Psyllid ID: psy12566

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
MALDIVKDNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEEESEQDVDNGWDVCKPAEEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQLPYK
cHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHcccccEEEEEccccccccccccccccEEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHcccccccccccccEEEHHHHHHHHHHHcccccccc
cHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHccHHHHHHHHHHccHHccccccccccccccEEEccccHccEEEEccHHHHHHHHHHHHHcccccEEEEEccEcccccccccccEEEEEEEEcccEEEEEcHHcccccHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcHHHHHcccccccHEHHHHHHHHHHHHcccEcccc
maldivkdNPELQKELIDLCVQYYDCKEAYYWCqkfklnpncvgfdlRDKIaeeeseqdvdngwdvckpaeeyysltlppnsiilVDTADKFASALQDFARldhnshlgldtewkpnlsggspptlALLQIATRDRVYILDIItlsklpcyaqlcHDLELIVFANDDLLKIGfnlmpdvsiiktslpfsecssynktsyLDLQLLWSKLVAETTLQLPYK
maldivkdnpelQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEeeseqdvdngwDVCKPAEEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVaettlqlpyk
MALDIVKDNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEEESEQDVDNGWDVCKPAEEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQLPYK
************QKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIA******DVDNGWDVCKPAEEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTL*****
MALDIVKDNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDL************************EYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQLPY*
MALDIVKDNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAE********NGWDVCKPAEEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQLPYK
MALDIVKDNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEEES**DVDNGWDVCKPAEEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQLPYK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALDIVKDNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEEESEQDVDNGWDVCKPAEEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQLPYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query220 2.2.26 [Sep-21-2011]
Q179T2 719 Probable exonuclease mut- N/A N/A 0.95 0.290 0.323 6e-21
Q9VIF1625 Probable exonuclease mut- yes N/A 0.904 0.318 0.262 1e-12
Q8N9H8 876 Probable exonuclease mut- yes N/A 0.818 0.205 0.259 1e-09
>sp|Q179T2|MUT7_AEDAE Probable exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527 PE=3 SV=1 Back     alignment and function desciption
 Score =  100 bits (250), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 20/229 (8%)

Query: 1   MALDIVKD-NPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEEESEQD 59
           M  D V + + ELQ EL+ LC  + D  EA  W   ++L  + +   ++D I E+E  + 
Sbjct: 349 MVRDTVSETDRELQLELVCLCSNFNDQPEAAKWAFHYQLKRSDLPLLVQDYILEQEGNKQ 408

Query: 60  V------DNGWDVCKPAEEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTE 113
                  D  WD    +E  ++L L  + + LVD+ DKF + L D  R    S +  D+E
Sbjct: 409 APRTDFDDEQWD-APDSEPAHTLRLDESHVHLVDSKDKFYAMLSDLCR---QSMIAFDSE 464

Query: 114 WKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPC-YAQLCHDLELIVFANDDLLKIG 172
           WKP   G +   ++L+Q+AT D VY++D++     P  +A L  +    VF  DD+LK+ 
Sbjct: 465 WKPTFGGAN--EVSLIQLATWDDVYMIDVMVSQLEPLDWAALAKN----VFNRDDVLKLS 518

Query: 173 FNLMPDVSIIKTSLPFSEC--SSYNKTSYLDLQLLWSKLVAETTLQLPY 219
           F    D+S+ + +LP      SS + ++ LDLQLLW  +    + + PY
Sbjct: 519 FAPSTDISMFQKALPSFNVMYSSQSTSAILDLQLLWRHVERFDSFRFPY 567

Aedes aegypti (taxid: 7159)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q9VIF1|MUT7_DROME Probable exonuclease mut-7 homolog OS=Drosophila melanogaster GN=CG9247 PE=1 SV=1 Back     alignment and function description
>sp|Q8N9H8|MUT7_HUMAN Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
307197463 1058 Probable exonuclease mut-7-like protein 0.963 0.200 0.343 2e-25
307176637 1053 Probable exonuclease mut-7-like protein 0.972 0.203 0.333 4e-24
380016821 938 PREDICTED: LOW QUALITY PROTEIN: probable 0.972 0.228 0.342 3e-23
332030729 955 Putative exonuclease mut-7-like protein 0.745 0.171 0.397 1e-22
328776161 954 PREDICTED: probable exonuclease mut-7 ho 0.972 0.224 0.337 2e-22
345496472 978 PREDICTED: probable exonuclease mut-7 ho 0.904 0.203 0.337 4e-21
157110292 719 hypothetical protein AaeL_AAEL005527 [Ae 0.95 0.290 0.323 3e-19
328719650 608 PREDICTED: probable exonuclease mut-7 ho 0.977 0.353 0.289 8e-19
170051623 925 conserved hypothetical protein [Culex qu 0.95 0.225 0.316 8e-19
270003369 1249 hypothetical protein TcasGA2_TC002596 [T 0.8 0.140 0.338 2e-17
>gi|307197463|gb|EFN78697.1| Probable exonuclease mut-7-like protein [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 18/230 (7%)

Query: 1   MALDIVKDNPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEEESEQDV 60
           M  + V ++P LQ  L+ + V   D KE  YW ++FK+  N   + +    AEE+ +QD 
Sbjct: 309 MVREAVGNDPTLQANLLSMLVNVNDEKEGLYWAREFKIPKNQWPWHIVH--AEEQEDQDG 366

Query: 61  DNGWDVCKPAEE----------YYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGL 110
           +N  +    + E          YY LTLP + I ++D    F   L +   L   + +G+
Sbjct: 367 ENISEGASASSEKSWLSEDHVNYYVLTLPRDRIKVIDNRRLFEEFLDN--GLKGINMVGI 424

Query: 111 DTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLK 170
           D+EWKP+        LAL+Q+AT + VYILD+ITL++L     L  +L L +F N D++K
Sbjct: 425 DSEWKPSFVTKQSE-LALIQLATNENVYILDVITLNEL---HDLWSELGLTLFGNQDIIK 480

Query: 171 IGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVAETTLQLPYK 220
           IGF +  D+++I+ +LP       +   YLDL  LW KLV +     PY+
Sbjct: 481 IGFGIAHDMTVIRKNLPALSSIKTHGQGYLDLMHLWDKLVDDCNFVFPYQ 530

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307176637|gb|EFN66105.1| Probable exonuclease mut-7-like protein [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380016821|ref|XP_003692371.1| PREDICTED: LOW QUALITY PROTEIN: probable exonuclease mut-7 homolog [Apis florea] Back     alignment and taxonomy information
>gi|332030729|gb|EGI70405.1| Putative exonuclease mut-7-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328776161|ref|XP_391887.3| PREDICTED: probable exonuclease mut-7 homolog [Apis mellifera] Back     alignment and taxonomy information
>gi|345496472|ref|XP_001601894.2| PREDICTED: probable exonuclease mut-7 homolog [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|157110292|ref|XP_001651037.1| hypothetical protein AaeL_AAEL005527 [Aedes aegypti] gi|122068562|sp|Q179T2.1|MUT7_AEDAE RecName: Full=Probable exonuclease mut-7 homolog; AltName: Full=Exonuclease 3'-5' domain-containing protein 3 homolog gi|108878761|gb|EAT42986.1| AAEL005527-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|328719650|ref|XP_003246819.1| PREDICTED: probable exonuclease mut-7 homolog [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|170051623|ref|XP_001861848.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872804|gb|EDS36187.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|270003369|gb|EEZ99816.1| hypothetical protein TcasGA2_TC002596 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
FB|FBgn0032924625 Nbr "Nibbler" [Drosophila mela 0.913 0.321 0.260 8.2e-15
ZFIN|ZDB-GENE-091204-349 861 exd3 "exonuclease 3'-5' domain 0.909 0.232 0.252 2.6e-13
UNIPROTKB|E1BWV5 725 EXD3 "Uncharacterized protein" 0.904 0.274 0.255 1.9e-12
UNIPROTKB|Q8N9H8 876 EXD3 "Probable exonuclease mut 0.818 0.205 0.259 1.3e-10
TAIR|locus:2152871 505 AT5G24340 [Arabidopsis thalian 0.540 0.235 0.287 8.3e-05
UNIPROTKB|G3X7J6 724 G3X7J6 "Uncharacterized protei 0.518 0.157 0.258 0.0003
FB|FBgn0032924 Nbr "Nibbler" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 198 (74.8 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 57/219 (26%), Positives = 110/219 (50%)

Query:     9 NPELQKELIDLCVQYYDCKEAYYWCQKFKLNPNCVGFDLRDKIAEEESEQDVDNGWDV-- 66
             N EL+ + +          EA YW  +F ++P     ++  ++++  + +   +GW+   
Sbjct:   331 NHELRTDFVKYLASAGAHSEAIYWYTEFNIDPKDCPLEIETQVSQNGAGKA--SGWESPG 388

Query:    67 ---CKPA--EEYYSLTLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGG 121
                C  +  + Y ++ LP   +I+V+ AD+F   L     L     + LD+EW  ++ G 
Sbjct:   389 KERCPSSRCDMYLTMDLPDECLIIVNKADEFDRMLY---HLQQECVIYLDSEWMQSVCGD 445

Query:   122 SPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSI 181
             +   L +LQIAT   VY++D +    L   ++    L   +F N ++ K+GF+++ D+S+
Sbjct:   446 NQ--LCVLQIATGHNVYLIDCLARESLR--SEHWRLLGANIFNNVNIRKVGFSMVSDLSV 501

Query:   182 IKTSLPFSECSSYNKTSYLDLQLLWSKLVAETT-LQLPY 219
             ++ SLP  +        YLDL+ LW +L  +   ++LP+
Sbjct:   502 LQRSLPL-QLRLQMPHHYLDLRNLWLELKKQRFGVELPF 539
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0044748 "3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing" evidence=IMP
GO:0044747 "mature miRNA 3'-end processing" evidence=IMP
GO:0030529 "ribonucleoprotein complex" evidence=IDA
ZFIN|ZDB-GENE-091204-349 exd3 "exonuclease 3'-5' domain containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWV5 EXD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N9H8 EXD3 "Probable exonuclease mut-7 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2152871 AT5G24340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7J6 G3X7J6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
cd06146193 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease d 6e-20
cd06141170 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o 1e-11
cd06142178 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domai 0.001
>gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information 
 Score = 83.1 bits (206), Expect = 6e-20
 Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 3/129 (2%)

Query: 83  IILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDI 142
           I +VD+ ++  + L   + L+    +G+D+EWKP+  G S P +A+LQ+AT D V++LD+
Sbjct: 1   IHIVDSEEELEALLLALS-LEAGRVVGIDSEWKPSFLGDSDPRVAILQLATEDEVFLLDL 59

Query: 143 ITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDL 202
           + L  L         L   +F + D+LK+GF    D+  +  S P  +C      + LDL
Sbjct: 60  LALENL-ESEDWDR-LLKRLFEDPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDL 117

Query: 203 QLLWSKLVA 211
           Q L  +L  
Sbjct: 118 QNLAKELQK 126

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Length = 193
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>gnl|CDD|176654 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 220
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 99.93
KOG2207|consensus617 99.93
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 99.84
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 99.84
PRK10829 373 ribonuclease D; Provisional 99.78
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 99.74
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 99.73
TIGR01388 367 rnd ribonuclease D. This model describes ribonucle 99.73
COG0349 361 Rnd Ribonuclease D [Translation, ribosomal structu 99.49
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 99.19
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 99.13
KOG2206|consensus 687 99.11
cd06147192 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y 98.96
cd09018150 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease 98.8
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 98.77
PRK05755 880 DNA polymerase I; Provisional 98.61
KOG4373|consensus319 98.02
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 97.48
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 97.45
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 96.9
PRK14975 553 bifunctional 3'-5' exonuclease/DNA polymerase; Pro 96.87
KOG2405|consensus 458 96.36
KOG2405|consensus 458 91.79
KOG2248|consensus380 90.05
TIGR00593 887 pola DNA polymerase I. This family is based on the 89.54
PRK06310 250 DNA polymerase III subunit epsilon; Validated 88.94
cd06128151 DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam 88.38
KOG2249|consensus280 88.06
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 85.78
PRK07942232 DNA polymerase III subunit epsilon; Provisional 85.02
COG0749 593 PolA DNA polymerase I - 3'-5' exonuclease and poly 83.94
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 83.17
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information 
Probab=99.93  E-value=3.2e-25  Score=183.41  Aligned_cols=126  Identities=33%  Similarity=0.590  Sum_probs=108.0

Q ss_pred             EEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhhHHHHHhc
Q psy12566         83 IILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCHDLELIV  162 (220)
Q Consensus        83 I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~~~~l~~l  162 (220)
                      |++|+|++++++++..+ .+...++||||+||.|.+..+..+++|||||||.+.|||||+..++..+  .+.+.++|+++
T Consensus         1 ~~~i~~~~el~~~~~~~-~l~~~~vig~D~Ew~~~~~~~~~~~v~LiQiat~~~~~lid~~~~~~~~--~~~~~~~L~~l   77 (193)
T cd06146           1 IHIVDSEEELEALLLAL-SLEAGRVVGIDSEWKPSFLGDSDPRVAILQLATEDEVFLLDLLALENLE--SEDWDRLLKRL   77 (193)
T ss_pred             CeEecCHHHHHHHHHHH-hhccCCEEEEECccCCCccCCCCCCceEEEEecCCCEEEEEchhccccc--hHHHHHHHHHH
Confidence            68999999999999885 2688999999999999986556899999999999999999999875322  24456689999


Q ss_pred             ccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566        163 FANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA  211 (220)
Q Consensus       163 l~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~  211 (220)
                      |+||+|+|||||+++|++.|++.|+...+....++|++||+.+++.+..
T Consensus        78 l~d~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a~~l~~  126 (193)
T cd06146          78 FEDPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQK  126 (193)
T ss_pred             hCCCCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHHHHHhh
Confidence            9999999999999999999999999843322358999999999998875

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
>KOG2207|consensus Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>KOG2206|consensus Back     alignment and domain information
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>KOG4373|consensus Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional Back     alignment and domain information
>KOG2405|consensus Back     alignment and domain information
>KOG2405|consensus Back     alignment and domain information
>KOG2248|consensus Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases Back     alignment and domain information
>KOG2249|consensus Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 1e-16
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 2e-06
2hbj_A 410 Exosome complex exonuclease RRP6; RNA metabolism, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
3saf_A 428 Exosome component 10; exoribonuclease, RNA exosome 1e-04
1yt3_A 375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 6e-04
3cym_A 440 Uncharacterized protein BAD_0989; structural genom 9e-04
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 Back     alignment and structure
 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 80  PNSIILVDTADKFASALQDF-ARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRD-RV 137
           P SI+    A   +   +D   RL     +G D EW P    G    +A++Q+   + + 
Sbjct: 14  PGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKC 73

Query: 138 YILDIITLSKLPCYAQLCHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKT 197
           Y+  I ++S  P    L       +  N  + K G  +  D   +               
Sbjct: 74  YLFHISSMSVFP--QGLKM-----LLENKSIKKAGVGIEGDQWKLLRDFDVKLE------ 120

Query: 198 SYLDLQLLWSKLV 210
           S+++L  + ++ +
Sbjct: 121 SFVELTDVANEKL 133
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Length = 410 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Length = 428 Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Length = 375 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 440 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 99.86
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 99.77
3saf_A 428 Exosome component 10; exoribonuclease, RNA exosome 99.7
2hbj_A 410 Exosome complex exonuclease RRP6; RNA metabolism, 99.64
1yt3_A 375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 99.59
3cym_A 440 Uncharacterized protein BAD_0989; structural genom 99.2
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 98.61
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 97.72
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 97.63
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 96.64
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 93.58
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 87.18
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
Probab=99.86  E-value=9.1e-22  Score=163.19  Aligned_cols=116  Identities=15%  Similarity=0.205  Sum_probs=91.6

Q ss_pred             EEEeCHHHHHHHHHHHh---ccCCCCeEEEeeeeccCCC----CCCC--CCceEEEeEeCCeEEEEEccCCCCCCchhhh
Q psy12566         84 ILVDTADKFASALQDFA---RLDHNSHLGLDTEWKPNLS----GGSP--PTLALLQIATRDRVYILDIITLSKLPCYAQL  154 (220)
Q Consensus        84 ~~Vdt~~~l~~~~~~l~---~l~~~~~VG~D~Ew~p~~~----~~~~--~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~  154 (220)
                      .+|.|.+++..++..+.   ......+||||+||+|.|.    ++..  +++||||||++++|+|||+  ...+|   ..
T Consensus        22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l--~~~~~---~~   96 (206)
T 1vk0_A           22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRL--PKPFH---DN   96 (206)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEEC--CSSCC---GG
T ss_pred             EEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEec--cccCC---cc
Confidence            56667666777777632   1266789999999999871    2233  5999999999999999999  24455   33


Q ss_pred             hHHHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566        155 CHDLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA  211 (220)
Q Consensus       155 ~~~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~  211 (220)
                      +.. |..+|+||+|+||||++++|+++|++.|+.      .+++++||+.++....+
T Consensus        97 L~~-L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~------~~~~~~Dl~~la~~~lg  146 (206)
T 1vk0_A           97 LKD-LYRFFASKFVTFVGVQIEEDLDLLRENHGL------VIRNAINVGKLAAEARG  146 (206)
T ss_dssp             GHH-HHHHHTCSSSEEEESSCHHHHHHHHHHHCC------CCSSEEEHHHHHHHHHT
T ss_pred             HHH-HHHHhcCCCceEEEeccHHHHHHHHHhcCC------CcCCeeeHHHHHHHHcC
Confidence            443 679999999999999999999999999998      89999999988765533
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 220
d1vk0a_206 c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal 2e-08
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 19/124 (15%)

Query: 82  SIILVDTADKFASALQDF---ARLDHNSHLGLDTEWKPNLSGGSPPT------LALLQIA 132
             I V ++   +  L      + L+ N  +  D  W          T      L+ ++++
Sbjct: 20  KTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLS 79

Query: 133 TRDRVYILDIITLSKLPCYAQLCHDLELI--VFANDDLLKIGFNLMPDVSIIKTSLPFSE 190
           TR+    L +              +L+ +   FA+  +  +G  +  D+ +++ +     
Sbjct: 80  TRNLCLFLRLPKP--------FHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVI 131

Query: 191 CSSY 194
            ++ 
Sbjct: 132 RNAI 135

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 99.84
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 99.83
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 99.81
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 99.24
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 98.41
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exosome complex exonuclease RRP6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4e-21  Score=164.81  Aligned_cols=117  Identities=22%  Similarity=0.295  Sum_probs=103.9

Q ss_pred             ccCCCcEEEEeCHHHHHHHHHHHhccCCCCeEEEeeeeccCCCCCCCCCceEEEeEeCCeEEEEEccCCCCCCchhhhhH
Q psy12566         77 TLPPNSIILVDTADKFASALQDFARLDHNSHLGLDTEWKPNLSGGSPPTLALLQIATRDRVYILDIITLSKLPCYAQLCH  156 (220)
Q Consensus        77 ~l~~~~I~~Vdt~~~l~~~~~~l~~l~~~~~VG~D~Ew~p~~~~~~~~~vaLlQiat~~~v~LiD~~~l~~~~~~~~~~~  156 (220)
                      |++..+.+||+|.++++++++.   |+.++.||||+||...  .+..+++|||||||++.+||||+.+++...   .   
T Consensus        79 ~~~~t~~~~Vdt~e~L~~li~~---L~~~~~iavDtE~~~~--~s~~g~l~LiQiat~~~~~iiD~~~l~~~l---~---  147 (292)
T d2hbka2          79 SWDDSVPIWVDTSTELESMLED---LKNTKEIAVDLEHHDY--RSYYGIVCLMQISTRERDYLVDTLKLRENL---H---  147 (292)
T ss_dssp             CGGGCCCEEECSHHHHHHHHHH---HTTCSEEEEEEEEECS--SSSSCEEEEEEEECSSCEEEEETTTTTTTG---G---
T ss_pred             CCCCCCcEEeCCHHHHHHHHHH---HhcCCcEEEEEEeCcC--cccCCeEEEEEEEeCCccEEEEecccccch---H---
Confidence            4556778999999999999999   9999999999999875  357899999999999999999999885221   1   


Q ss_pred             HHHHhcccCCCeEEEEEcchhhHHHHHhhCCCCccccCCcCceeeHHHHHHHhhh
Q psy12566        157 DLELIVFANDDLLKIGFNLMPDVSIIKTSLPFSECSSYNKTSYLDLQLLWSKLVA  211 (220)
Q Consensus       157 ~~l~~ll~~~~IlKvG~~~~~Dl~~L~~~~~~~~~~~~~~~~~~DL~~l~~~l~~  211 (220)
                       .|+.+|+|++|+|||||++.|+..|++.++.      .+.|++|++.+++.+..
T Consensus       148 -~L~~ll~d~~I~KV~H~~~~Di~~L~~~~g~------~~~n~fDT~~aa~~l~~  195 (292)
T d2hbka2         148 -ILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL------YVVGLFDTYHASKAIGL  195 (292)
T ss_dssp             -GGHHHHTCTTSEEEESSCHHHHHHHHHHHCC------CCSSEEEHHHHHHHHTC
T ss_pred             -HHHHHHhccCeEEEeechHhhhhhhhhcccc------cccchHHHHHHHHHhCc
Confidence             3789999999999999999999999999998      89999999999888753
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure