEEeccCcEEEECCccc---------CHH----HHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccc
Confidence            9999999999999999999         999    9999998 5899998  6777887776 778889988876532 2


Q ss_pred             cHHHHHHHHHHHHHhcC-CCCC-CcEEEECC--CCCCCCCCcccHHHHHHHHhccc
Q psy12528        181 NQELVKQLKQQVREKIG-PFAM-PDVIQHAP--RLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       181 ~~~~~~~l~~~l~~~l~-~~~~-p~~~~~~~--~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +.   +++.+.+++++. .+++ |..+.+++  +||+|++|||+|++|++++.+..
T Consensus       556 ~~---~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~~~  608 (612)
T PRK12476        556 DP---APAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLDGR  608 (612)
T ss_pred             cH---HHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHcCC
Confidence            22   345555555554 3666 57777776  59999999999999999987654

>PRK06188 acyl-CoA synthetase; Validated

Probab=99.93  E-value=1.5e-24  Score=206.39  Aligned_cols=163  Identities=26%  Similarity=0.372  Sum_probs=138.9

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|+..+  .||++++..+...+.         +|||+|||+++++++|++++.||.+++++++|.+
T Consensus       357 ~~~~~~g~~Gel~v~~~~~~--~gy~~~~~~~~~~~~---------~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~  425 (524)
T PRK06188        357 GREVAQGEVGEICVRGPLVM--DGYWNRPEETAEAFR---------DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFN  425 (524)
T ss_pred             CCCCCCCCeeEEEEECcchh--hhhcCChHHhhhhhc---------CCceeecceEEEcCCccEEEEeccccceecCCEE
Confidence            44455555555555554444  499999998877774         6899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||++|.++++|.+++|++.++...++.+++++++......+   .+++++++++.++.++.|
T Consensus       426 i---------~~~----~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p  489 (524)
T PRK06188        426 V---------FPR----EVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVD---AAELQAHVKERKGSVHAP  489 (524)
T ss_pred             E---------CHH----HHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCC
Confidence            9         999    999999999999999999998877788888988887654444   268999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ..++.++++|+|++||++|++|++.+.+..
T Consensus       490 ~~i~~v~~~P~t~~gKi~r~~L~~~~~~~~  519 (524)
T PRK06188        490 KQVDFVDSLPLTALGKPDKKALRARYWEGR  519 (524)
T ss_pred             cEEEEecCCCCCccccccHHHHHHHHHhhc
Confidence            999999999999999999999999986553

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=99.93  E-value=1e-24  Score=207.98  Aligned_cols=156  Identities=27%  Similarity=0.420  Sum_probs=135.3

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|+..+.  ||+++++.+...|.        .+|||+|||++++|++|+++++||.||+|+++|.+
T Consensus       371 g~~~~~g~~Gei~v~g~~~~~--gY~~~~~~~~~~~~--------~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~  440 (527)
T TIGR02275       371 GNPVAPGETGMLLTRGPYTFR--GYYKAPEHNAAAFD--------AEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEK  440 (527)
T ss_pred             CCCCCCCCceEEEecCCccch--hhcCChhHhHhhcC--------cCCCEEcCceEEEcCCccEEEEecccceeecCCEE
Confidence            555555666666666666555  99999999988875        46899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh-cCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK-IGPFAM  201 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~  201 (258)
                      +         +|.    +||+.|.+||+|.+++|++.++...++.++++++...+. .+.   .+++++++++ ++.+++
T Consensus       441 v---------~~~----eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~-~~~---~~l~~~l~~~~l~~~~~  503 (527)
T TIGR02275       441 I---------AAE----EIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPA-LKA---AQLRRFLRERGLAEYKL  503 (527)
T ss_pred             E---------CHH----HHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCC-CCH---HHHHHHHHhCCCccccC
Confidence            9         999    999999999999999999999887788889998876653 232   6889999886 999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHH
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLR  225 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~  225 (258)
                      |..+.+++++|+|++||++|+.|+
T Consensus       504 P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       504 PDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             CCEEEEeccCCCCCccceeHHhcC
Confidence            999999999999999999999874

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=99.93  E-value=1.5e-24  Score=207.51  Aligned_cols=162  Identities=27%  Similarity=0.362  Sum_probs=141.3

Q ss_pred             CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      +++.++.++.|+....|+..+.  ||+++++.++..|.        .++||+|||++++|++|+++++||.+|+++++|.
T Consensus       371 ~~~~~~~g~~Gel~v~g~~~~~--GY~~~~~~t~~~~~--------~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~  440 (536)
T PRK10946        371 DGNPLPQGEVGRLMTRGPYTFR--GYYKSPQHNASAFD--------ANGFYCSGDLVSIDPDGYITVVGREKDQINRGGE  440 (536)
T ss_pred             CCCCCCCCCccEEEEecCccch--hhcCCcccchhhcc--------cCCceecCceEEECCCCcEEEeccccceeecCCE
Confidence            4566666666766666666665  99999999988774        4689999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh-cCCCC
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK-IGPFA  200 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~  200 (258)
                      ++         +|.    +||+.|.+||+|.++++++.++...++.+++++++.+.  .+.   .++++++++. ++.++
T Consensus       441 ~v---------~~~----eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~---~~l~~~~~~~~l~~~~  502 (536)
T PRK10946        441 KI---------AAE----EIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKA---VQLRRFLREQGIAEFK  502 (536)
T ss_pred             EE---------cHH----HHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCH---HHHHHHHHhCCccccc
Confidence            99         999    99999999999999999999988778888898887654  232   5788899886 99999


Q ss_pred             CCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        201 MPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       201 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      +|..+.+++++|+|++||++|+.|++++.+.
T Consensus       503 ~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~  533 (536)
T PRK10946        503 LPDRVECVDSLPLTAVGKVDKKQLRQWLASR  533 (536)
T ss_pred             cCcEEEEeccCCCCCCCcccHHHHHHHHHhh
Confidence            9999999999999999999999999987665

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.93  E-value=4e-25  Score=207.17  Aligned_cols=178  Identities=17%  Similarity=0.189  Sum_probs=140.9

Q ss_pred             ceecCCCCCceEEEEeCCC-----CCcCCCC----CCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeec
Q psy12528         24 FTVLGQVTVPQISILEPRL-----GDDLNLT----LSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLL   94 (258)
Q Consensus        24 ~~~yG~te~~~~~i~~~~~-----g~~~~~~----~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~T   94 (258)
                      ++.||+||++.........     |..++..    ..|+....|...+.  ||+++++.+...         ..+|||+|
T Consensus       268 ~~~YG~tE~~~~~~~~~~~~~~~~G~~~~~~~~~i~~gel~v~g~~~~~--gY~~~~~~~~~~---------~~~~~~~T  336 (458)
T PRK09029        268 WCGYGLTEMASTVCAKRADGLAGVGSPLPGREVKLVDGEIWLRGASLAL--GYWRQGQLVPLV---------NDEGWFAT  336 (458)
T ss_pred             eccccccccCcceeccCCCCCCCCCCCCCCCEEEEeCCEEEEecCceee--eeecCccccccc---------cCCCccCC
Confidence            5779999977543322211     2111110    11333444444444  899888776422         23689999


Q ss_pred             CceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEe
Q psy12528         95 LSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITP  174 (258)
Q Consensus        95 GDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~  174 (258)
                      ||++++| +|+++++||.||+||++|.++         +|.    +||+.|.+||.|.+++|++.+++..++.++++++.
T Consensus       337 GD~~~~~-~g~l~~~gR~~d~i~~~G~~v---------~p~----eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~  402 (458)
T PRK09029        337 RDRGEWQ-NGELTILGRLDNLFFSGGEGI---------QPE----EIERVINQHPLVQQVFVVPVADAEFGQRPVAVVES  402 (458)
T ss_pred             CCcEEEe-CCEEEEecccccceeeCCEEe---------CHH----HHHHHHhcCCCcceEEEEccCCcccCceEEEEEEc
Confidence            9999999 999999999999999999999         999    99999999999999999999998888889998886


Q ss_pred             CCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        175 AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       175 ~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ...  ..   .++++++++++++++++|..++.++++|+|.+||++|+.|++++.+.
T Consensus       403 ~~~--~~---~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        403 DSE--AA---VVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             Ccc--cC---HHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhc
Confidence            632  22   36899999999999999999999999999999999999999998865

>PRK13382 acyl-CoA synthetase; Provisional

Probab=99.93  E-value=6.7e-25  Score=210.12  Aligned_cols=154  Identities=29%  Similarity=0.382  Sum_probs=128.5

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      ++.++.+..|+..+.|+..+.  ||+  ++.+.. +         .+|||+|||++++|++|+++++||.||+||++|.+
T Consensus       383 ~~~~~~g~~GEl~v~g~~~~~--gY~--~~~~~~-~---------~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~  448 (537)
T PRK13382        383 FREVPTGEVGTIFVRNDTQFD--GYT--SGSTKD-F---------HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGEN  448 (537)
T ss_pred             CCCCCCCCeeEEEEEcCCccc--Ccc--ccchhh-c---------cCCCEeeCceEEEeCCCcEEEeccccceeEECCEE
Confidence            455555555555555554554  886  343432 1         25899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||..|.+||+|.+++|++.++...++.+++++++.++....   .++++++++++++.+++|
T Consensus       449 v---------~~~----eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~P  512 (537)
T PRK13382        449 V---------YPI----EVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASAT---PETLKQHVRDNLANYKVP  512 (537)
T ss_pred             E---------CHH----HHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCC---HHHHHHHHHHhccCCCCC
Confidence            9         999    999999999999999999999887788899999887654444   268999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHH
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRK  226 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~  226 (258)
                      ..+++++++|+|++||++|++|++
T Consensus       513 ~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        513 RDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             cEEEEeccCCCCCCCCCcHHhhCC
Confidence            999999999999999999999864

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=7.9e-25  Score=225.52  Aligned_cols=170  Identities=22%  Similarity=0.274  Sum_probs=142.3

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+|+++++++.++.|+....|+..+.  ||+++++.++..+.+.     ..++||+|||++++|+||+++++||.||
T Consensus       971 v~i~d~~~~~~~~~g~~Gel~v~g~~~~~--gY~~~~~~t~~~~~~~-----~~~~~~~TGD~~~~~~~g~l~~~gR~~d 1043 (1146)
T PRK08633        971 VRIVDPETFEELPPGEDGLILIGGPQVMK--GYLGDPEKTAEVIKDI-----DGIGWYVTGDKGHLDEDGFLTITDRYSR 1043 (1146)
T ss_pred             EEEEcCCCCccCCCCCceEEEEcCCCccc--cccCCccchHHHhhcC-----CCCCeEECCCEEEEcCCceEEEEecccc
Confidence            35556666777777777776666666665  9999999998888632     2469999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCC--CcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHP--DVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV  192 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~--~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l  192 (258)
                      +||++|+++         +|.    |||+.+.+||  .+.++++++++++..++.++++++...   .+.   +++++.+
T Consensus      1044 ~i~~~G~~v---------~~~----eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~---~~~---~~l~~~~ 1104 (1146)
T PRK08633       1044 FAKIGGEMV---------PLG----AVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGA---EDV---EELKRAI 1104 (1146)
T ss_pred             hhhhCcEEE---------CHH----HHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCc---cCH---HHHHHHH
Confidence            999999999         999    9999999999  466799999999888888888887621   222   5677777


Q ss_pred             HH-hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        193 RE-KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       193 ~~-~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      .+ +++.+++|..++.++++|+|++||++|++|++++.+
T Consensus      1105 ~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633       1105 KESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred             HhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHH
Confidence            65 599999999999999999999999999999988654

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=2.3e-24  Score=206.45  Aligned_cols=164  Identities=24%  Similarity=0.359  Sum_probs=139.6

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|+..+  .||+++++.+...|.         ++||+|||+++++++|.++++||.||+|+++|.+
T Consensus       363 ~~~~~~g~~Gel~v~g~~~~--~gy~~~~~~~~~~f~---------~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~  431 (542)
T PRK07786        363 MNDVPVGEVGEIVYRAPTLM--SGYWNNPEATAEAFA---------GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGEN  431 (542)
T ss_pred             CCCCcCCCceEEEEEChhhh--hhhcCCHHHHHHHhh---------CCcccccceEEEcCCceEEEEecccceEEeCCEE
Confidence            34445455555555555444  499999999988875         5899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC-ccHHHHHHHHHHHHHhcCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT-FNQELVKQLKQQVREKIGPFAM  201 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~  201 (258)
                      +         +|.    +||+.|.+||.|.+++|++.++...++.+++++.+..... ..   .+++.+.+++++++++.
T Consensus       432 v---------~~~----eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~l~~~l~~~~~  495 (542)
T PRK07786        432 I---------YCA----EVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALT---LEDLAEFLTDRLARYKH  495 (542)
T ss_pred             E---------CHH----HHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCC---HHHHHHHHHhhccCCCC
Confidence            9         999    9999999999999999999887777778888888765432 22   36899999999999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE  233 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~  233 (258)
                      |..+++++++|+|++||++|++|++++.+...
T Consensus       496 P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~  527 (542)
T PRK07786        496 PKALEIVDALPRNPAGKVLKTELRERYGACVN  527 (542)
T ss_pred             CCEEEEeccCCCCCcccccHHHHHHHHHhhhc
Confidence            99999999999999999999999999988764

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.92  E-value=3.8e-24  Score=201.74  Aligned_cols=166  Identities=22%  Similarity=0.285  Sum_probs=134.7

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|...+  .||+++++.+...|...     .+.+||+|||++++ .+|++++.||.||+|+++|.+
T Consensus       336 ~~~~~~g~~Gel~v~~~~~~--~gy~~~~~~~~~~~~~~-----~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~  407 (503)
T PRK04813        336 GTKLPDGEQGEIVISGPSVS--KGYLNNPEKTAEAFFTF-----DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYR  407 (503)
T ss_pred             CCCCCCCCceEEEEeccccc--cccCCChhHhHHhhccC-----CCceeEECCceEEe-eCCeEEEeccccceEEECcEE
Confidence            34444444444333343333  59999999988776421     23469999999999 999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC-CccHHHHHHHHHHHHHhcCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA-TFNQELVKQLKQQVREKIGPFAM  201 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~  201 (258)
                      +         +|.    +||+.+.++|+|.++++++.++...++.+++++++..+. .....+.+++++.++++++.+++
T Consensus       408 v---------~~~----~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  474 (503)
T PRK04813        408 I---------ELE----EIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMI  474 (503)
T ss_pred             e---------CHH----HHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccC
Confidence            9         999    999999999999999999987766677888888876542 22334557899999999999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHHHHHh
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLRKVAV  229 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~~~~~  229 (258)
                      |..++.++++|+|.+||++|++|++.+.
T Consensus       475 P~~i~~~~~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        475 PRKFIYRDSLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             CeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence            9999999999999999999999998864

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.92  E-value=2.5e-24  Score=203.71  Aligned_cols=167  Identities=25%  Similarity=0.366  Sum_probs=138.0

Q ss_pred             CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCC---cCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE
Q psy12528         42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNN---FSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV  118 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~---~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~  118 (258)
                      ++..++.+..|+....|...+.  ||+++++.+...|.....   +.....+||+|||++++|++|+++++||.||+|+.
T Consensus       345 ~~~~~~~~~~Gel~v~g~~~~~--gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~  422 (515)
T TIGR03098       345 DGSECAPGEEGELVHRGALVAM--GYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKT  422 (515)
T ss_pred             CCCCCCCCCceEEEEcCchhhc--cccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceec
Confidence            3555555555555555555555  999999998877753221   22234579999999999999999999999999999


Q ss_pred             CcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCC
Q psy12528        119 SGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGP  198 (258)
Q Consensus       119 ~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~  198 (258)
                      +|.++         +|.    +||+.+.++|.|.+++|++.+++..++.++++++.......+.   .++++++++++++
T Consensus       423 ~G~~v---------~~~----eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~---~~l~~~l~~~l~~  486 (515)
T TIGR03098       423 SGYRV---------SPT----EVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDR---AALLAECRARLPN  486 (515)
T ss_pred             CCEEe---------CHH----HHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCH---HHHHHHHHhhCcc
Confidence            99999         999    9999999999999999999998888888888888655444442   6899999999999


Q ss_pred             CCCCcEEEECCCCCCCCCCcccHHHHHH
Q psy12528        199 FAMPDVIQHAPRLPKTRSGKIMRRVLRK  226 (258)
Q Consensus       199 ~~~p~~~~~~~~lP~t~~GKi~r~~l~~  226 (258)
                      +++|..+++++++|+|.+||++|++|++
T Consensus       487 ~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       487 YMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             ccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence            9999999999999999999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.92  E-value=6.8e-25  Score=215.01  Aligned_cols=154  Identities=10%  Similarity=0.104  Sum_probs=123.0

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE-CcEEEEeeeccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV-SGHLMTVYFFGS  130 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~-~G~~v~~~~~~~  130 (258)
                      |+..+.|+.++.  ||+++++.++..|.        .+|||+|||+|++|+||+|+|+||.||+||+ +|++|       
T Consensus       459 GEl~vrgp~v~~--GY~~~~~~t~~~~~--------~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V-------  521 (651)
T PLN02736        459 GEICVRGPIIFK--GYYKDEVQTREVID--------EDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYI-------  521 (651)
T ss_pred             ceEEecCCcccc--ccccCHHHHHhhhc--------cCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEe-------
Confidence            455555555555  99999999998884        4799999999999999999999999999997 69999       


Q ss_pred             ccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC--------Cc----------cHHHHHHHHHHH
Q psy12528        131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA--------TF----------NQELVKQLKQQV  192 (258)
Q Consensus       131 ~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~--------~~----------~~~~~~~l~~~l  192 (258)
                        +|.    +||+.|.+||.|.+|+|++.   ..++.++|+|++....        ..          ++++.+.+.+.+
T Consensus       522 --~p~----eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  592 (651)
T PLN02736        522 --APE----KIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADM  592 (651)
T ss_pred             --chH----HHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHH
Confidence              999    99999999999999999983   2466889999876421        11          111122222222


Q ss_pred             H-----HhcCCCCCCcEEEECCCCC------CCCCCcccHHHHHHHHhcc
Q psy12528        193 R-----EKIGPFAMPDVIQHAPRLP------KTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       193 ~-----~~l~~~~~p~~~~~~~~lP------~t~~GKi~r~~l~~~~~~~  231 (258)
                      +     .+|+.+++|+.|.++++.|      +|++||++|+.+++.+.+.
T Consensus       593 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~  642 (651)
T PLN02736        593 DAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKA  642 (651)
T ss_pred             HHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHH
Confidence            2     2599999999999999986      6999999999999988765

>PLN02479 acetate-CoA ligase

Probab=99.92  E-value=1.5e-24  Score=209.08  Aligned_cols=157  Identities=27%  Similarity=0.378  Sum_probs=133.8

Q ss_pred             CCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeeccc
Q psy12528         51 SMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS  130 (258)
Q Consensus        51 ~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~  130 (258)
                      .|+..+.|...+  .||+++++.++..|.         ++||+|||++++|++|+++++||.||+||++|.++       
T Consensus       402 ~GEl~v~g~~~~--~GY~~~~~~t~~~~~---------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v-------  463 (567)
T PLN02479        402 MGEIVMRGNMVM--KGYLKNPKANEEAFA---------NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENI-------  463 (567)
T ss_pred             ceEEEEeccchh--hhhhcCcccccchhc---------CCceecceeEEEcCCccEEEeccccceEEeCCEEE-------
Confidence            345555555444  599999999887774         68999999999999999999999999999999999       


Q ss_pred             ccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc--HHHHHHHHHHHHHhcCCCCCCcEEEEC
Q psy12528        131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN--QELVKQLKQQVREKIGPFAMPDVIQHA  208 (258)
Q Consensus       131 ~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~p~~~~~~  208 (258)
                        +|.    +||..|..||.|.+++|++.++...++.+++++++..+...+  ..+.+++.+++++++++++.|..+.+ 
T Consensus       464 --~~~----eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-  536 (567)
T PLN02479        464 --SSL----EVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-  536 (567)
T ss_pred             --cHH----HHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-
Confidence              999    999999999999999999998777778889999887654221  23456899999999999999998876 


Q ss_pred             CCCCCCCCCcccHHHHHHHHhccc
Q psy12528        209 PRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       209 ~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +++|+|.+||++|+.|++.+..+.
T Consensus       537 ~~iP~t~~gKv~r~~L~~~~~~~~  560 (567)
T PLN02479        537 GPLPKTATGKIQKHVLRAKAKEMG  560 (567)
T ss_pred             ccCCCCCccCeeHHHHHHHHHhhC
Confidence            679999999999999999877754

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.92  E-value=1.5e-24  Score=208.08  Aligned_cols=160  Identities=28%  Similarity=0.409  Sum_probs=134.5

Q ss_pred             CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      .+..++.+..|+..+.|...+  .||+++++.++..|.        .+|||+|||++++|++|+++++||.+|+|+++|.
T Consensus       399 ~~~~~~~g~~Gel~v~~~~~~--~gy~~~~~~~~~~~~--------~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~  468 (560)
T PRK08751        399 AGTVLAIGEIGELCIKGPQVM--KGYWKRPEETAKVMD--------ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGF  468 (560)
T ss_pred             CCCCCCCCCceEEEEecCccc--hhhcCChhhhhhccc--------cCCCccccceEEEcCCceEEEEeechhheeECCE
Confidence            345555555555555555444  499999999987774        4689999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCC
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM  201 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  201 (258)
                      ++         +|.    +||+.|..+++|.+++++++++...++.+.++++.... ..+.   +++++.++++++.++.
T Consensus       469 ~v---------~p~----eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~-~~~~---~~l~~~~~~~l~~~~~  531 (560)
T PRK08751        469 NV---------YPN----EIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDP-ALTA---EDVKAHARANLTGYKQ  531 (560)
T ss_pred             EE---------cHH----HHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCC-CCCH---HHHHHHHHHhhhhccC
Confidence            99         999    99999999999999999999887777777777765432 2232   5788999999999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHHHHH
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLRKVA  228 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~~~~  228 (258)
                      |..+++++++|+|.+||++|+.|++..
T Consensus       532 P~~v~~v~~lP~t~~gKv~r~~L~~~~  558 (560)
T PRK08751        532 PRIIEFRKELPKTNVGKILRRELRDAA  558 (560)
T ss_pred             CeEEEEhhhCCCCccccccHHHHHHhh
Confidence            999999999999999999999998773

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=2.4e-24  Score=203.52  Aligned_cols=157  Identities=28%  Similarity=0.450  Sum_probs=131.8

Q ss_pred             CcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEE
Q psy12528         44 DDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLM  123 (258)
Q Consensus        44 ~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v  123 (258)
                      ..++.+..|+..+.|....  .||++++..+...+.        .++||+|||+++++++|.++++||.||+++++|.++
T Consensus       356 ~~~~~g~~Gel~v~~~~~~--~gy~~~~~~~~~~~~--------~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v  425 (513)
T PRK07656        356 EEVPVGEVGELLVRGPNVM--KGYYDDPEATAAAID--------ADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNV  425 (513)
T ss_pred             CCCCCCCceEEEEEcchhh--hhhcCCHHHHhhhhc--------cCCceeccceEEEcCCeeEEEEecccceEEeCCEEe
Confidence            3333334344334443333  599999988877663        478999999999999999999999999999999999


Q ss_pred             EeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCc
Q psy12528        124 TVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPD  203 (258)
Q Consensus       124 ~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~  203 (258)
                               +|.    +||+.|.++++|.++++++.++...++.++++++.......+.   +++.++++++++++++|.
T Consensus       426 ---------~~~----~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p~  489 (513)
T PRK07656        426 ---------YPA----EVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTE---EELIAYCREHLAKYKVPR  489 (513)
T ss_pred             ---------CHH----HHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCH---HHHHHHHHhhcccccCCC
Confidence                     999    9999999999999999999988877888889998875444443   578899999999999999


Q ss_pred             EEEECCCCCCCCCCcccHHHHHH
Q psy12528        204 VIQHAPRLPKTRSGKIMRRVLRK  226 (258)
Q Consensus       204 ~~~~~~~lP~t~~GKi~r~~l~~  226 (258)
                      .++.++++|+|++||++|+.|++
T Consensus       490 ~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        490 SIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             EEEEecCCCCCCccceeHHHHhc
Confidence            99999999999999999999975

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.92  E-value=2.4e-24  Score=202.52  Aligned_cols=158  Identities=24%  Similarity=0.379  Sum_probs=134.9

Q ss_pred             CcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEE
Q psy12528         44 DDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLM  123 (258)
Q Consensus        44 ~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v  123 (258)
                      .+++.+..|+..+.|+..+.  ||+++++.++..|.         ++||+|||++++++||++++.||.||++|++|.++
T Consensus       325 ~~~~~g~~Gel~v~g~~~~~--gy~~~~~~~~~~~~---------~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v  393 (483)
T PRK03640        325 VVVPPFEEGEIVVKGPNVTK--GYLNREDATRETFQ---------DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENI  393 (483)
T ss_pred             CcCCCCCceEEEEECcchhh--hhcCCHHHHHHHHh---------cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEE
Confidence            44555555555556665555  99999999888774         68999999999999999999999999999999999


Q ss_pred             EeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCc
Q psy12528        124 TVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPD  203 (258)
Q Consensus       124 ~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~  203 (258)
                               +|.    +||+.+.++++|.++++++.+++..+..++++++....  .+.   +++++.++++++.+++|.
T Consensus       394 ---------~~~----~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~~~~~l~~~~~p~  455 (483)
T PRK03640        394 ---------YPA----EIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE--VTE---EELRHFCEEKLAKYKVPK  455 (483)
T ss_pred             ---------CHH----HHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCC--CCH---HHHHHHHHHhccCCCCCc
Confidence                     999    99999999999999999998887767777777775432  232   578899999999999999


Q ss_pred             EEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        204 VIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       204 ~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      .++.++++|+|++||++|++|++++.+
T Consensus       456 ~i~~~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        456 RFYFVEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             EEEEeCCCCCCCccceeHHHHHHHHhh
Confidence            999999999999999999999998764

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.92  E-value=2.2e-24  Score=203.02  Aligned_cols=148  Identities=22%  Similarity=0.331  Sum_probs=127.8

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC-CCeeEECcEEEEeeeccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV-DDMLNVSGHLMTVYFFGS  130 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~-~d~i~~~G~~v~~~~~~~  130 (258)
                      |+....|...+  .||+++++.+...|.        .++||+|||++++|+||+++++||. |++++++|.++       
T Consensus       322 Gei~v~g~~~~--~gy~~~~~~t~~~~~--------~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v-------  384 (471)
T PRK07787        322 GELQVRGPTLF--DGYLNRPDATAAAFT--------ADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRI-------  384 (471)
T ss_pred             eEEEEECcccc--hhhcCChhhchhccc--------CCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEE-------
Confidence            44444444444  599999999987774        4689999999999999999999996 89999999999       


Q ss_pred             ccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCC
Q psy12528        131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR  210 (258)
Q Consensus       131 ~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~  210 (258)
                        +|.    +||+.|.+++.|.+++|++.++...++.++++++....  .+   .+++.++++++++++++|..++++++
T Consensus       385 --~~~----eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~--~~---~~~l~~~l~~~l~~~~~P~~i~~~~~  453 (471)
T PRK07787        385 --GAG----EIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADD--VA---ADELIDFVAQQLSVHKRPREVRFVDA  453 (471)
T ss_pred             --CHH----HHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCC--CC---HHHHHHHHHhhcccccCCcEEEEecc
Confidence              999    99999999999999999999887778899999887432  22   25789999999999999999999999


Q ss_pred             CCCCCCCcccHHHHHHH
Q psy12528        211 LPKTRSGKIMRRVLRKV  227 (258)
Q Consensus       211 lP~t~~GKi~r~~l~~~  227 (258)
                      +|+|.+||++|+.|+++
T Consensus       454 iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        454 LPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             CCCCCCccccHHHhccC
Confidence            99999999999999753

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=99.92  E-value=1.7e-24  Score=206.90  Aligned_cols=155  Identities=23%  Similarity=0.339  Sum_probs=130.9

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|...+  .||+++++.++.          ..++||+|||++++|++|+++++||.||+|+++|.+
T Consensus       382 ~~~~~~g~~Gel~v~g~~~~--~gy~~~~~~~~~----------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~  449 (538)
T TIGR03208       382 GAKLSQGETGRLLVRGCSNF--GGYLKRPHLNST----------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGEN  449 (538)
T ss_pred             CCCCcCCCCcEEEEecCccc--ccccCCcccccc----------cCCCceeccceEEECCCCcEEEEeccCceEEECCEE
Confidence            44455555565555555544  499999876641          247899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH-hcCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE-KIGPFAM  201 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~  201 (258)
                      +         +|.    +||+.|.+||+|.+++|++.++...++.+++++++..+...+.   +++.+++++ +++.+++
T Consensus       450 v---------~p~----eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~~~l~~~~~  513 (538)
T TIGR03208       450 I---------PVV----EIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDF---AAMVAFLKAQKVALQYI  513 (538)
T ss_pred             E---------CHH----HHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCH---HHHHHHHHhcchhhccC
Confidence            9         999    9999999999999999999988877788999999876655453   578888886 6999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHH
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLR  225 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~  225 (258)
                      |..++.++++|+|++||++|++|+
T Consensus       514 P~~i~~v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       514 PERLEVVDALPATPAGKIQKFRLR  537 (538)
T ss_pred             CcEEEEeccCCCCCccccchHhhc
Confidence            999999999999999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK05691 peptide synthase; Validated

Probab=99.92  E-value=4e-24  Score=242.68  Aligned_cols=196  Identities=18%  Similarity=0.244  Sum_probs=156.7

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|..++.  ||+|+++.|+..|...+ +....++||+|||+|++++||.++++||.|++||++|++
T Consensus      2524 ~~~vp~G~~GEL~i~G~~v~~--GY~~~~~~t~~~F~~~p-~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~r 2600 (4334)
T PRK05691       2524 LALVPQGATGELYVGGAGLAQ--GYHDRPGLTAERFVADP-FAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFR 2600 (4334)
T ss_pred             CCCCCCCCceEEEecccccCc--cccCChhhhhhhccCCC-CCCCCCceEeccceEEEcCCCCEEEeecccCeEEeeeEE
Confidence            445555555555555555555  99999999999997443 322346899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC---ccHHHHHHHHHHHHHhcCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT---FNQELVKQLKQQVREKIGPF  199 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~l~~~l~~~l~~~  199 (258)
                      |         +|.    |||+.|.+||+|.+|+|++.... .++.++++++......   ......+.++++++++|+.|
T Consensus      2601 I---------e~~----EIE~~l~~~p~V~~a~V~~~~~~-~~~~lva~vv~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y 2666 (4334)
T PRK05691       2601 I---------ELG----EIESRLLEHPAVREAVVLALDTP-SGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDY 2666 (4334)
T ss_pred             e---------chH----HHHHHHHhCCCcceEEEEEeeCC-CCcEEEEEEEecccccccccccccHHHHHHHHHhhCccc
Confidence            9         999    99999999999999999988543 4667888887643211   11223468999999999999


Q ss_pred             CCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc-cCCCCCCCchHHHHHHHHHccC
Q psy12528        200 AMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       200 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      ++|..++.++++|+|++||++|++|++....... ....+.+..|+.+..+|+.+++
T Consensus      2667 mvP~~~~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~ 2723 (4334)
T PRK05691       2667 MVPAHLILLDSLPLTANGKLDRRALPAPDPELNRQAYQAPRSELEQQLAQIWREVLN 2723 (4334)
T ss_pred             cCChhheeecccCCCCCCcccHHhhcCccccccccCcCCCCChHHHHHHHHHHHHhC
Confidence            9999999999999999999999999875433322 3456778888999999999876

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.92  E-value=7.2e-24  Score=202.61  Aligned_cols=142  Identities=30%  Similarity=0.427  Sum_probs=127.5

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .||+++++.+...|.         ++||+|||++++|++|+++++||.||++|++|.++         +|.    +||..
T Consensus       400 ~gY~~~~~~~~~~~~---------~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v---------~~~----eIE~~  457 (545)
T PRK08162        400 KGYLKNPKATEEAFA---------GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENI---------SSI----EVEDV  457 (545)
T ss_pred             hhhcCChhhhHHHhh---------CCCcccCceEEEcCCccEEEEecccceEEeCCEEE---------CHH----HHHHH
Confidence            599999999988774         58999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVL  224 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l  224 (258)
                      |.++|+|.++++++.++...++.+++++++.++...+.   +++++.+++.++++++|..+++ +++|+|.+||++|+.|
T Consensus       458 l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l  533 (545)
T PRK08162        458 LYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATE---EEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVL  533 (545)
T ss_pred             HHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCH---HHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHH
Confidence            99999999999999988777788889998876654443   6899999999999999999875 6899999999999999


Q ss_pred             HHHHhccc
Q psy12528        225 RKVAVNDR  232 (258)
Q Consensus       225 ~~~~~~~~  232 (258)
                      ++.+.+..
T Consensus       534 ~~~~~~l~  541 (545)
T PRK08162        534 REQAKSLK  541 (545)
T ss_pred             HHHHhhhh
Confidence            99876654

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=6.2e-24  Score=203.41  Aligned_cols=150  Identities=22%  Similarity=0.323  Sum_probs=127.8

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSY  131 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~  131 (258)
                      |+....|+..+  .||+++++.   .+         .+|||+|||++++|+||+++++||.||+||++|.++        
T Consensus       385 Gei~v~g~~~~--~gy~~~~~~---~~---------~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v--------  442 (539)
T PRK07008        385 GDLQVRGPWVI--DRYFRGDAS---PL---------VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWI--------  442 (539)
T ss_pred             eEEEEeCCccc--hhhcCChhh---hh---------cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEE--------
Confidence            44444444443  589998732   12         158999999999999999999999999999999999        


Q ss_pred             cCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q psy12528        132 CSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL  211 (258)
Q Consensus       132 ~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~l  211 (258)
                       +|.    +||+.+..+|.|.++++++.++...++.++++++..++...+.   +.+++++++++++++.|..+++++++
T Consensus       443 -~p~----eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~P~~i~~v~~l  514 (539)
T PRK07008        443 -SSI----DIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTR---EELLAFYEGKVAKWWIPDDVVFVDAI  514 (539)
T ss_pred             -cHH----HHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCH---HHHHHHHHhhcccccCCeEEEEecCC
Confidence             999    9999999999999999999998777778888888766544443   68999999999999999999999999


Q ss_pred             CCCCCCcccHHHHHHHHhcc
Q psy12528        212 PKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       212 P~t~~GKi~r~~l~~~~~~~  231 (258)
                      |+|.+||++|++|++++.+.
T Consensus       515 P~t~sgKi~r~~l~~~~~~~  534 (539)
T PRK07008        515 PHTATGKLQKLKLREQFRDY  534 (539)
T ss_pred             CCCCccceeHHHHHHHHHhh
Confidence            99999999999999988765

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.92  E-value=4e-24  Score=211.77  Aligned_cols=126  Identities=24%  Similarity=0.303  Sum_probs=111.6

Q ss_pred             CCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcE
Q psy12528         88 TNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGEC  167 (258)
Q Consensus        88 ~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~  167 (258)
                      .+|||+|||++++|+||+++++||.||+||++|++|         +|.    +||+.+.+|+.+.++++++.++...++.
T Consensus       589 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V---------~p~----eIE~~l~~~~~~~~~avv~~~~~~~ge~  655 (718)
T PRK08043        589 ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV---------SLE----MVEQLALGVSPDKQHATAIKSDASKGEA  655 (718)
T ss_pred             cCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEc---------CHH----HHHHHHHhCCccceEEEEEccCCCCCce
Confidence            369999999999999999999999999999999999         999    9999999999888888888888877888


Q ss_pred             EEEEEEeCCCCCccHHHHHHHHHHHHHh-cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        168 LYCFITPAGGATFNQELVKQLKQQVREK-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       168 ~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +++++..   ...+.   ++++++++++ ++.+++|..+++++++|+|++||++|++|++++.+.+
T Consensus       656 ~v~~~~~---~~~~~---~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  715 (718)
T PRK08043        656 LVLFTTD---SELTR---EKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDEPE  715 (718)
T ss_pred             EEEEEcC---cccCH---HHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhccc
Confidence            8777642   22232   5788999887 9999999999999999999999999999999887754

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.92  E-value=2.1e-24  Score=220.62  Aligned_cols=150  Identities=16%  Similarity=0.167  Sum_probs=123.6

Q ss_pred             eEEeecccccccccCChHHH--hhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeeccccc
Q psy12528         55 TLVGRRAMKSLKFQNTSKVR--AQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYC  132 (258)
Q Consensus        55 ~~~G~~~~~~~gy~~~~~~~--~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~  132 (258)
                      +..|+....+..|.+ ++.+  ..+|.       ..+|||+|||++++|+||+|+|+||.||+||++|.+|         
T Consensus       807 ge~Gel~~~~~~~~~-p~~t~~~~~~~-------~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I---------  869 (994)
T PRK07868        807 NEVGVLLARARGPID-PTASVKRGVFA-------PADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPV---------  869 (994)
T ss_pred             CCceEEEEecCCCCC-hhhhhHhcccc-------cCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceE---------
Confidence            344555555544543 3332  22332       2479999999999999999999999999999999999         


Q ss_pred             CCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCC
Q psy12528        133 STAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLP  212 (258)
Q Consensus       133 ~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP  212 (258)
                      +|.    |||++|.+||.|.+|+|++++++. ++.++++|++.++...+.   ++|++++++ ++.+++|+.++++++||
T Consensus       870 ~p~----EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~~---~~L~~~l~~-l~~y~vP~~i~~v~~lP  940 (994)
T PRK07868        870 YTE----PVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAITA---ADLTEALAS-LPVGLGPDIVHVVPEIP  940 (994)
T ss_pred             cHH----HHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCCH---HHHHHHHHh-CCCCcCCeEEEEeCCCC
Confidence            999    999999999999999999998875 578889998877655553   578888875 89999999999999999


Q ss_pred             CCCCCcccHHHHHHHHhc
Q psy12528        213 KTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       213 ~t~~GKi~r~~l~~~~~~  230 (258)
                      +|++|||+|++|++....
T Consensus       941 ~T~sGKi~r~~L~~~~lp  958 (994)
T PRK07868        941 LSATYRPTVSALRAAGIP  958 (994)
T ss_pred             CCccccEehHHHHhcCCC
Confidence            999999999999877654

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.92  E-value=9.4e-24  Score=200.19  Aligned_cols=146  Identities=23%  Similarity=0.321  Sum_probs=130.0

Q ss_pred             cccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHH
Q psy12528         64 SLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEA  143 (258)
Q Consensus        64 ~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~  143 (258)
                      ..||+++++.++..|...     ...+||+|||++++|++|+++++||.|++++++|.++         +|.    +||+
T Consensus       387 ~~gy~~~~~~t~~~f~~~-----~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v---------~~~----eIE~  448 (533)
T PRK07798        387 PLGYYKDPEKTAETFPTI-----DGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKV---------FPE----EVEE  448 (533)
T ss_pred             cccccCChhhhHHhhccC-----CCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEe---------CHH----HHHH
Confidence            459999999998887531     2457999999999999999999999999999999999         999    9999


Q ss_pred             HHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHH
Q psy12528        144 CLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRV  223 (258)
Q Consensus       144 ~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~  223 (258)
                      .+.++|.|.++++++.++...++.+.+++++.++...+.   +++.+.++++++.+++|..++.++++|+|.+||++|+.
T Consensus       449 ~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~  525 (533)
T PRK07798        449 ALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDL---AELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRW  525 (533)
T ss_pred             HHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCH---HHHHHHHhhhcccCCCCeEEEEcccCCCCCcchhhHHH
Confidence            999999999999999988777788888888776554443   68999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy12528        224 LRKVAVN  230 (258)
Q Consensus       224 l~~~~~~  230 (258)
                      |++++++
T Consensus       526 ~~~~~~~  532 (533)
T PRK07798        526 AKEQAAE  532 (533)
T ss_pred             Hhhhhcc
Confidence            9998764

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.92  E-value=6.3e-24  Score=203.83  Aligned_cols=158  Identities=29%  Similarity=0.431  Sum_probs=134.3

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|+..+  .||+++++.+...|.        .+|||+|||+++++++|+++++||.+|+|+++|.+
T Consensus       398 ~~~~~~g~~Gel~v~g~~~~--~gY~~~~~~~~~~~~--------~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~  467 (557)
T PRK07059        398 GNDLPLGEPGEICIRGPQVM--AGYWNRPDETAKVMT--------ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFN  467 (557)
T ss_pred             CCCCCCCCceEEEEeCCccc--hhhhcCHHHHhhhcc--------cCCceecCcEEEEcCCCcEEEecccccceEECCEE
Confidence            45555555555555554444  499999999987764        47899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||+.+.++++|.++++++.++...++.+++++..... ..+.   ++++++++++++.+++|
T Consensus       468 i---------~p~----~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~-~~~~---~~l~~~~~~~l~~~~~P  530 (557)
T PRK07059        468 V---------YPN----EIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDP-ALTE---EDVKAFCKERLTNYKRP  530 (557)
T ss_pred             E---------cHH----HHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCC-CCCH---HHHHHHHHHhcccccCC
Confidence            9         999    99999999999999999999888778888888886543 2332   57889999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHH
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKV  227 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~  227 (258)
                      ..+.+++++|+|.+||++|+.|+++
T Consensus       531 ~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        531 KFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             cEEEEeccCCCCcccceeHHHHHhh
Confidence            9999999999999999999999764

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.91  E-value=1.1e-23  Score=199.84  Aligned_cols=142  Identities=29%  Similarity=0.474  Sum_probs=126.2

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .+|+++++.++..+         .++||+|||++++|++|++++.||.||+||++|.++         +|.    +||..
T Consensus       363 ~~y~~~~~~~~~~~---------~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v---------~~~----~IE~~  420 (509)
T PRK12406        363 FTYHNKPEKRAEID---------RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNI---------YPA----EIEAV  420 (509)
T ss_pred             ccccCCchhccccc---------CCCCeEEccEEEEcCCceEEEeecccceEEECCEEE---------CHH----HHHHH
Confidence            48999988886544         368999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVL  224 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l  224 (258)
                      |.++|+|.++++++.++...++.+++++++........   +++++.++++++.+++|..++.++++|+|.+||++|++|
T Consensus       421 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L  497 (509)
T PRK12406        421 LHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDE---ADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRL  497 (509)
T ss_pred             HHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCH---HHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHH
Confidence            99999999999999988777788888888876543332   688999999999999999999999999999999999999


Q ss_pred             HHHHhcc
Q psy12528        225 RKVAVND  231 (258)
Q Consensus       225 ~~~~~~~  231 (258)
                      ++.+...
T Consensus       498 ~~~~~~~  504 (509)
T PRK12406        498 RDPYWAN  504 (509)
T ss_pred             HHHHHhh
Confidence            9877654

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.91  E-value=2.4e-23  Score=196.63  Aligned_cols=142  Identities=30%  Similarity=0.477  Sum_probs=129.0

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .+|+++++.+...|.         ++||+|||+++++++|.+++.||.+|++|++|.++         +|.    +||+.
T Consensus       379 ~~y~~~~~~~~~~~~---------~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v---------~~~----~IE~~  436 (521)
T PRK06187        379 QGYWNRPEATAETID---------GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENI---------YPR----ELEDA  436 (521)
T ss_pred             hhhcCCHHHHHHHhh---------CCceeccceEEEcCCCCEEEeecccceEEcCCeEE---------CHH----HHHHH
Confidence            589999988887775         46999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVL  224 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l  224 (258)
                      |.++++|.++++++.++...++.+++++++..+...+.   ..+.+.++++++.+++|..+++++++|+|++||++|..|
T Consensus       437 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l  513 (521)
T PRK06187        437 LYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDA---KELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVL  513 (521)
T ss_pred             HHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCH---HHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHH
Confidence            99999999999999988777889999998876654443   678899999999999999999999999999999999999


Q ss_pred             HHHHhcc
Q psy12528        225 RKVAVND  231 (258)
Q Consensus       225 ~~~~~~~  231 (258)
                      ++++.+.
T Consensus       514 ~~~~~~~  520 (521)
T PRK06187        514 REQYAEG  520 (521)
T ss_pred             HHHHhcC
Confidence            9998764

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.91  E-value=1.7e-23  Score=200.24  Aligned_cols=165  Identities=24%  Similarity=0.357  Sum_probs=138.9

Q ss_pred             CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      .+..++.+..|+....|+..+.  ||+++++.+...+.        .++||+|||++++|++|+++++||.+|+|+++|.
T Consensus       372 ~~~~~~~g~~Gel~v~g~~~~~--gy~~~~~~~~~~~~--------~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~  441 (547)
T PRK06087        372 ARKTLPPGCEGEEASRGPNVFM--GYLDEPELTARALD--------EEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGE  441 (547)
T ss_pred             CCCCCcCCCcceEEEecccccc--cccCCHHHHHHHhC--------CCCCcCcCceEEECCCCCEEEEecchhhhhcCCE
Confidence            3455666666666666665555  99999999887774        4689999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC-CccHHHHHHHHHHHH-HhcCCC
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA-TFNQELVKQLKQQVR-EKIGPF  199 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~l~-~~l~~~  199 (258)
                      ++         +|.    +||+.+.++|+|.++++++.+++..++.++++++..... ..+   ..++.+++. +.++++
T Consensus       442 ~v---------~p~----~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~l~~~  505 (547)
T PRK06087        442 NI---------SSR----EVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLT---LEEVVAFFSRKRVAKY  505 (547)
T ss_pred             EE---------CHH----HHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCC---HHHHHHHHHhcccccc
Confidence            99         999    999999999999999999998887788999999876532 222   256777765 569999


Q ss_pred             CCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        200 AMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       200 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ++|..+.+++++|+|.+||++|+.|++.+....
T Consensus       506 ~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~  538 (547)
T PRK06087        506 KYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL  538 (547)
T ss_pred             CCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHh
Confidence            999999999999999999999999998876653

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.91  E-value=1.8e-23  Score=198.26  Aligned_cols=160  Identities=30%  Similarity=0.387  Sum_probs=133.5

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|+..+  .||+++++.++..|.         ++||+|||+++++++|.+++.||.||+|+++|.+
T Consensus       348 ~~~~~~g~~Gel~i~~~~~~--~gY~~~~~~~~~~~~---------~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~  416 (508)
T TIGR02262       348 GQDVAAGEPGELLISGPSSA--TMYWNNRAKTRDTFQ---------GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIY  416 (508)
T ss_pred             CCCCCCCCeeEEEEecCccc--cccCCCHHHhHhhhh---------cCceeccceEEEcCCccEEEeccccceeeeCCEE
Confidence            34444444444444444433  589999999987774         5899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||+.|.++++|.++++++.++......+.+++++.......+.+.+++++.+++++++++.|
T Consensus       417 v---------~~~----~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p  483 (508)
T TIGR02262       417 V---------SPF----EIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYP  483 (508)
T ss_pred             E---------CHH----HHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCC
Confidence            9         999    999999999999999999988776677888888877654333344578999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHH
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRK  226 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~  226 (258)
                      ..++.++++|+|++||++|+.|++
T Consensus       484 ~~i~~~~~iP~t~~gKi~r~~l~~  507 (508)
T TIGR02262       484 RWIVFVDDLPKTATGKIQRFKLRE  507 (508)
T ss_pred             ceEEEecCCCCCCCCcEehhhccC
Confidence            999999999999999999999875

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.90  E-value=2.6e-23  Score=197.83  Aligned_cols=153  Identities=23%  Similarity=0.382  Sum_probs=126.2

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      ++.++.+..|+..+.|+..+  .+|++++...            ..+|||+|||++++|++|++++.||.||+||++|.+
T Consensus       363 ~~~~~~g~~Gel~v~g~~~~--~~Y~~~~~~~------------~~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~  428 (516)
T PRK13383        363 NRPVGPRVTGRIFVGGELAG--TRYTDGGGKA------------VVDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGEN  428 (516)
T ss_pred             CCCCCCCCceEEEEecCccc--ccccCCchhh------------eecCceecceeEEEcCCccEEEeccccceEEECCEE
Confidence            34444444444444444444  4887764311            136899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      +         +|.    +||..|.+||.|.++++++.++...++.+.++|++..+...+.   +++++.++++++.++.|
T Consensus       429 v---------~~~----eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~p  492 (516)
T PRK13383        429 V---------YPR----AVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDA---AQLRDYLKDRVSRFEQP  492 (516)
T ss_pred             E---------CHH----HHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCH---HHHHHHHHHhcccCCCC
Confidence            9         999    9999999999999999999988877888989998876544443   67999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHH
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLR  225 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~  225 (258)
                      ..+..++++|+|.+||++|+.|+
T Consensus       493 ~~i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        493 RDINIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             cEEEEeCCCCCCCCCcCcHHHhC
Confidence            99999999999999999999874

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.90  E-value=6.5e-23  Score=196.35  Aligned_cols=129  Identities=26%  Similarity=0.379  Sum_probs=117.9

Q ss_pred             CCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCc
Q psy12528         87 TTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGE  166 (258)
Q Consensus        87 ~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~  166 (258)
                      +.++||+|||+++++++|+++++||.+|+|+++|.++         +|.    +||..+.+||.|.+++|++.++...++
T Consensus       407 ~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v---------~~~----eIE~~l~~~~~v~~~~v~~~~~~~~~~  473 (542)
T PRK06018        407 DDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWI---------SSI----DLENLAVGHPKVAEAAVIGVYHPKWDE  473 (542)
T ss_pred             cCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEE---------CHH----HHHHHHHhCCcceeEEEEeccCCCcCc
Confidence            3579999999999999999999999999999999999         999    999999999999999999999887778


Q ss_pred             EEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        167 CLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       167 ~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      .+.+++.+.++...+.   +.+.+.++++++.+++|..++.++++|+|++||++|++|++.+.+.
T Consensus       474 ~~~~~v~~~~~~~~~~---~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~~  535 (542)
T PRK06018        474 RPLLIVQLKPGETATR---EEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKDY  535 (542)
T ss_pred             eeEEEEEeCCCCCCCH---HHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhcc
Confidence            8888888876655443   5789999999999999999999999999999999999999998763

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.90  E-value=3.7e-23  Score=203.53  Aligned_cols=161  Identities=14%  Similarity=0.151  Sum_probs=127.9

Q ss_pred             CcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE-CcEE
Q psy12528         44 DDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV-SGHL  122 (258)
Q Consensus        44 ~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~-~G~~  122 (258)
                      .+++.+..|+..+.|+.++.  ||+++++.|+..|.         +|||+|||+|++|+||+|+|+||.||+||+ +|++
T Consensus       461 ~~~~~g~~GEl~vrGp~v~~--GY~~~pe~T~~~f~---------dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~  529 (666)
T PLN02614        461 DALASTPRGEICIRGKTLFS--GYYKREDLTKEVLI---------DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEY  529 (666)
T ss_pred             ccCCCCCCceEEEcCCcccc--cccCCHHHhhhhhc---------cCCcccceEEEEcCCCCEEEEEcchhceecCCCee
Confidence            34555566777777776666  99999999998884         689999999999999999999999999996 7999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC-----------------CccHHHH
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA-----------------TFNQELV  185 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~-----------------~~~~~~~  185 (258)
                      |         +|.    +||++|.+||.|.+++|++.+..   ..++|+|++....                 ..++++.
T Consensus       530 V---------~p~----eIE~~l~~~p~V~~~~V~g~~~~---~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (666)
T PLN02614        530 V---------AVE----NIENIYGEVQAVDSVWVYGNSFE---SFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAK  593 (666)
T ss_pred             e---------cHH----HHHHHHhcCCCeeEEEEEecCCc---ceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHH
Confidence            9         999    99999999999999999987532   3688888765321                 0112223


Q ss_pred             HHHHHHH----H-HhcCCCCCCcEEEECCCC------CCCCCCcccHHHHHHHHhcc
Q psy12528        186 KQLKQQV----R-EKIGPFAMPDVIQHAPRL------PKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       186 ~~l~~~l----~-~~l~~~~~p~~~~~~~~l------P~t~~GKi~r~~l~~~~~~~  231 (258)
                      +.+.+.+    + ..|+.+.+++.|.++++-      ..|+++|+.|..+.+.|+..
T Consensus       594 ~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~  650 (666)
T PLN02614        594 EFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSV  650 (666)
T ss_pred             HHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHH
Confidence            3333333    2 459999999999998752      48999999999999999776

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.90  E-value=2.8e-23  Score=192.66  Aligned_cols=133  Identities=25%  Similarity=0.410  Sum_probs=117.8

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .||+++++.+...+.         ++||+|||++++|.||.+++.||.||++|++|+++         ++.    +||+.
T Consensus       304 ~gy~~~~~~~~~~~~---------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v---------~~~----~iE~~  361 (436)
T TIGR01923       304 KGYLYQGELTPAFEQ---------QGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENI---------YPE----EIETV  361 (436)
T ss_pred             hhhCCChhhhhhhhc---------CCCeeccceEEEcCCCCEEEeccccCeEEeCCEee---------CHH----HHHHH
Confidence            589998887765542         68999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVL  224 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l  224 (258)
                      +.+++.|.++++++.++...+..+.+++.+..+  .+   ..++.+++++.++.+++|..++.++++|+|++||++|++|
T Consensus       362 l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~---~~~l~~~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       362 LYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--IS---QAKLIAYLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             HHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--CC---HHHHHHHHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence            999999999999988877667788888887653  22   2578899999999999999999999999999999999864

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.90  E-value=1.2e-22  Score=195.89  Aligned_cols=182  Identities=18%  Similarity=0.162  Sum_probs=138.1

Q ss_pred             ceEEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCC--CcCc-CCCCeeecCceEEEccCCcEEEE
Q psy12528         33 PQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHN--NFSF-TTNNSDLLLSSARRDEDGYLWVT  109 (258)
Q Consensus        33 ~~~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~--~~~~-~~~~w~~TGDl~~~d~~G~l~~~  109 (258)
                      ..+.|.+++.+..++.+..|+....|+..+.  ||+++++.++..|....  .... ..++||+|||++++| +|+|+++
T Consensus       379 ~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~--gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~  455 (578)
T PRK05850        379 PTVRIVDPDTCIECPAGTVGEIWVHGDNVAA--GYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIV  455 (578)
T ss_pred             CEEEEEcCCCCcCCCCCCEEEEEEecCcccc--cccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEE
Confidence            3467778777778887777777777776666  99999999998885211  0001 135799999999997 9999999


Q ss_pred             eeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHH---HHH
Q psy12528        110 GRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQE---LVK  186 (258)
Q Consensus       110 GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~  186 (258)
                      ||.||+||++|.++         +|.    +||+.|.+||.+ +++++++++. .++.+++++++......+.+   ...
T Consensus       456 GR~~d~i~~~G~~i---------~p~----eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~  520 (578)
T PRK05850        456 GRIKDLLIVDGRNH---------YPD----DIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLR  520 (578)
T ss_pred             cccccEEEECCeec---------CHH----HHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHH
Confidence            99999999999999         999    999999999985 4777888876 57788999988765433322   234


Q ss_pred             HHHHHHHHhcCC--CCCCcEEEECC--CCCCCCCCcccHHHHHHHHhccc
Q psy12528        187 QLKQQVREKIGP--FAMPDVIQHAP--RLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       187 ~l~~~l~~~l~~--~~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      .+++.+.+.+..  ...|..+++++  .||+|.+||++|++|++.+.+..
T Consensus       521 ~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~~  570 (578)
T PRK05850        521 TVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQDE  570 (578)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcCC
Confidence            555555554432  23465566664  79999999999999999987764

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.89  E-value=3.3e-22  Score=192.03  Aligned_cols=167  Identities=25%  Similarity=0.400  Sum_probs=137.9

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.++ ++..++.+..|+..+.|...+.  ||+++++.++..|.         +|||+|||+++++++|+++++||.+|+
T Consensus       390 ~i~~~-~~~~~~~g~~Gel~v~g~~~~~--gy~~~~~~~~~~~~---------~g~~~TGDl~~~~~~g~l~i~GR~~d~  457 (560)
T PRK08974        390 KLVDD-DGNEVPPGEPGELWVKGPQVML--GYWQRPEATDEVIK---------DGWLATGDIAVMDEEGFLRIVDRKKDM  457 (560)
T ss_pred             EEECC-CCCCCCCCCceEEEEecCCcch--hhcCChhhhhhhhh---------cCCcccCCEEEEcCCceEEEEecccce
Confidence            34443 3555665555655555554444  89999998887763         589999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      |+++|.++         +|.    +||+.|.+||+|.++++++.++...++.++++++..+.. ...   +++++++.++
T Consensus       458 i~~~G~~i---------~~~----~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~-~~~---~~l~~~l~~~  520 (560)
T PRK08974        458 ILVSGFNV---------YPN----EIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS-LTE---EELITHCRRH  520 (560)
T ss_pred             EEeCCEEE---------CHH----HHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC-CCH---HHHHHHHHhh
Confidence            99999999         999    999999999999999999998887777777777654322 222   5788999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++.++.|..+..++++|+|.+||++|+.|++.....
T Consensus       521 l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~  556 (560)
T PRK08974        521 LTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAK  556 (560)
T ss_pred             cccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhh
Confidence            999999999999999999999999999999877553

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.89  E-value=1.8e-22  Score=193.06  Aligned_cols=155  Identities=25%  Similarity=0.386  Sum_probs=129.6

Q ss_pred             CcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEE
Q psy12528         44 DDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLM  123 (258)
Q Consensus        44 ~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v  123 (258)
                      ..++.+..|+..+.|...+  .||+++++.+...|.         ++||+|||+++++++|+++++||.||+||++|.++
T Consensus       386 ~~~~~g~~Gel~v~~~~~~--~gy~~~~~~~~~~~~---------~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i  454 (541)
T TIGR03205       386 KVLPPGEVGELRIRGPNVT--RGYWNRPEESAEAFV---------GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNV  454 (541)
T ss_pred             ccCCCCCeeEEEEecCCcc--ccccCChhhhHhhhc---------cCCcccCceEEEcCCceEEEEccccCeEEECCEEE
Confidence            3344444444444443333  489999999987774         57999999999999999999999999999999999


Q ss_pred             EeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC-ccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        124 TVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT-FNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       124 ~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                               +|.    +||+.+.+|+.|.+++++++++...++.+++++++..+.. .+   .+++++.++++++++++|
T Consensus       455 ---------~~~----eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~l~~~~~P  518 (541)
T TIGR03205       455 ---------YPQ----MIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFS---LDELRAFLAGKLGKHELP  518 (541)
T ss_pred             ---------CHH----HHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCC---HHHHHHHHHhhcccccCC
Confidence                     999    9999999999999999999988777788888888775432 23   267889999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHH
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLR  225 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~  225 (258)
                      ..+++++++|+|.+||++|+.|+
T Consensus       519 ~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       519 VAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             cEEEEeccCCCCcccceeHhhcC
Confidence            99999999999999999999874

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.89  E-value=1.1e-22  Score=210.26  Aligned_cols=152  Identities=20%  Similarity=0.237  Sum_probs=123.0

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSY  131 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~  131 (258)
                      |+....|+..+  .||++++...  .+.      ...+|||+|||++++|+||+++++||.||+||++|+++        
T Consensus       982 Gel~v~g~~~~--~gY~~~~~~~--~~~------~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v-------- 1043 (1140)
T PRK06814        982 GRLFVRGPNVM--LGYLRAENPG--VLE------PPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMI-------- 1043 (1140)
T ss_pred             eEEEEeCCCcc--hhhcCCCCCC--ccc------cCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEE--------
Confidence            34444444444  4888875321  111      12478999999999999999999999999999999999        


Q ss_pred             cCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh-cCCCCCCcEEEECCC
Q psy12528        132 CSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK-IGPFAMPDVIQHAPR  210 (258)
Q Consensus       132 ~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~~~~  210 (258)
                       +|.    |||+.+.+|+.+.+++|++++++..++.+++++..   ...+.   ++++++++++ ++.+++|..++.+++
T Consensus      1044 -~~~----eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~---~~~~~---~~l~~~~~~~~l~~~~~P~~i~~v~~ 1112 (1140)
T PRK06814       1044 -SLA----AVEELAAELWPDALHAAVSIPDARKGERIILLTTA---SDATR---AAFLAHAKAAGASELMVPAEIITIDE 1112 (1140)
T ss_pred             -CHH----HHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcC---CCcCH---HHHHHHHHHcCCCcccCCcEEEEecC
Confidence             999    99999999999999999999988878887766542   22222   5788888875 999999999999999


Q ss_pred             CCCCCCCcccHHHHHHHHhccc
Q psy12528        211 LPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       211 lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +|+|++||++|++|++++.+..
T Consensus      1113 lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1113 IPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             cCCCCCCCCcHHHHHHHHHHhh
Confidence            9999999999999999887654

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.89  E-value=2.3e-22  Score=197.75  Aligned_cols=165  Identities=16%  Similarity=0.242  Sum_probs=128.7

Q ss_pred             CCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE-CcEEEEeeecc
Q psy12528         51 SMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV-SGHLMTVYFFG  129 (258)
Q Consensus        51 ~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~-~G~~v~~~~~~  129 (258)
                      .|+..+.|+.++.  ||+++++.|+..|.         +|||+|||+|++|+||+|+|+||+||+||+ +|++|      
T Consensus       465 ~GEi~vrGp~v~~--GY~~~pe~T~~~f~---------dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I------  527 (660)
T PLN02861        465 RGEICLRGNTLFS--GYHKRQDLTEEVLI---------DGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYV------  527 (660)
T ss_pred             ceeEEEcCCcccc--cccCCHHHHHhhhh---------ccCcccCceEEECCCCcEEEEeccccceEcCCCeEE------
Confidence            3555555665555  99999999999884         689999999999999999999999999996 79999      


Q ss_pred             cccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC------------Ccc-----HHHHHHHHHHH
Q psy12528        130 SYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA------------TFN-----QELVKQLKQQV  192 (258)
Q Consensus       130 ~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~------------~~~-----~~~~~~l~~~l  192 (258)
                         +|.    +||++|.+||.|.+|+|++.+.   ++.++|+|++....            ...     ......+.+.+
T Consensus       528 ---~p~----eIE~~l~~~p~V~~a~V~G~~~---~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (660)
T PLN02861        528 ---AVE----NLENTYSRCPLIASIWVYGNSF---ESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDEL  597 (660)
T ss_pred             ---cHH----HHHHHHhcCCCeeEEEEEecCC---cceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHH
Confidence               999    9999999999999999998753   45788888875320            000     11222333333


Q ss_pred             H----H-hcCCCCCCcEEEECCC-C-----CCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccCC
Q psy12528        193 R----E-KIGPFAMPDVIQHAPR-L-----PKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPEG  256 (258)
Q Consensus       193 ~----~-~l~~~~~p~~~~~~~~-l-----P~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  256 (258)
                      +    + .+..+.+++.+.+.++ +     .+|+++|+.|+.+.+.|++.              +.++|+...++
T Consensus       598 ~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~--------------I~~lY~~~~~~  658 (660)
T PLN02861        598 NSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDC--------------IDQLYSEAKGG  658 (660)
T ss_pred             HHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHH--------------HHHHHHhhhhc
Confidence            3    3 3888999999988664 5     79999999999999999876              56666665544

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.89  E-value=1.4e-22  Score=195.78  Aligned_cols=161  Identities=20%  Similarity=0.274  Sum_probs=125.1

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+....|+..+.  ||+++ ..+...+.        .++||+|||++++ ++|+++++||.||+||++|++
T Consensus       403 ~~~~~~g~~Gel~i~g~~~~~--gY~~~-~~~~~~~~--------~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~  470 (579)
T PRK09192        403 GMPLPERVVGHICVRGPSLMS--GYFRD-EESQDVLA--------ADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRN  470 (579)
T ss_pred             CCCCCCCCEEEEEecCCchhh--hhcCC-cccccccc--------CCceeeccceeeE-ECCEEEEEeccccEEEECCCc
Confidence            344444444444444544444  89998 55544442        4789999999999 999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcc--eEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcC-CC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVS--EAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIG-PF  199 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~--~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~-~~  199 (258)
                      +         +|.    +||++|.+||+|.  ++++++.+++. ++.++++++.......+   .+++.+.+++.+. .+
T Consensus       471 v---------~p~----eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~  533 (579)
T PRK09192        471 I---------WPQ----DIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDEER---RGQLIHALAALVRSEF  533 (579)
T ss_pred             c---------CHH----HHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCChHH---HHHHHHHHHHHHHHHh
Confidence            9         999    9999999999998  89999988875 45777787765443222   3567777777763 57


Q ss_pred             CCCcEEEECC--CCCCCCCCcccHHHHHHHHhccc
Q psy12528        200 AMPDVIQHAP--RLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       200 ~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +.|..+.+++  ++|+|.+||++|++|++++.+..
T Consensus       534 ~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~~  568 (579)
T PRK09192        534 GVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLSGA  568 (579)
T ss_pred             CCCceEEEeCCCCcCCCCCcchhHHHHHHHHHcCC
Confidence            7887777775  89999999999999999998865

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.89  E-value=6.9e-22  Score=181.11  Aligned_cols=141  Identities=22%  Similarity=0.309  Sum_probs=118.2

Q ss_pred             CCCeeecCceEEE-ccCCcEEEEeeCCCeeEECc---EEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCC
Q psy12528         88 TNNSDLLLSSARR-DEDGYLWVTGRVDDMLNVSG---HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPV  163 (258)
Q Consensus        88 ~~~w~~TGDl~~~-d~~G~l~~~GR~~d~i~~~G---~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~  163 (258)
                      .+|||+|||+|++ |++|+|+|+||.+     +|   .+|         +|     +||++|.+||+|.+|+|++++++.
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV---------~p-----~IE~~L~~hp~V~eaaVvgvpd~~  267 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNE---------AP-----AIQAALKSDPAVSDVAIALFSLPA  267 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceee---------CH-----HHHHHHHhCCCccEEEEEEEEcCC
Confidence            5799999999998 7999999999998     77   677         66     499999999999999999999999


Q ss_pred             CCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc-cCCC-CCCC
Q psy12528        164 KGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE-VGDK-STLA  241 (258)
Q Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~-~~~~-~~~~  241 (258)
                      .++.++|+|++..  ..+.   ++++++|+++|+. ++|..+.+++++|+|++||++|+.|+.++.+... ..++ .+..
T Consensus       268 ~ge~v~A~Vv~~~--~~~~---~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~~~l~~~~~~~~  341 (365)
T PRK09188        268 KGVGLYAFVEAEL--PADE---KSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQIDELDDLLREPE  341 (365)
T ss_pred             CCeEEEEEEEECC--CCCH---HHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcccccccccccChh
Confidence            9999999998764  2232   6899999999999 9999999999999999999999999999877665 3333 3444


Q ss_pred             chHHHHHHHHHc
Q psy12528        242 DEDVVDELFQNR  253 (258)
Q Consensus       242 ~~~~l~~l~~~~  253 (258)
                      ....++++....
T Consensus       342 ~~~~~~~~~~~~  353 (365)
T PRK09188        342 IRGLVEAIAAHR  353 (365)
T ss_pred             HHHHHHHHHHHh
Confidence            445566665543

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.89  E-value=3.2e-22  Score=197.81  Aligned_cols=159  Identities=20%  Similarity=0.253  Sum_probs=121.7

Q ss_pred             CCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE-CcEEEEeeecc
Q psy12528         51 SMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV-SGHLMTVYFFG  129 (258)
Q Consensus        51 ~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~-~G~~v~~~~~~  129 (258)
                      .|+..+.|+.++.  ||+++++.|+..|....    ++.+||+|||+|++|+||+|+|+||+||+||+ +|++|      
T Consensus       502 ~GEi~vrGp~v~~--GY~~~pe~T~~~f~~d~----~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I------  569 (696)
T PLN02387        502 RGEIVIGGPSVTL--GYFKNQEKTDEVYKVDE----RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYV------  569 (696)
T ss_pred             CceEEeccCcccc--hhcCCHHHHhhhhcccc----CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEE------
Confidence            3555555555555  99999999999884110    12359999999999999999999999999997 69999      


Q ss_pred             cccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC-------------C-----ccHHHHHHHHHH
Q psy12528        130 SYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA-------------T-----FNQELVKQLKQQ  191 (258)
Q Consensus       130 ~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~-------------~-----~~~~~~~~l~~~  191 (258)
                         +|.    +||++|.+||.|.+++|++.+.   ...++|+|++....             .     .++++.+.+.+.
T Consensus       570 ---~p~----eIE~~l~~~p~V~~~~V~g~~~---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  639 (696)
T PLN02387        570 ---SLG----KVEAALSVSPYVDNIMVHADPF---HSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQS  639 (696)
T ss_pred             ---chH----HHHHHHhcCCCeeEEEEEecCC---cceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHH
Confidence               999    9999999999999999998653   33677888775321             0     112233333333


Q ss_pred             HH-----HhcCCCCCCcEEEECCCCC------CCCCCcccHHHHHHHHhcc
Q psy12528        192 VR-----EKIGPFAMPDVIQHAPRLP------KTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       192 l~-----~~l~~~~~p~~~~~~~~lP------~t~~GKi~r~~l~~~~~~~  231 (258)
                      +.     .+|..+++|+.|.++++..      .|++.|+.|+.+++.|+++
T Consensus       640 ~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~  690 (696)
T PLN02387        640 LSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDD  690 (696)
T ss_pred             HHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHH
Confidence            32     3599999999999988743      7888999999999999876

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.87  E-value=1.8e-21  Score=180.56  Aligned_cols=119  Identities=29%  Similarity=0.469  Sum_probs=108.3

Q ss_pred             CCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcE
Q psy12528         88 TNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGEC  167 (258)
Q Consensus        88 ~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~  167 (258)
                      .++||+|||++++|+||+++++||.||+||++|.++         +|.    +||+.+.++|+|.+++|++.+++..++.
T Consensus       289 ~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v---------~p~----eIE~~l~~~~~v~~a~v~~~~~~~~~~~  355 (414)
T PRK08308        289 GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNV---------YPI----EVEDVMLRLPGVQEAVVYRGKDPVAGER  355 (414)
T ss_pred             CCceEECCceEEECCCccEEEecccCCeEEECCEEE---------CHH----HHHHHHHhCCCeeEEEEEeccCCCCCce
Confidence            468999999999999999999999999999999999         999    9999999999999999999998887888


Q ss_pred             EEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHH
Q psy12528        168 LYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVL  224 (258)
Q Consensus       168 ~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l  224 (258)
                      +.++++....  .+.   ++++++++++++.+++|..++.++.+|+|++||++|+.|
T Consensus       356 ~~~~v~~~~~--~~~---~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~  407 (414)
T PRK08308        356 VKAKVISHEE--IDP---VQLREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL  407 (414)
T ss_pred             EEEEEEeCCC--CCH---HHHHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhh
Confidence            8888876642  332   578899999999999999999999999999999999943

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.87  E-value=3e-21  Score=189.83  Aligned_cols=165  Identities=14%  Similarity=0.158  Sum_probs=128.1

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE-CcEEEEeeeccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV-SGHLMTVYFFGS  130 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~-~G~~v~~~~~~~  130 (258)
                      |+..+.|+..+.  ||+++++.|+..|.         +|||+|||+|++|+||+|+|+||.||+||. +|++|       
T Consensus       466 GEi~vrg~~v~~--GY~~~~e~t~~~~~---------dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V-------  527 (660)
T PLN02430        466 GEICVRGKCLFS--GYYKNPELTEEVMK---------DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYV-------  527 (660)
T ss_pred             ceEEecCCCccc--cccCChHHhhhhhh---------ccceeccceEEECCCCcEEEEEcccccEEcCCCcEE-------
Confidence            444445554444  99999999988873         699999999999999999999999999996 69999       


Q ss_pred             ccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC-----------------CccHHHHHHHHH---
Q psy12528        131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA-----------------TFNQELVKQLKQ---  190 (258)
Q Consensus       131 ~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~-----------------~~~~~~~~~l~~---  190 (258)
                        +|.    +||+.+.+||.|.+++|++..   .+..++|+|++....                 ..++++.+.+.+   
T Consensus       528 --~p~----~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~  598 (660)
T PLN02430        528 --ALE----YLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELK  598 (660)
T ss_pred             --chH----HHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHH
Confidence              999    999999999999999999842   246788888876421                 011222333333   


Q ss_pred             -HHH-HhcCCCCCCcEEEECCCC------CCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccCCC
Q psy12528        191 -QVR-EKIGPFAMPDVIQHAPRL------PKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPEGN  257 (258)
Q Consensus       191 -~l~-~~l~~~~~p~~~~~~~~l------P~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  257 (258)
                       ... +.|+.+.+++.+.+.++.      .+|+++|+.|+.+.+.|+..              ++++|+.+.++.
T Consensus       599 ~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~--------------i~~ly~~~~~~~  659 (660)
T PLN02430        599 STAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVE--------------IDEMYRKLAEKR  659 (660)
T ss_pred             HHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHH--------------HHHHHHhhhhcc
Confidence             322 349999999999987752      58999999999999999876              677777766543

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.87  E-value=7.1e-22  Score=192.41  Aligned_cols=155  Identities=14%  Similarity=0.162  Sum_probs=114.1

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEE----ccCCcEEEEeeCCCeeE-ECcEEEEee
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARR----DEDGYLWVTGRVDDMLN-VSGHLMTVY  126 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~----d~~G~l~~~GR~~d~i~-~~G~~v~~~  126 (258)
                      |+..+.|...+.  ||+++++.++..|.        .+|||+|||+|++    |++|+|+|+||.||+|+ .+|+++.+ 
T Consensus       412 GEi~vrg~~v~~--GY~~~p~~t~~~~~--------~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~-  480 (614)
T PRK08180        412 LEVRVKGPNVTP--GYWRAPELTAEAFD--------EEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSV-  480 (614)
T ss_pred             cEEEEecCccch--hhcCChhHhHhhcc--------cCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecc-
Confidence            344444444444  99999999988874        4799999999999    46899999999999888 57988711 


Q ss_pred             ecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC-----------ccH-HHHHHHHHHHHH
Q psy12528        127 FFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT-----------FNQ-ELVKQLKQQVRE  194 (258)
Q Consensus       127 ~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~-----------~~~-~~~~~l~~~l~~  194 (258)
                            +|.    |+|..+.+||.|.+|+|++.+++    .+.++|++..+..           ..+ ...+++++++++
T Consensus       481 ------~p~----Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  546 (614)
T PRK08180        481 ------GPL----RARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRE  546 (614)
T ss_pred             ------hhh----hHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHH
Confidence                  366    89999999999999999998765    4667777664310           000 001345565555


Q ss_pred             hcCCCC--------CCcEEEECCCCCCCC------CCcccHHHHHHHHhcc
Q psy12528        195 KIGPFA--------MPDVIQHAPRLPKTR------SGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 ~l~~~~--------~p~~~~~~~~lP~t~------~GKi~r~~l~~~~~~~  231 (258)
                      .+..++        +|+.+.+++++|+++      +||+.|+++.+.|+++
T Consensus       547 ~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~  597 (614)
T PRK08180        547 RLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAAL  597 (614)
T ss_pred             HHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHH
Confidence            555444        899999999998765      5577788888888766

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.86  E-value=3.3e-21  Score=190.68  Aligned_cols=155  Identities=15%  Similarity=0.169  Sum_probs=117.6

Q ss_pred             CCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeE-ECcEEEEeeecc
Q psy12528         51 SMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLN-VSGHLMTVYFFG  129 (258)
Q Consensus        51 ~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~-~~G~~v~~~~~~  129 (258)
                      .|+..+.|+.++.  ||+++++.|+..|.        .+|||+|||+|++|+||+|+|+||.||+|| .+|++|      
T Consensus       507 ~GEL~vrG~~v~~--GY~~~pe~T~~~f~--------~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I------  570 (700)
T PTZ00216        507 RGEILLRGPFLFK--GYYKQEELTREVLD--------EDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYI------  570 (700)
T ss_pred             CceEEEcCCcccc--hhcCChhHhhhhcc--------ccCCeeccceEEEcCCCcEEEEEehHhheecCCCcee------
Confidence            4555555665555  99999999999885        468999999999999999999999999999 899999      


Q ss_pred             cccCCCCCHHHHHHHHHcCCCcceE--EEEeeeCCCCCcEEEEEEEeCCCC-----------------CccHHHHHHHHH
Q psy12528        130 SYCSTAKVFTEVEACLASHPDVSEA--AVVSRPHPVKGECLYCFITPAGGA-----------------TFNQELVKQLKQ  190 (258)
Q Consensus       130 ~~~~~~~~~~~iE~~l~~~~~v~~a--~vv~~~~~~~~~~~~~~v~~~~~~-----------------~~~~~~~~~l~~  190 (258)
                         +|.    +||+.+.+||.|.++  +++..++   ...+++++++....                 ..++++.+.+.+
T Consensus       571 ---~p~----eIE~~l~~~p~V~~~~~~v~~~~~---~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  640 (700)
T PTZ00216        571 ---ALE----ALEALYGQNELVVPNGVCVLVHPA---RSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATE  640 (700)
T ss_pred             ---ccH----HHHHHHhcCcCcccceEEEEEecC---CceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHH
Confidence               999    999999999999973  4444332   35778888765311                 011222223333


Q ss_pred             ----HHH-HhcCCCCCCcEEEECCC------CCCCCCCcccHHHHHHHHhcc
Q psy12528        191 ----QVR-EKIGPFAMPDVIQHAPR------LPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       191 ----~l~-~~l~~~~~p~~~~~~~~------lP~t~~GKi~r~~l~~~~~~~  231 (258)
                          ..+ ..+..+..++.|.++++      -..|+++|+.|+.+.+.|+..
T Consensus       641 ~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~  692 (700)
T PTZ00216        641 SLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADL  692 (700)
T ss_pred             HHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHH
Confidence                332 35788899999998764      347999999999999998765

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.86  E-value=7.1e-21  Score=189.25  Aligned_cols=154  Identities=9%  Similarity=0.036  Sum_probs=119.0

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE-CcEEEEeeeccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV-SGHLMTVYFFGS  130 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~-~G~~v~~~~~~~  130 (258)
                      |+..+.|+.+|.  ||+++|+.|+..|.        .+|||+|||+|++|+||+|+|+||.||+||. +|++|       
T Consensus       542 GEl~vrGp~v~~--GY~~~pe~T~~~f~--------~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I-------  604 (746)
T PTZ00342        542 GELLIKSDSIFS--GYFLEKEQTKNAFT--------EDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYI-------  604 (746)
T ss_pred             eEEEEecCcccc--cccCChhhhhhhcC--------cCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEE-------
Confidence            445555555555  99999999999885        4799999999999999999999999999995 79999       


Q ss_pred             ccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCC----------------C---Ccc----------
Q psy12528        131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGG----------------A---TFN----------  181 (258)
Q Consensus       131 ~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~----------------~---~~~----------  181 (258)
                        +|.    +||+++.+||.|.+|+|++.+.   ...++|+|++...                .   ...          
T Consensus       605 --~p~----eIE~~l~~~p~V~~~~VvG~~~---~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~  675 (746)
T PTZ00342        605 --ETD----MLNNLYSQISFINFCVVYGDDS---MDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETINN  675 (746)
T ss_pred             --chH----HHHHHHhcCCCccEEEEEccCC---ccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhhcc
Confidence              999    9999999999999999998632   3367788876531                0   000          


Q ss_pred             HHHHHHHHHHH----HH-hcCCCCCCcEEEECCC-C----CCCCCCcccHHHHHHHHhcc
Q psy12528        182 QELVKQLKQQV----RE-KIGPFAMPDVIQHAPR-L----PKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       182 ~~~~~~l~~~l----~~-~l~~~~~p~~~~~~~~-l----P~t~~GKi~r~~l~~~~~~~  231 (258)
                      +.+.+.+.+.+    ++ .|.++.+++.|.++++ +    -.|++.|+.|..+.+.|+..
T Consensus       676 ~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~  735 (746)
T PTZ00342        676 NIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFF  735 (746)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHH
Confidence            01122223222    22 5999999999988864 2    38999999999999988754

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.84  E-value=1.3e-20  Score=180.26  Aligned_cols=127  Identities=19%  Similarity=0.192  Sum_probs=98.7

Q ss_pred             CCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeee--CCCCC
Q psy12528         88 TNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP--HPVKG  165 (258)
Q Consensus        88 ~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~--~~~~~  165 (258)
                      .++||+|||++++|++|+++++||.||+||++|.++         +|.    +||..|.+||+|.+++++++.  +...+
T Consensus       412 ~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v---------~~~----eiE~~l~~~~~v~~~~vv~~~~~~~~~~  478 (545)
T PRK07768        412 ADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNI---------YPT----DIERAAARVEGVRPGNAVAVRLDAGHSR  478 (545)
T ss_pred             CCCeeeccceEEEecCCEEEEEccccceEEECCEec---------CHH----HHHHHHHhCcccccceEEEEEecCCCCc
Confidence            468999999999999999999999999999999999         999    999999999999998777654  33334


Q ss_pred             cEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCC--CCCcEEEECC--CCCCCCCCcccHHHHHHHHh
Q psy12528        166 ECLYCFITPAGGATFNQELVKQLKQQVREKIGPF--AMPDVIQHAP--RLPKTRSGKIMRRVLRKVAV  229 (258)
Q Consensus       166 ~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~  229 (258)
                      +.+++++.....  .+.....++.+.+++.+...  ..|..+.+++  ++|+|++||++|+.|++++.
T Consensus       479 ~~~~~~v~~~~~--~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        479 EGFAVAVESNAF--EDPAEVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             eEEEEEEEeccc--ccHHHHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence            455555554432  22222345666666654433  5677777776  79999999999999998764

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.83  E-value=2.6e-20  Score=181.81  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=112.3

Q ss_pred             CCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEE-c---cCCcEEEEeeCCCeeEE-CcEEE
Q psy12528         49 TLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARR-D---EDGYLWVTGRVDDMLNV-SGHLM  123 (258)
Q Consensus        49 ~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~-d---~~G~l~~~GR~~d~i~~-~G~~v  123 (258)
                      +..|+..+.|+..+.  ||+++++.++..|.        .+|||+|||+|++ |   ++|+|+|+||.||+|++ +|+++
T Consensus       421 G~~GEl~vrg~~v~~--GY~~~p~~t~~~f~--------~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i  490 (624)
T PRK12582        421 GDKYEVRVKGPNVTP--GYHKDPELTAAAFD--------EEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWV  490 (624)
T ss_pred             CCceEEEEECCcccc--cccCCccchhhhcC--------ccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEe
Confidence            334455555555444  99999999988884        4799999999998 4   46999999999999995 79999


Q ss_pred             EeeecccccCCCCCHHHH--HHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCC----------CCC-----ccHHHHH
Q psy12528        124 TVYFFGSYCSTAKVFTEV--EACLASHPDVSEAAVVSRPHPVKGECLYCFITPAG----------GAT-----FNQELVK  186 (258)
Q Consensus       124 ~~~~~~~~~~~~~~~~~i--E~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~----------~~~-----~~~~~~~  186 (258)
                               +|.    ++  |.++.+||.|.+|+|++.+++..+    ++|++..          +.+     ..+++.+
T Consensus       491 ---------~p~----~iE~e~~l~~~p~V~~a~VvG~~~~~~g----~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  553 (624)
T PRK12582        491 ---------SVG----TLRPDAVAACSPVIHDAVVAGQDRAFIG----LLAWPNPAACRQLAGDPDAAPEDVVKHPAVLA  553 (624)
T ss_pred             ---------chH----HHHHHHHHhcCcchheEEEEcCCCCcEE----EEEecCHHHHHHHHhcCCCCHHHHhcCHHHHH
Confidence                     887    77  468889999999999998765433    3333221          100     1222333


Q ss_pred             HHHHHH---HHhcCCCC-CCcEEEECCCCC------CCCCCcccHHHHHHHHhccc
Q psy12528        187 QLKQQV---REKIGPFA-MPDVIQHAPRLP------KTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       187 ~l~~~l---~~~l~~~~-~p~~~~~~~~lP------~t~~GKi~r~~l~~~~~~~~  232 (258)
                      .+...+   ++.++.+. +|..+.+++++|      +|++||+.|+.+.+.|+++-
T Consensus       554 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i  609 (624)
T PRK12582        554 ILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALV  609 (624)
T ss_pred             HHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHH
Confidence            333333   33456666 999999999876      56678888999888887763

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.83  E-value=4.3e-20  Score=178.23  Aligned_cols=182  Identities=20%  Similarity=0.267  Sum_probs=135.8

Q ss_pred             ceecCCCCCceE-EEEe-----------CCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCe
Q psy12528         24 FTVLGQVTVPQI-SILE-----------PRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNS   91 (258)
Q Consensus        24 ~~~yG~te~~~~-~i~~-----------~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w   91 (258)
                      .++||+||++.+ ++..           |-.+.++.+.+.|+.-+.|+.+|.  |||++|++|++.|.        .+||
T Consensus       381 ~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d~GEilVRG~~Vm~--GYyk~pe~Taeaf~--------~DGW  450 (613)
T COG1022         381 LEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIADDGEILVRGPNVMK--GYYKNPEATAEAFT--------EDGW  450 (613)
T ss_pred             EEEecccccccceEEccccCcccCCcCCcCCCceEEEccCceEEEecchhcc--hhcCChHHHhhhcc--------ccCC
Confidence            578999997654 3332           333455566677788888888888  99999999999995        6899


Q ss_pred             eecCceEEEccCCcEEEEeeCCCeeE-ECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEE
Q psy12528         92 DLLLSSARRDEDGYLWVTGRVDDMLN-VSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYC  170 (258)
Q Consensus        92 ~~TGDl~~~d~~G~l~~~GR~~d~i~-~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~  170 (258)
                      |+|||+|.+|++|+|.++||++++|| .+|++|         .|.    .||..+.++|.|.+++|++ ++.   ..+.|
T Consensus       451 f~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknI---------aP~----~IE~~l~~~~~I~qi~vvg-~~k---~~~~A  513 (613)
T COG1022         451 FRTGDLGELDEDGYLVITGRKKELIKLSNGKNI---------APE----PIESKLAKSPLIEQICVVG-DDK---KFLVA  513 (613)
T ss_pred             cccCceeEEcCCCcEEEeecccceEECCCCccc---------ChH----HHHHHHhcCCCeeEEEEEe-cCC---cceEE
Confidence            99999999999999999999999999 579999         999    9999999999999999998 332   26777


Q ss_pred             EEEeCCCCC-------------------ccHHHHHHHHHHHHH---hcCCCCCCcEEEECCC------CCCCCCCcccHH
Q psy12528        171 FITPAGGAT-------------------FNQELVKQLKQQVRE---KIGPFAMPDVIQHAPR------LPKTRSGKIMRR  222 (258)
Q Consensus       171 ~v~~~~~~~-------------------~~~~~~~~l~~~l~~---~l~~~~~p~~~~~~~~------lP~t~~GKi~r~  222 (258)
                      +|++..+.-                   .+..+++.+...+..   .+..+..+..+...+.      --.|++-|+.|.
T Consensus       514 lIvp~~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~  593 (613)
T COG1022         514 LIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRH  593 (613)
T ss_pred             EEeCCHHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHH
Confidence            777664310                   011222333333332   2334455555655543      347899999999


Q ss_pred             HHHHHHhccc
Q psy12528        223 VLRKVAVNDR  232 (258)
Q Consensus       223 ~l~~~~~~~~  232 (258)
                      .+.+.+....
T Consensus       594 ~i~~~~~~~i  603 (613)
T COG1022         594 VILDRYKDEI  603 (613)
T ss_pred             HHHHhhhhHH
Confidence            9988887653

>KOG1256|consensus

Probab=99.82  E-value=2.3e-19  Score=172.42  Aligned_cols=157  Identities=14%  Similarity=0.150  Sum_probs=124.8

Q ss_pred             CCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEE-CcEEEEeee
Q psy12528         49 TLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNV-SGHLMTVYF  127 (258)
Q Consensus        49 ~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~-~G~~v~~~~  127 (258)
                      +..|+.++.|+.++.  ||+++|+.|++.++        .+||++|||+|+||++|.|.|.||+++++|. .|+.|    
T Consensus       496 ~~~GEIcirG~~Vf~--GYyK~p~~T~e~id--------eDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyV----  561 (691)
T KOG1256|consen  496 GSKGEICVRGPNVFM--GYYKDPEKTAEAID--------EDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYV----  561 (691)
T ss_pred             CCcceEEEecchhce--eccCChHHHhhhhc--------cccccccccceeECCCccEEEEecccceEEcCCCCcc----
Confidence            345788889999998  99999999999996        6899999999999999999999999999995 59999    


Q ss_pred             cccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCc---------------------cHHHHH
Q psy12528        128 FGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATF---------------------NQELVK  186 (258)
Q Consensus       128 ~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~---------------------~~~~~~  186 (258)
                           .|.    .||++..+.+-|.+.+|.+.+.   ...++++|+++.....                     .+..+.
T Consensus       562 -----aPe----~IEniy~~~~~V~qi~V~g~s~---~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~  629 (691)
T KOG1256|consen  562 -----APE----KIENIYKRSLPVQQIFVLGDSL---RSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLS  629 (691)
T ss_pred             -----ChH----HHHHHHhcCCceEEEEEECCcc---hhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHH
Confidence                 999    9999999999999999987654   3488888888643211                     111233


Q ss_pred             HHHHHHHHh-cCCCCCCcEEEECC------CCCCCCCCcccHHHHHHHHhcc
Q psy12528        187 QLKQQVREK-IGPFAMPDVIQHAP------RLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       187 ~l~~~l~~~-l~~~~~p~~~~~~~------~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++.++.++. +..+..-..+.+.+      .=-.||+-|+.|..+.+.|+.+
T Consensus       630 el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~  681 (691)
T KOG1256|consen  630 ELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQ  681 (691)
T ss_pred             HHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHH
Confidence            444444433 66666666666633      3457999999999999999887

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.74  E-value=3.6e-17  Score=151.54  Aligned_cols=112  Identities=31%  Similarity=0.392  Sum_probs=98.9

Q ss_pred             CeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEE
Q psy12528         90 NSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLY  169 (258)
Q Consensus        90 ~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~  169 (258)
                      .|++|||++++|++|+|+|+||.||+||++|.++         +|.    +||++|.+||+|.++++..     .++.+.
T Consensus       275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V---------~p~----eIE~~l~~~p~V~~~~v~~-----~g~~~~  336 (386)
T TIGR02372       275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNV---------SPG----HVRDILERNPRVRAAAVRL-----DGRRLK  336 (386)
T ss_pred             ceeecCceEEEcCCCcEEEecccCCEEEECCEEE---------cHH----HHHHHHHcCCCceEEEEEc-----CCceEE
Confidence            5799999999999999999999999999999999         999    9999999999999998852     256788


Q ss_pred             EEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCccc
Q psy12528        170 CFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM  220 (258)
Q Consensus       170 ~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~  220 (258)
                      ++|++.++... ..+.++++++++++++.++.|..+.+++++|+|++||++
T Consensus       337 a~vv~~~~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       337 AFIVVAEDADE-AELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             EEEEECCCCCh-HHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence            88888754322 234468999999999999999999999999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1180|consensus

Probab=99.72  E-value=3e-17  Score=153.09  Aligned_cols=205  Identities=17%  Similarity=0.204  Sum_probs=143.0

Q ss_pred             CccceEEEEecCCCC----Cceec--------ceecCCCCCce-EEEEeCCC---C----------------CcCCCCCC
Q psy12528          4 DYKGTVDITLPARPG----MERFS--------FTVLGQVTVPQ-ISILEPRL---G----------------DDLNLTLS   51 (258)
Q Consensus         4 ~~~g~~~~~l~~~~g----~~~~g--------~~~yG~te~~~-~~i~~~~~---g----------------~~~~~~~~   51 (258)
                      ..+|.++..|+...-    +-+|-        .+.||.||+.. -.|.+|.+   |                .+......
T Consensus       399 ~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~  478 (678)
T KOG1180|consen  399 LLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAK  478 (678)
T ss_pred             HhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCC
Confidence            367888888864222    22222        36799999653 34555432   1                11111111


Q ss_pred             CC---CeEEeecccccccccCChHHHhhhcccCCCcCcCCCC--eeecCceEEEccCCcEEEEeeCCCeeE-ECcEEEEe
Q psy12528         52 MN---PTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNN--SDLLLSSARRDEDGYLWVTGRVDDMLN-VSGHLMTV  125 (258)
Q Consensus        52 ~~---~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~--w~~TGDl~~~d~~G~l~~~GR~~d~i~-~~G~~v~~  125 (258)
                      ..   ++....+...+.||+++++.|++.|..       .+|  ||+|||+|++.+||.|.|.+|++|++| .+|+.|  
T Consensus       479 ~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~-------~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYI--  549 (678)
T KOG1180|consen  479 NKPPRGEILIGGPNVTMGYYKNEEKTKEDFTV-------EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYI--  549 (678)
T ss_pred             CCCCCceEEecCCccChhhhCChhhhhhhcee-------cCCcEEEeccccceecCCCcEEEeechhhhhhhccccee--
Confidence            11   223333333347999999999999973       355  999999999999999999999999999 579999  


Q ss_pred             eecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC----------Cc--------cHH----
Q psy12528        126 YFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA----------TF--------NQE----  183 (258)
Q Consensus       126 ~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~----------~~--------~~~----  183 (258)
                             ++.    -+|+.+.+.|.|...+|++-+.   ...++++|++..+.          ..        +..    
T Consensus       550 -------sL~----KvEa~l~s~p~V~NICvyAd~~---~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~  615 (678)
T KOG1180|consen  550 -------SLG----KVEAALRSSPYVDNICVYADSN---KSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKA  615 (678)
T ss_pred             -------ehH----HHHHHHhcCcchhheEEecccc---cceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHH
Confidence                   999    9999999999999999987643   45888899887542          00        111    


Q ss_pred             HHHHHHHHH-HHhcCCCCCCcEEEECCCC------CCCCCCcccHHHHHHHHhcc
Q psy12528        184 LVKQLKQQV-REKIGPFAMPDVIQHAPRL------PKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       184 ~~~~l~~~l-~~~l~~~~~p~~~~~~~~l------P~t~~GKi~r~~l~~~~~~~  231 (258)
                      ..++|.+.- ..+|..+.+|..|++.++.      -+|..-|+.|+.++..++.+
T Consensus       616 v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~e  670 (678)
T KOG1180|consen  616 VLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKE  670 (678)
T ss_pred             HHHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHH
Confidence            123344443 3358899999999998873      25667899999999988776

>KOG1179|consensus

Probab=99.69  E-value=1.2e-16  Score=149.59  Aligned_cols=175  Identities=21%  Similarity=0.240  Sum_probs=137.1

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .||.+..+++++.+. ++ .+-++|-||+|||+-.+|+.|+|||.+|..|.+-..|++|         +..    |+|+.
T Consensus       465 ~GY~g~~~~t~kKl~-rD-VFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENV---------sTt----EVe~~  529 (649)
T KOG1179|consen  465 LGYAGPKKATEKKLL-RD-VFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENV---------STT----EVEDV  529 (649)
T ss_pred             ccccCchhhhhhhhH-Hh-hhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcc---------cHH----HHHHH
Confidence            699997777765553 12 2225789999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCC-CcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVK-GECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRV  223 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~  223 (258)
                      |.....+.|+.|+++.-+.. |..-.|.|...+....+   ..++-+.+++.||+|++|..+.+.+++++|.+-|..+..
T Consensus       530 l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d---~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~  606 (649)
T KOG1179|consen  530 LSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKD---LEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTE  606 (649)
T ss_pred             HhhhccccceeEEEEecCCccCccceEEEEecCcccch---HHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHH
Confidence            99999999999999876553 33444556666655555   478999999999999999999999999999999999999


Q ss_pred             HHHHHhcccccCCCCCCCchHH------HHHHHHHccCCC
Q psy12528        224 LRKVAVNDREVGDKSTLADEDV------VDELFQNRPEGN  257 (258)
Q Consensus       224 l~~~~~~~~~~~~~~~~~~~~~------l~~l~~~~~~~~  257 (258)
                      |++...+.....++-...+++.      .+++++.+..|+
T Consensus       607 L~~egf~p~~~~dply~~~~~~~~y~Plt~~~y~~i~~g~  646 (649)
T KOG1179|consen  607 LQKEGFNPAIISDPLYYLDNAGKSYVPLTQEMYSAISAGE  646 (649)
T ss_pred             HHHccCCccccCCceEEEeccCCccccCCHHHHHHHhcCc
Confidence            9998876654443322222221      345566665554

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.57  E-value=2.3e-14  Score=133.75  Aligned_cols=119  Identities=16%  Similarity=0.135  Sum_probs=88.6

Q ss_pred             CCeeecCceEEEccC-C-----cEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCC
Q psy12528         89 NNSDLLLSSARRDED-G-----YLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP  162 (258)
Q Consensus        89 ~~w~~TGDl~~~d~~-G-----~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~  162 (258)
                      .+||+|||+++++++ |     .+++.||.||+|++.|.++         +|.    +||.+|.+||+|.....+.+...
T Consensus       288 ~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v---------~p~----eie~~l~~~~~v~~~~q~~~~~~  354 (422)
T TIGR02155       288 VIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNV---------FPT----QLEEVILKMDELSPHYQLELTRN  354 (422)
T ss_pred             eeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEE---------CHH----HHHHHHHhCcCcCCCEEEEEEcC
Confidence            479999999999876 4     4789999999999999999         999    99999999999985565656555


Q ss_pred             CCCcEEEEEEEeCCCCC------ccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHH
Q psy12528        163 VKGECLYCFITPAGGAT------FNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRR  222 (258)
Q Consensus       163 ~~~~~~~~~v~~~~~~~------~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~  222 (258)
                      ...+.+.+.++...+..      ....+.++|.+.+++.+.... -..++.+++||+|. ||+.|.
T Consensus       355 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~v~~~~~~~lp~~~-GK~~~~  418 (422)
T TIGR02155       355 GHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSM-DVHLVEPGSLPRSE-GKARRV  418 (422)
T ss_pred             CCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEE-EEEEECCCCccCCC-CCceEE
Confidence            44556777776654321      112235677788888776553 23344457999988 999763

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.52  E-value=7e-14  Score=128.30  Aligned_cols=104  Identities=22%  Similarity=0.249  Sum_probs=82.6

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCC--eeecCceEEEccCCcEEEEeeC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNN--SDLLLSSARRDEDGYLWVTGRV  112 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~--w~~TGDl~~~d~~G~l~~~GR~  112 (258)
                      +.|.+++ +..++.+..|+..+.|+..+.  ||+++++.+...|......  ..++  ||+|||++++|++|+++++||.
T Consensus       303 ~~i~~~~-~~~~~~g~~Gel~v~~~~~~~--gy~~~~~~~~~~~~~~~~~--~~~~~~~~~TGDl~~~d~~g~~~~~gR~  377 (408)
T TIGR01733       303 LYVLDDD-LRPVPVGVVGELYIGGPGVAR--GYLNRPELTAERFVPDPFA--GGDGARLYRTGDLVRYLPDGNLEFLGRI  377 (408)
T ss_pred             EEEECCC-CCCCCCCCceEEEecCccccc--cccCChhhhhcceeeCCCC--CCCCceEEECCceEEEcCCCCEEEeecc
Confidence            3555555 566666665666666665555  9999999998887643211  2233  9999999999999999999999


Q ss_pred             CCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEE
Q psy12528        113 DDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV  156 (258)
Q Consensus       113 ~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~v  156 (258)
                      ||+|+++|.++         +|.    +||+.+.+++.|.+|+|
T Consensus       378 ~~~i~~~G~~v---------~~~----~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       378 DDQVKIRGYRI---------ELG----EIEAALLRHPGVREAVV  408 (408)
T ss_pred             CCEEEeCeEEe---------chH----HHHHHHhcCcchhhhcC
Confidence            99999999999         999    99999999999998764

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>KOG1178|consensus

Probab=99.50  E-value=8.3e-14  Score=140.19  Aligned_cols=128  Identities=20%  Similarity=0.420  Sum_probs=116.1

Q ss_pred             CCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcE
Q psy12528         88 TNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGEC  167 (258)
Q Consensus        88 ~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~  167 (258)
                      .+..|+|||+++.-++|.+.+.||.|++||.+|+++         ...    +|+..+..||.|.++.+....++..++.
T Consensus       452 ~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri---------~L~----ei~t~v~~~p~v~~~itl~~~~~~~~~~  518 (1032)
T KOG1178|consen  452 KARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRI---------ELG----ELNTVVEVHPDVKEAITLARENSTVGQT  518 (1032)
T ss_pred             hhhcccccccceeecCCCEEEEEeccceEEEccEEE---------ehh----hhchhhccCcchhhhheeeeeccccCce
Confidence            467899999999988999999999999999999999         888    9999999999999999999988888899


Q ss_pred             EEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        168 LYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       168 ~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      +.+|++........  +...|+.++...++.|++|..++.++++|+|++||+|+++|.. ..+.
T Consensus       519 l~aFvv~~~~~~~~--~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~-~~s~  579 (1032)
T KOG1178|consen  519 LLAFVVERGGSKSV--LIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGKVDKKALLE-YNSK  579 (1032)
T ss_pred             EEEEEeccCCCCch--hHHHHHHhhcccccceecceEEEEhhhCCcCCCCCcChhhhhh-hhhh
Confidence            99999988765433  3578999999999999999999999999999999999999998 5443

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=99.32  E-value=4.7e-12  Score=89.86  Aligned_cols=70  Identities=37%  Similarity=0.636  Sum_probs=61.4

Q ss_pred             HHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC--cEEEECCC-CCCCCC
Q psy12528        140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP--DVIQHAPR-LPKTRS  216 (258)
Q Consensus       140 ~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p--~~~~~~~~-lP~t~~  216 (258)
                      |||+.+.+||+|.+|+|++.++...++.+++++++      +   .++|+++++++|+++++|  ..++.+++ ||+|+|
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~---~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~   71 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------D---EEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPS   71 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------H---HHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETT
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------e---ecccccchhhhCCCcceeeEEEEccccCcCCCCCC
Confidence            79999999999999999999998888999999988      2   278999999999999999  66666677 999999


Q ss_pred             Cc
Q psy12528        217 GK  218 (258)
Q Consensus       217 GK  218 (258)
                      ||
T Consensus        72 GK   73 (73)
T PF13193_consen   72 GK   73 (73)
T ss_dssp             SS
T ss_pred             CC
Confidence            98

...

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.29  E-value=3.9e-12  Score=117.29  Aligned_cols=75  Identities=27%  Similarity=0.435  Sum_probs=61.7

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.++++++.++.+..|+....|+..+.  ||+++++.++..|.        ++|||+|||+|++|+||+|+++||.||
T Consensus       343 ~~ivd~~~~~~~~~g~~Gei~i~~~~~~~--gy~~~~~~~~~~~~--------~~~~~~TGD~g~~d~~G~~~~~GR~~~  412 (417)
T PF00501_consen  343 VKIVDPNTGEPLPPGEPGEIVIRGPNVFS--GYYNDPELTAEAFI--------DDGWYRTGDLGRLDEDGYLYILGRSDD  412 (417)
T ss_dssp             EEEECTTTSSBESTTSEEEEEEESTTSBS--EETTBHHHHHHHEE--------TTSEEEEEEEEEEETTSEEEEEEEGSC
T ss_pred             cccccccccccccccccccccccCCccce--eeeccccccccccc--------cccceecceEEEECCCCeEEEEEeeCC
Confidence            46777777777777777666666655555  99999999999886        257999999999999999999999999


Q ss_pred             eeEEC
Q psy12528        115 MLNVS  119 (258)
Q Consensus       115 ~i~~~  119 (258)
                      +||+.
T Consensus       413 ~i~~~  417 (417)
T PF00501_consen  413 MIKVR  417 (417)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            99974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PTZ00297 pantothenate kinase; Provisional

Probab=98.96  E-value=3.7e-09  Score=111.36  Aligned_cols=137  Identities=18%  Similarity=0.227  Sum_probs=97.4

Q ss_pred             eecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeE-ECcEEEEeeecccccCCCC
Q psy12528         58 GRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLN-VSGHLMTVYFFGSYCSTAK  136 (258)
Q Consensus        58 G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~-~~G~~v~~~~~~~~~~~~~  136 (258)
                      |+..+   +|+++++.|+.++          ++|+         +||+|.|+||+||+|| .+|++|         .|. 
T Consensus       826 GEIlv---r~~kdpe~T~e~~----------~gW~---------~dG~L~IidRkKdlikls~GEyV---------aP~-  873 (1452)
T PTZ00297        826 GQLVL---AKKGEPRRTLPIA----------AQWK---------RDRTLRLLGPPLGILLPVAYEYV---------IAA-  873 (1452)
T ss_pred             CeEEE---EECCChHHHHHhh----------CcCc---------cCCeEEEEeccccceECCCCcEE---------cHH-
Confidence            44444   4568899888753          3564         6899999999999999 569999         999 


Q ss_pred             CHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC--------------------ccHHHHH----HHHHH-
Q psy12528        137 VFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT--------------------FNQELVK----QLKQQ-  191 (258)
Q Consensus       137 ~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~--------------------~~~~~~~----~l~~~-  191 (258)
                         .||+.+..+|.|.+++|++.+.+    .++|+|++....-                    ..+++.+    .+.+. 
T Consensus       874 ---~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i  946 (1452)
T PTZ00297        874 ---ELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADF  946 (1452)
T ss_pred             ---HHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHH
Confidence               99999999999999999986543    3778887663110                    1122211    22222 


Q ss_pred             --HHH--hcCCCCCCcEEEECCC-C-----CCCCCCcccHHHHHHHHhcccc
Q psy12528        192 --VRE--KIGPFAMPDVIQHAPR-L-----PKTRSGKIMRRVLRKVAVNDRE  233 (258)
Q Consensus       192 --l~~--~l~~~~~p~~~~~~~~-l-----P~t~~GKi~r~~l~~~~~~~~~  233 (258)
                        +.+  ++..+.+++.+.++++ +     -.|++.|+.|..+.+.|++.-+
T Consensus       947 ~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie  998 (1452)
T PTZ00297        947 ACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIE  998 (1452)
T ss_pred             HHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHH
Confidence              222  2556788887777553 3     4899999999999998877543

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=98.72  E-value=9.9e-08  Score=90.10  Aligned_cols=73  Identities=11%  Similarity=-0.017  Sum_probs=48.7

Q ss_pred             eecCceEEEcc-C----C----cEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcC---CCcceEEEEee
Q psy12528         92 DLLLSSARRDE-D----G----YLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH---PDVSEAAVVSR  159 (258)
Q Consensus        92 ~~TGDl~~~d~-~----G----~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~---~~v~~a~vv~~  159 (258)
                      |+|||++++.. +    |    .+...||.||++++.|.++         +|.    +||++|.++   +++..-.-+..
T Consensus       300 YrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~---------~p~----~ie~~l~~~~~~~~~~~~~~~~~  366 (445)
T TIGR03335       300 YDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPF---------NRV----DVERAVFQRENMDSLTGEYEAFL  366 (445)
T ss_pred             eecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEe---------CHH----HHHHHHhccCCCCCCCccEEEEE
Confidence            89999999732 2    2    1445699999999999999         999    999999995   55543332222


Q ss_pred             eCC-CCCcEEEEEEEeCCC
Q psy12528        160 PHP-VKGECLYCFITPAGG  177 (258)
Q Consensus       160 ~~~-~~~~~~~~~v~~~~~  177 (258)
                      ... .....+.+.++..+.
T Consensus       367 ~~~~~~~~~~~v~~e~~~~  385 (445)
T TIGR03335       367 YGEEEGEITLRVSLECEDK  385 (445)
T ss_pred             ecCCCCCceEEEEEEecCc
Confidence            222 223345555665443

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.71  E-value=3.9e-08  Score=96.23  Aligned_cols=85  Identities=24%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      ....++.+..|+....|...-.  ||+++++.++..|...        ++|+|||++++..||.+.++||.|+++|+.|.
T Consensus       558 ~~~~~p~gv~gel~i~g~~~a~--gy~~~p~lt~~~f~~~--------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~  627 (642)
T COG1020         558 GLRPLPLGVPGELYIAGLGLAL--GYLNRPDLTAERFIAL--------RLYRTGDLARPLADGALEYLGRKDSQVKIRGF  627 (642)
T ss_pred             CCCcCCCCCCeeeEECCcchhh--hhcCChhhhHHHhhhc--------cCccCCCeeeECCCCeEEEeccccceeEeceE
Confidence            4555665555555555555555  8999999999999732        48999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCC
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHP  149 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~  149 (258)
                      ++         .+.    +||..+..+|
T Consensus       628 Ri---------el~----eie~~l~~~~  642 (642)
T COG1020         628 RI---------ELG----EIEAALAEQP  642 (642)
T ss_pred             ec---------CcH----HHHHHHhcCC
Confidence            99         888    9999998875

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=98.70  E-value=2.8e-07  Score=85.98  Aligned_cols=148  Identities=22%  Similarity=0.249  Sum_probs=93.1

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccC----C-----cE
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDED----G-----YL  106 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~----G-----~l  106 (258)
                      -|.+|++|+.++      .+..|+++..++-     ..+..+++            |+|||+..+..+    |     .-
T Consensus       271 Ei~dP~t~e~l~------dge~GelV~T~L~-----~~~~PlIR------------YrtgDit~i~~~~C~cGr~~~ri~  327 (438)
T COG1541         271 EIVDPETGEQLP------DGERGELVITTLT-----KEGMPLIR------------YRTGDITVILSDPCGCGRTHRRIE  327 (438)
T ss_pred             eeecCCcCccCC------CCCeeEEEEEecc-----ccCcceEE------------EEcCCeeEecccCCCCCCcccccc
Confidence            566777777666      3455666666431     22233333            899999999653    2     36


Q ss_pred             EEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHH-
Q psy12528        107 WVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELV-  185 (258)
Q Consensus       107 ~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  185 (258)
                      .+.||.||++++.|.+|         +|.    .||+.|.+.+.+..-..+.+......+.+.+-|++.+......+.. 
T Consensus       328 ~I~GR~dD~l~~~G~~v---------fp~----~ie~~l~~~~~~~~~yqi~~~~~~~~d~L~V~vE~~~~~~~~~~~~~  394 (438)
T COG1541         328 RIEGRSDDMLIVRGVNV---------FPS----QIERVLLQIPEVTPHYQIILTRNGGLDELTVRVELENEAEELEDERR  394 (438)
T ss_pred             ccCcccccEEEECCEEe---------CHH----HHHHHHhcccCCCceEEEEEecCCCCceEEEEEEecCcccchHHHHH
Confidence            78899999999999999         999    9999999999998333332333444567778888775422222111 


Q ss_pred             --HHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccH
Q psy12528        186 --KQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMR  221 (258)
Q Consensus       186 --~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r  221 (258)
                        +.+...+...+. ...-..++....+|+|.. |..|
T Consensus       395 ~~~~l~~~~~~~~~-~~~~v~~v~~g~l~r~~~-K~kr  430 (438)
T COG1541         395 LAKKLIKNIKSELG-VRVEVELVEPGELPRTEG-KAKR  430 (438)
T ss_pred             HHHHHHHHHHhhcC-CceEEEEEeccceecccC-ceeE
Confidence              233333333222 222344555677999987 6543

>KOG3628|consensus

Probab=98.45  E-value=3.7e-06  Score=84.72  Aligned_cols=175  Identities=15%  Similarity=0.171  Sum_probs=115.8

Q ss_pred             eEEEEeCCCCCcCCCCCCCCCeEEeecccccccccCC-hHHHhhhcccCCCcCcC-CCCeeecCceEEE------ccC--
Q psy12528         34 QISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNT-SKVRAQLLHGHNNFSFT-TNNSDLLLSSARR------DED--  103 (258)
Q Consensus        34 ~~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~-~~~~~~~~~~~~~~~~~-~~~w~~TGDl~~~------d~~--  103 (258)
                      .++|..|++-..+..++.|+..+.+..--.  +|++- .+....-|....-.... ..+|.||||+|+.      |..  
T Consensus      1163 ~i~IvnPEtk~pc~dge~GEIW~~S~hnA~--~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e 1240 (1363)
T KOG3628|consen 1163 DIAIVNPETKGPCRDGELGEIWVNSAHNAS--CSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVE 1240 (1363)
T ss_pred             eeEEeCCccccccccCCcceEEeccccccc--cccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccce
Confidence            478999998777776666654444433222  23221 12333333322222222 5689999999997      222  


Q ss_pred             --CcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHH-cCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCc
Q psy12528        104 --GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLA-SHPDVSEAAVVSRPHPVKGECLYCFITPAGGATF  180 (258)
Q Consensus       104 --G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~-~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~  180 (258)
                        .-||++|-.++.+.++|.+.         +|.    +||..+. .||.|..|+|+-     ++..+++++++.. ...
T Consensus      1241 ~~~~LyVlG~i~EtlEl~GL~h---------~p~----DIE~TV~~vH~~I~~cavF~-----~~glvVvviE~~g-q~~ 1301 (1363)
T KOG3628|consen 1241 RHDLLYVLGAIDETLELNGLRH---------FPS----DIETTVERVHPSIGGCAVFQ-----ATGLVVVVIECHG-QQE 1301 (1363)
T ss_pred             eeeeEEEeecccceeeecCccc---------Ccc----hHHHHHHHhcccccceeeEe-----eCCeEEEEEEecC-chh
Confidence              35999999999999999999         999    9999666 699999999984     3557777777776 222


Q ss_pred             cHHHHHHHHHHHHHhcCCCCCC-cEEEECCC--CCCCCCCcccHHHHHHHHhccc
Q psy12528        181 NQELVKQLKQQVREKIGPFAMP-DVIQHAPR--LPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       181 ~~~~~~~l~~~l~~~l~~~~~p-~~~~~~~~--lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ..+++..+...+   |..+.+. ..+.+++.  +|+.+.|.-+|..+++.+..++
T Consensus      1302 ~~~LvPlIv~~v---L~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~k 1353 (1363)
T KOG3628|consen 1302 LADLVPLIVNVV---LEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGK 1353 (1363)
T ss_pred             HhhhhHHHHHHH---HhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcc
Confidence            223333333333   4444433 44555554  9999999999999999887765

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=97.52  E-value=0.00042  Score=51.66  Aligned_cols=83  Identities=18%  Similarity=0.243  Sum_probs=52.6

Q ss_pred             CCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCc----cHHHHHHHHHHHHHhcCCCCCCcEEEEC
Q psy12528        133 STAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATF----NQELVKQLKQQVREKIGPFAMPDVIQHA  208 (258)
Q Consensus       133 ~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~p~~~~~~  208 (258)
                      +|.    .||++|.++|++.....+.+......+.+.+.|+...+...    .+++.+++.+.+++.+.-.. -..++..
T Consensus         5 fP~----~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~-~V~lv~~   79 (96)
T PF14535_consen    5 FPS----QIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRP-EVELVPP   79 (96)
T ss_dssp             -HH----HHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-E-EEEEE-T
T ss_pred             CHH----HHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceE-EEEEECC
Confidence            888    99999999999995555555544557788888888876532    34566777777878765322 3334445


Q ss_pred             CCCCCCCCCcccH
Q psy12528        209 PRLPKTRSGKIMR  221 (258)
Q Consensus       209 ~~lP~t~~GKi~r  221 (258)
                      ..+|++ .||..|
T Consensus        80 gtLpr~-~~K~~R   91 (96)
T PF14535_consen   80 GTLPRS-EGKAKR   91 (96)
T ss_dssp             T-S----SSSS-S
T ss_pred             CCccCC-CCcceE
Confidence            569998 678765

>KOG3628|consensus

Probab=95.55  E-value=0.12  Score=53.44  Aligned_cols=197  Identities=14%  Similarity=0.044  Sum_probs=111.8

Q ss_pred             ceecCCCCCce--EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcC----cCCCCeeecCce
Q psy12528         24 FTVLGQVTVPQ--ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFS----FTTNNSDLLLSS   97 (258)
Q Consensus        24 ~~~yG~te~~~--~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~----~~~~~w~~TGDl   97 (258)
                      .+-||..+.+.  +++..|++-.=+..++.||+++.....-.  .|+.-+.++...|.-.+...    .....+.+||=+
T Consensus       501 ~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~--~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLl  578 (1363)
T KOG3628|consen  501 VKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGK--LFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLL  578 (1363)
T ss_pred             ccccceecccceEEEEeCCCcccccccCcceeEEEecCCccc--ceeeccccccceEEeeeccccCCCCccchhhhhcce
Confidence            45566666554  46777776666777777776666555544  78777888877776544332    223457899999


Q ss_pred             EEEccCCcEEEEeeCCCeeE-ECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCC
Q psy12528         98 ARRDEDGYLWVTGRVDDMLN-VSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAG  176 (258)
Q Consensus        98 ~~~d~~G~l~~~GR~~d~i~-~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~  176 (258)
                      |++. .|.++++|=++|++- +.|....+.   --+...|--.-++.+.+..+.|.++.++-      .+.+.++++-.+
T Consensus       579 GFv~-~gki~vl~~k~d~llq~~~~~h~~d---~iv~thya~~~iktV~R~v~~VF~~saf~------~E~~~Vv~~esP  648 (1363)
T KOG3628|consen  579 GFVH-NGKIYVLGLKEDGLLQVSGWRHNAD---DIVATHYAVELIKTVMRGVIAVFDVSAFE------DEHIVVVVLESP  648 (1363)
T ss_pred             eeee-CCeEEEEEechhhhhhhhhhhhhhh---hhHhhHHHHHHHHHHHhccceEEEEeeee------cceEEEEEEeCc
Confidence            9995 566777766655554 555444000   00011122224555666678888888885      223333333333


Q ss_pred             CCC-ccH-HHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        177 GAT-FNQ-ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       177 ~~~-~~~-~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ... .+. +-..++-+.+..-+.---.-..++..+.+|+|+-|-|.-.++++.|.+..
T Consensus       649 ~a~e~~~~q~~~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~~G~  706 (1363)
T KOG3628|consen  649 DATEENSFQWMSRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFLEGS  706 (1363)
T ss_pred             chhhhhhhhHHHHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHHcCC
Confidence            221 111 01122223332211111111334555679999988899999999997764

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=93.74  E-value=0.5  Score=44.74  Aligned_cols=55  Identities=25%  Similarity=0.318  Sum_probs=38.9

Q ss_pred             eecCceEEEccC----Cc----E-EEEeeCCCeeEE---CcEEEEeeecccccCCCCCHHHHHHHHH-cCCCcceEEEE
Q psy12528         92 DLLLSSARRDED----GY----L-WVTGRVDDMLNV---SGHLMTVYFFGSYCSTAKVFTEVEACLA-SHPDVSEAAVV  157 (258)
Q Consensus        92 ~~TGDl~~~d~~----G~----l-~~~GR~~d~i~~---~G~~v~~~~~~~~~~~~~~~~~iE~~l~-~~~~v~~a~vv  157 (258)
                      |+|||++.+..+    |.    + .|.||.+|++++   +|..+.+       +|.    .++..+. ..++|.+.-++
T Consensus       297 YrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v-------~p~----~~~~~i~~~~~~i~~yQi~  364 (430)
T TIGR02304       297 YRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTV-------FPD----FIRRVILFTLPLIVEYRVL  364 (430)
T ss_pred             eeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEe-------CHH----HHHHHHHhcCCCCceEEEE
Confidence            899999988543    32    3 478999999985   3555433       777    8888744 56788776555

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=90.58  E-value=0.4  Score=46.53  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             eecCceEEEcc--CC--cEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcC---CC--cceEEEEeeeCC
Q psy12528         92 DLLLSSARRDE--DG--YLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH---PD--VSEAAVVSRPHP  162 (258)
Q Consensus        92 ~~TGDl~~~d~--~G--~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~---~~--v~~a~vv~~~~~  162 (258)
                      |+.||+++++.  ++  .+.|+||.+.++++.|.++         +-.    +++.++.+.   .+  +.+-.+.+....
T Consensus       371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl---------~e~----~v~~av~~~~~~~~~~~~~f~~~~~~~~  437 (528)
T PF03321_consen  371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKL---------SEE----QVQEAVARALQETGLELRDFTVAPDPSS  437 (528)
T ss_dssp             EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--E---------EHH----HHHHHHHHHHHCTT-EEEEEEEEEE--S
T ss_pred             eecCCEEEEeeccCCCcEEEEeccCCceeecceeec---------CHH----HHHHHHHHHHHhcCCceeeEEEEeeccc
Confidence            78999999842  34  6999999999999999999         777    888877764   33  344444444212


Q ss_pred             CCCcEEEEEEEeCCC
Q psy12528        163 VKGECLYCFITPAGG  177 (258)
Q Consensus       163 ~~~~~~~~~v~~~~~  177 (258)
                      .....-+.++++...
T Consensus       438 ~~~~~Y~~~~e~~~~  452 (528)
T PF03321_consen  438 GNPPHYVLFWELEGE  452 (528)
T ss_dssp             SSSBEEEEEEEECS-
T ss_pred             CCCCceEEEEEeCCC
Confidence            222344556666654

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=83.37  E-value=2.7  Score=38.90  Aligned_cols=25  Identities=28%  Similarity=0.207  Sum_probs=19.1

Q ss_pred             CeeecCceEEEccC--------CcEEEEeeCCC
Q psy12528         90 NSDLLLSSARRDED--------GYLWVTGRVDD  114 (258)
Q Consensus        90 ~w~~TGDl~~~d~~--------G~l~~~GR~~d  114 (258)
                      +...|.|+|.+..+        .++.++||.+.
T Consensus       318 ~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  318 GFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             cEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            44779999987543        27999999864

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		2e-38
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-38
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		2e-38
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-38
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		7e-38
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		7e-38
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		9e-38
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		1e-27
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		4e-17
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-16
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-16
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		5e-10
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		7e-10
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		9e-10
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-08
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		5e-08
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		8e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-06
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-06
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		3e-06
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		3e-06
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		6e-06
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		3e-05
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		3e-05
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		6e-05
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-04
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		4e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		8e-04

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+TGRVDD+LNVSGH +                E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH +KG+ +Y ++T   G   + EL  +++  VR++IGP A PDV+     LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           KIMRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+TGRVDD+LNVSGH +                E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH +KG+ +Y ++T   G   + EL  +++  VR++IGP A PDV+     LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           KIMRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+TGRVDD+LNVSGH +                E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH +KG+ +Y ++T   G   + EL  +++  VR++IGP A PDV+     LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           KIMRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+TGRVDD+LNVSGH +                E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH +KG+ +Y ++T   G   + EL  +++  VR++IGP A PDV+     LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           KIMRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score =  154 bits (388), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 102/157 (64%), Gaps = 14/157 (8%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+TGRVDD+LNVSGH +                E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH +KG+ +Y ++T   G   + EL  +++  VR++IGP A PDV+     LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
            IMRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 609 AIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 102/157 (64%), Gaps = 14/157 (8%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+TGRVDD+LNVSGH +                E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH +KG+ +Y ++T   G   + EL  +++  V ++IGP A PDV+     LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           KIMRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 102/157 (64%), Gaps = 14/157 (8%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+TGRVDD+LNVSGH +                E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH +KG+ +Y ++T   G   + EL  +++  V ++IGP A PDV+     LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           KIMRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 128/250 (51%), Gaps = 38/250 (15%)
Query: 14  PARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLK---FQNT 70
           P +PG   F F  +  V      +L+P  G++LN T      L  + A  S     ++N 
Sbjct: 438 PMKPGSASFPFFGIDAV------VLDPNTGEELN-TSHAEGVLAVKAAWPSFARTIWKNH 490
Query: 71  SKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS 130
            +     L+ +  + FT +        A +D+DGY+W+ GRVDD++NVSGH +       
Sbjct: 491 DRYLDTYLNPYPGYYFTGDG-------AAKDKDGYIWILGRVDDVVNVSGHRL------- 536
Query: 131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-------QE 183
             STA    E+EA +   P V+E AVV     + G+ +  F+     ++++       Q+
Sbjct: 537 --STA----EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQD 590
Query: 184 LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-EVGDKSTLAD 242
           + K L   VR+ IGPFA P +I     LPKTRSGKIMRR+LRK+   +  ++GD STL++
Sbjct: 591 IKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSN 650
Query: 243 EDVVDELFQN 252
             +V  L  +
Sbjct: 651 PGIVRHLIDS 660

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A  DEDGYLW  GR DD++  SG+ +  +             EVE+ L  HP V E A+ 
Sbjct: 460 AWMDEDGYLWFVGRADDIIKTSGYKVGPF-------------EVESALIQHPAVLECAIT 506
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P PV+G+ +   I      T +  L  +L+  V+    P+  P +I+  P LPKT SG
Sbjct: 507 GVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISG 566
Query: 218 KIMRRVLR 225
           KI R  +R
Sbjct: 567 KIRRVEIR 574

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 93  LLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVS 152
           LL     +DEDGY    GR DD++N SG     Y  G         +EVE  L  HP V 
Sbjct: 436 LLGDRGIKDEDGYFQFMGRADDIINSSG-----YRIGP--------SEVENALMEHPAVV 482
Query: 153 EAAVVSRPHPVKGECLYCFITPAGGATFN--QELVKQLKQQVREKIGPFAMPDVIQHAPR 210
           E AV+S P PV+GE +  F+  A     +  ++L K+L+Q V+    P+  P  I+    
Sbjct: 483 ETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN 542
Query: 211 LPKTRSGKIMRRVLR 225
           LPKT +GKI R  LR
Sbjct: 543 LPKTVTGKIQRAKLR 557

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 93  LLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVS 152
           LL     +DEDGY    GR DD++N SG     Y  G         +EVE  L  HP V 
Sbjct: 436 LLGDRGIKDEDGYFQFMGRADDIINSSG-----YRIGP--------SEVENALMEHPAVV 482
Query: 153 EAAVVSRPHPVKGECLYCFITPAGGATFN--QELVKQLKQQVREKIGPFAMPDVIQHAPR 210
           E AV+S P PV+GE +  F+  A     +  ++L K+L+Q V+    P+  P  I+    
Sbjct: 483 ETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN 542
Query: 211 LPKTRSGKIMRRVLR 225
           LPKT +GKI R  LR
Sbjct: 543 LPKTVTGKIQRAKLR 557

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE+GY+ +  R+ D++   G  ++               ++E  L  HP V EAAVV+ P
Sbjct: 423 DEEGYVEIKDRLKDLIKSGGEWISS-------------VDLENALMGHPKVKEAAVVAIP 469
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
           HP   E     + P G     +EL + L   ++     + +PD    A  +P+T +GK +
Sbjct: 470 HPKWQERPLAVVVPRGEKPTPEELNEHL---LKAGFAKWQLPDAYVFAEEIPRTSAGKFL 526
Query: 221 RRVLRK 226
           +R LR+
Sbjct: 527 KRALRE 532

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 81  HNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE 140
           HN  SFT +         R   DGY+ V GR  D +N  G  +                E
Sbjct: 398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAA-------------EE 444
Query: 141 VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFA 200
           VE  L +HP V +AA+VS P    GE    FI P   A    EL   L+++    +  + 
Sbjct: 445 VENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRER---GLAAYK 501
Query: 201 MPDVIQHAPRLPKTRSGKIMRRVLRKV 227
           +PD ++     P+T  GK+ ++ LR+ 
Sbjct: 502 IPDRVEFVESFPQTGVGKVSKKALREA 528

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 81  HNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE 140
           HN  SFT +         R   DGY+ V GR  D +N  G  +                E
Sbjct: 398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAA-------------EE 444
Query: 141 VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFA 200
           VE  L +HP V +AA VS P    GE    FI P   A    EL   L+++    +  + 
Sbjct: 445 VENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKAFLRER---GLAAYK 501
Query: 201 MPDVIQHAPRLPKTRSGKIMRRVLRKV 227
           +PD ++     P+T  GK+ ++ LR+ 
Sbjct: 502 IPDRVEFVESFPQTGVGKVSKKALREA 528

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 98  ARRDEDGYLWVTGR-VDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
           A RD DGY+ + GR   D++   G     Y  G+         E+E  L  HP+V EAAV
Sbjct: 390 AVRDPDGYVRIVGRKATDLIKSGG-----YKIGA--------GEIENALLEHPEVREAAV 436
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
              P P  GE +  +I PA         +  L   V  ++ P   P V+++   +P+   
Sbjct: 437 TGEPDPDLGERIVAWIVPA--DPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDM 494
Query: 217 GKIMRRVLRK 226
           GKIM+R L +
Sbjct: 495 GKIMKRALNR 504

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE+G+L    RV +++   G+ +  +             E+EA L  H  V + AV+ +P
Sbjct: 427 DEEGFLHFQDRVKEVIKYKGYTIAPF-------------ELEALLXKHEAVXDVAVIGKP 473
Query: 161 HPVKGECLYCFIT--PAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
               GE    FI   P      ++E    + + VRE+I  +     ++    LP+T SGK
Sbjct: 474 DEEAGEVPKAFIVLKPEYRGKVDEE---DIIEWVRERISGYKRVREVEFVEELPRTASGK 530
Query: 219 IMRRVLRK 226
           ++RR+LR+
Sbjct: 531 LLRRLLRE 538

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE GY+ + GR  D++   G       F  Y        E+E+ + + P V E+AV+  P
Sbjct: 387 DERGYVHILGRGXDLVITGG-------FNVYPX------EIESEIDAMPGVVESAVIGVP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
           H   GE +  F+        ++ L ++L   V +++  F MP  +     LP+   G + 
Sbjct: 434 HADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQ 493
Query: 221 RRVLRK 226
             VLR+
Sbjct: 494 XNVLRE 499

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)
Query: 81  HNNFSFTTN----NSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK 136
           HN  +F  N    + DL+      D +GY+ V GR  D +N  G  +             
Sbjct: 402 HNASAFDANGFYCSGDLI----SIDPEGYITVQGREKDQINRGGEKIAA----------- 446
Query: 137 VFTEVEACLASHPDVSEAAVVSRPHPVKGE--CLYCFITPAGGATFNQELVKQLKQQVRE 194
              E+E  L  HP V  AA+VS    + GE  C Y  +     A        Q+++ +RE
Sbjct: 447 --EEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAV-------QVRRFLRE 497
Query: 195 K-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELF 250
           + I  F +PD ++    LP T  GK+ ++ LR+   +    G  S  A +  + E+ 
Sbjct: 498 QGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALREVI 554

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE GY+ + GR  D++   G       F  Y        E+E+ + + P V E+AV+  P
Sbjct: 387 DERGYVHILGRGXDLVITGG-------FNVYPX------EIESEIDAMPGVVESAVIGVP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
           H   GE +   +    GAT ++    Q+   +  ++  F MP  +     LP+   G + 
Sbjct: 434 HADFGEGVTAVVVRDXGATIDE---AQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQ 490
Query: 221 RRVLRK 226
             VLR+
Sbjct: 491 XNVLRE 496

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE GY+ + GR  D++   G       F  Y        E+E+ + + P V E+AV+  P
Sbjct: 387 DERGYVHILGRGKDLVITGG-------FNVYPK------EIESEIDAXPGVVESAVIGVP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
           H   GE +   +    GAT ++    Q+   +  ++  F  P  +     LP+   GK+ 
Sbjct: 434 HADFGEGVTAVVVRDKGATIDE---AQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQ 490
Query: 221 RRVLRK 226
           + VLR+
Sbjct: 491 KNVLRE 496

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           D++GYL++  R+ DM+   G    VY             E+E+ +   P VSE AV+  P
Sbjct: 401 DDEGYLYIKDRLKDMIISGGE--NVYP-----------AEIESVIIGVPGVSEVAVIGLP 447
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
               GE     +     A  N+   +Q+ +    ++  + +P  +  A  +P+  +GKI+
Sbjct: 448 DEKWGEIAAAIVV----ADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKIL 503
Query: 221 RRVLRK 226
           + VLR+
Sbjct: 504 KTVLRE 509

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR 159
           R  +G     GR DDML VSG          Y S      EVE  L  H  V EAAVV  
Sbjct: 416 RLPNGCYVYAGRSDDMLKVSGQ---------YVSP----VEVEMVLVQHDAVLEAAVVGV 462
Query: 160 PHP--VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
            H   VK      F+        ++ L ++LK  V++++ P   P  I     LPKT +G
Sbjct: 463 DHGGLVKTRA---FVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATG 519
Query: 218 KIMRRVLRK 226
           KI R  LR+
Sbjct: 520 KIQRFKLRE 528

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 139 TEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGP 198
            E+EA L  HPD+++ AVV+      GE    F+  +  +  +++ VKQ    V +++  
Sbjct: 494 AELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQF---VSKQVVF 550
Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN 230
           +   + +     +PK  SGKI+R+ LR    N
Sbjct: 551 YKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           AR   DG +   GR+DD + + GH + +              E+E  L  +P V +A VV
Sbjct: 846 ARWLPDGTIEYAGRIDDQVKIRGHRIEL-------------EEIEKQLQEYPGVKDAVVV 892
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELV-------KQLKQQVREKIGPFAMPDVIQHAPR 210
           +  H             +G A+ N  LV       + +K  +++++  + +P        
Sbjct: 893 ADRHE------------SGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDE 940
Query: 211 LPKTRSGKIMRRVLRK 226
           LP T +GK+ +R+L K
Sbjct: 941 LPLTTNGKVNKRLLPK 956

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 81  HNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE 140
           HN+  F  +N        +R  DG L V GR+ D +N  G  +                E
Sbjct: 407 HNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIAS-------------EE 453
Query: 141 VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQEL-VKQLKQQVRE-KIGP 198
           +E  +  HP+V  AA+V+      GE    FI      + N EL    L++ + E  I  
Sbjct: 454 IEKLILLHPEVMHAALVAIVDEQFGEKSCAFIV-----SRNPELKAVVLRRHLMELGIAQ 508
Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVLRKV 227
           + +PD I+    LP T  GK+ ++ LR +
Sbjct: 509 YKLPDQIKLIESLPLTAVGKVDKKQLRSI 537

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
           DE GY+ + GR  D++   G       F  Y        E+E+ + + P V E+AV+  P
Sbjct: 387 DERGYVHILGRGXDLVITGG-------FNVYPX------EIESEIDAMPGVVESAVIGVP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELV---KQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           H   GE +  F+         +E      Q+   +  ++  F MP  +     LP+   G
Sbjct: 434 HADFGEGVTAFV------VLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMG 487
Query: 218 KIMRRVLRK 226
            +   VLR+
Sbjct: 488 AVQXNVLRE 496

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARR  DG L   GR DD + + G  +                EVEA L  HP V +AAV+
Sbjct: 454 ARRRADGVLEYVGRADDQVKIRGFRVEP-------------GEVEARLVGHPAVRQAAVL 500
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           ++   +  + L  ++  A  A    +   +L++ V E +  + +P        LP+T +G
Sbjct: 501 AQDSRLGDKQLVAYVV-AERADAPPD-AAELRRHVAEALPAYMVPVECVPVDELPRTPNG 558
Query: 218 KIMRRVL 224
           K+ RR L
Sbjct: 559 KLDRRAL 565

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV- 156
           AR   DG +   GR+D+ + + GH + +              EVE+ L  H  +SE AV 
Sbjct: 415 ARWLSDGNIEYLGRIDNQVKIRGHRVEL-------------EEVESILLKHMYISETAVS 461
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V + H  +      F++           ++QL+Q   E++  + +P       ++P T +
Sbjct: 462 VHKDHQEQPYLCAYFVSEKHIP------LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSN 515
Query: 217 GKIMRRVL 224
           GKI R+ L
Sbjct: 516 GKIDRKQL 523

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-79
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	3e-76
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	3e-51
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	6e-43
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	1e-35
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-27
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-27
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-26
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	5e-26
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	6e-26
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-25
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-25
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-25
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-24
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-24
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-22
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-21
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	7e-21
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-18
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-18
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	3e-10
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-10
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	8e-10
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-09
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-08
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	3e-08
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	5e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	6e-07
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	3e-05
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-04

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score =  250 bits (642), Expect = 2e-79
 Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 14/159 (8%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           ARRDEDGY W+TGRVDD+LNVSGH +          TA    E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRL---------GTA----EIESALVAHPKIAEAAVV 548

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH +KG+ +Y ++T   G   + EL  +++  VR++IGP A PDV+     LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608

Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNRPE 255
           KIMRR+LRK+A  D   +GD STLAD  VV++L + +  
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQA 647

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score =  242 bits (621), Expect = 3e-76
 Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 21/164 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A +D+DGY+W+ GRVDD++NVSGH +         STA    E+EA +   P V+E AVV
Sbjct: 511 AAKDKDGYIWILGRVDDVVNVSGHRL---------STA----EIEAAIIEDPIVAECAVV 557

Query: 158 SRPHPVKGECLYCFITPAGGATFN-------QELVKQLKQQVREKIGPFAMPDVIQHAPR 210
                + G+ +  F+     ++++       Q++ K L   VR+ IGPFA P +I     
Sbjct: 558 GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDD 617

Query: 211 LPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNR 253
           LPKTRSGKIMRR+LRK+   + + +GD STL++  +V  L  + 
Sbjct: 618 LPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDSV 661

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  174 bits (444), Expect = 3e-51
 Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
            A  DEDGYLW  GR DD++  SG+ +                EVE+ L  HP V E A+
Sbjct: 459 MAWMDEDGYLWFVGRADDIIKTSGYKV---------GPF----EVESALIQHPAVLECAI 505

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
              P PV+G+ +   I      T +  L  +L+  V+    P+  P +I+  P LPKT S
Sbjct: 506 TGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTIS 565

Query: 217 GKIMRRVLRKVA 228
           GKI R  +R   
Sbjct: 566 GKIRRVEIRDKD 577

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  152 bits (386), Expect = 6e-43
 Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 97  SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
              +DEDGY    GR DD++N SG+ +           +    EVE  L  HP V E AV
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRI---------GPS----EVENALMEHPAVVETAV 486

Query: 157 VSRPHPVKGECLYCFITPAGG--ATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
           +S P PV+GE +  F+  A    +   ++L K+L+Q V+    P+  P  I+    LPKT
Sbjct: 487 ISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKT 546

Query: 215 RSGKIMRRVLRK 226
            +GKI R  LR 
Sbjct: 547 VTGKIQRAKLRD 558

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  132 bits (334), Expect = 1e-35
 Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
             R  +G     GR DDML VSG    V              EVE  L  H  V EAAVV
Sbjct: 414 YCRLPNGCYVYAGRSDDMLKVSG--QYVSPV-----------EVEMVLVQHDAVLEAAVV 460

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
              H         F+        ++ L ++LK  V++++ P   P  I     LPKT +G
Sbjct: 461 GVDHG-GLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATG 519

Query: 218 KIMRRVLRK 226
           KI R  LR+
Sbjct: 520 KIQRFKLRE 528

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  108 bits (273), Expect = 3e-27
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 17/151 (11%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
              D +GY+ V GR  D +N  G    +         A+   E+E  L  HP V  AA+V
Sbjct: 419 ISIDPEGYITVQGREKDQINRGG--EKIA--------AE---EIENLLLRHPAVIYAALV 465

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           S    + GE    ++          ++ + L++Q    I  F +PD ++    LP T  G
Sbjct: 466 SMEDELMGEKSCAYLVVKEPLRA-VQVRRFLREQ---GIAEFKLPDRVECVDSLPLTAVG 521

Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDE 248
           K+ ++ LR+   +    G  S  A +  + E
Sbjct: 522 KVDKKQLRQWLASRASAGRASIPASKAALRE 552

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  108 bits (271), Expect = 3e-27
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            + DE GY+ + GR  D++   G    VY             E+E+ + + P V E+AV+
Sbjct: 384 GKIDERGYVHILGRGKDLVITGG--FNVYP-----------KEIESEIDAMPGVVESAVI 430

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             PH   GE +   +    GAT ++    Q+   +  ++  F MP  +     LP+   G
Sbjct: 431 GVPHADFGEGVTAVVVRDKGATIDEA---QVLHGLDGQLAKFKMPKKVIFVDDLPRNTMG 487

Query: 218 KIMRRVLRK 226
           K+ + VLR+
Sbjct: 488 KVQKNVLRE 496

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  106 bits (267), Expect = 2e-26
 Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            +R  DG L V GR+ D +N  G    +         ++   E+E  +  HP+V  AA+V
Sbjct: 424 VQRTPDGNLRVVGRIKDQINRGG--EKIA--------SE---EIEKLILLHPEVMHAALV 470

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           +      GE    FI           L + L       I  + +PD I+    LP T  G
Sbjct: 471 AIVDEQFGEKSCAFIVSRNPELKAVVLRRHLM---ELGIAQYKLPDQIKLIESLPLTAVG 527

Query: 218 KIMRRVLRK 226
           K+ ++ LR 
Sbjct: 528 KVDKKQLRS 536

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  104 bits (263), Expect = 5e-26
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 18/129 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A  D +GY+ +  R  D++   G    +Y             ++E      P +S+A  V
Sbjct: 383 AEIDHEGYVMIYDRRKDLIISGG--ENIY-------PY----QIETVAKQFPGISDAVCV 429

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P    G+    +       +       QL   + + +  + +P   +    LP T +G
Sbjct: 430 GHPDDTWGQVPKLYFVSESDIS-----KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTG 484

Query: 218 KIMRRVLRK 226
           K+ R  L +
Sbjct: 485 KLQRNKLYR 493

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  104 bits (263), Expect = 6e-26
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 17/129 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
              D++GYL++  R+ DM+   G          Y +      E+E+ +   P VSE AV+
Sbjct: 398 GEIDDEGYLYIKDRLKDMIISGG-------ENVYPA------EIESVIIGVPGVSEVAVI 444

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
             P    GE     +         Q++V    +    ++  + +P  +  A  +P+  +G
Sbjct: 445 GLPDEKWGEIAAAIVVADQNEVSEQQIV----EYCGTRLARYKLPKKVIFAEAIPRNPTG 500

Query: 218 KIMRRVLRK 226
           KI++ VLR+
Sbjct: 501 KILKTVLRE 509

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  103 bits (260), Expect = 2e-25
 Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
            R   DGY+ V GR  D +N  G    V         A+   EVE  L +HP V +AA+V
Sbjct: 415 VRLTRDGYIVVEGRAKDQINRGG--EKVA--------AE---EVENHLLAHPAVHDAAMV 461

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           S P    GE    FI P   A    EL   L+++    +  + +PD ++     P+T  G
Sbjct: 462 SMPDQFLGERSCVFIIPRDEAPKAAELKAFLRER---GLAAYKIPDRVEFVESFPQTGVG 518

Query: 218 KIMRRVLRKVAV 229
           K+ ++ LR+   
Sbjct: 519 KVSKKALREAIS 530

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  103 bits (258), Expect = 2e-25
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 18/131 (13%)

Query: 98  ARRDEDGYLWVTGR-VDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
           A RD DGY+ + GR   D++   G    +         A    E+E  L  HP+V EAAV
Sbjct: 390 AVRDPDGYVRIVGRKATDLIKSGG--YKIG--------AG---EIENALLEHPEVREAAV 436

Query: 157 VSRPHPVKGECLYCFITPA-GGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
              P P  GE +  +I PA   A         L   V  ++ P   P V+++   +P+  
Sbjct: 437 TGEPDPDLGERIVAWIVPADPAAPPALG---TLADHVAARLAPHKRPRVVRYLDAVPRND 493

Query: 216 SGKIMRRVLRK 226
            GKIM+R L +
Sbjct: 494 MGKIMKRALNR 504

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  101 bits (255), Expect = 7e-25
 Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 98  ARRDEDGYLWVTGRVD--DMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAA 155
            R D DGYL+  GR    +++   G          Y        EVE  L  HP +++A 
Sbjct: 383 GRFDADGYLFYAGRAPEKELIKTGG-------ENVYP------AEVEGALKQHPAIADAV 429

Query: 156 VVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
           V+  P P   E +        G +   +    L + V   I  +  P  +     LPK  
Sbjct: 430 VIGVPDPQWSEAIKAVCVCKPGESIAAD---ALAEFVASLIARYKKPKHVVFVEALPKDA 486

Query: 216 SGKIMRRVLRK 226
            G I R  ++ 
Sbjct: 487 KGAIDRAAVKT 497

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  100 bits (251), Expect = 2e-24
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A    +G + + GRVDDM+   G          + S      E+E  L + P V+E  V+
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGG-------ENIHPS------EIERVLGTAPGVTEVVVI 433

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVR-EKIGPFAMPDVIQHAPRLPKTRS 216
                  G+ +   + P  G T + +    L    R  ++  F  P       +LPK   
Sbjct: 434 GLADQRWGQSVTACVVPRLGETLSAD---ALDTFCRSSELADFKRPKRYFILDQLPKNAL 490

Query: 217 GKIMRRVLRK 226
            K++RR L +
Sbjct: 491 NKVLRRQLVQ 500

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =   99 bits (250), Expect = 3e-24
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              DE+G+L    RV +++   G+               +   E+EA L  H  V + AV
Sbjct: 424 GFIDEEGFLHFQDRVKEVIKYKGY--------------TIAPFELEALLMKHEAVMDVAV 469

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           + +P    GE    FI          +  + + + VRE+I  +     ++    LP+T S
Sbjct: 470 IGKPDEEAGEVPKAFIVLKPEYRGKVD-EEDIIEWVRERISGYKRVREVEFVEELPRTAS 528

Query: 217 GKIMRRVLRK 226
           GK++RR+LR+
Sbjct: 529 GKLLRRLLRE 538

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 94.9 bits (237), Expect = 2e-22
 Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 18/130 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              D+D  L++  R+ +++   G               +V   E+EA L +HP++S+AAV
Sbjct: 419 GYIDDDDELFIVDRLKELIKYKGF--------------QVAPAELEALLIAHPEISDAAV 464

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V       GE    F+  +  +   ++   ++KQ + +++  +     +     +PK  S
Sbjct: 465 VGLKDEDAGEVPVAFVVKSEKSQATED---EIKQYISKQVIFYKRIKRVFFIEAIPKAPS 521

Query: 217 GKIMRRVLRK 226
           GKI+R+ L++
Sbjct: 522 GKILRKNLKE 531

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 91.1 bits (227), Expect = 3e-21
 Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 20/145 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
           A  DED + ++  R+  ++   G+              +V   E+E+ L  HP++ +A V
Sbjct: 424 AYWDEDEHFFIVDRLKSLIKYKGY--------------QVAPAELESILLQHPNIFDAGV 469

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF-AMPDVIQHAPRLPKTR 215
              P    GE     +    G T  ++   ++   V  ++     +   +     +PK  
Sbjct: 470 AGLPDDDAGELPAAVVVLEHGKTMTEK---EIVDYVASQVTTAKKLRGGVVFVDEVPKGL 526

Query: 216 SGKIMRRVLRKVAVNDREVGDKSTL 240
           +GK+  R +R++ +  ++ G KS L
Sbjct: 527 TGKLDARKIREILIKAKK-GGKSKL 550

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 90.3 bits (225), Expect = 7e-21
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 19/133 (14%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              DE+ + ++  R+  ++   G+              +V   E+E+ L  HP + +A V
Sbjct: 426 GYYDEEKHFFIVDRLKSLIKYKGY--------------QVPPAELESVLLQHPSIFDAGV 471

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF-AMPDVIQHAPRLPKTR 215
              P PV GE     +    G    ++   ++   V  ++     +   ++    +PK  
Sbjct: 472 AGVPDPVAGELPGAVVVLESGKNMTEK---EVMDYVASQVSNAKRLRGGVRFVDEVPKGL 528

Query: 216 SGKIMRRVLRKVA 228
           +GKI  R +R++ 
Sbjct: 529 TGKIDGRAIREIL 541

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 84.3 bits (209), Expect = 1e-18
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 18/137 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
              D+D  L++  R+ +++   G               +V   E+EA L  HPD+++ AV
Sbjct: 466 GLIDDDDELFIVDRLKELIKYKGF--------------QVAPAELEALLIGHPDITDVAV 511

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V+      GE    F+  +  +  +++    +KQ V +++  +   + +     +PK  S
Sbjct: 512 VAMKEEAAGEVPVAFVVKSKDSELSED---DVKQFVSKQVVFYKRINKVFFTESIPKAPS 568

Query: 217 GKIMRRVLRKVAVNDRE 233
           GKI+R+ LR    N   
Sbjct: 569 GKILRKDLRAKLANGLG 585

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 83.3 bits (207), Expect = 2e-18
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 20/131 (15%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
           A  DE+GY+ +  R+ D++  SG        G + S+     ++E  L  HP V EAAVV
Sbjct: 420 AVWDEEGYVEIKDRLKDLI-KSG--------GEWISS----VDLENALMGHPKVKEAAVV 466

Query: 158 SRPHPVKGE--CLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
           + PHP   E       + P G     +EL + L   ++     + +PD    A  +P+T 
Sbjct: 467 AIPHPKWQERPLA--VVVPRGEKPTPEELNEHL---LKAGFAKWQLPDAYVFAEEIPRTS 521

Query: 216 SGKIMRRVLRK 226
           +GK ++R LR+
Sbjct: 522 AGKFLKRALRE 532

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 57.9 bits (141), Expect = 7e-10
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGP 198
           E+E  +     V  A V+        E L   I P       +  L   +K+++   + P
Sbjct: 412 EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASL-P 470

Query: 199 FAM-PDVIQHAPRLPKTRSGKIMRRVL 224
             M P    +   +  T +GKI R+ +
Sbjct: 471 AYMIPRKFIYQDHIQMTANGKIDRKRI 497

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 57.5 bits (140), Expect = 8e-10
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGP 198
           E+E  L +   V  A +V      K + L   + P   +   +  L   +K+++ E++  
Sbjct: 413 EIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPN 472

Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVL 224
           + +P    +   +P T +GK+ R+ L
Sbjct: 473 YMIPRKFMYQSSIPMTPNGKVDRKKL 498

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 140 EVEACLASHPDVSEAAVVSRP-HPVKGECLYCFITPAGGATFNQE----LVKQLKQQVRE 194
           +V   L   P V+ A  V R     K + L  +I    G     +    L K +K  V++
Sbjct: 417 DVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKD 476

Query: 195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVL 224
            +  + MP    +   LP T +GKI  + L
Sbjct: 477 HMMSYMMPSKFLYRDSLPLTPNGKIDIKTL 506

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
           EVE+ L  H  +SE AV       +   L  +             ++QL+Q   E++  +
Sbjct: 444 EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTY 498

Query: 200 AMPDVIQHAPRLPKTRSGKIMRRVL 224
            +P       ++P T +GKI R+ L
Sbjct: 499 MIPSYFIQLDKMPLTSNGKIDRKQL 523

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 30/133 (22%)

Query: 98  ARRDEDG---YLWVTGRVDDMLNVSGH---LMTVYFFGSYCSTAKVFTEVEACLASHPDV 151
           AR   DG   Y    GR+DD + + GH   L                 E+E  L  +P V
Sbjct: 846 ARWLPDGTIEYA---GRIDDQVKIRGHRIEL------E----------EIEKQLQEYPGV 886

Query: 152 SEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL 211
            +A VV+  H      +  ++      +      + +K  +++++  + +P        L
Sbjct: 887 KDAVVVADRHESGDASINAYLVNRTQLS-----AEDVKAHLKKQLPAYMVPQTFTFLDEL 941

Query: 212 PKTRSGKIMRRVL 224
           P T +GK+ +R+L
Sbjct: 942 PLTTNGKVNKRLL 954

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 140 EVEACLASHPDVSEAAVVSRPHP--VKGECLYCFITPAGGATF---------NQELVKQL 188
           EV   + S        V    +      + L  F+  +G A            +E+   L
Sbjct: 441 EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSL 500

Query: 189 KQQVREKIGPFAMPDVIQHAPRLP-KTRSGKIMRRVL 224
           +Q   + +  + +PD I     +P +  S K   + L
Sbjct: 501 RQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKAL 537

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 49.0 bits (118), Expect = 6e-07
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
            +E      P + + A++ R      + L C  T    A           Q +  ++  +
Sbjct: 433 ALEQRFRRQPGILDCALLVRERN-GVKQLLCAWTGKADA---------SPQALLRQLPTW 482

Query: 200 AMPDVIQHAPRLPKTRSGKIMRRVL 224
             P        LP T  GK+ R  L
Sbjct: 483 QRPHACVRVEALPLTAHGKLDRAAL 507

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 24/132 (18%)

Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLA-SHPDV--SEAAVVSR 159
           +  L+VTGR+ D++ + G         ++        ++E  L  S       + A    
Sbjct: 448 ENELYVTGRIKDLIIIYGK--------NHYPQ-----DIEFSLMHSPLHHVLGKCAAFVI 494

Query: 160 PHPVKGECLYCFI---TPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR--LPKT 214
                   L                  L  ++ + V E          I   P   +P T
Sbjct: 495 QEE-HEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQ--LEVHTIVLIPLKAMPHT 551

Query: 215 RSGKIMRRVLRK 226
            SGKI R   RK
Sbjct: 552 TSGKIRRNFCRK 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 6e-06
 Identities = 26/210 (12%), Positives = 62/210 (29%), Gaps = 57/210 (27%)

Query: 79  HGHNNFSFTTN-----NSDLL---LSSARRDEDGY--------LWVTGRVDDMLNVSGHL 122
           H H++  F T        D+L     +   + D          +     +D ++     +
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 123 MTVYF-FGSYC----STAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGG 177
                 F +         + F  VE  L    +                  Y F+     
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKF--VEEVLR--IN------------------YKFLMSPIK 99

Query: 178 ATFNQ-ELVKQLKQQVREKIGPFAMPDVIQ--HAPRLPKTRSGKIMRRVLRKVAVNDREV 234
               Q  ++ ++  + R+++  +    V    +  RL        +R+ L ++      +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLK---LRQALLELRPAKNVL 154

Query: 235 --GD----KSTLADEDVVDELFQNRPEGNV 258
             G     K+ +A +  +    Q + +  +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 29/132 (21%)

Query: 108 VTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAA--VVSRPHP-- 162
           +TGR DDML V G                VF +++E  + + P +S      +SR     
Sbjct: 330 ITGRSDDMLIVRG--------------VNVFPSQIEEIVVALPLLSGQFQITLSRDGHMD 375

Query: 163 ---VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSGK 218
              +  E L      +        L ++L+ +++  +G      V   A   +P T +GK
Sbjct: 376 RLDLAVE-LRSEAAASVTDGERAALARELQHRIKTMVG--VSSGVTVLAAGGIPATATGK 432

Query: 219 IMRRV--LRKVA 228
             RRV   R+ A
Sbjct: 433 -ARRVIDRRQAA 443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 32/131 (24%)

Query: 107 WVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEA--AVVSRPHP- 162
            + GR DDM  + G                +F  +VE  L   P++       +   +  
Sbjct: 325 RIKGRSDDMFIIKG--------------VNIFPMQVEKILVQFPELGSNYLITLETVNNQ 370

Query: 163 ----VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSG 217
               V+ E               +++ + + +Q++++I     P V       LP++  G
Sbjct: 371 DEMIVEVELSDLS---TDNYIELEKIRRDIIRQLKDEIL--VTPKVKLVKKGSLPQS-EG 424

Query: 218 KIMRRV--LRK 226
           K   RV  LR 
Sbjct: 425 K-AVRVKDLRD 434

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.98
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	99.98
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.97
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.97
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.97
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.97
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.97
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	99.97
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.97
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.97
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.97
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.97
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.96
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.96
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	99.96
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	99.96
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.96
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.96
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	99.96
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.96
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	99.96
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	99.95
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.95
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.94
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.93
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.87
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.86
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.83
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.57
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.53
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.23
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	95.12
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	95.09
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	94.31
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	89.8

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.2e-32  Score=260.27  Aligned_cols=171  Identities=22%  Similarity=0.350  Sum_probs=156.0

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++++..++.+..|+..+.|+..+.  ||+++++.++..|.        .+|||+|||+|++|+||+|+|+||.||
T Consensus       331 ~~i~d~~~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~--------~~g~~~TGDl~~~~~dG~l~~~GR~dd  400 (503)
T 4fuq_A          331 ARVTDPETGKELPRGDIGMIEVKGPNVFK--GYWRMPEKTKSEFR--------DDGFFITGDLGKIDERGYVHILGRGKD  400 (503)
T ss_dssp             EEEECTTTCCBCCTTCCEEEEEESTTSCC--CBTTCHHHHHHTBC--------TTSCEEEEEEEEECTTCEEEECCSSTT
T ss_pred             EEEEECCCCCCCcCCCceEEEEECCchhh--hhcCChhhhHhhhC--------CCCCeEcceeEEEcCCCcEEEEecCCC
Confidence            46777788888888888888888877777  99999999999885        478999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|++|         +|.    |||+.|.+||+|.+++|++.+++..++.++++++..++...+.   +++++++++
T Consensus       401 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~~l~~  464 (503)
T 4fuq_A          401 LVITGGFNV---------YPK----EIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDE---AQVLHGLDG  464 (503)
T ss_dssp             CEEETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHBT
T ss_pred             EEEECCEEE---------CHH----HHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCH---HHHHHHHHh
Confidence            999999999         999    9999999999999999999999888899999999987766654   689999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      +|+.|++|..+++++++|+|++||++|++|++++.+.
T Consensus       465 ~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  501 (503)
T 4fuq_A          465 QLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI  501 (503)
T ss_dssp             TBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred             hcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence            9999999999999999999999999999999998654

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3.3e-32  Score=265.25  Aligned_cols=199  Identities=42%  Similarity=0.673  Sum_probs=159.0

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.++ +|..++.+..|+..+.|..+....||+++++.+...|..      ..+|||+|||+|++|+||+|+|+||.||+
T Consensus       447 ~i~d~-~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~------~~~g~y~TGDlg~~d~dG~l~i~GR~dd~  519 (652)
T 1pg4_A          447 ALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS------TFKNMYFSGDGARRDEDGYYWITGRVDDV  519 (652)
T ss_dssp             EEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS------SSTTSEEEEEEEEECTTSCEEEEEESSSE
T ss_pred             EEECC-CCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhh------cCCCEEECCcEEEEcCCCcEEEEecCCCE
Confidence            44443 355555544444444442112225999999988666531      24689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      ||++|++|         +|.    |||++|.+||+|.+|+|++.+++..++.++++|++.++...++++.++|+++|+++
T Consensus       520 Ik~~G~rI---------~~~----eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~  586 (652)
T 1pg4_A          520 LNVSGHRL---------GTA----EIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKE  586 (652)
T ss_dssp             EEETTEEE---------EHH----HHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred             EEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHh
Confidence            99999999         999    99999999999999999999998888999999999877666666778999999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc-ccCCCCCCCchHHHHHHHHHcc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQNRP  254 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~  254 (258)
                      |+++++|..++++++||+|++|||+|+.|++++.++. ..++.++..+++.++++.+.+.
T Consensus       587 l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~  646 (652)
T 1pg4_A          587 IGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQ  646 (652)
T ss_dssp             TCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTHHHHHHHHHH
T ss_pred             CCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999998762 3688899999999998876654

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.8e-32  Score=259.49  Aligned_cols=169  Identities=22%  Similarity=0.365  Sum_probs=151.7

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++++..++.+..|+..+.|...+.  ||+++++.++..|.        .+|||+|||+|++|+||+|+|+||.||
T Consensus       366 ~~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~p~~t~~~~~--------~~g~~~TGDl~~~~~dG~l~~~GR~dd  435 (536)
T 3ni2_A          366 MKIVDPETGASLPRNQPGEICIRGDQIMK--GYLNDPEATSRTID--------KEGWLHTGDIGYIDDDDELFIVDRLKE  435 (536)
T ss_dssp             EEEECTTTCCBCCTTCCEEEEEESTTSCS--EETTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEECSC
T ss_pred             EEEEeCCCCcCCCCCCccEEEEeCcccch--hhcCChhHHHhhcc--------CCCceEcccEEEEcCCceEEEEecccc
Confidence            35667777888888888887777777777  99999999999884        479999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|++|         +|.    +||+.|.+||+|.+|+|++.+++..++.++++++..++...+.   +++++++++
T Consensus       436 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~  499 (536)
T 3ni2_A          436 LIKYKGFQV---------APA----ELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATE---DEIKQYISK  499 (536)
T ss_dssp             CEEETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHT
T ss_pred             eEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCH---HHHHHHHHH
Confidence            999999999         999    9999999999999999999999888899999999887665554   689999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHh
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAV  229 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~  229 (258)
                      +++.+++|..+++++++|+|++|||+|++|++++.
T Consensus       500 ~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~  534 (536)
T 3ni2_A          500 QVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA  534 (536)
T ss_dssp             TSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred             hccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence            99999999999999999999999999999998764

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.98  E-value=8.4e-33  Score=265.09  Aligned_cols=198  Identities=19%  Similarity=0.226  Sum_probs=146.4

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+ +++..++.+..|+..+.|+.++.  ||+++++.|+..|...+ + ...++||+|||+|++|+||+|+|+||.||+
T Consensus       358 ~i~d-~~~~~~~~g~~GEl~v~g~~v~~--GY~~~pe~t~~~f~~~~-~-~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~  432 (563)
T 1amu_A          358 YIVD-ENLQLKSVGEAGELCIGGEGLAR--GYWKRPELTSQKFVDNP-F-VPGEKLYKTGDQARWLSDGNIEYLGRIDNQ  432 (563)
T ss_dssp             EEEC-TTSCBCCTTCEEEEEEEETTCCC--EETTCHHHHHHHEEECS-S-STTSEEEEEEEEEEECTTSCEEEEEEGGGE
T ss_pred             EEEC-CCcCCCCCCCcEEEEEechhhCh--hhCCCchhhhhhcccCC-C-CCCCEEEecCCEEEEcCCCeEEEeccccCE
Confidence            4444 34566666777777777777666  99999999999996432 1 134679999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      ||++|++|         +|.    +||+.|.+||+|.+|+|++.++...++.++++++....  .+   .++|+++++++
T Consensus       433 Ik~~G~~V---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~--~~---~~~l~~~l~~~  494 (563)
T 1amu_A          433 VKIRGHRV---------ELE----EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IP---LEQLRQFSSEE  494 (563)
T ss_dssp             EEETTEEE---------EHH----HHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--CC---HHHHHHHHHHH
T ss_pred             EEECCEEe---------CHH----HHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC--CC---HHHHHHHHHhh
Confidence            99999999         999    99999999999999999999988888889999987643  23   26899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc--cCCCCCCCchHHHHHHHHHccCC
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE--VGDKSTLADEDVVDELFQNRPEG  256 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~  256 (258)
                      |+.|++|..+++++++|+|++|||+|++|++.......  ....|.++.|+.+.+||++++..
T Consensus       495 L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~~L~~  557 (563)
T 1amu_A          495 LPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLVTIWQDVLGS  557 (563)
T ss_dssp             SCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC---------------------------
T ss_pred             CchhhCCcEEEEecccCCCCCcChhHHhcCCcccccccccccCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999876543211  23567888999999999998864

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=99.98  E-value=4.9e-32  Score=260.76  Aligned_cols=172  Identities=28%  Similarity=0.438  Sum_probs=132.4

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEe---ecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVG---RRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV  112 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G---~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~  112 (258)
                      .|.++ +|..++.+..|+..+.|   +.+....||+++++.++..|.         +|||+|||+|++|+||+|+|+||.
T Consensus       405 ~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---------~gwy~TGDlg~~d~dG~l~~~GR~  474 (580)
T 3etc_A          405 ELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---------DGYYHTGDMAWMDEDGYLWFVGRA  474 (580)
T ss_dssp             EEECT-TSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---------TTEEEEEEEEEECTTSCEEEEEES
T ss_pred             EEECC-CCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---------CCEEecCcEEEECCCCcEEEEecC
Confidence            45554 36677777767666654   112222499999999999995         689999999999999999999999


Q ss_pred             CCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHH
Q psy12528        113 DDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV  192 (258)
Q Consensus       113 ~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l  192 (258)
                      ||+||++|++|         +|.    |||++|.+||+|.+|+|++.+++..++.+.++|++.++....+.+.++|++++
T Consensus       475 dd~Ik~~G~~I---------~p~----eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l  541 (580)
T 3etc_A          475 DDIIKTSGYKV---------GPF----EVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHV  541 (580)
T ss_dssp             SSCEEETTEEE---------CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CCEEEECCEEE---------CHH----HHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            99999999999         999    99999999999999999999999889999999999888766777778999999


Q ss_pred             HHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528        193 REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN  230 (258)
Q Consensus       193 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~  230 (258)
                      +++++++++|+.++++++||+|++|||+|++|++++.+
T Consensus       542 ~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          542 KNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             HHHSCGGGCCSEEEEECC--------------------
T ss_pred             HhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence            99999999999999999999999999999999998764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=99.97  E-value=4.8e-31  Score=249.05  Aligned_cols=159  Identities=22%  Similarity=0.312  Sum_probs=138.2

Q ss_pred             CcCCCCCCCCCeEE-eecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         44 DDLNLTLSMNPTLV-GRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        44 ~~~~~~~~~~~~~~-G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      ..++.+..|+..+. |...+  .||+++++.++..|.         +|||+|||+|++|+||+|+|+||.||+||++|++
T Consensus       343 ~~~~~g~~GEl~v~gg~~~~--~GY~~~~~~t~~~f~---------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~  411 (504)
T 1t5h_X          343 EIVANGEEGELIVAASDSAF--VGYLNQPQATAEKLQ---------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN  411 (504)
T ss_dssp             CBCCTTCCEEEEEECCTTSC--CCBTTCHHHHHHHEE---------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEE
T ss_pred             CcCCCCCcceEEEeCCceee--ceecCCchhhhhhhc---------CCccccCcEEEECCCceEEEeCcccCEEEECCEE
Confidence            33444444444444 33444  499999999999884         6899999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH-hcCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE-KIGPFAM  201 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~  201 (258)
                      |         +|.    +||+.|.+||+|.+|+|++.+++..++.++++|++..+...+.   +++++++++ +|+.|++
T Consensus       412 v---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~~~~~~L~~~~~  475 (504)
T 1t5h_X          412 I---------HPS----EIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA---DALDTFCRSSELADFKR  475 (504)
T ss_dssp             E---------CHH----HHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCH---HHHHHHHHTSSCCGGGS
T ss_pred             E---------CHH----HHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCH---HHHHHHHhhccCccccc
Confidence            9         999    9999999999999999999999888899999999887655543   688999998 8999999


Q ss_pred             CcEEEECCCCCCCCCCcccHHHHHHHHh
Q psy12528        202 PDVIQHAPRLPKTRSGKIMRRVLRKVAV  229 (258)
Q Consensus       202 p~~~~~~~~lP~t~~GKi~r~~l~~~~~  229 (258)
                      |+.+++++++|+|++|||+|++|++++.
T Consensus       476 P~~i~~v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          476 PKRYFILDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             CSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             ceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence            9999999999999999999999999874

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=99.97  E-value=1.7e-31  Score=260.89  Aligned_cols=198  Identities=34%  Similarity=0.547  Sum_probs=149.8

Q ss_pred             EEEeCCCCCcCCC-CCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         36 SILEPRLGDDLNL-TLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        36 ~i~~~~~g~~~~~-~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      .|.++++|..++. +..|+..+.|..+....||+++++.+...|..      ..+|||+|||+|++|+||+|+|+||.||
T Consensus       454 ~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~------~~~g~y~TGDlg~~d~dG~l~i~GR~dd  527 (663)
T 1ry2_A          454 VVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN------PYPGYYFTGDGAAKDKDGYIWILGRVDD  527 (663)
T ss_dssp             EEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS------SSTTSEEEEEEEEECTTCCEEECSCTTS
T ss_pred             EEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhc------CCCCEEEcCCEEEEcCCCCEEEEeecCC
Confidence            4555434555544 44444444342112235999999988776632      2478999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC---c-cH---HHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT---F-NQ---ELVKQ  187 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~---~-~~---~~~~~  187 (258)
                      +||++|++|         +|.    |||++|.+||.|.+|+|++.+++..++.++++|++.++..   . ++   ++.++
T Consensus       528 ~Ik~~G~rI---------~~~----eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~  594 (663)
T 1ry2_A          528 VVNVSGHRL---------STA----EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKH  594 (663)
T ss_dssp             CBCSSSCCB---------CHH----HHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHH
T ss_pred             EEEECCEEc---------CHH----HHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHH
Confidence            999999999         999    9999999999999999999998888889999999876543   2 22   35678


Q ss_pred             HHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc-ccCCCCCCCchHHHHHHHHH
Q psy12528        188 LKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQN  252 (258)
Q Consensus       188 l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~  252 (258)
                      |+++++++++++++|..++++++||+|++|||+|+.|++++.++. ..++.++..+++.++++.+.
T Consensus       595 l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~~  660 (663)
T 1ry2_A          595 LVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDS  660 (663)
T ss_dssp             HHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHHHHHHHT
T ss_pred             HHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987752 36889999999999998663

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=99.97  E-value=4.4e-31  Score=252.17  Aligned_cols=171  Identities=19%  Similarity=0.300  Sum_probs=150.2

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++++..++.+..|+..+.|...+.  ||+++++.++..|.        .+|||+|||+|++|+||+|+|+||.||
T Consensus       373 ~~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~--------~~g~~~TGDl~~~~~dG~l~~~GR~~d  442 (548)
T 2d1s_A          373 AKVIDLDTKKSLGPNRRGEVCVKGPMLMK--GYVNNPEATKELID--------EEGWLHTGDIGYYDEEKHFFIVDRLKS  442 (548)
T ss_dssp             EEEECTTTCCBCCTTCCEEEEEESTTSCS--EETTCHHHHHHHBC--------TTSCEEEEEEEEECTTCCEEEEEEGGG
T ss_pred             EEEEeCCcCccCCCCCCeEEEECCHHHhh--hhcCChHHhhhccc--------CCcEEEccCEEEEcCCCeEEEeccccc
Confidence            34555566677777777776666666666  99999999999884        478999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|++|         +|.    +||++|.+||+|.+|+|++.+++..++.++++|++.++...+.   +++++++++
T Consensus       443 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~~~~  506 (548)
T 2d1s_A          443 LIKYKGYQV---------PPA----ELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTE---KEVMDYVAS  506 (548)
T ss_dssp             CBCBTTCCB---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHT
T ss_pred             eEEECCEEE---------CHH----HHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCH---HHHHHHHHH
Confidence            999999999         999    9999999999999999999999888889999999877654443   689999999


Q ss_pred             hcCCCCCCc-EEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        195 KIGPFAMPD-VIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 ~l~~~~~p~-~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      +|+.+++|. .+++++++|+|++||++|++|++++.+.
T Consensus       507 ~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  544 (548)
T 2d1s_A          507 QVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP  544 (548)
T ss_dssp             TSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred             hccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence            999999999 9999999999999999999999998654

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=99.97  E-value=6.9e-32  Score=257.49  Aligned_cols=176  Identities=23%  Similarity=0.346  Sum_probs=112.9

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++++..++.+..|+..+.|+.++.  ||+++++.++..|....    .+.+||+|||+|++|+||+|+|+||.||
T Consensus       367 ~~i~d~~~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~~----~g~~~~~TGDl~~~~~dG~l~~~GR~dd  440 (549)
T 3g7s_A          367 LKVISLEDGRELGVGESGEIVIRGPNIFK--GYWKREKENQECWWYDE----KGRKFFRTGDVGFIDEEGFLHFQDRVKE  440 (549)
T ss_dssp             EEEECSSSCCEECTTCCEEEEEESTTSCS--EETTCTTGGGTSEEECT----TCCEEEEEEEEEEECTTSCEEEEEEC--
T ss_pred             EEEEeCCCCcCCCCCCceEEEEECcchhh--hhCCChhhhhhhhhccC----CCCceEccCcEEEEcCCceEEEeccccc
Confidence            45667677888888888887777777776  99999999998884111    1234999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCC--CCccHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGG--ATFNQELVKQLKQQV  192 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~l  192 (258)
                      +||++|++|         +|.    |||++|.+||+|.+|+|++.+++..++.+++++++.++  ...+.   +++++++
T Consensus       441 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~---~~l~~~l  504 (549)
T 3g7s_A          441 VIKYKGYTI---------APF----ELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDE---EDIIEWV  504 (549)
T ss_dssp             -------------------CH----HHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCH---HHHHHHH
T ss_pred             eEEECCEEE---------CHH----HHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCH---HHHHHHH
Confidence            999999999         999    99999999999999999999988888899999998765  33333   6899999


Q ss_pred             HHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        193 REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       193 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      +++|+.|++|..++++++||+|++|||+|++|++.+....
T Consensus       505 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~  544 (549)
T 3g7s_A          505 RERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGH  544 (549)
T ss_dssp             HTTCC-----CCCCEEEECC--------------------
T ss_pred             HHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccc
Confidence            9999999999999999999999999999999999887664

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=99.97  E-value=1e-30  Score=252.91  Aligned_cols=192  Identities=23%  Similarity=0.307  Sum_probs=165.7

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+ .++..++.+..|+..+.|..++.  ||+++++.|+..|.        .++||+|||+|++++||.|+++||.||
T Consensus       367 ~~i~d-~~~~~~p~G~~GEl~i~G~~v~~--GY~~~p~~t~~~f~--------~~~~yrTGDl~~~~~dG~l~~~GR~dd  435 (617)
T 3rg2_A          367 VWVAD-AEGNPLPQGEVGRLMTRGPYTFR--GYYKSPQHNASAFD--------ANGFYCSGDLISIDPEGYITVQGREKD  435 (617)
T ss_dssp             EEEEC-TTSCBCCTTCCEEEEEECSSSCS--CCTTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred             EEEEC-CCCCCCCCCCceEEEecCccccc--hhcCChhhhhhccC--------CCCceecCceEEEcCCceEEEEeecCC
Confidence            34444 45677888887777777777766  99999999999995        478999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|++|         +|.    |||+.|.+||+|.+|+|++.++...++.++++++..+..  +.   .++++++++
T Consensus       436 ~iki~G~ri---------~~~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~--~~---~~l~~~l~~  497 (617)
T 3rg2_A          436 QINRGGEKI---------AAE----EIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL--RA---VQVRRFLRE  497 (617)
T ss_dssp             EEEETTEEE---------EHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC--CH---HHHHHHHHT
T ss_pred             EEEECCEEe---------CHH----HHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC--CH---HHHHHHHHh
Confidence            999999999         999    999999999999999999999888888999999887632  22   578899998


Q ss_pred             -hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccC
Q psy12528        195 -KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       195 -~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                       .++.|++|..+++++++|+|++||++|++|++++.+.......+....++.++++|+.++.
T Consensus       498 ~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  559 (617)
T 3rg2_A          498 QGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALREVILPLLD  559 (617)
T ss_dssp             TTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHHSSSCCCCSHHHHHHHHGGGSC
T ss_pred             CCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcccccccccccccHHHHHHHHHHHhc
Confidence             6999999999999999999999999999999998776544455556678899999998874

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=99.97  E-value=2.7e-30  Score=244.25  Aligned_cols=177  Identities=17%  Similarity=0.217  Sum_probs=152.4

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.++ +|..++.++.|+..+.|+..+.  ||+++++.++..|...     .+..||+|||+|++ +||+|+++||.||
T Consensus       329 ~~i~d~-~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~-----~g~~~~~TGDlg~~-~dG~l~~~GR~~d  399 (511)
T 3e7w_A          329 IFIMDE-EGQPLPEGEKGEIVIAGPSVSR--GYLGEPELTEKAFFSH-----EGQWAYRTGDAGFI-QDGQIFCQGRLDF  399 (511)
T ss_dssp             EEEECT-TSCBCCTTCCEEEEEESTTSCC--CBTTCHHHHHHHEEES-----SSSEEEEEEEEEEE-ETTEEEEEEESSS
T ss_pred             EEEECC-CCCCCCCCCceEEEEecCccCh--hhCCCcccchhhhcCC-----CCCEEEeCCCeEEc-cCCeEEEEccccC
Confidence            345554 4777888887887777777776  9999999999988532     12347999999999 5999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc-HHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVR  193 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~l~  193 (258)
                      +||++|++|         +|.    +||+.|.+||+|.+|+|++.++...++.+++++++.++.... .++.+.++++++
T Consensus       400 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~  466 (511)
T 3e7w_A          400 QIKLHGYRM---------ELE----EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELA  466 (511)
T ss_dssp             EEEETTEEE---------EHH----HHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred             EEEECCEEe---------CHH----HHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHH
Confidence            999999999         999    999999999999999999998887888999999988765433 345678999999


Q ss_pred             HhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528        194 EKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE  233 (258)
Q Consensus       194 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~  233 (258)
                      ++|+.+++|..+++++++|+|++|||+|++|++.+.++..
T Consensus       467 ~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~  506 (511)
T 3e7w_A          467 ASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH  506 (511)
T ss_dssp             HHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred             hhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence            9999999999999999999999999999999999988764

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=99.97  E-value=2.9e-31  Score=257.47  Aligned_cols=184  Identities=16%  Similarity=0.162  Sum_probs=127.9

Q ss_pred             CCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEe
Q psy12528         46 LNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTV  125 (258)
Q Consensus        46 ~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~  125 (258)
                      ++.+..|+..+.|..++.  ||+++++.|+..|...+ +.....+||+|||+|++|+||+|+|+||.||+||++|++|  
T Consensus       355 ~~~g~~GEl~i~G~~v~~--GY~~~p~~t~~~f~~~p-~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri--  429 (620)
T 4dg8_A          355 AEPDRAGEIVAFGAGLAQ--GYRNDAARTRASFVELP-YRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRL--  429 (620)
T ss_dssp             CSSSCCEEEEEEETTCCS--EETTCHHHHHHHEEEEE-ETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEE--
T ss_pred             CCCCCceEEEEecccccc--ccCCChhhhhhhhccCC-CCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEc--
Confidence            566666777777766666  99999999999997543 2111127999999999999999999999999999999999  


Q ss_pred             eecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEE
Q psy12528        126 YFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVI  205 (258)
Q Consensus       126 ~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~  205 (258)
                             +|.    |||+.|.+||+|.+|+|++.++...+.. +++++....         .+.+.+.++|+.|++|..+
T Consensus       430 -------~~~----eIE~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~~~~---------~~~~~l~~~Lp~y~~P~~~  488 (620)
T 4dg8_A          430 -------DLP----ALEQRFRRQPGILDCALLVRERNGVKQL-LCAWTGKAD---------ASPQALLRQLPTWQRPHAC  488 (620)
T ss_dssp             -------EHH----HHHHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEECTT---------CCCHHHHHHSCGGGSCSEE
T ss_pred             -------CHH----HHHHHHHhCCCccEEEEEEEeCCCceEE-EEEEecChH---------HHHHHHHHhChhhcCCcEE
Confidence                   999    9999999999999999999887754444 444443321         2344567789999999999


Q ss_pred             EECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccC
Q psy12528        206 QHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       206 ~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      ++++++|+|++||++|++|++.+.+.......+.++.|..+.++|++++.
T Consensus       489 ~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~e~~l~~iw~~vL~  538 (620)
T 4dg8_A          489 VRVEALPLTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQLWSELLG  538 (620)
T ss_dssp             EECSSCCCC----CCHHHHHHHTCSCC-----------------------
T ss_pred             EEECcCCCCcccCHhHHHHhhccccccccccCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999988766544456667788899999999875

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=99.97  E-value=1.3e-30  Score=247.19  Aligned_cols=152  Identities=22%  Similarity=0.363  Sum_probs=134.1

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSY  131 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~  131 (258)
                      |+..+.|...+  .||+++++.++..|.         +|||+|||+|++|+||+|+|+||.||+||++|++|        
T Consensus       363 GEl~v~g~~v~--~GY~~~p~~t~~~f~---------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v--------  423 (517)
T 3r44_A          363 GEVVIKSDILL--KEYWNRPEATRDAFD---------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV--------  423 (517)
T ss_dssp             EEEEEEETTSC--SEETTCHHHHHHTEE---------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEE--------
T ss_pred             eEEEEeCcchh--hhhCCChhhhHhhhc---------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEE--------
Confidence            44444444444  499999999999985         68999999999999999999999999999999999        


Q ss_pred             cCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q psy12528        132 CSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL  211 (258)
Q Consensus       132 ~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~l  211 (258)
                       +|.    |||+.|.+||+|.+|+|++.+++..++.+++++ ..++...+.   ++++++++++|+.|++|..+++++++
T Consensus       424 -~p~----eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~---~~l~~~l~~~L~~~~~P~~i~~v~~l  494 (517)
T 3r44_A          424 -YPA----EIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSE---QQIVEYCGTRLARYKLPKKVIFAEAI  494 (517)
T ss_dssp             -CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCH---HHHHHHHHHHSCGGGSCSEEEECSCC
T ss_pred             -CHH----HHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCH---HHHHHHHHHhCCCCCCCCEEEEECCC
Confidence             999    999999999999999999999988888888888 444444443   68999999999999999999999999


Q ss_pred             CCCCCCcccHHHHHHHHhcc
Q psy12528        212 PKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       212 P~t~~GKi~r~~l~~~~~~~  231 (258)
                      |+|++|||+|++|++++.+.
T Consensus       495 P~t~~GKi~R~~L~~~~~~~  514 (517)
T 3r44_A          495 PRNPTGKILKTVLREQYSAT  514 (517)
T ss_dssp             CBCTTCCBCHHHHHHHHGGG
T ss_pred             CCCCCcCccHHHHHHHHHhh
Confidence            99999999999999998765

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=99.97  E-value=2.4e-30  Score=248.37  Aligned_cols=165  Identities=32%  Similarity=0.460  Sum_probs=142.8

Q ss_pred             CCcCCCCCCCCCeEE-----eecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeE
Q psy12528         43 GDDLNLTLSMNPTLV-----GRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLN  117 (258)
Q Consensus        43 g~~~~~~~~~~~~~~-----G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~  117 (258)
                      +..++.+..|+..+.     |...+.  ||+++++.++..|.         ++||+|||++++|+||+|+|+||.||+||
T Consensus       392 g~~~~~G~~GEl~v~~~~~~g~~v~~--GY~~~~~~t~~~f~---------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik  460 (570)
T 3c5e_A          392 GNVLPPGTEGDIGIRVKPIRPIGIFS--GYVDNPDKTAANIR---------GDFWLLGDRGIKDEDGYFQFMGRADDIIN  460 (570)
T ss_dssp             SCBCCTTCCEEEEEECSSBCCTTCCC--EETTCHHHHHHTEE---------TTEEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred             CCCCCCCCCCeeEEeccCCCCchhhc--cccCChhHhhhhhc---------CCccccceeEEEcCCceEEEEecCCCEEE
Confidence            555665655655555     444444  99999999999885         68999999999999999999999999999


Q ss_pred             ECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC--CccHHHHHHHHHHHHHh
Q psy12528        118 VSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA--TFNQELVKQLKQQVREK  195 (258)
Q Consensus       118 ~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~l~~~  195 (258)
                      ++|++|         +|.    +||+.|.+||+|.+|+|++.+++..++.++++|++.++.  ...+.+.++|+++++++
T Consensus       461 ~~G~~V---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~  527 (570)
T 3c5e_A          461 SSGYRI---------GPS----EVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSV  527 (570)
T ss_dssp             ETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             ECCEEE---------CHH----HHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhh
Confidence            999999         999    999999999999999999999888888999999987653  23344567899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      |+.|++|..+++++++|+|++||++|++|++.+...
T Consensus       528 L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  563 (570)
T 3c5e_A          528 TAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM  563 (570)
T ss_dssp             SCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred             CccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence            999999999999999999999999999999987544

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=99.97  E-value=2e-30  Score=245.02  Aligned_cols=172  Identities=17%  Similarity=0.218  Sum_probs=148.6

Q ss_pred             CCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECc
Q psy12528         41 RLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSG  120 (258)
Q Consensus        41 ~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G  120 (258)
                      ++|..++.+..|+..+.|+..+.  ||+++++.++..|..     .+.++||+|||+|++ +||+|+|+||.||+||++|
T Consensus       335 ~~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~-----~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G  406 (512)
T 3fce_A          335 EDGTIAPDGEKGEIVIVGPSVSV--GYLGSPELTEKAFTM-----IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHG  406 (512)
T ss_dssp             SSSCBCCTTSCEEEEEESTTSCS--CBTTCHHHHHHHEEE-----ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETT
T ss_pred             CCCCCCCCCCeEEEEEeccccCh--hhcCCchhhhhcccc-----CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECC
Confidence            45677777777777777776666  999999999998852     134689999999999 7999999999999999999


Q ss_pred             EEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc-HHHHHHHHHHHHHhcCCC
Q psy12528        121 HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPF  199 (258)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~l~~~l~~~  199 (258)
                      ++|         +|.    +||+.|.+||+|.+|+|++.++...++.+++++++.+..... ..+.++++++++++|+.+
T Consensus       407 ~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~  473 (512)
T 3fce_A          407 YRM---------ELE----EIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNY  473 (512)
T ss_dssp             EEE---------CHH----HHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGG
T ss_pred             EEE---------CHH----HHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchh
Confidence            999         999    999999999999999999999888788899999987654333 345678999999999999


Q ss_pred             CCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528        200 AMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE  233 (258)
Q Consensus       200 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~  233 (258)
                      ++|..+++++++|+|++|||+|++|++.+.++.+
T Consensus       474 ~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~  507 (512)
T 3fce_A          474 MIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH  507 (512)
T ss_dssp             GSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred             cCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence            9999999999999999999999999999988763

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=99.97  E-value=2e-30  Score=247.07  Aligned_cols=169  Identities=25%  Similarity=0.397  Sum_probs=147.2

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+ +++..++.+..|+..+.|+.++.  ||+++++.++..|.        .+|||+|||+|++|+||+|+|+||.||
T Consensus       363 ~~i~d-~~~~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~--------~~g~~~TGDlg~~~~dG~l~~~GR~dd  431 (539)
T 1mdb_A          363 SRVWD-DHDRDVKPGETGHLLTRGPYTIR--GYYKAEEHNAASFT--------EDGFYRTGDIVRLTRDGYIVVEGRAKD  431 (539)
T ss_dssp             EEEEC-TTSCBCCTTCCEEEEEECTTSCS--SCTTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEEGGG
T ss_pred             EEEEC-CCCCCCcCCCcceEEeeCcccch--hhcCChhhhhhhcc--------CCCCeecCceEEECCCCcEEEeccccc
Confidence            34444 34666777777777777776666  99999999999885        478999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|++|         +|.    +||+.|.+||+|.+|+|++.+++..++.+++++++... ..+.   +++++++++
T Consensus       432 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-~~~~---~~l~~~l~~  494 (539)
T 1mdb_A          432 QINRGGEKV---------AAE----EVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKA---AELKAFLRE  494 (539)
T ss_dssp             CEECSSCEE---------CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCH---HHHHHHHHH
T ss_pred             eEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC-CCCH---HHHHHHHHh
Confidence            999999999         999    99999999999999999999998888899999988743 2332   689999999


Q ss_pred             h-cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        195 K-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 ~-l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      + |+.|++|..+++++++|+|++||++|++|++++.+.
T Consensus       495 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  532 (539)
T 1mdb_A          495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK  532 (539)
T ss_dssp             TTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred             CCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence            8 999999999999999999999999999999988654

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=99.97  E-value=3.3e-30  Score=243.78  Aligned_cols=151  Identities=28%  Similarity=0.461  Sum_probs=120.0

Q ss_pred             CCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC-CCeeEECcEEEEeeec
Q psy12528         50 LSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV-DDMLNVSGHLMTVYFF  128 (258)
Q Consensus        50 ~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~-~d~i~~~G~~v~~~~~  128 (258)
                      ..|+..+.|...+  .||+++++.++..|.        .++||+|||+|++|+||+|+|+||. |++||++|++|     
T Consensus       352 ~~GEl~v~g~~v~--~GY~~~~~~t~~~f~--------~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v-----  416 (505)
T 3nyq_A          352 SVGEIQVRGPNLF--TEYLNRPDATAAAFT--------EDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI-----  416 (505)
T ss_dssp             CCEEEEEESTTSC--CEETTCHHHHHHTBC--------TTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEE-----
T ss_pred             ceEEEEEecCchh--hhhCCChhHhhhhhc--------CCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEE-----
Confidence            3344444444444  499999999999885        4789999999999999999999997 59999999999     


Q ss_pred             ccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCC-CCccHHHHHHHHHHHHHhcCCCCCCcEEEE
Q psy12528        129 GSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGG-ATFNQELVKQLKQQVREKIGPFAMPDVIQH  207 (258)
Q Consensus       129 ~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~  207 (258)
                          +|.    |||+.|.+||+|.+|+|++.+++..++.+++++++.+. ...+   .++|+++++++|+.+++|..+++
T Consensus       417 ----~~~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~  485 (505)
T 3nyq_A          417 ----GAG----EIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPA---LGTLADHVAARLAPHKRPRVVRY  485 (505)
T ss_dssp             ----CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCC---HHHHHHHHHHHTCGGGSCSEEEE
T ss_pred             ----CHH----HHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCC---HHHHHHHHHhhCCCCcCccEEEE
Confidence                999    99999999999999999999998888999999998753 2333   36899999999999999999999


Q ss_pred             CCCCCCCCCCcccHHHHHH
Q psy12528        208 APRLPKTRSGKIMRRVLRK  226 (258)
Q Consensus       208 ~~~lP~t~~GKi~r~~l~~  226 (258)
                      +++||+|++|||+|++|++
T Consensus       486 v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          486 LDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             CSCCCC-------------
T ss_pred             ECCCCCCCCcCeeHHhhcc
Confidence            9999999999999999976

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=99.97  E-value=2.3e-30  Score=244.94  Aligned_cols=172  Identities=23%  Similarity=0.255  Sum_probs=138.3

Q ss_pred             CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528         42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~  121 (258)
                      +|.+++.+..|+..+.|+..+.  ||+++++.++..|...     +.++||+|||+|++|+||+|+|+||.||+||++|+
T Consensus       339 ~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~-----~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~  411 (521)
T 3l8c_A          339 DGKELSSGEQGEIIVTGPAVSK--GYLNNPEKTAEAFFTF-----KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGY  411 (521)
T ss_dssp             TSCBCCTTCCEEEEEESTTSCS--CBTTCHHHHHHHEEEE-----TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC----
T ss_pred             CcCCCCCCCceEEEecccccCh--hhcCCchHhhccCcCC-----CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCE
Confidence            4677777777777777776666  9999999999988521     34689999999999999999999999999999999


Q ss_pred             EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCC-CCcEEEEEEEeCCCCCc----cHHHHHHHHHHHHHhc
Q psy12528        122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPV-KGECLYCFITPAGGATF----NQELVKQLKQQVREKI  196 (258)
Q Consensus       122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~-~~~~~~~~v~~~~~~~~----~~~~~~~l~~~l~~~l  196 (258)
                      +|         +|.    +||+.|.+||+|.+|+|++.++.. .++.+++++++.++...    ...+.++++++++++|
T Consensus       412 ~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l  478 (521)
T 3l8c_A          412 RI---------ELE----DVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHM  478 (521)
T ss_dssp             -C---------BHH----HHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGS
T ss_pred             Ee---------CHH----HHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhC
Confidence            99         999    999999999999999999887544 35788899998876422    1234678999999999


Q ss_pred             CCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528        197 GPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE  233 (258)
Q Consensus       197 ~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~  233 (258)
                      +.+++|..++++++||+|++|||+|++|++.+.++.+
T Consensus       479 ~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~  515 (521)
T 3l8c_A          479 MSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG  515 (521)
T ss_dssp             CGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred             ccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence            9999999999999999999999999999999877754

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=99.96  E-value=4.7e-30  Score=266.81  Aligned_cols=191  Identities=18%  Similarity=0.264  Sum_probs=161.7

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      +..++.+..|+..+.|..++.  ||+|+++.|+..|..++ + ..+++||+|||+|++++||.|+|+||.|++||++|++
T Consensus       795 ~~~~p~G~~GEl~i~G~~v~~--GY~~~p~~T~~~f~~~p-~-~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~r  870 (1304)
T 2vsq_A          795 SQLQPFGAVGELCISGMGVSK--GYVNRADLTKEKFIENP-F-KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHR  870 (1304)
T ss_dssp             SCBCCTTCCEEEEEEETTCCC--CBTTCHHHHHHHEEECT-T-STTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEE
T ss_pred             cCCCCCCCceEEEEeccccCc--cccCCcccchhhhccCC-C-CCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEe
Confidence            456666777777777776666  99999999999997443 2 1346799999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      |         +|.    |||++|.+||+|.+|+|++.++...+..++++++....  .+   .++++++++++|+.|++|
T Consensus       871 i---------e~~----eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~--~~---~~~l~~~l~~~Lp~ymvP  932 (1304)
T 2vsq_A          871 I---------ELE----EIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ--LS---AEDVKAHLKKQLPAYMVP  932 (1304)
T ss_dssp             E---------EHH----HHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS--SC---HHHHHHHHHHHSCGGGSC
T ss_pred             e---------CHH----HHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC--CC---HHHHHHHHHHhChHhhhc
Confidence            9         999    99999999999999999999888778899999987652  23   268999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcccc-cCCCCCCCchHHHHHHHHHccC
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNRPE  255 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~  255 (258)
                      ..++.++++|+|+||||+|++|++....... ....+.+..|+.+.++|++++.
T Consensus       933 ~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~~~~~vL~  986 (1304)
T 2vsq_A          933 QTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLG  986 (1304)
T ss_dssp             SEEEEESCCCCCSSCSSCCSCCCCCCGGGGCCCCCCCSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEecccCCCCCcccCHhhcCCcchhhhcccccCCCChHHHHHHHHHHHHcC
Confidence            9999999999999999999999776543321 3456778889999999999875

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=99.96  E-value=4.4e-31  Score=251.96  Aligned_cols=171  Identities=19%  Similarity=0.307  Sum_probs=54.1

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+++++..++.+..|+..+.|+..+.  ||+++++.++..|.        .+|||+|||+|++|+||+|+++||.||+
T Consensus       372 ~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~~~--------~~g~~~TGDl~~~~~dG~l~~~GR~dd~  441 (550)
T 3rix_A          372 KVVDLDTGKTLGVNQRGELCVRGPMIMS--GYVNNPEATNALID--------KDGWLHSGDIAYWDEDEHFFIVDRLKSL  441 (550)
T ss_dssp             EEECTTTCCBCCTTCCEEEEEESTTSCS--EETTCHHHHHHHBC--------TTSCEEEEEEEEECTTCCEEEC------
T ss_pred             EEEeCCCCcCCCCCCCeEEEEeCCCcch--hhcCChhhhhhhcC--------CCCCeecCcEEEEeCCceEEEEecchhe
Confidence            4556666777777777777777777766  99999999999884        4789999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      ||++|++|         +|.    +||++|.+||+|.+|+|++.+++..++.++++|++.++...+.   ++++++++++
T Consensus       442 ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~~~~~  505 (550)
T 3rix_A          442 IKYKGYQV---------APA----ELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE---KEIVDYVASQ  505 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCH---HHHHHHHHHh
Confidence            99999999         999    9999999999999999999999888889999998876654443   6788999999


Q ss_pred             cCCCCCC-cEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        196 IGPFAMP-DVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       196 l~~~~~p-~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ++++++| ..+++++++|+|++|||+|++|++++.+..
T Consensus       506 l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  543 (550)
T 3rix_A          506 VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK  543 (550)
T ss_dssp             --------------------------------------
T ss_pred             cccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence            9888655 469999999999999999999999987654

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=99.96  E-value=4e-31  Score=249.72  Aligned_cols=169  Identities=22%  Similarity=0.353  Sum_probs=52.9

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC--C
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV--D  113 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~--~  113 (258)
                      .|.++ ++..++.+..|+..+.|...+.  ||+++++.++..|.         +|||+|||+|++|+||+|+++||.  |
T Consensus       333 ~i~d~-~~~~~~~g~~GEl~v~g~~~~~--gY~~~~~~t~~~f~---------~g~~~TGDl~~~~~dG~l~~~GR~d~~  400 (509)
T 3ivr_A          333 AVVDA-EDRPLPPGEVGEIVLRGPTVFK--GYWNNAAATQHAFR---------NGWHHTGDMGRFDADGYLFYAGRAPEK  400 (509)
T ss_dssp             EEECT-TSCBCCTTCCEEEEEESTTSCC--EETTCHHHHHHHTG---------GGSEEEEEEEEECTTSCEEEEEEC---
T ss_pred             EEECC-CCCCCCCCCceEEEEecCCccc--cccCCHHHhHHHhh---------cCCcccccEEEECCCceEEEeCCCCcc
Confidence            34443 3666777777776666666665  99999999999985         689999999999999999999999  9


Q ss_pred             CeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHH
Q psy12528        114 DMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVR  193 (258)
Q Consensus       114 d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~  193 (258)
                      |+||++|++|         +|.    +||+.|.+||+|.+|+|++.+++..++.+++++++.++...+.   ++++++++
T Consensus       401 d~ik~~G~~v---------~p~----eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~~l~  464 (509)
T 3ivr_A          401 ELIKTGGENV---------YPA----EVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAA---DALAEFVA  464 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEECCEEE---------CHH----HHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCH---HHHHHHHH
Confidence            9999999999         999    9999999999999999999998888888999998876654443   68999999


Q ss_pred             HhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        194 EKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       194 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ++|+.+++|..++++++||+|++|||+|++|++++.+..
T Consensus       465 ~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~  503 (509)
T 3ivr_A          465 SLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG  503 (509)
T ss_dssp             ---------------------------------------
T ss_pred             hhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcc
Confidence            999999999999999999999999999999999987764

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=99.96  E-value=6.8e-31  Score=251.81  Aligned_cols=174  Identities=22%  Similarity=0.268  Sum_probs=57.6

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+ +++..++.+..|+..+.|..++.  ||+++++.++..|...+-.....+|||+|||+|++|+||+|+|+||.||+
T Consensus       395 ~i~d-~~~~~~~~G~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~  471 (570)
T 4gr5_A          395 YVLD-DDLKPAANGALGELYVAGAGLAH--GYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQ  471 (570)
T ss_dssp             EEEC-TTSCBCCTTCEEEEEEEETTCCC--EETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----
T ss_pred             EEEC-CCCCCCCCCCcEEEEEeecccch--hcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCE
Confidence            4544 34677777777777777777777  99999999999996443222234689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC-CccHHHHHHHHHHHHH
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA-TFNQELVKQLKQQVRE  194 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~l~~  194 (258)
                      ||++|++|         +|.    |||+.|.+||+|.+|+|++.+++..++.++++++..... ..+   .++|+++|++
T Consensus       472 Ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~---~~~l~~~l~~  535 (570)
T 4gr5_A          472 VKIRGFRV---------EPG----EVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPD---AAELRRHVAE  535 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECcEEe---------CHH----HHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcC---HHHHHHHHHh
Confidence            99999999         999    999999999999999999998887788888888875432 222   3689999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHH
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVA  228 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~  228 (258)
                      +|+.+++|..+++++++|+|++|||+|++|++..
T Consensus       536 ~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g  569 (570)
T 4gr5_A          536 ALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG  569 (570)
T ss_dssp             ----------------------------------
T ss_pred             hCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence            9999999999999999999999999999998753

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=99.96  E-value=2.2e-29  Score=238.83  Aligned_cols=165  Identities=27%  Similarity=0.275  Sum_probs=137.5

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+ +++..++.+..|+..+.|...+.  ||+++++.++..|.         ++||+|||++++|+||+|+++||.||+
T Consensus       364 ~i~d-~~g~~~~~g~~GEl~v~g~~~~~--gY~~~~~~t~~~f~---------~~~~~TGDl~~~~~~G~l~~~GR~dd~  431 (529)
T 2v7b_A          364 ELRD-EAGHAVPDGEVGDLYIKGPSAAV--MYWNNREKSRATFL---------GEWIRSGDKYCRLPNGCYVYAGRSDDM  431 (529)
T ss_dssp             EEEC-TTSCBCCTTSCEEEEEECTTCCC--CBTTCHHHHHHHEE---------TTEEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred             EEEC-CCCCCCCCCCccEEEEecCCccc--ccCCChHHHHHhhh---------cCCcccCceEEECCCccEEEeCccCCe
Confidence            3444 34566666666766666666555  99999999999885         689999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK  195 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~  195 (258)
                      ||++|++|         +|.    +||+.|.+||+|.+++|++. +...++.+++++++..+....+.+.++++++++++
T Consensus       432 ik~~G~~v---------~p~----eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~  497 (529)
T 2v7b_A          432 LKVSGQYV---------SPV----EVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR  497 (529)
T ss_dssp             BC----CB---------CHH----HHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT
T ss_pred             EEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh
Confidence            99999999         999    99999999999999999998 55567788899998765433333456899999999


Q ss_pred             cCCCCCCcEEEECCCCCCCCCCcccHHHHHH
Q psy12528        196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRK  226 (258)
Q Consensus       196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~  226 (258)
                      |+.+++|..+++++++|+|++||++|++|++
T Consensus       498 L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          498 LAPHKYPRDIVFVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             SCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred             cchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence            9999999999999999999999999999975

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=99.96  E-value=5.3e-30  Score=244.19  Aligned_cols=154  Identities=26%  Similarity=0.408  Sum_probs=99.5

Q ss_pred             CCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeeccc
Q psy12528         51 SMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS  130 (258)
Q Consensus        51 ~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~  130 (258)
                      .|+..+.|+..+.  ||+++++.++..|.        .+|||+|||+|++|+||+|+|+||.||+||++|++|       
T Consensus       383 ~GEl~v~g~~v~~--GY~~~p~~t~~~f~--------~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v-------  445 (541)
T 1v25_A          383 LGEVQLKGPWITG--GYYGNEEATRSALT--------PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI-------  445 (541)
T ss_dssp             CEEEEEESTTSBS--SCBTCHHHHHTTBC--------TTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEE-------
T ss_pred             ceEEEEeCcchhc--cccCChhhhhhhcc--------CCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEE-------
Confidence            4555555555554  99999999998885        478999999999999999999999999999999999       


Q ss_pred             ccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH-hcCCCCCCcEEEECC
Q psy12528        131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE-KIGPFAMPDVIQHAP  209 (258)
Q Consensus       131 ~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~  209 (258)
                        +|.    +||+.|.+||+|.+|+|++.+++..++.++++|++. +...+   .+++++++++ +|+.+++|..+++++
T Consensus       446 --~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~  515 (541)
T 1v25_A          446 --SSV----DLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT---PEELNEHLLKAGFAKWQLPDAYVFAE  515 (541)
T ss_dssp             --EHH----HHHCC----------CEEEEECSSSSEEEEECC-----------------------CCCTTTSCSBC----
T ss_pred             --CHH----HHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC---HHHHHHHHHhccCccccCCcEEEEeC
Confidence              999    999999999999999999999988888999998876 22222   2578888888 899999999999999


Q ss_pred             CCCCCCCCcccHHHHHHHHhcc
Q psy12528        210 RLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       210 ~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++|+|++||++|++|++.+.+.
T Consensus       516 ~lP~t~~GKi~r~~L~~~~~~~  537 (541)
T 1v25_A          516 EIPRTSAGKFLKRALREQYKNY  537 (541)
T ss_dssp             ----------CCTTHHHHSTTS
T ss_pred             CCCCCCccCeeHHHHHHHHHHh
Confidence            9999999999999999987654

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=99.96  E-value=3.2e-30  Score=245.81  Aligned_cols=169  Identities=24%  Similarity=0.335  Sum_probs=57.1

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+ +++..++.+..|+..+.|+..+.  ||+++++.++..|.        .+|||+|||+|++|+||+|+|+||.||
T Consensus       372 ~~i~d-~~~~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~--------~~g~~~TGDlg~~~~dG~l~~~GR~dd  440 (544)
T 3o83_A          372 IKIVD-EQYREVPEGEIGMLATRGPYTFC--GYYQSPEHNSQVFD--------EDNYYYSGDLVQRTPDGNLRVVGRIKD  440 (544)
T ss_dssp             EEEEC-TTSCBCCTTCCEEEEEECTTSCS--CCTTCHHHHHHHBC--------TTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred             EEEEC-CCCCCCCCCCeeEEEEecCCcch--hhcCChhhhhhhCC--------CCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence            34544 45677777777777777777666  99999999999984        479999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|++|         +|.    |||+.|.+||+|.+|+|++.+++..++.++++++..+.. .+   .+.+++++++
T Consensus       441 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-~~---~~~l~~~~~~  503 (544)
T 3o83_A          441 QINRGGEKI---------ASE----EIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE-LK---AVVLRRHLME  503 (544)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEeCCEEE---------CHH----HHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC-CC---HHHHHHHHHh
Confidence            999999999         999    999999999999999999999988888889998876532 22   2578888888


Q ss_pred             -hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        195 -KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 -~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                       +++.+++|..+++++++|+|++||++|++|++++.+.
T Consensus       504 ~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  541 (544)
T 3o83_A          504 LGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS  541 (544)
T ss_dssp             --------------------------------------
T ss_pred             CCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence             6999999999999999999999999999999988654

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.96  E-value=5.3e-30  Score=259.63  Aligned_cols=171  Identities=25%  Similarity=0.404  Sum_probs=61.0

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++++..++.+..|+..+.|+.++.  ||+++++.++..|.        .+|||+|||++++|+||+|+|+||.||
T Consensus       413 ~~i~d~~~~~~~~~g~~GEl~i~g~~v~~--GY~~~p~~t~~~f~--------~~g~~~TGDl~~~~~dG~l~~~GR~dd  482 (979)
T 3tsy_A          413 MKIVDPDTGDSLSRNQPGEICIRGHQIMK--GYLNNPAATAETID--------KDGWLHTGDIGLIDDDDELFIVDRLKE  482 (979)
T ss_dssp             EEEECTTSCCBCCTTCCEEEEEESTTSCS--EETTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEESCC
T ss_pred             EEEEeCCCCCCCCCCCccEEEEECCCccc--cccCChhhhhhhcc--------CCCcEEcCCEEEEcCCceEEEecCCCC
Confidence            46777777888888888887777777776  99999999999884        478999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|++|         +|.    |||+.|.+||+|.+++|++.+++..++.++++|+..++...+.   +++++++++
T Consensus       483 ~ik~~G~~v---------~~~----eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~  546 (979)
T 3tsy_A          483 LIKYKGFQV---------APA----ELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSE---DDVKQFVSK  546 (979)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCH---HHHHHHHHH
Confidence            999999999         999    9999999999999999999998888888999998776544443   689999999


Q ss_pred             hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      +|+.+++|..++++++||+|++|||+|++|++++.+.
T Consensus       547 ~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  583 (979)
T 3tsy_A          547 QVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG  583 (979)
T ss_dssp             -------------------------------------
T ss_pred             hcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence            9999999999999999999999999999999988664

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.96  E-value=4.7e-29  Score=234.93  Aligned_cols=150  Identities=18%  Similarity=0.307  Sum_probs=113.6

Q ss_pred             CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccc
Q psy12528         52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSY  131 (258)
Q Consensus        52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~  131 (258)
                      |+..+.|...+  .||+++++.++. |.         +|||+|||+|++|+||+|+++||.||+||++|++|        
T Consensus       349 GEl~v~g~~~~--~gY~~~~~~t~~-~~---------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v--------  408 (501)
T 3ipl_A          349 GELMIKGANVM--NGYLYPTDLTGT-FE---------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENI--------  408 (501)
T ss_dssp             EEEEEESTTSC--SCCSBSTTCCCS-EE---------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEE--------
T ss_pred             cEEEEeccchh--hhhCcChhhcch-hc---------CCceecCCEEEEcCCCeEEEEccccceEEECCEEE--------
Confidence            33344444444  499999998866 43         68999999999999999999999999999999999        


Q ss_pred             cCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q psy12528        132 CSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL  211 (258)
Q Consensus       132 ~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~l  211 (258)
                       +|.    +||+.|.+||+|.+|+|++.+++..++.++++++....  .+.   ++++++++++|+.+++|..+++++++
T Consensus       409 -~p~----eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~--~~~---~~l~~~l~~~L~~~~~P~~i~~v~~l  478 (501)
T 3ipl_A          409 -YPY----QIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD--ISK---AQLIAYLSKHLAKYKVPKHFEKVDTL  478 (501)
T ss_dssp             -CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC--CCH---HHHHHHHHHHSCGGGSCSEEEECSSC
T ss_pred             -CHH----HHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC--CCH---HHHHHHHHhhCccccCCCEEEEeccc
Confidence             999    99999999999999999999998888888888887543  232   68999999999999999999999999


Q ss_pred             CCCCCCcccHHHHHHHHhcc
Q psy12528        212 PKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       212 P~t~~GKi~r~~l~~~~~~~  231 (258)
                      |+|++|||+|++|++.....
T Consensus       479 P~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          479 PYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             C-------------------
T ss_pred             CCCCCCCEeHHHHhhccccc
Confidence            99999999999999876554

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=99.95  E-value=8e-30  Score=243.50  Aligned_cols=175  Identities=17%  Similarity=0.244  Sum_probs=54.4

Q ss_pred             EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528         36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM  115 (258)
Q Consensus        36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~  115 (258)
                      .|.+++.+..++.+..|+..+.|+..+.  ||+++++.++..+.       ++++||+|||+|++|+||+|+|+||.||+
T Consensus       359 ~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~p~~t~~~~~-------~g~~w~~TGDlg~~d~dG~l~~~GR~dd~  429 (562)
T 3ite_A          359 HVLAPGSNEHVKKGMAGELVIEGSLVAN--GYLNRPDAKGFCDI-------NGRKMYRTGDIVRMDADSSILFLGRKDEQ  429 (562)
T ss_dssp             EEECTTSSCBCCTTSCEEEEEESTTSCC--EESSCTTCCSEEEE-------TTEEEEEEEEEEEECTTSCEEEEEEC---
T ss_pred             EEEeCCCCCCCCCCCceEEEEeccccch--hhCCCccccccccC-------CCCEEEecCCEEEEcCCCeEEEEccccCE
Confidence            4555666777787777777777777766  99999998865543       23459999999999999999999999999


Q ss_pred             eEECcEEEEeeecccccCCCCCHHHHHHHHHcC-CCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc----------HHH
Q psy12528        116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH-PDVSEAAVVSRPHPVKGECLYCFITPAGGATFN----------QEL  184 (258)
Q Consensus       116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~-~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~----------~~~  184 (258)
                      ||++|++|         +|.    |||++|.+| +.+.+++++..+++..++..++.++...+....          +.+
T Consensus       430 Ik~~G~~v---------~p~----eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  496 (562)
T 3ite_A          430 VKVRGQRL---------ELG----EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEI  496 (562)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeECcEEE---------CHH----HHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhH
Confidence            99999999         999    999999998 778888888888877666555544443322211          122


Q ss_pred             HHHHHHHHHHhcCCCCCCcEEEECCCCCCC-CCCcccHHHHHHHHhccc
Q psy12528        185 VKQLKQQVREKIGPFAMPDVIQHAPRLPKT-RSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       185 ~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t-~~GKi~r~~l~~~~~~~~  232 (258)
                      .++|+++|+++|+.|++|+.++++++||+| .+||++|++|++++.+..
T Consensus       497 ~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~  545 (562)
T 3ite_A          497 NNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLS  545 (562)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccC
Confidence            358999999999999999999999999998 999999999999987653

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=99.95  E-value=5e-28  Score=231.81  Aligned_cols=180  Identities=16%  Similarity=0.119  Sum_probs=138.4

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++.+..++.+..|+..+.|+.++.  ||+++++.++..|.........+.+||+|||+|++| +|+|+|+||.||
T Consensus       383 v~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd  459 (590)
T 3kxw_A          383 VKIIDPDTLIPCDFDQVGEIWVQSNSVAK--GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKD  459 (590)
T ss_dssp             EEEECTTTCCBCCTTBCEEEEEESTTSCC--CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSC
T ss_pred             eEEEcCCCCcCCCCCCEEEEEEeCCcccc--cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccc
Confidence            44555566777777777777777777776  999999999999974321111123499999999998 999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHH-HcCCCcc--eEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACL-ASHPDVS--EAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQ  191 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l-~~~~~v~--~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~  191 (258)
                      +||++|++|         +|.    +||+.| .++|.|.  +|+|++++++. ++.+++++++..+.. .....+++.+.
T Consensus       460 ~Ik~~G~~v---------~p~----eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~-~~~~~~~l~~~  524 (590)
T 3kxw_A          460 LIIIYGKNH---------YPQ----DIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM-DDVAQDNLFNE  524 (590)
T ss_dssp             HHHHHHHTT---------HHH----HHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC-CHHHHHHHHHH
T ss_pred             eEEECCEec---------CHH----HHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc-cchhHHHHHHH
Confidence            999999999         999    999999 8899998  79999988765 677888888876531 11123456666


Q ss_pred             HHHhcCC-CCCCc---EEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        192 VREKIGP-FAMPD---VIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       192 l~~~l~~-~~~p~---~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ++++++. +++|.   .++.+++||+|++|||+|++|++++.+..
T Consensus       525 l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~  569 (590)
T 3kxw_A          525 IFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKT  569 (590)
T ss_dssp             HHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCC
Confidence            6666553 45553   45555899999999999999999998765

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.94  E-value=1e-27  Score=217.94  Aligned_cols=176  Identities=16%  Similarity=0.212  Sum_probs=132.6

Q ss_pred             ceecCCCCCceEEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccC
Q psy12528         24 FTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDED  103 (258)
Q Consensus        24 ~~~yG~te~~~~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~  103 (258)
                      ++.||+||++......+..+     ...++.+..++....  +|.++.+....   +.    ...+|||+|||++++|++
T Consensus       176 ~~~YG~TEt~~~~~~~~~~~-----~~~g~~~~~~pgv~~--~~~~~Gel~~~---g~----~~~~g~~~TGDlg~~d~~  241 (358)
T 4gs5_A          176 YQSYGMTETVSHVALKALNG-----PEASELYVFLPGIQY--GVDERGCLHIS---GA----VTNGQTVQTNDLVEIHGN  241 (358)
T ss_dssp             EEEEECGGGSSEEEEEECSS-----TTCCSCEEECTTCEE--EECTTSEEEEE---SG----GGTTCCEEEEEEEEECSS
T ss_pred             Eeccccccccceeecccccc-----cccceeeccCCCeEE--EecCcCceEEe---cc----cccCcceecCCccccccC
Confidence            58899999776433333221     123344444444333  66555443211   11    135799999999999988


Q ss_pred             CcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHH---cCCCcceEEEE-eeeCCCCCcEEEEEEEeCCCCC
Q psy12528        104 GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLA---SHPDVSEAAVV-SRPHPVKGECLYCFITPAGGAT  179 (258)
Q Consensus       104 G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~---~~~~v~~a~vv-~~~~~~~~~~~~~~v~~~~~~~  179 (258)
                      | ++++||.||+||++|++|         +|.    +||+.|.   .||+|.+|+|+ ..+++..++.++++++....  
T Consensus       242 g-~~~~GR~dd~Ik~~G~~v---------~p~----eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~--  305 (358)
T 4gs5_A          242 A-FQWIGRADNVINSGGVKI---------VLD----QIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP--  305 (358)
T ss_dssp             E-EEEEEEGGGEEEETTEEE---------EHH----HHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC--
T ss_pred             c-eEEcccccCeEEECCEEE---------CHH----HHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC--
Confidence            8 667799999999999999         999    9998774   68999998776 67788888888888876543  


Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        180 FNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       180 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                        +...++|+++|+++|+.|++|+.+++++++|+|++|||+|++|++.+.+.
T Consensus       306 --~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~  355 (358)
T 4gs5_A          306 --EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS  355 (358)
T ss_dssp             --HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred             --CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence              33347899999999999999999999999999999999999999987664

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.87  E-value=1.5e-22  Score=187.43  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=95.7

Q ss_pred             CCCeeecCceEEEccCC------c---EEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEe
Q psy12528         88 TNNSDLLLSSARRDEDG------Y---LWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS  158 (258)
Q Consensus        88 ~~~w~~TGDl~~~d~~G------~---l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~  158 (258)
                      ..+||+|||+++++++|      +   ++|+||.||+||++|.+|         +|.    +||++|.+||+|.++++++
T Consensus       297 ~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v---------~p~----eiE~~l~~~p~v~~~~vv~  363 (436)
T 3qov_A          297 PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNI---------FPM----QVEKILVQFPELGSNYLIT  363 (436)
T ss_dssp             CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEE---------CHH----HHHHHHTTCTTEEEEEEEE
T ss_pred             eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEE---------CHH----HHHHHHHhCcCcCCcEEEE
Confidence            36899999999999998      5   699999999999999999         999    9999999999999999999


Q ss_pred             eeCCCCCcEEEEEEEeCCCCCcc-HHHHHHHHHHHHHhcCCC-CCCcEEEECC--CCCCCCCCcccHH
Q psy12528        159 RPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPF-AMPDVIQHAP--RLPKTRSGKIMRR  222 (258)
Q Consensus       159 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~l~~~l~~~-~~p~~~~~~~--~lP~t~~GKi~r~  222 (258)
                      .+++..++.++++|++. +...+ ....+++++.++++++.+ +.|..+.+++  ++|+|+ ||++|.
T Consensus       364 ~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~  429 (436)
T 3qov_A          364 LETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV  429 (436)
T ss_dssp             EEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred             EEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence            98877788999999988 44332 222356667777776666 7888999998  999999 999885

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.86  E-value=5.1e-22  Score=184.22  Aligned_cols=122  Identities=17%  Similarity=0.150  Sum_probs=101.7

Q ss_pred             CCeeecCceEEEccC-CcE-----EEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCC
Q psy12528         89 NNSDLLLSSARRDED-GYL-----WVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP  162 (258)
Q Consensus        89 ~~w~~TGDl~~~d~~-G~l-----~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~  162 (258)
                      .+||+|||+++++++ |++     +++||.||+||++|.+|         +|.    +||++|.+||+|.+++++++++.
T Consensus       305 ~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v---------~p~----eiE~~l~~~p~V~~~~vv~~~~~  371 (443)
T 2y4o_A          305 VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNV---------FPS----QIEEIVVALPLLSGQFQITLSRD  371 (443)
T ss_dssp             CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEEE
T ss_pred             hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEE---------CHH----HHHHHHHhCcCcCccEEEEEecC
Confidence            589999999999999 987     89999999999999999         999    99999999999999999988876


Q ss_pred             CCCcEEEEEEEeCC--CCCccHHHHHHHHHHHHHhcCCC-CCCcEEEEC--CCCCCCCCCcccHHH
Q psy12528        163 VKGECLYCFITPAG--GATFNQELVKQLKQQVREKIGPF-AMPDVIQHA--PRLPKTRSGKIMRRV  223 (258)
Q Consensus       163 ~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GKi~r~~  223 (258)
                      ..++.++++|++.+  +........+++++.|+++++.+ .+|..+.++  +++|+|++||++|..
T Consensus       372 ~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~  437 (443)
T 2y4o_A          372 GHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI  437 (443)
T ss_dssp             TTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred             CCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence            66788889998875  22112222357778888888765 488877777  599999999999864

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.83  E-value=2.1e-21  Score=179.78  Aligned_cols=121  Identities=18%  Similarity=0.143  Sum_probs=102.4

Q ss_pred             CCeeecCceEEEcc-CCcE-----EEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCC
Q psy12528         89 NNSDLLLSSARRDE-DGYL-----WVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP  162 (258)
Q Consensus        89 ~~w~~TGDl~~~d~-~G~l-----~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~  162 (258)
                      .+||+|||++++|+ +|++     +++||.||+||++|.+|         +|.    +||++|.+||+|.+++++++++.
T Consensus       303 ~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v---------~p~----eiE~~l~~~p~V~~~~vv~~~~~  369 (437)
T 2y27_A          303 IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNV---------FPT----QIEEQLLKQRALAPHYQIVLTKE  369 (437)
T ss_dssp             CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEE---------CHH----HHHHHHTTCTTBCSCCEEEEEEE
T ss_pred             hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEE---------CHH----HHHHHHHhCcCcCccEEEEEeec
Confidence            68999999999998 6985     89999999999999999         999    99999999999999999888877


Q ss_pred             CCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCC-CCCcEEEEC--CCCCCCCCCcccHHH
Q psy12528        163 VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF-AMPDVIQHA--PRLPKTRSGKIMRRV  223 (258)
Q Consensus       163 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GKi~r~~  223 (258)
                      ..++.++++|++.++........+++++.|+++++.+ .+|..+.++  +++|+|+ ||++|..
T Consensus       370 ~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~  432 (437)
T 2y27_A          370 GPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV  432 (437)
T ss_dssp             TTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred             CCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence            6678899999887654322222457788888888777 588888888  5899999 9999863

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.57  E-value=5.8e-15  Score=111.68  Aligned_cols=95  Identities=16%  Similarity=0.247  Sum_probs=72.3

Q ss_pred             eeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHH---
Q psy12528        110 GRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVK---  186 (258)
Q Consensus       110 GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---  186 (258)
                      .|.||||+++|.++         +|.    +||++|.+||+|.+++++++++..+++.+.++++...+...+....+   
T Consensus         1 srADDmIiv~G~nv---------~P~----eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~   67 (109)
T 3lax_A            1 SNADDMIILKGVNI---------FPI----QIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALT   67 (109)
T ss_dssp             CGGGSCEEETTEEE---------CHH----HHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred             CCcCEEEEECCEEE---------CHH----HHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhH
Confidence            38999999999999         999    99999999999999999999998888999999998877655544334   


Q ss_pred             -HHHHHHHHhcCCCCCCcEEEEC--CCCCCCCCCcccH
Q psy12528        187 -QLKQQVREKIGPFAMPDVIQHA--PRLPKTRSGKIMR  221 (258)
Q Consensus       187 -~l~~~l~~~l~~~~~p~~~~~~--~~lP~t~~GKi~r  221 (258)
                       .+++.+.+++.   ++..+.++  +.||+| +||++|
T Consensus        68 ~~i~~~l~~~~g---v~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           68 REITRQLKDEIL---VTPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             HHHHHHHHHHHS---SCCEEEEECTTCSCCC----CCC
T ss_pred             HHHHHHHHHHhC---CccceEEEcCCeecCC-CCCcch
Confidence             44455555443   33344444  579999 799987

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.23  E-value=6.9e-12  Score=116.54  Aligned_cols=74  Identities=11%  Similarity=0.033  Sum_probs=55.9

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCc---CcCCCCeeecCceEEEccCCcEEEEee
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNF---SFTTNNSDLLLSSARRDEDGYLWVTGR  111 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~---~~~~~~w~~TGDl~~~d~~G~l~~~GR  111 (258)
                      +.|.+++++..++.++.|+..+.|+.++.  ||+++++.|++.|......   ....+|||+|||+|++| ||+|+|+||
T Consensus       404 ~~ivd~~~g~~~~~g~~GEl~v~g~~v~~--GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          404 VRIVDSDTCIECPDGTVGEIWVHGDNVAN--GYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             EEEEETTTTEECCTTBCEEEEEESTTSCC--CBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             EEEEcCCCCcCCCCCCEEEEEEeCCcccc--ccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            34555556777888888887777777777  9999999999999522111   11357899999999997 999999998

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=95.12  E-value=0.022  Score=54.40  Aligned_cols=44  Identities=5%  Similarity=-0.042  Sum_probs=39.5

Q ss_pred             eecCceEEEcc----CCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcC
Q psy12528         92 DLLLSSARRDE----DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH  148 (258)
Q Consensus        92 ~~TGDl~~~d~----~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~  148 (258)
                      |++||+++++.    ...+.|+||.++++++.|.++         .+.    ++|+++.+.
T Consensus       400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl---------~~~----~v~~al~~a  447 (581)
T 4eql_A          400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKT---------NEE----DLFKAVSQA  447 (581)
T ss_dssp             EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCE---------EHH----HHHHHHHHC
T ss_pred             EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeEC---------CHH----HHHHHHHHH
Confidence            89999999975    457999999999999999999         888    999998854

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=95.09  E-value=0.049  Score=52.29  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=38.8

Q ss_pred             eecCceEEEcc----CCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHc
Q psy12528         92 DLLLSSARRDE----DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLAS  147 (258)
Q Consensus        92 ~~TGDl~~~d~----~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~  147 (258)
                      |++||+++++.    ...+.|+||.+++|++.|.++         .+.    ++|+++..
T Consensus       412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki---------~~~----~v~~av~~  458 (609)
T 4b2g_A          412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKT---------DEA----ELQKAVDN  458 (609)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCB---------CHH----HHHHHHHH
T ss_pred             eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCC---------CHH----HHHHHHHH
Confidence            89999999973    468999999999999999999         999    99998873

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=94.31  E-value=0.11  Score=49.50  Aligned_cols=43  Identities=12%  Similarity=-0.041  Sum_probs=38.2

Q ss_pred             eecCceEEEccC----CcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHc
Q psy12528         92 DLLLSSARRDED----GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLAS  147 (258)
Q Consensus        92 ~~TGDl~~~d~~----G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~  147 (258)
                      |++||.++++.-    ..+.|+||.++++++.|.++         .+.    ++|.++..
T Consensus       407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~---------~~~----~v~~al~~  453 (581)
T 4epl_A          407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKN---------TER----DLQLSVES  453 (581)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCB---------CHH----HHHHHHHH
T ss_pred             EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeEC---------CHH----HHHHHHHH
Confidence            899999999642    46999999999999999999         998    99998874

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=89.80  E-value=0.11  Score=45.81  Aligned_cols=31  Identities=13%  Similarity=-0.079  Sum_probs=13.6

Q ss_pred             eeecCceEEEccC--C-------cEEEEeeCCCeeEECcE
Q psy12528         91 SDLLLSSARRDED--G-------YLWVTGRVDDMLNVSGH  121 (258)
Q Consensus        91 w~~TGDl~~~d~~--G-------~l~~~GR~~d~i~~~G~  121 (258)
                      +|+|||++++...  |       .+..++|.++..++.|.
T Consensus       329 ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          329 RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            4889999987432  2       35666777777777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	5e-47
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	7e-42
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-32
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	5e-32
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-32
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	9e-32
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	2e-29

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  163 bits (413), Expect = 5e-47
 Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 16/158 (10%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
           ARRDEDGY W+TGRVDD+LNVSGH              ++ T E+E+ L +HP ++EAAV
Sbjct: 498 ARRDEDGYYWITGRVDDVLNVSGH--------------RLGTAEIESALVAHPKIAEAAV 543

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V  PH +KG+ +Y ++T   G   + EL  +++  VR++IGP A PDV+     LPKTRS
Sbjct: 544 VGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRS 603

Query: 217 GKIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
           GKIMRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 604 GKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 641

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  149 bits (376), Expect = 7e-42
 Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 23/164 (14%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
           A +D+DGY+W+ GRVDD++NVSGH              ++ T E+EA +   P V+E AV
Sbjct: 488 AAKDKDGYIWILGRVDDVVNVSGH--------------RLSTAEIEAAIIEDPIVAECAV 533

Query: 157 VSRPHPVKGECLYCFITPAGGATFN-------QELVKQLKQQVREKIGPFAMPDVIQHAP 209
           V     + G+ +  F+     ++++       Q++ K L   VR+ IGPFA P +I    
Sbjct: 534 VGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVD 593

Query: 210 RLPKTRSGKIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQN 252
            LPKTRSGKIMRR+LRK+   +  ++GD STL++  +V  L  +
Sbjct: 594 DLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDS 637

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  122 bits (306), Expect = 2e-32
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 19/138 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
           A  DED + ++  R+  ++   G+              +V   E+E+ L  HP++ +A V
Sbjct: 421 AYWDEDEHFFIVDRLKSLIKYKGY--------------QVAPAELESILLQHPNIFDAGV 466

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM-PDVIQHAPRLPKTR 215
              P    GE     +    G T  ++   ++   V  ++         +     +PK  
Sbjct: 467 AGLPDDDAGELPAAVVVLEHGKTMTEK---EIVDYVASQVTTAKKLRGGVVFVDEVPKGL 523

Query: 216 SGKIMRRVLRKVAVNDRE 233
           +GK+  R +R++ +  ++
Sbjct: 524 TGKLDARKIREILIKAKK 541

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  120 bits (302), Expect = 5e-32
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
           AR   DG +   GR+D+ + + GH              +V   EVE+ L  H  +SE AV
Sbjct: 399 ARWLSDGNIEYLGRIDNQVKIRGH--------------RVELEEVESILLKHMYISETAV 444

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
                  +   L  +             ++QL+Q   E++  + +P       ++P T +
Sbjct: 445 SVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSN 499

Query: 217 GKIMRRVLR 225
           GKI R+ L 
Sbjct: 500 GKIDRKQLP 508

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  120 bits (301), Expect = 8e-32
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 18/131 (13%)

Query: 99  RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAVV 157
           R   DGY+ V GR  D +N  G               KV   EVE  L +HP V +AA+V
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGE--------------KVAAEEVENHLLAHPAVHDAAMV 461

Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
           S P    GE    FI P   A    EL   L+++    +  + +PD ++     P+T  G
Sbjct: 462 SMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERG---LAAYKIPDRVEFVESFPQTGVG 518

Query: 218 KIMRRVLRKVA 228
           K+ ++ LR+  
Sbjct: 519 KVSKKALREAI 529

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  120 bits (301), Expect = 9e-32
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 18/134 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
           A  DE+GY+ +  R+ D++   G                + + ++E  L  HP V EAAV
Sbjct: 413 AVWDEEGYVEIKDRLKDLIKSGGE--------------WISSVDLENALMGHPKVKEAAV 458

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           V+ PHP   E     + P G     +EL + L   ++     + +PD    A  +P+T +
Sbjct: 459 VAIPHPKWQERPLAVVVPRGEKPTPEELNEHL---LKAGFAKWQLPDAYVFAEEIPRTSA 515

Query: 217 GKIMRRVLRKVAVN 230
           GK ++R LR+   N
Sbjct: 516 GKFLKRALREQYKN 529

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  113 bits (282), Expect = 2e-29
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 17/130 (13%)

Query: 98  ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
           A    +G + + GRVDDM+   G                +   E+E  L + P V+E  V
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGE--------------NIHPSEIERVLGTAPGVTEVVV 432

Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
           +       G+ +   + P  G T + + +    +    ++  F  P       +LPK   
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQLPKNAL 490

Query: 217 GKIMRRVLRK 226
            K++RR L +
Sbjct: 491 NKVLRRQLVQ 500

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.97
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.97
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.96
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.96
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	99.96
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.95

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.2e-33  Score=272.79  Aligned_cols=192  Identities=43%  Similarity=0.688  Sum_probs=157.2

Q ss_pred             CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528         43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL  122 (258)
Q Consensus        43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~  122 (258)
                      |.+++.+..|+..+.|..+....+|+++++.+...+..      ..+|||+|||+|++|+||+|+|+||.||+||++|++
T Consensus       449 g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~------~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~r  522 (643)
T d1pg4a_         449 GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS------TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHR  522 (643)
T ss_dssp             CCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS------SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEE
T ss_pred             CCCCCCCceEEEEEecCCCcccccccCChhhchhhhcc------cCCCeEEcCCEEEECCCceEEEecccccEEEECCEE
Confidence            44444433333333332222236899999887665532      357999999999999999999999999999999999


Q ss_pred             EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528        123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP  202 (258)
Q Consensus       123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p  202 (258)
                      |         +|.    |||++|.+||+|.+|+|++++++..++.+++||++.++...++++.++|+++++++|+++++|
T Consensus       523 i---------~p~----eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP  589 (643)
T d1pg4a_         523 L---------GTA----EIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATP  589 (643)
T ss_dssp             E---------EHH----HHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCC
T ss_pred             E---------CHH----HHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCc
Confidence            9         999    999999999999999999999988899999999999988888888889999999999999999


Q ss_pred             cEEEECCCCCCCCCCcccHHHHHHHHhcccc-cCCCCCCCchHHHHHHHHHc
Q psy12528        203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNR  253 (258)
Q Consensus       203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~  253 (258)
                      +.++++++||+|++|||+|+.|++++..+.. ..+..+..+++.++++.+++
T Consensus       590 ~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~~~~t~~~p~~l~~~~~~~  641 (643)
T d1pg4a_         590 DVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK  641 (643)
T ss_dssp             SEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTHHHHHHHHH
T ss_pred             cEEEEECCCCCCCCcCccHHHHHHHhcCCccccCCccccCChHHHHHHHHHh
Confidence            9999999999999999999999999988644 67888999999999998765

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-32  Score=263.96  Aligned_cols=171  Identities=37%  Similarity=0.607  Sum_probs=140.4

Q ss_pred             cccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHH
Q psy12528         64 SLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEA  143 (258)
Q Consensus        64 ~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~  143 (258)
                      ..||+++++.+...|..      +.+|||+|||+|++|+||+|+|+||.||+||++|++|         +|.    +||+
T Consensus       460 ~~gy~~~~e~t~~~~~~------~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I---------~p~----eIE~  520 (640)
T d1ry2a_         460 ARTIWKNHDRYLDTYLN------PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL---------STA----EIEA  520 (640)
T ss_dssp             CCEETTCHHHHHHHHTS------SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCB---------CHH----HHHH
T ss_pred             ccccccCHHHHHhhhcc------CCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEE---------CHH----HHHH
Confidence            36999999998877642      3579999999999999999999999999999999999         999    9999


Q ss_pred             HHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc-------HHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCC
Q psy12528        144 CLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-------QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS  216 (258)
Q Consensus       144 ~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~  216 (258)
                      +|.+||.|.+|+|++++++..++.++|||++.++....       +++.+++.+.++++|+++++|+.++++++||+|++
T Consensus       521 ~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~s  600 (640)
T d1ry2a_         521 AIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRS  600 (640)
T ss_dssp             HHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTT
T ss_pred             HHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCC
Confidence            99999999999999999988899999999988764322       23457899999999999999999999999999999


Q ss_pred             CcccHHHHHHHHhcccc-cCCCCCCCchHHHHHHHHHc
Q psy12528        217 GKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNR  253 (258)
Q Consensus       217 GKi~r~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~  253 (258)
                      |||+|++||+++.++.. .++.++..+|+.+.++.+.+
T Consensus       601 GKi~R~~Lr~~~~~~~~~~~d~~tl~np~~l~~~~~~~  638 (640)
T d1ry2a_         601 GKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDSV  638 (640)
T ss_dssp             SCBCHHHHHHSCC-------------CCHHHHHHHHTT
T ss_pred             cCccHHHHHHHHhCCccccCCcchhcCHHHHHHHHHHh
Confidence            99999999999977543 67889999999999988754

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=99.97  E-value=1.3e-31  Score=249.75  Aligned_cols=172  Identities=19%  Similarity=0.314  Sum_probs=143.6

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      +.|.+++++..++.+..|+..+.|+.++.  ||+++++.+...+.        .++||+|||++++|++|+++++||.||
T Consensus       368 ~~i~d~d~~~~~~~g~~Gel~v~g~~~~~--gY~~~~~~~~~~~~--------~~~~~~TGDl~~~~~~G~~~~~GR~~d  437 (541)
T d1lcia_         368 AKVVDLDTGKTLGVNQRGELCVRGPMIMS--GYVNNPEATNALID--------KDGWLHSGDIAYWDEDEHFFIVDRLKS  437 (541)
T ss_dssp             EEEECTTTCCBCCTTCCEEEEEESTTSCS--EETTBHHHHHHHBC--------TTSCEEEEEEEEECTTCCEEEC-----
T ss_pred             EEEEECCCCcCCCCCCeEEEEEccCccCC--eeCCChhhhhhccc--------CCccccCCCeeEEcCCeEEEEeeeecC
Confidence            56778888888888887777777766666  99999999888775        579999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|++|         +|.    +||+.|.+||+|.+|+|++++++..++.++++|++.++...+.   +++++++++
T Consensus       438 ~i~~~G~~v---------~~~----~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~  501 (541)
T d1lcia_         438 LIKYKGYQV---------APA----ELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE---KEIVDYVAS  501 (541)
T ss_dssp             CEEETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHH
T ss_pred             EEEECCEEE---------CHH----HHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCH---HHHHHHHHH
Confidence            999999999         999    9999999999999999999999888899999999987776664   678999999


Q ss_pred             hcCCCC-CCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528        195 KIGPFA-MPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR  232 (258)
Q Consensus       195 ~l~~~~-~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~  232 (258)
                      ++.++. .|..+++++++|+|++|||+|++|++++.+++
T Consensus       502 ~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  540 (541)
T d1lcia_         502 QVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK  540 (541)
T ss_dssp             HSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHHT
T ss_pred             hCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHhC
Confidence            998775 79999999999999999999999999998765

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.96  E-value=5.4e-30  Score=237.73  Aligned_cols=164  Identities=20%  Similarity=0.252  Sum_probs=143.2

Q ss_pred             CCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECc
Q psy12528         41 RLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSG  120 (258)
Q Consensus        41 ~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G  120 (258)
                      +++..++.+..|+..+.|+..+.  ||++++..+...|....  ..+.++||+|||+|++|+||+|+|+||.+|+|+++|
T Consensus       346 ~~~~~~~~g~~GEl~v~~~~~~~--gY~~~~~~~~~~~~~~~--~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G  421 (514)
T d1amua_         346 ENLQLKSVGEAGELCIGGEGLAR--GYWKRPELTSQKFVDNP--FVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRG  421 (514)
T ss_dssp             TTSCBCCTTCEEEEEEEETTCCC--EETTCHHHHHHHEEECS--SSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETT
T ss_pred             ccceecCCCCeeEEEEccCcccc--cccccccccceeeEecc--ccCCCceEEECCEEEECCCCcEEEEecccCEEEECC
Confidence            44566677777777777766666  99999999988886332  224579999999999999999999999999999999


Q ss_pred             EEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCC
Q psy12528        121 HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFA  200 (258)
Q Consensus       121 ~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~  200 (258)
                      +++         +|.    +||++|.+||+|.+|+|++.+++..++.++|++++.++.+     .++|+++++++|++++
T Consensus       422 ~~i---------~p~----~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~-----~~~l~~~~~~~l~~~~  483 (514)
T d1amua_         422 HRV---------ELE----EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTYM  483 (514)
T ss_dssp             EEE---------EHH----HHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCC-----HHHHHHHHHHHSCGGG
T ss_pred             EEE---------CHH----HHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCCC-----HHHHHHHHHhhCCccc
Confidence            999         999    9999999999999999999999888999999998877643     2578999999999999


Q ss_pred             CCcEEEECCCCCCCCCCcccHHHHHH
Q psy12528        201 MPDVIQHAPRLPKTRSGKIMRRVLRK  226 (258)
Q Consensus       201 ~p~~~~~~~~lP~t~~GKi~r~~l~~  226 (258)
                      +|..++++++||+|++|||+|++|++
T Consensus       484 ~p~~i~~v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         484 IPSYFIQLDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             SCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred             CceEEEEeCCCCCCCCcChhHHhcCC
Confidence            99999999999999999999998875

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.96  E-value=5.8e-29  Score=227.68  Aligned_cols=139  Identities=24%  Similarity=0.373  Sum_probs=128.0

Q ss_pred             ccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHH
Q psy12528         65 LKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEAC  144 (258)
Q Consensus        65 ~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~  144 (258)
                      .+|++++..+++.|.         +|||+|||+|++|+||+|+++||.||+||++|++|         +|.    +||++
T Consensus       363 ~~~~~~~~~t~~~~~---------~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v---------~~~----~IE~~  420 (503)
T d3cw9a1         363 VGYLNQPQATAEKLQ---------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI---------HPS----EIERV  420 (503)
T ss_dssp             CCBTTCHHHHHHHEE---------TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEE---------CHH----HHHHH
T ss_pred             ccccCChhhhHHHhc---------CCceecccccccccCCeEEeCCCcCCeEEECCEEE---------CHH----HHHHH
Confidence            588999999988885         68999999999999999999999999999999999         999    99999


Q ss_pred             HHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHH-HhcCCCCCCcEEEECCCCCCCCCCcccHHH
Q psy12528        145 LASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVR-EKIGPFAMPDVIQHAPRLPKTRSGKIMRRV  223 (258)
Q Consensus       145 l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~  223 (258)
                      |.+||+|.+|+|++.+++..++.++++|++..+...+.   +++++.++ ++|+.+++|+.|+++++||+|++|||+|++
T Consensus       421 l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~  497 (503)
T d3cw9a1         421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA---DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQ  497 (503)
T ss_dssp             HTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHH
T ss_pred             HHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHH
Confidence            99999999999999999888899999999987766664   67888885 569999999999999999999999999999


Q ss_pred             HHHHH
Q psy12528        224 LRKVA  228 (258)
Q Consensus       224 l~~~~  228 (258)
                      |+++.
T Consensus       498 L~~~~  502 (503)
T d3cw9a1         498 LVQQV  502 (503)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99875

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=6.7e-30  Score=238.69  Aligned_cols=170  Identities=24%  Similarity=0.371  Sum_probs=106.5

Q ss_pred             EEEEeCCCCCcCCC--CCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC
Q psy12528         35 ISILEPRLGDDLNL--TLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV  112 (258)
Q Consensus        35 ~~i~~~~~g~~~~~--~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~  112 (258)
                      +.|.++ ++.+++.  +..|+..+.|+.++.  ||+++++.++..|.        .+|||+|||+|++|+||.|+++||.
T Consensus       359 ~~i~d~-~~~~~~~~~~~~Gel~v~g~~v~~--gY~~~~~~t~~~~~--------~dg~~~TGDlg~~~~~G~l~~~GR~  427 (534)
T d1v25a_         359 LRVADE-EGRPVPKDGKALGEVQLKGPWITG--GYYGNEEATRSALT--------PDGFFRTGDIAVWDEEGYVEIKDRL  427 (534)
T ss_dssp             EEEECT-TSCBCCSSSCCCEEEEEESTTSBS--SCBTCHHHHHTTBC--------TTSCEEEEEEEEECTTCCEEEEEES
T ss_pred             EEEECC-CCCCCCCCCCeeEEEEEcCCcccc--eecCChhhhhhhcc--------cCCCCccCceeEECCCccEEEeccc
Confidence            344443 3455544  334455555555555  99999999998885        4789999999999999999999999


Q ss_pred             CCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHH
Q psy12528        113 DDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV  192 (258)
Q Consensus       113 ~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l  192 (258)
                      ||+||++|+++         +|.    +||+.|.+||+|.+|+|++++++..++.++|+|++.......+   +.++.++
T Consensus       428 ~~~i~~~G~~v---------~~~----eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~---~~~~~~~  491 (534)
T d1v25a_         428 KDLIKSGGEWI---------SSV----DLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE---ELNEHLL  491 (534)
T ss_dssp             SCEEEETTEEE---------EHH----HHHCC----------CEEEEECSSSSEEEEECC--------------------
T ss_pred             ccEEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCHH---HHHHHHH
Confidence            99999999999         999    9999999999999999999999888999999988876544443   2344457


Q ss_pred             HHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        193 REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       193 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      ++.|+++++|..|++++++|+|++|||+|++||+++++.
T Consensus       492 ~~~l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~  530 (534)
T d1v25a_         492 KAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY  530 (534)
T ss_dssp             --CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred             HhcCCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence            778999999999999999999999999999999998664

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=4.6e-28  Score=224.88  Aligned_cols=170  Identities=26%  Similarity=0.380  Sum_probs=151.3

Q ss_pred             EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528         35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD  114 (258)
Q Consensus        35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d  114 (258)
                      ..++..+.+..++.++.|+....|...+.  ||++++..+...+.        .++||+|||++++|+||+|+++||.||
T Consensus       362 ~~~v~~~~g~~~~~~~~Gel~v~g~~~~~--gY~~~~~~~~~~~~--------~~~~~~tGD~~~~~~dG~l~~~GR~~d  431 (536)
T d1mdba_         362 ESRVWDDHDRDVKPGETGHLLTRGPYTIR--GYYKAEEHNAASFT--------EDGFYRTGDIVRLTRDGYIVVEGRAKD  431 (536)
T ss_dssp             EEEEECTTSCBCCTTCCEEEEEECTTSCS--SCTTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEEGGG
T ss_pred             eEEEEcCCCCeecccccceeecCCCcccc--cccccccccccccc--------ccCccccCccccccCCCceecCCCcce
Confidence            34556677888888888888888877777  99999998888775        579999999999999999999999999


Q ss_pred             eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528        115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE  194 (258)
Q Consensus       115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~  194 (258)
                      +||++|+++         +|.    +||+.|.+||+|.+|+|++.+++..++.++++|++.++....    +++++.+++
T Consensus       432 ~i~~~G~~i---------~p~----~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~----~~l~~~l~~  494 (536)
T d1mdba_         432 QINRGGEKV---------AAE----EVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKA----AELKAFLRE  494 (536)
T ss_dssp             CEECSSCEE---------CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCH----HHHHHHHHH
T ss_pred             EEEECCEEE---------CHH----HHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCH----HHHHHHHHh
Confidence            999999999         999    999999999999999999999888888999999988765444    578888887


Q ss_pred             h-cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528        195 K-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND  231 (258)
Q Consensus       195 ~-l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~  231 (258)
                      + ++++++|..+++++++|+|++|||+|++|+++++++
T Consensus       495 ~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  532 (536)
T d1mdba_         495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK  532 (536)
T ss_dssp             TTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred             cCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHH
Confidence            6 999999999999999999999999999999998653