Psyllid ID: psy12553

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MEEIHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKESPYGGSKVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQLIFFLGLR
cccccccccccccccccccccccccEEEEcccccccccccEEEcccccccccccccEEEEEEEEcccccHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHcccccEEEEccccccccccccEEEEEccccccccEEHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccEEHHHHHcccccHHHHHHHHHHHHHHHHHHHEEEcccc
cccccccccccccccccccccccccEEEcccccHHcccccEEEEEEEEcccccEccEEEEEEEccccccHHHHHHccccccccccHHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHccccEEEEEccccccccccEEEEEccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccEEEEcHHHHHHHHHcccccEEEcccccccccccccccccEHHHccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
meeihtasnvTEVESCIrsndnsrnliisstipescksqpcvlgideagrgpvlgpmvygtaycpkdnneELLKNLgcadskalteKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVyvdtvgppesykKKLSEIFPELIITVAskadstypVVGAAIaskadstypvvGAASICAKvsrdsalkswtfqegiqiennawgsgypgdpvtkkflsenidpvfgfpqlvRFSWSTASKILKEKAVlvegdeiddeeeegenkkTRSIRNFfkpkadenvespvveerhaffkespyggskVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQLIFFLGLR
meeihtasnvteVESCIRSNDNSRNLIISstipescksqPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYvdtvgppesykkkLSEIFPELIITVASKADSTYPVVGAAIaskadstypVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILkekavlvegdeiddeeeegenkktrsirnffkpkadenvespVVEERHAffkespyggsKVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQlifflglr
MEEIHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVegdeiddeeeegeNKKTRSIRNFFKPKADENVESPVVEERHAFFKESPYGGSKVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQLIFFLGLR
*************************LIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLV****************************************HAFFKESPYGGSKVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQLIFFLG**
**************************IISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDE**************************************FFKESPYGGSKVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQLIFFLGLR
*************ESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGD**************RSIRNFFKPKADENVESPVVEERHAFFKESPYGGSKVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQLIFFLGLR
****************I******RNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEI**********************************RHAFFKESPYGGSKVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQLIFFLGLR
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MEEIHTASNVTEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKESPYGGSKVFEVLNSTYLNILEMAHFIGKKLNLTSIDLLFYIPLLTRNLEVKLKSKFFKLGEELKHQLIFFLGLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
Q9VPP5347 Ribonuclease H2 subunit A yes N/A 0.720 0.832 0.554 5e-88
Q2TBT5299 Ribonuclease H2 subunit A yes N/A 0.705 0.946 0.448 2e-71
O75792299 Ribonuclease H2 subunit A yes N/A 0.665 0.892 0.471 1e-69
Q9CWY8301 Ribonuclease H2 subunit A yes N/A 0.708 0.943 0.442 1e-68
Q5U209301 Ribonuclease H2 subunit A yes N/A 0.655 0.873 0.475 2e-68
Q9U6P6297 Ribonuclease H2 subunit A yes N/A 0.658 0.888 0.493 1e-67
Q9SEZ6296 Ribonuclease H2 subunit A yes N/A 0.650 0.881 0.460 9e-60
Q54D13289 Ribonuclease H2 subunit A yes N/A 0.643 0.892 0.416 4e-56
Q10236326 Ribonuclease H2 subunit A yes N/A 0.638 0.785 0.443 3e-53
Q9P5X8317 Ribonuclease H2 subunit A N/A N/A 0.610 0.772 0.405 7e-42
>sp|Q9VPP5|RNH2A_DROME Ribonuclease H2 subunit A OS=Drosophila melanogaster GN=CG13690 PE=2 SV=1 Back     alignment and function desciption
 Score =  325 bits (832), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 174/314 (55%), Positives = 216/314 (68%), Gaps = 25/314 (7%)

Query: 17  IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
           I   +NSRN +  S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+  L++L
Sbjct: 47  IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNK-ALEDL 105

Query: 77  GCADSKALTEKKRDDILDSI-CKENA--WLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
           GCADSK LTE KRD I + I  KE A   +GW VEIISPN I  SM RR K SLNEVS D
Sbjct: 106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165

Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
           +A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP   ITVA KADSTY       
Sbjct: 166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTY------- 218

Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
                   P+V AASICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct: 219 --------PIVSAASICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270

Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENV 313
           D VFGFP+LVRFSWSTA   L +KA  +E DE D E+ +    K   +  FFK       
Sbjct: 271 DLVFGFPRLVRFSWSTAENALADKAYDMEFDEPDSEKPKYAGTK---LTKFFKGTTKSG- 326

Query: 314 ESPVVEERHAFFKE 327
              ++ E   FFK+
Sbjct: 327 --EIIREECRFFKQ 338
Catalytic subunit of RNase HII, an endonuclease that specifically degrades the RNA of RNA:DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. Mediates the excision of single ribonucleotides from DNA:RNA duplexes.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 4
>sp|Q2TBT5|RNH2A_BOVIN Ribonuclease H2 subunit A OS=Bos taurus GN=RNASEH2A PE=1 SV=1 Back     alignment and function description
>sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2 Back     alignment and function description
>sp|Q9CWY8|RNH2A_MOUSE Ribonuclease H2 subunit A OS=Mus musculus GN=Rnaseh2a PE=1 SV=2 Back     alignment and function description
>sp|Q5U209|RNH2A_RAT Ribonuclease H2 subunit A OS=Rattus norvegicus GN=Rnaseh2a PE=2 SV=1 Back     alignment and function description
>sp|Q9U6P6|RNH2A_CAEEL Ribonuclease H2 subunit A OS=Caenorhabditis elegans GN=rnh-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SEZ6|RNH2A_ARATH Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2 SV=2 Back     alignment and function description
>sp|Q54D13|RNH2A_DICDI Ribonuclease H2 subunit A OS=Dictyostelium discoideum GN=rnaseh2A PE=3 SV=1 Back     alignment and function description
>sp|Q10236|RNH2A_SCHPO Ribonuclease H2 subunit A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rnh201 PE=3 SV=1 Back     alignment and function description
>sp|Q9P5X8|RNH2A_NEUCR Ribonuclease H2 subunit A OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rnh-201 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
195118270342 GI18036 [Drosophila mojavensis] gi|19391 0.675 0.792 0.590 8e-89
195470258347 GE16128 [Drosophila yakuba] gi|194173526 0.730 0.844 0.550 3e-88
427795471325 Putative ribonuclease hi, partial [Rhipi 0.703 0.867 0.544 4e-88
194766523347 GF24795 [Drosophila ananassae] gi|190617 0.720 0.832 0.554 9e-88
194853461347 GG24650 [Drosophila erecta] gi|190660035 0.730 0.844 0.550 1e-87
195388322339 GJ19740 [Drosophila virilis] gi|19414928 0.710 0.840 0.563 3e-87
198473777340 GA12461 [Drosophila pseudoobscura pseudo 0.740 0.873 0.546 4e-87
195456019336 GK22869 [Drosophila willistoni] gi|19417 0.680 0.812 0.578 4e-87
195147238340 GL19264 [Drosophila persimilis] gi|19410 0.740 0.873 0.549 4e-87
195032708334 GH10519 [Drosophila grimshawi] gi|193904 0.675 0.811 0.576 8e-87
>gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis] gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis] Back     alignment and taxonomy information
 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 173/293 (59%), Positives = 212/293 (72%), Gaps = 22/293 (7%)

Query: 17  IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
           I + +NS+N +  S +P  CK QPC+LG+DEAGRGPVLGPMVYG +YCP  N++E L  L
Sbjct: 42  IAARENSKNTVYLSDVPAICKDQPCMLGVDEAGRGPVLGPMVYGISYCPL-NSKEALVEL 100

Query: 77  GCADSKALTEKKRDDI---LDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
           GCADSK LTE+KRD I   ++++   N+ +GW VEIISPNVI NSM RR K SLNEVS D
Sbjct: 101 GCADSKQLTEEKRDIIFNDMNTLEYANSCIGWAVEIISPNVISNSMYRRSKCSLNEVSMD 160

Query: 134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
           +A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP   ITVA KADSTY       
Sbjct: 161 SAMGLIQRAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPNFKITVAKKADSTY------- 213

Query: 194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
                   P+V AASICAKV+RD ALK W F EG+ I++NA+GSGYPGDPVTK+FL+ENI
Sbjct: 214 --------PIVSAASICAKVTRDHALKVWQFPEGLVIKDNAFGSGYPGDPVTKRFLTENI 265

Query: 254 DPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFK 306
           D VFGFP+LVRFSWSTA   L +KA  +E DE D E+ +    K   +  FFK
Sbjct: 266 DLVFGFPRLVRFSWSTAENALADKAYEMEFDEPDTEKPKYAGTK---LTKFFK 315

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba] gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|427795471|gb|JAA63187.1| Putative ribonuclease hi, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae] gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta] gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis] gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis] Back     alignment and taxonomy information
>gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura] gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni] gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis] gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi] gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
FB|FBgn0031252347 CG13690 [Drosophila melanogast 0.613 0.708 0.607 3.8e-78
ZFIN|ZDB-GENE-040426-976307 rnaseh2a "ribonuclease H2, sub 0.720 0.941 0.470 1e-68
UNIPROTKB|Q2TBT5299 RNASEH2A "Ribonuclease H2 subu 0.603 0.809 0.503 7.6e-64
UNIPROTKB|E2RQK5299 RNASEH2A "Ribonuclease" [Canis 0.603 0.809 0.5 4.2e-63
UNIPROTKB|F1SDX8301 RNASEH2A "Ribonuclease" [Sus s 0.603 0.803 0.488 1.1e-62
MGI|MGI:1916974301 Rnaseh2a "ribonuclease H2, lar 0.603 0.803 0.5 2.3e-62
RGD|1307248301 Rnaseh2a "ribonuclease H2, sub 0.603 0.803 0.5 7.9e-62
UNIPROTKB|Q5U209301 Rnaseh2a "Ribonuclease H2 subu 0.603 0.803 0.5 7.9e-62
WB|WBGene00004383297 rnh-2 [Caenorhabditis elegans 0.558 0.754 0.528 1.9e-58
GENEDB_PFALCIPARUM|PFF1150w288 PFF1150w "ribonuclease H1 larg 0.541 0.753 0.519 5.3e-56
FB|FBgn0031252 CG13690 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 161/265 (60%), Positives = 196/265 (73%)

Query:    17 IRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNL 76
             I   +NSRN +  S +P+ CK +PC+LG+DEAGRGPVLGPMVYG +YCP ++N+ L ++L
Sbjct:    47 IAGKENSRNTVYLSDVPDICKDKPCMLGVDEAGRGPVLGPMVYGISYCPLESNKAL-EDL 105

Query:    77 GCADSKALTEKKRDDILDSI-CKENAW--LGWMVEIISPNVICNSMLRRQKYSLNEVSHD 133
             GCADSK LTE KRD I + I  KE A   +GW VEIISPN I  SM RR K SLNEVS D
Sbjct:   106 GCADSKQLTEGKRDIIFNDINTKEYATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMD 165

Query:   134 AAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAI 193
             +A+GLI++ I AGVN+ EVYVDTVGPPE Y++KL + FP   ITVA KADSTYP+V AA 
Sbjct:   166 SAMGLIQQAIDAGVNIAEVYVDTVGPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAA- 224

Query:   194 ASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENI 253
                           SICAKV+RD ALK W+F EG+ I++N +GSGYPGDPVT++FL+E I
Sbjct:   225 --------------SICAKVTRDHALKVWSFPEGLVIKDNEFGSGYPGDPVTRRFLTEYI 270

Query:   254 DPVFGFPQLVRFSWSTASKILKEKA 278
             D VFGFP+LVRFSWSTA   L +KA
Sbjct:   271 DLVFGFPRLVRFSWSTAENALADKA 295
GO:0004523 "ribonuclease H activity" evidence=ISS;NAS
GO:0003723 "RNA binding" evidence=IEA
GO:0016070 "RNA metabolic process" evidence=IEA
ZFIN|ZDB-GENE-040426-976 rnaseh2a "ribonuclease H2, subunit A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBT5 RNASEH2A "Ribonuclease H2 subunit A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQK5 RNASEH2A "Ribonuclease" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDX8 RNASEH2A "Ribonuclease" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1916974 Rnaseh2a "ribonuclease H2, large subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307248 Rnaseh2a "ribonuclease H2, subunit A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U209 Rnaseh2a "Ribonuclease H2 subunit A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00004383 rnh-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFF1150w PFF1150w "ribonuclease H1 large subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53942RNH2A_YEAST3, ., 1, ., 2, 6, ., 40.34690.64330.8403yesN/A
Q9U6P6RNH2A_CAEEL3, ., 1, ., 2, 6, ., 40.49310.65830.8888yesN/A
Q2TBT5RNH2A_BOVIN3, ., 1, ., 2, 6, ., 40.44800.70570.9464yesN/A
Q9CWY8RNH2A_MOUSE3, ., 1, ., 2, 6, ., 40.44290.70820.9435yesN/A
Q9SEZ6RNH2A_ARATH3, ., 1, ., 2, 6, ., 40.46090.65080.8817yesN/A
Q54D13RNH2A_DICDI3, ., 1, ., 2, 6, ., 40.41600.64330.8927yesN/A
Q9VPP5RNH2A_DROME3, ., 1, ., 2, 6, ., 40.55410.72060.8328yesN/A
Q5U209RNH2A_RAT3, ., 1, ., 2, 6, ., 40.4750.65580.8737yesN/A
O75792RNH2A_HUMAN3, ., 1, ., 2, 6, ., 40.47180.66580.8929yesN/A
Q10236RNH2A_SCHPO3, ., 1, ., 2, 6, ., 40.44360.63840.7852yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.260.921
3rd Layer3.1.26.40.914

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
cd07181221 cd07181, RNase_HII_eukaryota_like, Mammalian RNase 1e-129
cd06266210 cd06266, RNase_HII, Ribonuclease H (RNase H) type 1e-114
pfam01351199 pfam01351, RNase_HII, Ribonuclease HII 2e-48
TIGR00729206 TIGR00729, TIGR00729, ribonuclease H, mammalian HI 2e-44
cd07180204 cd07180, RNase_HII_Archaea_like, Archaeal ribonucl 2e-42
COG0164199 COG0164, RnhB, Ribonuclease HII [DNA replication, 6e-40
PRK14551212 PRK14551, rnhB, ribonuclease HII; Provisional 6e-25
PRK00015197 PRK00015, rnhB, ribonuclease HII; Validated 2e-24
cd07182179 cd07182, RNase_HII_bacteria_HII_like, bacterial Ri 2e-15
cd06590207 cd06590, RNase_HII_bacteria_HIII_like, bacterial R 3e-12
PRK13925198 PRK13925, rnhB, ribonuclease HII; Provisional 3e-08
PRK00996304 PRK00996, PRK00996, ribonuclease HIII; Provisional 4e-08
COG1039297 COG1039, RnhC, Ribonuclease HIII [DNA replication, 2e-06
PRK13926207 PRK13926, PRK13926, ribonuclease HII; Provisional 2e-05
TIGR00716284 TIGR00716, rnhC, ribonuclease HIII 3e-04
PRK14550204 PRK14550, rnhB, ribonuclease HII; Provisional 3e-04
>gnl|CDD|187694 cd07181, RNase_HII_eukaryota_like, Mammalian RNase HII is functional when it forms a complex with two other accessory protein Back     alignment and domain information 
 Score =  370 bits (953), Expect = e-129
 Identities = 140/237 (59%), Positives = 168/237 (70%), Gaps = 16/237 (6%)

Query: 43  LGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAW 102
           LGIDEAGRGPVLGPMVYG AYCP    EEL K LG ADSK LTE+KR+++   + +++  
Sbjct: 1   LGIDEAGRGPVLGPMVYGAAYCPISYKEEL-KKLGFADSKTLTEEKREELFKKLKEKDDA 59

Query: 103 LGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPES 162
           LGW   I+SP  I   ML R KY+LNE+SHDAAIGLIR+V+  GVNV EVYVDTVGPPE 
Sbjct: 60  LGWATRILSPQYISTKMLARTKYNLNEISHDAAIGLIREVLDKGVNVTEVYVDTVGPPEK 119

Query: 163 YKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSW 222
           Y+ KL + FP +  TV                 KADS YP+V AASI AKV+RD ALK+W
Sbjct: 120 YQAKLQKKFPGIKFTV---------------EKKADSLYPIVSAASIVAKVTRDRALKNW 164

Query: 223 TFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEKAV 279
            F E +  ++   GSGYP DP TKK+L +N+DPVFG+PQLVRFSWSTA  IL++KAV
Sbjct: 165 QFDETLIKDSGDLGSGYPSDPKTKKWLKKNVDPVFGYPQLVRFSWSTAKTILEKKAV 221

Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. The enzyme can be found in bacteria, archaea, and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite a lack of evidence for homology from sequence comparisons, type I and type II RNase H share a common fold and similar steric configurations of the four acidic active-site residues, suggesting identical or very similar catalytic mechanisms. Eukaryotic RNase HII is active during replication and is believed to play a role in removal of Okazaki fragment primers and single ribonucleotides in DNA-DNA duplexes. Eukaryotic RNase HII is functional when it forms a complex with two other accessory proteins. It is speculated that the two accessory subunits are required for correct folding of the catalytic subunit of RNase HII. Mutations in the three subunits of human RNase HII cause neurological disorder. Length = 221
>gnl|CDD|187691 cd06266, RNase_HII, Ribonuclease H (RNase H) type II family (prokaryotic RNase HII and HIII, and eukaryotic RNase H2/HII) Back     alignment and domain information
>gnl|CDD|216451 pfam01351, RNase_HII, Ribonuclease HII Back     alignment and domain information
>gnl|CDD|129812 TIGR00729, TIGR00729, ribonuclease H, mammalian HI/archaeal HII subfamily Back     alignment and domain information
>gnl|CDD|187693 cd07180, RNase_HII_Archaea_like, Archaeal ribonuclease HII Back     alignment and domain information
>gnl|CDD|223242 COG0164, RnhB, Ribonuclease HII [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|237752 PRK14551, rnhB, ribonuclease HII; Provisional Back     alignment and domain information
>gnl|CDD|234574 PRK00015, rnhB, ribonuclease HII; Validated Back     alignment and domain information
>gnl|CDD|187695 cd07182, RNase_HII_bacteria_HII_like, bacterial Ribonuclease HII-like Back     alignment and domain information
>gnl|CDD|187692 cd06590, RNase_HII_bacteria_HIII_like, bacterial Ribonuclease HIII-like Back     alignment and domain information
>gnl|CDD|184399 PRK13925, rnhB, ribonuclease HII; Provisional Back     alignment and domain information
>gnl|CDD|234886 PRK00996, PRK00996, ribonuclease HIII; Provisional Back     alignment and domain information
>gnl|CDD|223969 COG1039, RnhC, Ribonuclease HIII [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|184400 PRK13926, PRK13926, ribonuclease HII; Provisional Back     alignment and domain information
>gnl|CDD|129799 TIGR00716, rnhC, ribonuclease HIII Back     alignment and domain information
>gnl|CDD|173015 PRK14550, rnhB, ribonuclease HII; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
KOG2299|consensus301 100.0
cd07181216 RNaseH_typeII_eukaryota_like Eukaryotic Ribonuclea 100.0
cd07180204 RNaseH_typeII_Archaea_like Archaeal ribonuclease H 100.0
PRK14551212 rnhB ribonuclease HII; Provisional 100.0
TIGR00729206 ribonuclease H, mammalian HI/archaeal HII subfamil 100.0
COG0164199 RnhB Ribonuclease HII [DNA replication, recombinat 100.0
PRK00015197 rnhB ribonuclease HII; Validated 100.0
cd06266193 RNaseH_typeII Ribonuclease H type II. Ribonuclease 100.0
PRK14550204 rnhB ribonuclease HII; Provisional 100.0
cd07182179 RNaseH_typeII_bacteria_HII_like bacterial Ribonucl 100.0
cd06590208 RNaseH_typeII_bacteria_HIII_like bacterial Ribonuc 100.0
PRK13926207 ribonuclease HII; Provisional 100.0
PRK13925198 rnhB ribonuclease HII; Provisional 100.0
PF01351198 RNase_HII: Ribonuclease HII; InterPro: IPR024567 R 100.0
PRK00996304 ribonuclease HIII; Provisional 100.0
TIGR00716284 rnhC ribonuclease HIII. Two types of ribonuclease 100.0
COG1039297 RnhC Ribonuclease HIII [DNA replication, recombina 99.97
>KOG2299|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.7e-86  Score=627.47  Aligned_cols=297  Identities=50%  Similarity=0.819  Sum_probs=269.8

Q ss_pred             ccchhhhhccCCCCceEEecCCCcCCCCCCcEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHH
Q psy12553         11 TEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRD   90 (401)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~s~~p~~~~~~~~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe   90 (401)
                      |+++++  +++|+..+.++|++|+.|++.||++||||||||||+||||||++|||.+.. ..|..+||+|||+|++.+|+
T Consensus         1 ~~~~sl--~~~~~~~s~~~s~vp~~~~~~PcvlGIDEAGRGPVLGPMVYa~~ycP~~~~-~~l~~lgfaDSK~L~e~kRe   77 (301)
T KOG2299|consen    1 MLPPSL--EKENPSKSIYFSPVPDEQKSEPCVLGIDEAGRGPVLGPMVYAAAYCPLDYL-EDLENLGFADSKTLTEAKRE   77 (301)
T ss_pred             CCCccc--cccCcccceeccCCcccccCCceEeeccccCCCCcccceeeEEEeccchhh-hhhhhcCccchhhccHHHHH
Confidence            567777  889999999999999999999999999999999999999999999999998 78999999999999999999


Q ss_pred             HHHHHHhhc---cceeeEEEEEEChHhHHHHhHhHhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCCCccchhhhh
Q psy12553         91 DILDSICKE---NAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKL  167 (401)
Q Consensus        91 ~L~~~I~~~---~~~v~~aV~visp~eId~~ml~~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g~p~~Y~~~L  167 (401)
                      +||+.|++.   ...+||++.+|||++|++.|++++++|||+++|++|+.||+.+++.|+++.+|||||+|+|.+||++|
T Consensus        78 ~lf~~i~~d~~~~~~vgwA~~~isP~~IS~~Ml~r~kynLNevshdsam~LI~~v~~~gvnvteiyVDTVGpp~~Yq~kL  157 (301)
T KOG2299|consen   78 ELFNKIKEDEELTSNVGWATDCISPREISASMLRRNKYNLNEVSHDSAMGLIDEVLDQGVNVTEIYVDTVGPPAKYQEKL  157 (301)
T ss_pred             HHHHHHhhhhhhhhceeeEeeecCHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHhCCceEEEEEecCCChHHHHHHH
Confidence            999999864   24689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCcceEEEeecCCCCCccccccccccCCCccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCHHHHH
Q psy12553        168 SEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKK  247 (401)
Q Consensus       168 ~~~fp~i~i~v~~KADs~y~v~~~~~~~kgD~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yGsGYPSDp~Tk~  247 (401)
                      ++.||+++++|..||||+               ||+|||||||||||||+.+++|++.|.+.....+||||||+||+|++
T Consensus       158 ek~FP~~k~tV~kKADSl---------------fpiVS~ASI~AKVtRD~alk~w~~~E~~~~~d~~~GSGYP~DP~T~~  222 (301)
T KOG2299|consen  158 EKRFPGIKFTVTKKADSL---------------FPIVSAASIVAKVTRDRALKEWQFEEKLSDPDEDLGSGYPSDPETKA  222 (301)
T ss_pred             HhhCCCeEEEEeeccccc---------------ccchhhhhhhhhhhhccccceeeeeeecccCCccccCCCCCChhHHH
Confidence            999999999999999999               99999999999999999999999999877778899999999999999


Q ss_pred             HHHhcCCCCcccccccccCchhHHHHhhccCceeeeccCCchhhhhccccccccccccccCCCCCCCCcccccccccccc
Q psy12553        248 FLSENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKE  327 (401)
Q Consensus       248 ~L~~~i~~~fG~p~~hR~SW~tvk~il~~~~~~v~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~r~~ff~~  327 (401)
                      ||+.+++++||||++|||||+|++.+|++++.++.|++++.+.   .+....++++||+++...+   +  ..|...| +
T Consensus       223 wLk~~v~~VFGfp~lVRfSW~Ta~t~L~~~~~~~~~e~~~~e~---~~~~~~~~T~~~~~~~~s~---~--~~r~~~~-~  293 (301)
T KOG2299|consen  223 WLKENVDSVFGFPSLVRFSWKTAKTLLEDRSEPLKWEESGFEL---DKTPLLKFTKKFKPNPASR---S--VPRSERF-E  293 (301)
T ss_pred             HHHhcccccccCccceeeeHHHHHHHHhcccccceeecccccc---cchHHHHHHHHhcCCCccc---c--cchhHHH-H
Confidence            9999999999999999999999999999999999998764431   1123567899998753222   2  2233355 9


Q ss_pred             CCCCCcc
Q psy12553        328 SPYGGSK  334 (401)
Q Consensus       328 r~l~~~~  334 (401)
                      |+|+++.
T Consensus       294 r~l~~~~  300 (301)
T KOG2299|consen  294 RHLENWY  300 (301)
T ss_pred             Hhhhhhc
Confidence            9998764

>cd07181 RNaseH_typeII_eukaryota_like Eukaryotic Ribonuclease HII; putative role in Okazaki fragment removal during replication Back     alignment and domain information
>cd07180 RNaseH_typeII_Archaea_like Archaeal ribonuclease HII Back     alignment and domain information
>PRK14551 rnhB ribonuclease HII; Provisional Back     alignment and domain information
>TIGR00729 ribonuclease H, mammalian HI/archaeal HII subfamily Back     alignment and domain information
>COG0164 RnhB Ribonuclease HII [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00015 rnhB ribonuclease HII; Validated Back     alignment and domain information
>cd06266 RNaseH_typeII Ribonuclease H type II Back     alignment and domain information
>PRK14550 rnhB ribonuclease HII; Provisional Back     alignment and domain information
>cd07182 RNaseH_typeII_bacteria_HII_like bacterial Ribonuclease HII-like Back     alignment and domain information
>cd06590 RNaseH_typeII_bacteria_HIII_like bacterial Ribonuclease HIII-like Back     alignment and domain information
>PRK13926 ribonuclease HII; Provisional Back     alignment and domain information
>PRK13925 rnhB ribonuclease HII; Provisional Back     alignment and domain information
>PF01351 RNase_HII: Ribonuclease HII; InterPro: IPR024567 Ribonuclease HII and HIII are endonucleases that specifically degrade the RNA of RNA-DNA hybrids Back     alignment and domain information
>PRK00996 ribonuclease HIII; Provisional Back     alignment and domain information
>TIGR00716 rnhC ribonuclease HIII Back     alignment and domain information
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3puf_A302 Crystal Structure Of Human Rnase H2 Complex Length 2e-69
3p5j_A301 The Structure Of The Human Rnase H2 Complex Defines 8e-69
3p56_A299 The Structure Of The Human Rnase H2 Complex Defines 6e-68
3kio_A301 Mouse Rnase H2 Complex Length = 301 7e-67
1uax_A220 Crystal Structure Of The Ribonuclease H2 From Pyroc 5e-23
2dff_A213 Crystal Structure Of Tk-Rnase Hii(1-204)-C Length = 5e-19
2dfh_A221 Crystal Structure Of Tk-Rnase Hii(1-212)-C Length = 5e-19
1io2_A213 Crystal Structure Of Type 2 Ribonuclease H From Hyp 6e-19
1eke_A230 Crystal Structure Of Class Ii Ribonuclease H (Rnase 8e-19
2dfe_A209 Crystal Structure Of Tk-Rnase Hii(1-200)-C Length = 3e-18
1x1p_A212 Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42) L 5e-16
1i39_A225 Rnase Hii From Archaeoglobus Fulgidus Length = 225 1e-15
3p83_D217 Structure Of The Pcna:rnase Hii Complex From Archae 2e-15
>pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex Length = 302 Back     alignment and structure 
Iteration: 1

 Score =  259 bits (663), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/259 (49%), Positives = 174/259 (67%), Gaps = 17/259 (6%)
Query: 20  NDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCA 79
            DN+    +SS +P  C+ +PCVLG+DEAGRGPVLGPMVY   YCP     +L + L  A
Sbjct: 11  RDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADL-EALKVA 69
Query: 80  DSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLI 139
           DSK L E +R+ +   + ++  ++GW ++++SPN+I  SML R KY+LN +SHD A GLI
Sbjct: 70  DSKTLLESERERLFAKM-EDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLI 128
Query: 140 RKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADS 199
           +  +  GVNV +V+VDTVG PE+Y+ +L + FP + +TV +KAD+ YPV           
Sbjct: 129 QYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPV----------- 177
Query: 200 TYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGF 259
               V AASICAKV+RD A+K W F E +Q  +  +GSGYP DP TK +L E+++PVFGF
Sbjct: 178 ----VSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGF 233
Query: 260 PQLVRFSWSTASKILKEKA 278
           PQ VRFSW TA  IL+++A
Sbjct: 234 PQFVRFSWRTAQTILEKEA 252
>pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease Length = 301 Back     alignment and structure
>pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key Interaction Interfaces Relevant To Enzyme Function And Human Disease Length = 299 Back     alignment and structure
>pdb|3KIO|A Chain A, Mouse Rnase H2 Complex Length = 301 Back     alignment and structure
>pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus Horikoshii Ot3 Length = 220 Back     alignment and structure
>pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C Length = 213 Back     alignment and structure
>pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C Length = 221 Back     alignment and structure
>pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From Hyperthermophilic Archaeon, Thermococcus Kodakaraensis Kod1 Length = 213 Back     alignment and structure
>pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii) With Mes Ligand Length = 230 Back     alignment and structure
>pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C Length = 209 Back     alignment and structure
>pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42) Length = 212 Back     alignment and structure
>pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus Length = 225 Back     alignment and structure
>pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. Length = 217 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3kio_A301 Ribonuclease H2 subunit A; aicardi-goutieres syndr 1e-106
1eke_A230 Ribonuclease HII; endonuclease, structural genomic 8e-75
1uax_A220 Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid 3e-73
1i39_A225 Ribonuclease HII, RNAse HII; mixed beta sheet, hel 3e-71
1io2_A213 Ribonuclease HII; endonuclease, hydrolase; 2.00A { 2e-69
2d0b_A310 RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hyd 7e-52
2etj_A250 Ribonuclease HII, RNAse HII; TM0915, ribonuclease 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A Length = 301 Back     alignment and structure
 Score =  314 bits (806), Expect = e-106
 Identities = 136/309 (44%), Positives = 193/309 (62%), Gaps = 23/309 (7%)

Query: 19  SNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGC 78
             DN+    +SS +P  C  +PCVLG+DEAGRGPVLGPMVY   YCP     +L + L  
Sbjct: 7   ERDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADL-EALKV 65

Query: 79  ADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGL 138
           ADSK LTE +R+ +   + ++  ++GW ++++SPN+I  SML R KY+LN +SHD A GL
Sbjct: 66  ADSKTLTENERERLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGL 125

Query: 139 IRKVIAAGVNVREVYVDTVGPPESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKAD 198
           I+  +   VNV +V+VDTVG PE+Y+ +L + FP + +TV                +KAD
Sbjct: 126 IQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTV---------------KAKAD 170

Query: 199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFG 258
           S +PVV AASI AKV+RD A+K+W F E +Q  ++ +GSGYP DP TK +L +++DPVFG
Sbjct: 171 SLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFG 230

Query: 259 FPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVV 318
           FPQ VRFSWSTA  IL+++A  V  ++ + EE+     K   I ++F             
Sbjct: 231 FPQFVRFSWSTAQAILEKEAEDVIWEDSEAEEDPERPGK---ITSYFSQGPQTCRP---- 283

Query: 319 EERHAFFKE 327
           +  H +F+E
Sbjct: 284 QAPHRYFQE 292
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1 Length = 230 Back     alignment and structure
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1 Length = 220 Back     alignment and structure
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D* Length = 225 Back     alignment and structure
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A Length = 213 Back     alignment and structure
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A Length = 310 Back     alignment and structure
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structur genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} SCOP: c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A* Length = 250 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
3kio_A301 Ribonuclease H2 subunit A; aicardi-goutieres syndr 100.0
1eke_A230 Ribonuclease HII; endonuclease, structural genomic 100.0
1i39_A225 Ribonuclease HII, RNAse HII; mixed beta sheet, hel 100.0
1io2_A213 Ribonuclease HII; endonuclease, hydrolase; 2.00A { 100.0
1uax_A220 Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid 100.0
2etj_A250 Ribonuclease HII, RNAse HII; TM0915, ribonuclease 100.0
2d0b_A310 RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hyd 100.0
3vn5_A257 RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {A 100.0
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A Back     alignment and structure
Probab=100.00  E-value=5e-87  Score=654.90  Aligned_cols=300  Identities=45%  Similarity=0.808  Sum_probs=245.3

Q ss_pred             ccchhhhhccCCCCceEEecCCCcCCCCCCcEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHH
Q psy12553         11 TEVESCIRSNDNSRNLIISSTIPESCKSQPCVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRD   90 (401)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~s~~p~~~~~~~~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe   90 (401)
                      |||++|  ++||+.+|++.|+||++|++.++++|||||||||++||||+|||++|.+.. ..|..+||+|||+||+++|+
T Consensus         1 ~~~~~~--~~~~~~~~~~~s~~p~~~~~~~~v~GvDEaGRGplaGPvV~aavil~~~~~-~~l~~~gl~DSKkLs~~kRe   77 (301)
T 3kio_A            1 MDLSEL--ERDNTGRCRLSSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRL-ADLEALKVADSKTLTENERE   77 (301)
T ss_dssp             CCTTTT--GGGTSSEEEEECCCCTHHHHSCEEEEEEEECSSCSBSCEEEEEEEEEGGGG-GGCCCCCSCC--CCCHHHHH
T ss_pred             Cchhhh--hhcCccCEEEeCCCchhhcCCceEEeeeCCCCCCccccceEEEEEEchhhh-hhHhhcCCCccccCCHHHHH
Confidence            899999  999999999999999999999999999999999999999999999999876 67788999999999999999


Q ss_pred             HHHHHHhhccceeeEEEEEEChHhHHHHhHhHhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCCCccchhhhhhhc
Q psy12553         91 DILDSICKENAWLGWMVEIISPNVICNSMLRRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGPPESYKKKLSEI  170 (401)
Q Consensus        91 ~L~~~I~~~~~~v~~aV~visp~eId~~ml~~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g~p~~Y~~~L~~~  170 (401)
                      +||+.|++...+++|+|.+++|++||+.|+++.++|||.++|++++.+|+++++++++++.||||+++.|++|+++|++.
T Consensus        78 ~L~~~I~~~~~a~~~~v~~~s~~eId~~m~~~~~~nlN~l~~~~~~~~i~~~~~l~~~p~~vlVD~~~~p~~y~~~L~~~  157 (301)
T 3kio_A           78 RLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQH  157 (301)
T ss_dssp             HHHHHHHHTTTTCEEEEEEECHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSSCCHHHHHHHHHS
T ss_pred             HHHHHHHhhcccceEEEEecCHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCChHHHHHHHhhc
Confidence            99999996446789999999999999999988889999999999999999999889999999999999999999999999


Q ss_pred             cCcceEEEeecCCCCCccccccccccCCCccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCHHHHHHHH
Q psy12553        171 FPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLS  250 (401)
Q Consensus       171 fp~i~i~v~~KADs~y~v~~~~~~~kgD~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yGsGYPSDp~Tk~~L~  250 (401)
                      +|++++++++|||++               ||+||||||||||+||++|++|.|.+.+.+.+++|||||||||+|++||+
T Consensus       158 ~p~~~~~~~~KgDs~---------------~~sVAAASIlAKV~RD~~M~~~~f~e~l~~~~~~~GsGYPSDp~T~~~L~  222 (301)
T 3kio_A          158 FPGIEVTVKAKADSL---------------FPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLR  222 (301)
T ss_dssp             STTSEEEEETTGGGT---------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSSSTTSHHHHHHHH
T ss_pred             CCCCceEEEeccchh---------------hhHHHHHHHHHHHHHHHHHHHhhhhhhHHhhCCCCCCcCCCCHHHHHHHH
Confidence            999999999999999               99999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcccccccccCchhHHHHhhccCceeeeccCCchhhhhccccccccccccccCCCCCCCCccccccccccccCCC
Q psy12553        251 ENIDPVFGFPQLVRFSWSTASKILKEKAVLVEGDEIDDEEEEGENKKTRSIRNFFKPKADENVESPVVEERHAFFKESPY  330 (401)
Q Consensus       251 ~~i~~~fG~p~~hR~SW~tvk~il~~~~~~v~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~r~~ff~~r~l  330 (401)
                      ++++++||+|++||+||+|++++|++++++|+|++++++++   ..++++|++||.++. +.   +.+++||+||++|+|
T Consensus       223 ~~~~~~~G~p~~vR~SW~tvk~~l~~~~~~v~w~~~~~~~~---~~~~~~~~~~f~~~~-~~---~~~~~~~~~f~~~~l  295 (301)
T 3kio_A          223 KHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED---PERPGKITSYFSQGP-QT---CRPQAPHRYFQERGL  295 (301)
T ss_dssp             TTCBTTTBSCTTBCTTSHHHHHHHHHHSCCEECSCC--------------------------------------------
T ss_pred             HcccccCCCCccccCCcHHHHHHHhcCCceeeecccccccc---cccchhHHHHhcCCC-cc---ccccccchhhHhhcc
Confidence            99999999999999999999999999999999997754221   124679999998652 22   235889999999999


Q ss_pred             CCccc
Q psy12553        331 GGSKV  335 (401)
Q Consensus       331 ~~~~~  335 (401)
                      ++|++
T Consensus       296 ~~~~~  300 (301)
T 3kio_A          296 EAASS  300 (301)
T ss_dssp             -----
T ss_pred             ccccc
Confidence            99875
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1 Back     alignment and structure
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D* Back     alignment and structure
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A Back     alignment and structure
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1 Back     alignment and structure
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structur genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} SCOP: c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A* Back     alignment and structure
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A Back     alignment and structure
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1ekea_225 c.55.3.1 (A:) Class II ribonuclease H (RNase HII) 3e-37
d1uaxa_211 c.55.3.1 (A:) Class II ribonuclease H (RNase HII) 4e-34
d1io2a_213 c.55.3.1 (A:) Class II ribonuclease H (RNase HII) 5e-34
d1i39a_200 c.55.3.1 (A:) Class II ribonuclease H (RNase HII) 2e-28
d2etja1221 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase 1e-20
>d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: Class II ribonuclease H (RNase HII)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  132 bits (333), Expect = 3e-37
 Identities = 74/238 (31%), Positives = 108/238 (45%), Gaps = 20/238 (8%)

Query: 42  VLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENA 101
           ++GIDEAGRGPVLGPMV       K+  EEL K LG  DSK LT+ KR  +   +     
Sbjct: 3   IIGIDEAGRGPVLGPMVVCAFAIEKEREEEL-KKLGVKDSKELTKNKRAYLKKLLENLGY 61

Query: 102 WLGWMVEIISPNVICNSMLRRQ--KYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP 159
               ++E    N + NS+        + ++V+ +    L  +     + +     +T   
Sbjct: 62  VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKF 121

Query: 160 PESYKKKLSEIFPELIITVASKADSTYPVVGAAIASKADSTYPVVGAASICAKVSRDSAL 219
            +S+K K+ +I  E  + +   A+            KAD+ YPVV AASI AK  RD  +
Sbjct: 122 EDSFKDKIEDIIKERNLNIKIIAEH-----------KADAKYPVVSAASIIAKAERDEII 170

Query: 220 KSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKEK 277
             +      +      GSGYP DP T KFL +        P + R  W T  +IL + 
Sbjct: 171 DYY------KKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRILDKS 222
>d1uaxa_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 211 Back     information, alignment and structure
>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} Length = 213 Back     information, alignment and structure
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII) {Thermotoga maritima [TaxId: 2336]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1io2a_213 Class II ribonuclease H (RNase HII) {Archaeon Ther 100.0
d1ekea_225 Class II ribonuclease H (RNase HII) {Archaeon Meth 100.0
d1uaxa_211 Class II ribonuclease H (RNase HII) {Archaeon Pyro 100.0
d1i39a_200 Class II ribonuclease H (RNase HII) {Archaeon Arch 100.0
d2etja1221 Class II ribonuclease H (RNase HII) {Thermotoga ma 100.0
>d1io2a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: Class II ribonuclease H (RNase HII)
species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]

Probab=100.00  E-value=1e-53  Score=395.72  Aligned_cols=204  Identities=35%  Similarity=0.545  Sum_probs=172.8

Q ss_pred             cEeeeccCCCCCCccceeEEEEEeeCCCChhHhhhcCCCCCCcCCHHHHHHHHHHHhhccceeeEEEEEEChHhHHHHhH
Q psy12553         41 CVLGIDEAGRGPVLGPMVYGTAYCPKDNNEELLKNLGCADSKALTEKKRDDILDSICKENAWLGWMVEIISPNVICNSML  120 (401)
Q Consensus        41 ~viGIDEAGRGpv~GPmVvaav~~p~~~~~~~L~~lGv~DSKkLSe~kRe~L~~~I~~~~~~v~~aV~visp~eId~~ml  120 (401)
                      .|+|||||||||+|||||||||++|.+.. ..|..+||+|||+||+++|++|++.|++  .+..|.+..++|++++..+ 
T Consensus         2 ~i~GvDEaGRG~l~GPvvvaav~~~~~~~-~~l~~~gv~DSK~Ls~~kR~~l~~~I~~--~~~~~~i~~~~~~~~~~~~-   77 (213)
T d1io2a_           2 KIAGIDEAGRGPVIGPMVIAAVVVDENSL-PKLEELKVRDSKKLTPKRREKLFNEILG--VLDDYVILELPPDVIGSRE-   77 (213)
T ss_dssp             EEEEEEEECSSCSBSCEEEEEEEEEGGGH-HHHHHTTGGGCTTCCHHHHHHHHHHHHT--TCSEEEEEEECHHHHHTCS-
T ss_pred             cEEeecCcCccccccceEEEEEEEchhhc-chhhhcCcchhhhCcHHHHHHHHHHHHH--HHHHhhhhcccHHHHhhhH-
Confidence            48999999999999999999999999877 7788999999999999999999999994  6778999999999987532 


Q ss_pred             hHhHhhHHHHHHHHHHHHHHHHHHcCCCccEEEEcCCCC-ccchhhhhhhccC-cceEEEeecCCCCCccccccccccCC
Q psy12553        121 RRQKYSLNEVSHDAAIGLIRKVIAAGVNVREVYVDTVGP-PESYKKKLSEIFP-ELIITVASKADSTYPVVGAAIASKAD  198 (401)
Q Consensus       121 ~~~~~NLN~l~~~aai~lI~~~l~~gv~~~~V~VD~~g~-p~~Y~~~L~~~fp-~i~i~v~~KADs~y~v~~~~~~~kgD  198 (401)
                          .|+|.+...++.+.|.   .+...++.+++|++.. +..|...+.+.++ ..++++.+|||++             
T Consensus        78 ----~~~~~~~~~~~~~ai~---~l~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~KgD~~-------------  137 (213)
T d1io2a_          78 ----GTLNEFEVENFAKALN---SLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDI-------------  137 (213)
T ss_dssp             ----SCHHHHHHHHHHHHHH---HCSSCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHH-------------
T ss_pred             ----HHHHHHHHHHHHHHHH---hcCCCCCEEEECcccccchhhhhhhcccccccceeEEeeccccc-------------
Confidence                5777765554444443   2466788999999874 4556666655543 3456677799998             


Q ss_pred             CccchhhhhhHHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCCCCHHHHHHHHhcCCCCcccccccccCchhHHHHhhc
Q psy12553        199 STYPVVGAASICAKVSRDSALKSWTFQEGIQIENNAWGSGYPGDPVTKKFLSENIDPVFGFPQLVRFSWSTASKILKE  276 (401)
Q Consensus       199 ~~yp~VAAASIvAKVtRD~~m~~~~~~e~l~~~~~~yGsGYPSDp~Tk~~L~~~i~~~fG~p~~hR~SW~tvk~il~~  276 (401)
                        ||+||||||||||+||++|.++      ++.||+||+|||+|+.|++|+++++++.+|++++||+||+|++++|++
T Consensus       138 --~~~VAAASIlAKv~RD~~m~~l------~~~y~~~g~GY~s~~h~~a~l~~~~~~~~~~~~~hR~sf~~~k~~l~~  207 (213)
T d1io2a_         138 --FPVVSAASILAKVTRDRAVEKL------KEEYGEIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIAEK  207 (213)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHH------HHHHSCCCSSCTTSHHHHHHHHHHHHHHSSCCTTBCTTCHHHHHHHHH
T ss_pred             --chhhhHHHHHHHHHHHHHHHHH------HHhCCcCCCCCCCHHHHHHHHHhcccccCCCCccccCCcHHHHHHHHH
Confidence              9999999999999999999985      688899999999999999999988777788999999999999999975
>d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1uaxa_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure