Psyllid ID: psy12573

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHccccEEEEcccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEcccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccccHHHHHHHHHHcccccHHHHHHccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHEEEEEEEEccccEEEEEcccccccHHHHHHHHcccHHHHHccccccccccHHHHHHHHHcccccccccEEEEEEccccccEEEEEcccEEEEEEcccHHHHccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcEEcccHHHHHHHccEEEEccccccccccEEEEEcccccccHHHHHccHHHHHHHHHccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHc
Coil and Loop (DISEMBL)
miqdesvplnYYAAIHAVQvsipdnciivgegantmDIGRSLLLnnlprhrldagtfgtmGVGLGFALAAALYcnhyapgkrvvcvqgdsafgfsgmeletlavdkegrpkLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAttaskfstpgynILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAttaskfstpgarhgifcstpavaltrkvplgVVRSMTItgipisaqdaynAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY
Flexible Loop (DISEMBL)
MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELEtlavdkegrpKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATtaskfstpgyNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAskfstpgarhGIFCSTPAVALTRKVPLGVVRSMTITGipisaqdayNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY
Low Complexity Region (SEG)
MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMgvglgfalaaalYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY
Disordered region (IsUnstruct)
*******PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS*********KVLTSAILENSRSVLTLGKQFLYQQM********
Disordered Region (DISOPRED)
****ESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRL*AGTFGTMGVGLGFALAAAL**NHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNI****
Disordered Region (DISEMBL)
MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS********KVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY
Disordered Region (DISPRO)
*****SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q8CHM7	581	2-hydroxyacyl-CoA lyase 1	yes	N/A	0.311	0.168	0.673	4e-36
Q9D7J9	300	Enoyl-CoA hydratase domai	yes	N/A	0.457	0.48	0.524	1e-35
Q9UJ83	578	2-hydroxyacyl-CoA lyase 1	yes	N/A	0.314	0.171	0.636	7e-35
Q9QXE0	581	2-hydroxyacyl-CoA lyase 1	no	N/A	0.314	0.170	0.656	1e-34
Q3MIE0	300	Enoyl-CoA hydratase domai	no	N/A	0.466	0.49	0.5	1e-34
Q96DC8	303	Enoyl-CoA hydratase domai	no	N/A	0.457	0.475	0.489	5e-33
A0PJR5	289	Enoyl-CoA hydratase domai	no	N/A	0.447	0.487	0.5	7e-33
A9JS71	294	Enoyl-CoA hydratase domai	N/A	N/A	0.457	0.489	0.482	3e-31
Q9LF46	572	2-hydroxyacyl-CoA lyase O	yes	N/A	0.292	0.160	0.51	1e-20
Q54DA9	580	Probable 2-hydroxyacyl-Co	yes	N/A	0.279	0.151	0.531	6e-20

>sp|Q8CHM7|HACL1_RAT 2-hydroxyacyl-CoA lyase 1 OS=Rattus norvegicus GN=Hacl1 PE=1 SV=1

 Score =  152 bits (384), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 82/98 (83%)

Query: 5   ESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGL 64
           +S+P+NYY   + VQ  +P NC IV EGANTMDIGR++L N LPRHRLDAG+FGTMGVGL
Sbjct: 374 KSLPMNYYTVFYHVQEQLPRNCFIVSEGANTMDIGRTVLQNYLPRHRLDAGSFGTMGVGL 433

Query: 65  GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           GFA+AAA+     +PG+RV+CV+GDSAFGFSGME+ET+
Sbjct: 434 GFAIAAAVVAKERSPGQRVICVEGDSAFGFSGMEVETI 471

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.
Rattus norvegicus (taxid: 10116)
EC: 4EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q9D7J9|ECHD3_MOUSE Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Mus musculus GN=Echdc3 PE=2 SV=1

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 1/145 (0%)

Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
           +  TCS++M+ I  HPVPILA+++G+A AAGCQLVA+CD+A+A+  S F+TPG   G+FC
Sbjct: 124 VFQTCSEVMMLIRNHPVPILAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFC 183

Query: 231 STPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILE 290
           STPAVAL R VP  V   M  TG PISAQ+A   GLI++VV   E+LE+ET  +   I  
Sbjct: 184 STPAVALGRAVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEAETMRIAKKISS 242

Query: 291 NSRSVLTLGKQFLYQQMSLNIEEAY 315
            SRSV+ LGK   Y+Q+  ++  AY
Sbjct: 243 LSRSVVALGKATFYKQLPQDLRTAY 267

Mus musculus (taxid: 10090)

>sp|Q9UJ83|HACL1_HUMAN 2-hydroxyacyl-CoA lyase 1 OS=Homo sapiens GN=HACL1 PE=1 SV=2

 Score =  148 bits (373), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 81/99 (81%)

Query: 4   DESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
            +S+P+NYY   + VQ  +P +C +V EGANTMDIGR++L N LPRHRLDAGTFGTMGVG
Sbjct: 370 KKSLPMNYYTVFYHVQEQLPRDCFVVSEGANTMDIGRTVLQNYLPRHRLDAGTFGTMGVG 429

Query: 64  LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           LGFA+AAA+     +PG+ ++CV+GDSAFGFSGME+ET+
Sbjct: 430 LGFAIAAAVVAKDRSPGQWIICVEGDSAFGFSGMEVETI 468

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9QXE0|HACL1_MOUSE 2-hydroxyacyl-CoA lyase 1 OS=Mus musculus GN=Hacl1 PE=1 SV=2

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 81/99 (81%)

Query: 4   DESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
            +S+P+NYY   + VQ  +P +  IV EGANTMDIGR++L N LPRHRLDAG+FGTMGVG
Sbjct: 373 QKSLPMNYYTVFYHVQEQLPRDSFIVSEGANTMDIGRTMLQNCLPRHRLDAGSFGTMGVG 432

Query: 64  LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           LGFA+AAAL     +PG+RV+CV+GDSAFGFSGME+ET+
Sbjct: 433 LGFAIAAALVAKDRSPGQRVICVEGDSAFGFSGMEVETI 471

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q3MIE0|ECHD3_RAT Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Rattus norvegicus GN=Echdc3 PE=2 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 100/148 (67%), Gaps = 1/148 (0%)

Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           +  +  TCS++M+ I  HPVPI+A+++G+A AAGCQLVA+CD+A+A+  S F+TPG   G
Sbjct: 121 HTEVFQTCSEVMMLIRNHPVPIVAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVG 180

Query: 228 IFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
           +FCSTPAVAL R VP  V   M  TG PISAQ+A   GLI++VV   E+LE E   +   
Sbjct: 181 LFCSTPAVALGRAVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEEEATRIAKK 239

Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
           I   SRSV+ LGK   Y+Q+  ++  AY
Sbjct: 240 IASLSRSVVALGKATFYKQLPQDLSTAY 267

Rattus norvegicus (taxid: 10116)

>sp|Q96DC8|ECHD3_HUMAN Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Homo sapiens GN=ECHDC3 PE=1 SV=2

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 98/145 (67%), Gaps = 1/145 (0%)

Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
           +  TCS +M+ I  HPVP++A+++G+AAAAGCQLVA+CD+A+A+  S F+TPG   G+FC
Sbjct: 124 VFQTCSKVMMHIRNHPVPVIAMVNGLAAAAGCQLVASCDIAVASDKSSFATPGVNVGLFC 183

Query: 231 STPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILE 290
           STP VAL R VP  V   M  TG PISAQ+A   GL+++VV    EL+ ET  +   I  
Sbjct: 184 STPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVV-PEAELQEETMRIARKIAS 242

Query: 291 NSRSVLTLGKQFLYQQMSLNIEEAY 315
            SR V++LGK   Y+Q+  ++  AY
Sbjct: 243 LSRPVVSLGKATFYKQLPQDLGTAY 267

Homo sapiens (taxid: 9606)

>sp|A0PJR5|ECHD3_DANRE Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Danio rerio GN=echdc3 PE=2 SV=2

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 71/142 (50%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 174 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP 233
           +CS+LM+ I   PVP++A+++GVA AAGCQLVA+CD+A+A+  S F+TPG   G+FCSTP
Sbjct: 110 SCSELMMLIQDLPVPVIAMVNGVATAAGCQLVASCDVAVASEKSTFATPGVNVGLFCSTP 169

Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
           AVA+ R VP  +   M +TG P+SAQ A   GL++  V S E LE ET  +   + E+SR
Sbjct: 170 AVAIGRTVPRKIAMQMLLTGRPLSAQQALQHGLLS-AVFSEERLEDETLAIARRVCESSR 228

Query: 294 SVLTLGKQFLYQQMSLNIEEAY 315
            V++LGKQ    QMS + + AY
Sbjct: 229 PVVSLGKQIFNTQMSQSRDAAY 250

Danio rerio (taxid: 7955)

>sp|A9JS71|ECHD3_XENLA Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Xenopus laevis GN=echdc3 PE=2 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 97/145 (66%), Gaps = 1/145 (0%)

Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
           + +TC+ LM      PVP++A ++G+A AAGCQLVA+CD+A+A+  S+F+TPG   G+FC
Sbjct: 117 VFNTCAKLMTLFQTLPVPVIAEVNGLATAAGCQLVASCDIAVASDKSRFATPGVNVGLFC 176

Query: 231 STPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILE 290
           STP VAL R VP  V   M  TG PISA DA   GL+++VV   E L+SET  +   I +
Sbjct: 177 STPGVALGRAVPRKVALEMLFTGEPISAHDALLHGLVSKVVPE-ENLKSETNRIALKICQ 235

Query: 291 NSRSVLTLGKQFLYQQMSLNIEEAY 315
            S SV+ LGK   Y+QM+ ++ +AY
Sbjct: 236 TSHSVVALGKSTFYRQMAKSLTDAY 260

Xenopus laevis (taxid: 8355)

>sp|Q9LF46|HACL_ARATH 2-hydroxyacyl-CoA lyase OS=Arabidopsis thaliana GN=HACL PE=2 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/100 (51%), Positives = 70/100 (70%), Gaps = 8/100 (8%)

Query: 7   VPLNYYAAIHAVQVSI----PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
           VP N+   +  ++ +I      + ++V EGANTMD+GRS+L+   PR RLDAGT+GTMGV
Sbjct: 375 VPFNFLTPMRIIRDAILAVEGPSPVVVSEGANTMDVGRSVLVQKEPRTRLDAGTWGTMGV 434

Query: 63  GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           GLG+ +AAA+     +P + VV V+GDS FGFS ME+ETL
Sbjct: 435 GLGYCIAAAV----ASPDRLVVAVEGDSGFGFSAMEVETL 470

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q54DA9|HACL1_DICDI Probable 2-hydroxyacyl-CoA lyase 1 OS=Dictyostelium discoideum GN=hacl1 PE=3 SV=1

 Score = 98.6 bits (244), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 65/94 (69%), Gaps = 6/94 (6%)

Query: 9   LNYYAAIHAVQVS--IPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 66
           L Y+   +A++V     ++ I V EGANTMDIGR  +   LPR RLDAGT  TMGVG+G+
Sbjct: 385 LTYHKVFNALRVGGLFQEDTIFVNEGANTMDIGRLCIPQTLPRSRLDAGTLATMGVGVGY 444

Query: 67  ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE 100
           ++AA + C    P + VVC+QGDSAFGFS ME+E
Sbjct: 445 SVAAQI-C---FPDRSVVCIQGDSAFGFSAMEME 474

Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
193586967	571	PREDICTED: 2-hydroxyacyl-CoA lyase 1-lik	0.323	0.178	0.735	2e-40
91088717	568	PREDICTED: similar to 2-hydroxyphytanoyl	0.323	0.179	0.735	3e-39
332028930	312	2-hydroxyacyl-CoA lyase 1 [Acromyrmex ec	0.307	0.310	0.762	5e-39
114051914	593	2-hydroxyphytanoyl-CoA lyase [Bombyx mor	0.307	0.163	0.752	4e-38
307171064	566	2-hydroxyacyl-CoA lyase 1 [Camponotus fl	0.323	0.180	0.725	4e-38
357618628	568	2-hydroxyphytanoyl-CoA lyase [Danaus ple	0.314	0.174	0.737	5e-38
307196382	566	2-hydroxyacyl-CoA lyase 1 [Harpegnathos	0.323	0.180	0.725	6e-38
156545467	568	PREDICTED: 2-hydroxyacyl-CoA lyase 1-lik	0.323	0.179	0.715	1e-37
345482048	543	PREDICTED: 2-hydroxyacyl-CoA lyase 1-lik	0.323	0.187	0.715	1e-37
383849866	566	PREDICTED: 2-hydroxyacyl-CoA lyase 1-lik	0.314	0.174	0.737	1e-37

>gi|193586967|ref|XP_001952174.1| PREDICTED: 2-hydroxyacyl-CoA lyase 1-like [Acyrthosiphon pisum]

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 89/102 (87%)

Query: 1   MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTM 60
           M++D S+PLNYY     V  +IP +C+IV EGANTMDIGR++LLNNLPRHRLDAGTFGTM
Sbjct: 360 MMKDTSIPLNYYTVFRHVSDNIPKDCMIVSEGANTMDIGRAVLLNNLPRHRLDAGTFGTM 419

Query: 61  GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           GVGLGFA+AAAL+C  Y PGKRV+CV+GDSAFGFSGME+ET+
Sbjct: 420 GVGLGFAIAAALWCQKYEPGKRVLCVEGDSAFGFSGMEVETM 461

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088717|ref|XP_975143.1| PREDICTED: similar to 2-hydroxyphytanoyl-coa lyase [Tribolium castaneum] gi|270011662|gb|EFA08110.1| hypothetical protein TcasGA2_TC005714 [Tribolium castaneum]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 86/102 (84%)

Query: 1   MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTM 60
           M  D S PLNYYA  H +Q  +P N IIV EGANTMDIGR++L+N LPRHRLDAGTFGTM
Sbjct: 357 MTLDVSEPLNYYAVFHHLQEVLPQNPIIVSEGANTMDIGRAVLMNGLPRHRLDAGTFGTM 416

Query: 61  GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           GVGLGFA+AAALYC H+ P KRV+CV+GDSAFGFSGME+ET+
Sbjct: 417 GVGLGFAIAAALYCRHFEPKKRVICVEGDSAFGFSGMEIETM 458

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028930|gb|EGI68948.1| 2-hydroxyacyl-CoA lyase 1 [Acromyrmex echinatior]

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/97 (76%), Positives = 83/97 (85%)

Query: 6   SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLG 65
           SVPLNYY     +Q  IP +CII  EGANTMDIGR++LLNNLPRHRLDAGTFGTMGVGLG
Sbjct: 106 SVPLNYYTVFKHIQDVIPKDCIICSEGANTMDIGRTILLNNLPRHRLDAGTFGTMGVGLG 165

Query: 66  FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           FA+AAALYC   AP KRV+CV+GDSAFGFSGME+ET+
Sbjct: 166 FAIAAALYCKDNAPKKRVICVEGDSAFGFSGMEIETM 202

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051914|ref|NP_001040193.1| 2-hydroxyphytanoyl-CoA lyase [Bombyx mori] gi|87248339|gb|ABD36222.1| 2-hydroxyphytanoyl-CoA lyase [Bombyx mori]

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 82/97 (84%)

Query: 6   SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLG 65
           +VPLNYY     VQ  IP + IIV EGANTMDIGR LLLNN PRHRLDAGTFGTMGVG G
Sbjct: 387 AVPLNYYTVFKTVQQGIPKDSIIVSEGANTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPG 446

Query: 66  FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           FA+AAA++C  YAPGKRV+CV+GDSAFGFSGME+ET+
Sbjct: 447 FAIAAAMWCRDYAPGKRVICVEGDSAFGFSGMEIETM 483

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171064|gb|EFN63107.1| 2-hydroxyacyl-CoA lyase 1 [Camponotus floridanus]

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 85/102 (83%)

Query: 1   MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTM 60
           M  D SVPLNYY     +Q  IP++CII  EGANTMDIGR++LLN+LPRHRLDAGTFGTM
Sbjct: 355 MSLDTSVPLNYYTVFKHIQDVIPNDCIICSEGANTMDIGRTILLNDLPRHRLDAGTFGTM 414

Query: 61  GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           GVGLGF +AAALYC   AP KRV+CV+GDSAFGFSGME+ET+
Sbjct: 415 GVGLGFGIAAALYCKDNAPKKRVICVEGDSAFGFSGMEIETM 456

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357618628|gb|EHJ71538.1| 2-hydroxyphytanoyl-CoA lyase [Danaus plexippus]

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 85/99 (85%)

Query: 4   DESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
           D+S+PLNYYA   AVQ +IP + IIV EGANTMDIGR +LLNN PRHRLDAGTFGTMGVG
Sbjct: 360 DKSLPLNYYAVFKAVQENIPKDSIIVSEGANTMDIGRGILLNNKPRHRLDAGTFGTMGVG 419

Query: 64  LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
            GFA+AAA +C  +AP KRV+CV+GDSAFGFSGME+ET+
Sbjct: 420 PGFAVAAAQWCRDHAPDKRVICVEGDSAFGFSGMEIETM 458

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196382|gb|EFN77971.1| 2-hydroxyacyl-CoA lyase 1 [Harpegnathos saltator]

 Score =  164 bits (414), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 85/102 (83%)

Query: 1   MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTM 60
           M  D +VPLNYY     +Q  IP +CII  EGANTMDIGR++LLN+LPRHRLDAGTFGTM
Sbjct: 355 MSLDTNVPLNYYTVFTHIQDVIPKDCIICSEGANTMDIGRTILLNDLPRHRLDAGTFGTM 414

Query: 61  GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           GVGLGFA+AAALYC   AP KRV+CV+GDSAFGFSGME+ET+
Sbjct: 415 GVGLGFAIAAALYCKERAPRKRVICVEGDSAFGFSGMEIETM 456

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545467|ref|XP_001606876.1| PREDICTED: 2-hydroxyacyl-CoA lyase 1-like isoform 1 [Nasonia vitripennis]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query: 1   MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTM 60
           M  D   PLNYYA    +Q  +P+NCII  EGANTMDIGR+++LNNLPRHRLDAGTFGTM
Sbjct: 357 MSLDMREPLNYYAVFKVIQSLLPENCIICSEGANTMDIGRTMILNNLPRHRLDAGTFGTM 416

Query: 61  GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           GVGLGFA+AAALYC    P KRV+C++GDSAFGFSGMELET+
Sbjct: 417 GVGLGFAVAAALYCKDSHPEKRVICIEGDSAFGFSGMELETM 458

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482048|ref|XP_003424517.1| PREDICTED: 2-hydroxyacyl-CoA lyase 1-like isoform 2 [Nasonia vitripennis]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 84/102 (82%)

Query: 1   MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTM 60
           M  D   PLNYYA    +Q  +P+NCII  EGANTMDIGR+++LNNLPRHRLDAGTFGTM
Sbjct: 332 MSLDMREPLNYYAVFKVIQSLLPENCIICSEGANTMDIGRTMILNNLPRHRLDAGTFGTM 391

Query: 61  GVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           GVGLGFA+AAALYC    P KRV+C++GDSAFGFSGMELET+
Sbjct: 392 GVGLGFAVAAALYCKDSHPEKRVICIEGDSAFGFSGMELETM 433

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849866|ref|XP_003700555.1| PREDICTED: 2-hydroxyacyl-CoA lyase 1-like [Megachile rotundata]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 84/99 (84%)

Query: 4   DESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
           D SVPLNYYA    +Q +IP N II  EGANTMDIG+++LLN+ PRHRLDA TFGTMGVG
Sbjct: 358 DVSVPLNYYAVFKEIQETIPPNSIICSEGANTMDIGKTILLNDEPRHRLDAATFGTMGVG 417

Query: 64  LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           LGFA+AAALYC +YAP KRV CV+GDSAFGFSGME+ET+
Sbjct: 418 LGFAIAAALYCKNYAPTKRVFCVEGDSAFGFSGMEIETM 456

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
MGI|MGI:1915106	300	Echdc3 "enoyl Coenzyme A hydra	0.447	0.47	0.535	1.7e-34
UNIPROTKB|E1BLR8	300	ECHDC3 "Uncharacterized protei	0.473	0.496	0.509	2.8e-34
RGD|1589147	300	Echdc3 "enoyl Coenzyme A hydra	0.447	0.47	0.521	1.2e-33
UNIPROTKB|F1PAH9	261	ECHDC3 "Uncharacterized protei	0.476	0.574	0.493	1.5e-33
ZFIN|ZDB-GENE-061201-12	289	zgc:158321 "zgc:158321" [Danio	0.568	0.619	0.434	1.4e-32
UNIPROTKB|Q96DC8	303	ECHDC3 "Enoyl-CoA hydratase do	0.447	0.465	0.5	2.9e-32
UNIPROTKB|F1RUP0	302	ECHDC3 "Uncharacterized protei	0.473	0.493	0.476	3.7e-32
UNIPROTKB|F1P1V5	297	ECHDC3 "Uncharacterized protei	0.444	0.471	0.489	3.7e-32
FB|FBgn0034191	285	CG6984 [Drosophila melanogaste	0.441	0.487	0.457	1.4e-30
FB|FBgn0034488	568	CG11208 [Drosophila melanogast	0.323	0.179	0.598	7.9e-29

MGI|MGI:1915106 Echdc3 "enoyl Coenzyme A hydratase domain containing 3" [Mus musculus (taxid:10090)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 76/142 (53%), Positives = 100/142 (70%)

Query:   174 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP 233
             TCS++M+ I  HPVPILA+++G+A AAGCQLVA+CD+A+A+  S F+TPG   G+FCSTP
Sbjct:   127 TCSEVMMLIRNHPVPILAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTP 186

Query:   234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
             AVAL R VP  V   M  TG PISAQ+A   GLI++VV   E+LE+ET  +   I   SR
Sbjct:   187 AVALGRAVPRKVALEMLFTGEPISAQEALRHGLISKVVPE-EQLEAETMRIAKKISSLSR 245

Query:   294 SVLTLGKQFLYQQMSLNIEEAY 315
             SV+ LGK   Y+Q+  ++  AY
Sbjct:   246 SVVALGKATFYKQLPQDLRTAY 267

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|E1BLR8 ECHDC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 77/151 (50%), Positives = 103/151 (68%)

Query:   166 PGYNILV-STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA 224
             P Y+  V  TCS++M+ I  HPVPI+A+++G+A AAGCQLVA+CD+A+A+  S F+ PG 
Sbjct:   118 PDYHAEVFQTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFAMPGV 177

Query:   225 RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
               G+FCSTPAVAL R VP  V   M  TG PISAQ+A   GL++RVV   E LE ET  +
Sbjct:   178 NIGVFCSTPAVALGRAVPRKVALEMLFTGEPISAQEALLHGLLSRVVPE-ERLEEETMRI 236

Query:   285 TSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
                +   SRSVL+LGK   Y+Q++ ++  AY
Sbjct:   237 ARKVASLSRSVLSLGKAAFYRQLAQDLRTAY 267

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

RGD|1589147 Echdc3 "enoyl Coenzyme A hydratase domain containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 74/142 (52%), Positives = 98/142 (69%)

Query:   174 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP 233
             TCS++M+ I  HPVPI+A+++G+A AAGCQLVA+CD+A+A+  S F+TPG   G+FCSTP
Sbjct:   127 TCSEVMMLIRNHPVPIVAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTP 186

Query:   234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
             AVAL R VP  V   M  TG PISAQ+A   GLI++VV   E+LE E   +   I   SR
Sbjct:   187 AVALGRAVPRKVALEMLFTGEPISAQEALRHGLISKVVPE-EQLEEEATRIAKKIASLSR 245

Query:   294 SVLTLGKQFLYQQMSLNIEEAY 315
             SV+ LGK   Y+Q+  ++  AY
Sbjct:   246 SVVALGKATFYKQLPQDLSTAY 267

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1PAH9 ECHDC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 75/152 (49%), Positives = 104/152 (68%)

Query:   165 TPGYNILV-STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPG 223
             +P Y+  V  TCS++M+ I  HPVPI+A+++G+A AAGCQLVA+CD+A+A+  S F+TPG
Sbjct:    78 SPDYHAEVFQTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPG 137

Query:   224 ARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
                G+FCSTP VAL R VP  V   M  TG PISAQ+A   GL+++VV + E+LE ET  
Sbjct:   138 VNIGLFCSTPGVALGRAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPA-EQLEEETMR 196

Query:   284 LTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
             +   I   SR V++LGK   Y+Q+  ++  AY
Sbjct:   197 IARKIASLSRRVVSLGKAAFYRQLPQDLRTAY 228

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

ZFIN|ZDB-GENE-061201-12 zgc:158321 "zgc:158321" [Danio rerio (taxid:7955)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 80/184 (43%), Positives = 114/184 (61%)

Query:   132 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILA 191
             P L +I  + +A G    +  DL   ++A     P    +  +CS+LM+ I   PVP++A
Sbjct:    72 PELHVI--IISAVGPVFSSGHDLQELSSAEGSDLP--RRVFHSCSELMMLIQDLPVPVIA 127

Query:   192 IISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTI 251
             +++GVA AAGCQLVA+CD+A+A+  S F+TPG   G+FCSTPAVA+ R VP  +   M +
Sbjct:   128 MVNGVATAAGCQLVASCDVAVASEKSTFATPGVNVGLFCSTPAVAIGRTVPRKIAMQMLL 187

Query:   252 TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNI 311
             TG P+SAQ A   GL++ V S  E LE ET  +   + E+SR V++LGKQ    QMS + 
Sbjct:   188 TGRPLSAQQALQHGLLSAVFSE-ERLEDETLAIARRVCESSRPVVSLGKQIFNTQMSQSR 246

Query:   312 EEAY 315
             + AY
Sbjct:   247 DAAY 250

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q96DC8 ECHDC3 "Enoyl-CoA hydratase domain-containing protein 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 71/142 (50%), Positives = 97/142 (68%)

Query:   174 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP 233
             TCS +M+ I  HPVP++A+++G+AAAAGCQLVA+CD+A+A+  S F+TPG   G+FCSTP
Sbjct:   127 TCSKVMMHIRNHPVPVIAMVNGLAAAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTP 186

Query:   234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
              VAL R VP  V   M  TG PISAQ+A   GL+++VV    EL+ ET  +   I   SR
Sbjct:   187 GVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPE-AELQEETMRIARKIASLSR 245

Query:   294 SVLTLGKQFLYQQMSLNIEEAY 315
              V++LGK   Y+Q+  ++  AY
Sbjct:   246 PVVSLGKATFYKQLPQDLGTAY 267

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1RUP0 ECHDC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 72/151 (47%), Positives = 101/151 (66%)

Query:   166 PGYNILV-STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA 224
             P Y+  V   CS++M+ I  HPVPI+A+++G+A AAGCQLVA+CD+A+A+  S F+TPG 
Sbjct:   120 PDYHAEVFRACSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGV 179

Query:   225 RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
               G+FCSTP VA+ R +P  V   M  TG P+SAQ+A   GL++RVV   E LE ET  +
Sbjct:   180 TIGLFCSTPGVAVGRALPRKVALEMLFTGEPMSAQEALLHGLLSRVVPE-ERLEEETMRI 238

Query:   285 TSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
                +   SR VL+LGK   Y+Q++ ++  AY
Sbjct:   239 ARKVASLSRPVLSLGKAAFYRQLAQDLRTAY 269

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1P1V5 ECHDC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 69/141 (48%), Positives = 101/141 (71%)

Query:   175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
             C+++M  I R PVP++A ++G+A AAGCQLVA+CD+A+A+  S+F+TPG   G+FCSTPA
Sbjct:   119 CAEVMTLIQRLPVPVIAKVNGLATAAGCQLVASCDIAVASEKSRFATPGVNIGLFCSTPA 178

Query:   235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
             VAL R +P  V   M  TG P+SA +A   GL+++VV   ++LE ET  ++  I E+S+S
Sbjct:   179 VALGRSLPRKVALEMLFTGEPLSAHEALMHGLVSKVVPE-DKLEEETMRISHKICESSKS 237

Query:   295 VLTLGKQFLYQQMSLNIEEAY 315
             VL LGK   Y+QM+ +++ AY
Sbjct:   238 VLALGKATFYRQMAQDLDTAY 258

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

FB|FBgn0034191 CG6984 [Drosophila melanogaster (taxid:7227)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/140 (45%), Positives = 101/140 (72%)

Query:   176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
             +D++  I R PVP+L  ++G AAAAGCQLV +CD+ + T  SKFSTPGA  G+FCSTP V
Sbjct:   113 TDVINDIQRLPVPVLGKVNGYAAAAGCQLVVSCDMVVCTKNSKFSTPGAGVGVFCSTPGV 172

Query:   236 ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
             A+ R +       M +TG+P++ ++AY +G++T+ V + EEL+ E + +T+AI   SR+V
Sbjct:   173 AVARIMSRPKSAYMLMTGLPVTGEEAYISGMVTKAVPA-EELDKEIEEITNAIKAKSRAV 231

Query:   296 LTLGKQFLYQQMSLNIEEAY 315
             ++LGK+F Y+Q++++  EA+
Sbjct:   232 ISLGKEFYYKQLAMSQAEAF 251

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

FB|FBgn0034488 CG11208 [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 7.9e-29, P = 7.9e-29
 Identities = 61/102 (59%), Positives = 73/102 (71%)

Query:     1 MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTM 60
             M  +   PLNYYA  H ++  +P + IIV EGANTMDIGRS+LLN  PRHRLDAGTFGTM
Sbjct:   357 MSLNTETPLNYYAVFHHLRELLPKDTIIVSEGANTMDIGRSMLLNEQPRHRLDAGTFGTM 416

Query:    61 XXXXXXXXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
                         +C  +APGKRV+CV+GDSAFGFSGME+ET+
Sbjct:   417 GVGPGFAVAAALFCRDFAPGKRVLCVEGDSAFGFSGMEIETM 458

GO:0008949 "oxalyl-CoA decarboxylase activity" evidence=ISS

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0030976 "thiamine pyrophosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D7J9	ECHD3_MOUSE	No assigned EC number	0.5241	0.4571	0.48	yes	N/A
A4YI89	HPCD_METS5	4, ., 2, ., 1, ., 1, 1, 6	0.3080	0.6095	0.7413	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	315
cd02004	172	cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate	3e-47
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	7e-46
PRK09259	569	PRK09259, PRK09259, putative oxalyl-CoA decarboxyl	4e-30
TIGR03254	554	TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase	1e-26
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	7e-23
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	2e-22
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	1e-20
COG0028	550	COG0028, IlvB, Thiamine pyrophosphate-requiring en	1e-17
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	3e-16
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	5e-16
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	7e-16
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	2e-14
cd00568	168	cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP)	8e-14
pfam02775	151	pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en	2e-13
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-12
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	4e-12
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	8e-12
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	1e-10
PRK05858	542	PRK05858, PRK05858, hypothetical protein; Provisio	2e-10
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	1e-09
cd02015	186	cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) fa	2e-09
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	3e-09
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	3e-09
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	5e-09
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	7e-09
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	7e-09
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	8e-09
PRK08617	552	PRK08617, PRK08617, acetolactate synthase; Reviewe	1e-08
cd02010	177	cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) fam	1e-08
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	1e-08
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	2e-08
PRK07525	588	PRK07525, PRK07525, sulfoacetaldehyde acetyltransf	2e-08
PRK08155	564	PRK08155, PRK08155, acetolactate synthase catalyti	2e-08
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	3e-08
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	3e-08
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	3e-08
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	4e-08
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	4e-08
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	6e-08
cd02014	178	cd02014, TPP_POX, Thiamine pyrophosphate (TPP) fam	8e-08
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	1e-07
TIGR02418	539	TIGR02418, acolac_catab, acetolactate synthase, ca	1e-07
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	2e-07
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	2e-07
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	3e-07
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	3e-07
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	4e-07
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	4e-07
PRK06154	565	PRK06154, PRK06154, hypothetical protein; Provisio	6e-07
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	6e-07
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	8e-07
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	3e-06
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	4e-06
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	4e-06
cd02013	196	cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP	5e-06
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	6e-06
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	7e-06
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	9e-06
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	9e-06
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	9e-06
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	1e-05
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	1e-05
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	1e-05
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	2e-05
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	2e-05
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	2e-05
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	2e-05
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	4e-05
PRK07418	616	PRK07418, PRK07418, acetolactate synthase 3 cataly	7e-05
PRK07586	514	PRK07586, PRK07586, hypothetical protein; Validate	7e-05
PRK06725	570	PRK06725, PRK06725, acetolactate synthase 3 cataly	9e-05
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	1e-04
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	1e-04
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	2e-04
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	2e-04
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-04
TIGR03457	579	TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acety	2e-04
PRK07979	574	PRK07979, PRK07979, acetolactate synthase 3 cataly	4e-04
PRK08322	547	PRK08322, PRK08322, acetolactate synthase; Reviewe	4e-04
cd02002	178	cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa	5e-04
PRK06276	586	PRK06276, PRK06276, acetolactate synthase catalyti	5e-04
PRK06466	574	PRK06466, PRK06466, acetolactate synthase 3 cataly	5e-04
PLN02470	585	PLN02470, PLN02470, acetolactate synthase	5e-04
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	5e-04
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	6e-04
PRK06882	574	PRK06882, PRK06882, acetolactate synthase 3 cataly	6e-04
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	7e-04
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	7e-04
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	8e-04
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	0.001
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	0.001
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	0.001
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	0.001
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	0.001
TIGR00118	558	TIGR00118, acolac_lg, acetolactate synthase, large	0.001
PRK08266	542	PRK08266, PRK08266, hypothetical protein; Provisio	0.001
cd02008	178	cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TP	0.001
CHL00099	585	CHL00099, ilvB, acetohydroxyacid synthase large su	0.001
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	0.002
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	0.002
TIGR02720	575	TIGR02720, pyruv_oxi_spxB, pyruvate oxidase	0.002
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	0.003
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	0.003
PRK06456	572	PRK06456, PRK06456, acetolactate synthase catalyti	0.003
PRK08979	572	PRK08979, PRK08979, acetolactate synthase 3 cataly	0.003
PRK08978	548	PRK08978, PRK08978, acetolactate synthase 2 cataly	0.004
PRK07524	535	PRK07524, PRK07524, hypothetical protein; Provisio	0.004

>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

 Score =  156 bits (396), Expect = 3e-47
 Identities = 59/127 (46%), Positives = 75/127 (59%), Gaps = 28/127 (22%)

Query: 11  YYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAA 70
            Y  +H +Q ++PD+ IIV +G NTMD  R +L    PRHRLDAGTFGT+GVGLG+A+AA
Sbjct: 1   PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAA 60

Query: 71  ALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHP 130
           AL      P KRVV V+GD AFGFSGMELET                          R+ 
Sbjct: 61  ALAR----PDKRVVLVEGDGAFGFSGMELETAV------------------------RYN 92

Query: 131 VPILAII 137
           +PI+ ++
Sbjct: 93  LPIVVVV 99

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. Length = 172

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score =  155 bits (395), Expect = 7e-46
 Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 1/148 (0%)

Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           +  L + CS +M +I+  P P++A + G+A AAGCQLVA+CDLA+A   ++F+ PG   G
Sbjct: 86  FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIG 145

Query: 228 IFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
           +FCSTP VAL+R VP      M +TG  I A  A   GL+ RVV + + L++    L + 
Sbjct: 146 LFCSTPMVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAV 204

Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
           I   S + + +GK+  Y+Q  + + +AY
Sbjct: 205 IAAKSPAAVRIGKEAFYRQAEMPLADAY 232

Length = 266

>gnl|CDD|236433 PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated

 Score =  119 bits (300), Expect = 4e-30
 Identities = 48/103 (46%), Positives = 74/103 (71%), Gaps = 7/103 (6%)

Query: 2   IQDESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGT 59
           +  ++ P+N+Y A+ A++  + +N    +V EGANT+D+ R+++    PRHRLD GT+G 
Sbjct: 366 LSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGV 425

Query: 60  MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           MG+G+G+A+AAA+       GK VV ++GDSAFGFSGME+ET+
Sbjct: 426 MGIGMGYAIAAAV-----ETGKPVVAIEGDSAFGFSGMEVETI 463

Length = 569

>gnl|CDD|132298 TIGR03254, oxalate_oxc, oxalyl-CoA decarboxylase

 Score =  109 bits (274), Expect = 1e-26
 Identities = 49/103 (47%), Positives = 72/103 (69%), Gaps = 7/103 (6%)

Query: 2   IQDESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGT 59
           +     P+NY+ A+ A++  + DN    +V EGANT+D+ R+++    PRHRLD GT+G 
Sbjct: 359 LSASESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGV 418

Query: 60  MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
           MG+G+G+A+AAA+       GK VV ++GDSAFGFSGME+ET+
Sbjct: 419 MGIGMGYAIAAAV-----ETGKPVVALEGDSAFGFSGMEVETI 456

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase [Cellular processes, Detoxification]. Length = 554

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score = 93.4 bits (233), Expect = 7e-23
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           +L+ ++LR P P++A ++G A   G +L   CD+ IA   +KF  P  + G+        
Sbjct: 84  ELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQ 143

Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
            L R V     R + +TG  ISA++A   GL+  VV   EEL +    L   +
Sbjct: 144 RLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score = 93.6 bits (233), Expect = 2e-22
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 2/157 (1%)

Query: 160 ASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 219
            S         L+    DL+ ++   P P++A ++G A   G +L   CD+ IA   +KF
Sbjct: 72  LSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKF 131

Query: 220 STPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
             P    G+         L R +  G  + + +TG PISA +A   GL+  VV   EEL 
Sbjct: 132 GLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191

Query: 279 SETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
                L   +       L   K+ +   +  ++ EA 
Sbjct: 192 ERALELARRLAA-PPLALAATKRLVRAALEADLAEAL 227

Length = 257

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 89.2 bits (222), Expect = 1e-20
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 114 EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
            +F+ CS +M +I+  P P++A + G+A AAGCQLVA+CDLA+A   ++F+ PG NI
Sbjct: 88  ALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNI 144

Length = 266

>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 3   QDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
           +     +     I  ++  +PD+ I+V +                PR  L +G  GTMG 
Sbjct: 353 ELADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGF 412

Query: 63  GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           GL  A+ A L      P ++VV + GD  F  +G ELET  
Sbjct: 413 GLPAAIGAKLAA----PDRKVVAIAGDGGFMMNGQELETAV 449

Length = 550

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 6/141 (4%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTP 233
           DL   +   P P++A ++G A   G +L   CD  IA   +KF  P  + GI      T 
Sbjct: 81  DLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEVKLGIIPGAGGTQ 140

Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
              L R + +     M +TG  I AQ+A   GL+ +VV   E+L  E   L   + +   
Sbjct: 141 --RLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPE-EQLVEEAIELAQRLADKPP 197

Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
             L   K  +   +   + E 
Sbjct: 198 LALAALKAAMRAALEDALPEV 218

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 75.9 bits (187), Expect = 5e-16
 Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 45/244 (18%)

Query: 97  MELETLAVDKEG--------RPK---------LDEIFSTCSDLMLSILRHPVPILAIISG 139
           MEL+ + ++KEG        RPK         L E+     D +L  + +   + A+I  
Sbjct: 1   MELKNVILEKEGHIAVVTINRPKALNALNSETLKEL-----DTVLDDIENDDNVYAVI-- 53

Query: 140 VAAAAGCQLVATCDLA-----IATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS 194
           +  A     VA  D++           KF   G  +         L  L  PV  +A I+
Sbjct: 54  LTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVF------RKLENLDKPV--IAAIN 105

Query: 195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVRSMT 250
           G A   GC+L   CD+ IA+  +KF  P    GI   TP       L R V  G  + + 
Sbjct: 106 GFALGGGCELSMACDIRIASEKAKFGQPEVGLGI---TPGFGGTQRLARIVGPGKAKELI 162

Query: 251 ITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLN 310
            TG  I+A++A   GL+ +VV   E+L  E K L + I  N+   + L K  + + M ++
Sbjct: 163 YTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVD 221

Query: 311 IEEA 314
           I+ A
Sbjct: 222 IDTA 225

Length = 260

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           D++ +I R P P++A + G A A G  LVA CD+A+A   + F     R G+  +T +  
Sbjct: 90  DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY 149

Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVL 296
           + R +     R   +T     A +A   GL+  VV + E L+++   L +A++ NS   +
Sbjct: 150 VIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVANSPQAV 208

Query: 297 TLGKQFLYQQMSLNIEEA 314
             GK+ +       I+ A
Sbjct: 209 RAGKRLVRDVAGRPIDAA 226

Length = 262

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI-FCSTPAVALTR 239
            I + P P++A++ G       +L+ +CDL IA + S F+   A  G+ +  +  +  T 
Sbjct: 91  MIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTN 150

Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
                +V+ M  T  PI+AQ A   G++  VV   EELE  T  +   I E +
Sbjct: 151 DAGFHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA 202

Length = 261

>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

 Score = 68.1 bits (167), Expect = 8e-14
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 13  AAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 72
             + A++ ++P++ I+V +  N+       L     R  L +  FG MG GL  A+ AAL
Sbjct: 1   RVLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAAL 60

Query: 73  YCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
                AP + VVC+ GD  F  +G EL T  
Sbjct: 61  ----AAPDRPVVCIAGDGGFMMTGQELATAV 87

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168

>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 32  GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA 91
           G + M   R       PR  L +G  GTMG GL  A+ A L      P + VV + GD  
Sbjct: 3   GCHQMWAAR-YYRFRPPRRYLTSGGLGTMGYGLPAAIGAKLAR----PDRPVVAIAGDGG 57

Query: 92  FGFSGMELETLA 103
           F  +  EL T  
Sbjct: 58  FQMNLQELATAV 69

Length = 151

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTRKVPLGVV 246
           PI+A ++GVA   G +L   CDL +A   + F+ P  R G+      +  L R++ L   
Sbjct: 96  PIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA 155

Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306
             M +TG  ++A++    G +  VV +  EL +  +     IL  S   +   KQ +Y+ 
Sbjct: 156 MGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILACSPLSIRASKQAVYRG 214

Query: 307 MSLNIEEAY 315
           + +++EEA 
Sbjct: 215 LEVSLEEAI 223

Length = 259

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLG 244
           P P++A ++G A   G  L   CDL  A+ ++KFS P A+ G+       A L R +   
Sbjct: 96  PKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRA 155

Query: 245 VVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLY 304
               M + G P+SA++A   GL+ RVV +  EL++E     + +     S L   K+ + 
Sbjct: 156 RAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAGPASALRYTKRAIN 214

Query: 305 QQMSLNIEEA 314
                 +EEA
Sbjct: 215 AATLTELEEA 224

Length = 259

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 64.0 bits (156), Expect = 8e-12
 Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 2/129 (1%)

Query: 187 VPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGV 245
            PI+  I+G A  AG ++   CD+ +A+  +KF    A+ GIF     +  L+R +    
Sbjct: 100 KPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR 159

Query: 246 VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQ 305
            R +++T +P++A+ A   GL+  VV  +E L+   +V   AI++N++ ++   K  +  
Sbjct: 160 AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREV-AEAIIKNNQGMVLRYKSVIND 218

Query: 306 QMSLNIEEA 314
            + L++  A
Sbjct: 219 GLKLDLGHA 227

Length = 265

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV- 235
           +++ +I   PVP++A I+G A  AG QL   CDL +    + F  P A++GI     A+ 
Sbjct: 77  EMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGI-----ALD 131

Query: 236 --ALTRKVPL---GVVRSMTITGIPISAQDAYNAGLITRV 270
              + R   L   G  R+M +    ++A+ A   G+  R+
Sbjct: 132 NWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRI 171

Length = 243

>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 8   PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
           P+  Y  +  +   +  + I++G+G + +      +    P   LD G FG +G G G+A
Sbjct: 360 PMRVYGELAPL---LDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYA 416

Query: 68  LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           LAA L      P ++VV +QGD AFGFS M+++TL 
Sbjct: 417 LAARLA----RPSRQVVLLQGDGAFGFSLMDVDTLV 448

Length = 542

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-L 237
             ++  +  P +A I G     G  +   CD+ IA   S+F  P AR G+      V  L
Sbjct: 99  QAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNL 158

Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
              V     + +  T     A +A   GL+ RV  + ++LE+      + I  N+   L 
Sbjct: 159 VDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVT-AADDLETALADYAATIAGNAPLTLR 217

Query: 298 LGKQFLYQ 305
             K+ + +
Sbjct: 218 AAKRAIAE 225

Length = 269

>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 14  AIHAVQVSIPDNCIIV-GEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 72
            I  +    P + I+    G + M   +       PR  L +G  GTMG GL  A+ A +
Sbjct: 6   VIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKK-PRSWLTSGGLGTMGFGLPAAIGAKV 64

Query: 73  YCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
                 P K V+C+ GD +F  +  EL T A
Sbjct: 65  AR----PDKTVICIDGDGSFQMNIQELATAA 91

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. Length = 186

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPL 243
           P++A ++G A  AGC+L   CD+ IA   ++F  P    GI    P       L R V  
Sbjct: 94  PLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIM---PGAGGTQRLIRSVGK 150

Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
            +   M +TG  I+AQ A  AGL++ V      LE   ++  S I  +S   L   KQ L
Sbjct: 151 SLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQL-ASKIARHSPLALRAAKQAL 209

Query: 304 YQQM 307
            Q  
Sbjct: 210 RQSQ 213

Length = 255

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 183 LRH-PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKV 241
           +RH PVP++A I G     G +L A CDL IA   ++F  P  R GI     A  L R +
Sbjct: 96  VRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLI 155

Query: 242 PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
                R + +TG  I A  A   GL+ RVV    EL++  + L +++       L   K+
Sbjct: 156 GWARTRWLLLTGETIDAAQALAWGLVDRVV-PLAELDAAVERLAASLAGCGPQALRQQKR 214

Query: 302 FLYQQMSLNIEEA 314
            L +   + ++ A
Sbjct: 215 LLREWEDMPLDVA 227

Length = 256

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 10/129 (7%)

Query: 187 VPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP----AVALTRKVP 242
           VP++A ++G A  AGC L   CD+ IA+  ++F+    + G+    P    A  L R + 
Sbjct: 104 VPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGL---IPGDGGAWLLPRIIG 160

Query: 243 LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQF 302
           +     M  TG  I A  A   GL++RVV + ++L    + L   I  N    L L K+ 
Sbjct: 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAANPPHALRLTKRL 219

Query: 303 LY--QQMSL 309
           L   Q  SL
Sbjct: 220 LREGQHASL 228

Length = 266

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 8/110 (7%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTRKV 241
             P++  I+G A   G +L   CD+ IA+  ++F+   AR GI    P     V L +KV
Sbjct: 94  RKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGI---LPGWGLSVRLPQKV 150

Query: 242 PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
            +G  R M++TG  + A DA  AGL+T VV  +E L    ++  S I  N
Sbjct: 151 GIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAAS-IAGN 199

Length = 258

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA---- 236
           +I + P P++A ++G A   GC+L    D+ +A  ++ F  P  + G+    P       
Sbjct: 93  AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLM---PGAGGTQR 149

Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
           L R V       M +TG  + A +A   GL++ VV   + L 
Sbjct: 150 LVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLP 191

Length = 261

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVR 247
           P++A ++G A   GC+L   CD+ IA   +KF  P  + G+    P +  ++++   V +
Sbjct: 96  PVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGV---LPGMGGSQRLTRAVGK 152

Query: 248 S----MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
           +    + +TG  + A +A  AGL++RVV + ++L  E     + I   S   + + K+
Sbjct: 153 AKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASFSLPAVMMAKE 209

Length = 257

>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 31/57 (54%), Positives = 36/57 (63%), Gaps = 5/57 (8%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAV 104
           PRH L +    T+GV L +A+AAAL      PGK+VV V GD  F FS MELET AV
Sbjct: 404 PRHLLFSNGMQTLGVALPWAIAAALV----RPGKKVVSVSGDGGFLFSAMELET-AV 455

Length = 552

>gnl|CDD|238968 cd02010, TPP_ALS, Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 15  IHAVQVSIPDNCI-IVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALY 73
           +H ++  + D+ I ++  GA+ + + R       P   L +    TMGV L  A+ A L 
Sbjct: 5   VHDLRAVMGDDDIVLLDVGAHKIWMAR-YYRTYAPNTCLISNGLATMGVALPGAIGAKLV 63

Query: 74  CNHYAPGKRVVCVQGDSAFGFSGMELET 101
                P ++VV V GD  F  +  ELET
Sbjct: 64  Y----PDRKVVAVSGDGGFMMNSQELET 87

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. Length = 177

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 12/130 (9%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
                + +   P++A I G A   G +L  +C +  AT ++K   P    G+    P  A
Sbjct: 85  VTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLI---PGFA 141

Query: 237 LTRKVPLGVVRS----MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
            T+++P  V ++    M +T  PI+  +A   GL+  V    E L  + K L   I   S
Sbjct: 142 GTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGKS 200

Query: 293 ----RSVLTL 298
               R+VL L
Sbjct: 201 PATTRAVLEL 210

Length = 257

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 8/116 (6%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGV 245
           P P++A ++G+A   GC++     LAIA+  + F+ P  R G+    P    T+++P   
Sbjct: 100 PKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGM---PPTFGGTQRLPRLA 156

Query: 246 VR----SMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
            R     + +TG   SA+ A   GL+  VV   E L +  + L   I+ +S   + 
Sbjct: 157 GRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPA-ARALARRIIRHSPVAVA 211

Length = 260

>gnl|CDD|236042 PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 28/124 (22%)

Query: 14  AIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALY 73
           A+  +Q ++P++ I+  +  N   I  S L     R  L  G+FG  G      + A + 
Sbjct: 391 ALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA 450

Query: 74  CNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPI 133
           C    P + VV   GD A+G S  E                        +++ +RH  P+
Sbjct: 451 C----PDRPVVGFAGDGAWGISMNE------------------------VMTAVRHNWPV 482

Query: 134 LAII 137
            A++
Sbjct: 483 TAVV 486

Length = 588

>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit; Validated

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 6/97 (6%)

Query: 8   PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 66
           PL++Y  I+AV   + DN II  + G + M   ++  LN  PR  L +G  GTMG GL  
Sbjct: 369 PLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNR-PRQWLTSGGLGTMGFGLPA 427

Query: 67  ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           A+ AAL      P ++V+C  GD +   +  E+ T A
Sbjct: 428 AIGAALAN----PERKVLCFSGDGSLMMNIQEMATAA 460

Length = 564

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVV 246
           P++A + G A A G +++   D+ +A  ++KF    A+  +F     AV L R++P  V 
Sbjct: 102 PLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVA 161

Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
             + +TG  I+A +A   GLI  VV   + L+
Sbjct: 162 CDLLLTGRHITAAEAKEIGLIGHVVPDGQALD 193

Length = 263

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRK----V 241
           PVP++A + GV    G Q+    D+ IA   +K S   A+ G+    P +A T      V
Sbjct: 102 PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGL---VPDMAGTVSLRGLV 158

Query: 242 PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
              V R +T T    SA++A   GL+T V    ++  +    L   I + S   +   K 
Sbjct: 159 RKDVARELTYTARVFSAEEALELGLVTHVS---DDPLAAALALAREIAQRSPDAIAAAK- 214

Query: 302 FLYQQMS 308
            L  +  
Sbjct: 215 RLINRSW 221

Length = 262

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 10/132 (7%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-----CS 231
           DL + I R P P++A+++G A   G  L   CDL IA   + F   G + G F      S
Sbjct: 152 DLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSS 211

Query: 232 TPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
                + R V     R M       +A +A   GL+  VV   +ELE ET      IL N
Sbjct: 212 I----MARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRN 266

Query: 292 SRSVLTLGKQFL 303
           S + + + K  L
Sbjct: 267 SPTAIRVLKSAL 278

Length = 327

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--L 243
           PVP +A I+G A   GC+ V   D  +A+  ++   P  + GI    P    T ++P  +
Sbjct: 102 PVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIM---PGFGGTVRLPRLI 158

Query: 244 GVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
           G   ++     G  + A+DA   G +  VV+  +  E+   +L  AI
Sbjct: 159 GADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAI 205

Length = 715

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 3/140 (2%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAV 235
           DL+ ++   P PI+A + GV A AG  L    DL + T ++K +    R G+      A 
Sbjct: 104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGAC 163

Query: 236 A-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
           A L R +  G    +  TG  +SA++    G   R+V   EEL +E + L   +      
Sbjct: 164 ALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAGPTF 222

Query: 295 VLTLGKQFLYQQMSLNIEEA 314
              + K  L+Q+  + +EEA
Sbjct: 223 AHGMTKTMLHQEWDMGLEEA 242

Length = 277

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
           P++A ++G A   G +L    D  +    + F+ P A+ GI   +  V  L +++P  + 
Sbjct: 96  PVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155

Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELES 279
             M +TG  + A++A   G++ RVV   E ++ 
Sbjct: 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDR 188

Length = 261

>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

 Score = 51.0 bits (123), Expect = 8e-08
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 8   PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 66
           P++       +    PD+ I   + G  T+   R L +N   R  L +G   TMG GL  
Sbjct: 1   PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFIL-SGLLATMGNGLPG 59

Query: 67  ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           A+AA L      P ++V+ + GD  F     +L T  
Sbjct: 60  AIAAKLAY----PDRQVIALSGDGGFAMLMGDLITAV 92

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. Length = 178

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
           P++A + G A A G +L   CDL +A   +KF  P  + G+  +   +  L R++P  + 
Sbjct: 93  PLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152

Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306
             + +TG  ++A+ A+  GL+ R+    + L++  + L   I  N    +   K+ + + 
Sbjct: 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALE-LAERIAANGPLAVAASKRIVVES 211

Query: 307 MSLNIEEAY 315
              + +E +
Sbjct: 212 GDWSEDEMF 220

Length = 254

>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
            RH L +    T+GV L +A+ AAL      P  +VV V GD  F FS MELET
Sbjct: 398 ARHLLISNGMQTLGVALPWAIGAALV----RPNTKVVSVSGDGGFLFSSMELET 447

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family [Energy metabolism, Fermentation]. Length = 539

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 8/119 (6%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV---ALTRKVP 242
           P P +A + G   A G  L   CDL +A+  + FS P  R GI    P V   A   ++ 
Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI----PGVEYFAHPWELG 173

Query: 243 LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
               + +  TG  ++A +A+  G++ RVV   +ELE+ET  L   I       L L K+
Sbjct: 174 PRKAKELLFTGDRLTADEAHRLGMVNRVV-PRDELEAETLELARRIAAMPPFGLRLTKR 231

Length = 288

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF--CSTPA 234
           DL   +   P   +A + G   A G   VA  D+ IA   + FS      G+   C  P 
Sbjct: 87  DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLP- 145

Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277
             L R++       MT+   P++AQ A++ GL+    ++++ L
Sbjct: 146 -FLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDTL 187

Length = 255

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 14/146 (9%)

Query: 165 TPGYNILVST---CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST 221
           TPG+  L+     C     ++    VP++A + G     G  LV   D+ +A+  + F  
Sbjct: 70  TPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGL 129

Query: 222 P----GARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL 277
           P    GA         A  L R VP  ++R++  T   I+A + ++ G +  VV   ++L
Sbjct: 130 PEVDRGALGA------ATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVV-PRDQL 182

Query: 278 ESETKVLTSAILENSRSVLTLGKQFL 303
           +     +   I      V+   K+ L
Sbjct: 183 DEAALEVARKIAAKDTRVIRAAKEAL 208

Length = 249

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           D+   I   P P++A+++G A   G  L   CDL IA   ++F   G + G F      +
Sbjct: 88  DVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKVGSFDGGYGSS 147

Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
            + R V     R +        A+ A + GL+  VV    +LE ET      IL+ S
Sbjct: 148 YMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREILQKS 203

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTRKVPLG 244
           P+P++  ++GVAA AG  L   CD+ +A  +++F    A+ G+   +    +L R V  G
Sbjct: 93  PLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLV--G 150

Query: 245 VVRSM--TITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
             R+M   + G  + A+ A + GLI +VV  +  L  E + L
Sbjct: 151 RARAMGLAMLGEKLDARTAASWGLIWQVV-DDAALMDEAQAL 191

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--L 243
           PVP +A I+G+A   GC+ V   D  IA   +K   P  + GI    P    T ++P  +
Sbjct: 102 PVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIM---PGFGGTVRLPRVI 158

Query: 244 GVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILE 290
           G   ++    +G    A+DA   G +  VV++++   +  ++L  AI  
Sbjct: 159 GADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAING 207

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 5/98 (5%)

Query: 5   ESVPLNYYAAIHAVQVSI-PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
           +S P+N Y  +  +Q ++     II  +  +  D      + + P   L  G    +G G
Sbjct: 377 DSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYG 436

Query: 64  LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
           LG A+ A L      P   V+ + GD+AFG +GM+ ET
Sbjct: 437 LGLAMGAKLA----RPDALVINLWGDAAFGMTGMDFET 470

Length = 565

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-----V 235
           ++ +  VP +A I+G     G  + A CDL IAT +++F  P AR    C + +     V
Sbjct: 97  ALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLV 156

Query: 236 ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
           AL   +    V+ M  T   + A++A  AGL+  VV     L++    L
Sbjct: 157 AL---LGAARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADAL 201

Length = 262

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 27/92 (29%), Positives = 44/92 (47%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
            L+ +I+  P P++A I G   A G  LV  CD+ +A   S F+   AR G+  +  ++ 
Sbjct: 92  ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLT 151

Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLIT 268
           L  ++         +TG    A +A   GL+T
Sbjct: 152 LLPRLSPRAAARYYLTGEKFGAAEAARIGLVT 183

Length = 260

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP----L 243
           P++A I G     G  +V  CD+   +  + FS       I   T  +   +++P     
Sbjct: 113 PVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAI---TADLGTLQRLPSIVGY 169

Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
           G    + +TG   S  +A   GL++RV  S E+L+   +++   I   S   +T  K  L
Sbjct: 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVL 229

Query: 304 YQQMSLNIEE 313
            +   L++E+
Sbjct: 230 LRSRELSVEQ 239

Length = 275

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
           D + +I   P P++A + G AA AG  L   CDL +A   +KF     + G+   TP   
Sbjct: 89  DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGL---TPDGG 145

Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
            +  L R +P  +   + + G PISA+  +  G++ R+    + L 
Sbjct: 146 GSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALA 191

Length = 260

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 19/136 (13%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTP--------GARHGIFCSTPAVALTR 239
           P++A ++G A  AG  LVA+CD+ +A+  + F  P        G +H            R
Sbjct: 99  PVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKH----------AMR 148

Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLG 299
                + R M +TG  + A + Y  G+I   +   EEL  E   +   I   S     L 
Sbjct: 149 LFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASKSPLATRLA 207

Query: 300 KQFLYQQMSLNIEEAY 315
           K  L    ++++ + Y
Sbjct: 208 KDALNTIENMSLRDGY 223

Length = 257

>gnl|CDD|238971 cd02013, TPP_Xsc_like, Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 8   PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
           P++    +  ++ ++P++ I+  +  N   +  S L    PR  +   +FG      G+A
Sbjct: 3   PMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGN----CGYA 58

Query: 68  LAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
           L A +     AP + VV + GD A+G S ME+ T
Sbjct: 59  LPAIIGAKAAAPDRPVVAIAGDGAWGMSMMEIMT 92

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. Length = 196

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA--- 236
           L I     P++A ++G A   G  +    D+ +A+TA++F     R GI    P  A   
Sbjct: 107 LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGI---VPEAASSW 163

Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
            L R V L        +G    AQ+A + GL+  V    +EL    + L   I +N+  V
Sbjct: 164 FLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNTSPV 222

Query: 296 -LTLGKQFLYQQMSL 309
            + L +Q +++    
Sbjct: 223 SVALTRQMMWRMAGA 237

Length = 296

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--- 242
           P P++A I+G+A   G +L   CD  IA  ++          I    P    T+++P   
Sbjct: 97  PQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAII---PGAGGTQRLPRLI 153

Query: 243 -LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
            +G  + +  TG  ISAQ+A   GL+  VV +   LE +   +   I  N
Sbjct: 154 GVGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASN 202

Length = 260

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 12/107 (11%)

Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           YN LV     L       P+P++A ++GVAA AG  L   CD+ +A  ++ F     + G
Sbjct: 88  YNPLVRRLRAL-------PLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIG 140

Query: 228 IFCSTPAV-ALTRKVPLGVVRSM--TITGIPISAQDAYNAGLITRVV 271
           +   +     L R V  G+ R++   + G  +SA+ A   GLI RVV
Sbjct: 141 LVPDSGGTWFLPRLV--GMARALGLALLGEKLSAEQAEQWGLIWRVV 185

Length = 262

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 8/131 (6%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLG 244
           P P++A + G A   G  LV  CDL IA+  ++F   G + G        A L R V   
Sbjct: 94  PKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEK 153

Query: 245 VVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLY 304
             R +       +AQ+A   GL+  VV  +++L++E +     I+E S + + + K+   
Sbjct: 154 KAREIWYLCRRYTAQEALAMGLVNAVV-PHDQLDAEVQKWCDEIVEKSPTAIAIAKR--- 209

Query: 305 QQMSLNIEEAY 315
              S N++ A+
Sbjct: 210 ---SFNMDTAH 217

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 44/150 (29%), Positives = 57/150 (38%), Gaps = 46/150 (30%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRK--VPL-- 243
           P++A +SG A A G +L   CDL +A          A  G+FC        R+  VPL  
Sbjct: 95  PVIAAVSGYAVAGGLELALWCDLRVAE-------EDAVFGVFC--------RRWGVPLID 139

Query: 244 -GVVR-----------SMTITGIPISAQDAYNAGLITRVVSSN------EELESETKVLT 285
            G VR            + +TG P+ A +A   GL  RVV         EEL +E     
Sbjct: 140 GGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP 199

Query: 286 SAILENSR-SVLTLGKQFLYQQMSLNIEEA 314
              L   R S          +Q  L  E A
Sbjct: 200 QTCLRADRLSA--------LEQWGLPEEAA 221

Length = 254

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 80  GKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISG 139
           G        D       M  E LA   +   +  +++S   DL       P P++A ++G
Sbjct: 51  GPGAFSAGAD----IKEMAAEPLAQQAQFSLEAQDLWSRLEDL-------PKPVIAAVNG 99

Query: 140 VAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
            A   G +L   CD  IA   +KF  P   +
Sbjct: 100 YALGGGLELALACDYRIAADNAKFGLPEVKL 130

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
           ++LM ++ R  +P LA++ G A      L++ CD+AI    ++F     R G+  +  + 
Sbjct: 91  AELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP 150

Query: 236 ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
            + + +     R   +T      + A   GL+     +  ELE++ +   + +L NS   
Sbjct: 151 FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAA-ELEAQVEAWIANLLLNSPQA 209

Query: 296 LTLGKQFL 303
           L   K  L
Sbjct: 210 LRASKDLL 217

Length = 265

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 23/99 (23%), Positives = 39/99 (39%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
           L++++L  PVPIL  + G     G ++ A  +L  A   +K   P    G+F    +  L
Sbjct: 81  LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLL 140

Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE 276
             ++       +  +G  I   +    GL   V    E 
Sbjct: 141 PERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPEN 179

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
            +  +   P PI+  ++G AA  G       DL +   ++ F     R G+    P    
Sbjct: 95  FLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGL---VPDGGS 151

Query: 238 TRKVP--LGVVRSMTIT--GIPISAQDAYNAGLITRVVSSNEELESETKV 283
           T  +P  +G  R+M ++  G  + A+ A   GL+ RVV   E +    K+
Sbjct: 152 TWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKL 201

Length = 266

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 165 TPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA 224
            P  N+L     DL   I   P P++A+++G A   G  L   CDL IA   + F   G 
Sbjct: 100 IPRLNVL-----DLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGP 154

Query: 225 RHGIFCSTPAVA-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
           + G F      + L R V     R +        A++A + GL+  VV  + +LE ET  
Sbjct: 155 KVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVV-PHADLEKETVQ 213

Query: 284 LTSAILENS 292
               +L  S
Sbjct: 214 WAREMLAKS 222

Length = 282

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 16/124 (12%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS--------TPGARHGI 228
           ++  +I + P P++  + G  A A   +    D  IA+T +KF          P A  G+
Sbjct: 89  EISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDA-GGL 147

Query: 229 FCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
           F  T A+ L R   L       +TG  ++A+ A   G + RV  S E+LE   + L   +
Sbjct: 148 FLLTRAIGLNRATHL------AMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKL 200

Query: 289 LENS 292
              S
Sbjct: 201 RRGS 204

Length = 255

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST--------PGARHGIFCS 231
           L++   P+P +A ++G A  AG  L    D+ IA   + F          PG        
Sbjct: 89  LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWM-- 146

Query: 232 TPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVV 271
                L R V   V R+  + G+   A+ A   GL   V 
Sbjct: 147 -----LQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA 181

Length = 249

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 67  ALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELET-LAVDKEGRPKLDEIFSTCSDLML 124
           ALA AL      P  RVV + G     FS G +++       +   +L  +       + 
Sbjct: 36  ALADALEAAATDPAVRVVVLTGAGR-AFSAGGDIKDFPKAPPKPPDELAPVN----RFLR 90

Query: 125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           +I   P P++A ++G A   G  L   CDL  A+ ++KFS P
Sbjct: 91  AIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLP 132

Length = 259

>gnl|CDD|236014 PRK07418, PRK07418, acetolactate synthase 3 catalytic subunit; Reviewed

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 44  LNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           L N PR  + +   GTMG G+  A+   +      P + V+C+ GD++F  +  EL TLA
Sbjct: 420 LRNGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMNIQELGTLA 475

Length = 616

>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 8   PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
            L   A    +   +P+N I+V E + T   G          H     T G +G GL  A
Sbjct: 336 ALTPEAIAQVIAALLPENAIVVDE-SITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLA 394

Query: 68  LAAALYCNHYAPGKRVVCVQGD 89
             AA+ C    P ++V+ +QGD
Sbjct: 395 TGAAVAC----PDRKVLALQGD 412

Length = 514

>gnl|CDD|180672 PRK06725, PRK06725, acetolactate synthase 3 catalytic subunit; Validated

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           PR  L +G  GTMG G   A+ A L        + V+C+ GD++F  +  EL+T+A
Sbjct: 412 PRTFLTSGGLGTMGFGFPAAIGAQLA----KEEELVICIAGDASFQMNIQELQTIA 463

Length = 570

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 93  GFS-GMELETLAVDKEGRPKLDEIFSTCSDLMLSILRH-PVPILAIISGVAAAAGCQLVA 150
           GF  G +L        G P L     T  + ++  LR  P+P++  ++GVAA AG  L  
Sbjct: 54  GFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLAL 113

Query: 151 TCDLAIATTASKF 163
            CD+ +A  +++F
Sbjct: 114 ACDIVLAAESARF 126

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 3/130 (2%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           D++L++ R   P++A ++G A   G  L    D+ +A++++ F   G  +G+  S   ++
Sbjct: 100 DVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLS 159

Query: 237 LTRKVPLGVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
                 +G  R+  I  TG  + A++A   GL++R V   E+L      + + +   SR 
Sbjct: 160 YLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGFSRP 218

Query: 295 VLTLGKQFLY 304
            + L K+ L+
Sbjct: 219 GIELTKRTLW 228

Length = 276

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 105 DKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS 164
           D  G    D+      +++ +I   PVP++A I+G A  AG QL   CDL +    + F 
Sbjct: 61  DLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQ 120

Query: 165 TP 166
            P
Sbjct: 121 FP 122

Length = 243

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 21/106 (19%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVA-------- 236
           P  ++A++ G AA  G  L   CDL +A+           H  F  T   V         
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLAS---------REHARFKQTDADVGSFDGGYGS 185

Query: 237 --LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESE 280
             L R+V     R +   G   SA++A++ G +  VV  + ELE+E
Sbjct: 186 AYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVV-PHAELETE 230

Length = 302

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 142 AAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML-SILRHPVPILAIISGVAAAA 200
           A A  Q++A C  A   T            +S     M   I +   PI+A ISG     
Sbjct: 74  AGADIQMIAACKTAQEVT-----------QLSQEGQEMFERIEKSQKPIVAAISGSCLGG 122

Query: 201 GCQLVATCDLAIATTASK--FSTPGARHGIFCSTPAVALTRKVP----LGVVRSMTITGI 254
           G +L   C   IAT   K     P    G+    P    T+++P    +     M +TG 
Sbjct: 123 GLELALACHYRIATKDRKTLLGLPEVMLGLL---PGAGGTQRLPKLTGVPAALDMMLTGK 179

Query: 255 PISAQDAYNAGLITRVV 271
            I A  A   G++ ++V
Sbjct: 180 KIRADRAKKMGIVDQLV 196

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|132497 TIGR03457, sulphoacet_xsc, sulfoacetaldehyde acetyltransferase

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 28/135 (20%)

Query: 3   QDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
           Q+E   L+    +  ++ ++P++ I+  +  N   +  S L    PR  L   +FG  G 
Sbjct: 375 QEEGNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGY 434

Query: 63  GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDL 122
                + A +      P + VV   GD A+G S  E                        
Sbjct: 435 AFPTIIGAKIAA----PDRPVVAYAGDGAWGMSMNE------------------------ 466

Query: 123 MLSILRHPVPILAII 137
           +++ +RH +P+ A++
Sbjct: 467 IMTAVRHDIPVTAVV 481

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur [Central intermediary metabolism, Other]. Length = 579

>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit; Validated

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 30  GEGANTMDIGRSLLLNNL------PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV 83
           G+   T D+G+  +   L      PR  +++G  GTMG    F L AAL      P + V
Sbjct: 387 GDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMG----FGLPAALGVKMALPEETV 442

Query: 84  VCVQGDSAFGFSGMELET 101
           VCV GD +   +  EL T
Sbjct: 443 VCVTGDGSIQMNIQELST 460

Length = 574

>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 23/111 (20%)

Query: 3   QDESVPLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGR--------SLLLNNLPRHRLD 53
            D+  P+     +  + +V   D+ +I+  GA  +   R        + LL+N       
Sbjct: 351 DDDRFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFARNYRAYEPNTCLLDN------- 403

Query: 54  AGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAV 104
                TMG GL  A+AA L      P ++V+ V GD  F  +  ELET AV
Sbjct: 404 --ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNSQELET-AV 447

Length = 547

>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 13  AAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 72
           AA+ A    +P++ IIV E A T  +     L             G +G GL  A+ AAL
Sbjct: 8   AALAAA---LPEDAIIVDE-AVTNGLPLRDQLPLTRPGSYFTLRGGGLGWGLPAAVGAAL 63

Query: 73  YCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
                 P ++VV + GD +F ++   L T A
Sbjct: 64  AN----PDRKVVAIIGDGSFMYTIQALWTAA 90

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178

>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit; Reviewed

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           PR  + +G  GTMG G   A+ A +      P   V+ + GD  F  +  EL T+A
Sbjct: 409 PRSFISSGGLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMNSQELATIA 460

Length = 586

>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit; Validated

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 46  NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
           N P   +++G  GTMG GL  A+   L      P + V CV G+ +   +  EL T
Sbjct: 411 NKPNRWINSGGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMNIQELST 462

Length = 574

>gnl|CDD|215261 PLN02470, PLN02470, acetolactate synthase

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDK 106
           PR  L +G  G MG GL  A+ AA       P   VV + GD +F  +  EL T+ V+ 
Sbjct: 416 PRRWLTSGGLGAMGFGLPAAIGAAAA----NPDAIVVDIDGDGSFIMNIQELATIHVEN 470

Length = 585

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGV 245
            +P +A++ G A   G +L  +CDL I    + F  P     I    P    T+++P  V
Sbjct: 88  SIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAII---PGAGGTQRLPRLV 144

Query: 246 VRS----MTITGIPISAQDAYNAGLITRVVSSNE 275
            RS    +  TG  I A++A + GL+   V + E
Sbjct: 145 GRSRAKELIFTGRRIGAREAASMGLVNYCVPAGE 178

Length = 251

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR------HGIFCSTPAVALTR 239
             P++A I+G  A  G      CD+  A   +KF+T  AR      HGI     +  L R
Sbjct: 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGI-----SWILPR 162

Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
            V       + ++     A++A   GL+ RVV  +E +E
Sbjct: 163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELME 201

Length = 272

>gnl|CDD|168717 PRK06882, PRK06882, acetolactate synthase 3 catalytic subunit; Validated

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 46  NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
           + PR  +++G  GTMG    F L AA+      P   VVCV GD +   +  EL T
Sbjct: 409 DKPRRWINSGGAGTMG----FGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELST 460

Length = 574

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           D++ +I R P P++A + G A A G  LVA CD+A+A   + F   
Sbjct: 90  DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLS 135

Length = 262

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
           P++A + G     G  L++ CD+  A+  +KFS      G+     ++  L R +  G +
Sbjct: 111 PVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHL 170

Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306
           R + +TG  I A +A   GL+ RV    + L +        I   S   +   K+ L   
Sbjct: 171 RELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYM 230

Length = 272

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--LGV 245
           PI++ + G+A   G  +   CDL  A+  S F TP     +    P    +   P  +G 
Sbjct: 99  PIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLAL---VPEAGSSLLAPRLMGH 155

Query: 246 VRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
            R+  +   G   SA+ A  AGLI ++V   E +E+ET      +
Sbjct: 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEEL 199

Length = 251

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
           DL+ ++   P PI+A + GV A AG  L    DL + T ++K 
Sbjct: 104 DLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKT 146

Length = 277

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK 162
           AV  E R  +D +         ++ +  VP +A I+G     G  + A CDL IAT +++
Sbjct: 84  AVAYERR--IDRVLG-------ALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSAR 134

Query: 163 FSTP 166
           F  P
Sbjct: 135 FGFP 138

Length = 262

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 23/109 (21%)

Query: 67  ALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
            L  AL       G R + + G +  GF  G +L    V   G            DL  S
Sbjct: 35  ELREALDQVE-DDGARALLLTG-AGRGFCAGQDLADRDVTPGGAM---------PDLGES 83

Query: 126 ILRH-----------PVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
           I              P+P++A ++GVAA AG  L   CD+ +A  ++ F
Sbjct: 84  IETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASF 132

Length = 262

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
           +D++ +IL    P++  ++G+    G ++    D  IA   + F   G +HG   S P  
Sbjct: 114 NDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHG---SAPIG 170

Query: 236 ALTRKVPL--GVVRSMTITGI---PISAQDAYNAGLITRVV 271
             T  +PL  G  ++M ++G    P SA  A   G+I  VV
Sbjct: 171 GATDFLPLMIGCEQAM-VSGTLCEPWSAHKAKRLGIIMDVV 210

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 165 TPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA 224
            P  N+L     DL   I   P P++A+++G A   G  L   CDL IA   + F   G 
Sbjct: 91  VPRLNVL-----DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGP 145

Query: 225 RHGIF-CSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
           + G F     A  L R V     R +        AQ+A + GL+  VV    +LE ET  
Sbjct: 146 KVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVR 204

Query: 284 LTSAILENS 292
               +L+NS
Sbjct: 205 WCREMLQNS 213

Length = 273

>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit, biosynthetic type

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 16/109 (14%)

Query: 1   MIQDESVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRS------LLLNNLPRHRLDA 54
            +      +     I  +     D  I+      T D+G+             PR  + +
Sbjct: 355 KMDYTEEGIKPQQVIEELSRVTKDEAIV------TTDVGQHQMWAAQFYPFRKPRRFITS 408

Query: 55  GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           G  GTMG GL  A+ A +      P   V+C+ GD +F  +  EL T  
Sbjct: 409 GGLGTMGFGLPAAIGAKV----AKPESTVICITGDGSFQMNLQELSTAV 453

Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this model also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed [Amino acid biosynthesis, Pyruvate family]. Length = 558

>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
           PR  +  G  GT+G G   AL A +      P + VV + GD  F F   EL T
Sbjct: 392 PRTFVTCGYQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFGVQELAT 441

Length = 542

>gnl|CDD|238966 cd02008, TPP_IOR_alpha, Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 37 DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSG 96
          DIG   L    P + +D  T   MG  +G A+  A      +  K+VV V GDS F  SG
Sbjct: 32 DIGCYTLGALPPLNAID--TCTCMGASIGVAIGMA----KASEDKKVVAVIGDSTFFHSG 85

Query: 97 M 97
          +
Sbjct: 86 I 86

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. Length = 178

>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           PR  L +   GTMG GL  A+ A +      P + V+C+ GD++F  +  EL T+A
Sbjct: 420 PRKWLSSAGLGTMGYGLPAAIGAQIA----HPNELVICISGDASFQMNLQELGTIA 471

Length = 585

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRK 240
           I    VP++A + G     G +L +   + +A  ++ F+ P  + GIF      V + R 
Sbjct: 88  IQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRL 147

Query: 241 VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE 278
           + +  +  M +TG    AQ+    GL   +V + E L+
Sbjct: 148 IGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALD 185

Length = 255

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 178 LMLSILRH-PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           +ML  L   P P++  I G A   G  L++ CD+AIA + ++F     R G+  +T +  
Sbjct: 91  MMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY 150

Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVV 271
           +  ++     R + ++     A++A   GL++RVV
Sbjct: 151 VVARMGEANARRVFMSARLFDAEEAVRLGLLSRVV 185

Length = 262

>gnl|CDD|213733 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 8   PLNYYAAIHAV-QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGF 66
           PL  Y    A+ +++  D    +  G   ++  R L +    +    +  F TMGVG+  
Sbjct: 358 PLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWI-TSNLFATMGVGVPG 416

Query: 67  ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCS 120
           A+AA L   +Y P ++V  + GD AF  +  +L  L   +   P ++ +FS C+
Sbjct: 417 AIAAKL---NY-PDRQVFNLAGDGAFSMTMQDL--LTQVQYHLPVINIVFSNCT 464

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name [Energy metabolism, Aerobic]. Length = 575

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
            L+ +I+  P P++A I G   A G  LV  CD+ +A   S F
Sbjct: 92  ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTF 134

Length = 260

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
           ++LM ++ R  +P LA++ G A      L++ CD+AI    ++F
Sbjct: 91  AELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQF 134

Length = 265

>gnl|CDD|180569 PRK06456, PRK06456, acetolactate synthase catalytic subunit; Reviewed

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 4   DESVPLNYYAAIHAVQVSIPDNCIIV-GEGANTMDIGRSLLLNNL-PRHRLDAGTFGTMG 61
           +E+  L  +  +  ++ ++P + I+  G G + M     +    L PR  L +   GTMG
Sbjct: 367 EENGKLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAE--VFWEVLEPRTFLTSSGMGTMG 424

Query: 62  VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF 116
            GL  A+ A L      P K VV + GD +F  +G  L T AVD E  P +  IF
Sbjct: 425 FGLPAAMGAKLA----RPDKVVVDLDGDGSFLMTGTNLAT-AVD-EHIPVISVIF 473

Length = 572

>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit; Validated

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 46  NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET 101
           + PR  +++G  GTMG    F L AA+      P + VVCV GD +   +  EL T
Sbjct: 409 DKPRRWINSGGLGTMG----FGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELST 460

Length = 572

>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           P + + +   GTMG GL  A+ A +      P   V+CV GD +F  +  EL T+ 
Sbjct: 391 PENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNVQELGTIK 442

Length = 548

>gnl|CDD|236041 PRK07524, PRK07524, hypothetical protein; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 25  NCIIVGEGANTMDIGRSLLLNNLPRHRLDAGT-FGTMGVGLGFALAAALYCNHYAPGKRV 83
           + I VG+    +  G      + PR   +A T +GT+G GL  A+ AAL     AP + V
Sbjct: 373 DAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG----APERPV 428

Query: 84  VCVQGDSAFGFSGMELETLAVDKEGRP 110
           VC+ GD    F+  EL + AV+    P
Sbjct: 429 VCLVGDGGLQFTLPELAS-AVE-ADLP 453

Length = 535

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
KOG1680|consensus	290		100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
KOG1681|consensus	292		100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
KOG1679|consensus	291		100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
KOG0016|consensus	266		100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.98
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.97
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	99.97
KOG1682|consensus	287		99.97
KOG1684|consensus	401		99.94
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.93
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.92
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.65
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	99.62
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	99.6
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.58
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	99.54
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.51
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	99.5
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	99.49
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	99.46
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	99.44
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	99.44
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	99.43
PRK08273	597	thiamine pyrophosphate protein; Provisional	99.43
cd02005	183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	99.42
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	99.41
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	99.41
KOG1185|consensus	571		99.4
PRK12474	518	hypothetical protein; Provisional	99.39
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	99.39
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	99.39
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	99.38
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	99.38
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	99.38
PLN02470	585	acetolactate synthase	99.38
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	99.37
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	99.37
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	99.36
PRK06457	549	pyruvate dehydrogenase; Provisional	99.36
PRK06154	565	hypothetical protein; Provisional	99.36
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.35
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	99.35
PRK09124	574	pyruvate dehydrogenase; Provisional	99.35
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	99.34
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	99.34
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	99.34
PRK07586	514	hypothetical protein; Validated	99.34
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	99.33
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	99.33
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	99.33
PRK05858	542	hypothetical protein; Provisional	99.33
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	99.32
PRK08611	576	pyruvate oxidase; Provisional	99.32
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	99.32
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	99.31
PRK08155	564	acetolactate synthase catalytic subunit; Validated	99.31
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	99.3
PLN02573	578	pyruvate decarboxylase	99.3
PRK08617	552	acetolactate synthase; Reviewed	99.3
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	99.29
PRK06163	202	hypothetical protein; Provisional	99.29
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	99.29
PRK11269	591	glyoxylate carboligase; Provisional	99.29
PRK06546	578	pyruvate dehydrogenase; Provisional	99.28
PRK08322	547	acetolactate synthase; Reviewed	99.27
KOG4166|consensus	675		99.27
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	99.26
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	99.25
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.24
KOG1684|consensus	401		99.23
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	99.23
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	99.23
PRK06112	578	acetolactate synthase catalytic subunit; Validated	99.2
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	99.2
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.18
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	99.17
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.17
PRK05980	260	enoyl-CoA hydratase; Provisional	99.17
PLN02600	251	enoyl-CoA hydratase	99.16
PRK08199	557	thiamine pyrophosphate protein; Validated	99.16
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	99.15
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	99.14
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	99.13
PRK07658	257	enoyl-CoA hydratase; Provisional	99.13
PRK06143	256	enoyl-CoA hydratase; Provisional	99.12
PRK09076	258	enoyl-CoA hydratase; Provisional	99.12
PRK08150	255	enoyl-CoA hydratase; Provisional	99.12
KOG1680|consensus	290		99.12
PRK07657	260	enoyl-CoA hydratase; Provisional	99.12
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	99.11
PRK06142	272	enoyl-CoA hydratase; Provisional	99.11
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	99.11
PRK07938	249	enoyl-CoA hydratase; Provisional	99.11
PRK07511	260	enoyl-CoA hydratase; Provisional	99.1
COG3961	557	Pyruvate decarboxylase and related thiamine pyroph	99.1
PRK07524	535	hypothetical protein; Provisional	99.1
PRK07854	243	enoyl-CoA hydratase; Provisional	99.1
PRK07260	255	enoyl-CoA hydratase; Provisional	99.09
PRK05862	257	enoyl-CoA hydratase; Provisional	99.08
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	99.08
PRK07092	530	benzoylformate decarboxylase; Reviewed	99.07
PRK08258	277	enoyl-CoA hydratase; Provisional	99.07
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	99.07
PRK08138	261	enoyl-CoA hydratase; Provisional	99.07
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	99.06
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	99.06
PRK07468	262	enoyl-CoA hydratase; Provisional	99.06
PRK06127	269	enoyl-CoA hydratase; Provisional	99.06
PRK06495	257	enoyl-CoA hydratase; Provisional	99.06
PRK07509	262	enoyl-CoA hydratase; Provisional	99.06
PRK07659	260	enoyl-CoA hydratase; Provisional	99.06
PRK08266	542	hypothetical protein; Provisional	99.05
PRK08139	266	enoyl-CoA hydratase; Validated	99.05
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	99.05
PRK07799	263	enoyl-CoA hydratase; Provisional	99.05
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	99.04
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	99.04
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.04
PRK08140	262	enoyl-CoA hydratase; Provisional	99.04
PRK09245	266	enoyl-CoA hydratase; Provisional	99.04
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	99.03
PRK06688	259	enoyl-CoA hydratase; Provisional	99.03
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	99.03
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.02
PRK06494	259	enoyl-CoA hydratase; Provisional	99.02
PRK06563	255	enoyl-CoA hydratase; Provisional	99.02
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.02
PRK08327	569	acetolactate synthase catalytic subunit; Validated	99.02
PRK05981	266	enoyl-CoA hydratase; Provisional	99.01
PRK05870	249	enoyl-CoA hydratase; Provisional	99.01
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	99.01
PRK07064	544	hypothetical protein; Provisional	99.01
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	98.99
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	98.99
PRK05995	262	enoyl-CoA hydratase; Provisional	98.99
KOG1679|consensus	291		98.99
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	98.99
PRK07327	268	enoyl-CoA hydratase; Provisional	98.99
PLN02888	265	enoyl-CoA hydratase	98.99
PRK06210	272	enoyl-CoA hydratase; Provisional	98.98
KOG1681|consensus	292		98.97
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	98.97
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	98.96
PRK08260	296	enoyl-CoA hydratase; Provisional	98.95
PRK05864	276	enoyl-CoA hydratase; Provisional	98.95
PRK06072	248	enoyl-CoA hydratase; Provisional	98.95
PRK06023	251	enoyl-CoA hydratase; Provisional	98.95
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	98.95
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	98.94
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	98.94
PRK06144	262	enoyl-CoA hydratase; Provisional	98.93
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.92
PRK08252	254	enoyl-CoA hydratase; Provisional	98.92
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.91
PRK07827	260	enoyl-CoA hydratase; Provisional	98.91
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	98.91
PLN02921	327	naphthoate synthase	98.9
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	98.89
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.89
PRK08788	287	enoyl-CoA hydratase; Validated	98.89
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.86
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	98.86
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	98.86
PRK08321	302	naphthoate synthase; Validated	98.85
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.84
PRK05869	222	enoyl-CoA hydratase; Validated	98.83
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	98.82
PRK06190	258	enoyl-CoA hydratase; Provisional	98.82
PRK12478	298	enoyl-CoA hydratase; Provisional	98.8
PRK08259	254	enoyl-CoA hydratase; Provisional	98.8
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.79
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.74
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	98.73
PRK08272	302	enoyl-CoA hydratase; Provisional	98.72
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	98.71
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	98.7
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	98.69
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.67
PRK06213	229	enoyl-CoA hydratase; Provisional	98.66
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	98.64
PRK08290	288	enoyl-CoA hydratase; Provisional	98.58
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	98.58
COG3960	592	Glyoxylate carboligase [General function predictio	98.57
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	98.54
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	98.48
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	98.44
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	98.4
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	98.31
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.3
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	98.27
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	98.27
KOG1184|consensus	561		98.21
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	98.14
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.14
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	98.04
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.0
COG3962	617	Acetolactate synthase [Amino acid transport and me	97.99
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	97.96
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.94
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.94
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	97.86
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	97.82
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	97.81
KOG1682|consensus	287		97.79
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	97.76
PRK10949	618	protease 4; Provisional	97.74
KOG0016|consensus	266		97.68
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	97.58
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	97.58
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	97.55
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	97.42
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.25
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	97.18
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.17
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.16
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.12
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	97.1
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	97.09
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	97.07
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.07
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	97.07
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	97.02
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	96.95
PRK11778	330	putative inner membrane peptidase; Provisional	96.92
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	96.92
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	96.87
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	96.76
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	96.69
KOG1683|consensus	380		96.64
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.55
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	96.51
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.37
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	96.23
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	96.23
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	96.22
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.21
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	96.12
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	96.11
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	96.03
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	95.93
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	95.73
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	95.5
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	95.45
cd02012	255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	95.23
PRK10949	618	protease 4; Provisional	94.77
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	94.52
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	94.51
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	94.45
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	94.26
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	93.81
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	92.16
PRK05899	624	transketolase; Reviewed	91.88
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	91.83
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	91.82
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	91.23
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	89.9
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	89.55
PF13766	118	ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD	88.65
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	86.33
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	85.6
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	85.03
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	84.76
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	83.49
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	82.54
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	82.15
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	81.58
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	81.13

>KOG1680|consensus

Probab=100.00  E-value=2e-43  Score=291.17  Aligned_cols=209  Identities=26%  Similarity=0.284  Sum_probs=186.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |+.||||||+.+|++++.+.        .+|.+++..+++|+.+.++||||.|+.||+|.||+++......         
T Consensus        47 I~lItlNRP~~~Nal~~~~m--------~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~---------  109 (290)
T KOG1680|consen   47 IALITLNRPKALNALCRATM--------LELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQ---------  109 (290)
T ss_pred             eEEEEeCChHHhccccHHHH--------HHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccc---------
Confidence            89999999999999999887        9999999999999999999999999999999999988541100         


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         |..   ..         .+    ...+..+.+.+||+|++++|+|
T Consensus       110 -----------------------------------~~~---~~---------~~----~~~~~~~~~~~KPvIaainG~A  138 (290)
T KOG1680|consen  110 -----------------------------------DVS---DG---------IF----LRVWDLVSRLKKPVIAAINGFA  138 (290)
T ss_pred             -----------------------------------ccc---cc---------cc----cchhhhhhhcccceeEeeecee
Confidence                                               000   00         00    1122334489999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|++.||++++++.++|++|+.++|++|.+ ++.+|++.+|.++|++++++|++++++||.++|+|++|+|. ++
T Consensus       139 lgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~  217 (290)
T KOG1680|consen  139 LGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPS-GD  217 (290)
T ss_pred             eccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecc-hh
Confidence            99999999999999999999999999999999998 45899999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      +.+++.+++++|++.||..++..|+.++.+.+.++.++|
T Consensus       218 ~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l  256 (290)
T KOG1680|consen  218 ALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGL  256 (290)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHH
Confidence            999999999999999999999999999999998887764

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.3e-42  Score=298.08  Aligned_cols=221  Identities=33%  Similarity=0.545  Sum_probs=191.2

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      ++.+.+.. |+    ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++
T Consensus        10 ~~~~~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~   77 (266)
T PRK08139         10 APLLLREDRDG----VATLTLNRPQAFNALSEAML--------AALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEM   77 (266)
T ss_pred             CCceEEEeeCC----EEEEEeCCcccccCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHH
Confidence            34444443 55    88899999999999999998        9999999999999999999999999999999999865


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ....                                      ..      +  .           ...+...+..++..+
T Consensus        78 ~~~~--------------------------------------~~------~--~-----------~~~~~~~~~~~~~~l  100 (266)
T PRK08139         78 RAAR--------------------------------------GL------A--Y-----------FRALFARCSRVMQAI  100 (266)
T ss_pred             hccc--------------------------------------ch------h--H-----------HHHHHHHHHHHHHHH
Confidence            3200                                      00      0  0           001122234566778


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      .++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|.++++.+++++|..++++++++|+.++++||+
T Consensus       101 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~  180 (266)
T PRK08139        101 VALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPMVALSRNVPRKQAMEMLLTGEFIDAATAR  180 (266)
T ss_pred             HhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccHHHHHHHhCHHHHHHHHHcCCccCHHHHH
Confidence            89999999999999999999999999999999999999999999999887777899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|||+++++. +++.+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus       181 ~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  231 (266)
T PRK08139        181 EWGLVNRVVPA-DALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADA  231 (266)
T ss_pred             HcCCccEeeCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            99999999999 9999999999999999999999999999998877766654

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.4e-42  Score=294.65  Aligned_cols=210  Identities=26%  Similarity=0.361  Sum_probs=183.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.| ++||+|.|++++...  . +.     
T Consensus        17 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~--~-~~-----   80 (256)
T PRK06143         17 VATLTIRNAGSLNILGTPVI--------LALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL--D-QA-----   80 (256)
T ss_pred             EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc--C-hh-----
Confidence            78899999999999999999        9999999999999999999999999 689999999875320  0 00     


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                          +..              .+...+..++..+.++||||||+|+|+
T Consensus        81 ------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~  110 (256)
T PRK06143         81 ------------------------------------SAE--------------AFISRLRDLCDAVRHFPVPVIARIPGW  110 (256)
T ss_pred             ------------------------------------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence                                                000              111223456677889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      |+|||++|+++||+++++++++|++||.++|+++.++++++++++|..++++++++|+.++++||+++|++++++++ ++
T Consensus       111 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  189 (256)
T PRK06143        111 CLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPL-AE  189 (256)
T ss_pred             EeehhHHHHHhCCEEEecCCCEEeCCccccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HH
Confidence            99999999999999999999999999999998433456789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++++..||.+++.+|+.++.....+++++
T Consensus       190 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  227 (256)
T PRK06143        190 LDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVA  227 (256)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHH
Confidence            99999999999999999999999999998776666553

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=7.6e-42  Score=297.03  Aligned_cols=214  Identities=19%  Similarity=0.231  Sum_probs=185.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++......         
T Consensus        18 va~itlnrp~~~Nal~~~m~--------~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~---------   80 (275)
T PRK09120         18 IAWVTLNRPEKRNAMSPTLN--------REMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDA---------   80 (275)
T ss_pred             EEEEEecCcccccCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhcccc---------
Confidence            88999999999999999998        9999999999999999999999999999999999876320000         


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 +.      + ... .          ........++..+..+||||||+|+|+|
T Consensus        81 ---------------------------~~------~-~~~-~----------~~~~~~~~~~~~l~~~~kPvIAav~G~a  115 (275)
T PRK09120         81 ---------------------------QP------E-ILQ-E----------RIRREAYGWWRRLRWYQKPTIAMVNGWC  115 (275)
T ss_pred             ---------------------------ch------h-HHH-H----------HHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence                                       00      0 000 0          0111223456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       116 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~  194 (275)
T PRK09120        116 FGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPL-AQ  194 (275)
T ss_pred             echhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCH-HH
Confidence            999999999999999999999999999999999885 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|+..||.+++.+|+.++.....+++++
T Consensus       195 l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  232 (275)
T PRK09120        195 LRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQA  232 (275)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999998877766543

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-41  Score=293.07  Aligned_cols=208  Identities=21%  Similarity=0.271  Sum_probs=182.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++  +++|+|||||.|+.||+|.|++++...  . +       
T Consensus        12 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~--~-~-------   71 (255)
T PRK08150         12 VATIGLNRPAKRNALNDGLI--------AALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRER--D-A-------   71 (255)
T ss_pred             EEEEEEcCCccccCCCHHHH--------HHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhc--c-c-------
Confidence            78899999999999999999        99999999987  789999999999999999999876320  0 0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  .      +..              .....+..++..+.++|||+||+|+|+|
T Consensus        72 ----------------------------~------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~a  103 (255)
T PRK08150         72 ----------------------------G------EGM--------------HHSRRWHRVFDKIQYGRVPVIAALHGAV  103 (255)
T ss_pred             ----------------------------h------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence                                        0      000              0111233456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.++ .+.+++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       104 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~  182 (255)
T PRK08150        104 VGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GE  182 (255)
T ss_pred             EcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hH
Confidence            999999999999999999999999999999999875 4679999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.+|.+++.+|+.+++....+++++
T Consensus       183 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  220 (255)
T PRK08150        183 ALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDG  220 (255)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            99999999999999999999999999998776666543

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-41  Score=292.59  Aligned_cols=218  Identities=26%  Similarity=0.326  Sum_probs=189.0

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      ++.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++
T Consensus         3 ~~~v~~~~~~~----va~Itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~   70 (258)
T PRK06190          3 EPILLVETHDR----VRTLTLNRPEARNALSAALR--------RALFAALAEADADDDVDVVVLTGADPAFCAGLDLKEL   70 (258)
T ss_pred             CceEEEEeeCC----EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHH
Confidence            44444443 55    78999999999999999998        9999999999999999999999999999999999876


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ...   ..                                   .       ...  .             ..+..++..+
T Consensus        71 ~~~---~~-----------------------------------~-------~~~--~-------------~~~~~~~~~i   90 (258)
T PRK06190         71 GGD---GS-----------------------------------A-------YGA--Q-------------DALPNPSPAW   90 (258)
T ss_pred             hcc---cc-----------------------------------h-------hhH--H-------------HHHHHHHHHH
Confidence            320   00                                   0       000  0             0112355678


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++|||+||+|+|+|+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|++++++||
T Consensus        91 ~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA  170 (258)
T PRK06190         91 PAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADA  170 (258)
T ss_pred             HhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHH
Confidence            899999999999999999999999999999999999999999999999875 4789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +++|+++++++. +++.+.+.+++++|++.||.+++.+|+.++.....+++++
T Consensus       171 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  222 (258)
T PRK06190        171 LRAGLVTEVVPH-DELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDA  222 (258)
T ss_pred             HHcCCCeEecCH-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999998 9999999999999999999999999999998877776654

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-41  Score=292.17  Aligned_cols=208  Identities=23%  Similarity=0.325  Sum_probs=184.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++.+++.|+++|+|||+|.|+.||+|+|++++...    ..      
T Consensus        14 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~----~~------   75 (257)
T PRK05862         14 VGLITLNRPKALNALNDALM--------DELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL----SF------   75 (257)
T ss_pred             EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc----ch------
Confidence            78899999999999999998        9999999999999999999999999999999999875310    00      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 .       +  .              +...+...+..+..+|||+||+|+|+|
T Consensus        76 ---------------------------~-------~--~--------------~~~~~~~~~~~l~~~~kpvIaav~G~a  105 (257)
T PRK05862         76 ---------------------------M-------D--V--------------YKGDYITNWEKVARIRKPVIAAVAGYA  105 (257)
T ss_pred             ---------------------------h-------H--H--------------HHHHHHHHHHHHHhCCCCEEEEEccEE
Confidence                                       0       0  0              000111245577899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+++++++. ++
T Consensus       106 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  184 (257)
T PRK05862        106 LGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DK  184 (257)
T ss_pred             eHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hH
Confidence            999999999999999999999999999999999885 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.+|.++..+|++++.....+++++
T Consensus       185 l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~  222 (257)
T PRK05862        185 LLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEG  222 (257)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999998877776654

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.4e-41  Score=293.97  Aligned_cols=212  Identities=19%  Similarity=0.253  Sum_probs=184.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||||+++|+++..++        .+|.++++.++.|+++|+|||+|.|+.||+|.|++++....   +       
T Consensus        16 v~~itlnrp~~~Nal~~~~~--------~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~---~-------   77 (265)
T PRK05674         16 FATLWLSRADKNNAFNAQMI--------RELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA---D-------   77 (265)
T ss_pred             EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc---c-------
Confidence            88899999999999999998        99999999999999999999999999999999998763200   0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  ...  ..+.               .....+..++..+.++|||+|++|+|+|
T Consensus        78 ----------------------------~~~--~~~~---------------~~~~~~~~~~~~l~~~~kPvIaaV~G~a  112 (265)
T PRK05674         78 ----------------------------LDY--NTNL---------------DDARELAELMYNLYRLKIPTLAVVQGAA  112 (265)
T ss_pred             ----------------------------ccc--hhhh---------------HHHHHHHHHHHHHHcCCCCEEEEEcCEE
Confidence                                        000  0000               0011123456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|++|.+++..+++++|..++++++++|+.++++||+++|+|+++++. +++
T Consensus       113 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l  191 (265)
T PRK05674        113 FGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPA-AEL  191 (265)
T ss_pred             EechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHHHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCH-HHH
Confidence            9999999999999999999999999999999998776678999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      .+.+.++++++++.||.+++.+|+.++.....++++
T Consensus       192 ~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~  227 (265)
T PRK05674        192 EAQVEAWIANLLLNSPQALRASKDLLREVGDGELSP  227 (265)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhH
Confidence            999999999999999999999999999887766544

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-41  Score=292.62  Aligned_cols=215  Identities=24%  Similarity=0.321  Sum_probs=184.4

Q ss_pred             hhhhhhccCCCcccccC-CCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDA-GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~-~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++. .++        .+|.+++++++.|+++|+|||+|.|++||+|.|++++...... .      
T Consensus        13 v~~itlnrp~~~Nal~~~~~~--------~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~-~------   77 (266)
T PRK09245         13 IVTLTMNRPETRNALSDNDAV--------DALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGA-F------   77 (266)
T ss_pred             EEEEEECCcccccCCChHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccc-c------
Confidence            88899999999999995 788        9999999999999999999999999999999999876420000 0      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                                                 .+       +..           ... .+...+..++..+.++|||+||+|+|
T Consensus        78 ---------------------------~~-------~~~-----------~~~~~~~~~~~~~~~~l~~~~kpvIaav~G  112 (266)
T PRK09245         78 ---------------------------GG-------SPA-----------DIRQGYRHGIQRIPLALYNLEVPVIAAVNG  112 (266)
T ss_pred             ---------------------------cc-------cch-----------hHHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence                                       00       000           000 11112334566788999999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN  274 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~  274 (315)
                      +|+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|++++++||+++|+|+++++. 
T Consensus       113 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-  191 (266)
T PRK09245        113 PAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPA-  191 (266)
T ss_pred             EeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCH-
Confidence            99999999999999999999999999999999999875 4789999999999999999999999999999999999999 


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        275 EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +++.+.+.+++++|++.||.+++.+|+++++....++++
T Consensus       192 ~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~  230 (266)
T PRK09245        192 DQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDT  230 (266)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHH
Confidence            999999999999999999999999999999876666654

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=2.4e-41  Score=290.49  Aligned_cols=210  Identities=19%  Similarity=0.258  Sum_probs=184.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC-CCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-SAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~-g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|. |+.||+|+|++++...  ...      
T Consensus         5 v~~itlnrp~~~Nal~~~~~--------~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~--~~~------   68 (251)
T PLN02600          5 IVELRLDRPEAKNAIGKEML--------RGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM--SPS------   68 (251)
T ss_pred             EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc--ChH------
Confidence            67789999999999999999        999999999999999999999998 5789999999876320  000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                          +.              ..+...+..++..+.++|||+||+|+|+
T Consensus        69 ------------------------------------~~--------------~~~~~~~~~~~~~l~~~~kPvIAav~G~   98 (251)
T PLN02600         69 ------------------------------------EV--------------QKFVNSLRSTFSSLEALSIPTIAVVEGA   98 (251)
T ss_pred             ------------------------------------HH--------------HHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence                                                00              0112223446667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus        99 a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~  177 (251)
T PLN02600         99 ALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPA-G  177 (251)
T ss_pred             ecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeCh-h
Confidence            9999999999999999999999999999999999875 4789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.||.+++.+|+.++.....+++++
T Consensus       178 ~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  216 (251)
T PLN02600        178 EAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASG  216 (251)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHH
Confidence            999999999999999999999999999998776666553

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-41  Score=291.05  Aligned_cols=212  Identities=23%  Similarity=0.298  Sum_probs=184.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.......+       
T Consensus        14 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-------   78 (262)
T PRK05995         14 VATVTLNRPDVRNAFNETVI--------AELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD-------   78 (262)
T ss_pred             EEEEEEcCcccccCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-------
Confidence            78899999999999999998        999999999999999999999999999999999987632000000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 ..      ..               .....+..++..+.++|||+||+|+|+|
T Consensus        79 ---------------------------~~------~~---------------~~~~~~~~~~~~l~~~~kPvIaav~G~a  110 (262)
T PRK05995         79 ---------------------------DE------NR---------------ADARRLADMLRAIYRCPKPVIARVHGDA  110 (262)
T ss_pred             ---------------------------hh------hh---------------hHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence                                       00      00               0011233456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|++|.+++.++++++|..++++++++|++++++||+++|+++++++. +++
T Consensus       111 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l  189 (262)
T PRK05995        111 YAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPA-EAL  189 (262)
T ss_pred             EhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCH-HHH
Confidence            9999999999999999999999999999999998877778999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      .+.+.++++++++.||.+++.+|+.++.....++++
T Consensus       190 ~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~  225 (262)
T PRK05995        190 DAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDA  225 (262)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhh
Confidence            999999999999999999999999999876665544

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-41  Score=291.44  Aligned_cols=214  Identities=22%  Similarity=0.287  Sum_probs=185.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.| ++||+|.|++++......        
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~--------   76 (260)
T PRK05980         13 IALLTLNRPEKLNALNYALI--------DRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAA--------   76 (260)
T ss_pred             EEEEEECCcccccCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccc--------
Confidence            78899999999999999998        9999999999999999999999999 689999999876320000        


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                  ...    .+.              ..+...+..++..+..+|||+||+|+|+
T Consensus        77 ----------------------------~~~----~~~--------------~~~~~~~~~~~~~l~~~~kPvIaav~G~  110 (260)
T PRK05980         77 ----------------------------GAD----VAL--------------RDFVRRGQAMTARLEAFPKPVIAAVNGL  110 (260)
T ss_pred             ----------------------------cch----hhH--------------HHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence                                        000    000              0122223446667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus       111 a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  189 (260)
T PRK05980        111 AFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPH-E  189 (260)
T ss_pred             EEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCH-H
Confidence            99999999999999999999999999999999998754 789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.++++++++.+|.+++.+|+.+++....+++++
T Consensus       190 ~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~  228 (260)
T PRK05980        190 ELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEG  228 (260)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999998877666654

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=3.2e-41  Score=290.51  Aligned_cols=208  Identities=26%  Similarity=0.340  Sum_probs=184.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.++++++++|+++|+|||+|.|+.||+|.|++++...    ..      
T Consensus        12 v~~itlnrp~~~Nal~~~~~--------~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~------   73 (255)
T PRK09674         12 VLLLTLNRPEARNALNNALL--------TQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----DL------   73 (255)
T ss_pred             EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----ch------
Confidence            78899999999999999998        9999999999999999999999999999999999875320    00      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                          ...              +......++..+..+|||+||+|+|+|
T Consensus        74 ------------------------------------~~~--------------~~~~~~~~~~~l~~~~kPvIAav~G~a  103 (255)
T PRK09674         74 ------------------------------------AAT--------------LNDPRPQLWQRLQAFNKPLIAAVNGYA  103 (255)
T ss_pred             ------------------------------------hhh--------------HHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence                                                000              000112355677899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       104 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  182 (255)
T PRK09674        104 LGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPP-EL  182 (255)
T ss_pred             ehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HH
Confidence            999999999999999999999999999999999885 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.||.+++.+|+.+++....+++++
T Consensus       183 ~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~  220 (255)
T PRK09674        183 TLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAG  220 (255)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999998877766554

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.5e-41  Score=291.66  Aligned_cols=224  Identities=21%  Similarity=0.292  Sum_probs=191.8

Q ss_pred             CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-Cccccchhh
Q psy12573         22 IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMEL   99 (315)
Q Consensus        22 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl   99 (315)
                      .+++.+.+.. ++    ++++|||+|+++|+++..++        .+|.++++++++|+++++|||+|.| +.||+|+|+
T Consensus         8 ~~~~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl   75 (269)
T PRK06127          8 SPTGKLLAEKTGG----LGRITFNNPARHNAMSLDMW--------EALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADI   75 (269)
T ss_pred             CCCCceEEEEECC----EEEEEecCCCccCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCH
Confidence            3566666654 54    88999999999999999999        9999999999999999999999998 689999999


Q ss_pred             hHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHH
Q psy12573        100 ETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLM  179 (315)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (315)
                      +++..... .+.                                            .           ...+......++
T Consensus        76 ~~~~~~~~-~~~--------------------------------------------~-----------~~~~~~~~~~~~   99 (269)
T PRK06127         76 SQFEESRS-DAE--------------------------------------------A-----------VAAYEQAVEAAQ   99 (269)
T ss_pred             HHHhhccc-chH--------------------------------------------H-----------HHHHHHHHHHHH
Confidence            87632000 000                                            0           001111223456


Q ss_pred             HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCH
Q psy12573        180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISA  258 (315)
Q Consensus       180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a  258 (315)
                      ..+..+|||||++|+|+|+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.+++
T Consensus       100 ~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a  179 (269)
T PRK06127        100 AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDA  179 (269)
T ss_pred             HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence            678899999999999999999999999999999999999999999999998874 5789999999999999999999999


Q ss_pred             HHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        259 QDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       259 ~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +||+++|+++++++. +++.+.+.+++++++..+|.+++.+|+.+++....++++.
T Consensus       180 ~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~  234 (269)
T PRK06127        180 AEALRIGLVHRVTAA-DDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERD  234 (269)
T ss_pred             HHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            999999999999998 9999999999999999999999999999998877666543

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.3e-41  Score=283.83  Aligned_cols=210  Identities=18%  Similarity=0.212  Sum_probs=183.0

Q ss_pred             CCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCch
Q psy12573         31 EGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRP  110 (315)
Q Consensus        31 ~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~  110 (315)
                      ||.....++++|||+|+ .|+++..++        .+|.+++++++.|+++++|||||.|++||+|+|++++...  ...
T Consensus        11 ~~~~~~~i~~itlnrp~-~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~--~~~   79 (222)
T PRK05869         11 DGSQDAGLATLLLSRPP-TNALTRQVY--------REIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTL--SAQ   79 (222)
T ss_pred             cCcccCCEEEEEECCCC-CCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhcc--Chh
Confidence            34445558889999997 599999998        9999999999999999999999999999999999876320  000


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEE
Q psy12573        111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPIL  190 (315)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI  190 (315)
                                                                +..              .....+..++.++.++|||+|
T Consensus        80 ------------------------------------------~~~--------------~~~~~~~~~~~~i~~~~kPvI  103 (222)
T PRK05869         80 ------------------------------------------EAD--------------TAARVRQQAVDAVAAIPKPTV  103 (222)
T ss_pred             ------------------------------------------hHH--------------HHHHHHHHHHHHHHhCCCCEE
Confidence                                                      000              001112346677889999999


Q ss_pred             EEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCcccc
Q psy12573        191 AIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITR  269 (315)
Q Consensus       191 a~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~  269 (315)
                      |+|+|+|+|||++|+++||+++++++++|++||.++|++|.+++ ..+++++|..++++++++|++++++||+++|++++
T Consensus       104 Aav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~  183 (222)
T PRK05869        104 AAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDE  183 (222)
T ss_pred             EEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCE
Confidence            99999999999999999999999999999999999999998854 68999999999999999999999999999999999


Q ss_pred             ccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        270 VVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       270 v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      +++. +++.+.+.+++++|+..||.+++.+|+.+++..+
T Consensus       184 vv~~-~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~~  221 (222)
T PRK05869        184 MVAP-DDVYDAAAAWARRFLDGPPHALAAAKAGISDVYE  221 (222)
T ss_pred             eeCc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            9999 9999999999999999999999999999998764

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.3e-41  Score=289.68  Aligned_cols=209  Identities=19%  Similarity=0.224  Sum_probs=182.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||||+. |+++..++        .+|.+++.+++.|+++++|||+|.| ++||+|.|++++...  +..      
T Consensus        13 v~~itlnrp~~-Nal~~~~~--------~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~--~~~------   75 (258)
T PRK09076         13 VAILTLNNPPA-NTWTADSL--------QALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG--DKA------   75 (258)
T ss_pred             EEEEEECCCCc-CCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc--Chh------
Confidence            78899999975 99999998        9999999999999999999999999 579999999875320  000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                          +..              .+...+..++..+.++||||||+|+|+
T Consensus        76 ------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~  105 (258)
T PRK09076         76 ------------------------------------VAR--------------EMARRFGEAFEALSAFRGVSIAAINGY  105 (258)
T ss_pred             ------------------------------------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence                                                000              011123346667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.++ ++++++++|..++++++++|+.++++||+++|+++++++. +
T Consensus       106 a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  184 (258)
T PRK09076        106 AMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEK-G  184 (258)
T ss_pred             EecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCc-h
Confidence            9999999999999999999999999999999999874 5789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++++..+|.+++.+|++++.....++++.
T Consensus       185 ~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~  223 (258)
T PRK09076        185 EAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAA  223 (258)
T ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999998776666543

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-41  Score=292.87  Aligned_cols=231  Identities=17%  Similarity=0.220  Sum_probs=190.8

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+++|++|..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++++.
T Consensus         6 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~   73 (272)
T PRK06142          6 ESFTVELADH----VAQVTLNRPGKGNAMNPAFW--------SELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMA   73 (272)
T ss_pred             ceEEEEecCC----EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHh
Confidence            3444443 55    78899999999999999998        99999999999999999999999999999999998764


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      .......                                 ...   ..-+..           ........+..++..+.
T Consensus        74 ~~~~~~~---------------------------------~~~---~~~~~~-----------~~~~~~~~~~~~~~~i~  106 (272)
T PRK06142         74 GVFGQLG---------------------------------KDG---LARPRT-----------DLRREILRLQAAINAVA  106 (272)
T ss_pred             hhccccc---------------------------------ccc---cccchH-----------HHHHHHHHHHHHHHHHH
Confidence            2000000                                 000   000000           00112233455677888


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      .+|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|..++ +++++++|..++++++++|++++++||+
T Consensus       107 ~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~  186 (272)
T PRK06142        107 DCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE  186 (272)
T ss_pred             hCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHH
Confidence            999999999999999999999999999999999999999999999998754 7899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|||++++++.+++.+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus       187 ~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~  238 (272)
T PRK06142        187 KIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADG  238 (272)
T ss_pred             HcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            9999999998437899999999999999999999999999998776666554

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.3e-41  Score=289.27  Aligned_cols=218  Identities=19%  Similarity=0.289  Sum_probs=188.6

Q ss_pred             CCceEEeC--CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhH
Q psy12573         24 DNCIIVGE--GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET  101 (315)
Q Consensus        24 ~~~~~~~~--g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~  101 (315)
                      ++.+.+..  ++    ++++|||+|+++|+++..++        .+|.++++++++|+++|+|||+|.|+.||+|.|+++
T Consensus         6 ~~~~~~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~   73 (261)
T PRK08138          6 TDVVLLERPADG----VALLRLNRPEARNALNMEVR--------QQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKE   73 (261)
T ss_pred             CCCEEEEEccCC----EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHH
Confidence            45555543  43    78899999999999999998        999999999999999999999999999999999986


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573        102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS  181 (315)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (315)
                      +...    .                                          +..              .+......++..
T Consensus        74 ~~~~----~------------------------------------------~~~--------------~~~~~~~~~~~~   93 (261)
T PRK08138         74 FATA----G------------------------------------------AIE--------------MYLRHTERYWEA   93 (261)
T ss_pred             Hhcc----c------------------------------------------hhH--------------HHHHHHHHHHHH
Confidence            5320    0                                          000              001112345667


Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      +..+|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++|
T Consensus        94 l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~e  173 (261)
T PRK08138         94 IAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPE  173 (261)
T ss_pred             HHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence            7899999999999999999999999999999999999999999999999885 578999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      |+++|+|+++++. +++.+.+.++++++++.||.+++.+|+.++.....+++++
T Consensus       174 A~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~  226 (261)
T PRK08138        174 ALAIGLVSEVVED-EQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAA  226 (261)
T ss_pred             HHHCCCCcEecCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999 9999999999999999999999999999998776666543

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=5.3e-41  Score=289.53  Aligned_cols=212  Identities=22%  Similarity=0.288  Sum_probs=183.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.++++++++|+ +++|||+|.|+.||+|.|++++.......        
T Consensus         9 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~--------   71 (256)
T TIGR02280         9 VARLTLNRPDKLNSFTAEMH--------LELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGA--------   71 (256)
T ss_pred             EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccc--------
Confidence            78889999999999999998        99999999999998 99999999999999999998763200000        


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                        .++.   .          .+...+..+++.+..+|||+||+|+|+|
T Consensus        72 ----------------------------------~~~~---~----------~~~~~~~~~~~~l~~~~kPvIaav~G~a  104 (256)
T TIGR02280        72 ----------------------------------PDLG---R----------TIETFYNPLVRRLRALPLPVVCAVNGVA  104 (256)
T ss_pred             ----------------------------------hhHH---H----------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                              0000   0          0001123355678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|++++++||+++|+|+++++. ++
T Consensus       105 ~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  183 (256)
T TIGR02280       105 AGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDD-AA  183 (256)
T ss_pred             ehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HH
Confidence            999999999999999999999999999999999875 4689999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++++..||.+++.+|+.++.....+++++
T Consensus       184 l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~  221 (256)
T TIGR02280       184 LMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQ  221 (256)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            99999999999999999999999999998776666543

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-41  Score=290.32  Aligned_cols=211  Identities=18%  Similarity=0.152  Sum_probs=181.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++.++++|+++|+|||+|.|+.||+|.|++++....  ...      
T Consensus         9 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~--~~~------   72 (255)
T PRK06563          9 VLLIGLDRPAKRNAFDSAML--------DDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKL--AAG------   72 (255)
T ss_pred             EEEEEECCcccccCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhcc--ccc------
Confidence            78899999999999999999        99999999999999999999999999999999998763200  000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 ...+        . .          ...   ..+...+..+||||||+|+|+|
T Consensus        73 ---------------------------~~~~--------~-~----------~~~---~~~~~~l~~~~kPvIAav~G~a  103 (255)
T PRK06563         73 ---------------------------GFPF--------P-E----------GGI---DPWGTVGRRLSKPLVVAVQGYC  103 (255)
T ss_pred             ---------------------------hhhh--------h-h----------hhh---HHHHHHHhcCCCCEEEEEcCee
Confidence                                       0000        0 0          000   1112246789999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++||+++|+|+++++. ++
T Consensus       104 ~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~  182 (255)
T PRK06563        104 LTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GE  182 (255)
T ss_pred             ecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HH
Confidence            999999999999999999999999999999999875 4689999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.||.+++.+|+.++.....+++++
T Consensus       183 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~  220 (255)
T PRK06563        183 QLERAIELAERIARAAPLGVQATLASARAAVREGEAAA  220 (255)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999998766666543

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=7.7e-41  Score=289.31  Aligned_cols=210  Identities=24%  Similarity=0.315  Sum_probs=185.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.| +.||+|.|++++...  ...      
T Consensus        14 v~~itlnrp~~~Nal~~~~~--------~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~--~~~------   77 (260)
T PRK05809         14 IAVVTINRPKALNALNSETL--------KELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL--NEE------   77 (260)
T ss_pred             EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc--ChH------
Confidence            78899999999999999998        9999999999999999999999999 899999999876320  000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                          +..              .+......++..+.++|||+|++|+|+
T Consensus        78 ------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~  107 (260)
T PRK05809         78 ------------------------------------EGR--------------KFGLLGNKVFRKLENLDKPVIAAINGF  107 (260)
T ss_pred             ------------------------------------HHH--------------HHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence                                                000              011112345667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|...+++++++|+.++++||+++|+++++++. +
T Consensus       108 a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  186 (260)
T PRK05809        108 ALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEP-E  186 (260)
T ss_pred             eecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-H
Confidence            9999999999999999999999999999999999885 4789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++++..||.+++.+|+.+++....+++++
T Consensus       187 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  225 (260)
T PRK05809        187 KLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTA  225 (260)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999998877666554

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.3e-41  Score=288.95  Aligned_cols=210  Identities=22%  Similarity=0.276  Sum_probs=184.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++.+++.|+++++|||+|.|+ .||+|.|++++...  +..      
T Consensus        14 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~--~~~------   77 (260)
T PRK07657         14 VVKITLNRPRAANALSLALL--------EELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM--NEE------   77 (260)
T ss_pred             EEEEEEeCCcccCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC--Chh------
Confidence            78889999999999999999        99999999999999999999999995 89999999875320  000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                          +..              .+...+..++..+..+|||+||+|+|+
T Consensus        78 ------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~  107 (260)
T PRK07657         78 ------------------------------------QVR--------------HAVSLIRTTMEMVEQLPQPVIAAINGI  107 (260)
T ss_pred             ------------------------------------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence                                                000              111223445667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|+++ ++++++++|...+++++++|++++++||+++|+++++++. +
T Consensus       108 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  186 (260)
T PRK07657        108 ALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPA-H  186 (260)
T ss_pred             eechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-H
Confidence            9999999999999999999999999999999999885 5789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++++..+|.+++.+|+.++.....+++++
T Consensus       187 ~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~  225 (260)
T PRK07657        187 LLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTG  225 (260)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            999999999999999999999999999998776666543

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-40  Score=288.32  Aligned_cols=213  Identities=23%  Similarity=0.287  Sum_probs=183.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++ |+++++|||+|.|+.||+|.|++++......         
T Consensus        14 v~~itlnrp~~~Nal~~~~~--------~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~---------   75 (262)
T PRK08140         14 VATLTLNRPDKLNSFTREMH--------RELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGG---------   75 (262)
T ss_pred             EEEEEecCCcccCCCCHHHH--------HHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccc---------
Confidence            78899999999999999998        99999999999 9999999999999999999999875320000         


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                ...      ++..             .+...+..++..+.++|||+||+|+|+|
T Consensus        76 --------------------------~~~------~~~~-------------~~~~~~~~~~~~l~~~~kPvIaav~G~a  110 (262)
T PRK08140         76 --------------------------AMP------DLGE-------------SIETFYNPLVRRLRALPLPVIAAVNGVA  110 (262)
T ss_pred             --------------------------cch------hhHH-------------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                      000      0000             0111123456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       111 ~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  189 (262)
T PRK08140        111 AGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDD-AA  189 (262)
T ss_pred             ehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HH
Confidence            999999999999999999999999999999999875 4789999999999999999999999999999999999999 89


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.||.++..+|+.++.....+++++
T Consensus       190 l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~  227 (262)
T PRK08140        190 LADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQ  227 (262)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHH
Confidence            99999999999999999999999999998776666543

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-40  Score=287.59  Aligned_cols=209  Identities=22%  Similarity=0.290  Sum_probs=181.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.| +.||+|.|++++....  .+      
T Consensus        18 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~--~~------   81 (262)
T PRK06144         18 IARITFNRPAARNAMTWAMY--------EGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS--TA------   81 (262)
T ss_pred             EEEEEecCCcccCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc--ch------
Confidence            88899999999999999888        9999999999999999999999998 5899999998763200  00      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                   .      +..              .+...+..++..+.++|||+||+|+|+
T Consensus        82 -----------------------------~------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~  112 (262)
T PRK06144         82 -----------------------------E------DAV--------------AYERRIDRVLGALEQLRVPTIAAIAGA  112 (262)
T ss_pred             -----------------------------h------HHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence                                         0      000              011122345667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCcc-CCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGAR-HGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN  274 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~-~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~  274 (315)
                      |+|||++|+++||+++++++++|++||.+ +|++|.+++ +++++++|..++++++++|+.++++||+++|+|+++++. 
T Consensus       113 a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-  191 (262)
T PRK06144        113 CVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVED-  191 (262)
T ss_pred             eeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-
Confidence            99999999999999999999999999996 999998754 789999999999999999999999999999999999999 


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChh
Q psy12573        275 EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIE  312 (315)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~  312 (315)
                      +++.+.+.+++++|++.||.+++.+|+.++......++
T Consensus       192 ~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~  229 (262)
T PRK06144        192 AALDARADALAELLAAHAPLTLRATKEALRRLRREGLP  229 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHH
Confidence            99999999999999999999999999999887655443

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=1.4e-40  Score=287.52  Aligned_cols=218  Identities=25%  Similarity=0.363  Sum_probs=187.8

Q ss_pred             CCCceEEeC--CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhh
Q psy12573         23 PDNCIIVGE--GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE  100 (315)
Q Consensus        23 ~~~~~~~~~--g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~  100 (315)
                      +++.+.+..  ++    ++.+|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|++||+|.|++
T Consensus         7 ~~~~i~~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~   74 (265)
T PLN02888          7 SENLILVPKSRNG----IATITINRPKALNALTRPMM--------VELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLT   74 (265)
T ss_pred             CCCeEEEEeccCC----EEEEEEcCCCcccCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHH
Confidence            456666652  44    78899999999999999998        99999999999999999999999999999999998


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML  180 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (315)
                      ++....                                     .+       +...             .    ....+.
T Consensus        75 ~~~~~~-------------------------------------~~-------~~~~-------------~----~~~~~~   93 (265)
T PLN02888         75 AAEEVF-------------------------------------KG-------DVKD-------------V----ETDPVA   93 (265)
T ss_pred             HHHhhc-------------------------------------cc-------hhhH-------------H----HHHHHH
Confidence            652100                                     00       0000             0    012344


Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.++|||+||+|+|+|+|+|++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++
T Consensus        94 ~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~  173 (265)
T PLN02888         94 QMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAE  173 (265)
T ss_pred             HHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHH
Confidence            57789999999999999999999999999999999999999999999999875 47899999999999999999999999


Q ss_pred             HHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ||+++|+|+++++. +++.+.+.++++++++.+|.+++.+|+.++.....+++++
T Consensus       174 eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  227 (265)
T PLN02888        174 TAERWGLVNHVVEE-SELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHA  227 (265)
T ss_pred             HHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999 9999999999999999999999999999998776666543

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-40  Score=287.22  Aligned_cols=213  Identities=23%  Similarity=0.309  Sum_probs=186.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||+|+++|+++..++        .+|.++++++++|+++|+|||+|.|+.||+|.|++++.......+       
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~-------   77 (260)
T PRK07511         13 TLVLTLSNPGARNALHPDMY--------AAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPP-------   77 (260)
T ss_pred             EEEEEECCcccccCCCHHHH--------HHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccc-------
Confidence            78899999999999999998        999999999999999999999999999999999987642000000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +             ....+...+..++..+.++|||+||+|+|+|
T Consensus        78 -----------------------------------~-------------~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a  109 (260)
T PRK07511         78 -----------------------------------S-------------VQAASIDGLHDWIRAIRAFPKPVIAAVEGAA  109 (260)
T ss_pred             -----------------------------------h-------------hHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence                                               0             0001222344567788899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++||+++|+++++++. ++
T Consensus       110 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~  188 (260)
T PRK07511        110 AGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEP-GQ  188 (260)
T ss_pred             ehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hH
Confidence            999999999999999999999999999999999875 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.+|.++..+|+.++.....+++++
T Consensus       189 ~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~  226 (260)
T PRK07511        189 ALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQ  226 (260)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            99999999999999999999999999998776666543

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=1.4e-40  Score=286.51  Aligned_cols=203  Identities=23%  Similarity=0.277  Sum_probs=178.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.| +.||+|+|++++...   ..      
T Consensus        12 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~---~~------   74 (256)
T TIGR03210        12 IAWIMINRPAKMNAFRGQTC--------DELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG---YD------   74 (256)
T ss_pred             EEEEEEcCCccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc---cc------
Confidence            78899999999999999998        9999999999999999999999999 589999999865210   00      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                  ..        ..              +...+..++..+..+|||+||+|+|+
T Consensus        75 ----------------------------~~--------~~--------------~~~~~~~~~~~l~~~~kPvIaav~G~  104 (256)
T TIGR03210        75 ----------------------------GR--------GT--------------IGLPMEELHSAIRDVPKPVIARVQGY  104 (256)
T ss_pred             ----------------------------ch--------hH--------------HHHHHHHHHHHHHhCCCCEEEEECCE
Confidence                                        00        00              00012345667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.. +++.+++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus       105 a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~  183 (256)
T TIGR03210       105 AIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPH-D  183 (256)
T ss_pred             EehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCH-H
Confidence            999999999999999999999999999999998554 56789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      ++.+.+.+++++|++.||.+++.+|++++....
T Consensus       184 ~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~  216 (256)
T TIGR03210       184 QLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTA  216 (256)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999987643

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=8.5e-41  Score=290.83  Aligned_cols=222  Identities=23%  Similarity=0.301  Sum_probs=185.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||||+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|++++........       
T Consensus        18 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~-------   82 (275)
T PLN02664         18 VFHLNLNRPSQRNALSLDFF--------TEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS-------   82 (275)
T ss_pred             EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccc-------
Confidence            78899999999999999998        999999999999999999999999999999999987642000000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 +.      |...       .....+.+...+..++..+.++|||+||+|+|+|
T Consensus        83 ---------------------------~~------~~~~-------~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  122 (275)
T PLN02664         83 ---------------------------SG------DRGR-------SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGAC  122 (275)
T ss_pred             ---------------------------cc------cchh-------hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence                                       00      0000       0000011222334567778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+.++ +++++++|..++++++++|+.++++||+++|||++++++.++
T Consensus       123 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~  202 (275)
T PLN02664        123 IGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKED  202 (275)
T ss_pred             ccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhH
Confidence            9999999999999999999999999999999998754 689999999999999999999999999999999999983278


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|+..+|.+++.+|+.+++....+++++
T Consensus       203 l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~  240 (275)
T PLN02664        203 LDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQG  240 (275)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999998776666553

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-40  Score=286.24  Aligned_cols=216  Identities=25%  Similarity=0.333  Sum_probs=183.9

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHH
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETL  102 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~  102 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++.+++.|+++++|||+|.| +.||+|.|++++
T Consensus         4 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~   71 (259)
T PRK06494          4 PFSTVERKGH----VTIVTLNRPEVMNALHLDAH--------FELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQ   71 (259)
T ss_pred             ceeEEEeECC----EEEEEEcCccccCCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhH
Confidence            3444443 55    78899999999999999998        9999999999999999999999998 589999999875


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ....  ..                                  +.      .     ..         .+    ..+ ..+
T Consensus        72 ~~~~--~~----------------------------------~~------~-----~~---------~~----~~~-~~~   90 (259)
T PRK06494         72 AAGG--KR----------------------------------GW------P-----ES---------GF----GGL-TSR   90 (259)
T ss_pred             hhcC--cc----------------------------------hh------h-----hH---------HH----HHH-HHH
Confidence            3200  00                                  00      0     00         00    111 123


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++||||||+|+|+|+|||++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++||
T Consensus        91 ~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA  170 (259)
T PRK06494         91 FDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREG  170 (259)
T ss_pred             hcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHH
Confidence            479999999999999999999999999999999999999999999999875 5789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +++|+|+++++. +++.+.+.+++++++..||.+++.+|+.+++....+++++
T Consensus       171 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  222 (259)
T PRK06494        171 LELGFVNEVVPA-GELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEA  222 (259)
T ss_pred             HHcCCCcEecCH-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHH
Confidence            999999999999 9999999999999999999999999999998776666543

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-40  Score=287.58  Aligned_cols=211  Identities=19%  Similarity=0.234  Sum_probs=181.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++.+++.|+++++|||+|.|+.||+|.|++++........       
T Consensus        15 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~-------   79 (262)
T PRK07468         15 VATLTLNRPEKHNALSARMI--------AELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADR-------   79 (262)
T ss_pred             EEEEEEcCcccccCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccch-------
Confidence            78899999999999999998        999999999999999999999999999999999987632000000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 ...                     ......+..++..+..+|||+||+|+|+|
T Consensus        80 ---------------------------~~~---------------------~~~~~~~~~~~~~l~~~~kPvIaav~G~a  111 (262)
T PRK07468         80 ---------------------------ATR---------------------IEEARRLAMMLKALNDLPKPLIGRIQGQA  111 (262)
T ss_pred             ---------------------------hhH---------------------HHHHHHHHHHHHHHHcCCCCEEEEECCEE
Confidence                                       000                     00111233466778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|++|++++..+.+++|..++++++++|++++++||+++|+|+++++. +++
T Consensus       112 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l  190 (262)
T PRK07468        112 FGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERL  190 (262)
T ss_pred             EhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhhccHHHHHHHHHhCCccCHHHHHHcCCcceecCH-HHH
Confidence            9999999999999999999999999999999998865556677999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIE  312 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~  312 (315)
                      .+.+.++++++++.+|.++..+|+++++.....++
T Consensus       191 ~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~  225 (262)
T PRK07468        191 DAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDE  225 (262)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChH
Confidence            99999999999999999999999999876544433

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.4e-40  Score=285.86  Aligned_cols=210  Identities=21%  Similarity=0.264  Sum_probs=183.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+. |+++..++        .+|.+++.+++.|+++++|||+|.|+.||+|.|++++....  ..       
T Consensus        12 v~~itl~rp~~-Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~--~~-------   73 (257)
T PRK07658         12 VAVITLNHPPA-NALSSQVL--------HELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVT--EA-------   73 (257)
T ss_pred             EEEEEECCCCC-CCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccC--ch-------
Confidence            78899999975 99999998        99999999999999999999999999999999998763200  00       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                        -+..              .+......++..+..+|||+||+|+|+|
T Consensus        74 ----------------------------------~~~~--------------~~~~~~~~~~~~l~~~~kpvIAav~G~a  105 (257)
T PRK07658         74 ----------------------------------EQAT--------------ELAQLGQVTFERVEKFSKPVIAAIHGAA  105 (257)
T ss_pred             ----------------------------------hhHH--------------HHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence                                              0000              0111223456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+++++++. ++
T Consensus       106 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  184 (257)
T PRK07658        106 LGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE-ET  184 (257)
T ss_pred             eeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hH
Confidence            999999999999999999999999999999999885 4789999999999999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.+|.+++.+|+.++.....+++++
T Consensus       185 l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~  222 (257)
T PRK07658        185 LLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEG  222 (257)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999998776666553

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-40  Score=285.74  Aligned_cols=201  Identities=18%  Similarity=0.254  Sum_probs=178.6

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++.....          
T Consensus        16 v~~itlnrp~~~Nal~~~~~--------~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~----------   77 (251)
T PRK06023         16 VQVIRFNRPEKKNAITRAMY--------ATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM----------   77 (251)
T ss_pred             EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc----------
Confidence            78899999999999999998        999999999999999999999999999999999987632000          


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                .+..+                       ...+..++..+.++|||+||+|+|+|
T Consensus        78 --------------------------~~~~~-----------------------~~~~~~~~~~l~~~~kPvIAav~G~a  108 (251)
T PRK06023         78 --------------------------GGTSF-----------------------GSEILDFLIALAEAEKPIVSGVDGLA  108 (251)
T ss_pred             --------------------------cchhh-----------------------HHHHHHHHHHHHhCCCCEEEEeCCce
Confidence                                      00000                       00122355678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+.++++||+++|+++++++. ++
T Consensus       109 ~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  187 (251)
T PRK06023        109 IGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EA  187 (251)
T ss_pred             ecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HH
Confidence            9999999999999999999999999999999998854 689999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                      +.+.+.+++++|+..||.+++.+|+.++..
T Consensus       188 l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~  217 (251)
T PRK06023        188 VEAETLKAAEELAAKPPQALQIARDLMRGP  217 (251)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999865

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-40  Score=285.93  Aligned_cols=214  Identities=19%  Similarity=0.255  Sum_probs=185.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|++|..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++.....          
T Consensus        12 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~----------   73 (255)
T PRK07260         12 LATLTLNRPEVSNGFNIPMC--------QEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVD----------   73 (255)
T ss_pred             EEEEEeCCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhcc----------
Confidence            78899999999999999999        999999999999999999999999999999999987642000          


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 +.      +....           ..+...+..++..+.++|||+||+|+|+|
T Consensus        74 ---------------------------~~------~~~~~-----------~~~~~~~~~~~~~l~~~~kPvIaav~G~a  109 (255)
T PRK07260         74 ---------------------------ED------DVQSL-----------VKIAELVNEISFAIKQLPKPVIMCVDGAV  109 (255)
T ss_pred             ---------------------------cc------chhhH-----------HHHHHHHHHHHHHHHcCCCCEEEEecCee
Confidence                                       00      00000           01112234566678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|..++ +++++++|..++++++++|++++++||+++|+|+++++. ++
T Consensus       110 ~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~  188 (255)
T PRK07260        110 AGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAES-EK  188 (255)
T ss_pred             ehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCH-hH
Confidence            9999999999999999999999999999999998754 689999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.+|.+++.+|+.++.....+++++
T Consensus       189 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~  226 (255)
T PRK07260        189 LEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDY  226 (255)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHH
Confidence            99999999999999999999999999998876666543

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-40  Score=286.48  Aligned_cols=213  Identities=23%  Similarity=0.282  Sum_probs=182.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++....   .       
T Consensus        15 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~-------   76 (263)
T PRK07799         15 TLIVTMNRPEARNALSTEML--------RIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKP---P-------   76 (263)
T ss_pred             EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhcc---c-------
Confidence            78899999999999999999        99999999999999999999999999999999998764200   0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 +..+      ..  ..       ..  ...+..+ ..+..+||||||+|+|+|
T Consensus        77 ---------------------------~~~~------~~--~~-------~~--~~~~~~~-~~~~~~~kpvIaav~G~a  111 (263)
T PRK07799         77 ---------------------------GDSF------KD--GS-------YD--PSRIDAL-LKGRRLTKPLIAAVEGPA  111 (263)
T ss_pred             ---------------------------cchh------hh--hh-------hh--hhHHHHH-HHHhcCCCCEEEEECCeE
Confidence                                       0000      00  00       00  0011122 246789999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       112 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~  190 (263)
T PRK07799        112 IAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQ  190 (263)
T ss_pred             eccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCc-ch
Confidence            999999999999999999999999999999999875 4689999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.||.+++.+|+.++.....+++++
T Consensus       191 l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~  228 (263)
T PRK07799        191 ALDKALELAELINANGPLAVQAILRTIRETEGMHENEA  228 (263)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999998776666543

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-40  Score=284.89  Aligned_cols=208  Identities=24%  Similarity=0.294  Sum_probs=180.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++....   .       
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~---~-------   74 (254)
T PRK08259         13 VTTVILNRPEVRNAVDGPTA--------AALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR---G-------   74 (254)
T ss_pred             EEEEEecCCccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc---c-------
Confidence            88899999999999999999        99999999999999999999999999999999998753200   0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  ...      .   ..   .    ..      ........+|||+|++|+|+|
T Consensus        75 ----------------------------~~~------~---~~---~----~~------~~~~~~~~~~kPvIaav~G~a  104 (254)
T PRK08259         75 ----------------------------NRL------H---PS---G----DG------PMGPSRMRLSKPVIAAVSGYA  104 (254)
T ss_pred             ----------------------------hhh------h---hh---h----cc------hhhhHHhcCCCCEEEEECCEE
Confidence                                        000      0   00   0    00      000112368999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|..+ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       105 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~  183 (254)
T PRK08259        105 VAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPK-GQ  183 (254)
T ss_pred             EhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hH
Confidence            999999999999999999999999999999998874 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       184 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~  221 (254)
T PRK08259        184 ARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAA  221 (254)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999998776666654

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-40  Score=287.68  Aligned_cols=214  Identities=23%  Similarity=0.291  Sum_probs=185.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++......         
T Consensus        27 v~~itlnrp~~~Nal~~~~~--------~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~---------   89 (277)
T PRK08258         27 VATITLNRPERKNPLTFESY--------AELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTK---------   89 (277)
T ss_pred             EEEEEeCCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccc---------
Confidence            88899999999999999988        9999999999999999999999999999999999876320000         


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  .      +..           +...+...+..++..+.++||||||+|+|+|
T Consensus        90 ----------------------------~------~~~-----------~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a  124 (277)
T PRK08258         90 ----------------------------M------DMP-----------ELLAFTRMTGDLVKAMRACPQPIIAAVDGVC  124 (277)
T ss_pred             ----------------------------c------Chh-----------HHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                        0      000           0001122234566788899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCC-Cc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFC-ST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~-~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      +|||++|+++||+++++++++|++||.++|++| ++ +.+++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus       125 ~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~  203 (277)
T PRK08258        125 AGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEP-E  203 (277)
T ss_pred             ehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCH-H
Confidence            999999999999999999999999999999995 55 45789999999999999999999999999999999999998 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|+..||.+++.+|+.++.....++++.
T Consensus       204 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  242 (277)
T PRK08258        204 ELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEA  242 (277)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHH
Confidence            999999999999999999999999999998877666553

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-40  Score=284.15  Aligned_cols=206  Identities=23%  Similarity=0.310  Sum_probs=179.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++.+++.|+++++|||+|.|+.||+|.|++++...  ..+       
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~--~~~-------   75 (254)
T PRK08252         13 VLIITINRPEARNAVNAAVA--------QGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG--ERP-------   75 (254)
T ss_pred             EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc--cch-------
Confidence            78899999999999999999        9999999999999999999999999999999999876320  000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  ..+          ..         .    +..++  ...+|||||++|+|+|
T Consensus        76 ----------------------------~~~----------~~---------~----~~~~~--~~~~~kPvIaav~G~a  102 (254)
T PRK08252         76 ----------------------------SIP----------GR---------G----FGGLT--ERPPRKPLIAAVEGYA  102 (254)
T ss_pred             ----------------------------hhh----------HH---------H----HHHHH--HhcCCCCEEEEECCEE
Confidence                                        000          00         0    01111  1468999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|++++++||+++|+++++++. ++
T Consensus       103 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  181 (254)
T PRK08252        103 LAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEP-GQ  181 (254)
T ss_pred             ehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCc-ch
Confidence            999999999999999999999999999999999875 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++++..||.+++.+|++++.....+++++
T Consensus       182 l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~  219 (254)
T PRK08252        182 ALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEM  219 (254)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999998766666543

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-40  Score=288.04  Aligned_cols=216  Identities=22%  Similarity=0.300  Sum_probs=182.6

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++...    +..     
T Consensus        20 v~~itlnrp~~~Nal~~~~~--------~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~----~~~-----   82 (276)
T PRK05864         20 IALITLNRPERMNSMAFDVM--------VPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVV----PHV-----   82 (276)
T ss_pred             EEEEEecCCccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcc----ccc-----
Confidence            78899999999999999998        9999999999999999999999999999999999865310    000     


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                .+  .   .+...           .......+..++..+.++|||||++|+|+|
T Consensus        83 --------------------------~~--~---~~~~~-----------~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  120 (276)
T PRK05864         83 --------------------------EG--L---TRPTY-----------ALRSMELLDDVILALRRLHQPVIAAVNGPA  120 (276)
T ss_pred             --------------------------cc--c---cchhH-----------HHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence                                      00  0   00000           001112234456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCC-Cch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFC-STP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~-~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      +|||++|+++||+++++++++|++||.++|++| .++ .+++++++|..++++++++|++++++||+++|+|+++++. +
T Consensus       121 ~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  199 (276)
T PRK05864        121 IGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-E  199 (276)
T ss_pred             ehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCH-H
Confidence            999999999999999999999999999999997 554 4679999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCC-Chhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSL-NIEE  313 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~-~l~~  313 (315)
                      ++.+.+.+++++|+..||.+++.+|+.++..... ++++
T Consensus       200 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  238 (276)
T PRK05864        200 QLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEA  238 (276)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHH
Confidence            9999999999999999999999999999876554 4543

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.1e-40  Score=284.49  Aligned_cols=208  Identities=21%  Similarity=0.217  Sum_probs=180.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.++++.++.|+++++|||+|.|+.||+|.|++++.....  .       
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~--~-------   75 (249)
T PRK05870         13 VALITVNDPDRRNAVTAEMS--------AQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPG--R-------   75 (249)
T ss_pred             EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccc--c-------
Confidence            78899999999999999998        999999999999999999999999999999999987642000  0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +..              .....+...+..+.++|||+|++|+|+|
T Consensus        76 -----------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIaav~G~a  106 (249)
T PRK05870         76 -----------------------------------PAE--------------DGLRRIYDGFLAVASCPLPTIAAVNGAA  106 (249)
T ss_pred             -----------------------------------chH--------------HHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence                                               000              0011122345567899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+.++++||+++|++++++   ++
T Consensus       107 ~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~  183 (249)
T PRK05870        107 VGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA---DD  183 (249)
T ss_pred             EchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH---hh
Confidence            9999999999999999999999999999999998754 6799999999999999999999999999999999999   46


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC-CChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMS-LNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~-~~l~~~  314 (315)
                      +.+.+.++++++++.||.+++.+|+.+++... .+++++
T Consensus       184 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~  222 (249)
T PRK05870        184 PVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAA  222 (249)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHH
Confidence            88999999999999999999999999998766 566543

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-40  Score=287.24  Aligned_cols=204  Identities=19%  Similarity=0.215  Sum_probs=179.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++.....+ +.      
T Consensus        22 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~------   86 (268)
T PRK07327         22 VLEIVLNGPGALNAADARMH--------RELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADD-FE------   86 (268)
T ss_pred             EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCc-HH------
Confidence            78899999999999999998        9999999999999999999999999999999999876320000 00      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                            ..           .........++..+..+|||+||+|+|+|
T Consensus        87 --------------------------------------~~-----------~~~~~~~~~~~~~l~~~~kPvIAav~G~a  117 (268)
T PRK07327         87 --------------------------------------VR-----------ARVWREARDLVYNVINCDKPIVSAIHGPA  117 (268)
T ss_pred             --------------------------------------HH-----------HHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence                                                  00           01112223456677899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+.+ .+++++++|..++++++++|++++++||+++|+|+++++. ++
T Consensus       118 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~  196 (268)
T PRK07327        118 VGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DE  196 (268)
T ss_pred             eehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCH-HH
Confidence            999999999999999999999999999999998874 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                      +.+.+.+++++|++.||.+++.+|+.++..
T Consensus       197 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~  226 (268)
T PRK07327        197 LLPKALEVAERLAAGSQTAIRWTKYALNNW  226 (268)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999865

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=3.8e-40  Score=284.79  Aligned_cols=208  Identities=23%  Similarity=0.364  Sum_probs=180.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+ .|+++..++        .+|.+++++++.|+++++|||+|.| ++||+|.|++++....  ..      
T Consensus        13 v~~itlnrp~-~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~--~~------   75 (261)
T PRK03580         13 ILEITLDRPK-ANAIDAKTS--------FAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE--AP------   75 (261)
T ss_pred             EEEEEECCcc-ccCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC--cc------
Confidence            8889999994 699999998        9999999999999999999999999 5899999998763200  00      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                  ..      ++  . .          .    ....+..+..+|||+||+|+|+
T Consensus        76 ----------------------------~~------~~--~-~----------~----~~~~~~~l~~~~kPvIaav~G~  104 (261)
T PRK03580         76 ----------------------------DA------DF--G-P----------G----GFAGLTEIFDLDKPVIAAVNGY  104 (261)
T ss_pred             ----------------------------hh------hh--h-h----------h----hhHHHHHHHhCCCCEEEEECCe
Confidence                                        00      00  0 0          0    0113446778999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|++++ +.+++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus       105 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  183 (261)
T PRK03580        105 AFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-A  183 (261)
T ss_pred             eehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCH-h
Confidence            99999999999999999999999999999999998754 689999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.+|.+++.+|+.++.....+++++
T Consensus       184 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  222 (261)
T PRK03580        184 ELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEA  222 (261)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999998776666543

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=5.8e-40  Score=281.58  Aligned_cols=207  Identities=19%  Similarity=0.224  Sum_probs=184.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      +++++||+|+++|+++..++        .+|.+++.+++.|+++|+|||+|+|+.||+|+|++++....           
T Consensus        15 v~~i~ln~p~~~Nal~~~~~--------~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-----------   75 (249)
T PRK07110         15 IAQVTMQDRVNKNAFSDELC--------DQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQ-----------   75 (249)
T ss_pred             EEEEEecCCCccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhcc-----------
Confidence            78899999999999999998        99999999999999999999999999999999998653200           


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                .+       +.               .+..  ..++..+.++|||+||+|+|+|
T Consensus        76 --------------------------~~-------~~---------------~~~~--~~~~~~l~~~~kPvIaav~G~a  105 (249)
T PRK07110         76 --------------------------TG-------KG---------------TFTE--ANLYSLALNCPIPVIAAMQGHA  105 (249)
T ss_pred             --------------------------ch-------hh---------------hHhh--HHHHHHHHcCCCCEEEEecCce
Confidence                                      00       00               0000  2355678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|..+ .+++++++|..++++++++|++++++||+++|+++++++. ++
T Consensus       106 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~  184 (249)
T PRK07110        106 IGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPR-AE  184 (249)
T ss_pred             echHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HH
Confidence            999999999999999999999999999999999875 5789999999999999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.||.+++.+|+.+++....++++.
T Consensus       185 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  222 (249)
T PRK07110        185 VLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEV  222 (249)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHH
Confidence            99999999999999999999999999998877776654

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.8e-40  Score=282.61  Aligned_cols=209  Identities=24%  Similarity=0.300  Sum_probs=180.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+ .|++++.++        .+|.++++++++|+++|+|||+|.|+.||+|+|++++...... +       
T Consensus        14 v~~itlnrp~-~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~-~-------   76 (257)
T PRK06495         14 VAVVTLDNPP-VNALSRELR--------DELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKG-P-------   76 (257)
T ss_pred             EEEEEECCCc-cccCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCC-c-------
Confidence            8889999997 699999999        9999999999999999999999999999999999875320000 0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  .      +..              .....+..++..+..+|||+||+|+|+|
T Consensus        77 ----------------------------~------~~~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~a  108 (257)
T PRK06495         77 ----------------------------G------DLR--------------AHNRRTRECFHAIRECAKPVIAAVNGPA  108 (257)
T ss_pred             ----------------------------h------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                        0      000              1111223456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|+.  ++.+.+++++|..++++++++|+.++++||+++||++++++. +++
T Consensus       109 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~--~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~  185 (257)
T PRK06495        109 LGAGLGLVASCDIIVASENAVFGLPEIDVGLA--GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPP-EEL  185 (257)
T ss_pred             ehhHHHHHHhCCEEEecCCCEeeChhhccCcc--ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCH-HHH
Confidence            99999999999999999999999999999997  344678999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      .+.+.++++++++.||.+++.+|+.++.....+++++
T Consensus       186 ~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~  222 (257)
T PRK06495        186 MPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDG  222 (257)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999998777666654

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.2e-40  Score=283.77  Aligned_cols=209  Identities=26%  Similarity=0.367  Sum_probs=185.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++....   .       
T Consensus        15 v~~i~lnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~---~-------   76 (259)
T PRK06688         15 VLTITINRPDKKNALTAAMY--------QALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAP---P-------   76 (259)
T ss_pred             EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccC---c-------
Confidence            78889999999999999998        99999999999999999999999999999999998764200   0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  .      + .              .+...+..++..+.++|||+||+|+|+|
T Consensus        77 ----------------------------~------~-~--------------~~~~~~~~~~~~l~~~~kp~Iaav~G~a  107 (259)
T PRK06688         77 ----------------------------K------P-P--------------DELAPVNRFLRAIAALPKPVVAAVNGPA  107 (259)
T ss_pred             ----------------------------c------h-H--------------HHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence                                        0      0 0              0111233466678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.++ .+++++++|...+++++++|+.++++||+++|+|+++++. ++
T Consensus       108 ~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~  186 (259)
T PRK06688        108 VGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AE  186 (259)
T ss_pred             ecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCH-HH
Confidence            999999999999999999999999999999999875 4789999999999999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.+|.+++.+|+.+++....+++++
T Consensus       187 l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~  224 (259)
T PRK06688        187 LDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEA  224 (259)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHH
Confidence            99999999999999999999999999998877776654

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.6e-40  Score=283.59  Aligned_cols=209  Identities=19%  Similarity=0.245  Sum_probs=182.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.++++++ .|+++++|||+|.|+.||+|.|++++....  ..       
T Consensus        16 v~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~--~~-------   77 (260)
T PRK07659         16 VATIMLNRPEALNALDEPML--------KELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSN--DE-------   77 (260)
T ss_pred             EEEEEeCCcccccCCCHHHH--------HHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhcc--Cc-------
Confidence            78899999999999999998        9999999999 588999999999999999999998763200  00       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  .      +.              ..+...+..++..+..+|||+||+|+|+|
T Consensus        78 ----------------------------~------~~--------------~~~~~~~~~~~~~l~~~~~pvIaav~G~a  109 (260)
T PRK07659         78 ----------------------------S------KF--------------DGVMNTISEIVVTLYTMPKLTISAIHGPA  109 (260)
T ss_pred             ----------------------------h------hH--------------HHHHHHHHHHHHHHHhCCCCEEEEecCce
Confidence                                        0      00              01122234566778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|.++ .+++++++|..++++++++|+.++++||+++|++++++ . ++
T Consensus       110 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~  187 (260)
T PRK07659        110 AGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-G-GD  187 (260)
T ss_pred             ecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-h-hH
Confidence            999999999999999999999999999999999874 57899999999999999999999999999999999999 7 89


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.||.+++.+|+.++.....+++++
T Consensus       188 ~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~  225 (260)
T PRK07659        188 FQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQV  225 (260)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            99999999999999999999999999998776666543

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=5.5e-40  Score=305.26  Aligned_cols=268  Identities=16%  Similarity=0.158  Sum_probs=219.9

Q ss_pred             hhhhhhccCC----------CcccccCCCCccccchHHHHHHHHHHhhh-cCCCCeEEEEEcC-CCccccchhhhHHhhh
Q psy12573         38 IGRSLLLNNL----------PRHRLDAGTFGTMGVGLGFALAAALYCNH-YAPGKRVVCVQGD-SAFGFSGMELETLAVD  105 (315)
Q Consensus        38 ~~~~~l~~~~----------~~n~~~~~~~~~mg~~~~~~l~~~l~~~~-~d~~~~vvvl~g~-g~~~~aG~Dl~~~~~~  105 (315)
                      ++++|||+|+          ++|+++..++        .+|.+++++++ .|+++|+|||||. |++||+|+|++++...
T Consensus        21 Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l--------~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~   92 (546)
T TIGR03222        21 VATLTMDVDEDGGLRPGYKLKLNSYDLGVD--------IELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLS   92 (546)
T ss_pred             EEEEEEecccccccCccccccCCCCCHHHH--------HHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhcc
Confidence            8889999986          7899999988        99999999999 7899999999987 5789999999987431


Q ss_pred             ccC-chhHHHHHH-HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh--hHHHHH----
Q psy12573        106 KEG-RPKLDEIFS-TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN--ILVSTC----  175 (315)
Q Consensus       106 ~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~--~~~~~~----  175 (315)
                      ... ......... ..+.+...+..+++|+|++|||.++|+|..+++.||++++++.  ++|+.|+.+  ++.+.+    
T Consensus        93 ~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~  172 (546)
T TIGR03222        93 THAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLT  172 (546)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhh
Confidence            110 001111111 1223444567899999999999999999999999999988764  455444420  111110    


Q ss_pred             --------------------------------------------------------------------------------
Q psy12573        176 --------------------------------------------------------------------------------  175 (315)
Q Consensus       176 --------------------------------------------------------------------------------  175 (315)
                                                                                                      
T Consensus       173 ~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~~~~~~  252 (546)
T TIGR03222       173 RVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDRPADAKGVQLTPLERTIDEDG  252 (546)
T ss_pred             hccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhhcccCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy12573        176 --------------------------------------------------------------------------------  175 (315)
Q Consensus       176 --------------------------------------------------------------------------------  175 (315)
                                                                                                      
T Consensus       253 ~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~a  332 (546)
T TIGR03222       253 VRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVL  332 (546)
T ss_pred             cceeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceec
Confidence                                                                                            


Q ss_pred             ----------------------HHHHHHHhcCCCcEEEEE-ccccchhh-hHHHhhcCeeee-------eCCceeeCCCc
Q psy12573        176 ----------------------SDLMLSILRHPVPILAII-SGVAAAAG-CQLVATCDLAIA-------TTASKFSTPGA  224 (315)
Q Consensus       176 ----------------------~~~~~~l~~~~kpvIa~v-~G~~~g~G-~~l~l~~d~~~a-------~~~a~~~~pe~  224 (315)
                                            ..++..+..+|||+||+| +|+|+||| ++|+++||++++       +++++|++||.
T Consensus       333 G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~  412 (546)
T TIGR03222       333 AADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL  412 (546)
T ss_pred             CcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence                                  112334567899999999 89999999 999999999999       89999999999


Q ss_pred             cCCCCCCch-HHHHhhhc-CHHHH--HHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy12573        225 RHGIFCSTP-AVALTRKV-PLGVV--RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGK  300 (315)
Q Consensus       225 ~~Gl~~~~~-~~~l~~~~-g~~~a--~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k  300 (315)
                      ++|++|+++ .++|++++ |..++  ++++++|+.++++||+++||++++++. +++.+.+.+++++|+..||.+++.+|
T Consensus       413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K  491 (546)
T TIGR03222       413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFSPDALTGLE  491 (546)
T ss_pred             ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999875 47899998 99888  569999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHhhCCChhhh
Q psy12573        301 QFLYQQMSLNIEEA  314 (315)
Q Consensus       301 ~~l~~~~~~~l~~~  314 (315)
                      +.++.....+++++
T Consensus       492 ~~l~~~~~~~~~~~  505 (546)
T TIGR03222       492 ANLRFAGPETMETR  505 (546)
T ss_pred             HHHhhcCCcChhhh
Confidence            99999888887765

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.5e-40  Score=285.80  Aligned_cols=220  Identities=20%  Similarity=0.213  Sum_probs=184.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++....  ..+.     
T Consensus        16 v~~itlnrp~~~Nal~~~~~--------~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~--~~~~-----   80 (272)
T PRK06210         16 VAVITLNRPDRLNAWTPVME--------AEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTID--PSDG-----   80 (272)
T ss_pred             EEEEEeCCcccccCCCHHHH--------HHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccC--cccc-----
Confidence            78899999999999999998        99999999999999999999999999999999998764210  0000     


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  .   ...+...+.          ......+...+..+.++||||||+|+|+|
T Consensus        81 ----------------------------~---~~~~~~~~~----------~~~~~~~~~~~~~l~~~~kPvIaav~G~a  119 (272)
T PRK06210         81 ----------------------------R---RDTDVRPFV----------GNRRPDYQTRYHFLTALRKPVIAAINGAC  119 (272)
T ss_pred             ----------------------------c---ccccchhhh----------hhhhhhHHHHHHHHHhCCCCEEEEECCee
Confidence                                        0   000000000          00011123455678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|++++ +.+++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       120 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~  198 (272)
T PRK06210        120 AGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPP-DE  198 (272)
T ss_pred             ehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCH-HH
Confidence            9999999999999999999999999999999998854 679999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILEN-SRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~-~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++. +|.++..+|+.+++....+++++
T Consensus       199 l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~  237 (272)
T PRK06210        199 LMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEA  237 (272)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHH
Confidence            999999999999985 99999999999998776666554

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=7.6e-40  Score=282.43  Aligned_cols=205  Identities=24%  Similarity=0.257  Sum_probs=178.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.++++.++.|+++|+|||||.| +.||+|+|++++.....  .      
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~--~------   76 (259)
T TIGR01929        13 IAKITINRPQVRNAFRPLTV--------KEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY--I------   76 (259)
T ss_pred             EEEEEecCCccccCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc--c------
Confidence            78899999999999999998        9999999999999999999999999 68999999976521000  0      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                 ..       +.     .        ...  ....++..+..+|||+||+|+|+
T Consensus        77 ---------------------------~~-------~~-----~--------~~~--~~~~~~~~l~~~~kPvIAav~G~  107 (259)
T TIGR01929        77 ---------------------------DD-------SG-----V--------HRL--NVLDVQRQIRTCPKPVIAMVNGY  107 (259)
T ss_pred             ---------------------------ch-------hh-----H--------HHH--HHHHHHHHHHhCCCCEEEEEcCE
Confidence                                       00       00     0        000  11235567789999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.+ +++++++++|..++++++++|++++++||+++|+++++++. +
T Consensus       108 a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  186 (259)
T TIGR01929       108 AIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPL-A  186 (259)
T ss_pred             EehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCH-H
Confidence            999999999999999999999999999999999876 55789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      ++.+.+.+++++|++.||.+++.+|++++....
T Consensus       187 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~  219 (259)
T TIGR01929       187 DLEKETVRWCREILQKSPMAIRMLKAALNADCD  219 (259)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999987643

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-39  Score=283.10  Aligned_cols=215  Identities=20%  Similarity=0.225  Sum_probs=183.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCC-CeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPG-KRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~-~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.++++.++.|++ +++|||+|.|++||+|.|++++.....  .      
T Consensus        14 i~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~--~------   77 (266)
T PRK05981         14 VAILTLDHPEVMNAVSIDML--------GGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGR--E------   77 (266)
T ss_pred             EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccc--c------
Confidence            88899999999999999998        999999999998764 999999999999999999987632000  0      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                   ...  +.+..             ..+...+..++..+..+|||||++|+|+
T Consensus        78 -----------------------------~~~--~~~~~-------------~~~~~~~~~~~~~l~~~~kpvIaav~G~  113 (266)
T PRK05981         78 -----------------------------SDS--GGDAG-------------AALETAYHPFLRRLRNLPCPIVTAVNGP  113 (266)
T ss_pred             -----------------------------ccc--cchhH-------------HHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence                                         000  00000             0111223456678889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|++++ +.+++++|...+++++++|+.++++||+++|+|+++++. +
T Consensus       114 a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  192 (266)
T PRK05981        114 AAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDD-A  192 (266)
T ss_pred             eehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-h
Confidence            99999999999999999999999999999999998854 789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      ++.+.+.+++++++..||.+++.+|++++.....++++
T Consensus       193 ~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~  230 (266)
T PRK05981        193 ELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEE  230 (266)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHH
Confidence            99999999999999999999999999998876666554

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.4e-40  Score=280.73  Aligned_cols=208  Identities=22%  Similarity=0.336  Sum_probs=179.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+ .|+++..++        .+|.+++.+++.|+++|+|||+|.|+.||+|.|++++...    .       
T Consensus        12 v~~itlnrp~-~Nal~~~~~--------~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~----~-------   71 (249)
T PRK07938         12 IAEVTVDYPP-VNALPSAGW--------FALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT----P-------   71 (249)
T ss_pred             EEEEEECCCC-cccCCHHHH--------HHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc----c-------
Confidence            7788999997 599999998        9999999999999999999999999999999999865320    0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +....           ......+...+..+.++|||+||+|+|+|
T Consensus        72 -----------------------------------~~~~~-----------~~~~~~~~~~~~~i~~~~kPvIAav~G~a  105 (249)
T PRK07938         72 -----------------------------------GFTAL-----------IDANRGCFAAFRAVYECAVPVIAAVHGFC  105 (249)
T ss_pred             -----------------------------------chhHH-----------HHHHHHHHHHHHHHHhCCCCEEEEEcCEE
Confidence                                               00000           00011123456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|++  .+...+++++|...+++++++|+.++++||+++|+++++++. +++
T Consensus       106 ~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~--g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l  182 (249)
T PRK07938        106 LGGGIGLVGNADVIVASDDATFGLPEVDRGAL--GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPR-DQL  182 (249)
T ss_pred             eehHHHHHHhCCEEEEeCCCEeeCccceecCc--hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCH-HHH
Confidence            99999999999999999999999999999997  344679999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      .+.+.+++++|+..+|.+++.+|+.++.....++++.
T Consensus       183 ~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  219 (249)
T PRK07938        183 DEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERS  219 (249)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHH
Confidence            9999999999999999999999999998766666543

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.8e-40  Score=285.20  Aligned_cols=240  Identities=23%  Similarity=0.278  Sum_probs=187.3

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++.+++.|+++++|||+|.|+.||+|+|++++.
T Consensus         4 ~~v~~~~~~~----Va~ItlnrP~~~Nal~~~~~--------~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~   71 (288)
T PRK08290          4 EYVRYEVAGR----IARITLNRPEARNAQNRQML--------YELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGT   71 (288)
T ss_pred             ceEEEEeeCC----EEEEEecCccccCCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccc
Confidence            3444443 54    78899999999999999998        99999999999999999999999999999999998753


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ......+.                ..+.|.... .+        +.. .+.    ..      ........+..++..+.
T Consensus        72 ~~~~~~~~----------------~~~~~~~~~-~~--------~~~-~~~----~~------~~~~~~~~~~~~~~~l~  115 (288)
T PRK08290         72 PGRDRDPG----------------PDQHPTLWW-DG--------ATK-PGV----EQ------RYAREWEVYLGMCRRWR  115 (288)
T ss_pred             cccccccc----------------ccccccccc-cc--------ccc-cch----hh------HHHHHHHHHHHHHHHHH
Confidence            10000000                000011000 00        000 000    00      00011122334566788


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYN  263 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~  263 (315)
                      ++|||+||+|+|+|+|+|++|+++||+++++++++|++||.++|+. ..+.+.+++++|..++++++++|+.++++||++
T Consensus       116 ~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~  194 (288)
T PRK08290        116 DLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-GVEYFAHPWELGPRKAKELLFTGDRLTADEAHR  194 (288)
T ss_pred             hCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-cchHHHHHHHhhHHHHHHHHHcCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999994 444566888999999999999999999999999


Q ss_pred             cCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCC-Chhhh
Q psy12573        264 AGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSL-NIEEA  314 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~-~l~~~  314 (315)
                      +|+|+++++. +++.+.+.+++++|++.|+.+++.+|+.+++..+. +++++
T Consensus       195 ~GLV~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~  245 (288)
T PRK08290        195 LGMVNRVVPR-DELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAA  245 (288)
T ss_pred             CCCccEeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHH
Confidence            9999999999 99999999999999999999999999999987664 46554

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=2.6e-39  Score=281.06  Aligned_cols=204  Identities=25%  Similarity=0.263  Sum_probs=177.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.++++.++.|+++|+|||+|.| +.||+|.|++++...  ...      
T Consensus        23 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~--~~~------   86 (273)
T PRK07396         23 IAKITINRPEVRNAFRPKTV--------KEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYG--GYV------   86 (273)
T ss_pred             EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcc--ccc------
Confidence            78899999999999999998        9999999999999999999999999 589999999865210  000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                  ..      +.  . .          .+  ....++..+.++|||+||+|+|+
T Consensus        87 ----------------------------~~------~~--~-~----------~~--~~~~~~~~l~~~~kPvIAav~G~  117 (273)
T PRK07396         87 ----------------------------DD------DG--V-P----------RL--NVLDLQRLIRTCPKPVIAMVAGY  117 (273)
T ss_pred             ----------------------------ch------hh--h-h----------hh--HHHHHHHHHHhCCCCEEEEECCE
Confidence                                        00      00  0 0          00  01234556789999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.+ +..++++++|..++++++++|+.++++||+++|||+++++. +
T Consensus       118 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~  196 (273)
T PRK07396        118 AIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPL-A  196 (273)
T ss_pred             EehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-H
Confidence            999999999999999999999999999999999887 45789999999999999999999999999999999999998 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQM  307 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~  307 (315)
                      ++.+.+.+++++|+..+|.+++.+|+.++...
T Consensus       197 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~  228 (273)
T PRK07396        197 DLEKETVRWCREMLQNSPMALRCLKAALNADC  228 (273)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999998754

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=3e-39  Score=277.13  Aligned_cols=203  Identities=19%  Similarity=0.244  Sum_probs=174.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+ .|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|+.++..     ..      
T Consensus        11 v~~itlnrp~-~Nal~~~~~--------~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-----~~------   70 (251)
T TIGR03189        11 LLRLRLARPK-ANIVDAAMI--------AALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-----DQ------   70 (251)
T ss_pred             EEEEEeCCCC-cCCCCHHHH--------HHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-----hh------
Confidence            7889999996 699999998        999999999999999999999999999999999875310     00      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 ..                       ........++..+..+|||+||+|+|+|
T Consensus        71 ---------------------------~~-----------------------~~~~~~~~~~~~l~~~~kPvIaav~G~a  100 (251)
T TIGR03189        71 ---------------------------CA-----------------------AMLASLHKLVIAMLDSPVPILVAVRGQC  100 (251)
T ss_pred             ---------------------------HH-----------------------HHHHHHHHHHHHHHhCCCCEEEEecCee
Confidence                                       00                       0011123456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||+++|++|.++++++++++|...+++++++|+.++++||+++|++++++++ ++ 
T Consensus       101 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~-  178 (251)
T TIGR03189       101 LGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAED-PE-  178 (251)
T ss_pred             eeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCc-HH-
Confidence            9999999999999999999999999999999987667889999999999999999999999999999999999986 44 


Q ss_pred             HHHHHHH-HHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        278 ESETKVL-TSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       278 ~~~~~~~-~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                       +.+.++ ++++++.||.+++.+|+.++.....++++
T Consensus       179 -~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~  214 (251)
T TIGR03189       179 -NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKA  214 (251)
T ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHH
Confidence             455555 68999999999999999999876665543

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=3.3e-39  Score=278.63  Aligned_cols=201  Identities=25%  Similarity=0.303  Sum_probs=176.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC--CccccchhhhHHhhhccCchhHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS--AFGFSGMELETLAVDKEGRPKLDEI  115 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g--~~~~aG~Dl~~~~~~~~~~~~~~~~  115 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+ +++|||+|.|  ++||+|.|++++....         
T Consensus        14 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~---------   75 (261)
T PRK11423         14 IATITFNNPAKRNALSKVLI--------DDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG---------   75 (261)
T ss_pred             EEEEEEcCccccCCCCHHHH--------HHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc---------
Confidence            78899999999999999998        99999999999887 9999999863  7899999998753100         


Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                                                    .      +..              .+...+..++..+..+|||+||+|+|
T Consensus        76 ------------------------------~------~~~--------------~~~~~~~~l~~~i~~~~kPvIaav~G  105 (261)
T PRK11423         76 ------------------------------R------DPL--------------SYDDPLRQILRMIQKFPKPVIAMVEG  105 (261)
T ss_pred             ------------------------------c------cHH--------------HHHHHHHHHHHHHHhCCCCEEEEEec
Confidence                                          0      000              00111234566788999999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN  274 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~  274 (315)
                      +|+|||++|+++||+++++++++|++||.++|++|.++ ..++++++|..++++++++|++++++||+++|+|+++++. 
T Consensus       106 ~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-  184 (261)
T PRK11423        106 SVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEV-  184 (261)
T ss_pred             EEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-
Confidence            99999999999999999999999999999999998874 5789999999999999999999999999999999999998 


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q psy12573        275 EELESETKVLTSAILENSRSVLTLGKQFLYQQM  307 (315)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~  307 (315)
                      +++.+.+.++++++++.+|.+++.+|+.++...
T Consensus       185 ~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~  217 (261)
T PRK11423        185 EELEDFTLQMAHHISEKAPLAIAVIKEQLRVLG  217 (261)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998653

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-39  Score=283.48  Aligned_cols=219  Identities=21%  Similarity=0.240  Sum_probs=180.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.++|++++.|+++++|||+|.|++||+|.|++++.......+.      
T Consensus        14 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~------   79 (296)
T PRK08260         14 IATITLNRPDKLNAFTVTMA--------RELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP------   79 (296)
T ss_pred             EEEEEeCCCcccCCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc------
Confidence            78899999999999999998        9999999999999999999999999999999999876310000000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                  ..+.              . ...+.         ...... .+......++..+..+|||+||+|+|+
T Consensus        80 ------------~~~~--------------~-~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~  123 (296)
T PRK08260         80 ------------RTPV--------------E-ADEED---------RADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGP  123 (296)
T ss_pred             ------------cccc--------------c-ccccc---------ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence                        0000              0 00000         000000 122223456677889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|++++++||+++|+|+++++. +
T Consensus       124 a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~  202 (296)
T PRK08260        124 AVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPP-D  202 (296)
T ss_pred             eehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCH-H
Confidence            99999999999999999999999999999999998854 689999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhh
Q psy12573        276 ELESETKVLTSAILEN-SRSVLTLGKQFLYQQM  307 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~-~~~a~~~~k~~l~~~~  307 (315)
                      ++.+.+.+++++|+.. +|.+++.+|+++++..
T Consensus       203 ~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~  235 (296)
T PRK08260        203 ELLPAARALAREIADNTSPVSVALTRQMMWRMA  235 (296)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence            9999999999999985 9999999999998764

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.9e-39  Score=284.56  Aligned_cols=222  Identities=18%  Similarity=0.206  Sum_probs=175.6

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|+||+......   ...     
T Consensus        15 Va~ItLnrP~~~NAl~~~~~--------~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~---~~~-----   78 (298)
T PRK12478         15 VATITLNRPEQLNTIVPPMP--------DEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHW---GEA-----   78 (298)
T ss_pred             EEEEEecCCcccCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCcccCcCcccccccc---chh-----
Confidence            88899999999999999999        99999999999999999999999999999999997521100   000     


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                  ..+           .+. .....++..+...           .......+..+.++|||+||+|+|+|
T Consensus        79 ------------~~~-----------~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~kPvIAaV~G~a  123 (298)
T PRK12478         79 ------------MMT-----------DGR-WDPGKDFAMVTAR-----------ETGPTQKFMAIWRASKPVIAQVHGWC  123 (298)
T ss_pred             ------------ccc-----------ccc-cCchhhhhhhhhh-----------hcchHHHHHHHHhCCCCEEEEEccEE
Confidence                        000           000 0000000000000           00011234467889999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccC-CCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARH-GIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~-Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++ |+++.. .  +.+++|..++++++++|++++++||+++|||+++++. ++
T Consensus       124 ~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~~-~--~~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~  199 (298)
T PRK12478        124 VGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTG-M--WLYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ER  199 (298)
T ss_pred             ehhHHHHHHHCCEEEEcCCcEEeccccccccCCchh-H--HHHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCH-HH
Confidence            99999999999999999999999999997 887522 2  2356999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC-CChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMS-LNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~-~~l~~~  314 (315)
                      +.+.+.+++++|+..||.+++.+|++++.... .+++++
T Consensus       200 l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~  238 (298)
T PRK12478        200 LEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLAST  238 (298)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHH
Confidence            99999999999999999999999999998765 345544

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=3.3e-39  Score=278.68  Aligned_cols=210  Identities=27%  Similarity=0.378  Sum_probs=184.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||+|+++|+++..++        .+|.+++.+++.|+++|+|||+|.|+.||+|+||+.+..     +.      
T Consensus        15 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-----~~------   75 (257)
T COG1024          15 IAVITLNRPEKLNALNLEML--------DELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-----PE------   75 (257)
T ss_pred             EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-----cc------
Confidence            78899999999999999999        999999999999999999999999999999999998752     00      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                .....      .              .+......++..+.++||||||+|+|+|
T Consensus        76 --------------------------~~~~~------~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~a  109 (257)
T COG1024          76 --------------------------DGNAA------E--------------NLMQPGQDLLRALADLPKPVIAAVNGYA  109 (257)
T ss_pred             --------------------------chhHH------H--------------HHHhHHHHHHHHHHhCCCCEEEEEcceE
Confidence                                      00000      0              1222334577889999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++|+++++|++||+++|++|+. +++++++++|...+++++++|+.++++||+++|+|+++++..++
T Consensus       110 ~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~  189 (257)
T COG1024         110 LGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEE  189 (257)
T ss_pred             eechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHH
Confidence            99999999999999999999999999999999964 56889999999999999999999999999999999999985369


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +.+.+.+++++++. +|.++..+|+.++......+++
T Consensus       190 l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~  225 (257)
T COG1024         190 LLERALELARRLAA-PPLALAATKRLVRAALEADLAE  225 (257)
T ss_pred             HHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHH
Confidence            99999999999988 9999999999999886655554

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-39  Score=279.51  Aligned_cols=215  Identities=23%  Similarity=0.274  Sum_probs=181.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++.....  ...     
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~--~~~-----   77 (262)
T PRK07509         13 IADVRLNRPDKMNALDFAMF--------EELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPG--NAV-----   77 (262)
T ss_pred             EEEEEecCcccccCCCHHHH--------HHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccc--hhh-----
Confidence            78899999999999999998        999999999999999999999999999999999987642100  000     


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  .      ++...          .......+..++..+.++|||+||+|+|+|
T Consensus        78 ----------------------------~------~~~~~----------~~~~~~~~~~~~~~~~~~~kpvIaav~G~a  113 (262)
T PRK07509         78 ----------------------------K------LLFKR----------LPGNANLAQRVSLGWRRLPVPVIAALEGVC  113 (262)
T ss_pred             ----------------------------h------hHhhh----------hHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                        0      00000          001111223455677899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ ++++++++|...+++++++|+.++++||+++|+|+++++.   
T Consensus       114 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---  190 (262)
T PRK07509        114 FGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSDD---  190 (262)
T ss_pred             ecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhch---
Confidence            999999999999999999999999999999999875 4789999999999999999999999999999999999854   


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.++++++++.||.++..+|+.+++....+++++
T Consensus       191 ~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~  228 (262)
T PRK07509        191 PLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRAL  228 (262)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            67899999999999999999999999998877666543

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=3.8e-39  Score=280.13  Aligned_cols=211  Identities=20%  Similarity=0.259  Sum_probs=180.6

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC--CccccchhhhHHhhhccCchhHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS--AFGFSGMELETLAVDKEGRPKLDEI  115 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g--~~~~aG~Dl~~~~~~~~~~~~~~~~  115 (315)
                      ++++|||+| +.|+++..++        .+|.+++++++.|+++|+|||+|.|  ++||+|.|++++.....        
T Consensus        22 Va~itlnr~-~~Nal~~~~~--------~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~--------   84 (278)
T PLN03214         22 IAVVWLAKE-PVNSMTLAMW--------RSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT--------   84 (278)
T ss_pred             EEEEEECCC-CCCCCCHHHH--------HHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcccc--------
Confidence            888999997 5799999998        9999999999999999999999998  68999999987531000        


Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                                                  ....      ..              .+......++..+.++||||||+|+|
T Consensus        85 ----------------------------~~~~------~~--------------~~~~~~~~~~~~l~~~~kPvIAaV~G  116 (278)
T PLN03214         85 ----------------------------SAAR------YA--------------EFWLTQTTFLVRLLRSRLATVCAIRG  116 (278)
T ss_pred             ----------------------------chHH------HH--------------HHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence                                        0000      00              01111223556788999999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCC-CCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGI-FCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl-~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +|+|||++|+++||+++++++++|++||+++|+ +|..+ .+++++++|..++++++++|+.++++||+++|+|+++++.
T Consensus       117 ~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~  196 (278)
T PLN03214        117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPA  196 (278)
T ss_pred             cccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecCh
Confidence            999999999999999999999999999999999 48765 4789999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        274 NEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       274 ~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                       +++.+.+.+++++|+..+|.+++.+|+.+++....+++++
T Consensus       197 -~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~  236 (278)
T PLN03214        197 -AALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAY  236 (278)
T ss_pred             -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHH
Confidence             9999999999999999999999999999998766665543

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=6.7e-39  Score=299.10  Aligned_cols=278  Identities=17%  Similarity=0.151  Sum_probs=221.5

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCC----------CcccccCCCCccccchHHHHHHHHHHhhh-cCCCCeEEEEEcCC-
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNL----------PRHRLDAGTFGTMGVGLGFALAAALYCNH-YAPGKRVVCVQGDS-   90 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~----------~~n~~~~~~~~~mg~~~~~~l~~~l~~~~-~d~~~~vvvl~g~g-   90 (315)
                      .+.+.+.. ++    ++++|||+|+          ++|+++..++        .+|.+++++++ +|+++++|||+|.+ 
T Consensus        14 ~~~~~~e~~~~----Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~--------~eL~~al~~~~~~d~~vrvVVLtg~gg   81 (550)
T PRK08184         14 YRHWKLSFDGP----VATLTMDVDEDGGLRPGYKLKLNSYDLGVD--------IELHDALQRIRFEHPEVRTVVVTSAKD   81 (550)
T ss_pred             CceEEEEeeCC----EEEEEEcCccccccCcccccCCCCCCHHHH--------HHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence            34444443 54    8889999653          7899998888        99999999998 78999999999985 


Q ss_pred             CccccchhhhHHhhhccC-chhHHHHHHH-HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCc
Q psy12573         91 AFGFSGMELETLAVDKEG-RPKLDEIFST-CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTP  166 (315)
Q Consensus        91 ~~~~aG~Dl~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~  166 (315)
                      +.||+|.|++.+...... ........+. ...+...+..+++|+|++|||.+.|+|..++..||++++++.  ++|+.|
T Consensus        82 k~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~p  161 (550)
T PRK08184         82 RVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLP  161 (550)
T ss_pred             CCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEcc
Confidence            789999999987431110 0001111111 122334567899999999999999999999999999887654  334333


Q ss_pred             chh--hHHHH----------------------------------------------------------------------
Q psy12573        167 GYN--ILVST----------------------------------------------------------------------  174 (315)
Q Consensus       167 ~~~--~~~~~----------------------------------------------------------------------  174 (315)
                      +.+  ++.+.                                                                      
T Consensus       162 Ev~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~~~~~~  241 (550)
T PRK08184        162 EVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDRPADAK  241 (550)
T ss_pred             chhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            210  00000                                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy12573        175 --------------------------------------------------------------------------------  174 (315)
Q Consensus       175 --------------------------------------------------------------------------------  174 (315)
                                                                                                      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~v  321 (550)
T PRK08184        242 GVALTPLERTIDADGLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDI  321 (550)
T ss_pred             ccccccccccccCCceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCe
Confidence                                                                                            


Q ss_pred             ------------------------------------HHHHHHHHhcCCCcEEEEEc-cccchhh-hHHHhhcCeeeee--
Q psy12573        175 ------------------------------------CSDLMLSILRHPVPILAIIS-GVAAAAG-CQLVATCDLAIAT--  214 (315)
Q Consensus       175 ------------------------------------~~~~~~~l~~~~kpvIa~v~-G~~~g~G-~~l~l~~d~~~a~--  214 (315)
                                                          ...++..+.++|||+||+|+ |+|+||| ++|+++||+++++  
T Consensus       322 r~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~  401 (550)
T PRK08184        322 GTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLAL  401 (550)
T ss_pred             EEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCC
Confidence                                                00123345678999999997 9999999 9999999999999  


Q ss_pred             -----CCceeeCCCccCCCCCCc-hHHHHhhh-cCHHHHHHH--HhcCCCCCHHHHHHcCccccccCCchHHHHHHHHHH
Q psy12573        215 -----TASKFSTPGARHGIFCST-PAVALTRK-VPLGVVRSM--TITGIPISAQDAYNAGLITRVVSSNEELESETKVLT  285 (315)
Q Consensus       215 -----~~a~~~~pe~~~Gl~~~~-~~~~l~~~-~g~~~a~~~--~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~  285 (315)
                           ++++|++||.++|++|++ +.++|+++ +|..+++++  +++|+.++++||+++|||+++++. +++.+.+.+++
T Consensus       402 ~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a  480 (550)
T PRK08184        402 PDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIAL  480 (550)
T ss_pred             CCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHH
Confidence                 999999999999999987 45789988 699999997  589999999999999999999999 99999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        286 SAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       286 ~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++++..||.+++.+|++++.....+++++
T Consensus       481 ~~ia~~~p~a~~~~K~~l~~~~~~~~~~~  509 (550)
T PRK08184        481 EERASLSPDALTGMEANLRFAGPETMETR  509 (550)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999988888775

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.6e-38  Score=280.57  Aligned_cols=205  Identities=27%  Similarity=0.320  Sum_probs=178.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++..++.|+++++|||+|.| +.||+|+|++.+...  ...      
T Consensus        77 Va~ItLnrP~~~Nal~~~~~--------~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~--~~~------  140 (327)
T PLN02921         77 IAKITINRPERRNAFRPRTV--------KELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKD--GYV------  140 (327)
T ss_pred             EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcc--ccc------
Confidence            88999999999999999999        9999999999999999999999999 689999999765310  000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                  +      .+  ..           ..+  ....++..+.++||||||+|+|+
T Consensus       141 ----------------------------~------~~--~~-----------~~~--~~~~l~~~l~~~~kPvIAaVnG~  171 (327)
T PLN02921        141 ----------------------------G------PD--DA-----------GRL--NVLDLQIQIRRLPKPVIAMVAGY  171 (327)
T ss_pred             ----------------------------c------hh--HH-----------HHH--HHHHHHHHHHhCCCCEEEEECCE
Confidence                                        0      00  00           000  01234557789999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.+ +.+.+++++|..++++++++|+.++++||+++|||+++++. +
T Consensus       172 a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~  250 (327)
T PLN02921        172 AVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPL-D  250 (327)
T ss_pred             EecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-H
Confidence            999999999999999999999999999999999877 45789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      ++.+.+.+++++|++.+|.+++.+|++++...+
T Consensus       251 ~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~  283 (327)
T PLN02921        251 ELEGETVKWCREILRNSPTAIRVLKSALNAADD  283 (327)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999987643

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.7e-39  Score=281.38  Aligned_cols=226  Identities=22%  Similarity=0.200  Sum_probs=179.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||||+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++.........      
T Consensus        20 V~~Itlnrp~~~Nal~~~m~--------~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~------   85 (302)
T PRK08272         20 IARITLNRPEKGNAITADTP--------LELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGG------   85 (302)
T ss_pred             EEEEEecCccccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccc------
Confidence            88999999999999999998        9999999999999999999999999999999999887431100000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                ..+.+..  ..     ....   ..+..        ..+-.. .........+..+.++|||+||+|+|+
T Consensus        86 ----------~~~~~~~--~~-----~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~  137 (302)
T PRK08272         86 ----------GGAYPGK--RQ-----AVNH---LPDDP--------WDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGY  137 (302)
T ss_pred             ----------ccccccc--cc-----cccc---ccccc--------ccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence                      0000000  00     0000   00000        000000 122334456677889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      |+|||++|+++||+++++++++|++||.++|.+|.  ...+.+++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       138 a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~--~~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~  214 (302)
T PRK08272        138 CVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPA--TGMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EE  214 (302)
T ss_pred             eehhhHHHHHhCCEEEEeCCCEecCcchhcccCCh--HHHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCH-HH
Confidence            99999999999999999999999999999755553  2457788999999999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      +.+.+.+++++|++.||.+++.+|+.+++.++
T Consensus       215 l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~  246 (302)
T PRK08272        215 LDERTERLVERIAAVPVNQLAMVKLAVNSALL  246 (302)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998764

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-38  Score=272.61  Aligned_cols=202  Identities=20%  Similarity=0.167  Sum_probs=175.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++...     .      
T Consensus        10 v~~itlnrp~~~Nal~~~~~--------~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~-----~------   70 (248)
T PRK06072         10 YAIVTMSRPDKLNALNLEMR--------NEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD-----F------   70 (248)
T ss_pred             EEEEEECCcccccCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh-----h------
Confidence            78899999999999999998        9999999999999999999999999999999999865310     0      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 ..                       .+...+..++..+..+|||+||+|+|+|
T Consensus        71 ---------------------------~~-----------------------~~~~~~~~~~~~l~~~~kPvIaav~G~a  100 (248)
T PRK06072         71 ---------------------------AI-----------------------DLRETFYPIIREIRFSDKIYISAINGVT  100 (248)
T ss_pred             ---------------------------HH-----------------------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                       00                       0011123455677889999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|+|++|+++||+++++++++|++||.++|++|..+ .+.+++++|. ++++++++|+.++++||+++|+|+.+    ++
T Consensus       101 ~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~----~~  175 (248)
T PRK06072        101 AGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS----ED  175 (248)
T ss_pred             ehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc----ch
Confidence            999999999999999999999999999999998875 4689999996 89999999999999999999999953    34


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +.+.+.++++++++.||.+++.+|+.+++....++++
T Consensus       176 ~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~  212 (248)
T PRK06072        176 PLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEE  212 (248)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHH
Confidence            6788999999999999999999999999876666654

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=1.2e-38  Score=284.19  Aligned_cols=213  Identities=23%  Similarity=0.239  Sum_probs=181.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||||+++|+++..|+        .+|.+++.+++.|+++|+|||+|.| ++||+|+|++++......        
T Consensus        13 v~~itLnrP~~~Nal~~~m~--------~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~--------   76 (342)
T PRK05617         13 VGVITLNRPKALNALSLEMI--------RAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARA--------   76 (342)
T ss_pred             EEEEEECCCccccCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhcc--------
Confidence            78899999999999999998        9999999999999999999999999 899999999876420000        


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                 .+.      +..             ..+......++..+..+|||+||+|+|+
T Consensus        77 ---------------------------~~~------~~~-------------~~~~~~~~~~~~~i~~~~kPvIAaVnG~  110 (342)
T PRK05617         77 ---------------------------GDP------LAA-------------DRFFREEYRLNALIARYPKPYIALMDGI  110 (342)
T ss_pred             ---------------------------CCc------hhH-------------HHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence                                       000      000             0011112235567789999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|++++ ++++++.| ..+++++++|+.++++||+++|+|+++++. +
T Consensus       111 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~  188 (342)
T PRK05617        111 VMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPS-A  188 (342)
T ss_pred             EEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCH-H
Confidence            99999999999999999999999999999999998855 67888766 789999999999999999999999999998 8


Q ss_pred             HHHHH--------------------------------------------------------------HHHHHHHHHhCCH
Q psy12573        276 ELESE--------------------------------------------------------------TKVLTSAILENSR  293 (315)
Q Consensus       276 ~~~~~--------------------------------------------------------------~~~~~~~l~~~~~  293 (315)
                      ++.+.                                                              +.+++++|++.||
T Consensus       189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp  268 (342)
T PRK05617        189 DLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSP  268 (342)
T ss_pred             HHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCc
Confidence            88776                                                              8899999999999


Q ss_pred             HHHHHHHHHHHHhhCCChhhh
Q psy12573        294 SVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       294 ~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      .+++.+|+++++....+++++
T Consensus       269 ~a~~~~k~~l~~~~~~~l~~~  289 (342)
T PRK05617        269 TSLKVTLEQLRRARGLTLEEC  289 (342)
T ss_pred             HHHHHHHHHHHHhcCCCHHHH
Confidence            999999999998877777665

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=2.1e-39  Score=278.47  Aligned_cols=209  Identities=27%  Similarity=0.396  Sum_probs=186.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |++++||+|+++|++|..++        .+|.++|+.++.|+++++|+++|.|+.||+|.|++++...   ..       
T Consensus         8 v~~i~ln~p~~~N~l~~~~~--------~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~---~~-------   69 (245)
T PF00378_consen    8 VATITLNRPEKRNALNPEML--------DELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS---DE-------   69 (245)
T ss_dssp             EEEEEEECGGGTTEBSHHHH--------HHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH---HH-------
T ss_pred             EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc---cc-------
Confidence            78899999999999999998        9999999999999999999999999999999999887641   00       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                           .           ....+...+..++..+..+|||+||+|+|+|
T Consensus        70 -------------------------------------~-----------~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a  101 (245)
T PF00378_consen   70 -------------------------------------E-----------EAREFFRRFQELLSRLANFPKPTIAAVNGHA  101 (245)
T ss_dssp             -------------------------------------H-----------HHHHHHHHHHHHHHHHHHSSSEEEEEESSEE
T ss_pred             -------------------------------------c-----------cccccchhhccccccchhhhhheeecccccc
Confidence                                                 0           0002334456788889999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|+|++|+++||+++++++++|++||.++|++|+. +..++++++|...+++++++|+.++++||+++|++++++++ ++
T Consensus       102 ~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~  180 (245)
T PF00378_consen  102 VGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPD-EE  180 (245)
T ss_dssp             ETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESG-GG
T ss_pred             cccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCc-hh
Confidence            99999999999999999999999999999999977 45789999999999999999999999999999999999999 88


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +.+.+.+++++++..++.+++.+|+.+++.....+++
T Consensus       181 l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~  217 (245)
T PF00378_consen  181 LDEEALELAKRLAAKPPSALRATKKALNRALEQSLEE  217 (245)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999999999999976655544

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-38  Score=274.43  Aligned_cols=209  Identities=21%  Similarity=0.264  Sum_probs=177.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.++++.++.|+++++|||+|.|+.||+|.|++++.....+..       
T Consensus        16 v~~i~lnrp~~~Nal~~~~~--------~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-------   80 (260)
T PRK07827         16 VATLTLDSPHNRNALSARLV--------AQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPY-------   80 (260)
T ss_pred             EEEEEEcCccccCCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCch-------
Confidence            78899999999999999998        999999999999999999999999999999999987642000000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +.   .          ..+...+..+++.+..+|||+||+|+|+|
T Consensus        81 -----------------------------------~~---~----------~~~~~~~~~~~~~l~~~~kPvIaav~G~a  112 (260)
T PRK07827         81 -----------------------------------DA---A----------VARAREMTALLRAIVELPKPVIAAIDGHV  112 (260)
T ss_pred             -----------------------------------hH---H----------HHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence                                               00   0          01112234566778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|++++ ++++++ +...+++++++|+.++++||+++|+|++++   ++
T Consensus       113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~---~~  188 (260)
T PRK07827        113 RAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRL-SPRAAARYYLTGEKFGAAEAARIGLVTAAA---DD  188 (260)
T ss_pred             ecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhh-hHHHHHHHHHhCCccCHHHHHHcCCcccch---HH
Confidence            9999999999999999999999999999999998865 567765 567899999999999999999999999985   45


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +.+.+.++++++++.+|.++..+|+.+++....++++
T Consensus       189 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~  225 (260)
T PRK07827        189 VDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDR  225 (260)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHH
Confidence            8999999999999999999999999999887666554

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-38  Score=268.21  Aligned_cols=206  Identities=19%  Similarity=0.229  Sum_probs=177.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+| +.|++++.++        .+|.+++++++  +++++||++|.|+.||+|.|++++...    +.      
T Consensus        13 v~~itln~~-~~Nal~~~~~--------~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~----~~------   71 (229)
T PRK06213         13 VATITLDDG-KVNALSPAMI--------DALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG----AQ------   71 (229)
T ss_pred             EEEEEeCCC-CCCCCCHHHH--------HHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc----hH------
Confidence            788999997 6799999998        99999999887  557999999999999999999876320    00      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +.              ..+......++..+..+|||+||+|+|+|
T Consensus        72 -----------------------------------~~--------------~~~~~~~~~l~~~l~~~~kPvIAav~G~a  102 (229)
T PRK06213         72 -----------------------------------AA--------------IALLTAGSTLARRLLSHPKPVIVACTGHA  102 (229)
T ss_pred             -----------------------------------hH--------------HHHHHHHHHHHHHHHcCCCCEEEEEcCee
Confidence                                               00              01112233456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      +|+|++|+++||+++++++ ++|++||.++|++|.. +...+.+++|...+++++++|++++++||+++|+|+++++. +
T Consensus       103 ~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~  181 (229)
T PRK06213        103 IAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPP-E  181 (229)
T ss_pred             eHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccCh-H
Confidence            9999999999999999998 9999999999998655 45678889999999999999999999999999999999998 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.++++++++.+|.+++.+|+.++.....+++++
T Consensus       182 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  220 (229)
T PRK06213        182 QLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIRAA  220 (229)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998766665543

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=3.5e-38  Score=284.35  Aligned_cols=212  Identities=17%  Similarity=0.162  Sum_probs=179.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||||+++|+++..++        .+|.++++.++.|+++|+|||+|.|+.||+|+|++++......         
T Consensus        21 v~~ItLnrP~~~Nal~~~m~--------~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~---------   83 (379)
T PLN02874         21 VRVITLNRPRQLNVISLSVV--------SLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRES---------   83 (379)
T ss_pred             EEEEEECCCccccCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhccc---------
Confidence            78899999999999999998        9999999999999999999999999999999999876320000         


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 +.      ..              .........+...+.++|||+||+|+|+|
T Consensus        84 ---------------------------~~------~~--------------~~~~~~~~~l~~~i~~~~kPvIAaV~G~a  116 (379)
T PLN02874         84 ---------------------------DD------SC--------------LEVVYRMYWLCYHIHTYKKTQVALVHGLV  116 (379)
T ss_pred             ---------------------------ch------HH--------------HHHHHHHHHHHHHHHhCCCCEEEEecCeE
Confidence                                       00      00              00111122344567899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|++++ +++++++|. .+++++++|+++++++|+++||++++++. ++
T Consensus       117 ~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~  194 (379)
T PLN02874        117 MGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPS-EK  194 (379)
T ss_pred             EecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCH-HH
Confidence            9999999999999999999999999999999998754 678888775 89999999999999999999999999998 77


Q ss_pred             HHH---H----------------------------------------------------------------HHHHHHHHH
Q psy12573        277 LES---E----------------------------------------------------------------TKVLTSAIL  289 (315)
Q Consensus       277 ~~~---~----------------------------------------------------------------~~~~~~~l~  289 (315)
                      +.+   .                                                                +.+++++|+
T Consensus       195 l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~  274 (379)
T PLN02874        195 LPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLR  274 (379)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHH
Confidence            755   2                                                                347899999


Q ss_pred             hCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        290 ENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       290 ~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      +.+|.+++.+|+++++..+.+++++|
T Consensus       275 ~~sP~al~~tk~~~~~~~~~~l~~~l  300 (379)
T PLN02874        275 RSSPTGLKITLRSIREGRKQSLAECL  300 (379)
T ss_pred             hcChHHHHHHHHHHHHhccCCHHHHH
Confidence            99999999999999998887887654

>KOG1681|consensus

Probab=100.00  E-value=3.9e-40  Score=262.84  Aligned_cols=225  Identities=21%  Similarity=0.296  Sum_probs=196.3

Q ss_pred             HhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         37 DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        37 ~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++.++.||||.+.|+++..+|        .|+.++++.++.||++|+|||+|.|+.||+|.|+..+.......+      
T Consensus        31 ~V~hv~lnRPsk~Nal~~~~w--------~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~------   96 (292)
T KOG1681|consen   31 FVYHVQLNRPSKLNALNKVFW--------REFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQP------   96 (292)
T ss_pred             eEEEEEecCcchhhhhhHHHH--------HHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcccc------
Confidence            466778999999999999999        999999999999999999999999999999999765532110000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                       -+-|..--.       ...+.++..++..+..+.+||||||+++||+
T Consensus        97 ---------------------------------~~dd~aR~g-------~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~  136 (292)
T KOG1681|consen   97 ---------------------------------EGDDVARKG-------RSLRRIIKRYQDTFTAIERCPKPVIAAVHGA  136 (292)
T ss_pred             ---------------------------------ccchHhhhh-------HHHHHHHHHHHHHHHHHHhCChhHHHHHHhh
Confidence                                             011221100       1122566777889999999999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcC-HHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVP-LGVVRSMTITGIPISAQDAYNAGLITRVVSSN  274 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g-~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~  274 (315)
                      |+|+|+.|..+||+|++++++.|+..|+.+|+..+.++ .++++.+| ...++++.+|++.+++.||++.||++++++++
T Consensus       137 CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk  216 (292)
T KOG1681|consen  137 CIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDK  216 (292)
T ss_pred             hccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCH
Confidence            99999999999999999999999999999999999877 68999999 78999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        275 EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       275 ~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      +++.+.+..+++.|+.++|.+++.||..|+..++.+.+++|
T Consensus       217 ~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sL  257 (292)
T KOG1681|consen  217 EELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVEESL  257 (292)
T ss_pred             HHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhhhhH
Confidence            99999999999999999999999999999999999988865

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=5.4e-38  Score=276.03  Aligned_cols=215  Identities=24%  Similarity=0.223  Sum_probs=177.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-------CccccchhhhHHhhhccCch
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-------AFGFSGMELETLAVDKEGRP  110 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-------~~~~aG~Dl~~~~~~~~~~~  110 (315)
                      ++.+|||||+++|+++..++        .+|.+++++++.|+++++|||+|.|       +.||+|+|++.+....   .
T Consensus        35 va~itlnrP~~~Nal~~~~~--------~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~---~  103 (302)
T PRK08321         35 TVRIAFDRPEVRNAFRPHTV--------DELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDG---Y  103 (302)
T ss_pred             EEEEEeCCcccccCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccc---c
Confidence            78899999999999999998        9999999999999999999999998       4899999998652100   0


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEE
Q psy12573        111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPIL  190 (315)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI  190 (315)
                      ..                              ..+.. ....+..           .. .. .....+.+.+..+|||+|
T Consensus       104 ~~------------------------------~~~~~-~~~~~~~-----------~~-~~-~~~~~~~~~l~~~pkP~I  139 (302)
T PRK08321        104 QY------------------------------AEGDE-ADTVDPA-----------RA-GR-LHILEVQRLIRFMPKVVI  139 (302)
T ss_pred             cc------------------------------ccccc-ccchhhh-----------HH-HH-HHHHHHHHHHHcCCCCEE
Confidence            00                              00000 0000000           00 00 011234556788999999


Q ss_pred             EEEccccchhhhHHHhhcCeeeee-CCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy12573        191 AIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLIT  268 (315)
Q Consensus       191 a~v~G~~~g~G~~l~l~~d~~~a~-~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~  268 (315)
                      |+|+|+|+|||++|+++||+++++ ++++|++||.++|++|.+ +++++++++|..++++++++|+.++++||+++|+|+
T Consensus       140 AaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~  219 (302)
T PRK08321        140 AVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVN  219 (302)
T ss_pred             EEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCce
Confidence            999999999999999999999999 689999999999999876 557899999999999999999999999999999999


Q ss_pred             cccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        269 RVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       269 ~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      ++++. +++.+.+.+++++|++.+|.+++.+|++++....
T Consensus       220 ~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~  258 (302)
T PRK08321        220 AVVPH-AELETEALEWAREINGKSPTAMRMLKYAFNLTDD  258 (302)
T ss_pred             EeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Confidence            99998 9999999999999999999999999999987544

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-38  Score=269.52  Aligned_cols=192  Identities=22%  Similarity=0.269  Sum_probs=168.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|++|..++        .+|.+++++++.| ++++|||+|.|+.||+|.|++....             
T Consensus        10 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~-------------   67 (243)
T PRK07854         10 VLTIELQRPERRNALNAELC--------EELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY-------------   67 (243)
T ss_pred             EEEEEeCCCccccCCCHHHH--------HHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh-------------
Confidence            78889999999999999998        9999999998865 8999999999999999999863100             


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 ..                       .+...+..++..+.++|||+||+|+|+|
T Consensus        68 ---------------------------~~-----------------------~~~~~~~~~~~~l~~~~kP~Iaav~G~a   97 (243)
T PRK07854         68 ---------------------------AD-----------------------DFPDALIEMLHAIDAAPVPVIAAINGPA   97 (243)
T ss_pred             ---------------------------HH-----------------------HHHHHHHHHHHHHHhCCCCEEEEecCcc
Confidence                                       00                       0011123456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|++++++||+++|+|+++++.   
T Consensus        98 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~---  174 (243)
T PRK07854         98 IGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTL---  174 (243)
T ss_pred             cccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccCH---
Confidence            999999999999999999999999999999999875 4689999999999999999999999999999999999653   


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                       . .+.+++++|++.||.++..+|+.+++.
T Consensus       175 -~-~a~~~a~~l~~~~~~a~~~~K~~l~~~  202 (243)
T PRK07854        175 -A-DAQAWAAEIAGLAPLALQHAKRVLNDD  202 (243)
T ss_pred             -H-HHHHHHHHHHhCCHHHHHHHHHHHHcc
Confidence             2 789999999999999999999999864

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=7e-38  Score=269.60  Aligned_cols=200  Identities=17%  Similarity=0.180  Sum_probs=171.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++  +++++||++|.|+.||+|+|++++.....  .       
T Consensus        14 i~~itlnrp~~~Nal~~~~~--------~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~--~-------   74 (255)
T PRK07112         14 VCFLQLHRPEAQNTINDRLI--------AECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPD--A-------   74 (255)
T ss_pred             EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccc--c-------
Confidence            78899999999999999998        99999999987  46999999999999999999987632000  0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 +.      . .   .          ........++..+.++|||||++|+|+|
T Consensus        75 ---------------------------~~------~-~---~----------~~~~~~~~~~~~l~~~~kPvIaav~G~a  107 (255)
T PRK07112         75 ---------------------------GR------A-D---L----------IDAEPLYDLWHRLATGPYVTIAHVRGKV  107 (255)
T ss_pred             ---------------------------ch------h-h---h----------hhHHHHHHHHHHHHcCCCCEEEEEecEE
Confidence                                       00      0 0   0          0001123466678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|++|.+++..+++++|..++++++++|+.++++||+++|+|++++++ ++.
T Consensus       108 ~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~  186 (255)
T PRK07112        108 NAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVLPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGAN-SDT  186 (255)
T ss_pred             EcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhhHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCc-HHH
Confidence            9999999999999999999999999999999998766789999999999999999999999999999999999987 553


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                        .+.++++++++.+|.+++.+|+.++..
T Consensus       187 --~~~~~a~~l~~~~p~a~~~~K~~~~~~  213 (255)
T PRK07112        187 --LLRKHLLRLRCLNKAAVARYKSYASTL  213 (255)
T ss_pred             --HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence              578899999999999999999999865

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=8.9e-38  Score=281.11  Aligned_cols=214  Identities=18%  Similarity=0.197  Sum_probs=179.9

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      ++.+++.. |+    ++++|||||+++|++|..|+        .+|.++|..++.|+++++|||+|.|+.||+|+|++++
T Consensus        36 ~~~V~~e~~g~----v~~ItLNRP~~lNALs~~m~--------~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l  103 (401)
T PLN02157         36 DYQVLVEGSGC----SRTAILNRPPALNALTTHMG--------YRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSL  103 (401)
T ss_pred             CCceEEEEECC----EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHH
Confidence            34555554 54    88999999999999999999        9999999999999999999999999999999999876


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      .....                                    .+.       ....           ..++.....+...+
T Consensus       104 ~~~~~------------------------------------~~~-------~~~~-----------~~~~~~~~~l~~~i  129 (401)
T PLN02157        104 YHLRK------------------------------------RGS-------PDAI-----------REFFSSLYSFIYLL  129 (401)
T ss_pred             Hhhcc------------------------------------ccc-------hHHH-----------HHHHHHHHHHHHHH
Confidence            42100                                    000       0000           01122222345568


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|++++ +++++++|. .+++++++|+.++++||
T Consensus       130 ~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA  208 (401)
T PLN02157        130 GTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEM  208 (401)
T ss_pred             HhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHH
Confidence            8999999999999999999999999999999999999999999999999854 789999885 79999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                      +++|++++++++ +++ +.+.+++++++..+|.++..+|+.++..
T Consensus       209 ~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~  251 (401)
T PLN02157        209 LACGLATHYIRS-EEI-PVMEEQLKKLLTDDPSVVESCLEKCAEV  251 (401)
T ss_pred             HHcCCceEEeCH-hHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            999999999999 888 5777999999999999999999998765

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2e-37  Score=268.73  Aligned_cols=215  Identities=13%  Similarity=0.079  Sum_probs=172.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhc-----CCCCeEEEEEcC-CCccccchhhhHHhhhccCchh
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHY-----APGKRVVCVQGD-SAFGFSGMELETLAVDKEGRPK  111 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~-----d~~~~vvvl~g~-g~~~~aG~Dl~~~~~~~~~~~~  111 (315)
                      ++++|+| |+++|+++..++        .+|.+++++++.     |+++++|||+|. |+.||+|+|++++..... .. 
T Consensus        27 ia~itl~-p~~~Nal~~~~~--------~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~-~~-   95 (287)
T PRK08788         27 VMWMYMR-AQPRPCFNLELL--------DDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIR-AG-   95 (287)
T ss_pred             EEEEEEC-CCCCCCCCHHHH--------HHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcc-cc-
Confidence            8888895 999999999998        999999999998     899999999999 788999999987531000 00 


Q ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEE
Q psy12573        112 LDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILA  191 (315)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa  191 (315)
                                                               +.......       .......+..+.+ ...+|||+||
T Consensus        96 -----------------------------------------~~~~~~~~-------~~~~~~~~~~l~~-~~~~pkPvIA  126 (287)
T PRK08788         96 -----------------------------------------DRDALLAY-------ARACVDGVHAFHR-GFGAGAISIA  126 (287)
T ss_pred             -----------------------------------------chHHHHHH-------HHHHHHHHHHHHH-hcCCCCCEEE
Confidence                                                     00000000       0011111111111 1269999999


Q ss_pred             EEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573        192 IISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRV  270 (315)
Q Consensus       192 ~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v  270 (315)
                      +|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++
T Consensus       127 aV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~v  206 (287)
T PRK08788        127 LVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVL  206 (287)
T ss_pred             EECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEe
Confidence            999999999999999999999999999999999999999875 4789999999999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        271 VSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++. +++.+.+.+++++|+.. |.+...+|+..+.....++++.
T Consensus       207 v~~-~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~  248 (287)
T PRK08788        207 VED-GQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEEL  248 (287)
T ss_pred             cCc-hHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHH
Confidence            999 99999999999999987 7777777777666655555543

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=7.6e-37  Score=267.01  Aligned_cols=207  Identities=17%  Similarity=0.162  Sum_probs=177.8

Q ss_pred             hHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHH
Q psy12573         36 MDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDE  114 (315)
Q Consensus        36 ~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~  114 (315)
                      .+++++|||+|+++|+++..|+        .+|.+++++++.|+++++|||+|.| +.||+|+|++++.....       
T Consensus        36 ~~~A~ItLNRP~k~NAls~~ml--------~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-------  100 (360)
T TIGR03200        36 LYNAWIILDNPKQYNSYTTDMV--------KAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-------  100 (360)
T ss_pred             eEEEEEEECCCCccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-------
Confidence            3467789999999999999998        9999999999999999999999999 58999999986532000       


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                                                    +..                  .+...+...+..++..+..+||||||+|+
T Consensus       101 ------------------------------~~~------------------~~~~~~~~~~~~l~~~i~~~pKPVIAAVn  132 (360)
T TIGR03200       101 ------------------------------GNP------------------QEYRQYMRLFNDMVSAILGCDKPVICRVN  132 (360)
T ss_pred             ------------------------------cCh------------------hHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence                                          000                  00011222234566778899999999999


Q ss_pred             cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      |+|+|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+++++++|+++|+|+++++.
T Consensus       133 G~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~  212 (360)
T TIGR03200       133 GMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA  212 (360)
T ss_pred             CEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCc
Confidence            9999999999999999999999999999999999998854 789999999999999999999999999999999999998


Q ss_pred             chHH------------HHHHHHHHHHHHhCCHH--HHHHHHHHHHHh
Q psy12573        274 NEEL------------ESETKVLTSAILENSRS--VLTLGKQFLYQQ  306 (315)
Q Consensus       274 ~~~~------------~~~~~~~~~~l~~~~~~--a~~~~k~~l~~~  306 (315)
                       +++            ++.+.++.+.+...++.  ++++.|.++++.
T Consensus       213 -~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~  258 (360)
T TIGR03200       213 -LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQG  258 (360)
T ss_pred             -hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcc
Confidence             888            78899999999988887  899999998873

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=8.3e-36  Score=253.80  Aligned_cols=205  Identities=18%  Similarity=0.231  Sum_probs=170.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCC-eEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK-RVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~-~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++.++||+|+. |+++..++        .+|.+++++++.|+++ ++||++|.|+.||+|+|++++... ...+.     
T Consensus        10 v~~i~Lnrp~~-Nal~~~~~--------~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~-~~~~~-----   74 (239)
T PLN02267         10 LFILTLTGDGE-HRLNPTLI--------DSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA-GSAPS-----   74 (239)
T ss_pred             EEEEEeCCCCc-CcCCHHHH--------HHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc-ccCHH-----
Confidence            77889999974 99998888        9999999999998886 478889999999999999865310 00000     


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                          +.              ..+...+..++..+.++|||+||+|+|+
T Consensus        75 ------------------------------------~~--------------~~~~~~~~~~~~~l~~~~kPvIAaV~G~  104 (239)
T PLN02267         75 ------------------------------------RL--------------HLMVAKLRPLVADLISLPMPTIAAVTGH  104 (239)
T ss_pred             ------------------------------------HH--------------HHHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence                                                00              0111223445667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeee-CCceeeCCCccCCCC-CCchHHHHhhhcCHHHH-HHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        197 AAAAGCQLVATCDLAIAT-TASKFSTPGARHGIF-CSTPAVALTRKVPLGVV-RSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~-~~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a-~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      |+|||++|+++||+++++ ++++|++||.++|++ |.++..++++++|..++ ++++++|++++++||+++|+++++++.
T Consensus       105 a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~  184 (239)
T PLN02267        105 ASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDS  184 (239)
T ss_pred             chHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence            999999999999999998 568999999999997 77677789999999998 699999999999999999999999985


Q ss_pred             chHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhh
Q psy12573        274 NEELESETKVLTSAILEN--SRSVLTLGKQFLYQQM  307 (315)
Q Consensus       274 ~~~~~~~~~~~~~~l~~~--~~~a~~~~k~~l~~~~  307 (315)
                      .+++.+.+.++++++++.  ++.++..+|+.+++..
T Consensus       185 ~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~  220 (239)
T PLN02267        185 AEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEV  220 (239)
T ss_pred             HHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHH
Confidence            268999999999999987  5688999999887643

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=1.1e-35  Score=266.78  Aligned_cols=213  Identities=18%  Similarity=0.199  Sum_probs=175.7

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      ++.+++.. ++    ++++|||||+.+|+++..|+        .+|.++|.+++.|+++++|||+|.|+.||+|+|++++
T Consensus         8 ~~~v~~~~~~~----i~~ItLnRP~~lNALs~~m~--------~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l   75 (381)
T PLN02988          8 QSQVLVEEKSS----VRILTLNRPKQLNALSFHMI--------SRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAV   75 (381)
T ss_pred             CCceEEEEECC----EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHH
Confidence            34455543 54    88899999999999999998        9999999999999999999999999999999999876


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      .....                                    .+       +....           ..++.....+...+
T Consensus        76 ~~~~~------------------------------------~~-------~~~~~-----------~~~f~~~~~l~~~i  101 (381)
T PLN02988         76 VRDIE------------------------------------QG-------NWRLG-----------ANFFSDEYMLNYVM  101 (381)
T ss_pred             Hhhhc------------------------------------cc-------chhHH-----------HHHHHHHHHHHHHH
Confidence            42000                                    00       00000           01111111233467


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      ..+|||+||+++|+|+|||++|+++||++++++.++|++||.++|++|+++ +++++++.|. .+++++++|+++++++|
T Consensus       102 ~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA  180 (381)
T PLN02988        102 ATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEM  180 (381)
T ss_pred             HHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHH
Confidence            889999999999999999999999999999999999999999999999885 4788888886 68899999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQ  305 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~  305 (315)
                      +++|++++++++ +++.+.+.+++ +++..+|.++..+|+.+..
T Consensus       181 ~~~GLv~~vv~~-~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~  222 (381)
T PLN02988        181 LACGLATHFVPS-TRLTALEADLC-RIGSNDPTFASTILDAYTQ  222 (381)
T ss_pred             HHcCCceEecCH-hHHHHHHHHHH-HhhccCHHHHHHHHHHhhc
Confidence            999999999999 99999999988 7778889999999988764

>KOG1679|consensus

Probab=100.00  E-value=1.5e-36  Score=240.26  Aligned_cols=225  Identities=21%  Similarity=0.276  Sum_probs=191.8

Q ss_pred             CCceEEeC--CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC-CCccccchhhh
Q psy12573         24 DNCIIVGE--GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-SAFGFSGMELE  100 (315)
Q Consensus        24 ~~~~~~~~--g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~-g~~~~aG~Dl~  100 (315)
                      .+.+.+..  |.++ .|..+-+|||..+|++...++        ..+.+.|+++..|+.+|||+|.+. .+.||+|+|++
T Consensus        26 ~~Ev~v~~L~g~~~-GItvl~mNRpa~kNsl~r~~~--------~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLK   96 (291)
T KOG1679|consen   26 ANEVFVRRLTGKDE-GITILNMNRPAKKNSLGRVFV--------KQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLK   96 (291)
T ss_pred             CceeeeeeccCCCC-CeEEEecCChhhhccHHHHHH--------HHHHHHHHHHhhCCceeEEEEecCCCceeecCcchH
Confidence            44555553  4333 466667999999999999888        999999999999999999999765 56788899988


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML  180 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (315)
                      +-..  .                                                        +..+...+...+..++.
T Consensus        97 ER~~--M--------------------------------------------------------s~~Ev~~fV~~lR~~~~  118 (291)
T KOG1679|consen   97 ERKT--M--------------------------------------------------------SPSEVTRFVNGLRGLFN  118 (291)
T ss_pred             hhhc--C--------------------------------------------------------CHHHHHHHHHHHHHHHH
Confidence            7542  1                                                        11122245556677788


Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.++|.|+||++.|.++|||++|+++||+++++++++||++|.+++++|+. ++++|+|.+|...+||+++|++.+++.
T Consensus       119 dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~  198 (291)
T KOG1679|consen  119 DIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGA  198 (291)
T ss_pred             HHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccch
Confidence            8899999999999999999999999999999999999999999999999988 458999999999999999999999999


Q ss_pred             HHHHcCccccccCCc---hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        260 DAYNAGLITRVVSSN---EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~---~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      ||...|+||.++..+   |...+.+.++++++..+.|.+++..|.+++++.+.++..+|
T Consensus       199 eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl  257 (291)
T KOG1679|consen  199 EAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGL  257 (291)
T ss_pred             hHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccc
Confidence            999999999999763   36778899999999999999999999999999988876543

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=8.1e-35  Score=282.32  Aligned_cols=190  Identities=19%  Similarity=0.249  Sum_probs=165.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++++......         
T Consensus        17 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~---------   79 (715)
T PRK11730         17 IAELVFDAPGSVNKLDRATL--------ASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAA---------   79 (715)
T ss_pred             EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccC---------
Confidence            88899999999999999998        9999999999999999999999999999999999876320000         


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +-..           ...+......++..+..+|||+||+|+|+|
T Consensus        80 -----------------------------------~~~~-----------~~~~~~~~~~~~~~i~~~~kPvIAav~G~a  113 (715)
T PRK11730         80 -----------------------------------PEEE-----------LSQWLHFANSIFNRLEDLPVPTVAAINGYA  113 (715)
T ss_pred             -----------------------------------CHHH-----------HHHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence                                               0000           001122234456778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|...+++++++|++++++||+++||++++++. ++
T Consensus       114 ~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~  192 (715)
T PRK11730        114 LGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EK  192 (715)
T ss_pred             ehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HH
Confidence            999999999999999999999999999999999875 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhC
Q psy12573        277 LESETKVLTSAILEN  291 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~  291 (315)
                      +.+.+.+++++++..
T Consensus       193 l~~~a~~~a~~la~~  207 (715)
T PRK11730        193 LQEAALALLKQAIAG  207 (715)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999999965

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=9.2e-34  Score=254.93  Aligned_cols=206  Identities=15%  Similarity=0.162  Sum_probs=166.5

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      ++.+++.. ++    ++++|||||+++|+++..|+        .+|..+|..++.|+++++|||+|.|+.||+|+|++.+
T Consensus        41 ~~~v~~e~~~~----~~~ItLNRP~~lNALs~~m~--------~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l  108 (407)
T PLN02851         41 QDQVLVEGRAK----SRAAILNRPSSLNALTIPMV--------ARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSL  108 (407)
T ss_pred             CCCeEEEEECC----EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHH
Confidence            44555544 54    67889999999999999999        9999999999999999999999999999999999877


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      .....                                    .+       +..           ....++.....+...+
T Consensus       109 ~~~~~------------------------------------~~-------~~~-----------~~~~~f~~~~~l~~~i  134 (407)
T PLN02851        109 YHLIN------------------------------------EG-------NVE-----------ECKLFFENLYKFVYLQ  134 (407)
T ss_pred             Hhhcc------------------------------------cc-------chH-----------HHHHHHHHHHHHHHHH
Confidence            43100                                    00       000           0002233344556677


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++|||+||+++|.|+|||++|+++||++++++.++|++||.++|++|++++ ++++++.|.. ++++++||+++++++|
T Consensus       135 ~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA  213 (407)
T PLN02851        135 GTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEM  213 (407)
T ss_pred             HhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHH
Confidence            8999999999999999999999999999999999999999999999999854 7788888874 8999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHH
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTL  298 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~  298 (315)
                      +++|++++++++ +++ +.+.+.+.++...++.++..
T Consensus       214 ~~~GLa~~~v~~-~~l-~~l~~~l~~~~~~~~~~~~~  248 (407)
T PLN02851        214 IACGLATHYCLN-ARL-PLIEERLGKLLTDDPAVIED  248 (407)
T ss_pred             HHCCCceeecCH-hhH-HHHHHHHHhhccCCHHHHHH
Confidence            999999999999 877 55666666665555554433

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=7.1e-34  Score=275.78  Aligned_cols=211  Identities=18%  Similarity=0.213  Sum_probs=179.1

Q ss_pred             hhhhhhccC-CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHH
Q psy12573         38 IGRSLLLNN-LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEI  115 (315)
Q Consensus        38 ~~~~~l~~~-~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~  115 (315)
                      ++++|||+| +++|+++..++        .+|.+++++++.|+++|+|||+|.+ +.||+|+|++++....  ...    
T Consensus        16 va~itlnrp~~~~Nal~~~~~--------~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~--~~~----   81 (708)
T PRK11154         16 IAVITIDVPGEKMNTLKAEFA--------EQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACK--TAQ----   81 (708)
T ss_pred             EEEEEECCCCCCCcCCCHHHH--------HHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccC--CHH----
Confidence            788999999 69999999998        9999999999999999999999875 7899999998763200  000    


Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                                                           +..              .+......++..+.++|||+||+|+|
T Consensus        82 -------------------------------------~~~--------------~~~~~~~~~~~~i~~~~kPvIAaV~G  110 (708)
T PRK11154         82 -------------------------------------EAE--------------ALARQGQQLFAEIEALPIPVVAAIHG  110 (708)
T ss_pred             -------------------------------------HHH--------------HHHHHHHHHHHHHHhCCCCEEEEECC
Confidence                                                 000              11112334667788999999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCC--ceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccC
Q psy12573        196 VAAAAGCQLVATCDLAIATTA--SKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS  272 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~  272 (315)
                      +|+|||++|+++||+++++++  ++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|+++++++
T Consensus       111 ~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~  190 (708)
T PRK11154        111 ACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP  190 (708)
T ss_pred             eeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecC
Confidence            999999999999999999986  49999999999999875 578999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHH-------------HHhCCHH----------------------HHHHHHHHHHHhhCCChhhh
Q psy12573        273 SNEELESETKVLTSA-------------ILENSRS----------------------VLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       273 ~~~~~~~~~~~~~~~-------------l~~~~~~----------------------a~~~~k~~l~~~~~~~l~~~  314 (315)
                      . +++.+.+.+++++             ++..+|.                      ++..+|++++.....+++++
T Consensus       191 ~-~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~  266 (708)
T PRK11154        191 H-SILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSG  266 (708)
T ss_pred             h-HHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHH
Confidence            9 9999999999988             4555553                      78999999999888777665

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=1.6e-33  Score=272.61  Aligned_cols=212  Identities=17%  Similarity=0.212  Sum_probs=176.8

Q ss_pred             hhhhhhccC-CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE-EcCCCccccchhhhHHhhhccCchhHHHH
Q psy12573         38 IGRSLLLNN-LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV-QGDSAFGFSGMELETLAVDKEGRPKLDEI  115 (315)
Q Consensus        38 ~~~~~l~~~-~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl-~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~  115 (315)
                      ++++|||+| +++|+++..++        .+|.+++++++.|+++|+||| +|.|+.||+|+|++++... .+..     
T Consensus        11 Va~itlnrp~~~~Nal~~~~~--------~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~-~~~~-----   76 (699)
T TIGR02440        11 IAILTIDVPGEKMNTLKAEFA--------DQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC-QTAG-----   76 (699)
T ss_pred             EEEEEECCCCCCCCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc-CChh-----
Confidence            788899999 68999999998        999999999999999999886 6889999999999876320 0000     


Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                                                           +..              .+......++..+.++|||+||+|||
T Consensus        77 -------------------------------------~~~--------------~~~~~~~~~~~~l~~~~kPvIAaVnG  105 (699)
T TIGR02440        77 -------------------------------------EAK--------------ALAQQGQVLFAELEALPIPVVAAIHG  105 (699)
T ss_pred             -------------------------------------HHH--------------HHHHHHHHHHHHHHhCCCCEEEEECC
Confidence                                                 000              11112234566788999999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCC--ceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccC
Q psy12573        196 VAAAAGCQLVATCDLAIATTA--SKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS  272 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~  272 (315)
                      +|+|||++|+++||+++++++  ++|++||+++|++|+++ .+++++++|...+++++++|+.+++++|+++|+++++++
T Consensus       106 ~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~  185 (699)
T TIGR02440       106 ACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVP  185 (699)
T ss_pred             EeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecC
Confidence            999999999999999999975  79999999999999885 478999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHH-------------HHHhCCHHH----------------------HHHHHHHHHHhhCCChhhhC
Q psy12573        273 SNEELESETKVLTS-------------AILENSRSV----------------------LTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       273 ~~~~~~~~~~~~~~-------------~l~~~~~~a----------------------~~~~k~~l~~~~~~~l~~~l  315 (315)
                      . +++.+.+.++++             +++..+|.+                      ...+|+.++.+...+++++|
T Consensus       186 ~-~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l  262 (699)
T TIGR02440       186 Q-SILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGL  262 (699)
T ss_pred             h-hHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHH
Confidence            9 999999999997             566666655                      44556668888777777653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG0016|consensus

Probab=100.00  E-value=2.4e-33  Score=229.42  Aligned_cols=227  Identities=18%  Similarity=0.235  Sum_probs=190.7

Q ss_pred             CCCceEEeC-CChhhHhhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhh
Q psy12573         23 PDNCIIVGE-GANTMDIGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE  100 (315)
Q Consensus        23 ~~~~~~~~~-g~~~~~~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~  100 (315)
                      ..+.++++. ++    +.++.++ +|++.|+++.++|        .++..+|.....|+++.+++++|.|+.||+|.|+.
T Consensus         5 ~~~~~vv~~~~g----~~~I~~~~~Pkk~Nal~~e~y--------~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~   72 (266)
T KOG0016|consen    5 RYREIVVTRENG----PFFIALNIRPKKKNALNREDY--------VYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFS   72 (266)
T ss_pred             cccceEEEecCC----cEEEEecCCCcccccccHHHH--------HHHHHHHHHhhcccceEEEEEecCccEEeeccccc
Confidence            345566665 55    4566688 9999999999999        99999999999999999999999999999999998


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML  180 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (315)
                      .+.....                                            .|...-.+.       .......+.....
T Consensus        73 ~~~~~~~--------------------------------------------~d~~~~~~~-------~~~~v~~~~~~v~  101 (266)
T KOG0016|consen   73 PFAKALD--------------------------------------------DDANEESDK-------ASKFVKNVSCFVN  101 (266)
T ss_pred             hhhhcCC--------------------------------------------Ccccccchh-------hHHHHHHHHHHHH
Confidence            7754111                                            111110000       0011112223556


Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+..+|||+||.|+|+++|.|..+.-.||+++|+|.++|..|+..+|..|++++ +.+++++|...|.|+++.|++++++
T Consensus       102 ~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~  181 (266)
T KOG0016|consen  102 TFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQ  181 (266)
T ss_pred             HHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHH
Confidence            678999999999999999999999999999999999999999999999999855 7899999999999999999999999


Q ss_pred             HHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      ||.+.|+|+++++. +.+.+.+..-++++++.+|.+++..|++++......|.+
T Consensus       182 Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~  234 (266)
T KOG0016|consen  182 EACEKGLVSKIFPA-ETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIK  234 (266)
T ss_pred             HHHhcCchhhhcCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 999999999999999999999999999999877666544

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=2.9e-33  Score=221.90  Aligned_cols=216  Identities=22%  Similarity=0.264  Sum_probs=179.0

Q ss_pred             CCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC--C-Cccccchhhh
Q psy12573         24 DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD--S-AFGFSGMELE  100 (315)
Q Consensus        24 ~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~--g-~~~~aG~Dl~  100 (315)
                      -++|+....-.  .++.||+|||+.+|++.|...        .+|..++..+..|+++-||+|||.  | ..||+|+|-+
T Consensus        17 y~dI~Y~~~~~--giakItinRPevrNAfrP~TV--------~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~   86 (282)
T COG0447          17 YEDITYEKSVD--GIAKITINRPEVRNAFRPKTV--------DEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQK   86 (282)
T ss_pred             cceeEEeeccC--ceEEEEecChhhhccCCCccH--------HHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCce
Confidence            35555543211  389999999999999999998        999999999999999999999974  4 6678899854


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML  180 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (315)
                      .--.                                        +..+        ..+.   ..+.. .    .-.+.+
T Consensus        87 vRg~----------------------------------------~~gY--------~~d~---~~~rL-n----vLdlQr  110 (282)
T COG0447          87 VRGD----------------------------------------SGGY--------VDDD---GIPRL-N----VLDLQR  110 (282)
T ss_pred             eccc----------------------------------------CCCc--------cCCc---cCccc-c----hhhHHH
Confidence            2211                                        0000        0000   01111 1    113455


Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .++.+||||||.|+|+++|||-.|-+.||+.+|++.++|+....++|-+..+ ++..|++.+|...|+|+.+.++.++|+
T Consensus       111 lIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkArEIwfLcR~Y~A~  190 (282)
T COG0447         111 LIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAE  190 (282)
T ss_pred             HHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhhHHhhhhhhhccHH
Confidence            7889999999999999999999999999999999999999999999998665 778899999999999999999999999


Q ss_pred             HHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                      ||+++|+||.|+|. ++|++++.++++.+.++||.+++..|.+++..
T Consensus       191 eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad  236 (282)
T COG0447         191 EALDMGLVNTVVPH-ADLEKETVQWAREMLAKSPTALRMLKAAFNAD  236 (282)
T ss_pred             HHHhcCceeeeccH-HHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence            99999999999999 99999999999999999999999999988764

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.98  E-value=4.7e-32  Score=262.48  Aligned_cols=188  Identities=21%  Similarity=0.241  Sum_probs=163.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||+|++.|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|++++...... +       
T Consensus        17 va~Itlnrp~~~Nal~~~~~--------~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~-------   80 (714)
T TIGR02437        17 IAELKFDAPGSVNKFDRATL--------ASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFAL-P-------   80 (714)
T ss_pred             EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccC-C-------
Confidence            78889999999999999998        9999999999999999999999999999999999876420000 0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                          ..           +...+......++..+..+|||+||+|+|+|
T Consensus        81 ------------------------------------~~-----------~~~~~~~~~~~~~~~i~~~pkPvIAai~G~a  113 (714)
T TIGR02437        81 ------------------------------------DA-----------ELIQWLLFANSIFNKLEDLPVPTVAAINGIA  113 (714)
T ss_pred             ------------------------------------HH-----------HHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                                00           0001122234566788899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+|+++++++|++||+++|++|+++ ++++++++|...+++++++|+.+++++|+++|+++++++. ++
T Consensus       114 lGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~  192 (714)
T TIGR02437       114 LGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTA-DK  192 (714)
T ss_pred             ecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hH
Confidence            999999999999999999999999999999999985 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHH
Q psy12573        277 LESETKVLTSAIL  289 (315)
Q Consensus       277 ~~~~~~~~~~~l~  289 (315)
                      +.+.+.++++++.
T Consensus       193 l~~~a~~~a~~~~  205 (714)
T TIGR02437       193 LGAAALQLLKDAI  205 (714)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999997744

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.97  E-value=6.9e-31  Score=254.89  Aligned_cols=199  Identities=17%  Similarity=0.222  Sum_probs=161.8

Q ss_pred             CCCCceEEeC-CChhhHhhhhhhccCC-CcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE-EEEcCCCccccchh
Q psy12573         22 IPDNCIIVGE-GANTMDIGRSLLLNNL-PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV-CVQGDSAFGFSGME   98 (315)
Q Consensus        22 ~~~~~~~~~~-g~~~~~~~~~~l~~~~-~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv-vl~g~g~~~~aG~D   98 (315)
                      +..+.+.+.. ++    ++.+|||+|+ +.|+++..++        .+|.+++++++.|+++|+| +++|.|+.||+|+|
T Consensus        10 ~~~~~~~~~~~~g----Va~itlnrP~~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~D   77 (737)
T TIGR02441        10 MARTHRHYEVKGD----VAVVKIDSPNSKVNTLSKELF--------AEFKEVMNELWTNEAIKSAVLISGKPGSFVAGAD   77 (737)
T ss_pred             CCCCeEEEEEECC----EEEEEEcCCCCCCCCCCHHHH--------HHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcC
Confidence            3445554443 54    8889999998 5899999888        9999999999999999965 56999999999999


Q ss_pred             hhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHH
Q psy12573         99 LETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDL  178 (315)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~  178 (315)
                      ++++... .+ ..                                                       +...+......+
T Consensus        78 l~~~~~~-~~-~~-------------------------------------------------------~~~~~~~~~~~l  100 (737)
T TIGR02441        78 IQMIAAC-KT-AQ-------------------------------------------------------EVTQLSQEGQEM  100 (737)
T ss_pred             HHHHhcc-CC-hH-------------------------------------------------------HHHHHHHHHHHH
Confidence            9877420 00 00                                                       000122233456


Q ss_pred             HHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCC--ceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCC
Q psy12573        179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIP  255 (315)
Q Consensus       179 ~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~  255 (315)
                      +..+.++||||||+|+|+|+|||++|+++||+++++++  ++|++||+++|++|+++ ++++++++|...+++++++|++
T Consensus       101 ~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~  180 (737)
T TIGR02441       101 FERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKK  180 (737)
T ss_pred             HHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCc
Confidence            77889999999999999999999999999999999987  58999999999999885 4789999999999999999999


Q ss_pred             CCHHHHHHcCccccccCCc------------hHHHHHHHHHHHHHH
Q psy12573        256 ISAQDAYNAGLITRVVSSN------------EELESETKVLTSAIL  289 (315)
Q Consensus       256 ~~a~~a~~~Glv~~v~~~~------------~~~~~~~~~~~~~l~  289 (315)
                      +++++|+++|+|+++++..            +++.+.+.+++.+++
T Consensus       181 i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~  226 (737)
T TIGR02441       181 IRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLA  226 (737)
T ss_pred             CCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhh
Confidence            9999999999999999851            346677777776654

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=99.97  E-value=1e-30  Score=217.13  Aligned_cols=185  Identities=29%  Similarity=0.401  Sum_probs=162.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.++||+|++.|+++..++        .+|.++++.++.|+++++|||+|.|+.||+|.|++++.....          
T Consensus         9 i~~i~l~~~~~~N~~~~~~~--------~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~----------   70 (195)
T cd06558           9 VATITLNRPEKRNALSLEML--------DELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSD----------   70 (195)
T ss_pred             EEEEEECCccccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccc----------
Confidence            67788999999999999888        999999999999999999999999999999999998753100          


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 ..      +             ....+...+..++..+..+|||+|++++|++
T Consensus        71 ---------------------------~~------~-------------~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a  104 (195)
T cd06558          71 ---------------------------AG------E-------------EARAFIRELQELLRALLRLPKPVIAAVNGAA  104 (195)
T ss_pred             ---------------------------cc------h-------------hHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence                                       00      0             0013344556777888999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      .|+|++++++||++++++.++|++||.++|++|.. ..+.+.+++|...+++++++|+.++++||+++|+++++++. ++
T Consensus       105 ~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~  183 (195)
T cd06558         105 LGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPD-EE  183 (195)
T ss_pred             ecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCh-hH
Confidence            99999999999999999999999999999999766 45789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHH
Q psy12573        277 LESETKVLTSA  287 (315)
Q Consensus       277 ~~~~~~~~~~~  287 (315)
                      +.+.+.+++++
T Consensus       184 l~~~a~~~a~~  194 (195)
T cd06558         184 LLAAALELARR  194 (195)
T ss_pred             HHHHHHHHHhh
Confidence            99998888875

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>KOG1682|consensus

Probab=99.97  E-value=5e-30  Score=201.65  Aligned_cols=208  Identities=40%  Similarity=0.645  Sum_probs=183.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      +..|+|++|+++|.++..|+        .+|.+.|....++.+.|+|||+..|+.|++|.||+++..+.           
T Consensus        42 vR~i~l~npKk~NtLSLaM~--------~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~-----------  102 (287)
T KOG1682|consen   42 VREITLNNPKKLNTLSLAMM--------CALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEP-----------  102 (287)
T ss_pred             eeeeeecCccccchhhHHHH--------HHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCc-----------
Confidence            67788999999999998887        99999998888888999999999999999999999986421           


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                       |.|+.             ...+..+...+..++++|.|||+.|+|++
T Consensus       103 ---------------------------------g~d~h-------------aevFqtc~dvmn~Irn~pVPVia~VNG~A  136 (287)
T KOG1682|consen  103 ---------------------------------GSDIH-------------AEVFQTCTDVMNDIRNLPVPVIAKVNGYA  136 (287)
T ss_pred             ---------------------------------cchHH-------------HHHHHHHHHHHHHHhcCCCceEEEecchh
Confidence                                             11211             03444556677789999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      .+.|++|..+||++++++..+|..|...+|++...++..++|.+++..+.+|++||.+++++||+..|++++++|. +++
T Consensus       137 aAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el  215 (287)
T KOG1682|consen  137 AAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPA-EEL  215 (287)
T ss_pred             hhccceEEEeeeEEEEecCccccCCCCceeeEecCcchhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCH-HHH
Confidence            9999999999999999999999999999999977778889999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCCh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNI  311 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l  311 (315)
                      +.++.++++.|...+.......|+........+-
T Consensus       216 ~~e~~~i~~~i~~~srav~slgk~f~y~q~~ms~  249 (287)
T KOG1682|consen  216 DKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQ  249 (287)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999988776655443

>KOG1684|consensus

Probab=99.94  E-value=2e-26  Score=196.50  Aligned_cols=186  Identities=22%  Similarity=0.251  Sum_probs=152.1

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC-CCccccchhhhH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-SAFGFSGMELET  101 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~-g~~~~aG~Dl~~  101 (315)
                      .+.++++. |.    ...+|||||+.+||++.+|.        ..+.-.|.+|+.++.+++||+.|. |+.||+|+|++.
T Consensus        37 ~~~VL~e~~~~----~r~itLNRPKaLNAlnleMv--------~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~  104 (401)
T KOG1684|consen   37 KDQVLVEGKGC----ARVITLNRPKALNALNLEMV--------LSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKA  104 (401)
T ss_pred             CCceEEecCCc----eeEEEecCchhhccccHHHH--------HHHHHHHHhhccCCCceEEEEecCCCceeecCccHHH
Confidence            45566655 44    46678999999999999998        999999999999999999999888 677888999986


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573        102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS  181 (315)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (315)
                      ......+                                                   .   ..++.+.++..-..+...
T Consensus       105 ~ae~~~d---------------------------------------------------~---~~~~~~~fF~~eYsl~~~  130 (401)
T KOG1684|consen  105 VAESIKD---------------------------------------------------K---ETPEVKKFFTEEYSLNHL  130 (401)
T ss_pred             HHHHhhc---------------------------------------------------C---CchHHHHHHHHHHHHHHH
Confidence            5431000                                                   0   011122445555567778


Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      +....||.||.++|-.+|||+.|...+.+|||+|.+.|.+||..+|+.|++++ +.+++.-| .....+-+||.++++.+
T Consensus       131 igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD  209 (401)
T KOG1684|consen  131 IGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGAD  209 (401)
T ss_pred             HHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchH
Confidence            88999999999999999999999999999999999999999999999999966 56666555 78889999999999999


Q ss_pred             HHHcCccccccCCchHH
Q psy12573        261 AYNAGLITRVVSSNEEL  277 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~  277 (315)
                      ++..|+.++.+++ +.+
T Consensus       210 ~~~~GlATHyv~S-~~l  225 (401)
T KOG1684|consen  210 ALRCGLATHYVPS-EKL  225 (401)
T ss_pred             HHHhcchhhccch-hhh
Confidence            9999999988876 443

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.93  E-value=7.9e-25  Score=204.12  Aligned_cols=175  Identities=15%  Similarity=0.197  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHH-cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHH-HHHHHHHHHhcCCCcEEEE
Q psy12573        115 IFSTCSDLMLSIL-RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVS-TCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       115 ~~~~~~~~~~~~~-~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~kpvIa~  192 (315)
                      .+..+...+..+. .++...+.++.|   ++|+.||+|.|+..+................ ....+...+..+|||+||+
T Consensus        49 ~l~eL~~al~~~~~~d~~vRvVVLtg---~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAA  125 (546)
T TIGR03222        49 VDIELHDAVQRIRFEHPEVRTVVMTS---GKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAA  125 (546)
T ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEec---CCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            3445667777777 566666666665   2468999999998764321000000001111 1123444567899999999


Q ss_pred             EccccchhhhHHHhhcCeeeeeCC--ceeeCCCcc-CCCCCCchH-HHHh--hhcCHHHHHHHHhcCCCCCHHHHHHcCc
Q psy12573        193 ISGVAAAAGCQLVATCDLAIATTA--SKFSTPGAR-HGIFCSTPA-VALT--RKVPLGVVRSMTITGIPISAQDAYNAGL  266 (315)
Q Consensus       193 v~G~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~-~Gl~~~~~~-~~l~--~~~g~~~a~~~~~~g~~~~a~~a~~~Gl  266 (315)
                      |+|+|+|||++|+++||+++++++  ++|++||++ +|++|.+++ .++.  ++++..++++++++|+.++++||+++|+
T Consensus       126 VnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GL  205 (546)
T TIGR03222       126 VNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRL  205 (546)
T ss_pred             ECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCC
Confidence            999999999999999999999986  799999997 999998855 5565  6899999999999999999999999999


Q ss_pred             cccccCCchHHHHHHHHHHHHHHhCCH
Q psy12573        267 ITRVVSSNEELESETKVLTSAILENSR  293 (315)
Q Consensus       267 v~~v~~~~~~~~~~~~~~~~~l~~~~~  293 (315)
                      |+++++. +++.+.+.+++++|+..||
T Consensus       206 V~~vv~~-~~l~~~a~~lA~~la~~~p  231 (546)
T TIGR03222       206 VDEVVKP-SQFDAAIAERAAELAAQSD  231 (546)
T ss_pred             ceEEeCh-HHHHHHHHHHHHHHHhCCC
Confidence            9999999 9999999999999998877

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.92  E-value=3.9e-24  Score=200.16  Aligned_cols=177  Identities=16%  Similarity=0.207  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHH-cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHH-HHHHHHHHhcCCCcEEE
Q psy12573        114 EIFSTCSDLMLSIL-RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVST-CSDLMLSILRHPVPILA  191 (315)
Q Consensus       114 ~~~~~~~~~~~~~~-~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~kpvIa  191 (315)
                      ..+..+...+..+. .++...+.++.|   ++|+.||+|.|+..+.+...-........... ...+...+.++|||+||
T Consensus        52 ~m~~eL~~al~~~~~~d~~vrvVVLtg---~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA  128 (550)
T PRK08184         52 GVDIELHDALQRIRFEHPEVRTVVVTS---AKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA  128 (550)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEEec---CCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            33445666677766 566666666654   13589999999987643210000000011111 12234466789999999


Q ss_pred             EEccccchhhhHHHhhcCeeeeeCC--ceeeCCCcc-CCCCCCchH-HHHh--hhcCHHHHHHHHhcCCCCCHHHHHHcC
Q psy12573        192 IISGVAAAAGCQLVATCDLAIATTA--SKFSTPGAR-HGIFCSTPA-VALT--RKVPLGVVRSMTITGIPISAQDAYNAG  265 (315)
Q Consensus       192 ~v~G~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~-~Gl~~~~~~-~~l~--~~~g~~~a~~~~~~g~~~~a~~a~~~G  265 (315)
                      +|+|+|+|||++|+++||+++++++  ++|++||.+ +|++|.+++ .++.  ++++...+++++++|+.++++||+++|
T Consensus       129 AVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~G  208 (550)
T PRK08184        129 AVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWR  208 (550)
T ss_pred             EECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcC
Confidence            9999999999999999999999987  899999997 999998754 5676  679999999999999999999999999


Q ss_pred             ccccccCCchHHHHHHHHHHHHHHhCCHH
Q psy12573        266 LITRVVSSNEELESETKVLTSAILENSRS  294 (315)
Q Consensus       266 lv~~v~~~~~~~~~~~~~~~~~l~~~~~~  294 (315)
                      +|+++++. +++.+.+.+++++|+.++|.
T Consensus       209 LVd~vv~~-d~l~~~a~~~A~~ia~~~~~  236 (550)
T PRK08184        209 LVDEVVKP-SKFDAKVAERAAELAAASDR  236 (550)
T ss_pred             CccEeeCH-HHHHHHHHHHHHHHHhCCCC
Confidence            99999999 99999999999999988774

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.65  E-value=1.6e-15  Score=123.59  Aligned_cols=140  Identities=14%  Similarity=0.099  Sum_probs=108.3

Q ss_pred             HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573         66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG  145 (315)
Q Consensus        66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G  145 (315)
                      .+|.+++.+++.|+++++|||+++    |.|+|+....                                          
T Consensus        25 ~~l~~~l~~a~~d~~v~~vvl~~~----~~gg~~~~~~------------------------------------------   58 (177)
T cd07014          25 DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTASE------------------------------------------   58 (177)
T ss_pred             HHHHHHHHHHhcCCCceEEEEEee----CCCcCHHHHH------------------------------------------
Confidence            899999999999999999999873    5555543110                                          


Q ss_pred             chhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc
Q psy12573        146 CQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR  225 (315)
Q Consensus       146 ~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~  225 (315)
                                                  .+...+..+.+++|||||+++|.+.|+|++|+++||++++++.++|+++.+.
T Consensus        59 ----------------------------~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~  110 (177)
T cd07014          59 ----------------------------VIRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIF  110 (177)
T ss_pred             ----------------------------HHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechH
Confidence                                        0122344566789999999999999999999999999999999999998776


Q ss_pred             CCCCCCch-HH--------HHhhhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHH
Q psy12573        226 HGIFCSTP-AV--------ALTRKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESE  280 (315)
Q Consensus       226 ~Gl~~~~~-~~--------~l~~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~  280 (315)
                      .+..+... ..        .+++..+  ....++++..|..+++++|++.|||+++.+. +++.+.
T Consensus       111 ~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~-~e~~~~  175 (177)
T cd07014         111 GVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF-DDAVAK  175 (177)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCH-HHHHHH
Confidence            65321110 01        2444444  6788999999999999999999999999987 776543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=99.62  E-value=5.5e-15  Score=123.02  Aligned_cols=95  Identities=25%  Similarity=0.333  Sum_probs=87.6

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      ++.|++|+++++.|++.+|+|.+++.| |.+..|.++. +..+.|+.++++..+++|||++|.+++++++.    |+.+|
T Consensus         4 ~~~~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~----p~~~v   78 (202)
T cd02006           4 DDVPIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQM-LHVYKPRHWINCGQAGPLGWTVPAALGVAAAD----PDRQV   78 (202)
T ss_pred             CCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-cCcCCCCeEEccCCccchhhhhHHHHhHHhhC----CCCeE
Confidence            566899999999999999999999999 8888888888 88888899999988999999999999999985    88899


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+|+|||++.+++++|.++.+
T Consensus        79 v~i~GDG~f~m~~~eL~Ta~~   99 (202)
T cd02006          79 VALSGDYDFQFMIEELAVGAQ   99 (202)
T ss_pred             EEEEeChHhhccHHHHHHHHH
Confidence            999999999999999999876

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=99.60  E-value=1.4e-14  Score=119.84  Aligned_cols=93  Identities=25%  Similarity=0.394  Sum_probs=85.7

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      +|++|+++++.|++.+++|.+++.| |++..|..++ +..+.|.+++++..+++|||++|.+++++++.    |+.+||+
T Consensus         2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----p~r~vv~   76 (196)
T cd02013           2 NPMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSY-LRFEKPRSFIAPLSFGNCGYALPAIIGAKAAA----PDRPVVA   76 (196)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHh-cCcCCCCeEEcCCCCcccccHHHHHHHHHHhC----CCCcEEE
Confidence            6799999999999999999999999 8878888887 88889999999989999999999999999985    8889999


Q ss_pred             EEcCCCccccchhhhHHhh
Q psy12573         86 VQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~  104 (315)
                      ++|||++.++.++|.++.+
T Consensus        77 i~GDG~f~m~~~eL~Ta~~   95 (196)
T cd02013          77 IAGDGAWGMSMMEIMTAVR   95 (196)
T ss_pred             EEcchHHhccHHHHHHHHH
Confidence            9999999999999998765

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.58  E-value=1.3e-14  Score=119.08  Aligned_cols=102  Identities=17%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             HHHHHHhcCCCcEEEEEc---cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc---------------hHHHHh
Q psy12573        177 DLMLSILRHPVPILAIIS---GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST---------------PAVALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~---G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~---------------~~~~l~  238 (315)
                      .++..+..+|||||++++   |+|.++|+.++++||++++++.++|+.++...+..+..               ....++
T Consensus        49 ~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (187)
T cd07020          49 EIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLA  128 (187)
T ss_pred             HHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            355567789999999999   99999999999999999999999999999885544322               122577


Q ss_pred             hhcCH--HHHHHHHhcCCCCCHHHHHHcCccccccCCch-HHHH
Q psy12573        239 RKVPL--GVVRSMTITGIPISAQDAYNAGLITRVVSSNE-ELES  279 (315)
Q Consensus       239 ~~~g~--~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~-~~~~  279 (315)
                      ++.|.  ..+++++.+|+.++++||+++|++|+++++ + ++.+
T Consensus       129 ~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~-~~~~~~  171 (187)
T cd07020         129 ELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAAD-LNELLK  171 (187)
T ss_pred             HHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCC-HHHHHH
Confidence            78887  689999999999999999999999999988 4 4543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=99.54  E-value=1.4e-13  Score=113.21  Aligned_cols=91  Identities=31%  Similarity=0.487  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy12573          9 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ   87 (315)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~   87 (315)
                      ++|+++++.|++.+|+|.+++.| |.+..|..++ +..+.+.+++++..+++||+++|.+++.++..    ++.+||+++
T Consensus         1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~i~   75 (186)
T cd02015           1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQY-YRFKKPRSWLTSGGLGTMGFGLPAAIGAKVAR----PDKTVICID   75 (186)
T ss_pred             CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHh-cccCCCCeEEeCCCccchhchHHHHHHHHHhC----CCCeEEEEE
Confidence            57889999999999999999999 7777888887 88889999999999999999999999999985    788999999


Q ss_pred             cCCCccccchhhhHHhh
Q psy12573         88 GDSAFGFSGMELETLAV  104 (315)
Q Consensus        88 g~g~~~~aG~Dl~~~~~  104 (315)
                      |||++.++..+|.+..+
T Consensus        76 GDG~f~~~~~eL~ta~~   92 (186)
T cd02015          76 GDGSFQMNIQELATAAQ   92 (186)
T ss_pred             cccHHhccHHHHHHHHH
Confidence            99999989999888765

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.51  E-value=3.4e-14  Score=128.61  Aligned_cols=177  Identities=14%  Similarity=0.092  Sum_probs=128.0

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      .+.+...+.++++|+|++++|+++|+|..++.+||++++++.++|++|+.+ |++++++..+.. .+++        |. 
T Consensus       122 ~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L-~rl~--------G~-  191 (401)
T PLN02157        122 LYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNL-SHLP--------GR-  191 (401)
T ss_pred             HHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHH-HHhh--------hH-
Confidence            344566788999999999999999999999999999999999999999999 999988876643 2222        53 


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHH------Hhhhc---C---HHHHHHHHhcCC-CCCHHHHHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVA------LTRKV---P---LGVVRSMTITGI-PISAQDAYN  263 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~------l~~~~---g---~~~a~~~~~~g~-~~~a~~a~~  263 (315)
                      .  |.+|+++++.+.+.++       ..+|++.... ...      +...+   .   ....++.+.... .....-..+
T Consensus       192 ~--a~~L~LTG~~i~A~eA-------~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~  262 (401)
T PLN02157        192 L--GEYLGLTGLKLSGAEM-------LACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRR  262 (401)
T ss_pred             H--HHHHHHcCCcCCHHHH-------HHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHH
Confidence            3  4999999999999999       7778775441 111      11111   1   124455554332 122222234


Q ss_pred             cCccccccCCchHHHH---------------HHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        264 AGLITRVVSSNEELES---------------ETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~---------------~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      ..++++++.+ +++.+               ++.+..+.|.+.+|.+++.+.++++++...+|++||
T Consensus       263 ~~~i~~~f~~-~d~~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~  328 (401)
T PLN02157        263 IDLLEKCFSH-DTVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCL  328 (401)
T ss_pred             HHHHHHHhcC-CCHHHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHH
Confidence            5666777776 55544               344445678899999999999999999999999875

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=99.50  E-value=3e-13  Score=110.04  Aligned_cols=158  Identities=22%  Similarity=0.200  Sum_probs=110.8

Q ss_pred             HHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573         11 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD   89 (315)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~   89 (315)
                      |+++++.|++.+|++.++++| |+++.|..++ +..+++.+++++..+++|||++|.++++++..    |+.+||+|+||
T Consensus         1 p~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GD   75 (177)
T cd02010           1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMARY-YRTYAPNTCLISNGLATMGVALPGAIGAKLVY----PDRKVVAVSGD   75 (177)
T ss_pred             CHHHHHHHHHHCCCCcEEEecCcHHHHHHHHh-CCcCCCCCEEeCCCChhhhhHHHHHHHHHHhC----CCCcEEEEEcc
Confidence            467899999999999999999 8888888887 88888889999999999999999999999985    88899999999


Q ss_pred             CCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcC
Q psy12573         90 SAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK  162 (315)
Q Consensus        90 g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~  162 (315)
                      |++++++++|.++.+...+       +..+    ..+.. ......  .+..          +..+ ...|+..+++.  
T Consensus        76 G~f~m~~~eL~ta~~~~l~vi~vV~NN~~~----g~~~~-~~~~~~--~~~~----------~~~~-~~~d~~~~a~a--  135 (177)
T cd02010          76 GGFMMNSQELETAVRLKIPLVVLIWNDNGY----GLIKW-KQEKEY--GRDS----------GVDF-GNPDFVKYAES--  135 (177)
T ss_pred             hHHHhHHHHHHHHHHHCCCeEEEEEECCcc----hHHHH-HHHHhc--CCcc----------cCcC-CCCCHHHHHHH--
Confidence            9999999999988652211       1100    00000 000000  0000          1122 23577777776  


Q ss_pred             CCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        163 FSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       163 ~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      |+.+..+ ....++...+......+.|.+..|
T Consensus       136 ~G~~~~~v~~~~el~~al~~a~~~~~p~liev  167 (177)
T cd02010         136 FGAKGYRIESADDLLPVLERALAADGVHVIDC  167 (177)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence            5555555 555566666666666778876554

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.49  E-value=2.9e-13  Score=128.03  Aligned_cols=155  Identities=26%  Similarity=0.363  Sum_probs=117.1

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      ...+|+++++.|++.+++|.|+++| |++++|.+++ ++...|++++++..+++||+++|.++++++..    |+.+||+
T Consensus       357 ~~~~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~-~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~----P~r~Vv~  431 (550)
T COG0028         357 DGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARY-FDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAA----PDRKVVA  431 (550)
T ss_pred             CccCHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHh-cccCCCCcEEcCCCCccccchHHHHHHHHhhC----CCCcEEE
Confidence            3347999999999999999999999 9999999999 88889999999999999999999999999996    8899999


Q ss_pred             EEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec--------------ccchhccc
Q psy12573         86 VQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA--------------AGCQLVAT  151 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g--------------~G~~f~~g  151 (315)
                      |+|||+|.|++++|.+..+...  |-                     ++.++|--..|              .+..|...
T Consensus       432 i~GDG~F~m~~qEL~Ta~r~~l--pv---------------------~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~  488 (550)
T COG0028         432 IAGDGGFMMNGQELETAVRYGL--PV---------------------KIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNP  488 (550)
T ss_pred             EEcccHHhccHHHHHHHHHhCC--CE---------------------EEEEEECCccccchHHHHHhcCCCcceeecCCc
Confidence            9999999999999999875221  10                     11111111110              11222222


Q ss_pred             cChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        152 CDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       152 ~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                      . |..+++.  |+....+ ....++...+......++|++..
T Consensus       489 ~-f~klAea--~G~~g~~v~~~~el~~al~~al~~~~p~lid  527 (550)
T COG0028         489 D-FVKLAEA--YGAKGIRVETPEELEEALEEALASDGPVLID  527 (550)
T ss_pred             c-HHHHHHH--cCCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence            2 6666666  6666666 66667777777778888887543

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=99.46  E-value=1.9e-12  Score=105.13  Aligned_cols=89  Identities=57%  Similarity=0.867  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573         11 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD   89 (315)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~   89 (315)
                      |+++++.|++.+|+|.+++.| |.++.|..++ +..+.|..++++..+++||+++|.+++.++..    ++.++|+++||
T Consensus         1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~----~~~~vv~i~GD   75 (172)
T cd02004           1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYI-LRPRKPRHRLDAGTFGTLGVGLGYAIAAALAR----PDKRVVLVEGD   75 (172)
T ss_pred             CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHH-ccccCCCcEecCCCCCcccchHHHHHHHHHhC----CCCeEEEEEcc
Confidence            467899999999999999999 8888888776 88888899999999999999999999999985    78899999999


Q ss_pred             CCccccchhhhHHhh
Q psy12573         90 SAFGFSGMELETLAV  104 (315)
Q Consensus        90 g~~~~aG~Dl~~~~~  104 (315)
                      |++++++.++.+..+
T Consensus        76 G~f~~~~~el~ta~~   90 (172)
T cd02004          76 GAFGFSGMELETAVR   90 (172)
T ss_pred             hhhcCCHHHHHHHHH
Confidence            998888888877654

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=99.44  E-value=2.1e-12  Score=105.34  Aligned_cols=92  Identities=28%  Similarity=0.351  Sum_probs=82.9

Q ss_pred             CCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573          8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV   86 (315)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl   86 (315)
                      |++|+++++.|++.+++|.+++.| |.++.|..+. ++.+.++.++++..+++||+++|.+++.++..    ++.++|++
T Consensus         1 ~~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~----~~~~vv~i   75 (178)
T cd02014           1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAARH-LRMNGKQRFILSGLLATMGNGLPGAIAAKLAY----PDRQVIAL   75 (178)
T ss_pred             CCCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHh-cccCCCCcEEcCCCCchhhhHHHHHHHHHHhC----CCCcEEEE
Confidence            588999999999999999999999 8888888877 88899999999999999999999999999975    77899999


Q ss_pred             EcCCCccccchhhhHHhh
Q psy12573         87 QGDSAFGFSGMELETLAV  104 (315)
Q Consensus        87 ~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|||+++++.+++.++.+
T Consensus        76 ~GDG~f~~~~~el~t~~~   93 (178)
T cd02014          76 SGDGGFAMLMGDLITAVK   93 (178)
T ss_pred             EcchHHHhhHHHHHHHHH
Confidence            999999888888877654

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=99.44  E-value=2e-12  Score=107.82  Aligned_cols=88  Identities=19%  Similarity=0.247  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573         12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS   90 (315)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g   90 (315)
                      .++++.|++.+++|.+++.| |++..|..++ ++.+.|..++++..+++|||++|.+++.+++.    |+.++|+|+|||
T Consensus         2 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDG   76 (205)
T cd02003           2 TEVLGALNEAIGDDDVVINAAGSLPGDLHKL-WRARTPGGYHLEYGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDG   76 (205)
T ss_pred             hhHHHHHHHhCCCCCEEEECCCcchHHHHHh-CCcCCCCcEEcCCCcchhhhHHHHHHHHHHhC----CCCeEEEEEccc
Confidence            36788999999999999999 8899999887 88888899999989999999999999999985    888999999999


Q ss_pred             CccccchhhhHHhh
Q psy12573         91 AFGFSGMELETLAV  104 (315)
Q Consensus        91 ~~~~aG~Dl~~~~~  104 (315)
                      .+.+++++|.++.+
T Consensus        77 sf~m~~~eL~Ta~~   90 (205)
T cd02003          77 SYLMLHSEIVTAVQ   90 (205)
T ss_pred             hhhccHHHHHHHHH
Confidence            99999999998765

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=99.43  E-value=3.2e-13  Score=122.32  Aligned_cols=181  Identities=14%  Similarity=0.122  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      ++..++++...+...+||+|++++|+++|+|..++..||++++++.++|++|+.+ |++++.+..+. +.+++       
T Consensus       123 ~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~-L~rl~-------  194 (407)
T PLN02851        123 FFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYY-LSRLP-------  194 (407)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHH-HHHhc-------
Confidence            3445566777788999999999999999999999999999999999999999999 99998887653 33333       


Q ss_pred             ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHH-------Hhhh-cC-HHHHHHHHhc-CCC--C-CHH
Q psy12573        194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVA-------LTRK-VP-LGVVRSMTIT-GIP--I-SAQ  259 (315)
Q Consensus       194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~-------l~~~-~g-~~~a~~~~~~-g~~--~-~a~  259 (315)
                       |..   |.+|+++++.+.+.++       ..+|++.... ...       +.+. -+ .....+.+.. ...  . ...
T Consensus       195 -g~~---g~~L~LTG~~i~a~eA-------~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  263 (407)
T PLN02851        195 -GYL---GEYLALTGQKLNGVEM-------IACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSS  263 (407)
T ss_pred             -CHH---HHHHHHhCCcCCHHHH-------HHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCccc
Confidence             542   5999999999999999       7778875542 111       1111 11 1111222211 110  0 111


Q ss_pred             HHHHcCccccccCCchHH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        260 DAYNAGLITRVVSSNEEL---------------ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~---------------~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      -......|++++.. +++               .+++++..+.|.+.||.++..+.++++++...+|++||
T Consensus       264 ~~~~~~~I~~~F~~-~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l  333 (407)
T PLN02851        264 VLHKIETIDKCFGH-DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCL  333 (407)
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHH
Confidence            12224566666654 322               24666667889999999999999999999999999875

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=99.43  E-value=1.5e-12  Score=125.55  Aligned_cols=94  Identities=29%  Similarity=0.406  Sum_probs=86.1

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.|++|+++++.|++.+++|.|++.| |++..|.++. ++.+.+..++++..+++|||++|.++++++..    |+.+||
T Consensus       363 ~~~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~----p~~~Vv  437 (597)
T PRK08273        363 ADPVNPQRVFWELSPRLPDNAILTADSGSCANWYARD-LRMRRGMMASLSGTLATMGPAVPYAIAAKFAH----PDRPVI  437 (597)
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-CCCCCCCeEEecCccccccchHHHHHHHHHhC----CCCcEE
Confidence            46899999999999999999999999 8888899887 88888888999999999999999999999985    889999


Q ss_pred             EEEcCCCccccc-hhhhHHhh
Q psy12573         85 CVQGDSAFGFSG-MELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG-~Dl~~~~~  104 (315)
                      +|+|||++++++ ++|.++.+
T Consensus       438 ~i~GDG~f~m~~~~EL~Ta~r  458 (597)
T PRK08273        438 ALVGDGAMQMNGMAELITVAK  458 (597)
T ss_pred             EEEcchhHhccchHHHHHHHH
Confidence            999999999995 99999876

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

Probab=99.42  E-value=4.1e-12  Score=103.97  Aligned_cols=91  Identities=29%  Similarity=0.329  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573          8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV   86 (315)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl   86 (315)
                      |++|.++++.|++.+++|.+++.| |++. |..+. +..++++.++++..+++||+++|.+++.++..    ++.++|++
T Consensus         1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~~~-~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~----~~~~vv~i   74 (183)
T cd02005           1 PLTQARLWQQVQNFLKPNDILVAETGTSW-FGALD-LKLPKGTRFISQPLWGSIGYSVPAALGAALAA----PDRRVILL   74 (183)
T ss_pred             CCCHHHHHHHHHHhcCCCCEEEECCchHH-Hhhhh-ccCCCCCEEEeccchhhHhhhHHHHHHHHHhC----CCCeEEEE
Confidence            789999999999999999999999 6664 66555 77788889999999999999999999999985    77899999


Q ss_pred             EcCCCccccchhhhHHhh
Q psy12573         87 QGDSAFGFSGMELETLAV  104 (315)
Q Consensus        87 ~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|||+++++..++.++.+
T Consensus        75 ~GDG~f~~~~~el~ta~~   92 (183)
T cd02005          75 VGDGSFQMTVQELSTMIR   92 (183)
T ss_pred             ECCchhhccHHHHHHHHH
Confidence            999999888888887654

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=99.41  E-value=2.4e-12  Score=123.84  Aligned_cols=94  Identities=24%  Similarity=0.317  Sum_probs=86.8

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++|+++++.|++.+++|.+++.| |++..|..++ +..+.|+.++++..+++|||++|.+|++++..    |+.+||
T Consensus       366 ~~~l~p~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----pdr~Vv  440 (588)
T TIGR01504       366 NVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQM-LHVYKPRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVV  440 (588)
T ss_pred             CCCcCHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHh-ccccCCCcEEeCCccccccchHhHHHhhhhhC----CCCcEE
Confidence            45799999999999999999999999 7777888887 88888899999999999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||+++|++++|.+..+
T Consensus       441 ~i~GDG~f~m~~~EL~Ta~r  460 (588)
T TIGR01504       441 ALSGDYDFQFMIEELAVGAQ  460 (588)
T ss_pred             EEEcchHhhccHHHHHHHHH
Confidence            99999999999999999876

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=99.41  E-value=4.2e-13  Score=121.17  Aligned_cols=174  Identities=14%  Similarity=0.111  Sum_probs=124.6

Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      +...+..+++|+|++++|+++|+|..++.+||++++++.++|++|+.+ |++++.+..+.. .+++        |. .  
T Consensus        97 l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L-~rl~--------G~-~--  164 (381)
T PLN02988         97 LNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFL-SRLP--------GF-F--  164 (381)
T ss_pred             HHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHH-HHHH--------HH-H--
Confidence            345678899999999999999999999999999999999999999999 999988876643 2322        54 2  


Q ss_pred             hhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HH-------HHhhhc--C---HHHHHHHHhcCCC-CCHHHHHHcCc
Q psy12573        201 GCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AV-------ALTRKV--P---LGVVRSMTITGIP-ISAQDAYNAGL  266 (315)
Q Consensus       201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~-------~l~~~~--g---~~~a~~~~~~g~~-~~a~~a~~~Gl  266 (315)
                      |.+|++++..+.+.++       ..+|++.... ..       .+.+..  .   ...+++.+..... ........+..
T Consensus       165 ~~~l~LTG~~i~a~eA-------~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (381)
T PLN02988        165 GEYVGLTGARLDGAEM-------LACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDV  237 (381)
T ss_pred             HHHHHHcCCCCCHHHH-------HHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Confidence            4899999999999999       7778875541 11       122111  1   1223333321110 01122234567


Q ss_pred             cccccCCchHHH---------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        267 ITRVVSSNEELE---------------SETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       267 v~~v~~~~~~~~---------------~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      |++++.. +++.               +++++..+.|.+.+|.+++.+.++++++...+|.+||
T Consensus       238 I~~~f~~-~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~  300 (381)
T PLN02988        238 IDRCFSR-RTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCL  300 (381)
T ss_pred             HHHHhCC-CCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHH
Confidence            7777765 3322               4666667889999999999999999999999998875

>KOG1185|consensus

Probab=99.40  E-value=5.1e-12  Score=112.80  Aligned_cols=97  Identities=67%  Similarity=1.082  Sum_probs=91.7

Q ss_pred             CCCCCCCHHHHHHHHHhhCC-CCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          4 DESVPLNYYAAIHAVQVSIP-DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      ..+.|++++.+++.|++.+| +|.|+|+||.+++.+++..+....|+..+|.+.+++||.++..+|++++..    |+.+
T Consensus       375 ~~~~pLN~~~~~~~vre~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~----P~~~  450 (571)
T KOG1185|consen  375 KKSTPLNYYQVLQTVRELLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAA----PDRK  450 (571)
T ss_pred             ccCCCCcHHHHHHHHHHhcCCCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhC----CCCe
Confidence            45679999999999999999 889999999999999999999999999999999999999999999999986    9999


Q ss_pred             EEEEEcCCCccccchhhhHHhh
Q psy12573         83 VVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        83 vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+++.||+.|-||+++++++.+
T Consensus       451 V~~veGDsaFGfSaME~ET~vR  472 (571)
T KOG1185|consen  451 VVCVEGDSAFGFSAMELETFVR  472 (571)
T ss_pred             EEEEecCcccCcchhhHHHHHH
Confidence            9999999999999999999976

>PRK12474 hypothetical protein; Provisional

Probab=99.39  E-value=6.1e-12  Score=119.53  Aligned_cols=176  Identities=19%  Similarity=0.204  Sum_probs=116.1

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      .+.|++|+++++.|++.+++|.|++.| |++..|..+. +....|+.++++.. ++|||++|.+++++++.    |+.+|
T Consensus       337 ~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~-~~~~~p~~~~~~~~-gsmG~glpaAiGa~lA~----p~r~v  410 (518)
T PRK12474        337 PKGALNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMS-YDRARPHTHLPLTG-GSIGQGLPLAAGAAVAA----PDRKV  410 (518)
T ss_pred             CCCCcCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHh-hcccCCCCEEccCC-CccCccHHHHHHHHHHC----CCCcE
Confidence            345799999999999999999999999 7778887766 87778888887755 99999999999999985    88999


Q ss_pred             EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE-EeeEEecccchhcc-ccChhhhhhhc
Q psy12573         84 VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI-ISGVAAAAGCQLVA-TCDLAIATTAS  161 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~G~~~g~G~~f~~-g~D~~~~~~~~  161 (315)
                      |+|+|||++.|++++|.++.+...  |-.   +..+||.-+.+.+..+..... ..+.....+..+.. ..|+..+++. 
T Consensus       411 v~i~GDG~f~m~~qEL~Ta~r~~l--pv~---iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a-  484 (518)
T PRK12474        411 VCPQGDGGAAYTMQALWTMARENL--DVT---VVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEG-  484 (518)
T ss_pred             EEEEcCchhcchHHHHHHHHHHCC--CcE---EEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHH-
Confidence            999999999999999999986321  110   001111111110000000000 00000000111211 3588877777 


Q ss_pred             CCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        162 KFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       162 ~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                       |+.+..+ ....++...+......++|.+..|
T Consensus       485 -~G~~~~rv~~~~eL~~al~~a~~~~~p~liev  516 (518)
T PRK12474        485 -LGVEASRATTAEEFSAQYAAAMAQRGPRLIEA  516 (518)
T ss_pred             -CCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEE
Confidence             5666555 556667777777767788887654

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.39  E-value=4.6e-12  Score=121.84  Aligned_cols=94  Identities=28%  Similarity=0.387  Sum_probs=86.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ..+++|.++++.|++.+++|.+++.| |++..|.+++ +..++|..++++..+++|||++|.+|+.++..    |+.+||
T Consensus       369 ~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv  443 (574)
T PRK07979        369 SEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALY-YPFDKPRRWINSGGLGTMGFGLPAALGVKMAL----PEETVV  443 (574)
T ss_pred             CCCcCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHh-cccCCCCeEEeCCCccchhhHHHHHHHHHHhC----CCCeEE
Confidence            34799999999999999999999999 7778888887 88889999999999999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||+|.+++++|.++.+
T Consensus       444 ~i~GDG~f~m~~~eL~Ta~r  463 (574)
T PRK07979        444 CVTGDGSIQMNIQELSTALQ  463 (574)
T ss_pred             EEEcchhhhccHHHHHHHHH
Confidence            99999999999999999876

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.39  E-value=4.2e-12  Score=122.00  Aligned_cols=94  Identities=26%  Similarity=0.379  Sum_probs=86.1

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ..+++|.+++..|++.+++|.+++.| |.+..|..+. +..+.++.++++..+++|||++|.+|++++..    |+.+||
T Consensus       369 ~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv  443 (572)
T PRK08979        369 SERIKPQQVIETLYKLTNGDAYVASDVGQHQMFAALY-YPFDKPRRWINSGGLGTMGFGLPAAMGVKFAM----PDETVV  443 (572)
T ss_pred             CCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHh-cCcCCCCeEEccCCcccccchhhHHHhhhhhC----CCCeEE
Confidence            34799999999999999999999999 7777888877 88899999999999999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++.|++++|.++.+
T Consensus       444 ~i~GDG~f~m~~~EL~Ta~r  463 (572)
T PRK08979        444 CVTGDGSIQMNIQELSTALQ  463 (572)
T ss_pred             EEEcchHhhccHHHHHHHHH
Confidence            99999999999999999876

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.38  E-value=5.8e-12  Score=121.14  Aligned_cols=94  Identities=22%  Similarity=0.354  Sum_probs=85.8

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++|+++++.|++.+|+|.|++.| |++..|..++ +..++|+.++++..+++|||++|.++++++..    |+.+||
T Consensus       371 ~~~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~----p~r~Vv  445 (574)
T PRK06466        371 GGIIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQY-YKFNKPNRWINSGGLGTMGFGLPAAMGVKLAF----PDQDVA  445 (574)
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-ccccCCCcEEcCCCcchhhchHHHHHHHHHhC----CCCeEE
Confidence            45799999999999999999999999 7777888777 88888999999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++.+++++|.+..+
T Consensus       446 ~i~GDG~f~m~~~eL~Ta~r  465 (574)
T PRK06466        446 CVTGEGSIQMNIQELSTCLQ  465 (574)
T ss_pred             EEEcchhhhccHHHHHHHHH
Confidence            99999999999999999876

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=99.38  E-value=7e-12  Score=120.72  Aligned_cols=94  Identities=23%  Similarity=0.335  Sum_probs=86.6

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++|+++++.|++.+++|.|++.| |++..|..++ +..+.|+.++++..+++|||++|.++++++..    |+.+||
T Consensus       378 ~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~Vv  452 (579)
T TIGR03457       378 GNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSY-LRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAA----PDRPVV  452 (579)
T ss_pred             CCCcCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHh-cCcCCCCeEEcCCccccccchHHHHHhhhhhC----CCCcEE
Confidence            45799999999999999999999999 8888888877 88899999999988999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||+|+|++++|.+..+
T Consensus       453 ~i~GDG~f~m~~~eL~Tavr  472 (579)
T TIGR03457       453 AYAGDGAWGMSMNEIMTAVR  472 (579)
T ss_pred             EEEcchHHhccHHHHHHHHH
Confidence            99999999999999999876

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.38  E-value=5.8e-12  Score=121.38  Aligned_cols=165  Identities=18%  Similarity=0.175  Sum_probs=116.0

Q ss_pred             CCCCCHHHHHHHHHhhCC-CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          6 SVPLNYYAAIHAVQVSIP-DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      ..+++|+++++.|++.++ +|.+++.| |++..|..++ +..++|..++++..+++|||++|.++++++..    |+.+|
T Consensus       377 ~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~V  451 (595)
T PRK09107        377 DDVIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQF-FGFEEPNRWMTSGGLGTMGYGLPAALGVQIAH----PDALV  451 (595)
T ss_pred             CCCcCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHh-cccCCCCeEEcCCCchhhhhhHHHHHHHHHhC----CCCeE
Confidence            457999999999999997 58888889 7777888887 98999999999999999999999999999985    88899


Q ss_pred             EEEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI  156 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~  156 (315)
                      |+|+|||++++++++|.++.+..-+       +.. ...+.....    ... ... .         .+..+....|+..
T Consensus       452 v~i~GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~-y~~i~~~q~----~~~-~~~-~---------~~~~~~~~~d~~~  515 (595)
T PRK09107        452 IDIAGDASIQMCIQEMSTAVQYNLPVKIFILNNQY-MGMVRQWQQ----LLH-GNR-L---------SHSYTEAMPDFVK  515 (595)
T ss_pred             EEEEcCchhhccHHHHHHHHHhCCCeEEEEEeCCc-cHHHHHHHH----HHh-CCc-c---------ccccCCCCCCHHH
Confidence            9999999999999999998762211       000 001110000    000 000 0         0111111258887


Q ss_pred             hhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        157 ATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       157 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      +++.  |+....+ ....++...+.......+|.+..|
T Consensus       516 lA~a--~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV  551 (595)
T PRK09107        516 LAEA--YGAVGIRCEKPGDLDDAIQEMIDVDKPVIFDC  551 (595)
T ss_pred             HHHH--CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence            7776  5666555 556667777777666677775443

>PLN02470 acetolactate synthase

Probab=99.38  E-value=6.6e-12  Score=121.00  Aligned_cols=93  Identities=31%  Similarity=0.361  Sum_probs=86.5

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      .+++|+.+++.|++.+++|.|++.| |++..|.+++ +..+.|.+++++..+++|||++|.++++++..    |+.+||+
T Consensus       375 ~~l~~~~~~~~l~~~~~~d~iv~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv~  449 (585)
T PLN02470        375 DAIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQW-YKYKEPRRWLTSGGLGAMGFGLPAAIGAAAAN----PDAIVVD  449 (585)
T ss_pred             CCcCHHHHHHHHHhhCCCCEEEEECCcHHHHHHHHh-cccCCCCeEEcCCccccccchHHHHHHHHHhC----CCCcEEE
Confidence            5899999999999999999999999 7778888887 88889999999999999999999999999986    8889999


Q ss_pred             EEcCCCccccchhhhHHhh
Q psy12573         86 VQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+|||++++++++|.++.+
T Consensus       450 i~GDG~f~m~~~eL~Ta~~  468 (585)
T PLN02470        450 IDGDGSFIMNIQELATIHV  468 (585)
T ss_pred             EEccchhhccHHHHHHHHH
Confidence            9999999999999999876

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=99.37  E-value=3.8e-12  Score=122.07  Aligned_cols=94  Identities=26%  Similarity=0.381  Sum_probs=86.3

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++|.++++.|++.+++|.+++.| |++..|..+. +..+.+..++++..+++|||++|.++++++..    |+.+||
T Consensus       366 ~~~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~----p~~~Vv  440 (566)
T PRK07282        366 ERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQY-YPYQNERQLVTSGGLGTMGFGIPAAIGAKIAN----PDKEVI  440 (566)
T ss_pred             CCCcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHh-cccCCCCcEecCCccccccchhhHhheeheec----CCCcEE
Confidence            45799999999999999999999999 7777888887 88889999999999999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++++++++|.++.+
T Consensus       441 ~i~GDG~f~m~~~eL~Ta~~  460 (566)
T PRK07282        441 LFVGDGGFQMTNQELAILNI  460 (566)
T ss_pred             EEEcchhhhccHHHHHHHHH
Confidence            99999999999999999876

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.37  E-value=7.1e-12  Score=120.75  Aligned_cols=94  Identities=24%  Similarity=0.394  Sum_probs=86.8

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+|+|+++++.|++.+|+|.|++.| |++..|..++ +..++|..++++..+++|||++|.+++++++.    |+.+||
T Consensus       385 ~~~i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~Vv  459 (587)
T PRK06965        385 SEIIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQF-YRFNEPRRWINSGGLGTMGVGLPYAMGIKMAH----PDDDVV  459 (587)
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHh-cccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEE
Confidence            45799999999999999999999999 7777888887 88999999999999999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++++++++|.++.+
T Consensus       460 ~i~GDGsf~m~~~eL~Ta~r  479 (587)
T PRK06965        460 CITGEGSIQMCIQELSTCLQ  479 (587)
T ss_pred             EEEcchhhhcCHHHHHHHHH
Confidence            99999999999999999876

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=99.36  E-value=8.8e-12  Score=119.82  Aligned_cols=94  Identities=29%  Similarity=0.397  Sum_probs=86.7

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.|++|+.+++.|++.+++|.|++.| |++..|..++ +..+.++.++++..+++|||++|.++++++..    |+.+||
T Consensus       356 ~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~-~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~----p~r~Vv  430 (575)
T TIGR02720       356 EGPLQAYQVYRAINKIAEDDAIYSIDVGDININSNRH-LKMTPKNKWITSNLFATMGVGVPGAIAAKLNY----PDRQVF  430 (575)
T ss_pred             CCCcCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHh-CCcCCCCeEEcCCCcchhhchHHHHHHHHHhC----CCCcEE
Confidence            46899999999999999999999999 8888888887 88889999999988999999999999999975    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||+++|++++|.++.+
T Consensus       431 ~i~GDGsf~m~~~eL~Tavr  450 (575)
T TIGR02720       431 NLAGDGAFSMTMQDLLTQVQ  450 (575)
T ss_pred             EEEcccHHHhhHHHHHHHHH
Confidence            99999999999999999875

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=99.36  E-value=7.9e-12  Score=119.62  Aligned_cols=94  Identities=22%  Similarity=0.296  Sum_probs=85.2

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCC-CCeE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP-GKRV   83 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~-~~~v   83 (315)
                      +.|++|+++++.|++.+|++.+++.| |++..|..++ +..+.+.+++++..+++|||++|.++++++..    + +.+|
T Consensus       344 ~~~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~~V  418 (549)
T PRK06457        344 DKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARH-FRASGEQTFIFSAWLGSMGIGVPGSVGASFAV----ENKRQV  418 (549)
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-CCCCCCCeEEeCCCcchhhhhHHHHHHHHhcC----CCCCeE
Confidence            46899999999999999999999999 8888888877 77788889999888999999999999999985    6 7899


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+|+|||++++++++|.+..+
T Consensus       419 v~i~GDGsf~~~~~eL~Ta~~  439 (549)
T PRK06457        419 ISFVGDGGFTMTMMELITAKK  439 (549)
T ss_pred             EEEEcccHHhhhHHHHHHHHH
Confidence            999999999999999988765

>PRK06154 hypothetical protein; Provisional

Probab=99.36  E-value=1.6e-11  Score=117.71  Aligned_cols=95  Identities=31%  Similarity=0.521  Sum_probs=85.7

Q ss_pred             CCCCCCHHHHHHHHHhhCC-CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          5 ESVPLNYYAAIHAVQVSIP-DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      .+.||+|+.+++.|++.++ +|.|++.| |.+..|..++ +..+.|+.++++..+++|||++|.++++++..    |+.+
T Consensus       377 ~~~~l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~----p~r~  451 (565)
T PRK06154        377 DSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPF-YVASRPGSYLGWGKTTQLGYGLGLAMGAKLAR----PDAL  451 (565)
T ss_pred             CCCCcCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHh-CCCCCCCeEEccCCCcccccHHHHHHHHHHhC----CCCc
Confidence            3458999999999999997 48888889 8888888887 88888999999988999999999999999985    8899


Q ss_pred             EEEEEcCCCccccchhhhHHhh
Q psy12573         83 VVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        83 vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      ||+++|||++.+++++|.++.+
T Consensus       452 Vv~i~GDG~f~m~~~EL~Ta~r  473 (565)
T PRK06154        452 VINLWGDAAFGMTGMDFETAVR  473 (565)
T ss_pred             EEEEEcchHHhccHHHHHHHHH
Confidence            9999999999999999999876

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=99.35  E-value=2.2e-11  Score=99.41  Aligned_cols=90  Identities=30%  Similarity=0.382  Sum_probs=79.6

Q ss_pred             CCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy12573          9 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ   87 (315)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~   87 (315)
                      ++|+++++.|++.+|+|.+++.| |++..|..++ +..+.|...+++.. ++||+++|.+++.+++.    ++.++|+++
T Consensus         1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~-~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~----~~~~vv~i~   74 (178)
T cd02002           1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQ-LPLTRPGSYFTLRG-GGLGWGLPAAVGAALAN----PDRKVVAII   74 (178)
T ss_pred             CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHh-cccCCCCCeeccCC-ccccchHHHHHHHHhcC----CCCeEEEEE
Confidence            57889999999999999999999 7888888877 77777888898888 99999999999999975    788999999


Q ss_pred             cCCCccccchhhhHHhh
Q psy12573         88 GDSAFGFSGMELETLAV  104 (315)
Q Consensus        88 g~g~~~~aG~Dl~~~~~  104 (315)
                      |||.+.+...++.++.+
T Consensus        75 GDG~f~~~~~el~ta~~   91 (178)
T cd02002          75 GDGSFMYTIQALWTAAR   91 (178)
T ss_pred             cCchhhccHHHHHHHHH
Confidence            99999888888887765

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=99.35  E-value=2.6e-12  Score=123.58  Aligned_cols=164  Identities=23%  Similarity=0.317  Sum_probs=115.7

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.++++.++++.|++.+++|.+++.| |++..|..++ +..+.|..++++..+++|||++|.+|+.++..    ++.++|
T Consensus       369 ~~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~----p~~~vv  443 (572)
T PRK06456        369 NGKLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVF-WEVLEPRTFLTSSGMGTMGFGLPAAMGAKLAR----PDKVVV  443 (572)
T ss_pred             CCCcCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHh-cCcCCCCcEEcCCCcccccchhHHHHHHHHhC----CCCeEE
Confidence            34799999999999999999999999 8778888887 77888889999988999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhh
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA  157 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~  157 (315)
                      +|+|||++++++++|.+..+...+       +.. ...+...++    .. ...+.          .+..|....|+..+
T Consensus       444 ~i~GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN~~-yg~i~~~q~----~~-~~~~~----------~~~~~~~~~d~~~~  507 (572)
T PRK06456        444 DLDGDGSFLMTGTNLATAVDEHIPVISVIFDNRT-LGLVRQVQD----LF-FGKRI----------VGVDYGPSPDFVKL  507 (572)
T ss_pred             EEEccchHhcchHHHHHHHHhCCCeEEEEEECCc-hHHHHHHHH----Hh-hCCCc----------ccccCCCCCCHHHH
Confidence            999999999999999998762211       000 000110100    00 01110          01223234788888


Q ss_pred             hhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        158 TTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       158 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                      ++.  |+....+ ....++...+......++|.+..
T Consensus       508 A~a--~G~~~~~v~~~~eL~~al~~a~~~~~p~lIe  541 (572)
T PRK06456        508 AEA--FGALGFNVTTYEDIEKSLKSAIKEDIPAVIR  541 (572)
T ss_pred             HHH--CCCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence            777  5655555 55666666666666667776543

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=99.35  E-value=1.4e-11  Score=118.64  Aligned_cols=169  Identities=22%  Similarity=0.246  Sum_probs=115.0

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.|++|+.+++.+++.+++|.+++.| |.+..|..++ +..+.+..++++..+++|||++|.++++++..    ++.+||
T Consensus       356 ~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~----p~r~vv  430 (574)
T PRK09124        356 GKPIHPQYLARQISEFAADDAIFTCDVGTPTVWAARY-LKMNGKRRLLGSFNHGSMANAMPQALGAQAAH----PGRQVV  430 (574)
T ss_pred             CCcCCHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHh-cccCCCCeEEecCCcccccchHHHHHHHHHhC----CCCeEE
Confidence            46899999999999999999999999 8888888887 88888899999889999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCC
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS  164 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~  164 (315)
                      +|+|||++.++.++|.+..+...  +-.   +..+||.-+.+.+..+.    ..+. ...+..+ ...|+..+++.  |+
T Consensus       431 ~i~GDGsf~m~~~eL~Ta~~~~l--pv~---ivV~NN~~~g~i~~~~~----~~~~-~~~~~~~-~~~d~~~lA~a--~G  497 (574)
T PRK09124        431 ALSGDGGFSMLMGDFLSLVQLKL--PVK---IVVFNNSVLGFVAMEMK----AGGY-LTDGTDL-HNPDFAAIAEA--CG  497 (574)
T ss_pred             EEecCcHHhccHHHHHHHHHhCC--CeE---EEEEeCCccccHHHHHH----hcCC-ccccCcC-CCCCHHHHHHH--CC
Confidence            99999999999999999875221  100   00000000000000000    0000 0001112 23577777776  56


Q ss_pred             Ccchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        165 TPGYN-ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       165 ~~~~~-~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                      .+..+ ....++...+......++|++..
T Consensus       498 ~~~~~v~~~~eL~~al~~a~~~~~p~lIe  526 (574)
T PRK09124        498 ITGIRVEKASELDGALQRAFAHDGPALVD  526 (574)
T ss_pred             CeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence            66555 55666666666665667776543

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=99.34  E-value=1.6e-11  Score=118.47  Aligned_cols=94  Identities=27%  Similarity=0.405  Sum_probs=86.3

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++|.+++..|++.+|+|.|++.| |++..|..++ +..+.|++++++..+++|||++|.+++.++..    |+.+||
T Consensus       383 ~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~----p~r~vv  457 (588)
T PRK07525        383 PDYMHPRQALREIQKALPEDAIVSTDIGNNCSIANSY-LRFEKGRKYLAPGSFGNCGYAFPAIIGAKIAC----PDRPVV  457 (588)
T ss_pred             CCCcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHh-cccCCCCeEEccccccccccHHHHHHHHHHhC----CCCcEE
Confidence            35899999999999999999999999 8878888887 88889999999999999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++++++++|.+..+
T Consensus       458 ~i~GDG~f~~~~~el~Ta~~  477 (588)
T PRK07525        458 GFAGDGAWGISMNEVMTAVR  477 (588)
T ss_pred             EEEcCchHhccHHHHHHHHH
Confidence            99999999999999998865

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=99.34  E-value=1.9e-11  Score=116.80  Aligned_cols=166  Identities=23%  Similarity=0.314  Sum_probs=117.9

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++|.++++.|++.++++.+++.| |++..|..+. +....+..++.+..+++|||++|.++++++..    ++.+||
T Consensus       356 ~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----~~~~vv  430 (539)
T TIGR02418       356 QAHLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARY-FRSYRARHLLISNGMQTLGVALPWAIGAALVR----PNTKVV  430 (539)
T ss_pred             CCCcCHHHHHHHHHhhCCCCCEEEECCcHHHHHHHHh-cccCCCCceecCCCccccccHHHHHHHHHHhC----CCCcEE
Confidence            45899999999999999999999999 8888888887 77888889988888999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhhhccCchhH----H-HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhh
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEGRPKL----D-EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT  159 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~  159 (315)
                      +|+|||++.+++++|.+..+...+  -.    + ..+..+. ...... ...  .         .+..| ...|+..+++
T Consensus       431 ~i~GDGsf~m~~~eL~Ta~~~~lp--i~ivV~NN~~y~~~~-~~~~~~-~~~--~---------~~~~~-~~~d~~~lA~  494 (539)
T TIGR02418       431 SVSGDGGFLFSSMELETAVRLKLN--IVHIIWNDNGYNMVE-FQEEMK-YQR--S---------SGVDF-GPIDFVKYAE  494 (539)
T ss_pred             EEEcchhhhchHHHHHHHHHhCCC--eEEEEEECCcchHHH-HHHHHh-cCC--c---------ccccC-CCCCHHHHHH
Confidence            999999999999999998752211  00    0 0000000 000000 000  0         01122 2478888877


Q ss_pred             hcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        160 ASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      .  |+.+..+ ....++...+......++|++..|.
T Consensus       495 a--~G~~~~~V~~~~eL~~al~~a~~~~~p~lIev~  528 (539)
T TIGR02418       495 S--FGAKGLRVESPDQLEPTLRQAMEVEGPVVVDIP  528 (539)
T ss_pred             H--CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence            7  5666555 5566677777666677888876543

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.34  E-value=1.6e-11  Score=117.86  Aligned_cols=94  Identities=32%  Similarity=0.357  Sum_probs=85.6

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ..||+|.++++.|++.+++|.|++.| |++..|..++ ++.+.|+.++++..+++|||++|.++++++..    |+.+||
T Consensus       362 ~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~----p~~~vv  436 (563)
T PRK08527        362 DEVLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQF-YPFNYPRQLATSGGLGTMGYGLPAALGAKLAV----PDKVVI  436 (563)
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-cccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEE
Confidence            35899999999999999999999999 7778888887 88888899999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++++++++|.+..+
T Consensus       437 ~i~GDG~f~m~~~eL~Ta~~  456 (563)
T PRK08527        437 NFTGDGSILMNIQELMTAVE  456 (563)
T ss_pred             EEecCchhcccHHHHHHHHH
Confidence            99999999999999988875

>PRK07586 hypothetical protein; Validated

Probab=99.34  E-value=1.6e-11  Score=116.66  Aligned_cols=171  Identities=20%  Similarity=0.237  Sum_probs=115.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.|++|.++++.|++.+|+|.+++.| |++..|..++ +....+..++++.. ++|||++|.+++++++.    |+.+||
T Consensus       334 ~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~----p~r~Vv  407 (514)
T PRK07586        334 TGALTPEAIAQVIAALLPENAIVVDESITSGRGFFPA-TAGAAPHDWLTLTG-GAIGQGLPLATGAAVAC----PDRKVL  407 (514)
T ss_pred             CCCcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHh-ccccCCCCEEccCC-cccccHHHHHHHHHHhC----CCCeEE
Confidence            56899999999999999999999999 7778888776 77778888888766 99999999999999985    889999


Q ss_pred             EEEcCCCccccchhhhHHhhhccCchhH----H-HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhc-cccChhhhh
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEGRPKL----D-EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV-ATCDLAIAT  158 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~-~g~D~~~~~  158 (315)
                      +++|||++.+++++|.+..+...  |-.    + ..+..++... .......+.-.   +   .....+. ...|+..++
T Consensus       408 ~i~GDGsf~m~~~EL~Ta~~~~l--pv~ivV~NN~~y~~~~~~~-~~~~~~~~~~~---~---~~~~~~~~~~~d~~~lA  478 (514)
T PRK07586        408 ALQGDGSAMYTIQALWTQARENL--DVTTVIFANRAYAILRGEL-ARVGAGNPGPR---A---LDMLDLDDPDLDWVALA  478 (514)
T ss_pred             EEEechHHHhHHHHHHHHHHcCC--CCEEEEEeCchhHHHHHHH-HHhcCCCCCcc---c---cccccCCCCCCCHHHHH
Confidence            99999999999999999876221  110    0 0011111100 00100000000   0   0001111 136888777


Q ss_pred             hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        159 TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      +.  |+.+..+ ....++...+......++|.+..|
T Consensus       479 ~a--~G~~~~~V~~~~el~~al~~a~~~~~p~liev  512 (514)
T PRK07586        479 EG--MGVPARRVTTAEEFADALAAALAEPGPHLIEA  512 (514)
T ss_pred             HH--CCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEE
Confidence            77  5655555 555566666666666788887655

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.33  E-value=1.7e-11  Score=117.58  Aligned_cols=94  Identities=30%  Similarity=0.406  Sum_probs=85.2

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++|.++++.|++.+++|.|++.| |++..|..++ +..+.|..++++..+++|||++|.+++++++.    ++.+||
T Consensus       370 ~~~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~----p~~~vv  444 (570)
T PRK06725        370 ESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHF-YKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAK----EEELVI  444 (570)
T ss_pred             CCCcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHh-ccccCCCeEEccCCcccccchhhHHHhhHhhc----CCCeEE
Confidence            45899999999999999999999999 6667777777 88889999999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++.+++++|.++.+
T Consensus       445 ~i~GDG~f~~~~~el~Ta~~  464 (570)
T PRK06725        445 CIAGDASFQMNIQELQTIAE  464 (570)
T ss_pred             EEEecchhhccHHHHHHHHH
Confidence            99999999999999999865

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=99.33  E-value=1.6e-11  Score=117.52  Aligned_cols=165  Identities=19%  Similarity=0.320  Sum_probs=116.7

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.++++.++++.|++.+++|.+++.| |++..|..++ +..+.++.++++..+++|||++|.++++++..    ++.+||
T Consensus       349 ~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~----p~~~vv  423 (548)
T PRK08978        349 GEAIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQH-MRFTRPENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVI  423 (548)
T ss_pred             CCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHh-cccCCCCeEEeCCchhhhhchHHHHHHHHHhC----CCCcEE
Confidence            35799999999999999999999999 7778888877 88888999999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhh
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA  157 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~  157 (315)
                      +|+|||+|++++++|.++.+...+       +.. ...+....+    .. .....          .+..+....|+..+
T Consensus       424 ~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~-~~~~~~~~~----~~-~~~~~----------~~~~~~~~~d~~~l  487 (548)
T PRK08978        424 CVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQR-LGMVRQWQQ----LF-FDERY----------SETDLSDNPDFVML  487 (548)
T ss_pred             EEEccchhhccHHHHHHHHHhCCCeEEEEEeCCc-cHHHHHHHH----HH-hCCcc----------eecCCCCCCCHHHH
Confidence            999999999999999988763211       110 011111110    00 00000          01122234688888


Q ss_pred             hhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        158 TTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       158 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      ++.  |+....+ ....++...+.......+|.+..|
T Consensus       488 a~a--~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV  522 (548)
T PRK08978        488 ASA--FGIPGQTITRKDQVEAALDTLLNSEGPYLLHV  522 (548)
T ss_pred             HHH--CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence            777  5655555 555666666666666777775443

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=99.33  E-value=1.3e-11  Score=117.81  Aligned_cols=157  Identities=19%  Similarity=0.234  Sum_probs=112.9

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      .|+++.++++.|++.+++|.+++.| |++. |..+. +..+.+++++.+..+++|||++|.++++++..    |+.+||+
T Consensus       354 ~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~-~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~  427 (539)
T TIGR03393       354 SALSQENFWQTLQTFLRPGDIILADQGTSA-FGAAD-LRLPADVNFIVQPLWGSIGYTLPAAFGAQTAC----PNRRVIL  427 (539)
T ss_pred             CccCHHHHHHHHHHhcCCCCEEEEccCchh-hhhhh-ccCCCCCeEEechhhhhhhhHHHHHHHHHhcC----CCCCeEE
Confidence            4799999999999999999999999 7665 66665 88888889999889999999999999999975    8899999


Q ss_pred             EEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec-------ccchh--ccccChhh
Q psy12573         86 VQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA-------AGCQL--VATCDLAI  156 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g-------~G~~f--~~g~D~~~  156 (315)
                      |+|||++.|++++|.++.+..  .                    | .++.++|--.+|       .+..+  ....|+..
T Consensus       428 i~GDG~f~m~~~EL~Ta~~~~--l--------------------p-i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~  484 (539)
T TIGR03393       428 LIGDGSAQLTIQELGSMLRDK--Q--------------------H-PIILVLNNEGYTVERAIHGAEQRYNDIALWNWTH  484 (539)
T ss_pred             EEcCcHHHhHHHHHHHHHHcC--C--------------------C-CEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHH
Confidence            999999999999999987621  1                    1 122222221111       11111  11257776


Q ss_pred             hhhhcCCCCc----chh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        157 ATTASKFSTP----GYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       157 ~~~~~~~~~~----~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      +++.  |+.+    ..+ ....++...+......++|++..|.
T Consensus       485 la~a--~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~liev~  525 (539)
T TIGR03393       485 LPQA--LSLDPQSECWRVSEAEQLADVLEKVAAHERLSLIEVV  525 (539)
T ss_pred             HHHH--cCCCCccceEEeccHHHHHHHHHHHhccCCeEEEEEE
Confidence            6665  4442    334 5556666677777777888765543

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>PRK05858 hypothetical protein; Provisional

Probab=99.33  E-value=1.7e-11  Score=117.17  Aligned_cols=166  Identities=26%  Similarity=0.383  Sum_probs=117.8

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.|++|.++++.|++.+|+|.+++.| |++..|..++ +...+|++++++..+++|||++|.+++++|..    |+.++|
T Consensus       355 ~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~----p~r~vv  429 (542)
T PRK05858        355 RDPIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRY-IDPYRPGCWLDPGPFGCLGTGPGYALAARLAR----PSRQVV  429 (542)
T ss_pred             CCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHH-ccccCCCCEEeCCCccccccchhHHHHHHHhC----CCCcEE
Confidence            46899999999999999999999999 7777788777 78888899999988899999999999999985    889999


Q ss_pred             EEEcCCCccccchhhhHHhhhccCchhHHH-----HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhh
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEGRPKLDE-----IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT  159 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~  159 (315)
                      +++|||++.++.+||.++.+...  |-...     .+...........  ..+.           +..+-...|+..+++
T Consensus       430 ~i~GDG~f~~~~~eL~Ta~~~~l--pi~ivV~NN~~y~~~~~~~~~~~--~~~~-----------~~~~~~~~d~~~lA~  494 (542)
T PRK05858        430 LLQGDGAFGFSLMDVDTLVRHNL--PVVSVIGNNGIWGLEKHPMEALY--GYDV-----------AADLRPGTRYDEVVR  494 (542)
T ss_pred             EEEcCchhcCcHHHHHHHHHcCC--CEEEEEEeCCchhhHHHHHHHhc--CCcc-----------ccccCCCCCHHHHHH
Confidence            99999999999999999876221  11000     0000010000000  1000           011223478887777


Q ss_pred             hcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        160 ASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      .  |+....+ ....++...+......++|++..+
T Consensus       495 a--~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev  527 (542)
T PRK05858        495 A--LGGHGELVTVPAELGPALERAFASGVPYLVNV  527 (542)
T ss_pred             H--CCCeEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence            6  6666555 566667677766666778876544

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=99.32  E-value=1.9e-11  Score=117.47  Aligned_cols=169  Identities=19%  Similarity=0.206  Sum_probs=116.6

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ..+++|+++++.|++.+++|.+++.| |++..|..++ +..+++..++++..+++|||++|.++++++..    ++.+||
T Consensus       372 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaAiGaala~----p~~~vv  446 (571)
T PRK07710        372 SESIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQY-YPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAK----PDETVV  446 (571)
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-cccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEE
Confidence            45899999999999999999999999 7777888887 88888899999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhhhccCchh--H-HHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhc
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEGRPK--L-DEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS  161 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~  161 (315)
                      +|+|||+++++.++|.++.+...+.--  . ++.+..++......  .....          .+..+....|+..+++. 
T Consensus       447 ~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~--~~~~~----------~~~~~~~~~d~~~~A~a-  513 (571)
T PRK07710        447 AIVGDGGFQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEF--YNQRY----------SHSLLSCQPDFVKLAEA-  513 (571)
T ss_pred             EEEcchHHhhhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHH--hCCcc----------eeccCCCCCCHHHHHHH-
Confidence            999999999999999988752211000  0 00000011000000  00100          01123334688877776 


Q ss_pred             CCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        162 KFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       162 ~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                       |+....+ ....++...+......++|++..|
T Consensus       514 -~G~~~~~v~~~~el~~al~~a~~~~~p~lieV  545 (571)
T PRK07710        514 -YGIKGVRIDDELEAKEQLQHAIELQEPVVIDC  545 (571)
T ss_pred             -CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence             5655555 555666666666667778876544

>PRK08611 pyruvate oxidase; Provisional

Probab=99.32  E-value=2e-11  Score=117.38  Aligned_cols=164  Identities=20%  Similarity=0.216  Sum_probs=115.7

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      .+.+++|..+++.|++.+|++.+++.| |++..|..+. +..+.+..++.+..+++||+++|.+++.++..    |+.+|
T Consensus       355 ~~~~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~V  429 (576)
T PRK08611        355 ASTPIKPERVMAAIQKIADDDAVLSVDVGTVTVWSARY-LNLGTNQKFIISSWLGTMGCGLPGAIAAKIAF----PDRQA  429 (576)
T ss_pred             CCCCcCHHHHHHHHhhhcCCCeEEEEcChHHHHHHHhc-CCcCCCCeEEeCCCchhhhhhHHHHHHHHHhC----CCCcE
Confidence            346899999999999999999999999 7778888887 88888889998888999999999999999975    78899


Q ss_pred             EEEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI  156 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~  156 (315)
                      |+|+|||++++++++|.+..+..-+       +..+ ..+....    ....  .+.          .+..+ ...|+..
T Consensus       430 v~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~-g~i~~~q----~~~~--~~~----------~~~~~-~~~d~~~  491 (576)
T PRK08611        430 IAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQL-AFIKYEQ----QAAG--ELE----------YAIDL-SDMDYAK  491 (576)
T ss_pred             EEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeCCcc-hHHHHHH----HHhc--CCc----------ccccC-CCCCHHH
Confidence            9999999999999999987652211       0000 0000000    0000  000          01111 2368887


Q ss_pred             hhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        157 ATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       157 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      +++.  |+....+ ....++...+......++|++..|
T Consensus       492 lA~a--~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV  527 (576)
T PRK08611        492 FAEA--CGGKGYRVEKAEELDPAFEEALAQDKPVIIDV  527 (576)
T ss_pred             HHHH--CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            7776  5665555 556666666666666777775444

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=99.32  E-value=2.1e-11  Score=99.13  Aligned_cols=88  Identities=18%  Similarity=0.065  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhcc-CCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy12573         11 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLN-NLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG   88 (315)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~-~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g   88 (315)
                      ...+++.|++.+|+|.+++.| |.+..|..++ ++. ++|+.++++..+++||+++|.+++.++..     +.+||+|+|
T Consensus         3 ~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-----~~~Vv~i~G   76 (175)
T cd02009           3 EPALARALPDHLPEGSQLFVGNSMPIRDLDLF-ALPSDKTVRVFANRGASGIDGTLSTALGIALAT-----DKPTVLLTG   76 (175)
T ss_pred             hHHHHHHHHHhCCCCCeEEEECCHHHHHHHHc-cCccCCCceEEecCCccchhhHHHHHHHHHhcC-----CCCEEEEEe
Confidence            456899999999999999999 8888888877 776 88889998888899999999999999974     568999999


Q ss_pred             CCCccccchhhhHHhh
Q psy12573         89 DSAFGFSGMELETLAV  104 (315)
Q Consensus        89 ~g~~~~aG~Dl~~~~~  104 (315)
                      ||+++++.++|.+..+
T Consensus        77 DGsf~m~~~eL~ta~~   92 (175)
T cd02009          77 DLSFLHDLNGLLLGKQ   92 (175)
T ss_pred             hHHHHHhHHHHHhccc
Confidence            9999999999988764

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.31  E-value=2.8e-11  Score=117.29  Aligned_cols=165  Identities=22%  Similarity=0.254  Sum_probs=113.7

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+|+|+++++.|++.++ |.+++.| |++..|..++ +. ..|..++++..+++||+++|.++++++..    |+.+||
T Consensus       384 ~~~l~~~~v~~~l~~~~~-d~i~~~D~G~~~~~~~~~-~~-~~p~~~~~s~~~g~mG~glpaAiGA~lA~----p~r~Vv  456 (616)
T PRK07418        384 EGEIYPQEVLLAVRDLAP-DAYYTTDVGQHQMWAAQF-LR-NGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVI  456 (616)
T ss_pred             CCCcCHHHHHHHHHhhCC-CcEEEECChHHHHHHHHh-hh-cCCCeEEcCCCccccccHHHHHHHHHHhC----CCCcEE
Confidence            468999999999999987 6888889 8888999887 65 45777999989999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhhhccCchhHHHH-----HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhc-cccChhhhh
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEGRPKLDEI-----FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV-ATCDLAIAT  158 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~-~g~D~~~~~  158 (315)
                      +|+|||++.|+++||.+..+...  |-....     +..+... .... ......          +..+. ...|+..++
T Consensus       457 ~i~GDG~f~m~~~eL~Ta~r~~l--pvi~vV~NN~~~g~i~~~-q~~~-~~~~~~----------~~~~~~~~~d~~~~A  522 (616)
T PRK07418        457 CIAGDASFLMNIQELGTLAQYGI--NVKTVIINNGWQGMVRQW-QESF-YGERYS----------ASNMEPGMPDFVKLA  522 (616)
T ss_pred             EEEcchHhhhhHHHHHHHHHhCC--CeEEEEEECCcchHHHHH-HHHh-cCCCce----------eecCCCCCCCHHHHH
Confidence            99999999999999999876221  110000     0000100 0000 111100          11121 236888777


Q ss_pred             hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        159 TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      +.  |+....+ ....++...+......++|++..|
T Consensus       523 ~a--~G~~g~~V~~~~el~~al~~a~~~~~p~lIeV  556 (616)
T PRK07418        523 EA--FGVKGMVISERDQLKDAIAEALAHDGPVLIDV  556 (616)
T ss_pred             HH--CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            77  5666655 556666667766666777876544

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=99.31  E-value=3.8e-11  Score=115.34  Aligned_cols=94  Identities=37%  Similarity=0.568  Sum_probs=85.2

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.|+++.++++.|++.+|+|.+++.| |++..|..+. +..+.+.+++++..+++||+++|.+++.++..    ++.+||
T Consensus       367 ~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----~~~~vv  441 (564)
T PRK08155        367 DDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQA-YPLNRPRQWLTSGGLGTMGFGLPAAIGAALAN----PERKVL  441 (564)
T ss_pred             CCCcCHHHHHHHHHHhCCCCeEEEECCchHHHHHHHh-ccccCCCeEEeCCCcccccchhHHHHHHHHhC----CCCcEE
Confidence            45899999999999999999999999 7778888777 88888999999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||++++++++|.+..+
T Consensus       442 ~i~GDGsf~~~~~eL~ta~~  461 (564)
T PRK08155        442 CFSGDGSLMMNIQEMATAAE  461 (564)
T ss_pred             EEEccchhhccHHHHHHHHH
Confidence            99999999999999988764

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=99.30  E-value=2.3e-11  Score=117.80  Aligned_cols=94  Identities=28%  Similarity=0.355  Sum_probs=86.0

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.++++.++++.|++.+++|.+++.| |++..|..++ ++.+.+..++++..+++|||++|.++++++..    |+.+||
T Consensus       395 ~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~----p~~~Vv  469 (612)
T PRK07789        395 DGSLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQF-IDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGR----PDKEVW  469 (612)
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHh-cccCCCCeEEcCCCcccccchhhhHHhhhccC----CCCcEE
Confidence            45799999999999999999999999 7777888887 88888889999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++++++++|.++.+
T Consensus       470 ~i~GDG~f~m~~~eL~Ta~~  489 (612)
T PRK07789        470 AIDGDGCFQMTNQELATCAI  489 (612)
T ss_pred             EEEcchhhhccHHHHHHHHH
Confidence            99999999999999999876

>PLN02573 pyruvate decarboxylase

Probab=99.30  E-value=2.7e-11  Score=116.39  Aligned_cols=93  Identities=20%  Similarity=0.276  Sum_probs=81.8

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.|++|+++++.|++.+++|.|++.| |++ ++..+. +..|.+..++.+..+++|||++|.+|++++..    ++.+||
T Consensus       377 ~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~-~~~~~~-~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~vv  450 (578)
T PLN02573        377 GEPLRVNVLFKHIQKMLSGDTAVIAETGDS-WFNCQK-LKLPEGCGYEFQMQYGSIGWSVGATLGYAQAA----PDKRVI  450 (578)
T ss_pred             CCccCHHHHHHHHHHhcCCCCEEEEecccc-hhhHHh-ccCCCCCeEEeecchhhhhhhhhHHHHHHHhC----CCCceE
Confidence            45799999999999999999999999 554 443344 77888888888888999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++.|++++|.++.+
T Consensus       451 ~i~GDG~f~m~~~EL~Ta~r  470 (578)
T PLN02573        451 ACIGDGSFQVTAQDVSTMIR  470 (578)
T ss_pred             EEEeccHHHhHHHHHHHHHH
Confidence            99999999999999999876

>PRK08617 acetolactate synthase; Reviewed

Probab=99.30  E-value=2.5e-11  Score=116.36  Aligned_cols=166  Identities=27%  Similarity=0.354  Sum_probs=116.3

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      .+.++++.++++.|++.+++|.+++.| |++..|..++ +...+|++++.+..+++|||++|.++++++..    ++.+|
T Consensus       361 ~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~v  435 (552)
T PRK08617        361 EEGAVHPLRIIRALQDIVTDDTTVTVDVGSHYIWMARY-FRSYEPRHLLFSNGMQTLGVALPWAIAAALVR----PGKKV  435 (552)
T ss_pred             CCCCcCHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHh-ccccCCCeEEecCccccccccccHHHhhHhhc----CCCcE
Confidence            346799999999999999999999999 8888888887 77788888888888899999999999999985    78899


Q ss_pred             EEEEcCCCccccchhhhHHhhhccCchhH-----HHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAVDKEGRPKL-----DEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT  158 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~  158 (315)
                      |+|+|||++.|++++|.+..+...+  -.     +..+..++.. ... ... +.          .+..+ ...|+..++
T Consensus       436 v~i~GDGsf~m~~~eL~Ta~~~~lp--v~~vV~NN~~~~~~~~~-~~~-~~~-~~----------~~~~~-~~~d~~~lA  499 (552)
T PRK08617        436 VSVSGDGGFLFSAMELETAVRLKLN--IVHIIWNDGHYNMVEFQ-EEM-KYG-RS----------SGVDF-GPVDFVKYA  499 (552)
T ss_pred             EEEEechHHhhhHHHHHHHHHhCCC--eEEEEEECCccchHHHH-HHh-hcC-Cc----------ccCCC-CCCCHHHHH
Confidence            9999999999999999987652211  00     0000000000 000 000 00          01112 236777777


Q ss_pred             hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        159 TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      +.  |+.+..+ ....++...+......++|++..|
T Consensus       500 ~a--~G~~~~~v~~~~eL~~al~~a~~~~~p~liev  533 (552)
T PRK08617        500 ES--FGAKGLRVTSPDELEPVLREALATDGPVVIDI  533 (552)
T ss_pred             HH--CCCeEEEECCHHHHHHHHHHHHhCCCcEEEEE
Confidence            76  5666655 556667777766667778876554

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.29  E-value=3.8e-11  Score=115.25  Aligned_cols=167  Identities=19%  Similarity=0.248  Sum_probs=115.6

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ..+++|..+++.|++.+| |.+++.| |++..|..++ +..+.+..++++..+++|||++|.+++.++..    ++.+||
T Consensus       363 ~~~l~~~~~~~~l~~~~p-~~iiv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv  436 (561)
T PRK06048        363 EDVIKPQYVIEQIYELCP-DAIIVTEVGQHQMWAAQY-FKYKYPRTFITSGGLGTMGYGFPAAIGAKVGK----PDKTVI  436 (561)
T ss_pred             CCCcCHHHHHHHHHhhCC-CcEEEEcCcHHHHHHHHh-cccCCCCeEEeCCCccccccHHHHHHHHHHhC----CCCcEE
Confidence            468999999999999987 7888899 7777888777 88888899999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhhhccCchhHH-----HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhh
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEGRPKLD-----EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT  159 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~  159 (315)
                      +++|||+++++++||.++.+...+  -.-     ..+..+.... ... ...+.          .+..+....|+..+++
T Consensus       437 ~i~GDG~f~m~~~eL~Ta~~~~l~--i~~vV~NN~~y~~i~~~~-~~~-~~~~~----------~~~~~~~~~d~~~lA~  502 (561)
T PRK06048        437 DIAGDGSFQMNSQELATAVQNDIP--VIVAILNNGYLGMVRQWQ-ELF-YDKRY----------SHTCIKGSVDFVKLAE  502 (561)
T ss_pred             EEEeCchhhccHHHHHHHHHcCCC--eEEEEEECCccHHHHHHH-HHH-cCCcc----------cccCCCCCCCHHHHHH
Confidence            999999999999999998763211  000     0000011000 000 00100          0112223468887777


Q ss_pred             hcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        160 ASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      .  |+.+..+ ....++...+......++|.+..|.
T Consensus       503 a--~G~~~~~v~t~~el~~al~~a~~~~~p~liev~  536 (561)
T PRK06048        503 A--YGALGLRVEKPSEVRPAIEEAVASDRPVVIDFI  536 (561)
T ss_pred             H--CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence            7  5655555 5556666666666677788765443

>PRK06163 hypothetical protein; Provisional

Probab=99.29  E-value=7.5e-11  Score=97.51  Aligned_cols=87  Identities=23%  Similarity=0.376  Sum_probs=72.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CC--hhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GA--NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~--~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      .-+++++++++.+++.+++|++++.| |+  +..|..+     ..+.+++   .+++||+++|.+++.+++.    |+.+
T Consensus        10 ~~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~-----~~~~~~~---~~GsMG~glpaAiGaalA~----p~r~   77 (202)
T PRK06163         10 AKVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG-----QRPQNFY---MLGSMGLAFPIALGVALAQ----PKRR   77 (202)
T ss_pred             CCCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh-----cCCCCeE---eecccccHHHHHHHHHHhC----CCCe
Confidence            35799999999999999999999999 65  3455543     3455565   3799999999999999985    8889


Q ss_pred             EEEEEcCCCccccchhhhHHhh
Q psy12573         83 VVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        83 vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      ||+|+|||++++..++|.++.+
T Consensus        78 Vv~i~GDG~f~m~~~eL~Ta~~   99 (202)
T PRK06163         78 VIALEGDGSLLMQLGALGTIAA   99 (202)
T ss_pred             EEEEEcchHHHHHHHHHHHHHH
Confidence            9999999999999999988753

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=99.29  E-value=4.9e-11  Score=114.38  Aligned_cols=169  Identities=35%  Similarity=0.485  Sum_probs=109.4

Q ss_pred             CCCCCHHHHHHHHHhhCCC--CceEEeCCCh-hhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          6 SVPLNYYAAIHAVQVSIPD--NCIIVGEGAN-TMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~-~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      +.|+++.++++.|++.+++  |.+++.||++ ..|..++ +..+.|+.++++..+++|||++|.+++++++     ++.+
T Consensus       363 ~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-----~~~~  436 (554)
T TIGR03254       363 ESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNV-IDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-----TGKP  436 (554)
T ss_pred             CCCcCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHh-cccCCCCcEeeCCCCCcCCchHHHHHHHHhc-----CCCc
Confidence            4689999999999999974  6777778554 4455444 7778888899999999999999999999996     3578


Q ss_pred             EEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcC
Q psy12573         83 VVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK  162 (315)
Q Consensus        83 vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~  162 (315)
                      ||+|+|||++.|++++|.++.+..-  +-.   +..+||.-.  ....+..   ..+. .-.+..|....|+..+++.  
T Consensus       437 vv~i~GDGsf~m~~~EL~Ta~r~~l--~v~---~vV~NN~~~--~~~~~~~---~~~~-~~~~~~~~~~~df~~la~a--  503 (554)
T TIGR03254       437 VVALEGDSAFGFSGMEVETICRYNL--PVC---VVIFNNGGI--YRGDDVN---VVGA-DPAPTVLVHGARYDKMMKA--  503 (554)
T ss_pred             EEEEEcCchhcccHHHHHHHHHcCC--CEE---EEEEeChhh--hhhhhhh---hcCC-CCCccccCCCCCHHHHHHH--
Confidence            9999999999999999999876221  110   000111000  0000000   0000 0011233345788877776  


Q ss_pred             CCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        163 FSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       163 ~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      |+....+ ....++...+......++|++..|
T Consensus       504 ~G~~~~~v~~~~el~~al~~a~~~~~p~lIev  535 (554)
T TIGR03254       504 FGGVGYNVTTPDELKAALNEALASGKPTLINA  535 (554)
T ss_pred             CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            5665555 556666666666556677775443

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK11269 glyoxylate carboligase; Provisional

Probab=99.29  E-value=2.8e-11  Score=116.75  Aligned_cols=94  Identities=24%  Similarity=0.330  Sum_probs=85.0

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++|+.+++.|++.+++|.+++.| |.+..|..++ +..++++.++++..+++|||++|.++++++..    |+.+||
T Consensus       367 ~~~l~~~~~~~~l~~~l~~d~ivv~d~g~~~~~~~~~-~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~----p~r~Vv  441 (591)
T PRK11269        367 NVPIKPQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQF-LHVYKPRHWINCGQAGPLGWTIPAALGVRAAD----PDRNVV  441 (591)
T ss_pred             CCCcCHHHHHHHHHHhcCCCcEEEECCcHHHHHHHHh-cccCCCCcEEeCCccccccchhhhHHhhhhhC----CCCcEE
Confidence            45799999999999999999999999 7777788777 77888889999888999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||++.+++++|.+..+
T Consensus       442 ~i~GDG~f~m~~~eL~Ta~~  461 (591)
T PRK11269        442 ALSGDYDFQFLIEELAVGAQ  461 (591)
T ss_pred             EEEccchhhcCHHHHHHHHH
Confidence            99999999999999999876

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=99.28  E-value=6.1e-11  Score=114.03  Aligned_cols=94  Identities=21%  Similarity=0.281  Sum_probs=84.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ..|++|..+++.|++.+++|.+++.| |.+..|..++ +..+++++++++..+++|||++|.+++.++..    ++.+||
T Consensus       356 ~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~----p~~~vv  430 (578)
T PRK06546        356 HTPIHPEYVASILDELAADDAVFTVDTGMCNVWAARY-ITPNGRRRVIGSFRHGSMANALPHAIGAQLAD----PGRQVI  430 (578)
T ss_pred             CCCcCHHHHHHHHHHhccCCcEEEECCcHHHHHHHHh-cCCCCCceEEccCCcccccchhHHHHHHHHhC----CCCcEE
Confidence            35899999999999999999999999 7788888887 77777889998888999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++.++++++.+..+
T Consensus       431 ~i~GDGsf~~~~~el~Ta~~  450 (578)
T PRK06546        431 SMSGDGGLSMLLGELLTVKL  450 (578)
T ss_pred             EEEcCchHhhhHHHHHHHHH
Confidence            99999999999999988765

>PRK08322 acetolactate synthase; Reviewed

Probab=99.27  E-value=6.7e-11  Score=113.36  Aligned_cols=164  Identities=21%  Similarity=0.245  Sum_probs=115.3

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.|+++.++++.|++.+++|.+++.| |.+..|..++ +..+++..++++..+++|||++|.+++.++..    |+.++|
T Consensus       354 ~~~l~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~vv  428 (547)
T PRK08322        354 RFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFARN-YRAYEPNTCLLDNALATMGAGLPSAIAAKLVH----PDRKVL  428 (547)
T ss_pred             CCCcCHHHHHHHHHHHCCCCeEEEECCcHHHHHHHHh-cccCCCCCEEcCCCcccccchhHHHHHHHHhC----CCCcEE
Confidence            34799999999999999999999999 8888899887 77888889998888999999999999999985    888999


Q ss_pred             EEEcCCCccccchhhhHHhhhccC-------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhh
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEG-------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA  157 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~  157 (315)
                      +++|||++++++++|.+..+...+       +..+ ..   ++... .... ... .          +..+ ...|+..+
T Consensus       429 ~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~~-g~---~~~~~-~~~~-~~~-~----------~~~~-~~~df~~l  490 (547)
T PRK08322        429 AVCGDGGFMMNSQELETAVRLGLPLVVLILNDNAY-GM---IRWKQ-ENMG-FED-F----------GLDF-GNPDFVKY  490 (547)
T ss_pred             EEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCCc-ch---HHHHH-Hhhc-CCc-c----------cccC-CCCCHHHH
Confidence            999999999999999987652211       1100 00   00000 0000 000 0          0111 23578777


Q ss_pred             hhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        158 TTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       158 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      ++.  |+....+ ....++...+......++|.+..|.
T Consensus       491 A~a--~G~~~~~v~~~~eL~~al~~a~~~~~p~lIev~  526 (547)
T PRK08322        491 AES--YGAKGYRVESADDLLPTLEEALAQPGVHVIDCP  526 (547)
T ss_pred             HHH--CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence            776  5555555 5556666666666666777765543

>KOG4166|consensus

Probab=99.27  E-value=5.8e-11  Score=104.54  Aligned_cols=164  Identities=20%  Similarity=0.235  Sum_probs=117.4

Q ss_pred             CCCCCCHHHHHHHHHhhCCC---CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCC
Q psy12573          5 ESVPLNYYAAIHAVQVSIPD---NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPG   80 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~   80 (315)
                      ...-|+||.+++.|++..++   ..||++. |.|++|.++. ++..+|+.+++++++|+||+++|+++++.++.    |+
T Consensus       468 pGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqf-y~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~----P~  542 (675)
T KOG4166|consen  468 PGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQF-YNWKKPRQWLTSGGLGTMGFGLPAAIGASVAN----PD  542 (675)
T ss_pred             CccccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHH-hcccCccceeecCCccccccCcchhhcccccC----cc
Confidence            34569999999999998765   4566666 9999999998 99999999999999999999999999999985    88


Q ss_pred             CeEEEEEcCCCccccchhhhHHhhhcc-------CchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccC
Q psy12573         81 KRVVCVQGDSAFGFSGMELETLAVDKE-------GRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCD  153 (315)
Q Consensus        81 ~~vvvl~g~g~~~~aG~Dl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D  153 (315)
                      --||=|.||+.|.+.+.+|.+......       |+. -.....+.+++++.-.....   .             -.-.|
T Consensus       543 ~iViDIDGDaSF~Mt~~ELat~rq~~~PVKiLiLNNe-eqGMVtQWq~lFYe~rysHT---h-------------Q~nPn  605 (675)
T KOG4166|consen  543 AIVIDIDGDASFIMTVQELATIRQENLPVKILILNNE-EQGMVTQWQDLFYEARYSHT---H-------------QENPN  605 (675)
T ss_pred             cEEEeccCCceeeeehHhhhhhhhcCCceEEEEecch-hhhhHHHHHHHHHHhhhccc---c-------------ccCcc
Confidence            778888999998889999999876321       122 12233344555544332111   0             00145


Q ss_pred             hhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        154 LAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       154 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                      +..+++.  ++.+..+ .--.++...+..+...+.|++-.
T Consensus       606 f~klA~A--mGikalRV~K~edL~~k~keflsTkGPvLle  643 (675)
T KOG4166|consen  606 FLKLAAA--MGIKALRVTKKEDLREKIKEFLSTKGPVLLE  643 (675)
T ss_pred             HHHHHHh--cCCchheeehHHHHHHHHHHHhCCCCCeEEE
Confidence            5555554  4555555 45556666666777788887543

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=99.26  E-value=5.9e-11  Score=113.95  Aligned_cols=94  Identities=27%  Similarity=0.406  Sum_probs=84.9

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.++++..+++.|++.+|+|.+++.| |.+..|..++ +..+.|..++++..+++|||++|.+++.++..    ++.+||
T Consensus       360 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~----~~~~vv  434 (558)
T TIGR00118       360 EEGIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQF-YPFRKPRRFITSGGLGTMGFGLPAAIGAKVAK----PESTVI  434 (558)
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHh-cccCCCCeEEeCCccccccchhhHHHhhhhhC----CCCcEE
Confidence            45799999999999999999999999 7777788777 88888999999999999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||+++++.++|.++.+
T Consensus       435 ~~~GDG~f~~~~~eL~ta~~  454 (558)
T TIGR00118       435 CITGDGSFQMNLQELSTAVQ  454 (558)
T ss_pred             EEEcchHHhccHHHHHHHHH
Confidence            99999999999999988765

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=99.25  E-value=6.5e-11  Score=114.16  Aligned_cols=94  Identities=29%  Similarity=0.472  Sum_probs=85.1

Q ss_pred             CCCCCHHHHHHHHHhhCCC-----CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCC
Q psy12573          6 SVPLNYYAAIHAVQVSIPD-----NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP   79 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~   79 (315)
                      +.++++..+++.|++.+++     |.+++.| |.+..|..+. ++.+.|..++++..+++|||++|.+++.++..    +
T Consensus       362 ~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~-~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~----p  436 (586)
T PRK06276        362 DKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHF-FKTSAPRSFISSGGLGTMGFGFPAAIGAKVAK----P  436 (586)
T ss_pred             CCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcHHHHHHHHh-cccCCCCeEEcCCCccccccchhHHHhhhhhc----C
Confidence            4579999999999999998     9999999 7777888776 88888999999999999999999999999985    7


Q ss_pred             CCeEEEEEcCCCccccchhhhHHhh
Q psy12573         80 GKRVVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        80 ~~~vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +.+||+++|||++++++++|.++.+
T Consensus       437 ~~~Vv~i~GDGsf~m~~~eL~Ta~~  461 (586)
T PRK06276        437 DANVIAITGDGGFLMNSQELATIAE  461 (586)
T ss_pred             CCcEEEEEcchHhhccHHHHHHHHH
Confidence            7899999999999999999998876

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.24  E-value=4.8e-11  Score=99.89  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573         66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG  145 (315)
Q Consensus        66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G  145 (315)
                      .++.++|.++..|+++++|+|+    .||.|+|+..+..                                         
T Consensus        24 ~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-----------------------------------------   58 (211)
T cd07019          24 DTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-----------------------------------------   58 (211)
T ss_pred             HHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-----------------------------------------
Confidence            8899999999999999999997    5678888654310                                         


Q ss_pred             chhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeC
Q psy12573        146 CQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST  221 (315)
Q Consensus       146 ~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~  221 (315)
                                                   +...+..++.++||+|+.++|.+.++|+.|+++||.+++++.+.++.
T Consensus        59 -----------------------------~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs  105 (211)
T cd07019          59 -----------------------------IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS  105 (211)
T ss_pred             -----------------------------HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE
Confidence                                         01233456778999999999999999999999999999999988753

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>KOG1684|consensus

Probab=99.23  E-value=6.4e-12  Score=108.25  Aligned_cols=186  Identities=18%  Similarity=0.198  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcE
Q psy12573        111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPI  189 (315)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpv  189 (315)
                      ..+.+|...+.+...+..+.||.|++++|+++|+|.+++...-+|++.+.+.|.+||.. |++|+.+..+ .+.++|   
T Consensus       116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy-~lsrlp---  191 (401)
T KOG1684|consen  116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASY-FLSRLP---  191 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCcccee-ehhhCc---
Confidence            45678888889999999999999999999999999999999999999999999999999 9999999876 445555   


Q ss_pred             EEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHH---HhhhcC-------HHHHHHHHhc-CCC--
Q psy12573        190 LAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVA---LTRKVP-------LGVVRSMTIT-GIP--  255 (315)
Q Consensus       190 Ia~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~---l~~~~g-------~~~a~~~~~~-g~~--  255 (315)
                           | -  .|.+|.+++..+.++|.       ...||..+- .+..   +..+++       .+...+.+.. ...  
T Consensus       192 -----g-~--lg~YLgLTG~rl~GaD~-------~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~  256 (401)
T KOG1684|consen  192 -----G-Y--LGLYLGLTGQRLSGADA-------LRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAK  256 (401)
T ss_pred             -----c-H--HHHhhhhccceecchHH-------HHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCC
Confidence                 4 2  35999999999999888       777877543 2222   222222       1222222221 111  


Q ss_pred             -CCHHHHHHcCccccccCCc---------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        256 -ISAQDAYNAGLITRVVSSN---------------EELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       256 -~~a~~a~~~Glv~~v~~~~---------------~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                       -+-.....+.+++.++..+               .+..+++.+..+.|.+.+|.+++.+.+.++++...+|+++|
T Consensus       257 ~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l  332 (401)
T KOG1684|consen  257 DESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCL  332 (401)
T ss_pred             CccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHH
Confidence             0111112334445544331               23345677778889999999999999999999988998875

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.23  E-value=1.3e-10  Score=111.87  Aligned_cols=93  Identities=25%  Similarity=0.359  Sum_probs=84.4

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      .+++|..+++.|++.+++|.+++.| |.+..|..++ +..+.++.++++..+++||+++|.+++.++..    ++.+||+
T Consensus       370 ~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~----p~~~vv~  444 (574)
T PRK06882        370 DVIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALH-YPFDKPRRWINSGGAGTMGFGLPAAIGVKFAH----PEATVVC  444 (574)
T ss_pred             CCcCHHHHHHHHHhhcCCCeEEEecCchhHHHHHHh-ccccCCCcEEeCCCcccccchhHHHHHHHhhc----CCCcEEE
Confidence            4799999999999999999999999 7777888877 88888899999999999999999999999985    7789999


Q ss_pred             EEcCCCccccchhhhHHhh
Q psy12573         86 VQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+|||++++++.+|.+..+
T Consensus       445 i~GDG~f~~~~~eL~ta~~  463 (574)
T PRK06882        445 VTGDGSIQMNIQELSTAKQ  463 (574)
T ss_pred             EEcchhhhccHHHHHHHHH
Confidence            9999999999999998865

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=99.23  E-value=1.3e-10  Score=111.77  Aligned_cols=167  Identities=37%  Similarity=0.551  Sum_probs=108.2

Q ss_pred             CCCCCHHHHHHHHHhhCC--CCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          6 SVPLNYYAAIHAVQVSIP--DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      +.|+++..+++.|++.++  +|.+++.||++..+.+...+....|++.+++..+++|||++|.+++++++     ++.+|
T Consensus       370 ~~~l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-----~~~~v  444 (569)
T PRK09259        370 TQPMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-----TGKPV  444 (569)
T ss_pred             CCCcCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-----CCCcE
Confidence            468999999999999994  47888778655444444336677778888888899999999999999997     36689


Q ss_pred             EEEEcCCCccccchhhhHHhhhccCchhHHHHHHH--HHHHHHHHHcC-CCcEEEEEeeEEecccchhccccChhhhhhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFST--CSDLMLSILRH-PVPILAIISGVAAAAGCQLVATCDLAIATTA  160 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~  160 (315)
                      |+|+|||+++|++++|.++.+...  |-.-..+|+  +.......... ..+           .+..+....|+..+++.
T Consensus       445 v~i~GDG~f~m~~~EL~Ta~r~~l--pi~~vV~NN~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~~lA~a  511 (569)
T PRK09259        445 VAIEGDSAFGFSGMEVETICRYNL--PVTVVIFNNGGIYRGDDVNLSGAGDP-----------SPTVLVHHARYDKMMEA  511 (569)
T ss_pred             EEEecCccccccHHHHHHHHHcCC--CEEEEEEeChhHHHHHHHHhhcCCCc-----------cccccCCCCCHHHHHHH
Confidence            999999999999999999876321  110000000  00000000000 010           11223345788877776


Q ss_pred             cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        161 SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       161 ~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                        |+....+ ....++...+......++|++-.
T Consensus       512 --~G~~~~~v~~~~el~~al~~a~~~~~p~lIe  542 (569)
T PRK09259        512 --FGGVGYNVTTPDELRHALTEAIASGKPTLIN  542 (569)
T ss_pred             --CCCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence              5555555 55556666666655667777543

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=99.20  E-value=2.2e-10  Score=110.42  Aligned_cols=94  Identities=22%  Similarity=0.364  Sum_probs=81.3

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCc-ccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPR-HRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~-n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      +.+++|+++++.|++.++++.+++.| |.+..|..++ +...++. +++++..+++||+++|.+++.+++.    ++.+|
T Consensus       384 ~~~i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~----~~~~v  458 (578)
T PRK06112        384 ASPIRPERIMAELQAVLTGDTIVVADASYSSIWVANF-LTARRAGMRFLTPRGLAGLGWGVPMAIGAKVAR----PGAPV  458 (578)
T ss_pred             CCCcCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHh-cCccCCCceEECCCCccccccHHHHHHHHHhhC----CCCcE
Confidence            45799999999999999999999999 7777888776 6554544 7888888999999999999999874    78899


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+++|||++++.+.++.+..+
T Consensus       459 v~i~GDGsf~~~~~el~ta~~  479 (578)
T PRK06112        459 ICLVGDGGFAHVWAELETARR  479 (578)
T ss_pred             EEEEcchHHHhHHHHHHHHHH
Confidence            999999999888999888765

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=99.20  E-value=2e-10  Score=110.73  Aligned_cols=92  Identities=30%  Similarity=0.476  Sum_probs=81.3

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.||++.++++.|++.+| |.+++.| |.+..|..++ +.. .+..++++..+++|||++|.++++++..    ++.+||
T Consensus       380 ~~~l~~~~~~~~l~~~~~-d~iv~~d~G~~~~~~~~~-~~~-~~~~~~~~~~~g~mG~glpaaiGaala~----p~~~vv  452 (585)
T CHL00099        380 STSLSPQEVINEISQLAP-DAYFTTDVGQHQMWAAQF-LKC-KPRKWLSSAGLGTMGYGLPAAIGAQIAH----PNELVI  452 (585)
T ss_pred             CCCcCHHHHHHHHHhhCC-CeEEEECCcHHHHHHHHh-ccC-CCCcEEcCccccchhhhHHHHHHHHHhC----CCCeEE
Confidence            468999999999999998 8999999 7767888887 543 5678898889999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++++++++|.++.+
T Consensus       453 ~i~GDG~f~m~~~eL~Ta~~  472 (585)
T CHL00099        453 CISGDASFQMNLQELGTIAQ  472 (585)
T ss_pred             EEEcchhhhhhHHHHHHHHH
Confidence            99999999999999999875

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.18  E-value=3.3e-10  Score=90.87  Aligned_cols=91  Identities=16%  Similarity=0.268  Sum_probs=69.4

Q ss_pred             HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc--h------HH------HHh------h
Q psy12573        180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST--P------AV------ALT------R  239 (315)
Q Consensus       180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~--~------~~------~l~------~  239 (315)
                      ..+..++||+++.++|.+.++|..|+++||.+++.+.++|++.....+.....  .      ..      .+.      +
T Consensus        51 ~~l~~~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r  130 (161)
T cd00394          51 DALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENR  130 (161)
T ss_pred             HHHHHhCCCEEEEECChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34566779999999999999999999999999999999999988765544211  0      00      111      1


Q ss_pred             hcCHHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573        240 KVPLGVVRSMTITGIPISAQDAYNAGLITRV  270 (315)
Q Consensus       240 ~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v  270 (315)
                      .+......+.+..+..++++||+++|||+++
T Consensus       131 ~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         131 GQTTEKLEEDIEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             CCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence            1233456777888899999999999999875

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=99.17  E-value=4.9e-11  Score=105.26  Aligned_cols=170  Identities=18%  Similarity=0.209  Sum_probs=121.1

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+..+++|+|++|+|.+.|+|..+++.||++++++.++|+.|+.+ ++.+..+...+..+.    +     |..
T Consensus       113 ~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprl----v-----G~~  183 (360)
T TIGR03200       113 FNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLM----I-----GCE  183 (360)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHh----h-----CHH
Confidence            445667788899999999999999999999999999999999999999999 999887766543222    2     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHH----hh---hcCHHHHHH--HHhcCCCCCHHHHH-HcCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VAL----TR---KVPLGVVRS--MTITGIPISAQDAY-NAGL  266 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l----~~---~~g~~~a~~--~~~~g~~~~a~~a~-~~Gl  266 (315)
                      .+  ++++++|+.+.+.++       .++|++..+.. ..+    .+   .+-.....+  -+..|+...++++. -..+
T Consensus       184 rA--~~llltGe~~sA~EA-------~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~  254 (360)
T TIGR03200       184 QA--MVSGTLCEPWSAHKA-------KRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKEL  254 (360)
T ss_pred             HH--HHHHHhCCcCcHHHH-------HHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHH
Confidence            76  999999999999999       67777744411 111    00   000111111  23345555543331 2234


Q ss_pred             cccc-cCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q psy12573        267 ITRV-VSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQM  307 (315)
Q Consensus       267 v~~v-~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~  307 (315)
                      +... .+. ..+++.+.+++.+++..-|..+..+|..++...
T Consensus       255 ~~~~~~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  295 (360)
T TIGR03200       255 IKQGTIDL-SLLDEAVEALCAKLLNTFPECLTKSIEELRKPK  295 (360)
T ss_pred             HhcccchH-hHHHHHHHHHHHHHHHhchHHHHHHHHHhhhHH
Confidence            4443 334 678899999999999999999999998887643

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.17  E-value=1.7e-10  Score=92.37  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=76.7

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch----------------HHHHhhh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP----------------AVALTRK  240 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~----------------~~~l~~~  240 (315)
                      .+++.+..+++|+++.++|.|.++|..++++||.+++.+.++|+++....+..+...                ...+.+.
T Consensus        49 ~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~  128 (160)
T cd07016          49 AIYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEK  128 (160)
T ss_pred             HHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888999999999999999999999999999999999999877766543321                1125566


Q ss_pred             cC--HHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573        241 VP--LGVVRSMTITGIPISAQDAYNAGLITRV  270 (315)
Q Consensus       241 ~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v  270 (315)
                      .|  ....++++..+..++++||+++|++|++
T Consensus       129 ~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v  160 (160)
T cd07016         129 TGLSEEEISALMDAETWLTAQEAVELGFADEI  160 (160)
T ss_pred             hCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence            77  5677778777778999999999999875

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=99.17  E-value=3.6e-11  Score=104.17  Aligned_cols=150  Identities=21%  Similarity=0.313  Sum_probs=102.8

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+..    +.-+     |+.
T Consensus        89 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~v-----G~~  159 (260)
T PRK05980         89 GQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRL----PRLA-----GRK  159 (260)
T ss_pred             HHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHH----Hhhc-----CHH
Confidence            345667788899999999999999999999999999999999999999999 998877765432    2222     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc---CH---HHHHHHHhcCCCCCHHHH--
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV---PL---GVVRSMTITGIPISAQDA--  261 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~---g~---~~a~~~~~~g~~~~a~~a--  261 (315)
                      .+  .+++++++.+.+.++       .++|++.... . .      .+.+.+   .+   ...|+.+..+...+.+++  
T Consensus       160 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~  230 (260)
T PRK05980        160 RA--LELLLTGDAFSAERA-------LEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLL  230 (260)
T ss_pred             HH--HHHHHcCCccCHHHH-------HHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            77  999999999999999       7778875542 1 1      122111   11   234555554433333333  


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHH
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .+.......+.+ ++..+...+|.++
T Consensus       231 ~e~~~~~~~~~~-~~~~e~~~af~~k  255 (260)
T PRK05980        231 IESEQFARMAGS-ADLREGLAAWIER  255 (260)
T ss_pred             HHHHHHHHHhcC-hhHHHHHHHHhcc
Confidence            222333444555 5666666666544

>PLN02600 enoyl-CoA hydratase

Probab=99.16  E-value=3.3e-11  Score=103.75  Aligned_cols=149  Identities=16%  Similarity=0.242  Sum_probs=107.2

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+    .+     |+..
T Consensus        78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~~-----G~~~  148 (251)
T PLN02600         78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPR----LV-----GRSR  148 (251)
T ss_pred             HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHH----Hh-----CHHH
Confidence            45566788899999999999999999999999999999999999999999 98887665543322    12     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---P---LGVVRSMTITGIPISAQDA--Y  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~  262 (315)
                      +  .+|+++++.+.+.++       .++|++....  .      ..+.+.+   +   ....|+++......+..++  .
T Consensus       149 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~  219 (251)
T PLN02600        149 A--KELIFTGRRIGAREA-------ASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEI  219 (251)
T ss_pred             H--HHHHHhCCccCHHHH-------HHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            7  999999999999999       6777764431  1      1122222   1   1355777665444444443  3


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +......++.+ ++..+...+|.++
T Consensus       220 e~~~~~~~~~~-~d~~eg~~af~ek  243 (251)
T PLN02600        220 EEECYEQVLKT-KDRLEGLAAFAEK  243 (251)
T ss_pred             HHHHHHHHhCC-HHHHHHHHHHhcC
Confidence            33455566677 7788888887765

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=99.16  E-value=5.5e-10  Score=107.19  Aligned_cols=93  Identities=28%  Similarity=0.362  Sum_probs=81.1

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.++++.++++.|++.+++|.+++.| |++..|..++ +....++..+++. +++|||++|.+++.++..    ++.+||
T Consensus       364 ~~~~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~-~~~~~~~~~~~~~-~g~mG~glpaaiGa~la~----p~~~vv  437 (557)
T PRK08199        364 PGAVQLGEVMAWLRERLPADAIITNGAGNYATWLHRF-FRFRRYRTQLAPT-SGSMGYGLPAAIAAKLLF----PERTVV  437 (557)
T ss_pred             CCCcCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHh-cCcCCCCeEECCC-CccccchHHHHHHHHHhC----CCCcEE
Confidence            35799999999999999999999999 7777887777 7777777777654 599999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++++++.+|.+..+
T Consensus       438 ~i~GDGsf~~~~~el~ta~~  457 (557)
T PRK08199        438 AFAGDGCFLMNGQELATAVQ  457 (557)
T ss_pred             EEEcchHhhccHHHHHHHHH
Confidence            99999999999999988764

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=99.15  E-value=5.2e-11  Score=103.84  Aligned_cols=152  Identities=14%  Similarity=0.178  Sum_probs=109.2

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hH-HHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-IL-VSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      .++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++ .+..+..+...+         +.|+..
T Consensus        98 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~---------~~G~~~  168 (278)
T PLN03214         98 TFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGR---------VIDRKV  168 (278)
T ss_pred             HHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHH---------hcCHHH
Confidence            4556788899999999999999999999999999999999999999999 88 476655442222         127777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc------CHHHHHHHHhcCCCCCHHHHH--
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV------PLGVVRSMTITGIPISAQDAY--  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~------g~~~a~~~~~~g~~~~a~~a~--  262 (315)
                      +  .+++++++.+.+.++       .++|++....  .      ..+.+.+      .....|+++......+.++++  
T Consensus       169 a--~~llltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~  239 (278)
T PLN03214        169 A--ESLLLRGRLVRPAEA-------KQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEE  239 (278)
T ss_pred             H--HHHHHcCCccCHHHH-------HHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7  999999999999999       6777774431  1      1122221      123566666554333333332  


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                      +.......+.+ ++..+...+|.+||.++
T Consensus       240 e~~~~~~~~~s-~d~~egi~aflek~~~~  267 (278)
T PLN03214        240 EAKGGWKMLSE-PSIIKALGGVMERLSSG  267 (278)
T ss_pred             HHHHHHHHhCC-HHHHHHHHHHHHHHhhc
Confidence            22334456778 89999999999999875

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=99.14  E-value=6.9e-10  Score=88.40  Aligned_cols=145  Identities=19%  Similarity=0.197  Sum_probs=97.4

Q ss_pred             HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573         12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS   90 (315)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g   90 (315)
                      ..+++.|.+.+ +|.+++.| |.+..|.  . +....|+++++   +++||+++|.+++.++..    + .+||+|+|||
T Consensus         2 ~~~~~~l~~~l-~d~~vv~d~G~~~~~~--~-~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG   69 (157)
T cd02001           2 IAAIAEIIEAS-GDTPIVSTTGYASREL--Y-DVQDRDGHFYM---LGSMGLAGSIGLGLALGL----S-RKVIVVDGDG   69 (157)
T ss_pred             HHHHHHHHHhC-CCCEEEeCCCHhHHHH--H-HhhcCCCCEEe---ecchhhHHHHHHHHHhcC----C-CcEEEEECch
Confidence            46788999999 78889999 7766655  2 34456778876   799999999999999974    4 7899999999


Q ss_pred             CccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcE-EEEEeeEEecc---cchhccccChhhhhhhcCCCCc
Q psy12573         91 AFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPI-LAIISGVAAAA---GCQLVATCDLAIATTASKFSTP  166 (315)
Q Consensus        91 ~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~v~G~~~g~---G~~f~~g~D~~~~~~~~~~~~~  166 (315)
                      ++.+..+++.+..+.                       .+.|+ +.++|--.+|.   ........|+..+++.  ++.+
T Consensus        70 ~f~m~~~el~t~~~~-----------------------~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a--~G~~  124 (157)
T cd02001          70 SLLMNPGVLLTAGEF-----------------------TPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAA--CGYL  124 (157)
T ss_pred             HHHhcccHHHHHHHh-----------------------cCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHH--CCCc
Confidence            988888888776531                       01232 33333322221   1122235788877776  5555


Q ss_pred             chh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        167 GYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       167 ~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      ..+ ....++...+......+.|.+..+
T Consensus       125 ~~~v~~~~el~~al~~a~~~~gp~vi~v  152 (157)
T cd02001         125 VLSAPLLGGLGSEFAGLLATTGPTLLHA  152 (157)
T ss_pred             eEEcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            555 555566666666656677776544

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=99.13  E-value=5.1e-11  Score=103.96  Aligned_cols=152  Identities=15%  Similarity=0.247  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ..+++++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+..    +..+     |
T Consensus        98 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~v-----G  168 (275)
T PLN02664         98 KFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRL----PSIV-----G  168 (275)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHH----HHHh-----C
Confidence            34456677888999999999999999999999999999999999999999999 998877655432    2223     8


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch---H------HHHhhhcC------HHHHHHHHhcCCCCCHHH
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP---A------VALTRKVP------LGVVRSMTITGIPISAQD  260 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~---~------~~l~~~~g------~~~a~~~~~~g~~~~a~~  260 (315)
                      +..+  .+++++++.+.+.++       .++|++....   .      ..+.+.+.      ....|+++..+...+..+
T Consensus       169 ~~~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~  239 (275)
T PLN02664        169 YGNA--MELALTGRRFSGSEA-------KELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQ  239 (275)
T ss_pred             HHHH--HHHHHhCCCCCHHHH-------HHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHH
Confidence            8887  999999999999999       7777774431   1      11222221      135677776554444444


Q ss_pred             HHHc--CccccccCCchHHHHHHHHHHHH
Q psy12573        261 AYNA--GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       261 a~~~--Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +.+.  .+....+.+ ++..+...+|.++
T Consensus       240 ~~~~e~~~~~~~~~~-~d~~eg~~af~ek  267 (275)
T PLN02664        240 GLDYVATWNSAMLVS-DDLNEAVSAQIQK  267 (275)
T ss_pred             HHHHHHHHHHHhccC-hhHHHHHHHHhcc
Confidence            4332  234455566 7788888877765

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=99.13  E-value=6.4e-11  Score=102.42  Aligned_cols=149  Identities=20%  Similarity=0.267  Sum_probs=103.2

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      +.++..+..+|+|+|++++|.+.|+|..++..||++++.+.++|+.|+.+ |+.+.++..++..+.    +     |...
T Consensus        84 ~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----v-----G~~~  154 (257)
T PRK07658         84 QVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRY----V-----GKAK  154 (257)
T ss_pred             HHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHH----h-----CHHH
Confidence            34567788899999999999999999999999999999999999999999 999887765433221    2     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDA--Y  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~  262 (315)
                      +  .+|+++++.+.+.++       .++|++....        ...+.+.+   .   ....|+++..+...+.+++  .
T Consensus       155 a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~  225 (257)
T PRK07658        155 A--LEMMLTSEPITGAEA-------LKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKR  225 (257)
T ss_pred             H--HHHHHcCCCcCHHHH-------HHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            7  999999999999999       6667664431        11122211   1   1345666655443343333  2


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +..+...++.+ ++..+...+|.++
T Consensus       226 e~~~~~~~~~~-~~~~egi~af~~k  249 (257)
T PRK07658        226 EAKIFGEVFTS-EDAKEGVQAFLEK  249 (257)
T ss_pred             HHHHHHHHhCC-HHHHHHHHHHHcC
Confidence            23344455556 6666666666554

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=99.12  E-value=8.6e-11  Score=101.40  Aligned_cols=149  Identities=21%  Similarity=0.225  Sum_probs=101.7

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +.+++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+ +..+..+    .+|.-+     |+.
T Consensus        89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~----~l~~~i-----G~~  158 (256)
T PRK06143         89 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAA----LLPRLI-----GWA  158 (256)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHH----HHHHhc-----CHH
Confidence            345667788999999999999999999999999999999999999999999 87 5444333    222223     887


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhcC------HHHHHHHHhcCCCCCHHHH--
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKVP------LGVVRSMTITGIPISAQDA--  261 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~g------~~~a~~~~~~g~~~~a~~a--  261 (315)
                      .+  .+++++++.+.+.++       .++|++.... . .      .+.+.+.      ....|+++......+.+++  
T Consensus       159 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~  229 (256)
T PRK06143        159 RT--RWLLLTGETIDAAQA-------LAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAID  229 (256)
T ss_pred             HH--HHHHHcCCcCCHHHH-------HHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence            77  999999999999999       7888875541 1 1      1222211      1245666654433333333  


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHH
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .+.......+.+ ++..+...+|.++
T Consensus       230 ~e~~~~~~~~~~-~d~~e~~~af~ek  254 (256)
T PRK06143        230 DSVAEFGAAFLT-GEPQRHMAAFLNR  254 (256)
T ss_pred             HHHHHHHHHhcC-hHHHHHHHHHHhh
Confidence            223334455556 6666666666554

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=99.12  E-value=4.3e-11  Score=103.45  Aligned_cols=149  Identities=17%  Similarity=0.212  Sum_probs=101.6

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      .+++..+.++++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+    .+     |+..
T Consensus        85 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~i-----G~~~  155 (258)
T PRK09076         85 GEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPW----LV-----GEGW  155 (258)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHH----Hh-----CHHH
Confidence            35566788999999999999999999999999999999999999999999 99887765543222    12     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHHH--
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDAY--  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a~--  262 (315)
                      +  .+|+++++.+.+.++       .++|++....        ...+.+.+.      ....|+++..+...+..+..  
T Consensus       156 a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~  226 (258)
T PRK09076        156 A--KRMILCGERVDAATA-------LRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALAL  226 (258)
T ss_pred             H--HHHHHcCCcCCHHHH-------HHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            7  999999999999999       6777774431        111222211      12445655544333333332  


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +......++.+ ++..+...+|.++
T Consensus       227 e~~~~~~~~~~-~~~~eg~~af~~k  250 (258)
T PRK09076        227 ERELFVDLFDT-EDQREGVNAFLEK  250 (258)
T ss_pred             HHHHHHHHhcC-chHHHHHHHHhcC
Confidence            22334445555 5666666666543

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=99.12  E-value=4.3e-11  Score=103.20  Aligned_cols=149  Identities=18%  Similarity=0.181  Sum_probs=103.6

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+...++|+|++|||.+.|+|..++..||++++.+.++|+.|+.+ |+.+.++..++..+.    +     |+..
T Consensus        82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----i-----G~~~  152 (255)
T PRK08150         82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRL----I-----GVAR  152 (255)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHH----h-----CHHH
Confidence            34566788899999999999999999999999999999999999999999 998887766533222    2     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHHHH-
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDAYN-  263 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a~~-  263 (315)
                      +  .+|+++++.+.+.++       .++|++....        ...+.+.+.      ....|+++......+.+++.+ 
T Consensus       153 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~  223 (255)
T PRK08150        153 M--TDMMLTGRVYDAQEG-------ERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFV  223 (255)
T ss_pred             H--HHHHHcCCcCCHHHH-------HHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            6  999999999999999       6777774331        112222221      124566666554444444322 


Q ss_pred             -cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 -AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 -~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       .-.....+.+ ++..+...+|.++
T Consensus       224 e~~~~~~~~~s-~d~~eg~~af~~k  247 (255)
T PRK08150        224 ESLMAAVAQSA-PEAKERLRAFLEK  247 (255)
T ss_pred             HHHHHHHHhcC-HHHHHHHHHHhcc
Confidence             2223344555 6666666666554

>KOG1680|consensus

Probab=99.12  E-value=1.7e-11  Score=102.39  Aligned_cols=141  Identities=19%  Similarity=0.268  Sum_probs=108.2

Q ss_pred             cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHh
Q psy12573        128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVA  206 (315)
Q Consensus       128 ~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l  206 (315)
                      +.++|+|++++|++.|+|.+|+.-||++++.+.++|+.++.+ |.++.++++.+.    +.     +.|...+  +++.+
T Consensus       125 ~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl----~r-----~vG~s~A--le~~l  193 (290)
T KOG1680|consen  125 RLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRL----PR-----IVGKSRA--LEMIL  193 (290)
T ss_pred             hcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhH----HH-----HhChHHH--HHHHH
Confidence            678999999999999999999999999999999999999999 999999887643    22     3488888  99999


Q ss_pred             hcCeeeeeCCceeeCCCccCCCCCCc-h-------HHHHhhhcCH------HHHHHHHhcCCCCCHHHHHHcC--ccccc
Q psy12573        207 TCDLAIATTASKFSTPGARHGIFCST-P-------AVALTRKVPL------GVVRSMTITGIPISAQDAYNAG--LITRV  270 (315)
Q Consensus       207 ~~d~~~a~~~a~~~~pe~~~Gl~~~~-~-------~~~l~~~~g~------~~a~~~~~~g~~~~a~~a~~~G--lv~~v  270 (315)
                      +++.+.|.++       .++|++..+ +       +..|.+.+..      ...|+.+..+...+..++++++  +....
T Consensus       194 tg~~~~AqeA-------~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~  266 (290)
T KOG1680|consen  194 TGRRLGAQEA-------KKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGST  266 (290)
T ss_pred             hcCcccHHHH-------HhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhh
Confidence            9999999999       888888544 1       1234443332      3678888887777877775554  33444


Q ss_pred             cCCchHHHHHHHHHHHH
Q psy12573        271 VSSNEELESETKVLTSA  287 (315)
Q Consensus       271 ~~~~~~~~~~~~~~~~~  287 (315)
                      +.. ++-.|...+|+++
T Consensus       267 ~~~-~d~~Eg~~~f~~k  282 (290)
T KOG1680|consen  267 FAT-EDRLEGMTAFAEK  282 (290)
T ss_pred             hhh-HHHHHHHHHhccc
Confidence            445 5666666666443

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=99.12  E-value=7.5e-11  Score=102.12  Aligned_cols=149  Identities=17%  Similarity=0.256  Sum_probs=101.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.    +     |+..
T Consensus        87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~----v-----G~~~  157 (260)
T PRK07657         87 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRL----I-----GVGR  157 (260)
T ss_pred             HHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHH----h-----CHHH
Confidence            45566788899999999999999999999999999999999999999999 998877655433221    2     7666


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDA--Y  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~  262 (315)
                      +  .+++++++.+.+.++       .++|++.... .       ..+.+.+   +   ....|+++..+...+.+++  .
T Consensus       158 a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~  228 (260)
T PRK07657        158 A--KELIYTGRRISAQEA-------KEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQI  228 (260)
T ss_pred             H--HHHHHhCCCCCHHHH-------HHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            6  899999999999999       6777775431 1       1122221   1   1245566554433333333  2


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +.......+.+ ++..+...+|.++
T Consensus       229 e~~~~~~~~~~-~~~~e~~~af~~~  252 (260)
T PRK07657        229 EKQAYEGTIPT-KDRLEGLQAFKEK  252 (260)
T ss_pred             HHHHHHHHhcC-HhHHHHHHHHhcC
Confidence            22334444555 5666666665544

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=99.11  E-value=1.8e-09  Score=88.54  Aligned_cols=84  Identities=29%  Similarity=0.357  Sum_probs=65.3

Q ss_pred             HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhc-cC---CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573         12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLL-NN---LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV   86 (315)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~-~~---~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl   86 (315)
                      .++++.|.+.+|+|.+++.| |.......  .+. .+   .+..+++.   ++||+++|.+++.++..    |+.+||+|
T Consensus         2 ~~~~~~l~~~l~~d~ivv~d~G~~~~~~~--~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala~----p~~~Vv~i   72 (188)
T cd03371           2 EDAIEIVLSRAPATAAVVSTTGMTSRELF--ELRDRPGGGHAQDFLTV---GSMGHASQIALGIALAR----PDRKVVCI   72 (188)
T ss_pred             HHHHHHHHhhcCCCCEEEECCCcchHHHH--HhhcCCCCCccCceeec---CccccHHHHHHHHHHhC----CCCcEEEE
Confidence            46788999999999999999 75442222  222 22   34666664   99999999999999985    78899999


Q ss_pred             EcCCCccccchhhhHHhh
Q psy12573         87 QGDSAFGFSGMELETLAV  104 (315)
Q Consensus        87 ~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|||+++++.++|.+..+
T Consensus        73 ~GDG~f~m~~~eL~ta~~   90 (188)
T cd03371          73 DGDGAALMHMGGLATIGG   90 (188)
T ss_pred             eCCcHHHhhccHHHHHHH
Confidence            999999888888877653

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=99.11  E-value=5.6e-11  Score=103.63  Aligned_cols=152  Identities=18%  Similarity=0.183  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ..+++++..+..+|+|+|++|+|.+.|+|..+++.||++++++.++|+.|+.+ |+.+..+..+...+.    +     |
T Consensus        96 ~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----~-----G  166 (272)
T PRK06142         96 LRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRI----I-----G  166 (272)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHH----h-----C
Confidence            34556777888999999999999999999999999999999999999999999 998877765433222    2     7


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H--------HHHhhhc---CH---HHHHHHHhcCCCCCHHH
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A--------VALTRKV---PL---GVVRSMTITGIPISAQD  260 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~--------~~l~~~~---g~---~~a~~~~~~g~~~~a~~  260 (315)
                      +..+  .+++++++.+.+.++       .++|++.... .        ..+.+.+   ++   ...|+++......+.++
T Consensus       167 ~~~a--~~l~l~g~~~~a~eA-------~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~  237 (272)
T PRK06142        167 DGHL--RELALTGRDIDAAEA-------EKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVAD  237 (272)
T ss_pred             HHHH--HHHHHhCCCcCHHHH-------HHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHH
Confidence            7777  999999999999999       7777774431 1        1122222   11   24566665443333333


Q ss_pred             H--HHcCccccccCCchHHHHHHHHHHHH
Q psy12573        261 A--YNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       261 a--~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +  .+..+....+.+ ++..+.+.+|.++
T Consensus       238 ~~~~~~~~~~~~~~~-~d~~egv~af~~k  265 (272)
T PRK06142        238 GLRYVATWNAAMLPS-KDLTEAIAAHMEK  265 (272)
T ss_pred             HHHHHHHHHHHHhcC-ccHHHHHHHHhcC
Confidence            3  222344445566 6777777777654

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=99.11  E-value=6.3e-11  Score=103.28  Aligned_cols=150  Identities=16%  Similarity=0.110  Sum_probs=107.3

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      +.++..+..+|+|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.    +     |+..
T Consensus        94 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----i-----G~~~  164 (275)
T PRK09120         94 YGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADT----V-----GHRD  164 (275)
T ss_pred             HHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHH----c-----CHHH
Confidence            45567788999999999999999999999999999999999999999999 999887665433222    2     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---CH---HHHHHHHhcCCCCCHHHHHHc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---PL---GVVRSMTITGIPISAQDAYNA  264 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g~---~~a~~~~~~g~~~~a~~a~~~  264 (315)
                      +  .+|+++++.+.+.++       .++|++....        ...+.+.+   ++   ...|+++......+..++.+.
T Consensus       165 a--~~llltg~~~~A~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~  235 (275)
T PRK09120        165 A--LYYIMTGETFTGRKA-------AEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDY  235 (275)
T ss_pred             H--HHHHhcCCccCHHHH-------HHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            7  999999999999999       7778775441        11222222   11   355777766555555555332


Q ss_pred             C----ccccccCCch-HHHHHHHHHHHHH
Q psy12573        265 G----LITRVVSSNE-ELESETKVLTSAI  288 (315)
Q Consensus       265 G----lv~~v~~~~~-~~~~~~~~~~~~l  288 (315)
                      .    .....+.+ + +..+...+|.++-
T Consensus       236 e~~~~~~~~~~~~-~~d~~eg~~afl~kr  263 (275)
T PRK09120        236 LYAKLEQANSLDP-EGGREEGLKQFLDDK  263 (275)
T ss_pred             HHHHHHHHHhhCC-HHHHHHHHHHHHhcc
Confidence            1    22234555 5 6777877777653

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=99.11  E-value=1e-10  Score=100.57  Aligned_cols=146  Identities=14%  Similarity=0.215  Sum_probs=102.6

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ...+..+.++++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+......+       +.-+     |+..
T Consensus        84 ~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~~~~l-------~~~v-----g~~~  151 (249)
T PRK07938         84 FAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGAATHL-------QRLV-----PQHL  151 (249)
T ss_pred             HHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchhHHHH-------HHhc-----CHHH
Confidence            34566788899999999999999999999999999999999999999999 875322211       1112     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHH--H
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDA--Y  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a--~  262 (315)
                      +  .+++++++.+.+.++       .++|++....        ...+.+.+.      ...+|+++......+.+++  .
T Consensus       152 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~  222 (249)
T PRK07938        152 M--RALFFTAATITAAEL-------HHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRW  222 (249)
T ss_pred             H--HHHHHhCCcCCHHHH-------HHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            7  999999999999999       7778775431        112332221      1356777765544333333  3


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +..+....+.+ ++..+...+|.+|
T Consensus       223 e~~~~~~~~~~-~d~~eg~~af~ek  246 (249)
T PRK07938        223 EQGFTFELNLA-GVSDEHRDAFVEK  246 (249)
T ss_pred             HHHHHHHHhcC-ccHHHHHHHHHhc
Confidence            33444455667 7788888777765

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=99.10  E-value=5.8e-11  Score=102.84  Aligned_cols=96  Identities=23%  Similarity=0.258  Sum_probs=80.3

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+++..+..+...+..         |+.
T Consensus        87 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v---------g~~  157 (260)
T PRK07511         87 LHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARAL---------PRQ  157 (260)
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHh---------CHH
Confidence            456677888999999999999999999999999999999999999999999 9998776655433322         777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       158 ~a--~~l~ltg~~~~a~eA-------~~~Glv~~v  183 (260)
T PRK07511        158 LA--TELLLEGKPISAERL-------HALGVVNRL  183 (260)
T ss_pred             HH--HHHHHhCCCCCHHHH-------HHcCCccEe
Confidence            66  999999999999999       666776443

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]

Probab=99.10  E-value=2.5e-10  Score=103.31  Aligned_cols=96  Identities=23%  Similarity=0.277  Sum_probs=85.7

Q ss_pred             CCCCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCC
Q psy12573          3 QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK   81 (315)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~   81 (315)
                      +..+.||+++++++.+...+.++++|+.| |.+.+.+.+  +..|+...++....||++||.+|++||++++.    ++.
T Consensus       357 ~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~~--~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~----~dr  430 (557)
T COG3961         357 PPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGALD--IRLPKGATFISQPLWGSIGYTLPAALGAALAA----PDR  430 (557)
T ss_pred             CCCCCcccHHHHHHHHHhhCCCCCEEEEcccccccccee--eecCCCCeEEcccchhhcccccHhhhhhhhcC----CCc
Confidence            44578999999999999999999999999 877766654  67899999999999999999999999999985    889


Q ss_pred             eEEEEEcCCCccccchhhhHHhh
Q psy12573         82 RVVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        82 ~vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+|+|.|||.++.+.++++++.+
T Consensus       431 R~IL~iGDGs~QlTvQEiStmiR  453 (557)
T COG3961         431 RVILFIGDGSLQLTVQEISTMIR  453 (557)
T ss_pred             cEEEEEcCchhhhhHHHHHHHHH
Confidence            99999999999999999988865

>PRK07524 hypothetical protein; Provisional

Probab=99.10  E-value=1.1e-09  Score=104.80  Aligned_cols=166  Identities=22%  Similarity=0.342  Sum_probs=112.5

Q ss_pred             CCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCccccc-CCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLD-AGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~-~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      ++++.++++.|++.+| +.+++.| |++..|..+. +..++|..+++ +..+++|||++|.+++.++..    |+.+||+
T Consensus       357 ~~~~~~~~~~l~~~l~-~~~i~~d~g~~~~~~~~~-~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~----p~~~vv~  430 (535)
T PRK07524        357 TAAQVALLDTILAALP-DAIFVGDSTQPVYAGNLY-FDADAPRRWFNASTGYGTLGYGLPAAIGAALGA----PERPVVC  430 (535)
T ss_pred             ccCHHHHHHHHHHhCC-CCEEEeCCcHHHHHHHHh-cccCCCCceEeCCCCcccccchHHHHHHHHHhC----CCCcEEE
Confidence            5678889999999997 6777888 6666666666 88888999998 888999999999999999985    8889999


Q ss_pred             EEcCCCccccchhhhHHhhhccCchhH----HH-HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh
Q psy12573         86 VQGDSAFGFSGMELETLAVDKEGRPKL----DE-IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA  160 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~  160 (315)
                      ++|||++++++++|.+..+...  |-.    +| .+..+...... ...+ +           .+..+ ...|+..+++.
T Consensus       431 i~GDG~f~~~~~el~ta~~~~l--pi~~vV~NN~~~g~i~~~~~~-~~~~-~-----------~~~~~-~~~d~~~~A~a  494 (535)
T PRK07524        431 LVGDGGLQFTLPELASAVEADL--PLIVLLWNNDGYGEIRRYMVA-RDIE-P-----------VGVDP-YTPDFIALARA  494 (535)
T ss_pred             EEcchHHhhhHHHHHHHHHhCC--CeEEEEEECCchHHHHHHHHH-hcCC-c-----------cccCC-CCCCHHHHHHH
Confidence            9999999999999988875221  110    00 00101111100 0000 0           01112 23677777776


Q ss_pred             cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        161 SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       161 ~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                        |+.+..+ ....++...+......++|++..|.=.+
T Consensus       495 --~G~~~~~v~~~~el~~al~~a~~~~~p~liev~~~~  530 (535)
T PRK07524        495 --FGCAAERVADLEQLQAALRAAFARPGPTLIEVDQAC  530 (535)
T ss_pred             --CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEEECCc
Confidence              4555544 5556666777777778889887776433

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=99.10  E-value=4.9e-11  Score=102.08  Aligned_cols=146  Identities=19%  Similarity=0.238  Sum_probs=100.1

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+...++|+|++|+|.+.|+|..+...||++++++.++|+.|+.+ |+.+..+..+...+.    +     |+..+
T Consensus        77 ~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~----~-----G~~~a  147 (243)
T PRK07854         77 EMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSL----V-----GGGRA  147 (243)
T ss_pred             HHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHH----h-----CHHHH
Confidence            4556778899999999999999999999999999999999999999999 998876655433221    2     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch----HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCcc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP----AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLI  267 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~----~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv  267 (315)
                        .+|+++++.+.+.++       .++|++....    ...+.+.+   +   ....|+++...  .+.+++.  +.-..
T Consensus       148 --~~l~ltg~~~~a~eA-------~~~Glv~~v~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~  216 (243)
T PRK07854        148 --RAMLLGAEKLTAEQA-------LATGMANRIGTLADAQAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELF  216 (243)
T ss_pred             --HHHHHcCCCcCHHHH-------HHCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHH
Confidence              999999999999999       7777775542    11222222   1   12456665543  2223322  22233


Q ss_pred             ccccCCchHHHHHHHHHHHH
Q psy12573        268 TRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ..++.+ ++..+...+|.++
T Consensus       217 ~~~~~~-~d~~eg~~af~~k  235 (243)
T PRK07854        217 DKAWAS-QDAIEAQVARIEK  235 (243)
T ss_pred             HHHhcC-chHHHHHHHHhCC
Confidence            444555 5666666666544

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=99.09  E-value=9.2e-11  Score=101.26  Aligned_cols=96  Identities=24%  Similarity=0.363  Sum_probs=80.3

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+...|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+..    ++-+     |+.
T Consensus        87 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~v-----g~~  157 (255)
T PRK07260         87 VNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLL----TRAI-----GLN  157 (255)
T ss_pred             HHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhh----HHhh-----CHH
Confidence            445667888999999999999999999999999999999999999999999 998877655422    2222     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+|+++++.+.++++       .++|++...
T Consensus       158 ~a--~~l~l~g~~~sa~eA-------~~~Glv~~v  183 (255)
T PRK07260        158 RA--THLAMTGEALTAEKA-------LEYGFVYRV  183 (255)
T ss_pred             HH--HHHHHhCCccCHHHH-------HHcCCccee
Confidence            76  999999999999999       777777544

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=99.08  E-value=9.1e-11  Score=101.41  Aligned_cols=93  Identities=26%  Similarity=0.394  Sum_probs=78.5

Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      .+..+...|+|+|+++||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..++..+    -+     |+..+ 
T Consensus        86 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----G~~~a-  155 (257)
T PRK05862         86 NWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTR----AV-----GKAKA-  155 (257)
T ss_pred             HHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHH----Hh-----CHHHH-
Confidence            455678899999999999999999999999999999999999999999 99988776543322    12     77776 


Q ss_pred             hhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        201 GCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                       .+++++++.+.+.++       .++|++...
T Consensus       156 -~~l~l~g~~~~a~eA-------~~~Glv~~v  179 (257)
T PRK05862        156 -MDLCLTGRMMDAAEA-------ERAGLVSRV  179 (257)
T ss_pred             -HHHHHhCCccCHHHH-------HHcCCCCEe
Confidence             999999999999999       777877554

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=99.08  E-value=1.5e-10  Score=100.48  Aligned_cols=148  Identities=20%  Similarity=0.260  Sum_probs=101.4

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+ ..+.    +     |...
T Consensus        91 ~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~----v-----G~~~  160 (265)
T PRK05674         91 AELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKA----I-----GERA  160 (265)
T ss_pred             HHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHH----h-----CHHH
Confidence            45667788999999999999999999999999999999999999999999 9988765432 2221    2     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--HH------HHhhhc---C---HHHHHHHHhcCCCCCHHHHHH-
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--AV------ALTRKV---P---LGVVRSMTITGIPISAQDAYN-  263 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~~------~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~-  263 (315)
                      +  .+++++++.+.+.++       ..+|++....  ..      .+.+.+   .   ....|+++......+..++++ 
T Consensus       161 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~  231 (265)
T PRK05674        161 A--RRYALTAERFDGRRA-------RELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRR  231 (265)
T ss_pred             H--HHHHHhCcccCHHHH-------HHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHH
Confidence            7  999999999999999       7788875541  11      122211   1   124466655544443333321 


Q ss_pred             --cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 --AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 --~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                        ......++.+ ++..+...+|.++
T Consensus       232 ~~~~~~~~~~~s-~d~~e~~~af~~k  256 (265)
T PRK05674        232 YCENAIARIRVS-AEGQEGLRAFLEK  256 (265)
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHHcc
Confidence              1233344455 6666666666554

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=99.07  E-value=2.7e-09  Score=101.90  Aligned_cols=94  Identities=24%  Similarity=0.291  Sum_probs=81.8

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      .+.++++..+++.|++.++++.+++.| |++..|..+. +..+++..+++.. +++||+++|.+++.++..    ++.++
T Consensus       355 ~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~-~g~mG~~lp~aiGa~la~----p~~~v  428 (530)
T PRK07092        355 PGEPLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEH-LPMRRQGSFYTMA-SGGLGYGLPAAVGVALAQ----PGRRV  428 (530)
T ss_pred             CCCCcCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHh-cCcCCCCceEccC-CCcccchHHHHHHHHHhC----CCCeE
Confidence            356799999999999999999999999 7777888776 7777888888764 499999999999999985    78899


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+|+|||++.++..+|.+..+
T Consensus       429 v~i~GDG~f~~~~~eL~ta~~  449 (530)
T PRK07092        429 IGLIGDGSAMYSIQALWSAAQ  449 (530)
T ss_pred             EEEEeCchHhhhHHHHHHHHH
Confidence            999999999988888888765

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=99.07  E-value=1.3e-10  Score=101.59  Aligned_cols=150  Identities=24%  Similarity=0.298  Sum_probs=103.9

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHH-HHHHHHHHHhcCCCcEEEEEccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVS-TCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      +++++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+ .++..+...+.    +     |+
T Consensus       102 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~----v-----G~  172 (277)
T PRK08258        102 TGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRI----I-----GQ  172 (277)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHH----h-----CH
Confidence            345677888999999999999999999999999999999999999999999 8874 55544322221    2     77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH-
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---P---LGVVRSMTITGIPISAQDA-  261 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a-  261 (315)
                      ..+  .+|+++++.+.+.++       .++|++....  .      ..+.+.+   +   ....|+++......+.+++ 
T Consensus       173 ~~a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~  243 (277)
T PRK08258        173 GRA--SELLYTGRSMSAEEG-------ERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAI  243 (277)
T ss_pred             HHH--HHHHHcCCCCCHHHH-------HHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHH
Confidence            776  999999999999999       7777775441  1      1122222   1   1245666655444333333 


Q ss_pred             -HHcCccccccCCchHHHHHHHHHHHH
Q psy12573        262 -YNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       262 -~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       .+......++.+ ++..+...+|.++
T Consensus       244 ~~e~~~~~~~~~s-~d~~eg~~af~ek  269 (277)
T PRK08258        244 EAEAQAQAICMQT-EDFRRAYEAFVAK  269 (277)
T ss_pred             HHHHHHHHHHhcC-chHHHHHHHHhcC
Confidence             233344555666 6777777777654

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=99.07  E-value=8.4e-11  Score=101.57  Aligned_cols=148  Identities=22%  Similarity=0.296  Sum_probs=102.8

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .++..+..+++|+|++|||.+.|+|..++..||++++.+.++|+.|+.+ |+.+.++..+..    +..+     |+..+
T Consensus        84 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l----~~~v-----G~~~a  154 (256)
T TIGR02280        84 PLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSL----PRLV-----GRARA  154 (256)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHH----HHHh-----CHHHH
Confidence            4556778899999999999999999999999999999999999999999 988876655432    2222     88777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--HH
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDA--YN  263 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~~  263 (315)
                        .+|+++++.+.+.++       .++|++.... .       ..+.+.+   +   ....|+++......+..++  .+
T Consensus       155 --~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e  225 (256)
T TIGR02280       155 --MGLAMLGEKLDARTA-------ASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLE  225 (256)
T ss_pred             --HHHHHcCCCCCHHHH-------HHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence              999999999999999       7778775441 1       1122222   1   1345666654433333333  22


Q ss_pred             cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ..+...++.+ ++..+...+|.++
T Consensus       226 ~~~~~~~~~~-~d~~eg~~af~~k  248 (256)
T TIGR02280       226 RDLQRELGRS-ADYAEGVTAFLDK  248 (256)
T ss_pred             HHHHHHHhcC-hhHHHHHHHHHcC
Confidence            3344445556 6666666666554

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=99.07  E-value=1.2e-10  Score=100.79  Aligned_cols=94  Identities=21%  Similarity=0.345  Sum_probs=78.9

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.    +     |+..+
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----v-----G~~~a  159 (261)
T PRK08138         89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRA----V-----GKFKA  159 (261)
T ss_pred             HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHH----h-----CHHHH
Confidence            4556778899999999999999999999999999999999999999999 998887765533222    2     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+|+++++.+.+.++       .++|++...
T Consensus       160 --~~l~l~g~~~~a~eA-------~~~Glv~~v  183 (261)
T PRK08138        160 --MRMALTGCMVPAPEA-------LAIGLVSEV  183 (261)
T ss_pred             --HHHHHcCCCCCHHHH-------HHCCCCcEe
Confidence              999999999999999       677777443

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=99.06  E-value=1.7e-09  Score=104.20  Aligned_cols=93  Identities=14%  Similarity=-0.040  Sum_probs=78.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++++++.|++.+|++.+++.| |.+..|..++ +..+.+...+.+..+++||+++|.++++++.     ++.+||
T Consensus       373 ~~~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~~~-~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-----~~~~vv  446 (568)
T PRK07449        373 EDTFTEAKVAAALADLLPEGGQLFVGNSLPVRDVDAF-GQLPDGYPVYSNRGASGIDGLLSTAAGVARA-----SAKPTV  446 (568)
T ss_pred             cCCccHHHHHHHHHHhCCCCCeEEEECcHHHHHHHHc-cCcCCCceEEecCCccchhhHHHHHHHHHhc-----CCCCEE
Confidence            46799999999999999999988888 6666666555 6666667777777778999999999999987     467899


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++++++.++.++.+
T Consensus       447 ~i~GDGsf~~~~~eL~Ta~r  466 (568)
T PRK07449        447 ALIGDLSFLHDLNGLLLLKQ  466 (568)
T ss_pred             EEechHHhhcCcHHHHhhcc
Confidence            99999999999999988654

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=99.06  E-value=1.4e-10  Score=100.41  Aligned_cols=148  Identities=22%  Similarity=0.327  Sum_probs=101.7

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+...|+|+|++|+|.+.|+|..+...||++++++.++|+.|+.+ ++.+.++..+...+    .+     |+..+
T Consensus        88 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----G~~~a  158 (260)
T PRK05809         88 KVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLAR----IV-----GPGKA  158 (260)
T ss_pred             HHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHH----Hh-----CHHHH
Confidence            4566788999999999999999999999999999999999999999999 99887776543322    22     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc------CHHHHHHHHhcCCCCCHHHHH--H
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV------PLGVVRSMTITGIPISAQDAY--N  263 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~------g~~~a~~~~~~g~~~~a~~a~--~  263 (315)
                        .+++++++.+.+.++       .++|++.... . .      .+.+.+      .....|+++..+...+.+++.  +
T Consensus       159 --~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e  229 (260)
T PRK05809        159 --KELIYTGDMINAEEA-------LRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIE  229 (260)
T ss_pred             --HHHHHhCCCCCHHHH-------HHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence              999999999999999       7777775441 1 1      122211      112456666554433333332  2


Q ss_pred             cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ......++.+ ++..+...++.++
T Consensus       230 ~~~~~~~~~~-~~~~egi~af~~~  252 (260)
T PRK05809        230 AEDFGECFST-EDQTEGMTAFVEK  252 (260)
T ss_pred             HHHHHHHhcC-HHHHHHHHHHhcC
Confidence            2333444555 5666666665544

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=99.06  E-value=1.1e-10  Score=101.29  Aligned_cols=148  Identities=18%  Similarity=0.221  Sum_probs=103.2

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..++..+..+++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ ++.+.++..+ .+.   + +     |...
T Consensus        90 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~---~-v-----G~~~  159 (262)
T PRK07468         90 AMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVA---R-M-----GEAN  159 (262)
T ss_pred             HHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHh---h-c-----cHHH
Confidence            34566788999999999999999999999999999999999999999999 9988776543 221   1 2     8877


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HH-------HHhhhc---CH---HHHHHHHhcCCCCCHHHH--H
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AV-------ALTRKV---PL---GVVRSMTITGIPISAQDA--Y  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~-------~l~~~~---g~---~~a~~~~~~g~~~~a~~a--~  262 (315)
                      +  .+|+++++.+.+.++       ..+|++.... ..       .+.+.+   .+   ...|+++........+++  .
T Consensus       160 a--~~lll~g~~~~a~eA-------~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~  230 (262)
T PRK07468        160 A--RRVFMSARLFDAEEA-------VRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDA  230 (262)
T ss_pred             H--HHHHHhCCccCHHHH-------HHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHH
Confidence            7  999999999999999       7788875441 11       122221   11   244666554433232332  3


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +.......+.+ ++..+...+|.++
T Consensus       231 e~~~~~~~~~s-~d~~e~~~af~~k  254 (262)
T PRK07468        231 TIEALADTWET-EEAREGIAAFFDK  254 (262)
T ss_pred             HHHHHHHHhcC-HHHHHHHHHHHcC
Confidence            33445555666 6666666666554

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=99.06  E-value=1.1e-10  Score=101.51  Aligned_cols=149  Identities=18%  Similarity=0.202  Sum_probs=104.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      +.++..+...++|+|+++||.+.|+|..+++.||++++++.++|+.|+.+ ++.+.++..+...+.    +     |+..
T Consensus        96 ~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----v-----G~~~  166 (269)
T PRK06127         96 EAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDL----V-----GPSA  166 (269)
T ss_pred             HHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHH----h-----CHHH
Confidence            34566788999999999999999999999999999999999999999999 988876655433222    2     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV---P---LGVVRSMTITGIPISAQDA--Y  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~  262 (315)
                      +  .+++++++.+.+.++       .++|++.... . .      .+.+.+   +   ....|+++......+.++.  .
T Consensus       167 a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~  237 (269)
T PRK06127        167 A--KDLFYTARRFDAAEA-------LRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAA  237 (269)
T ss_pred             H--HHHHHcCCCCCHHHH-------HHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            6  999999999999999       7788875541 1 1      122221   1   1345666655443333332  3


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +......++.+ ++..+...+|.++
T Consensus       238 e~~~~~~~~~~-~d~~e~~~af~ek  261 (269)
T PRK06127        238 CQALVAACFDS-EDYREGRAAFMEK  261 (269)
T ss_pred             HHHHHHHHhcC-hHHHHHHHHHhcC
Confidence            33445555666 6677777666654

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=99.06  E-value=2.3e-10  Score=98.90  Aligned_cols=146  Identities=19%  Similarity=0.313  Sum_probs=101.5

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+..+++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+......+.       .-+     |+..
T Consensus        87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~~l~-------~~~-----g~~~  154 (257)
T PRK06495         87 RECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGGGKHAM-------RLF-----GHSL  154 (257)
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCccccHHHHH-------HHh-----CHHH
Confidence            34566788899999999999999999999999999999999999999999 8763221111       112     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---P---LGVVRSMTITGIPISAQDAY--  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--  262 (315)
                      +  .+|+++++.+.++++       .++|++....  .      ..+.+.+   +   ....|+++......+..++.  
T Consensus       155 a--~~lll~g~~~~a~eA-------~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~  225 (257)
T PRK06495        155 T--RRMMLTGYRVPAAEL-------YRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRY  225 (257)
T ss_pred             H--HHHHHcCCeeCHHHH-------HHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            7  999999999999999       6777774431  1      1122221   1   23557776665555555543  


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +..+....+.+ ++..+...+|.++
T Consensus       226 e~~~~~~~~~s-~d~~egi~af~~k  249 (257)
T PRK06495        226 EQDITAKLAKT-EDAKEAQRAFLEK  249 (257)
T ss_pred             HHHHHHHHhcC-hHHHHHHHHHhcc
Confidence            22334445566 7777777777665

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=99.06  E-value=9.9e-11  Score=101.54  Aligned_cols=150  Identities=19%  Similarity=0.206  Sum_probs=101.2

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +.+.+..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.+         |+.
T Consensus        91 ~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~---------g~~  161 (262)
T PRK07509         91 AQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV---------RKD  161 (262)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh---------CHH
Confidence            345566778899999999999999999999999999999999999999999 9988776554332222         777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--HH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA------VALTRKV---P---LGVVRSMTITGIPISAQDA--YN  263 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~~  263 (315)
                      .+  .+++++++.+.+.++       .++|++.....      ..+.+.+   +   ....|+++......+.+++  .+
T Consensus       162 ~a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e  232 (262)
T PRK07509        162 VA--RELTYTARVFSAEEA-------LELGLVTHVSDDPLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARE  232 (262)
T ss_pred             HH--HHHHHcCCCcCHHHH-------HHcCChhhhhchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            76  999999999999999       66777754421      1122221   1   1244555554433333332  22


Q ss_pred             cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .-....++.+ ++..+...+|.++
T Consensus       233 ~~~~~~~~~~-~d~~e~~~af~ek  255 (262)
T PRK07509        233 SVEQIRLLLG-KNQKIAVKAQMKK  255 (262)
T ss_pred             HHHHHHHhcC-hhHHHHHHHHhcC
Confidence            2233344455 5566666655544

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=99.06  E-value=1e-10  Score=101.25  Aligned_cols=97  Identities=22%  Similarity=0.245  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      .+++++..+...|+|+|++|+|.+.|+|..++..||++++.+.++|+.|+.+ ++.+..+..+..    ++-+     |+
T Consensus        86 ~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L----~~~v-----g~  156 (260)
T PRK07659         86 TISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFL----QKRV-----GE  156 (260)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhH----HHhc-----CH
Confidence            3456677888999999999999999999999999999999999999999999 998876654432    2222     88


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+++++++.+.+.++       .++|++...
T Consensus       157 ~~a--~~l~ltg~~~~a~eA-------~~~Glv~~v  183 (260)
T PRK07659        157 NKA--KQIIWEGKKLSATEA-------LDLGLIDEV  183 (260)
T ss_pred             HHH--HHHHHhCCccCHHHH-------HHcCChHHH
Confidence            877  999999999999999       777777543

>PRK08266 hypothetical protein; Provisional

Probab=99.05  E-value=2.7e-09  Score=102.19  Aligned_cols=92  Identities=29%  Similarity=0.394  Sum_probs=78.9

Q ss_pred             CCCHHH-HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          8 PLNYYA-AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         8 ~~~~~~-~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      .++|+. +++.|++.+|+|.+++.| |++..|.... +..+.++.++++..+++|||++|.+++.++..    |+.++|+
T Consensus       351 ~~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~----p~~~vv~  425 (542)
T PRK08266        351 AVQPQASYLRAIREALPDDGIFVDELSQVGFASWFA-FPVYAPRTFVTCGYQGTLGYGFPTALGAKVAN----PDRPVVS  425 (542)
T ss_pred             cCCHHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHh-cccCCCCcEEeCCCCcccccHHHHHHHHHHhC----CCCcEEE
Confidence            467764 799999999999999999 6666666655 77778888898888899999999999999985    7889999


Q ss_pred             EEcCCCccccchhhhHHhh
Q psy12573         86 VQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~  104 (315)
                      ++|||++++++++|.+..+
T Consensus       426 v~GDG~f~~~~~eL~ta~~  444 (542)
T PRK08266        426 ITGDGGFMFGVQELATAVQ  444 (542)
T ss_pred             EEcchhhhccHHHHHHHHH
Confidence            9999999999999988765

>PRK08139 enoyl-CoA hydratase; Validated

Probab=99.05  E-value=9.7e-11  Score=101.66  Aligned_cols=149  Identities=27%  Similarity=0.448  Sum_probs=104.4

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +.+++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.... +..    +.-+     |..
T Consensus        93 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~-~~l----~r~v-----G~~  162 (266)
T PRK08139         93 CSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPM-VAL----SRNV-----PRK  162 (266)
T ss_pred             HHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccH-HHH----HHHh-----CHH
Confidence            445677888999999999999999999999999999999999999999999 88775532 221    2222     887


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+++++++.+.+.++       .++|++.... .       ..+.+.+   .   ....|+++..+...+.++++ 
T Consensus       163 ~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~  233 (266)
T PRK08139        163 QA--MEMLLTGEFIDAATA-------REWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYA  233 (266)
T ss_pred             HH--HHHHHcCCccCHHHH-------HHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence            77  999999999999999       7788875441 1       1122222   1   13556666655544444442 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +.......+.+ ++..+...+|.++
T Consensus       234 ~e~~~~~~~~~~-~d~~eg~~af~~k  258 (266)
T PRK08139        234 YAGDVMAENMMA-EDAEEGIDAFLEK  258 (266)
T ss_pred             HHHHHHHHHhcC-chHHHHHHHHhcC
Confidence             22333445556 6667777777654

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=99.05  E-value=1.2e-10  Score=100.57  Aligned_cols=147  Identities=21%  Similarity=0.330  Sum_probs=102.4

Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      ++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.    +     |+..+ 
T Consensus        84 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----i-----g~~~a-  153 (255)
T PRK09674         84 LWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRS----V-----GKSLA-  153 (255)
T ss_pred             HHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHH----h-----CHHHH-
Confidence            445678899999999999999999999999999999999999999999 998887765543322    2     77777 


Q ss_pred             hhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--Hc
Q psy12573        201 GCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDAY--NA  264 (315)
Q Consensus       201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~  264 (315)
                       .+++++++.+.+.++       .++|++.... .       ..+.+.+   +   ....|+++..+...+.++++  +.
T Consensus       154 -~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~  225 (255)
T PRK09674        154 -SQMVLTGESITAQQA-------QQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQER  225 (255)
T ss_pred             -HHHHHcCCccCHHHH-------HHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence             999999999999999       7777775441 1       1122221   1   12456666554444444432  22


Q ss_pred             CccccccCCchHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .....++.+ ++..+...+|.++
T Consensus       226 ~~~~~~~~~-~~~~e~i~af~~k  247 (255)
T PRK09674        226 QLFTLLAAT-EDRHEGISAFLEK  247 (255)
T ss_pred             HHHHHHhcC-HHHHHHHHHHhcc
Confidence            333445556 6666666666554

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=99.05  E-value=9.7e-11  Score=101.59  Aligned_cols=144  Identities=18%  Similarity=0.254  Sum_probs=101.2

Q ss_pred             HHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhH
Q psy12573        125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQ  203 (315)
Q Consensus       125 ~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~  203 (315)
                      .+..+++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.    +     |+..+  .+
T Consensus        95 ~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~----v-----G~~~a--~~  163 (263)
T PRK07799         95 KGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQ----I-----PYTVA--CD  163 (263)
T ss_pred             HHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHH----h-----CHHHH--HH
Confidence            457789999999999999999999999999999999999999999 998877655433222    2     77777  99


Q ss_pred             HHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCcc
Q psy12573        204 LVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLI  267 (315)
Q Consensus       204 l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv  267 (315)
                      |+++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++..+...+.+++.  +....
T Consensus       164 l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~  236 (263)
T PRK07799        164 LLLTGRHITAAEA-------KEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIG  236 (263)
T ss_pred             HHHcCCCCCHHHH-------HHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            9999999999999       6777764431        01122211   1   13556666655444444442  22344


Q ss_pred             ccccCCchHHHHHHHHHHHH
Q psy12573        268 TRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ..++.+ ++..+...+|.++
T Consensus       237 ~~~~~~-~~~~egi~af~~~  255 (263)
T PRK07799        237 IPVFLS-EDAKEGPRAFAEK  255 (263)
T ss_pred             HHHhcC-ccHHHHHHHHHcc
Confidence            455566 6677777777654

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=99.04  E-value=2.1e-09  Score=87.69  Aligned_cols=80  Identities=30%  Similarity=0.440  Sum_probs=64.2

Q ss_pred             HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573         12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS   90 (315)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g   90 (315)
                      .-++..|++.+++|.|++.| |.+..|..+       +..+++  .+++||+++|.+++.++..    ++.+||+|+|||
T Consensus        13 ~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~-------~~~~~~--~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG   79 (178)
T cd02008          13 RPSFYALRKAFKKDSIVSGDIGCYTLGALP-------PLNAID--TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDS   79 (178)
T ss_pred             hHHHHHHHHHhcCCeEEecCcCcccccccC-------Chhhcc--ccccCccHHHHHhhHHhhC----CCCCEEEEecCh
Confidence            45788999999999999999 877666531       222333  4799999999999999985    788999999999


Q ss_pred             Cccccc-hhhhHHhh
Q psy12573         91 AFGFSG-MELETLAV  104 (315)
Q Consensus        91 ~~~~aG-~Dl~~~~~  104 (315)
                      ++++.| .+|.+..+
T Consensus        80 ~f~~~g~~eL~ta~~   94 (178)
T cd02008          80 TFFHSGILGLINAVY   94 (178)
T ss_pred             HHhhccHHHHHHHHH
Confidence            988885 77777543

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=99.04  E-value=1.2e-10  Score=100.96  Aligned_cols=146  Identities=19%  Similarity=0.269  Sum_probs=104.9

Q ss_pred             HHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhh
Q psy12573        123 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAG  201 (315)
Q Consensus       123 ~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G  201 (315)
                      +..+..+++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.+         |+..+  
T Consensus        87 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~v---------g~~~a--  155 (261)
T PRK03580         87 LTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRL---------PPAIA--  155 (261)
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHh---------CHHHH--
Confidence            34567899999999999999999999999999999999999999999 9988776554332222         77776  


Q ss_pred             hHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHc---
Q psy12573        202 CQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAYNA---  264 (315)
Q Consensus       202 ~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~---  264 (315)
                      .+++++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++......+.+++.+.   
T Consensus       156 ~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~  228 (261)
T PRK03580        156 NEMVMTGRRMDAEEA-------LRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRS  228 (261)
T ss_pred             HHHHHhCCccCHHHH-------HHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            999999999999999       7778775431        11122222   1   1355777765555555555333   


Q ss_pred             ---CccccccCCchHHHHHHHHHHHH
Q psy12573        265 ---GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 ---Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                         .+...++.+ ++..+...+|.++
T Consensus       229 ~~~~~~~~~~~~-~d~~e~~~af~ek  253 (261)
T PRK03580        229 GVLKHYPSVLHS-EDALEGPRAFAEK  253 (261)
T ss_pred             hhHHHHHHHhcC-ccHHHHHHHHhcC
Confidence               133456666 7777777777765

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.04  E-value=5.3e-09  Score=87.81  Aligned_cols=94  Identities=23%  Similarity=0.330  Sum_probs=63.7

Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCc------------cCCCCCCc---h------------
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA------------RHGIFCST---P------------  233 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~------------~~Gl~~~~---~------------  233 (315)
                      .+.. +|||||.++|.+.++|+.++++||.+++.+.+.|+...+            ++|+-+..   +            
T Consensus        69 ~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~  147 (214)
T cd07022          69 AARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPL  147 (214)
T ss_pred             HHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCC
Confidence            3344 699999999999999999999999999999998754221            23332111   0            


Q ss_pred             --HH--HHh-----------------hhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHH
Q psy12573        234 --AV--ALT-----------------RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELE  278 (315)
Q Consensus       234 --~~--~l~-----------------~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~  278 (315)
                        ..  .+.                 |.+.....++++  |..+++++|++.||||++-.. +++.
T Consensus       148 s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~-~~~~  210 (214)
T cd07022         148 SDEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTL-DDAL  210 (214)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCH-HHHH
Confidence              00  000                 111222334444  889999999999999999765 5544

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=99.04  E-value=1.7e-10  Score=100.08  Aligned_cols=149  Identities=20%  Similarity=0.307  Sum_probs=102.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..++..+..+++|+|++|||.+.|+|..++..||++++++.++|..|+.+ |+.+..+..+..    +..+     |+..
T Consensus        89 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l----~~~v-----G~~~  159 (262)
T PRK08140         89 NPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFL----PRLV-----GMAR  159 (262)
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHH----HHHh-----CHHH
Confidence            34567788999999999999999999999999999999999999999999 988876655422    2222     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--H
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDA--Y  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~  262 (315)
                      +  .+|+++++.+.+.++       .++|++.... .       ..+.+.+   +   ....|+++......+..++  .
T Consensus       160 a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~  230 (262)
T PRK08140        160 A--LGLALLGEKLSAEQA-------EQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDL  230 (262)
T ss_pred             H--HHHHHcCCCcCHHHH-------HHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHH
Confidence            7  999999999999999       7778774441 1       1122222   1   1245565554333333333  2


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +..+...++.+ ++..+...+|.++
T Consensus       231 e~~~~~~~~~~-~~~~e~~~af~~k  254 (262)
T PRK08140        231 ERDLQREAGRS-ADYAEGVSAFLEK  254 (262)
T ss_pred             HHHHHHHHhcC-hhHHHHHHHHhcC
Confidence            33344455556 6666666666554

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=99.04  E-value=1.5e-10  Score=100.53  Aligned_cols=96  Identities=29%  Similarity=0.451  Sum_probs=79.9

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +..++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+..    +..+     |+.
T Consensus        92 ~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l----~~~v-----G~~  162 (266)
T PRK09245         92 IQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLL----PRII-----GMA  162 (266)
T ss_pred             HHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhH----HHHh-----hHH
Confidence            345566788899999999999999999999999999999999999999999 998877655422    2222     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+|+++++.+.+.++       ..+|++...
T Consensus       163 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~v  188 (266)
T PRK09245        163 RA--AEMAFTGDAIDAATA-------LEWGLVSRV  188 (266)
T ss_pred             HH--HHHHHcCCCcCHHHH-------HHcCCccee
Confidence            77  999999999999999       777887544

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=99.03  E-value=3.3e-11  Score=103.54  Aligned_cols=152  Identities=19%  Similarity=0.293  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ..++.++..+...|+|+|++++|.+.|+|..++..||++++.+.++|+.|+.+ |++|..+......+.+         |
T Consensus        77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~---------g  147 (245)
T PF00378_consen   77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLI---------G  147 (245)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHH---------H
T ss_pred             hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceee---------e
Confidence            34567888899999999999999999999999999999999999999999999 9988665554332222         6


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc------CHHHHHHHHhcCCCCCHHHH
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV------PLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~------g~~~a~~~~~~g~~~~a~~a  261 (315)
                      +..+  .+++++++.+.+.++       .++|++.... . .      .+.+.+      .....|+.+.........++
T Consensus       148 ~~~a--~~l~l~g~~~~a~eA-------~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~  218 (245)
T PF00378_consen  148 PSRA--RELLLTGEPISAEEA-------LELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEA  218 (245)
T ss_dssp             HHHH--HHHHHHTCEEEHHHH-------HHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             cccc--cccccccccchhHHH-------HhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            6666  899999999999999       8888885541 1 1      111111      11244444443322222222


Q ss_pred             --HHcCccccccCCchHHHHHHHHHHHH
Q psy12573        262 --YNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       262 --~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                        .+..+..+++.+ ++..+...+|.+|
T Consensus       219 ~~~~~~~~~~~~~~-~~~~e~~~~f~eK  245 (245)
T PF00378_consen  219 LEFEQDLFAECFKS-EDFQEGIAAFLEK  245 (245)
T ss_dssp             HHHHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHhCc
Confidence              333455556666 6777777666654

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=99.03  E-value=2.2e-10  Score=99.21  Aligned_cols=95  Identities=27%  Similarity=0.364  Sum_probs=79.2

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+...|+|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++...+..+    -+     |+..
T Consensus        86 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~----~~-----G~~~  156 (259)
T PRK06688         86 NRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPR----LI-----GRAR  156 (259)
T ss_pred             HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHH----Hh-----hHHH
Confidence            45666788999999999999999999999999999999999999999999 99887765443221    12     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+++++++.+.+.++       .++|++...
T Consensus       157 a--~~l~l~g~~~~a~eA-------~~~Glv~~v  181 (259)
T PRK06688        157 A--AEMLLLGEPLSAEEA-------LRIGLVNRV  181 (259)
T ss_pred             H--HHHHHhCCccCHHHH-------HHcCCccee
Confidence            6  999999999999999       777777544

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=99.03  E-value=1.4e-10  Score=100.30  Aligned_cols=94  Identities=23%  Similarity=0.313  Sum_probs=78.4

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .++..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+......    .-+     |+..+
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~----~~v-----G~~~a  158 (259)
T TIGR01929        88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLA----RIV-----GQKKA  158 (259)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHH----HHh-----HHHHH
Confidence            3455678899999999999999999999999999999999999999999 9887655443222    122     87777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+++++++.+.+.++       .++|++...
T Consensus       159 --~~l~l~g~~~~a~eA-------~~~Glv~~v  182 (259)
T TIGR01929       159 --REIWFLCRQYDAEQA-------LDMGLVNTV  182 (259)
T ss_pred             --HHHHHhCCccCHHHH-------HHcCCcccc
Confidence              999999999999999       788888654

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.02  E-value=2.1e-09  Score=102.67  Aligned_cols=109  Identities=16%  Similarity=0.194  Sum_probs=79.5

Q ss_pred             HHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCcee------eCCC------ccCCCCCCch-HHH--------
Q psy12573        178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF------STPG------ARHGIFCSTP-AVA--------  236 (315)
Q Consensus       178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~------~~pe------~~~Gl~~~~~-~~~--------  236 (315)
                      .+..+...+||||+.+.|.|.+||..++++||.+++++.+.+      +.+.      .++|+.++.. ...        
T Consensus       370 ~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~  449 (584)
T TIGR00705       370 ELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLR  449 (584)
T ss_pred             HHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCC
Confidence            334456778999999999999999999999999999999877      4442      4677775431 111        


Q ss_pred             --------------------HhhhcCHHH-----HHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        237 --------------------LTRKVPLGV-----VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       237 --------------------l~~~~g~~~-----a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                                          +...++..+     ..+.+.+|+.+++++|+++|||+++-.-     +.+.+.+++++..
T Consensus       450 ~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~-----~~Ai~~a~~la~~  524 (584)
T TIGR00705       450 PLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL-----DEAVAKAAKLAHC  524 (584)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH-----HHHHHHHHHHcCC
Confidence                                112333333     5677889999999999999999999433     4455556666665

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=99.02  E-value=1.4e-10  Score=100.37  Aligned_cols=143  Identities=20%  Similarity=0.282  Sum_probs=101.6

Q ss_pred             HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHH
Q psy12573        126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQL  204 (315)
Q Consensus       126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l  204 (315)
                      +..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+...+    .+     |+..+  .++
T Consensus        90 ~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----g~~~a--~~l  158 (259)
T PRK06494         90 RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPR----QI-----GLKRA--MGM  158 (259)
T ss_pred             HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHH----Hc-----CHHHH--HHH
Confidence            34789999999999999999999999999999999999999999 99888776553322    22     77777  899


Q ss_pred             HhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHcC----c
Q psy12573        205 VATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---P---LGVVRSMTITGIPISAQDAYNAG----L  266 (315)
Q Consensus       205 ~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~G----l  266 (315)
                      +++++.+.+.++       .++|++....  .      ..+.+.+   +   ....|+++......+.+++++.-    .
T Consensus       159 ll~g~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~  231 (259)
T PRK06494        159 ILTGRRVTAREG-------LELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPA  231 (259)
T ss_pred             HHcCCcCCHHHH-------HHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            999999999999       7777775441  1      1122222   1   13556666655555555554332    2


Q ss_pred             cccccCCchHHHHHHHHHHHH
Q psy12573        267 ITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       267 v~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ...++.+ ++..+...+|.++
T Consensus       232 ~~~~~~~-~d~~eg~~af~~k  251 (259)
T PRK06494        232 VEARRAS-QDYIEGPKAFAEK  251 (259)
T ss_pred             HHHHhcC-ccHHHHHHHHHcc
Confidence            3445566 6777777777654

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=99.02  E-value=1.6e-10  Score=99.82  Aligned_cols=144  Identities=14%  Similarity=0.172  Sum_probs=100.6

Q ss_pred             HHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhH
Q psy12573        125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQ  203 (315)
Q Consensus       125 ~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~  203 (315)
                      .+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..++..+    .+     |+..+  .+
T Consensus        87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----G~~~a--~~  155 (255)
T PRK06563         87 VGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQ----AA-----GWGNA--MR  155 (255)
T ss_pred             HHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHH----Hh-----hHHHH--HH
Confidence            467789999999999999999999999999999999999999999 99887765543322    22     77777  89


Q ss_pred             HHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHc--Ccc
Q psy12573        204 LVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDAYNA--GLI  267 (315)
Q Consensus       204 l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~--Glv  267 (315)
                      ++++++.+.+.++       .++|++.... .       ..+.+.+   +   ....|+++......+..++.+.  -+.
T Consensus       156 l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~  228 (255)
T PRK06563        156 YLLTGDEFDAQEA-------LRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPEL  228 (255)
T ss_pred             HHHcCCCcCHHHH-------HHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            9999999999999       7778775441 1       1122222   1   1345666655444444444322  234


Q ss_pred             ccccCCchHHHHHHHHHHHH
Q psy12573        268 TRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ..++.+ ++..+...+|.++
T Consensus       229 ~~~~~~-~d~~eg~~af~~k  247 (255)
T PRK06563        229 RPLFTS-EDAKEGVQAFLER  247 (255)
T ss_pred             HHHhcC-chHHHHHHHHhcC
Confidence            445556 6666666666654

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.02  E-value=4.4e-09  Score=87.96  Aligned_cols=43  Identities=21%  Similarity=0.347  Sum_probs=38.3

Q ss_pred             HHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeC
Q psy12573        179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST  221 (315)
Q Consensus       179 ~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~  221 (315)
                      +..+..++||+|+.++|.|.++|..++++||.+++++.+.|+.
T Consensus        59 i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~  101 (208)
T cd07023          59 IRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS  101 (208)
T ss_pred             HHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence            3456677999999999999999999999999999999988854

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=99.02  E-value=5.5e-09  Score=100.46  Aligned_cols=91  Identities=25%  Similarity=0.214  Sum_probs=77.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      +.+++|+++++.|++.++++.+++.+.   .|..+. +..+++..++++..+++||+++|.+++.++..    |+.++|+
T Consensus       382 ~~~i~~~~~~~~l~~~l~~~~~vv~~~---~~~~~~-~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~----p~~~vv~  453 (569)
T PRK08327        382 RGPITPAYLSYCLGEVADEYDAIVTEY---PFVPRQ-ARLNKPGSYFGDGSAGGLGWALGAALGAKLAT----PDRLVIA  453 (569)
T ss_pred             CCCcCHHHHHHHHHHhcCccceEEecc---HHHHHh-cCccCCCCeeeCCCCCCCCcchHHHHHHhhcC----CCCeEEE
Confidence            468999999999999999988888663   356666 78888999999998999999999999999874    8899999


Q ss_pred             EEcCCCccccchh--hhHHhh
Q psy12573         86 VQGDSAFGFSGME--LETLAV  104 (315)
Q Consensus        86 l~g~g~~~~aG~D--l~~~~~  104 (315)
                      |+|||++++++.+  +.+..+
T Consensus       454 i~GDG~f~~~~~e~~l~ta~~  474 (569)
T PRK08327        454 TVGDGSFIFGVPEAAHWVAER  474 (569)
T ss_pred             EecCcceeecCcHHHHHHHHH
Confidence            9999999998766  455543

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=99.01  E-value=2e-10  Score=99.81  Aligned_cols=96  Identities=22%  Similarity=0.233  Sum_probs=80.0

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+..+|+|+|++|+|.+.|+|..+++.||++++.+.++|..|+.+ |+.+.++..+....    .+     |+.
T Consensus        92 ~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~----~v-----g~~  162 (266)
T PRK05981         92 YHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPR----LV-----GKA  162 (266)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHH----Hh-----HHH
Confidence            455677888999999999999999999999999999999999999999999 99887766543322    12     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       163 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~v  188 (266)
T PRK05981        163 RA--MELSLLGEKLPAETA-------LQWGLVNRV  188 (266)
T ss_pred             HH--HHHHHhCCCcCHHHH-------HHcCCceEe
Confidence            66  999999999999999       777777443

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=99.01  E-value=1e-10  Score=100.66  Aligned_cols=94  Identities=23%  Similarity=0.226  Sum_probs=77.5

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +.+..+...|+|+|+++||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+.    ++     ..-|+..+
T Consensus        86 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~----l~-----~~~G~~~a  156 (249)
T PRK05870         86 DGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWM----LQ-----RAVGPQVA  156 (249)
T ss_pred             HHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceee----HH-----hhhCHHHH
Confidence            3455678899999999999999999999999999999999999999999 98887654431    12     22288777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+++++++.+.+.++       .++|++...
T Consensus       157 --~~l~ltg~~~~a~eA-------~~~Glv~~v  180 (249)
T PRK05870        157 --RAALLFGMRFDAEAA-------VRHGLALMV  180 (249)
T ss_pred             --HHHHHhCCccCHHHH-------HHcCCHHHH
Confidence              999999999999999       777777443

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=99.01  E-value=3e-10  Score=97.68  Aligned_cols=148  Identities=18%  Similarity=0.260  Sum_probs=100.0

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      .+++..+..+|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+... ..    .++..+     |+..
T Consensus        79 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~~-~~----~l~~~v-----g~~~  148 (251)
T TIGR03189        79 HKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPAA-SC----LLPERM-----GRVA  148 (251)
T ss_pred             HHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCch-HH----HHHHHh-----CHHH
Confidence            34566788899999999999999999999999999999999999999999 8876532 22    122223     8777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch------HHH-Hhhhc---C---HHHHHHHHhcCCCCCHHHH---H
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP------AVA-LTRKV---P---LGVVRSMTITGIPISAQDA---Y  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~------~~~-l~~~~---g---~~~a~~~~~~g~~~~a~~a---~  262 (315)
                      +  .+|+++++.+.+.++       ..+|++....      ... +.+.+   +   ...+|+++......+.+++   .
T Consensus       149 a--~~l~ltg~~~~a~eA-------~~~Glv~~v~~~~~~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~  219 (251)
T TIGR03189       149 A--EDLLYSGRSIDGAEG-------ARIGLANAVAEDPENAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEV  219 (251)
T ss_pred             H--HHHHHcCCCCCHHHH-------HHCCCcceecCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence            7  999999999999999       6666664331      111 12221   1   1245666655443333332   2


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +......++.+ ++..+...+|.++
T Consensus       220 e~~~~~~~~~s-~d~~eg~~af~ek  243 (251)
T TIGR03189       220 EALYLEELMAT-HDAVEGLNAFLEK  243 (251)
T ss_pred             HHHHHHHHhCC-HhHHHHHHHHHhc
Confidence            22333445556 6677777766654

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07064 hypothetical protein; Provisional

Probab=99.01  E-value=3.3e-09  Score=101.67  Aligned_cols=166  Identities=22%  Similarity=0.258  Sum_probs=107.2

Q ss_pred             CCCHH-HHHHHHHhhCCCCceEEeC-CC-hhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          8 PLNYY-AAIHAVQVSIPDNCIIVGE-GA-NTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         8 ~~~~~-~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ++.++ .+++.|++.+|++.+++.| |. +..|..+. +..+.|+..+++.. ++|||++|.+++.+++.    ++.+||
T Consensus       354 ~~~~~~~~~~~l~~~l~~~~ii~~d~~~~~~~~~~~~-~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~----p~~~vv  427 (544)
T PRK07064        354 GLGPYAKLVDALRAALPRDGNWVRDVTISNSTWGNRL-LPIFEPRANVHALG-GGIGQGLAMAIGAALAG----PGRKTV  427 (544)
T ss_pred             ccCcHHHHHHHHHHhCCCCCEEEeCCccchHHHHHHh-cCccCCCceeccCC-CccccccchhhhhhhhC----cCCcEE
Confidence            45554 6999999999999999999 64 46777766 77777777777655 89999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhhhccCchhHHHHHH-HHHHHHHHHHc--CCCcEEEEEeeEEecccchhccccChhhhhhhc
Q psy12573         85 CVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS-TCSDLMLSILR--HPVPILAIISGVAAAAGCQLVATCDLAIATTAS  161 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~  161 (315)
                      +|+|||++++++++|.+..+...  +-.-..+| .-+..+.....  .....          .+..+ ...|+..+++. 
T Consensus       428 ~i~GDGsf~m~~~eL~Ta~~~~l--pv~ivV~NN~~yg~~~~~~~~~~~~~~----------~~~~~-~~~d~~~lA~a-  493 (544)
T PRK07064        428 GLVGDGGLMLNLGELATAVQENA--NMVIVLMNDGGYGVIRNIQDAQYGGRR----------YYVEL-HTPDFALLAAS-  493 (544)
T ss_pred             EEEcchHhhhhHHHHHHHHHhCC--CeEEEEEeCChhHHHHHHHHHhcCCcc----------ccccC-CCCCHHHHHHH-
Confidence            99999999999999998865221  10000000 00000110000  00000          01112 13678777776 


Q ss_pred             CCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        162 KFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       162 ~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                       |+....+ ....++...+......++|++..|.
T Consensus       494 -~G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV~  526 (544)
T PRK07064        494 -LGLPHWRVTSADDFEAVLREALAKEGPVLVEVD  526 (544)
T ss_pred             -CCCeEEEeCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence             5555544 5555666666666667778765543

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=98.99  E-value=6.1e-09  Score=84.87  Aligned_cols=81  Identities=22%  Similarity=0.383  Sum_probs=64.4

Q ss_pred             HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573         12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS   90 (315)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g   90 (315)
                      +.+++.|++.+| |.++++| |++..+...+   +..+.+.+.   +++||+++|.+++.+++.    + .++|+++|||
T Consensus         2 ~~~~~~l~~~~~-~~~vv~d~G~~~~~~~~~---~~~~~~~~~---~g~mG~~lp~AiGaala~----~-~~vv~i~GDG   69 (179)
T cd03372           2 RDAIKTLIADLK-DELVVSNIGFPSKELYAA---GDRPLNFYM---LGSMGLASSIGLGLALAQ----P-RKVIVIDGDG   69 (179)
T ss_pred             HHHHHHHHHhCC-CCeEEeCCCHhHHHHHHc---cCccccccc---ccchhhHHHHHHHHHhcC----C-CcEEEEECCc
Confidence            568899999999 9999999 7765554332   334566663   699999999999999984    4 7899999999


Q ss_pred             CccccchhhhHHhh
Q psy12573         91 AFGFSGMELETLAV  104 (315)
Q Consensus        91 ~~~~aG~Dl~~~~~  104 (315)
                      .++++.+++.++.+
T Consensus        70 ~f~m~~~el~ta~~   83 (179)
T cd03372          70 SLLMNLGALATIAA   83 (179)
T ss_pred             HHHhCHHHHHHHHH
Confidence            98888888777654

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=98.99  E-value=5.1e-10  Score=96.79  Aligned_cols=99  Identities=25%  Similarity=0.340  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      .+...+.++..+.+.+||+|++++|+++|+|.+++..||++++++.++|+.|+.+ |++|..+......+    -     
T Consensus        83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r----~-----  153 (257)
T COG1024          83 LMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPR----L-----  153 (257)
T ss_pred             HHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHH----h-----
Confidence            3445567888999999999999999999999999999999999999999999999 99996554443322    2     


Q ss_pred             ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573        194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCS  231 (315)
Q Consensus       194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~  231 (315)
                      .|+..+  .+|+++++.+.+.++       .++|++..
T Consensus       154 ~G~~~a--~~l~ltg~~~~a~eA-------~~~Glv~~  182 (257)
T COG1024         154 LGRGRA--KELLLTGEPISAAEA-------LELGLVDE  182 (257)
T ss_pred             cCHHHH--HHHHHcCCcCCHHHH-------HHcCCcCe
Confidence            277777  999999999999999       77777755

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=98.99  E-value=3.5e-10  Score=98.10  Aligned_cols=94  Identities=29%  Similarity=0.387  Sum_probs=78.7

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      .+++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+ .    +..+     |+..
T Consensus        89 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l----~~~v-----g~~~  158 (262)
T PRK05995         89 ADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-V----IRAM-----GERA  158 (262)
T ss_pred             HHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-H----HHHh-----CHHH
Confidence            45667788999999999999999999999999999999999999999999 9888765432 2    1122     8888


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+|+++++.+.+.++       .++|++...
T Consensus       159 a--~~l~l~g~~~~a~eA-------~~~Glv~~v  183 (262)
T PRK05995        159 A--RRYFLTAERFDAAEA-------LRLGLVHEV  183 (262)
T ss_pred             H--HHHHHcCCccCHHHH-------HHcCCCCee
Confidence            7  999999999999999       777877554

>KOG1679|consensus

Probab=98.99  E-value=1.2e-10  Score=93.43  Aligned_cols=100  Identities=26%  Similarity=0.413  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      +.+.++.++..+.+.|.|+|++|.|.+.|+|.++...||+++++++++++..+.+ .++|..++..    ++|..+    
T Consensus       109 fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQ----RLpR~v----  180 (291)
T KOG1679|consen  109 FVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQ----RLPRIV----  180 (291)
T ss_pred             HHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccc----hhHHHH----
Confidence            4456778888899999999999999999999999999999999999999999999 9999887764    344444    


Q ss_pred             ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                       |.+.+  .+|.+++....+.|+       ..+|++.++
T Consensus       181 -g~ala--KELIftarvl~g~eA-------~~lGlVnhv  209 (291)
T KOG1679|consen  181 -GVALA--KELIFTARVLNGAEA-------AKLGLVNHV  209 (291)
T ss_pred             -hHHHH--HhHhhhheeccchhH-------HhcchHHHH
Confidence             88888  999999999999999       777877443

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=98.99  E-value=2.6e-10  Score=98.48  Aligned_cols=148  Identities=18%  Similarity=0.220  Sum_probs=99.0

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+.....+.    ++..+     |+..+
T Consensus        85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~----l~~~v-----G~~~A  155 (256)
T TIGR03210        85 ELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTAL----LARVV-----GEKKA  155 (256)
T ss_pred             HHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHH----HHHHh-----CHHHH
Confidence            4556778899999999999999999999999999999999999999999 87644333322    22222     88777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCC-HHHHHHc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPIS-AQDAYNA  264 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~-a~~a~~~  264 (315)
                        .+++++++.+.+.++       .++|++.... .       ..+.+.+   +   ....|+++....... ..+..+.
T Consensus       156 --~~lll~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~  226 (256)
T TIGR03210       156 --REIWYLCRRYTAQEA-------LAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGMGM  226 (256)
T ss_pred             --HHHHHhCCCcCHHHH-------HHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHHHH
Confidence              999999999999999       7778875541 1       1122221   1   134566665442221 1122222


Q ss_pred             CccccccCCchHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ......+.+ ++..+...+|.++
T Consensus       227 ~~~~~~~~~-~d~~e~~~af~~k  248 (256)
T TIGR03210       227 YALKLYYDT-AESREGVKAFQEK  248 (256)
T ss_pred             HHHHHHccC-hhHHHHHHHHhcc
Confidence            233344556 6666676666654

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=98.99  E-value=5.3e-10  Score=97.21  Aligned_cols=95  Identities=21%  Similarity=0.303  Sum_probs=79.4

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      .+++..+..+++|+|++|||.+.|+|..++..||++++++.++|..|+.+ |+.+..+..+..    |..+     |+..
T Consensus        96 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~v-----G~~~  166 (268)
T PRK07327         96 RDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVW----PLLC-----GMAK  166 (268)
T ss_pred             HHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHH----HHHh-----CHHH
Confidence            45567788899999999999999999999999999999999999999999 998876654432    2222     8777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+++++++.+.+.++       .++|++...
T Consensus       167 a--~~l~ltg~~~~a~eA-------~~~Glv~~v  191 (268)
T PRK07327        167 A--KYYLLLCEPVSGEEA-------ERIGLVSLA  191 (268)
T ss_pred             H--HHHHHcCCccCHHHH-------HHcCCccee
Confidence            7  999999999999999       777777544

>PLN02888 enoyl-CoA hydratase

Probab=98.99  E-value=2.8e-10  Score=98.64  Aligned_cols=149  Identities=17%  Similarity=0.181  Sum_probs=100.5

Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      .+..+..+++|+|++|||.+.|+|..++..||++++.+.++|..|+.+ |+.+.++......+    -+     |+..+ 
T Consensus        91 ~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~v-----G~~~a-  160 (265)
T PLN02888         91 PVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSR----II-----GANRA-  160 (265)
T ss_pred             HHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHH----Hh-----CHHHH-
Confidence            344577899999999999999999999999999999999999999999 99887665443222    12     77777 


Q ss_pred             hhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhcC------HHHHHHHHhcCCCCCHHHHHHc--
Q psy12573        201 GCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKVP------LGVVRSMTITGIPISAQDAYNA--  264 (315)
Q Consensus       201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~g------~~~a~~~~~~g~~~~a~~a~~~--  264 (315)
                       .+++++++.+.+.++       .++|++....  .      ..+.+.+.      ....|+++......+.+++.+.  
T Consensus       161 -~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~  232 (265)
T PLN02888        161 -REVSLTAMPLTAETA-------ERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEK  232 (265)
T ss_pred             -HHHHHhCCccCHHHH-------HHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence             999999999999999       7778775441  1      11222211      1345666654433333333222  


Q ss_pred             Ccccccc--CCchHHHHHHHHHHHHHH
Q psy12573        265 GLITRVV--SSNEELESETKVLTSAIL  289 (315)
Q Consensus       265 Glv~~v~--~~~~~~~~~~~~~~~~l~  289 (315)
                      .....+.  .+ ++..+...+|.++-.
T Consensus       233 ~~~~~~~~~~~-~d~~e~~~af~ekr~  258 (265)
T PLN02888        233 ERAHDYYNGMT-KEQFQKMQEFIAGRS  258 (265)
T ss_pred             HHHHHHhccCC-HHHHHHHHHHHhcCC
Confidence            1222222  34 566666666666543

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=98.98  E-value=2.7e-10  Score=99.35  Aligned_cols=95  Identities=23%  Similarity=0.275  Sum_probs=79.2

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      .+.+..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+..    |..+     |+..
T Consensus        98 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l----~~~i-----g~~~  168 (272)
T PRK06210         98 QTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWIL----PRLV-----GHAN  168 (272)
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhh----Hhhh-----CHHH
Confidence            34556788899999999999999999999999999999999999999999 998877654422    2222     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+|+++++.+.+.++       .++|++...
T Consensus       169 a--~~l~ltg~~~~a~eA-------~~~Glv~~v  193 (272)
T PRK06210        169 A--LDLLLSARTFYAEEA-------LRLGLVNRV  193 (272)
T ss_pred             H--HHHHHcCCccCHHHH-------HHcCCccee
Confidence            7  999999999999999       777877554

>KOG1681|consensus

Probab=98.97  E-value=6.8e-11  Score=95.72  Aligned_cols=136  Identities=21%  Similarity=0.311  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcE
Q psy12573        111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPI  189 (315)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpv  189 (315)
                      ..+..+..+++.+..++++|||+|+++||.|.|+|..+...||+++.++.+-|...|+. ++..+.+.    +.++||.|
T Consensus       107 ~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT----L~RlpkvV  182 (292)
T KOG1681|consen  107 SLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT----LNRLPKVV  182 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh----HhhhhHHh
Confidence            35677788999999999999999999999999999999999999999999999999999 99888774    46788877


Q ss_pred             EEEEcc-ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch---------HHHHhhhcCH------HHHHHHHhcC
Q psy12573        190 LAIISG-VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP---------AVALTRKVPL------GVVRSMTITG  253 (315)
Q Consensus       190 Ia~v~G-~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~---------~~~l~~~~g~------~~a~~~~~~g  253 (315)
                           | +...  .++++++...-|.|+       ...|++...-         ...++..++.      .-.|+.++..
T Consensus       183 -----Gn~s~~--~elafTar~f~a~EA-------l~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ys  248 (292)
T KOG1681|consen  183 -----GNQSLA--RELAFTARKFSADEA-------LDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYS  248 (292)
T ss_pred             -----cchHHH--HHHHhhhhhcchhhh-------hhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHH
Confidence                 7 6666  999999999999999       6667664331         1123333332      3557777777


Q ss_pred             CCCCHHHHHHc
Q psy12573        254 IPISAQDAYNA  264 (315)
Q Consensus       254 ~~~~a~~a~~~  264 (315)
                      +..+.++.+.+
T Consensus       249 rehsv~~sLny  259 (292)
T KOG1681|consen  249 REHSVEESLNY  259 (292)
T ss_pred             hhhhhhhhHHH
Confidence            77777776543

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=98.97  E-value=6.8e-09  Score=99.02  Aligned_cols=89  Identities=20%  Similarity=0.312  Sum_probs=73.0

Q ss_pred             CCCCCHHHHHHHHHhhCCCC--ceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          6 SVPLNYYAAIHAVQVSIPDN--CIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      +.+++|+++++.|++.++++  .+++.| |++..|. .. +   ++..++++..+++|||++|.+++++++.    + .|
T Consensus       353 ~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~-~~-~---~~~~~~~~~~~g~mG~glpaaiGa~lA~----~-~r  422 (535)
T TIGR03394       353 AEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTA-MD-M---DDAGLMAPGYYAGMGFGVPAGIGAQCTS----G-KR  422 (535)
T ss_pred             CCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHH-Hh-c---CCCcEECcCccchhhhHHHHHHHHHhCC----C-CC
Confidence            45899999999999999865  468889 6654433 33 3   2578888889999999999999999984    3 46


Q ss_pred             EEEEEcCCCccccchhhhHHhh
Q psy12573         83 VVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        83 vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|+|||++.++++||.++.+
T Consensus       423 ~v~i~GDG~f~m~~~EL~Ta~r  444 (535)
T TIGR03394       423 ILTLVGDGAFQMTGWELGNCRR  444 (535)
T ss_pred             eEEEEeChHHHhHHHHHHHHHH
Confidence            7889999999999999999876

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=98.96  E-value=6.9e-10  Score=96.06  Aligned_cols=95  Identities=22%  Similarity=0.324  Sum_probs=79.2

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+...++|+|++|+|.+.|+|..++..||++++.+.++|+.|+.+ |+.+.++...+....    +     |+..
T Consensus        86 ~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~----v-----g~~~  156 (261)
T PRK11423         86 RQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTND----A-----GFHI  156 (261)
T ss_pred             HHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHH----h-----HHHH
Confidence            45667788999999999999999999999999999999999999999999 988766554433222    2     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+++++++.+.+.++       .++|++...
T Consensus       157 a--~~l~l~g~~~~a~eA-------~~~GLv~~v  181 (261)
T PRK11423        157 V--KEMFFTASPITAQRA-------LAVGILNHV  181 (261)
T ss_pred             H--HHHHHcCCCcCHHHH-------HHcCCcCcc
Confidence            7  999999999999999       777877554

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=98.95  E-value=5.8e-10  Score=98.33  Aligned_cols=96  Identities=22%  Similarity=0.287  Sum_probs=80.1

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +..++..+...|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+..    ++.+     |..
T Consensus       102 ~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~r~v-----G~~  172 (296)
T PRK08260        102 GGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWFL----PRLV-----GLQ  172 (296)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhhH----HHhh-----CHH
Confidence            345667788899999999999999999999999999999999999999999 998877655432    2222     877


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+|+++++.+.+.++       .++|++...
T Consensus       173 ~A--~~llltg~~~~a~eA-------~~~GLv~~v  198 (296)
T PRK08260        173 TA--LEWVYSGRVFDAQEA-------LDGGLVRSV  198 (296)
T ss_pred             HH--HHHHHcCCccCHHHH-------HHCCCceee
Confidence            77  999999999999999       777777544

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=98.95  E-value=5.3e-10  Score=97.60  Aligned_cols=97  Identities=25%  Similarity=0.342  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHH-HHHHHHHHHhcCCCcEEEEEcc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVS-TCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      .+++++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+ .++..+    .+|.-+     |
T Consensus        97 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~----~l~~~v-----G  167 (276)
T PRK05864         97 LLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSY----LLPRAI-----G  167 (276)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchhe----ehHhhh-----C
Confidence            3455667788999999999999999999999999999999999999999999 8875 555432    222222     8


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +..+  .+++++++.+.+.++       .++|++...
T Consensus       168 ~~~A--~~l~l~g~~~~a~eA-------~~~Glv~~v  195 (276)
T PRK05864        168 SSRA--FEIMLTGRDVDAEEA-------ERIGLVSRQ  195 (276)
T ss_pred             HHHH--HHHHHcCCccCHHHH-------HHcCCccee
Confidence            8777  999999999999999       777877554

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=98.95  E-value=5.6e-10  Score=95.90  Aligned_cols=89  Identities=18%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .++..+...++|+|++|+|.+.|+|..++..||++++++.++|..|+.+ |+.+..+..+..    ++.+     |. .+
T Consensus        80 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l----~~~~-----g~-~a  149 (248)
T PRK06072         80 PIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFL----LKLT-----GQ-RF  149 (248)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHH----HHHh-----hH-HH
Confidence            4556678899999999999999999999999999999999999999999 998876654422    2222     64 45


Q ss_pred             hhhHHHhhcCeeeeeCCceeeC
Q psy12573        200 AGCQLVATCDLAIATTASKFST  221 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~  221 (315)
                        .+++++++.+.+.++..+|+
T Consensus       150 --~~lll~g~~~~a~eA~~~Gl  169 (248)
T PRK06072        150 --YEILVLGGEFTAEEAERWGL  169 (248)
T ss_pred             --HHHHHhCCccCHHHHHHCCC
Confidence              89999999999999944433

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=98.95  E-value=5.6e-10  Score=96.12  Aligned_cols=94  Identities=26%  Similarity=0.379  Sum_probs=78.6

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+...+    .+     |+..+
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~----~~-----g~~~a  158 (251)
T PRK06023         88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPR----LM-----GHQRA  158 (251)
T ss_pred             HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHH----HH-----hHHHH
Confidence            4456778899999999999999999999999999999999999999999 99887765543322    12     77766


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+++++++.+.+.++       .++|++...
T Consensus       159 --~~l~l~g~~~~a~eA-------~~~Glv~~v  182 (251)
T PRK06023        159 --FALLALGEGFSAEAA-------QEAGLIWKI  182 (251)
T ss_pred             --HHHHHhCCCCCHHHH-------HHcCCccee
Confidence              999999999999999       777887554

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=98.95  E-value=2e-08  Score=83.91  Aligned_cols=101  Identities=20%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             HHhcC--CCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCc------------cCCCCCC---------------
Q psy12573        181 SILRH--PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGA------------RHGIFCS---------------  231 (315)
Q Consensus       181 ~l~~~--~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~------------~~Gl~~~---------------  231 (315)
                      .+.++  +||+++.++|.+.++|..|+++||.+++++.+.++...+            ++|+-+.               
T Consensus        54 ~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~  133 (207)
T TIGR00706        54 KLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTR  133 (207)
T ss_pred             HHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCC
Confidence            34444  499999999999999999999999999999987755222            2333210               


Q ss_pred             -c-hH--HHH---------------h--hhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHH
Q psy12573        232 -T-PA--VAL---------------T--RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV  283 (315)
Q Consensus       232 -~-~~--~~l---------------~--~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~  283 (315)
                       . ..  ..+               .  |.+.....++ +..++.+++++|++.||||++... +++.+...+
T Consensus       134 ~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~~  204 (207)
T TIGR00706       134 ELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTE-DDALKWLAE  204 (207)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCH-HHHHHHHHH
Confidence             0 00  000               1  1122223333 457889999999999999999876 676655443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=98.94  E-value=1.5e-08  Score=82.64  Aligned_cols=80  Identities=23%  Similarity=0.342  Sum_probs=63.9

Q ss_pred             HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573         12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD   89 (315)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~   89 (315)
                      +.+++.|++.+| |.+++.| |.+..   .. ++ ++.+++.++   +++||+++|.+++.+++.     +.+||+++||
T Consensus         2 ~~~~~~l~~~l~-d~iiv~d~G~~~~---~~-~~~~~~~~~~~~---~gsmG~~lpaAiGa~la~-----~~~Vv~i~GD   68 (181)
T TIGR03846         2 IDAIRAIASYLE-DELVVSNIGVPSK---EL-YAIRDRPLNFYM---LGSMGLASSIGLGLALAT-----DRTVIVIDGD   68 (181)
T ss_pred             HHHHHHHHHhCC-CCEEEecCCHhHH---HH-HhhhcCCCCeee---ccccccHHHHHHHHHHcC-----CCcEEEEEcc
Confidence            468899999998 9999999 65533   22 33 356777775   699999999999999974     5689999999


Q ss_pred             CCccccchhhhHHhh
Q psy12573         90 SAFGFSGMELETLAV  104 (315)
Q Consensus        90 g~~~~aG~Dl~~~~~  104 (315)
                      |++.++.+++.++.+
T Consensus        69 G~f~m~~~el~ta~~   83 (181)
T TIGR03846        69 GSLLMNLGVLPTIAA   83 (181)
T ss_pred             hHHHhhhhHHHHHHH
Confidence            998888888887653

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=98.94  E-value=5.5e-10  Score=97.34  Aligned_cols=93  Identities=24%  Similarity=0.281  Sum_probs=77.5

Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      ++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+......    ..+     |+..+ 
T Consensus        99 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~----~~v-----G~~~a-  168 (273)
T PRK07396         99 LQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLA----RIV-----GQKKA-  168 (273)
T ss_pred             HHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHH----HHh-----hHHHH-
Confidence            445678899999999999999999999999999999999999999999 8887665443221    112     87777 


Q ss_pred             hhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        201 GCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                       .+|+++++.+.+.++       .++|++...
T Consensus       169 -~~l~ltg~~~~A~eA-------~~~GLv~~v  192 (273)
T PRK07396        169 -REIWFLCRQYDAQEA-------LDMGLVNTV  192 (273)
T ss_pred             -HHHHHhCCCcCHHHH-------HHcCCcCee
Confidence             999999999999999       788888554

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=98.93  E-value=1.1e-09  Score=94.91  Aligned_cols=95  Identities=25%  Similarity=0.339  Sum_probs=78.0

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcch-h-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGY-N-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +.++..+...++|+|++|||.+.|+|..++..||++++.+.++|+.|+. . |+.+..+...+.    +.-+     |+.
T Consensus        92 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l----~~~v-----G~~  162 (262)
T PRK06144         92 DRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARL----VALL-----GAA  162 (262)
T ss_pred             HHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHH----HHHh-----CHH
Confidence            4556678889999999999999999999999999999999999999998 3 777766554432    2222     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       163 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~v  188 (262)
T PRK06144        163 RV--KDMLFTARLLEAEEA-------LAAGLVNEV  188 (262)
T ss_pred             HH--HHHHHcCCCcCHHHH-------HHcCCcCee
Confidence            77  999999999999999       788888554

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.92  E-value=1.6e-09  Score=106.32  Aligned_cols=96  Identities=26%  Similarity=0.311  Sum_probs=80.8

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      .++++..+.++++|+|++|||.|.|+|..++..||++++++.  ++|+.|+.+ ++.++++.+++    +|+.+     |
T Consensus        97 ~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~r----Lprli-----G  167 (737)
T TIGR02441        97 GQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQR----LPKLT-----G  167 (737)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhh----HHHhh-----C
Confidence            345677889999999999999999999999999999999886  479999999 99998877653    23333     8


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ...+  .+|+++++.+.+.++       .++|++...
T Consensus       168 ~~~A--~~l~ltG~~i~a~eA-------~~~GLVd~v  195 (737)
T TIGR02441       168 VPAA--LDMMLTGKKIRADRA-------KKMGIVDQL  195 (737)
T ss_pred             HHHH--HHHHHcCCcCCHHHH-------HHCCCCeEe
Confidence            7777  999999999999999       778887544

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=98.92  E-value=3.9e-10  Score=97.29  Aligned_cols=142  Identities=23%  Similarity=0.343  Sum_probs=98.8

Q ss_pred             HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      ..+++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+.    +     |+..+  .+|+
T Consensus        88 ~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----v-----g~~~a--~~l~  156 (254)
T PRK08252         88 RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRR----I-----PYHIA--MELA  156 (254)
T ss_pred             hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHH----c-----CHHHH--HHHH
Confidence            3589999999999999999999999999999999999999999 999887766543322    2     77777  9999


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCcccc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLITR  269 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv~~  269 (315)
                      ++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++..+...+.++++  +......
T Consensus       157 l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~  229 (254)
T PRK08252        157 LTGDMLTAERA-------HELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAP  229 (254)
T ss_pred             HcCCccCHHHH-------HHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            99999999999       6777774431        01122211   1   12456666554444444432  2233344


Q ss_pred             ccCCchHHHHHHHHHHHH
Q psy12573        270 VVSSNEELESETKVLTSA  287 (315)
Q Consensus       270 v~~~~~~~~~~~~~~~~~  287 (315)
                      .+.+ ++..+...+|.++
T Consensus       230 ~~~~-~~~~eg~~af~~k  246 (254)
T PRK08252        230 VFTS-ADAKEGATAFAEK  246 (254)
T ss_pred             HhcC-chHHHHHHHHhcC
Confidence            4555 6666776666654

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.91  E-value=1.1e-09  Score=94.41  Aligned_cols=93  Identities=26%  Similarity=0.305  Sum_probs=76.4

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .++..+...++|+|++|||.+.|+|..+++.||++++.+.++|+.|+.+ |+.+.... ....+.    +     |+..+
T Consensus        87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~~-~~l~~~----v-----g~~~a  156 (255)
T PRK07112         87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACVL-PFLIRR----I-----GTQKA  156 (255)
T ss_pred             HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchhh-HHHHHH----h-----CHHHH
Confidence            4566788899999999999999999999999999999999999999999 98876432 211111    2     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+++++++.+.+.++       .++|++...
T Consensus       157 --~~l~l~g~~~~a~eA-------~~~Glv~~v  180 (255)
T PRK07112        157 --HYMTLMTQPVTAQQA-------FSWGLVDAY  180 (255)
T ss_pred             --HHHHHhCCcccHHHH-------HHcCCCcee
Confidence              999999999999999       677777444

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=98.91  E-value=7.5e-10  Score=95.89  Aligned_cols=94  Identities=29%  Similarity=0.379  Sum_probs=77.2

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      .+++..+...|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+.. .+.         |...
T Consensus        91 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l-~~l---------~~~~  160 (260)
T PRK07827         91 TALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLL-PRL---------SPRA  160 (260)
T ss_pred             HHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhH-Hhh---------hHHH
Confidence            45667788999999999999999999999999999999999999999999 998877655422 111         2234


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+++++++.+.+.++       ..+|++...
T Consensus       161 a--~~l~l~g~~~~a~eA-------~~~Glv~~v  185 (260)
T PRK07827        161 A--ARYYLTGEKFGAAEA-------ARIGLVTAA  185 (260)
T ss_pred             H--HHHHHhCCccCHHHH-------HHcCCcccc
Confidence            4  889999999999999       777777554

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=98.91  E-value=2e-08  Score=81.00  Aligned_cols=86  Identities=35%  Similarity=0.561  Sum_probs=71.2

Q ss_pred             HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573         14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF   92 (315)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~   92 (315)
                      +++.|.+.++++.+++.| |.+..+..++ +..+.+...+....+++||+++|.+++.++..    ++.++|+++|||.+
T Consensus         2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~   76 (168)
T cd00568           2 VLAALRAALPEDAIVVNDAGNSAYWAYRY-LPLRRGRRFLTSTGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGF   76 (168)
T ss_pred             HHHHHHHHCCCCCEEEeCCcHHHHHHHHh-eeeCCCCcEEeCCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHH
Confidence            567888999999999999 7767777666 55667777777778899999999999999985    67899999999998


Q ss_pred             cccchhhhHHhh
Q psy12573         93 GFSGMELETLAV  104 (315)
Q Consensus        93 ~~aG~Dl~~~~~  104 (315)
                      ++...++.+...
T Consensus        77 ~~~~~~l~ta~~   88 (168)
T cd00568          77 MMTGQELATAVR   88 (168)
T ss_pred             hccHHHHHHHHH
Confidence            887777776643

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>PLN02921 naphthoate synthase

Probab=98.90  E-value=6e-10  Score=99.00  Aligned_cols=148  Identities=21%  Similarity=0.247  Sum_probs=100.1

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+..+++|+|++|+|.+.|+|..++..||++++++.++|+.++.+ |+++..+.....    +..+     |...+
T Consensus       152 ~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L----~rli-----G~~~A  222 (327)
T PLN02921        152 DLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIM----ARLV-----GQKKA  222 (327)
T ss_pred             HHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH----HHHh-----CHHHH
Confidence            3456778899999999999999999999999999999999999999998 888766544422    2222     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhcC------HHHHHHHHhcCCCCCHH-HHHHc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKVP------LGVVRSMTITGIPISAQ-DAYNA  264 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~g------~~~a~~~~~~g~~~~a~-~a~~~  264 (315)
                        .+|+++++.+.+.++       .++||+.... .       ..+.+.+.      ....|+++......... ...+.
T Consensus       223 --~ellltG~~~~A~eA-------~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~~~~~~~~~~  293 (327)
T PLN02921        223 --REMWFLARFYTASEA-------LKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDGHAGLQELGG  293 (327)
T ss_pred             --HHHHHcCCcCCHHHH-------HHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence              999999999999999       7888875441 1       12222221      13456666544322111 11111


Q ss_pred             CccccccCCchHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ......+.+ ++..+...+|.++
T Consensus       294 ~~~~~~~~s-~d~~egi~Af~ek  315 (327)
T PLN02921        294 NATLLFYGS-EEGNEGRTAYLEG  315 (327)
T ss_pred             HHHHHHhcC-HHHHHHHHHHhcc
Confidence            233344556 6777777777655

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=98.89  E-value=5.3e-09  Score=83.17  Aligned_cols=132  Identities=27%  Similarity=0.320  Sum_probs=92.5

Q ss_pred             CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchh
Q psy12573         32 GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPK  111 (315)
Q Consensus        32 g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~  111 (315)
                      |.+..|.+++ +..++|.+++++..+++||+++|.+++.+++    .|+.++|+++|||.++++..+|.++.+...    
T Consensus         3 G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~~~el~ta~~~~~----   73 (153)
T PF02775_consen    3 GCHTMWAAQY-LRVRRPRRFLTSGGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMSLQELATAVRYGL----   73 (153)
T ss_dssp             SHHHHHHHHH-SCCSSTTEEEESTTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHHGGGHHHHHHTTS----
T ss_pred             ChhHHHHHHh-cCcCCCCeEEcCCCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeeccchhHHHhhccc----
Confidence            7788999998 8889999999999999999999999999997    489999999999999999999988765211    


Q ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc----------cch------hccccChhhhhhhcCCCCcchh-hHH--
Q psy12573        112 LDEIFSTCSDLMLSILRHPVPILAIISGVAAAA----------GCQ------LVATCDLAIATTASKFSTPGYN-ILV--  172 (315)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~----------G~~------f~~g~D~~~~~~~~~~~~~~~~-~~~--  172 (315)
                                         ..++.++|--.+|.          +..      .....|+..+++.  ++.+..+ .-.  
T Consensus        74 -------------------~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a--~G~~~~~v~~~~~  132 (153)
T PF02775_consen   74 -------------------PVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEA--FGIKGARVTTPDP  132 (153)
T ss_dssp             -------------------SEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHH--TTSEEEEESCHSH
T ss_pred             -------------------eEEEEEEeCCcceEeccccccCcCcccccccccccccCCHHHHHHH--cCCcEEEEccCCH
Confidence                               11222222211110          010      1234577777666  4554433 333  


Q ss_pred             HHHHHHHHHHhcCCCcEEEEE
Q psy12573        173 STCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       173 ~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      .++...++.....++|++..|
T Consensus       133 ~el~~al~~a~~~~gp~vIeV  153 (153)
T PF02775_consen  133 EELEEALREALESGGPAVIEV  153 (153)
T ss_dssp             HHHHHHHHHHHHSSSEEEEEE
T ss_pred             HHHHHHHHHHHhCCCcEEEEc
Confidence            667777777778899987654

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.89  E-value=3.1e-08  Score=83.60  Aligned_cols=138  Identities=19%  Similarity=0.164  Sum_probs=94.0

Q ss_pred             HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573         66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG  145 (315)
Q Consensus        66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G  145 (315)
                      .++..+|+++..|+++++|+|+.+++.+ ++.++.++                                           
T Consensus        32 ~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------------------------------   67 (222)
T cd07018          32 RDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------------------------------   67 (222)
T ss_pred             HHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------------------------------
Confidence            8999999999999999999999988644 44443322                                           


Q ss_pred             chhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc
Q psy12573        146 CQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR  225 (315)
Q Consensus       146 ~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~  225 (315)
                                                    ...++.++..+|||||.++| +.++|..|+++||.+++.+.+.++..-+.
T Consensus        68 ------------------------------~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~  116 (222)
T cd07018          68 ------------------------------RQALERFRASGKPVIAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLS  116 (222)
T ss_pred             ------------------------------HHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccc
Confidence                                          12333445578999999998 77889999999999999999888774322


Q ss_pred             ------------CCCCCCc---------hHHH-----------------------Hh------hhcCHHHHHHHHhcCCC
Q psy12573        226 ------------HGIFCST---------PAVA-----------------------LT------RKVPLGVVRSMTITGIP  255 (315)
Q Consensus       226 ------------~Gl~~~~---------~~~~-----------------------l~------~~~g~~~a~~~~~~g~~  255 (315)
                                  +|+-+..         +..+                       +.      |.+.....++ +..|+.
T Consensus       117 ~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~-~~~~~~  195 (222)
T cd07018         117 AETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALEA-LIDLGG  195 (222)
T ss_pred             hhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH-HHHcCC
Confidence                        2221110         0000                       00      1111223333 345889


Q ss_pred             CCHHHHHHcCccccccCCchHHHHH
Q psy12573        256 ISAQDAYNAGLITRVVSSNEELESE  280 (315)
Q Consensus       256 ~~a~~a~~~Glv~~v~~~~~~~~~~  280 (315)
                      +++++|++.||||++... +++.+.
T Consensus       196 ~~~~~A~~~GLvD~i~~~-~e~~~~  219 (222)
T cd07018         196 DSAEEALEAGLVDGLAYR-DELEAR  219 (222)
T ss_pred             cHHHHHHHCCCCCcCCcH-HHHHHH
Confidence            999999999999999876 666554

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>PRK08788 enoyl-CoA hydratase; Validated

Probab=98.89  E-value=3.9e-09  Score=92.13  Aligned_cols=87  Identities=17%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHh
Q psy12573        128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVA  206 (315)
Q Consensus       128 ~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l  206 (315)
                      ..|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++......+    -+     |+..+  .+|++
T Consensus       119 ~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~----~v-----G~~~A--~elll  187 (287)
T PRK08788        119 GAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR----RV-----GPKLA--EELIL  187 (287)
T ss_pred             CCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH----Hh-----hHHHH--HHHHH
Confidence            689999999999999999999999999999999999999999 99887765543222    22     77777  99999


Q ss_pred             hcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        207 TCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       207 ~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +++.+.++++       .++|++...
T Consensus       188 tG~~l~A~eA-------~~~GLV~~v  206 (287)
T PRK08788        188 SGKLYTAEEL-------HDMGLVDVL  206 (287)
T ss_pred             cCCCCCHHHH-------HHCCCCcEe
Confidence            9999999999       777877543

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.86  E-value=1.4e-09  Score=93.46  Aligned_cols=94  Identities=16%  Similarity=0.244  Sum_probs=78.7

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+...|+|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+.    +     |+..+
T Consensus        85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----~-----g~~~a  155 (249)
T PRK07110         85 NLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEK----L-----GLALG  155 (249)
T ss_pred             HHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHH----h-----CHHHH
Confidence            3456678899999999999999999999999999999999999999999 998877655433222    2     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+++++++.+.+.++       .++|++...
T Consensus       156 --~~llltg~~~~a~eA-------~~~Glv~~v  179 (249)
T PRK07110        156 --QEMLLTARYYRGAEL-------KKRGVPFPV  179 (249)
T ss_pred             --HHHHHcCCccCHHHH-------HHcCCCeEE
Confidence              999999999999999       777877544

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=98.86  E-value=6.4e-10  Score=99.74  Aligned_cols=93  Identities=22%  Similarity=0.228  Sum_probs=77.2

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+..+++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |+.+.++..+.    ++     .+.| ..+
T Consensus        91 ~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~----L~-----r~~g-~~a  160 (342)
T PRK05617         91 RLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYF----LS-----RAPG-ALG  160 (342)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeE----eh-----hccc-HHH
Confidence            4556778899999999999999999999999999999999999999999 99887775542    22     2224 344


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+|+++++.+.+.++       .++|++..+
T Consensus       161 --~~llltG~~i~A~eA-------~~~GLv~~v  184 (342)
T PRK05617        161 --TYLALTGARISAADA-------LYAGLADHF  184 (342)
T ss_pred             --HHHHHcCCCCCHHHH-------HHcCCccee
Confidence              999999999999999       777877554

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=98.86  E-value=3.1e-10  Score=91.27  Aligned_cols=92  Identities=27%  Similarity=0.346  Sum_probs=74.7

Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHH-HHHHHHHHhcCCCcEEEEEccccch
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVST-CSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +-..|..+|||+|+.|+|++.|+|..+-.-||+.+++++++|+...-+ +.+.. ++..+.          +.+.|.-.+
T Consensus       108 lQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~yl----------ar~VGqKkA  177 (282)
T COG0447         108 LQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYL----------ARIVGQKKA  177 (282)
T ss_pred             HHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHH----------HHHhhhhhh
Confidence            334577899999999999999999999999999999999999988777 54443 333331          334488888


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .++.+.|....|.++       .++|++..+
T Consensus       178 --rEIwfLcR~Y~A~ea-------l~MGlVN~V  201 (282)
T COG0447         178 --REIWFLCRQYDAEEA-------LDMGLVNTV  201 (282)
T ss_pred             --HHhhhhhhhccHHHH-------HhcCceeee
Confidence              999999999999999       888988665

>PRK08321 naphthoate synthase; Validated

Probab=98.85  E-value=2e-09  Score=95.12  Aligned_cols=94  Identities=19%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh-hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++...+..+++|+|++|+|.+.|+|..+++.||+++++ +.++|+.++.+ ++.+..+.....    ++-+     |+..
T Consensus       126 ~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L----~r~v-----G~~~  196 (302)
T PRK08321        126 EVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYL----ARQV-----GQKF  196 (302)
T ss_pred             HHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHH----HHHh-----CHHH
Confidence            34456788999999999999999999999999999998 57899999998 887765544322    2222     8877


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+|+++++.+.+.++       .++|++...
T Consensus       197 A--~~l~ltG~~~~A~eA-------~~~GLv~~v  221 (302)
T PRK08321        197 A--REIFFLGRTYSAEEA-------HDMGAVNAV  221 (302)
T ss_pred             H--HHHHHcCCccCHHHH-------HHCCCceEe
Confidence            7  999999999999999       788887544

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.84  E-value=5.1e-09  Score=102.53  Aligned_cols=96  Identities=23%  Similarity=0.318  Sum_probs=82.6

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      .++++..+..+++|+|++|||.+.|+|.+++..||++++++.++|+.|+.+ |+.|.++.+++..+.    +     |..
T Consensus        91 ~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rl----i-----G~~  161 (714)
T TIGR02437        91 ANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRV----I-----GAD  161 (714)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHH----h-----CHH
Confidence            345667889999999999999999999999999999999999999999999 999988876644322    2     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  ++++++++.+.+.++       .++|++...
T Consensus       162 ~A--~~llltG~~~~A~eA-------~~~GLvd~v  187 (714)
T TIGR02437       162 NA--LEWIASGKENRAEDA-------LKVGAVDAV  187 (714)
T ss_pred             HH--HHHHHcCCcCCHHHH-------HHCCCCcEe
Confidence            76  999999999999999       788888654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK05869 enoyl-CoA hydratase; Validated

Probab=98.83  E-value=1.4e-09  Score=91.72  Aligned_cols=95  Identities=21%  Similarity=0.207  Sum_probs=79.4

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++.++.+.|+|+|++++|++.|+|..++..||++++.+.++|+.|+.+ ++.+..+......+..         |...
T Consensus        89 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i---------g~~~  159 (222)
T PRK05869         89 QQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA---------GPSR  159 (222)
T ss_pred             HHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh---------CHHH
Confidence            45667888999999999999999999999999999999999999999999 9888776544332222         6666


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+++++++.+.+.++       .++|++...
T Consensus       160 a--~~l~ltg~~~~a~eA-------~~~Glv~~v  184 (222)
T PRK05869        160 A--KELVFSGRFFDAEEA-------LALGLIDEM  184 (222)
T ss_pred             H--HHHHHcCCCcCHHHH-------HHCCCCCEe
Confidence            6  999999999999999       777887654

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=98.82  E-value=6.8e-08  Score=86.93  Aligned_cols=86  Identities=34%  Similarity=0.465  Sum_probs=67.7

Q ss_pred             CCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCC-----CcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          9 LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNL-----PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~-----~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      ++++++++.|.+.++++++|+.+ |........  +. ..     ++++++   +++||+++|.+++.++..    ++.+
T Consensus       172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~--~~-~~~~~~~~~~f~~---~GsMG~a~p~AlG~ala~----p~r~  241 (361)
T TIGR03297       172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYE--LR-DRIGQGHARDFLT---VGSMGHASQIALGLALAR----PDQR  241 (361)
T ss_pred             CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHH--hh-cccccCCCCceEe---echhhhHHHHHHHHHHHC----CCCC
Confidence            99999999999999999999998 653322111  21 12     466665   499999999999999985    7889


Q ss_pred             EEEEEcCCCccccchhhhHHhh
Q psy12573         83 VVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        83 vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      ||+|+|||.+.+..+++.+..+
T Consensus       242 Vv~i~GDGsflm~~~eL~t~~~  263 (361)
T TIGR03297       242 VVCLDGDGAALMHMGGLATIGT  263 (361)
T ss_pred             EEEEEChHHHHHHHHHHHHHHH
Confidence            9999999998888888777653

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=98.82  E-value=8e-09  Score=89.16  Aligned_cols=94  Identities=20%  Similarity=0.288  Sum_probs=79.3

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+.++..+...+    .+     |+..+
T Consensus        85 ~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r----~v-----G~~~a  155 (258)
T PRK06190         85 NPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQ----KV-----GIGRA  155 (258)
T ss_pred             HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHH----Hh-----CHHHH
Confidence            4456788899999999999999999999999999999999999999999 99887765543322    22     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+|+++++.+.+.++       .++|++...
T Consensus       156 --~~l~ltg~~~~a~eA-------~~~GLv~~v  179 (258)
T PRK06190        156 --RRMSLTGDFLDAADA-------LRAGLVTEV  179 (258)
T ss_pred             --HHHHHhCCccCHHHH-------HHcCCCeEe
Confidence              999999999999999       788887554

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=98.80  E-value=3.4e-09  Score=93.37  Aligned_cols=88  Identities=17%  Similarity=0.219  Sum_probs=71.5

Q ss_pred             HHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh--hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        123 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN--ILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       123 ~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      +..+..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+  +...  ...+  ..+    +     |...+ 
T Consensus       105 ~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~--~~~----v-----G~~~A-  170 (298)
T PRK12478        105 FMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW--LYR----L-----SLAKV-  170 (298)
T ss_pred             HHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH--HHH----h-----hHHHH-
Confidence            44577899999999999999999999999999999999999999987  3332  1121  111    2     77777 


Q ss_pred             hhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        201 GCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                       .+|+++++.+.+.++       .++|++..+
T Consensus       171 -~~llltg~~i~A~eA-------~~~GLV~~v  194 (298)
T PRK12478        171 -KWHSLTGRPLTGVQA-------AEAELINEA  194 (298)
T ss_pred             -HHHHHcCCccCHHHH-------HHcCCccee
Confidence             999999999999999       788887554

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=98.80  E-value=3.8e-09  Score=91.07  Aligned_cols=88  Identities=25%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      ...++|+|++|||.+.|+|..++..||++++.++++|+.|+.+ |+.+..+..+...+.    +     |+..+  .+++
T Consensus        90 ~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~----i-----G~~~a--~~ll  158 (254)
T PRK08259         90 MRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRL----I-----GHSRA--MDLI  158 (254)
T ss_pred             hcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHH----h-----CHHHH--HHHH
Confidence            3689999999999999999999999999999999999999999 888776655433221    2     77776  9999


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ++++.+.++++       .++|++...
T Consensus       159 l~g~~~~a~eA-------~~~Glv~~v  178 (254)
T PRK08259        159 LTGRPVDADEA-------LAIGLANRV  178 (254)
T ss_pred             HcCCccCHHHH-------HHcCCCCEe
Confidence            99999999999       788888654

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.79  E-value=5.9e-09  Score=102.28  Aligned_cols=96  Identities=21%  Similarity=0.287  Sum_probs=81.7

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+..+++|+|++|||.+.|+|..+++.||++++++.++|+.|+.+ |+.+..+..++..    .-+     |..
T Consensus        91 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~----rlv-----G~~  161 (715)
T PRK11730         91 ANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLP----RLI-----GAD  161 (715)
T ss_pred             HHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHH----Hhc-----CHH
Confidence            445667889999999999999999999999999999999999999999999 9999887765432    222     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+|+++++.+.+.++       .++|++...
T Consensus       162 ~A--~~llltG~~~~A~eA-------~~~GLv~~v  187 (715)
T PRK11730        162 NA--LEWIAAGKDVRAEDA-------LKVGAVDAV  187 (715)
T ss_pred             HH--HHHHHcCCcCCHHHH-------HHCCCCeEe
Confidence            77  999999999999999       777777544

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.74  E-value=1.3e-08  Score=99.85  Aligned_cols=95  Identities=23%  Similarity=0.359  Sum_probs=79.0

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      ++++..+.++++|+|++|||.|.|+|..++..||++++++.  ++|+.|+.+ |+.+.++...+.    +.-+     |.
T Consensus        91 ~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L----~r~v-----G~  161 (708)
T PRK11154         91 QQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRL----PRLI-----GV  161 (708)
T ss_pred             HHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHH----Hhhc-----CH
Confidence            45667788999999999999999999999999999999886  479999999 998887765433    2222     77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  ++|+++++.+.+.++       .++|++...
T Consensus       162 ~~A--~~llltG~~i~a~eA-------~~~GLv~~v  188 (708)
T PRK11154        162 STA--LDMILTGKQLRAKQA-------LKLGLVDDV  188 (708)
T ss_pred             HHH--HHHHHhCCcCCHHHH-------HHCCCCcEe
Confidence            777  999999999999999       777777543

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=98.73  E-value=9.8e-08  Score=81.23  Aligned_cols=92  Identities=18%  Similarity=0.216  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhhCC--CCceEEeC-CChhhHhhhhhhccCCCcccccCC--CCccccchHHHHHHHHHHhh-hcCCCCeEE
Q psy12573         11 YYAAIHAVQVSIP--DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAG--TFGTMGVGLGFALAAALYCN-HYAPGKRVV   84 (315)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~--~~~~mg~~~~~~l~~~l~~~-~~d~~~~vv   84 (315)
                      +..+++.|.+.++  +|.+++.| |.++.|..++ ...+.+.+.++..  ..++||+++|.++++++..- +.+++.+||
T Consensus        13 ~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv   91 (237)
T cd02018          13 EVTAVRVVLAALPAPEDTVIANSTGCSSVYASTA-PFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVV   91 (237)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEeCCCccceecccC-cCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEE
Confidence            3457888888898  99999999 9988888776 5555556666553  34999999999999998711 113788999


Q ss_pred             EEEcCCCcc-ccchhhhHHh
Q psy12573         85 CVQGDSAFG-FSGMELETLA  103 (315)
Q Consensus        85 vl~g~g~~~-~aG~Dl~~~~  103 (315)
                      +|+|||+++ +..+.+.+..
T Consensus        92 ~i~GDG~~~~~g~~~l~ta~  111 (237)
T cd02018          92 VIGGDGATYDIGFGALSHSL  111 (237)
T ss_pred             EEeCchHHHhccHHHHHHHH
Confidence            999999865 3555555543

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=98.72  E-value=6.2e-09  Score=92.06  Aligned_cols=95  Identities=23%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ..+.+++..+...+||+|++|||+|+|+|..++..||++++++.++|+.|+.+ +..+....+.+            .-|
T Consensus       114 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~~~~~~~~~------------~vG  181 (302)
T PRK08272        114 SRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAY------------RLG  181 (302)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccCChHHHHHH------------Hhh
Confidence            34456677888999999999999999999999999999999999999999987 44443221111            128


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +..+  .+|+++++.+.+.++       .++|++...
T Consensus       182 ~~~A--~~llltG~~i~a~eA-------~~~GLv~~v  209 (302)
T PRK08272        182 PQRA--KRLLFTGDCITGAQA-------AEWGLAVEA  209 (302)
T ss_pred             HHHH--HHHHHcCCccCHHHH-------HHcCCCcee
Confidence            8877  999999999999999       777887554

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=98.71  E-value=3.4e-09  Score=96.30  Aligned_cols=93  Identities=17%  Similarity=0.175  Sum_probs=77.7

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .++..+..+++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ |++++.+..+.. .++        .|. .+
T Consensus        96 ~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L-~rl--------~g~-~a  165 (379)
T PLN02874         96 WLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYIL-SRL--------PGH-LG  165 (379)
T ss_pred             HHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHH-Hhh--------hHH-HH
Confidence            3456788899999999999999999999999999999999999999999 999988766533 222        253 44


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+|+++++.+.+.++       .++|++...
T Consensus       166 --~~l~ltG~~i~a~eA-------~~~GLv~~v  189 (379)
T PLN02874        166 --EYLALTGARLNGKEM-------VACGLATHF  189 (379)
T ss_pred             --HHHHHcCCcccHHHH-------HHcCCccEE
Confidence              899999999999999       777877554

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=98.70  E-value=1.3e-07  Score=80.24  Aligned_cols=89  Identities=16%  Similarity=0.082  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhh---hccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573         10 NYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSL---LLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~---l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      .+--+++.|++.+|+|.+++.| |.+..|.....   ++.+.+...++..  ++||+++|.++++++..    |+.+||+
T Consensus        12 ~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~--gsmG~GlpaAiGa~~a~----p~r~VV~   85 (235)
T cd03376          12 GAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFENA--AAVASGIEAALKALGRG----KDITVVA   85 (235)
T ss_pred             ccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhcCH--HHHHHHHHHHHHHhccC----CCCeEEE
Confidence            3446788999999999999999 77655433221   4455555655543  79999999999987763    7889999


Q ss_pred             EEcCCCcc-ccchhhhHHhh
Q psy12573         86 VQGDSAFG-FSGMELETLAV  104 (315)
Q Consensus        86 l~g~g~~~-~aG~Dl~~~~~  104 (315)
                      |+|||.+| +..++|.++.+
T Consensus        86 i~GDG~~~~m~~~eL~ta~~  105 (235)
T cd03376          86 FAGDGGTADIGFQALSGAAE  105 (235)
T ss_pred             EEcCchHHhhHHHHHHHHHH
Confidence            99999953 67777777654

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.69  E-value=1.5e-07  Score=76.24  Aligned_cols=102  Identities=20%  Similarity=0.278  Sum_probs=74.9

Q ss_pred             HHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-----hHH------HHhhhcC--
Q psy12573        176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-----PAV------ALTRKVP--  242 (315)
Q Consensus       176 ~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-----~~~------~l~~~~g--  242 (315)
                      ...+..+..+++|+++.|+|.|.++|..++++||++++.+.+.++.++.-.+-....     ...      .++++-|  
T Consensus        48 ~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~  127 (178)
T cd07021          48 LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAAEKKGRD  127 (178)
T ss_pred             HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            446677889999999999999999999999999999999999998876543221100     011      1333333  


Q ss_pred             HHHHHHHHhcC-------------CCCCHHHHHHcCccccccCCchHH
Q psy12573        243 LGVVRSMTITG-------------IPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       243 ~~~a~~~~~~g-------------~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      ...+..|+...             -.++++||++.|+++.+.++.+++
T Consensus       128 ~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~l  175 (178)
T cd07021         128 PDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDEL  175 (178)
T ss_pred             HHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHH
Confidence            34666666654             269999999999999998874444

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.67  E-value=3.3e-08  Score=96.84  Aligned_cols=95  Identities=21%  Similarity=0.331  Sum_probs=78.9

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      ++++..+..+++|+|++|||.+.|+|..++..||+++++++  ++|+.|+.+ ++.+..+..++.    |.-+     |.
T Consensus        86 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L----~r~v-----G~  156 (699)
T TIGR02440        86 QVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRL----PRLI-----GV  156 (699)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHH----HHhc-----CH
Confidence            45666788999999999999999999999999999999875  689999999 999888766533    2222     77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  ++|+++++.+.+.++       .++|++...
T Consensus       157 ~~A--~~llltG~~~~a~eA-------~~~GLV~~v  183 (699)
T TIGR02440       157 STA--LDMILTGKQLRAKQA-------LKLGLVDDV  183 (699)
T ss_pred             HHH--HHHHHcCCcCCHHHH-------HhCCCCcEe
Confidence            777  999999999999999       777777443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=98.66  E-value=1.4e-08  Score=86.30  Aligned_cols=95  Identities=21%  Similarity=0.234  Sum_probs=75.3

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh-cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      .+++..+...++|+|+++||.+.|+|..++..||++++.+. ++|+.|+.+ |+.+..+.......++         |..
T Consensus        81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~---------g~~  151 (229)
T PRK06213         81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRL---------TPS  151 (229)
T ss_pred             HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHc---------CHH
Confidence            35567788999999999999999999999999999999988 889999999 8764443332222222         444


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       152 ~a--~~lll~g~~~~a~eA-------~~~Glv~~v  177 (229)
T PRK06213        152 AF--QRAVINAEMFDPEEA-------VAAGFLDEV  177 (229)
T ss_pred             HH--HHHHHcCcccCHHHH-------HHCCCceec
Confidence            44  789999999999999       788888654

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=98.64  E-value=5.8e-07  Score=74.18  Aligned_cols=78  Identities=22%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             HHHHHHHhh--CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC
Q psy12573         13 AAIHAVQVS--IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD   89 (315)
Q Consensus        13 ~~~~~~~~~--~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~   89 (315)
                      .+.+.+.+.  .|+|.++++| |.+ .|.++. ++.        +..+++||+++|.+++.++..    |+.+||+++||
T Consensus        13 ~~~~~~~~~~~~~~d~ii~~D~G~~-~~~~~~-~~~--------~~~~g~mG~glpaAiGa~la~----p~r~Vv~i~GD   78 (193)
T cd03375          13 ALAKALAELGIDPEKVVVVSGIGCS-SRLPYY-FNT--------YGFHTLHGRALAVATGVKLAN----PDLTVIVVSGD   78 (193)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCChh-ceehhh-ccc--------cchhhhhccHHHHHHHHHHhC----CCCeEEEEecc
Confidence            344455442  3678999999 664 454433 321        233489999999999999985    89999999999


Q ss_pred             CCcc-ccchhhhHHhh
Q psy12573         90 SAFG-FSGMELETLAV  104 (315)
Q Consensus        90 g~~~-~aG~Dl~~~~~  104 (315)
                      |++| +..+++.+..+
T Consensus        79 Gs~f~m~~~eL~ta~~   94 (193)
T cd03375          79 GDLAAIGGNHFIHAAR   94 (193)
T ss_pred             chHhhccHHHHHHHHH
Confidence            9954 67888888765

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=98.58  E-value=2.5e-08  Score=87.48  Aligned_cols=94  Identities=27%  Similarity=0.334  Sum_probs=76.1

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +.+++..+.++++|+|++|||.+.|+|..+++.||++++++.++|+.|+.+ |+. ... .+.    ++.-+     |+.
T Consensus       107 ~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~~~-~~~----l~~~i-----G~~  175 (288)
T PRK08290        107 YLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-GVE-YFA----HPWEL-----GPR  175 (288)
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-cch-HHH----HHHHh-----hHH
Confidence            345667788999999999999999999999999999999999999999999 874 222 211    11112     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+|+++++.+.+.++       .++|++...
T Consensus       176 ~A--~~llltG~~i~A~eA-------~~~GLV~~v  201 (288)
T PRK08290        176 KA--KELLFTGDRLTADEA-------HRLGMVNRV  201 (288)
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCccEe
Confidence            77  999999999999999       788888654

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=98.58  E-value=3e-08  Score=84.66  Aligned_cols=95  Identities=22%  Similarity=0.262  Sum_probs=72.9

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh-hhcCCCCcchh-hHH-HHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGYN-ILV-STCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~-~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      ++++..+.+.++|+|++|||.+.|+|..++..||++++. +.++|+.|+.+ |+. +.+. .......+         |.
T Consensus        84 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~-~~~l~~~v---------G~  153 (239)
T PLN02267         84 RPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYF-MALLRAKI---------GS  153 (239)
T ss_pred             HHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHH-HHHHHHHc---------Ch
Confidence            456677889999999999999999999999999999997 45689999999 885 6554 22221112         44


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+ -.++++++..+.+.++       .++|++...
T Consensus       154 ~~a-~~~llltG~~~~a~eA-------~~~Glv~~v  181 (239)
T PLN02267        154 PAA-RRDVLLRAAKLTAEEA-------VEMGIVDSA  181 (239)
T ss_pred             HHH-HHHHHHcCCcCCHHHH-------HHCCCccee
Confidence            433 0379999999999999       777877554

>COG3960 Glyoxylate carboligase [General function prediction only]

Probab=98.57  E-value=3.1e-07  Score=79.11  Aligned_cols=90  Identities=24%  Similarity=0.369  Sum_probs=80.1

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      ++.|++||+++++.++.++.|...++. |-++...++. |...+|+|+++-+.-+.+||.+|++|+...+    ||+..+
T Consensus       366 d~vp~kpqrvyeemn~~fgrd~~yvstiglsqia~aqf-lhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~v  440 (592)
T COG3960         366 DNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQF-LHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNV  440 (592)
T ss_pred             ccCCCCHHHHHHHHHhhcCCceeEEEeccHHHHhhhhh-hhhcCCcceeecCccCCcccccchhhceeec----CCCCce
Confidence            567999999999999999999988888 9888888888 9999999999999999999999999988765    699999


Q ss_pred             EEEEcCCCccccchhh
Q psy12573         84 VCVQGDSAFGFSGMEL   99 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl   99 (315)
                      |-|+||-.|.|---++
T Consensus       441 valsgdydfqfmieel  456 (592)
T COG3960         441 VAISGDYDFQFLIEEL  456 (592)
T ss_pred             EEeecCchHHHHHHHH
Confidence            9999998877754443

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=98.54  E-value=2.1e-06  Score=75.23  Aligned_cols=80  Identities=26%  Similarity=0.375  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhh--CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEE
Q psy12573         11 YYAAIHAVQVS--IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQ   87 (315)
Q Consensus        11 ~~~~~~~~~~~--~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~   87 (315)
                      ++.+++++++.  .|+|.++++| |.+. +...+ ++        .....++||+++|.+++.+++.    |+.+||+++
T Consensus        30 ~~~i~~al~~l~l~p~d~vivsdiG~s~-~~~~y-l~--------~~~~~g~mG~alpaAiGaklA~----pd~~VV~i~   95 (301)
T PRK05778         30 LNAIIQALAELGLDPDKVVVVSGIGCSS-KIPGY-FL--------SHGLHTLHGRAIAFATGAKLAN----PDLEVIVVG   95 (301)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCcHhh-hhhhh-cc--------cCccchhhccHHHHHHHHHHHC----CCCcEEEEe
Confidence            45778888886  4788889999 6644 33332 22        2333389999999999999985    899999999


Q ss_pred             cCCCcc-ccchhhhHHhh
Q psy12573         88 GDSAFG-FSGMELETLAV  104 (315)
Q Consensus        88 g~g~~~-~aG~Dl~~~~~  104 (315)
                      |||++| +.+++|.++.+
T Consensus        96 GDG~~~~mg~~eL~tA~r  113 (301)
T PRK05778         96 GDGDLASIGGGHFIHAGR  113 (301)
T ss_pred             CccHHHhccHHHHHHHHH
Confidence            999976 56788887765

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=98.48  E-value=6.5e-08  Score=80.09  Aligned_cols=99  Identities=27%  Similarity=0.357  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      ...+++++..+...++|+|++++|.+.|+|..++..||++++.+.+.|+.|+.. ++.+..+........+         
T Consensus        79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~---------  149 (195)
T cd06558          79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLV---------  149 (195)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHh---------
Confidence            445667788888999999999999999999999999999999999999999999 8886555444332222         


Q ss_pred             cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      |...+  .+++++++.+.+.++       .++|++...
T Consensus       150 g~~~a--~~~~l~g~~~~a~ea-------~~~Glv~~~  178 (195)
T cd06558         150 GPARA--RELLLTGRRISAEEA-------LELGLVDEV  178 (195)
T ss_pred             CHHHH--HHHHHcCCccCHHHH-------HHcCCCCee
Confidence            55555  899999999999999       788888655

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=98.44  E-value=3.8e-06  Score=72.84  Aligned_cols=83  Identities=22%  Similarity=0.186  Sum_probs=61.0

Q ss_pred             CCCCHHHHHHHHHhh--CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCC-CccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          7 VPLNYYAAIHAVQVS--IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGT-FGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~--~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~-~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      ..+.++.+++.|++.  .++|.++++| |.+.    ++ ..      +++... .++||+++|.+++.+++.    |+.+
T Consensus        24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~----~~-~~------~~~~~~~~~~~G~alPaAiGaklA~----Pdr~   88 (277)
T PRK09628         24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGCSG----RF-SS------YVNCNTVHTTHGRAVAYATGIKLAN----PDKH   88 (277)
T ss_pred             CchHHHHHHHHHHHhcCCCCCEEEEeCcCHHH----Hh-hc------cCCCCceeeccccHHHHHHHHHHHC----CCCe
Confidence            357789999999998  4888999999 7642    22 11      222223 369999999999999985    8999


Q ss_pred             EEEEEcCCCccc-cchhhhHHhh
Q psy12573         83 VVCVQGDSAFGF-SGMELETLAV  104 (315)
Q Consensus        83 vvvl~g~g~~~~-aG~Dl~~~~~  104 (315)
                      ||+++|||++++ .+.++.+..+
T Consensus        89 VV~i~GDG~f~~~g~~el~ta~r  111 (277)
T PRK09628         89 VIVVSGDGDGLAIGGNHTIHGCR  111 (277)
T ss_pred             EEEEECchHHHHhhHHHHHHHHH
Confidence            999999999654 3555555543

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=98.40  E-value=1.4e-06  Score=93.03  Aligned_cols=161  Identities=19%  Similarity=0.226  Sum_probs=106.0

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CCh----hhHhhhh----------hhccCCCccccc-CCCCccccc--hHHHHH
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GAN----TMDIGRS----------LLLNNLPRHRLD-AGTFGTMGV--GLGFAL   68 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~----~~~~~~~----------~l~~~~~~n~~~-~~~~~~mg~--~~~~~l   68 (315)
                      .++++.++++.|++.+|+|.+++.| |.+    .+|..+.          .++.+.|+..++ ...+|+||+  ++|.++
T Consensus       692 ~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lpaAI  771 (1655)
T PLN02980        692 SSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLSTAI  771 (1655)
T ss_pred             CCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHHHHH
Confidence            3689999999999999999999998 432    2444322          133466777775 677899999  599999


Q ss_pred             HHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec-----
Q psy12573         69 AAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA-----  143 (315)
Q Consensus        69 ~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g-----  143 (315)
                      +.++..     +.+||+|+|||++++.+++|.++.+...+.|                     .+|.++|--..|     
T Consensus       772 Gaala~-----~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lp---------------------i~iVV~NN~gggi~~~l  825 (1655)
T PLN02980        772 GFAVGC-----NKRVLCVVGDISFLHDTNGLSILSQRIARKP---------------------MTILVINNHGGAIFSLL  825 (1655)
T ss_pred             HHhhcC-----CCCEEEEEehHHHHhhhhHHHHhhcccCCCC---------------------EEEEEEeCCCcHhhhcC
Confidence            999873     5689999999999999999988764111111                     112222210000     


Q ss_pred             ----------ccchh--ccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        144 ----------AGCQL--VATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       144 ----------~G~~f--~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                                .+..|  ....|+..+++.  |+....+ ....++...+......++|++..|.-
T Consensus       826 ~~~~~~~~~~~~~~~~~~~~~df~~lA~a--~G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV~t  888 (1655)
T PLN02980        826 PIAKRTEPRVLNQYFYTSHDISIENLCLA--HGVRHLHVGTKSELEDALFTSQVEQMDCVVEVES  888 (1655)
T ss_pred             ccCCCCcchhHHHHhcCCCCCCHHHHHHH--cCCceeecCCHHHHHHHHHHhhccCCCEEEEEec
Confidence                      00001  123566666666  5666555 55566666666666678898888876

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=98.31  E-value=6.4e-06  Score=71.89  Aligned_cols=79  Identities=22%  Similarity=0.273  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhhC------CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCC-ccccchHHHHHHHHHHhhhcCCCCe
Q psy12573         11 YYAAIHAVQVSI------PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTF-GTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus        11 ~~~~~~~~~~~~------~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~-~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      +..+++.|.+.+      |+|.++++| |.+..+.           .+++...+ ++||+++|.+++.+++.    |+.+
T Consensus        25 ~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~-----------~~~~~~~~~g~mG~alpaAiGaklA~----Pd~~   89 (286)
T PRK11867         25 DGSILAALQRALAELGLDPENVAVVSGIGCSGRLP-----------GYINTYGFHTIHGRALAIATGLKLAN----PDLT   89 (286)
T ss_pred             CHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccC-----------ccccccchhhhhhcHHHHHHHHHHhC----CCCc
Confidence            345778888877      788999999 7654321           13455555 89999999999999985    8999


Q ss_pred             EEEEEcCCC-ccccchhhhHHhh
Q psy12573         83 VVCVQGDSA-FGFSGMELETLAV  104 (315)
Q Consensus        83 vvvl~g~g~-~~~aG~Dl~~~~~  104 (315)
                      ||+++|||. +.+.+.++.++.+
T Consensus        90 VV~i~GDG~~f~mg~~eL~tA~r  112 (286)
T PRK11867         90 VIVVTGDGDALAIGGNHFIHALR  112 (286)
T ss_pred             EEEEeCccHHHhCCHHHHHHHHH
Confidence            999999996 5557888888765

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.30  E-value=7.3e-06  Score=65.78  Aligned_cols=101  Identities=16%  Similarity=0.280  Sum_probs=77.3

Q ss_pred             HHHHHHhcCCCcEEEEEc---cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCC-----Cch----HH------HHh
Q psy12573        177 DLMLSILRHPVPILAIIS---GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC-----STP----AV------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~---G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~-----~~~----~~------~l~  238 (315)
                      ..+..+...++||++.+.   |.+..+|..++++||.+++.+.+.++......|..+     ...    ..      .++
T Consensus        49 ~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A  128 (172)
T cd07015          49 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLA  128 (172)
T ss_pred             HHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHH
Confidence            345566778999999999   999999999999999999999999988776433222     111    11      133


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +.-|  ...+.+++.....++++||+++|+++.+..+.+++
T Consensus       129 ~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~l  169 (172)
T cd07015         129 QESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINEL  169 (172)
T ss_pred             HHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHH
Confidence            3334  35778888888999999999999999999874444

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=98.27  E-value=9.2e-06  Score=70.40  Aligned_cols=163  Identities=14%  Similarity=0.171  Sum_probs=91.5

Q ss_pred             HHHHHHHhhC------CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573         13 AAIHAVQVSI------PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus        13 ~~~~~~~~~~------~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      -++..|.+.+      +++.+++.| |.+. |+..+ ++.        ..+.++||+++|.+++.+++.    |+.+||+
T Consensus        17 ~il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~-~~~--------~~~~~~~G~alp~A~GaklA~----Pd~~VV~   82 (279)
T PRK11866         17 GILEALRKALAELGIPPENVVVVSGIGCSS-NLPEF-LNT--------YGIHGIHGRVLPIATGVKWAN----PKLTVIG   82 (279)
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhh-ccC--------CCcccccccHHHHHHHHHHHC----CCCcEEE
Confidence            3455565555      678889999 7665 55444 332        234689999999999999984    8999999


Q ss_pred             EEcCCC-ccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHc-CCCcEE---EEEeeEEecccchhccccChhhhhhh
Q psy12573         86 VQGDSA-FGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILR-HPVPIL---AIISGVAAAAGCQLVATCDLAIATTA  160 (315)
Q Consensus        86 l~g~g~-~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i---~~v~G~~~g~G~~f~~g~D~~~~~~~  160 (315)
                      ++|||. +.+.+++|.+..+...+     ..+..++|..+.+.. ...|..   ....+.-  .|. ...-.|+..++..
T Consensus        83 i~GDG~~f~ig~~eL~tA~rrn~~-----i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~--~g~-~~~~~d~~~iA~a  154 (279)
T PRK11866         83 YGGDGDGYGIGLGHLPHAARRNVD-----ITYIVSNNQVYGLTTGQASPTTPRGVKTKTTP--DGN-IEEPFNPIALALA  154 (279)
T ss_pred             EECChHHHHccHHHHHHHHHHCcC-----cEEEEEEChhhhhhcccccCCCCCCceeeccC--CCC-CCCCCCHHHHHHH
Confidence            999995 55578888887652211     001112222222221 111110   0000000  000 0011266655554


Q ss_pred             cCCCCcchh----hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        161 SKFSTPGYN----ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       161 ~~~~~~~~~----~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                        ++.+.+.    ....++...+......+.|.+..+.-+|.-
T Consensus       155 --~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~~pC~~  195 (279)
T PRK11866        155 --AGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVLSPCVT  195 (279)
T ss_pred             --CCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence              2332111    223445556666667899999998888875

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=98.27  E-value=6.7e-06  Score=79.54  Aligned_cols=82  Identities=23%  Similarity=0.227  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc
Q psy12573         10 NYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG   88 (315)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g   88 (315)
                      .+-.+++.|++.+++|.+++.| |.+..|..       .|.+.++.  +++||+++|.+++.++..    ++.+||.++|
T Consensus       363 p~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~-------~p~~~~~~--~~~mG~~~~~AiGa~~a~----p~~~Vv~i~G  429 (595)
T TIGR03336       363 PHRATFYAMKKVADREAIFPSDIGCYTLGIQ-------PPLGTVDT--TLCMGASIGVASGLSKAG----EKQRIVAFIG  429 (595)
T ss_pred             CChHHHHHHHHhccCCcEEecCcchhhcccc-------CCccccce--eeccCchHHHHhhhhhcC----CCCCEEEEec
Confidence            3446789999999999999999 77655431       24455544  489999999999999874    7889999999


Q ss_pred             CCCcccc-chhhhHHhh
Q psy12573         89 DSAFGFS-GMELETLAV  104 (315)
Q Consensus        89 ~g~~~~a-G~Dl~~~~~  104 (315)
                      ||.++++ .++|.+..+
T Consensus       430 DG~f~~~g~~eL~tav~  446 (595)
T TIGR03336       430 DSTFFHTGIPGLINAVY  446 (595)
T ss_pred             cchhhhcCHHHHHHHHH
Confidence            9998887 588887654

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>KOG1184|consensus

Probab=98.21  E-value=1.6e-06  Score=78.79  Aligned_cols=94  Identities=21%  Similarity=0.280  Sum_probs=82.6

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      .+.++++..+++.++..+.++++++.+ |.+++.+.+  +..|...-++....|+++||++|+.|+.+++.    ++.|+
T Consensus       363 ~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~~--~~fP~g~~~~~q~~wgsIG~svga~lG~a~a~----~e~rv  436 (561)
T KOG1184|consen  363 PNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGINQ--TKFPKGCGYESQMQWGSIGWSVGATLGYAQAA----PEKRV  436 (561)
T ss_pred             CcchhhHHHHHHHHHhhcCCCceEEEecccceeccee--eccccccceEEEEEEeeccccchhhhhhhhcc----CCceE
Confidence            457799999999999999999998888 777655544  67899999999999999999999999999986    77899


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |++.|||.++...+++.++.+
T Consensus       437 ilfiGDGs~qlTvQeiStmir  457 (561)
T KOG1184|consen  437 ILFIGDGSFQLTVQEISTMIR  457 (561)
T ss_pred             EEEecCccceeeHHHHHHHHh
Confidence            999999999999999988764

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=98.14  E-value=2.7e-05  Score=67.79  Aligned_cols=68  Identities=24%  Similarity=0.383  Sum_probs=52.6

Q ss_pred             CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCc-cccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcc-ccchh
Q psy12573         22 IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFG-TMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG-FSGME   98 (315)
Q Consensus        22 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~-~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~-~aG~D   98 (315)
                      .|+|.++++| |.+..          .+ ..++..+++ .||+++|.+++.+++.    |+.+||+++|||.++ +.+.+
T Consensus        26 ~p~d~iivsdiGc~~~----------~~-~~l~~~~~~t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg~~e   90 (287)
T TIGR02177        26 DPEQVVVVSGIGCSAK----------TP-HYVNVNGFHGLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIGGNH   90 (287)
T ss_pred             CCCCEEEEECCCcccc----------cC-CeEecCCcccccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhccHHH
Confidence            3678889999 76531          11 455556654 5899999999999985    899999999999976 57888


Q ss_pred             hhHHhh
Q psy12573         99 LETLAV  104 (315)
Q Consensus        99 l~~~~~  104 (315)
                      |.+..+
T Consensus        91 L~tA~r   96 (287)
T TIGR02177        91 FVAAGR   96 (287)
T ss_pred             HHHHHH
Confidence            888765

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.14  E-value=0.00025  Score=60.69  Aligned_cols=153  Identities=14%  Similarity=0.177  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      ....+++....+...|+|..++.    .|..  .|.+    ++        ..+....+...+..+...+.|+|+.|.|.
T Consensus        85 rKa~R~~~lA~~~~lPvV~lvDt----pGa~--~g~~----aE--------~~G~~~~ia~~~~~~s~~~VP~IsVI~G~  146 (256)
T PRK12319         85 RKALRLMKQAEKFGRPVVTFINT----AGAY--PGVG----AE--------ERGQGEAIARNLMEMSDLKVPIIAIIIGE  146 (256)
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEC----CCcC--CCHh----HH--------hccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34455666677889999998886    2321  1211    11        11344444555566778899999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCC-CchHHH-HhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFC-STPAVA-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN  274 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~-~~~~~~-l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~  274 (315)
                      +.|||......||++++.+++.|       ++.+ +..+.. +...--...+.+.    ..+++.++.+.|+||++++..
T Consensus       147 ~~gGgA~a~~~~D~v~m~~~a~~-------~v~~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~ii~e~  215 (256)
T PRK12319        147 GGSGGALALAVADQVWMLENTMY-------AVLSPEGFASILWKDGSRATEAAEL----MKITAGELLEMGVVDKVIPEH  215 (256)
T ss_pred             cCcHHHHHhhcCCEEEEecCceE-------EEcCHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEecCCC
Confidence            99999998899999999998554       4443 322222 2211111222222    267999999999999999752


Q ss_pred             -hH-------HHHHHHHHHHHHHhCCHHHHHH
Q psy12573        275 -EE-------LESETKVLTSAILENSRSVLTL  298 (315)
Q Consensus       275 -~~-------~~~~~~~~~~~l~~~~~~a~~~  298 (315)
                       .+       +.+...+....+...++..+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  247 (256)
T PRK12319        216 GYFSSEIIDMIKKNLIEELAQLSQKPLEQLLE  247 (256)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence             11       2233344445555555554433

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=98.04  E-value=7.2e-05  Score=64.87  Aligned_cols=156  Identities=13%  Similarity=0.092  Sum_probs=88.5

Q ss_pred             hCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcccc-chh
Q psy12573         21 SIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GME   98 (315)
Q Consensus        21 ~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~a-G~D   98 (315)
                      .+|+|.+++.| |.+..+ ..+ ++.+        ...+.||+++|.+++..+..    |+.+||++.|||++++. +++
T Consensus        32 ~~p~d~ivvsdiG~~~~~-~~~-~~~~--------~~~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG~~e   97 (280)
T PRK11869         32 LKPRQVVIVSGIGQAAKM-PHY-INVN--------GFHTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEGGNH   97 (280)
T ss_pred             CCCCCEEEEeCchHhhhH-HHH-ccCC--------CCCcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCcHHH
Confidence            45778999999 765542 222 2211        33467999999999999984    88999999999997766 788


Q ss_pred             hhHHhhhccCchhHHHHHHHHHHHHHHHHc-CCCcEEE--EEeeEEecccchhccccChhhhhhhcCCCCcchh----hH
Q psy12573         99 LETLAVDKEGRPKLDEIFSTCSDLMLSILR-HPVPILA--IISGVAAAAGCQLVATCDLAIATTASKFSTPGYN----IL  171 (315)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~--~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~----~~  171 (315)
                      |.++.+...  +   ..+..++|..+.+.. ...|.-.  ... ...-.|. .....|+..++..  ++.+...    ..
T Consensus        98 L~tA~r~nl--~---i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~-~~~p~g~-~~~~~D~~~lA~a--~G~~~va~~~~~~  168 (280)
T PRK11869         98 LIHAIRRNP--D---ITVLVHNNQVYGLTKGQASPTTLKGFKT-PTQPWGV-FEEPFNPIALAIA--LDASFVARTFSGD  168 (280)
T ss_pred             HHHHHHhCc--C---cEEEEEECHHHhhhcceecCCCCCCccc-ccCCCCc-cCCCCCHHHHHHH--CCCCEEEEeCCCC
Confidence            888875221  1   111111222222111 0101000  000 0000111 2223577766665  3433332    23


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        172 VSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       172 ~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      ..++...+......+.|.+..|.-+|.-
T Consensus       169 ~~~l~~~i~~Al~~~Gp~lIeV~~pC~~  196 (280)
T PRK11869        169 IEETKEILKEAIKHKGLAIVDIFQPCVS  196 (280)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            4556666667777888998888888875

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.00  E-value=0.00061  Score=59.84  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      .......++....+...|+|..++.    .|.  ..|.+    ++        .++....+...+..+.....|+|+.|.
T Consensus       136 g~rKa~R~m~lA~~f~lPIVtlvDT----pGa--~~G~~----aE--------~~G~~~aia~~l~~~a~~~VP~IsVIi  197 (319)
T PRK05724        136 GYRKALRLMKMAEKFGLPIITFIDT----PGA--YPGIG----AE--------ERGQSEAIARNLREMARLKVPIICTVI  197 (319)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEeC----CCC--CCCHH----HH--------hccHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            3344556666677889999998875    222  11211    11        113444455566677899999999999


Q ss_pred             cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573        195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN  274 (315)
Q Consensus       195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~  274 (315)
                      |.+.|||......||++++.+.+.       +++.+..+...+..+- ...+.+... ...+++.++.+.|+|+++++.+
T Consensus       198 Geg~sGGAla~~~aD~v~m~~~A~-------~svisPEg~a~Il~~~-~~~a~~aae-~~~ita~~l~~~g~iD~II~Ep  268 (319)
T PRK05724        198 GEGGSGGALAIGVGDRVLMLEYST-------YSVISPEGCASILWKD-ASKAPEAAE-AMKITAQDLKELGIIDEIIPEP  268 (319)
T ss_pred             CCccHHHHHHHhccCeeeeecCce-------EeecCHHHHHHHHhcC-chhHHHHHH-HcCCCHHHHHHCCCceEeccCC
Confidence            999888887666799999998844       4555433332222111 122333332 4568999999999999999742


Q ss_pred             -----hHH-------HHHHHHHHHHHHhCCHHHHHHH
Q psy12573        275 -----EEL-------ESETKVLTSAILENSRSVLTLG  299 (315)
Q Consensus       275 -----~~~-------~~~~~~~~~~l~~~~~~a~~~~  299 (315)
                           .+.       .+...+-...+.+.++..+...
T Consensus       269 ~gga~~~~~~~~~~l~~~i~~~l~~l~~~~~~~l~~~  305 (319)
T PRK05724        269 LGGAHRDPEAAAAALKEALLEALAELKGLSPEELLER  305 (319)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence                 122       2333344455556666554443

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]

Probab=97.99  E-value=6.5e-05  Score=67.81  Aligned_cols=92  Identities=24%  Similarity=0.259  Sum_probs=78.7

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      ...+..+++-.+++..+++++|+.. |+-....-++ ++...|.++--...|.+|||++...|+..++.    |+..|++
T Consensus       393 t~ptq~~vigav~~~~~~~svvvcAAGsLPGdLhkL-W~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~----pdreV~v  467 (617)
T COG3962         393 TLPTQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKL-WRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAE----PDREVYV  467 (617)
T ss_pred             cCccchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHH-hccCCCCceeeeecccccccccccccccccCC----CCCeEEE
Confidence            4456678999999999999999887 8877778887 88888889988889999999999999999664    7889999


Q ss_pred             EEcCCCccccchhhhHHh
Q psy12573         86 VQGDSAFGFSGMELETLA  103 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~  103 (315)
                      +.|||++.+.-.+|.+..
T Consensus       468 mVGDGSymMlnSEL~Tsv  485 (617)
T COG3962         468 MVGDGSYMMLNSELATSV  485 (617)
T ss_pred             EEcccchhhhhHHHHHHH
Confidence            999999888777776654

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=97.96  E-value=0.00052  Score=61.84  Aligned_cols=156  Identities=12%  Similarity=0.152  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      .....+++....+...|+|..++.    .|.  ..|.+-            +.++....+...+..+..+..|+|+.|.|
T Consensus       207 yRKAlR~mklAekf~lPIVtLVDT----pGA--~pG~~A------------Ee~Gqa~aIAr~l~ams~l~VPiISVViG  268 (431)
T PLN03230        207 YRKALRFMRHAEKFGFPILTFVDT----PGA--YAGIKA------------EELGQGEAIAFNLREMFGLRVPIIATVIG  268 (431)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeC----CCc--CCCHHH------------HHHhHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            334455666677889999998875    222  122111            11133344445566778899999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCC-CCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      .+.+||......||++++.+.+++       ++. |+..+ ..+....-...+.+    .-.+++.++++.|+||++++.
T Consensus       269 eGgSGGAlalg~aD~VlMle~A~y-------sVisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~E  337 (431)
T PLN03230        269 EGGSGGALAIGCGNRMLMMENAVY-------YVASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVPE  337 (431)
T ss_pred             CCCcHHHHHhhcCCEEEEecCCEE-------EecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence            997777666667999999998544       444 33322 22222211222223    237899999999999999975


Q ss_pred             c-----hH-------HHHHHHHHHHHHHhCCHHHHHHHH
Q psy12573        274 N-----EE-------LESETKVLTSAILENSRSVLTLGK  300 (315)
Q Consensus       274 ~-----~~-------~~~~~~~~~~~l~~~~~~a~~~~k  300 (315)
                      +     .+       +.+...+....|...++..+...+
T Consensus       338 p~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~~~R  376 (431)
T PLN03230        338 PLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQDR  376 (431)
T ss_pred             CCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            2     11       223344445566677766655443

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.94  E-value=0.00081  Score=59.05  Aligned_cols=156  Identities=16%  Similarity=0.155  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      .....+++....+...|+|..++.    .|..  .|    .-++        .++....+...+..+.....|+|+.|.|
T Consensus       140 ~rKa~Rlm~lA~~f~lPIItlvDT----pGA~--~G----~~AE--------~~G~~~aiar~l~~~a~~~VP~IsVViG  201 (322)
T CHL00198        140 YRKALRLMKHANKFGLPILTFIDT----PGAW--AG----VKAE--------KLGQGEAIAVNLREMFSFEVPIICTIIG  201 (322)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeC----CCcC--cC----HHHH--------HHhHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            344556666777889999998876    2321  12    1111        1133333444555567889999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCC-CCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN  274 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~  274 (315)
                      .+.|||......||++++.+.++|       ++. |+..+..+-+  -..++.+. -..-.+++++.++.|+|+.+++.+
T Consensus       202 eggsGGAlal~~aD~V~m~e~a~~-------sVisPEg~a~Il~~--d~~~a~~a-A~~~~ita~dL~~~giiD~ii~Ep  271 (322)
T CHL00198        202 EGGSGGALGIGIGDSIMMLEYAVY-------TVATPEACAAILWK--DSKKSLDA-AEALKITSEDLKVLGIIDEIIPEP  271 (322)
T ss_pred             cccHHHHHhhhcCCeEEEeCCeEE-------EecCHHHHHHHHhc--chhhHHHH-HHHcCCCHHHHHhCCCCeEeccCC
Confidence            998888777777999999999555       444 3332222211  11222232 223578999999999999999742


Q ss_pred             -----hH-------HHHHHHHHHHHHHhCCHHHHHHH
Q psy12573        275 -----EE-------LESETKVLTSAILENSRSVLTLG  299 (315)
Q Consensus       275 -----~~-------~~~~~~~~~~~l~~~~~~a~~~~  299 (315)
                           .+       +.+...+....+...++..+...
T Consensus       272 ~ggah~~~~~~~~~l~~~~~~~l~~l~~~~~~~l~~~  308 (322)
T CHL00198        272 IGGAQADPASASKILKKKLIRQLDFLKILSPSELKAH  308 (322)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence                 11       22333444555666666554443

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.94  E-value=0.00075  Score=59.24  Aligned_cols=156  Identities=16%  Similarity=0.194  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      .....+++....+...|+|..++.    .|  +..|.+    .        +..+....+...+..+.....|+|+.|.|
T Consensus       137 ~rKa~R~m~lA~~f~iPvVtlvDT----pG--a~~g~~----a--------E~~G~~~aia~~l~a~s~~~VP~IsVViG  198 (316)
T TIGR00513       137 YRKALRLMKMAERFKMPIITFIDT----PG--AYPGIG----A--------EERGQSEAIARNLREMARLGVPVICTVIG  198 (316)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEEC----CC--CCCCHH----H--------HHHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            344556666677889999998886    23  211211    1        11133344445566677889999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc-
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN-  274 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~-  274 (315)
                      .+.+||......||++++.+.+.+       ++.+..+...+..+- ...+.+... -..+++.++.+.|+||.+++.+ 
T Consensus       199 eggsGGAla~~~aD~v~m~~~a~~-------sVisPEg~a~Il~kd-~~~a~~aae-~~~~ta~~l~~~G~iD~II~ep~  269 (316)
T TIGR00513       199 EGGSGGALAIGVGDKVNMLEYSTY-------SVISPEGCAAILWKD-ASKAPKAAE-AMKITAPDLKELGLIDSIIPEPL  269 (316)
T ss_pred             ccccHHHhhhccCCEEEEecCceE-------EecCHHHHHHHhccc-hhhHHHHHH-HccCCHHHHHHCCCCeEeccCCC
Confidence            998888776667999999998444       555333322211111 111222221 2567899999999999999742 


Q ss_pred             ----hH-------HHHHHHHHHHHHHhCCHHHHHH
Q psy12573        275 ----EE-------LESETKVLTSAILENSRSVLTL  298 (315)
Q Consensus       275 ----~~-------~~~~~~~~~~~l~~~~~~a~~~  298 (315)
                          .+       +.+...+....+.+.++..+..
T Consensus       270 ~ga~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~  304 (316)
T TIGR00513       270 GGAHRNPLAAAASLKEQLLADLATLDQLSTEELKN  304 (316)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                11       2233344455556666655443

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=97.86  E-value=2.4e-05  Score=64.22  Aligned_cols=129  Identities=17%  Similarity=0.161  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhhcCCCCeEEEEE--cCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEe---e
Q psy12573         65 GFALAAALYCNHYAPGKRVVCVQ--GDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIIS---G  139 (315)
Q Consensus        65 ~~~l~~~l~~~~~d~~~~vvvl~--g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~---G  139 (315)
                      ...+..+|..++.++ .+.|+|.  +-|      +++...                 ..++..+..+++|+|++++   |
T Consensus        15 ~~~l~~~l~~a~~~~-~~~vvl~InSpG------G~v~~~-----------------~~i~~~l~~~~kPvia~v~~~~G   70 (187)
T cd07020          15 ADYLERAIDQAEEGG-ADALIIELDTPG------GLLDST-----------------REIVQAILASPVPVVVYVYPSGA   70 (187)
T ss_pred             HHHHHHHHHHHHhCC-CCEEEEEEECCC------CCHHHH-----------------HHHHHHHHhCCCCEEEEEecCCC
Confidence            377888888887665 5666653  333      333222                 1234455678999999999   9


Q ss_pred             EEecccchhccccChhhhhhhcCCCCcchh-hHHHH-------------HHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        140 VAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVST-------------CSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       140 ~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      .+.|+|..+.++||++++.+.++|+..+.. .....             .......+        +...|....--.+++
T Consensus        71 ~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~G~~~~~a~~~l  142 (187)
T cd07020          71 RAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSL--------AELRGRNAEWAEKAV  142 (187)
T ss_pred             CchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHH--------HHHcCCCHHHHHHHH
Confidence            999999999999999999999888775554 21110             01111111        112255322226788


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +.+.+..+.++       .++|++...
T Consensus       143 ~~g~~~~a~eA-------~~~Glvd~v  162 (187)
T cd07020         143 RESLSLTAEEA-------LKLGVIDLI  162 (187)
T ss_pred             HcCCeecHHHH-------HHcCCcccc
Confidence            89999999999       888888665

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=97.82  E-value=0.00095  Score=64.11  Aligned_cols=156  Identities=12%  Similarity=0.128  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      .....+++....+...|+|..++.    .|...  |....            ..+....+...+..+.....|+|+.|.|
T Consensus       228 yRKAlRlmkLAekfgLPIVtLVDT----pGA~p--G~~AE------------e~Gq~~aIArnl~amasl~VP~ISVViG  289 (762)
T PLN03229        228 YRKALRMMYYADHHGFPIVTFIDT----PGAYA--DLKSE------------ELGQGEAIAHNLRTMFGLKVPIVSIVIG  289 (762)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEEC----CCcCC--CchhH------------HHhHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            334455666677889999998886    23221  11111            1133334445566667889999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCC-CCchHH-HHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAV-ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~~-~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      .+.|||......||++++.+.++|       ++. |.+.+. .+...--...|.    ..-.+++++.++.|+|+.+++.
T Consensus       290 eggSGGAlA~g~aD~VlMle~A~~-------sVisPEgaAsILwkd~~~A~eAA----e~lkiTa~dL~~lGiiD~IIpE  358 (762)
T PLN03229        290 EGGSGGALAIGCANKLLMLENAVF-------YVASPEACAAILWKSAKAAPKAA----EKLRITAQELCRLQIADGIIPE  358 (762)
T ss_pred             CcchHHHHHhhcCCEEEEecCCeE-------EecCHHHHHHHHhcCcccHHHHH----HHcCCCHHHHHhCCCCeeeccC
Confidence            999889888888999999988544       444 333222 222211112222    2347899999999999999975


Q ss_pred             c-----hH-------HHHHHHHHHHHHHhCCHHHHHHHH
Q psy12573        274 N-----EE-------LESETKVLTSAILENSRSVLTLGK  300 (315)
Q Consensus       274 ~-----~~-------~~~~~~~~~~~l~~~~~~a~~~~k  300 (315)
                      +     .+       +.+........+...++..+...+
T Consensus       359 p~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R  397 (762)
T PLN03229        359 PLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHR  397 (762)
T ss_pred             CCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            2     11       223334445556666766655444

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=97.81  E-value=2.6e-05  Score=72.73  Aligned_cols=66  Identities=17%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccC-CCcccccCCCCccccchHHHHHHHHH
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNN-LPRHRLDAGTFGTMGVGLGFALAAAL   72 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~-~~~n~~~~~~~~~mg~~~~~~l~~~l   72 (315)
                      +.|++|+++++.|++.+|+|.+|+.| |.+..|..++ +... +++.++++..+++||+++|.++++++
T Consensus       364 ~~~i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~-~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~  431 (432)
T TIGR00173       364 EEPLSELSLARALSQLLPEGAALFVGNSMPIRDLDTF-AQPPDKPIRVFANRGASGIDGTLSTALGIAL  431 (432)
T ss_pred             cCCccHHHHHHHHHHhCCCCCeEEEECCHHHHHHHhc-CCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence            45799999999999999999999999 7777887776 5555 68999999999999999999999875

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

>KOG1682|consensus

Probab=97.79  E-value=9.7e-06  Score=65.04  Aligned_cols=99  Identities=38%  Similarity=0.593  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      .|+...+.+..|.+.|.|+|+-+||++...|+.+.+.||+.++..+++|..|... +++-.-.+.. ..+..|.++    
T Consensus       110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRavpRkv----  184 (287)
T KOG1682|consen  110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAVPRKV----  184 (287)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-HhhhcchhH----
Confidence            3556677888899999999999999999999999999999999999999999988 7654332221 233445544    


Q ss_pred             ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                           +  ++|.+++..+.++++       ..-|++..+
T Consensus       185 -----a--~~ML~Tg~Pi~~eeA-------l~sGlvskv  209 (287)
T KOG1682|consen  185 -----A--AYMLMTGLPITGEEA-------LISGLVSKV  209 (287)
T ss_pred             -----H--HHHHHhCCCCchHHH-------HHhhhhhhc
Confidence                 3  999999999999998       777777443

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=97.76  E-value=0.00026  Score=56.66  Aligned_cols=94  Identities=15%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCch-HH---------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCSTP-AV---------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~~-~~---------------~l~  238 (315)
                      ..+..+..+++|+++.+.|.|.++|..++++||  .+++.+.+++.+....-+...... ..               .+.
T Consensus        49 ~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a  128 (162)
T cd07013          49 AIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYA  128 (162)
T ss_pred             HHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667788899999999999999999999999  588888888876543322211110 00               111


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRV  270 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v  270 (315)
                      +.-|  ....++.+..+.-++++||+++|++|++
T Consensus       129 ~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         129 HKTGQSEEELHADLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence            1122  3456666777777899999999999974

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK10949 protease 4; Provisional

Probab=97.74  E-value=0.00056  Score=66.03  Aligned_cols=105  Identities=16%  Similarity=0.250  Sum_probs=68.6

Q ss_pred             HHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCC------------ccCCCCCCc-------------
Q psy12573        178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPG------------ARHGIFCST-------------  232 (315)
Q Consensus       178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe------------~~~Gl~~~~-------------  232 (315)
                      .+..++...|||++.+.+.+.-||..++.+||.++|.+.+..|--.            -++|+-.+.             
T Consensus       388 ~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~  467 (618)
T PRK10949        388 ELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITK  467 (618)
T ss_pred             HHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccC
Confidence            3444566789999999999999999999999999999976543311            123332111             


Q ss_pred             ---hH------------H-HHh------hhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHH
Q psy12573        233 ---PA------------V-ALT------RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL  284 (315)
Q Consensus       233 ---~~------------~-~l~------~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~  284 (315)
                         ..            + .+.      |.+...... -+..|+.+++++|++.||||++-.- ++..+.+.++
T Consensus       468 ~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~-~ia~Grv~tg~~A~~~GLVD~lG~~-~~ai~~a~~~  539 (618)
T PRK10949        468 ALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQID-KIAQGHVWTGQDAKANGLVDSLGDF-DDAVAKAAEL  539 (618)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH-HHhcCCcccHHHHHHcCCCccCCCH-HHHHHHHHHH
Confidence               00            0 000      111122222 3567899999999999999998665 6665555554

>KOG0016|consensus

Probab=97.68  E-value=3.6e-05  Score=64.36  Aligned_cols=94  Identities=21%  Similarity=0.340  Sum_probs=80.9

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ......+...+||.|+.|||.+.|-|..+-.-||+.++.+.+.|..|... |..|+....+    .+|+.+     |.+.
T Consensus        97 ~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~----t~p~im-----G~~~  167 (266)
T KOG0016|consen   97 SCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSV----TLPKIM-----GSAS  167 (266)
T ss_pred             HHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceee----eehHhh-----chhh
Confidence            34566788999999999999999999999999999999999999999999 9888877654    566666     9999


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCS  231 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~  231 (315)
                      +  -++++.|..+.|.++       ..-|++..
T Consensus       168 A--~E~ll~~~kltA~Ea-------~~~glVsk  191 (266)
T KOG0016|consen  168 A--NEMLLFGEKLTAQEA-------CEKGLVSK  191 (266)
T ss_pred             H--HHHHHhCCcccHHHH-------HhcCchhh
Confidence            8  999999999999999       55566643

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.58  E-value=0.00029  Score=58.40  Aligned_cols=96  Identities=22%  Similarity=0.167  Sum_probs=65.9

Q ss_pred             HHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCc-h----H-----------HHHhh
Q psy12573        178 LMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCST-P----A-----------VALTR  239 (315)
Q Consensus       178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~-~----~-----------~~l~~  239 (315)
                      .+..+...+.|+++.+.|.|.+.|..++++++  .+++.+.+++++....-+..... .    .           ..+.+
T Consensus        81 I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~  160 (200)
T PRK00277         81 IYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAE  160 (200)
T ss_pred             HHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777889999999999999999999865  57777787776655432221100 0    0           01222


Q ss_pred             hcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        240 KVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       240 ~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      .-|  .....+.+....-++++||+++|++++++.+
T Consensus       161 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        161 HTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence            222  2455666666778999999999999999875

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.58  E-value=0.00052  Score=56.62  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=71.5

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV----------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~  238 (315)
                      ..+..+...+.||++.+.|.|...|..++++||.  |++.+.+++.+....-++.......                .+.
T Consensus        72 aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a  151 (197)
T PRK14512         72 AIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIA  151 (197)
T ss_pred             HHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677889999999999999999999999986  8888888886644432221111100                011


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHH
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELES  279 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~  279 (315)
                      ..-|  .....+++.....++++||+++|++++++++.+++.+
T Consensus       152 ~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~~  194 (197)
T PRK14512        152 KETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELEE  194 (197)
T ss_pred             HHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence            2222  2355666666677999999999999999987455543

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.55  E-value=0.00029  Score=58.63  Aligned_cols=97  Identities=19%  Similarity=0.202  Sum_probs=71.1

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccC-CCCCCchH-----------------HH
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARH-GIFCSTPA-----------------VA  236 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~-Gl~~~~~~-----------------~~  236 (315)
                      ..+..+..++.|++..+.|.|...|..++++||  .|++.+.+.|.+..... |-.-+...                 ..
T Consensus        84 ~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~  163 (207)
T PRK12553         84 AIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERI  163 (207)
T ss_pred             HHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            355667778889999999999999999999999  48999999988866543 21111000                 01


Q ss_pred             HhhhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        237 LTRKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       237 l~~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +++..|  .....+++..+..++++||+++|++++++.+
T Consensus       164 ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~  202 (207)
T PRK12553        164 LAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS  202 (207)
T ss_pred             HHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence            222222  3466667777888999999999999999976

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=97.42  E-value=0.0009  Score=54.07  Aligned_cols=94  Identities=21%  Similarity=0.216  Sum_probs=69.4

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCSTPAV----------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~  238 (315)
                      ..+..+...+.|+.+.+.|.|...|..++++||  .+++.+.+.|.+.+...+........                .+.
T Consensus        58 ~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~  137 (171)
T cd07017          58 AIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILA  137 (171)
T ss_pred             HHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566777899999999999999999999999  79999999998877765544221100                111


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccc
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRV  270 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v  270 (315)
                      +..|  .....+++....-++++||+++|+++++
T Consensus       138 ~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         138 KHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            2222  2355666767788999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.25  E-value=0.015  Score=50.19  Aligned_cols=77  Identities=13%  Similarity=0.183  Sum_probs=49.7

Q ss_pred             CcEEEEEccc--cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCH--HHHHHHHhcCCCCCHHHHH
Q psy12573        187 VPILAIISGV--AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPL--GVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       187 kpvIa~v~G~--~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~--~~a~~~~~~g~~~~a~~a~  262 (315)
                      .|+|+.+.|+  |.||+...+..||++++++.+++++       .   +...+....|.  -..++--+.-+.+.....+
T Consensus       137 vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~-------a---GP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~  206 (274)
T TIGR03133       137 VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL-------S---GPEVIEQEAGVEEFDSRDRALVWRTTGGKHRF  206 (274)
T ss_pred             CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec-------c---CHHHHHHhcCCCccCHHHhcccccccchHhHh
Confidence            8999999999  8999999999999999999855543       2   11111222221  0111111122334555667


Q ss_pred             HcCccccccCC
Q psy12573        263 NAGLITRVVSS  273 (315)
Q Consensus       263 ~~Glv~~v~~~  273 (315)
                      ..|.++.++++
T Consensus       207 ~sG~~D~~v~d  217 (274)
T TIGR03133       207 LSGDADVLVED  217 (274)
T ss_pred             hcccceEEeCC
Confidence            78999999986

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=97.18  E-value=0.011  Score=50.41  Aligned_cols=56  Identities=14%  Similarity=0.274  Sum_probs=49.5

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ...+.+.+.+.++.+.|..+|.-+|..++++||-+++.+.+.+|--+..+|-.|..
T Consensus       109 ~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~  164 (285)
T PF01972_consen  109 QIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA  164 (285)
T ss_pred             HHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence            34556778899999999999999999999999999999999999988888877654

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.17  E-value=0.00062  Score=55.64  Aligned_cols=97  Identities=18%  Similarity=0.262  Sum_probs=68.9

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV----------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~  238 (315)
                      ..+..+..++.|+...+.|.|...|..++++|+.  |++.+.+.|.+.+...+........                .+.
T Consensus        65 ~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~  144 (182)
T PF00574_consen   65 AIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYA  144 (182)
T ss_dssp             HHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHH
Confidence            4666788899999999999999999999999999  7999999998887765544211100                111


Q ss_pred             hh--cCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RK--VPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~--~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      ..  .......+++....-++++||+++|++|+++.+
T Consensus       145 ~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  145 ERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             HHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred             HHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence            11  122355555555566899999999999999764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.16  E-value=0.046  Score=47.87  Aligned_cols=96  Identities=13%  Similarity=0.112  Sum_probs=65.3

Q ss_pred             HHhcCCCcEEEEEccccchhhhH-HHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~-l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.....|.|+.+.|++.||+.. .++.+|++++.+.+.+++       ...   ..+.+.++...      .-+.-+++
T Consensus       189 ~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~-------aGp---rvie~~~~e~l------pe~~~~ae  252 (292)
T PRK05654        189 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGF-------AGP---RVIEQTVREKL------PEGFQRAE  252 (292)
T ss_pred             HHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEe-------cCH---HHHHhhhhhhh------hhhhcCHH
Confidence            44566799999999999998765 466799999998855544       311   11111111111      01123566


Q ss_pred             HHHHcCccccccCCchHHHHHHHHHHHHHHhCCH
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVLTSAILENSR  293 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~  293 (315)
                      -+.+.|+||.+++. .++.+...++.+.+..+++
T Consensus       253 ~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~~~  285 (292)
T PRK05654        253 FLLEHGAIDMIVHR-RELRDTLASLLALHTKQPA  285 (292)
T ss_pred             HHHhCCCCcEEECH-HHHHHHHHHHHHHHhcCCC
Confidence            67899999999999 9999998888887765543

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.12  E-value=0.079  Score=46.24  Aligned_cols=94  Identities=14%  Similarity=0.190  Sum_probs=63.8

Q ss_pred             HHhcCCCcEEEEEccccchhhhH-HHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~-l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.....|.|+.+.|++.||+.. .++.+|++++.+.+.+++...+          .+.+.++...      .-+.-+++
T Consensus       188 ~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr----------Vie~ti~e~l------pe~~q~ae  251 (285)
T TIGR00515       188 KMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR----------VIEQTVREKL------PEGFQTSE  251 (285)
T ss_pred             HHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH----------HHHHHhcCcc------chhcCCHH
Confidence            44566899999999999998766 4569999999999555442211          1111122111      01123556


Q ss_pred             HHHHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                      -+.+.|+||.+++. .++.+...++.+.+...
T Consensus       252 ~~~~~G~vD~iv~~-~~~r~~l~~~L~~~~~~  282 (285)
T TIGR00515       252 FLLEHGAIDMIVHR-PEMKKTLASLLAKLQNL  282 (285)
T ss_pred             HHHhCCCCcEEECc-HHHHHHHHHHHHHHhhC
Confidence            67889999999999 99988888887765443

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=97.10  E-value=0.00058  Score=54.17  Aligned_cols=100  Identities=21%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc------------CCCC--------------CCc-hH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR------------HGIF--------------CST-PA  234 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~------------~Gl~--------------~~~-~~  234 (315)
                      ..+..|||++.+.+.+..+|..++.+||.+++.+.+.++...+.            +|+-              +.. .+
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            35689999999999999789999999999999999877663321            2211              000 00


Q ss_pred             --H--HHh-----------hh------cCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHH
Q psy12573        235 --V--ALT-----------RK------VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV  283 (315)
Q Consensus       235 --~--~l~-----------~~------~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~  283 (315)
                        .  .+.           ..      +..... +-+..|..+++++|++.||||++-.. +++.+...+
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v-~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~  149 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDV-EEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAK  149 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH-HCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHH
Confidence              0  000           00      111122 22467888999999999999999766 666555444

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=97.09  E-value=0.06  Score=45.81  Aligned_cols=100  Identities=17%  Similarity=0.241  Sum_probs=70.2

Q ss_pred             HHHHHHHhcCCCcEEEEEccccchhh-hHHHhhcCeeeeeCCceeeCCCccCCCC-CCchHHHHhhhcCHHHHHHHHhcC
Q psy12573        176 SDLMLSILRHPVPILAIISGVAAAAG-CQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVVRSMTITG  253 (315)
Q Consensus       176 ~~~~~~l~~~~kpvIa~v~G~~~g~G-~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a~~~~~~g  253 (315)
                      ...+..+.....|.|+.+..+..||= ...++.+|+.+|++.       ..+|+. |.+.-...-..++..         
T Consensus       185 saAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~-------AlIGFAGpRVIEQTire~LPeg---------  248 (294)
T COG0777         185 SAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPG-------ALIGFAGPRVIEQTIREKLPEG---------  248 (294)
T ss_pred             HHHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcc-------cccccCcchhhhhhhcccCCcc---------
Confidence            34566777889999999999998742 458889999999998       555654 222112222222211         


Q ss_pred             CCCCHHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCH
Q psy12573        254 IPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR  293 (315)
Q Consensus       254 ~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~  293 (315)
                       --+++-.++.|+||.+++. .++......+...+...++
T Consensus       249 -fQ~aEfLlehG~iD~iv~R-~elr~tla~ll~~~~~~~~  286 (294)
T COG0777         249 -FQTAEFLLEHGMIDMIVHR-DELRTTLASLLAKLTPQPA  286 (294)
T ss_pred             -hhhHHHHHHcCCceeeecH-HHHHHHHHHHHHHhCCCCC
Confidence             1244556899999999999 9999998888888776554

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.07  E-value=0.0041  Score=51.98  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=69.9

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCC---CCch--HH-----------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIF---CSTP--AV-----------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~---~~~~--~~-----------~l~  238 (315)
                      ..+..+...+.||...+.|.|...|.-|+++||.  |++.+.+++.+....-|..   .+..  ..           .++
T Consensus       103 aIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya  182 (221)
T PRK14514        103 GIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIA  182 (221)
T ss_pred             HHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            3556777888999999999999999999999997  8899999987766543332   1110  00           111


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +.-|  .....+.+....-++++||+++|++++++..
T Consensus       183 ~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        183 DHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeec
Confidence            2222  2355566666777999999999999999864

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.07  E-value=0.043  Score=47.79  Aligned_cols=83  Identities=13%  Similarity=0.102  Sum_probs=58.9

Q ss_pred             cCCCcEEEEEccccchhhhHH-HhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCC-----CC
Q psy12573        184 RHPVPILAIISGVAAAAGCQL-VATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIP-----IS  257 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l-~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~-----~~  257 (315)
                      .-..|.|+.+.|++.||+... ++.||++++.+.+       .+|+.            |++..++.  +|+.     -+
T Consensus       205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A-------~IgfA------------GPrVIe~t--~ge~lpe~fq~  263 (296)
T CHL00174        205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNA-------YIAFA------------GKRVIEQT--LNKTVPEGSQA  263 (296)
T ss_pred             cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCe-------EEEee------------CHHHHHHh--cCCcCCccccc
Confidence            457899999999999998876 5569999998884       34443            22222221  1222     24


Q ss_pred             HHHHHHcCccccccCCchHHHHHHHHHHHHH
Q psy12573        258 AQDAYNAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       258 a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                      ++-.++.|+||.+++. .++.+...++.+-+
T Consensus       264 ae~l~~~G~vD~iV~r-~~lr~~l~~ll~~~  293 (296)
T CHL00174        264 AEYLFDKGLFDLIVPR-NLLKGVLSELFQLH  293 (296)
T ss_pred             HHHHHhCcCceEEEcH-HHHHHHHHHHHHhh
Confidence            5667899999999999 88888877776543

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=97.07  E-value=0.0043  Score=51.26  Aligned_cols=97  Identities=13%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCchHH-----------------HH
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCSTPAV-----------------AL  237 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~~~~-----------------~l  237 (315)
                      ..+..+...+.||...+.|.|.+.|.-++++|+  .|++.+.++|.+.....|...+-...                 .+
T Consensus        79 aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~y  158 (200)
T CHL00028         79 AIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVY  158 (200)
T ss_pred             HHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888999999999999999999999999  58999999998877655522111100                 01


Q ss_pred             hhhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        238 TRKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       238 ~~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      .+.-|  .....+.+....-++++||+++|++|+++.+
T Consensus       159 a~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        159 AQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             HHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeec
Confidence            11112  2355566666677999999999999999875

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=97.02  E-value=0.033  Score=48.76  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=31.5

Q ss_pred             CcEEEEEccc--cchhhhHHHhhcCeeeeeCCceeeC
Q psy12573        187 VPILAIISGV--AAAAGCQLVATCDLAIATTASKFST  221 (315)
Q Consensus       187 kpvIa~v~G~--~~g~G~~l~l~~d~~~a~~~a~~~~  221 (315)
                      .|+|+.+.|+  |.||+...+..||++++++.+++++
T Consensus       146 VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl  182 (301)
T PRK07189        146 VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL  182 (301)
T ss_pred             CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence            9999999999  9999999999999999999855443

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=96.95  E-value=0.0075  Score=49.58  Aligned_cols=95  Identities=20%  Similarity=0.173  Sum_probs=66.3

Q ss_pred             HHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCC---CCCch--HH-----------HHhh
Q psy12573        178 LMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGI---FCSTP--AV-----------ALTR  239 (315)
Q Consensus       178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl---~~~~~--~~-----------~l~~  239 (315)
                      .+..+...+.|+...+.|.|...|.-++++++  .|++.+.++|.+.+...|.   ..+..  ..           .+.+
T Consensus        76 I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~  155 (191)
T TIGR00493        76 IYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILAN  155 (191)
T ss_pred             HHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            45556667777777888999999999998877  4899999999886654332   22211  00           1222


Q ss_pred             hcC--HHHHHHHHhcCCCCCHHHHHHcCccccccC
Q psy12573        240 KVP--LGVVRSMTITGIPISAQDAYNAGLITRVVS  272 (315)
Q Consensus       240 ~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~  272 (315)
                      +-|  .....+.+..+..++++||+++|++++++.
T Consensus       156 ~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       156 HTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             HHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence            323  245666677777899999999999999874

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK11778 putative inner membrane peptidase; Provisional

Probab=96.92  E-value=0.0049  Score=54.69  Aligned_cols=101  Identities=20%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc------------CCCCCCc---------------
Q psy12573        180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR------------HGIFCST---------------  232 (315)
Q Consensus       180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~------------~Gl~~~~---------------  232 (315)
                      .+++...||+++.+.+.+.-||..+++.||.+++.+.+..|...+.            +|+-...               
T Consensus       148 ~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~  227 (330)
T PRK11778        148 QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGE  227 (330)
T ss_pred             HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCC
Confidence            4556778999999999999999999999999999998876542221            2221000               


Q ss_pred             --hH--H-----------HHhhhcCHH---HHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHH
Q psy12573        233 --PA--V-----------ALTRKVPLG---VVRSMTITGIPISAQDAYNAGLITRVVSSNEELESET  281 (315)
Q Consensus       233 --~~--~-----------~l~~~~g~~---~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~  281 (315)
                        ..  .           .+...+...   ...+-+.+|+.+++++|++.||||++-.. +++....
T Consensus       228 ~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~  293 (330)
T PRK11778        228 NTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLEL  293 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHH
Confidence              00  0           000001000   11334567899999999999999999877 6665433

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=96.92  E-value=0.0067  Score=49.92  Aligned_cols=97  Identities=18%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCC---CCch--HH-----------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIF---CSTP--AV-----------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~---~~~~--~~-----------~l~  238 (315)
                      ..+..+...+.||...+.|.|...|.-++++|+.  |++.+.+++.+....-|..   .+..  ..           .+.
T Consensus        74 aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya  153 (196)
T PRK12551         74 GIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELS  153 (196)
T ss_pred             HHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            3566777888899999999999999999999986  7889999987766543322   1110  00           112


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      ++-|  .....+.+....-++++||+++|++++++..
T Consensus       154 ~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        154 ERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             HHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence            2222  2355666666677999999999999999876

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=96.87  E-value=0.0083  Score=49.50  Aligned_cols=97  Identities=19%  Similarity=0.178  Sum_probs=70.6

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCC---CCch--HH-----------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIF---CSTP--AV-----------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~---~~~~--~~-----------~l~  238 (315)
                      ..+..+...+.||...+.|.|...|.-++++||.  |++.+.+++.+.....|.-   ++.-  +.           .+.
T Consensus        76 aIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya  155 (201)
T PRK14513         76 AIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYH  155 (201)
T ss_pred             HHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666778888999999999999999999999996  8999999997766654432   1110  00           011


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +.-|  .....+.+....-++++||+++|++++++..
T Consensus       156 ~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~  192 (201)
T PRK14513        156 RHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP  192 (201)
T ss_pred             HHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence            2222  2355566666677999999999999999876

>cd07014 S49_SppA Signal peptide peptidase A

Probab=96.76  E-value=0.00025  Score=57.71  Aligned_cols=93  Identities=13%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHH------HHH-HHHHHHHhcCCCcEEEEEcccc
Q psy12573        126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILV------STC-SDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~------~~~-~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +.+.+||+|++++|.+.|+|..+++.||+.++.+.+.|+.+... +..      ... ..+...+.+.        .|..
T Consensus        67 ~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~--------rg~~  138 (177)
T cd07014          67 ARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADN--------RHST  138 (177)
T ss_pred             HHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHh--------CCCC
Confidence            45679999999999999999999999999999999888877654 211      111 1111122111        1322


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP  233 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~  233 (315)
                      ..--.+++..+....+.++       .+.|++....
T Consensus       139 ~~~~~~~l~~g~~~~a~~A-------~~~GLVD~v~  167 (177)
T cd07014         139 PEQQIDKIAQGGVWTGQDA-------KANGLVDSLG  167 (177)
T ss_pred             HHHhHHHhcCcCeEeHHHH-------HHcCCcccCC
Confidence            2222667777788888888       8889987763

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=96.69  E-value=0.069  Score=45.85  Aligned_cols=127  Identities=19%  Similarity=0.246  Sum_probs=83.4

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .+++....+...|+|..|+-    .|..-..+      +        |.++........+..+.+++.|+|+.|-|..-+
T Consensus       140 lRlm~~AekF~lPiitfIDT----~GAypG~~------A--------EErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgS  201 (317)
T COG0825         140 LRLMKLAEKFGLPIITFIDT----PGAYPGIG------A--------EERGQSEAIARNLREMARLKVPIISIVIGEGGS  201 (317)
T ss_pred             HHHHHHHHHhCCCEEEEecC----CCCCCCcc------h--------hhcccHHHHHHHHHHHhCCCCCEEEEEecCCCc
Confidence            35566667788999988763    22211111      1        111334445556667889999999999999998


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      ||.--...+|.+.+-+.+.|+.      +.|++.+. +.++ -..++++.. ....+++.+.+++|+|+.+++.
T Consensus       202 GGALAi~vad~V~mle~s~ySV------isPEG~As-ILWk-D~~ka~eAA-e~mkita~dLk~lgiID~II~E  266 (317)
T COG0825         202 GGALAIGVADRVLMLENSTYSV------ISPEGCAS-ILWK-DASKAKEAA-EAMKITAHDLKELGIIDGIIPE  266 (317)
T ss_pred             hhhHHhhHHHHHHHHHhceeee------cChhhhhh-hhhc-ChhhhHHHH-HHcCCCHHHHHhCCCcceeccC
Confidence            8888888899999999866543      23444322 2222 122333332 2357899999999999999975

>KOG1683|consensus

Probab=96.64  E-value=0.00025  Score=62.54  Aligned_cols=175  Identities=14%  Similarity=0.093  Sum_probs=116.3

Q ss_pred             CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHHHHHHHHHHH
Q psy12573         47 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS  125 (315)
Q Consensus        47 ~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (315)
                      .+.|+.|-...        .++-..|+++..+..+++...++.. ..|++|.|..+...                     
T Consensus        74 ieav~edl~Lk--------~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vv---------------------  124 (380)
T KOG1683|consen   74 IEAVFEDLELK--------HELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVV---------------------  124 (380)
T ss_pred             ccchhhhHHHH--------HHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhc---------------------
Confidence            45566655554        8888888888888777888777654 33445665544331                     


Q ss_pred             HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhh--hH
Q psy12573        126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAG--CQ  203 (315)
Q Consensus       126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G--~~  203 (315)
                                         |..|-.               |   ...-.+.+.+.....++.|+.++++|..-.+|  +-
T Consensus       125 -------------------g~h~fs---------------p---a~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vv  167 (380)
T KOG1683|consen  125 -------------------GMHFFS---------------P---AHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVV  167 (380)
T ss_pred             -------------------cccccC---------------H---HHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEE
Confidence                               111100               0   12223455666777788888888889888888  77


Q ss_pred             HHhhcCeeeeeC--CceeeCCCccCCCC-CCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC-chHHHH
Q psy12573        204 LVATCDLAIATT--ASKFSTPGARHGIF-CSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS-NEELES  279 (315)
Q Consensus       204 l~l~~d~~~a~~--~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~-~~~~~~  279 (315)
                      ++-+|++++...  ....+..+...++. +.+-...+...+|.+.+-..+..+.-++..|+++.|+++++.++ .+++.+
T Consensus       168 Vg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~  247 (380)
T KOG1683|consen  168 VGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEEELLE  247 (380)
T ss_pred             eccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHHHHHH
Confidence            888999999873  33336677777743 44433345556666666666777888999999999999999884 377777


Q ss_pred             HHHHHHHH
Q psy12573        280 ETKVLTSA  287 (315)
Q Consensus       280 ~~~~~~~~  287 (315)
                      ..+.....
T Consensus       248 ~~~~g~kT  255 (380)
T KOG1683|consen  248 KGRAGIKT  255 (380)
T ss_pred             HHhhhhhc
Confidence            66655433

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.55  E-value=0.081  Score=50.29  Aligned_cols=146  Identities=11%  Similarity=0.156  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ...+.+....+...|+|..++.    .|  |..|.+-            |..+.+.....++..+.....|.|+.|.|.+
T Consensus       338 K~~r~i~~a~~~~lPlV~lvDs----~G--~~~g~~~------------E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~  399 (512)
T TIGR01117       338 KIARFIRFCDAFNIPIVTFVDV----PG--FLPGVNQ------------EYGGIIRHGAKVLYAYSEATVPKVTIITRKA  399 (512)
T ss_pred             HHHHHHHHHHHcCCCEEEEEeC----cC--ccccHHH------------HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            3445555556788999988875    23  3332111            1125555666777788889999999999999


Q ss_pred             chhhhHHHhh-----cCeeeeeCCceeeCCCccCCCCCCchH-H-HHhhhcC----HHHH-HHHH--hcCCCCCHHHHHH
Q psy12573        198 AAAGCQLVAT-----CDLAIATTASKFSTPGARHGIFCSTPA-V-ALTRKVP----LGVV-RSMT--ITGIPISAQDAYN  263 (315)
Q Consensus       198 ~g~G~~l~l~-----~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~-~l~~~~g----~~~a-~~~~--~~g~~~~a~~a~~  263 (315)
                      .|+| .++++     +|++++-+++       ++|+.+..++ . .+.+.+.    ...+ ++.+  ..-+..++..+.+
T Consensus       400 ~Gga-~~am~~~~~~~d~~~a~p~a-------~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  471 (512)
T TIGR01117       400 YGGA-YLAMCSKHLGADQVYAWPTA-------EIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAA  471 (512)
T ss_pred             chHH-HHHhccccCCCCEEEEcCCC-------eEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHh
Confidence            8764 55554     8888888884       4455432221 1 1211111    1111 1111  1123457788999


Q ss_pred             cCccccccCCchHHHHHHHHHHHHHHh
Q psy12573        264 AGLITRVVSSNEELESETKVLTSAILE  290 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~  290 (315)
                      .|+++.+++. .+..+...+..+.+..
T Consensus       472 ~g~vD~VI~P-~~tR~~l~~~l~~~~~  497 (512)
T TIGR01117       472 RGYVDDVIEP-KQTRPKIVNALAMLES  497 (512)
T ss_pred             cCCCCeeECh-HHHHHHHHHHHHHHhc
Confidence            9999999999 8888777777665543

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=96.51  E-value=0.0013  Score=52.59  Aligned_cols=80  Identities=16%  Similarity=0.141  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec
Q psy12573         64 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA  143 (315)
Q Consensus        64 ~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g  143 (315)
                      .+..+...|..++.++ .-.+.|.+-|+...+|.                       .+.+.+...++|+++.++|.+.+
T Consensus        16 ~~~~~~~~l~~~~~~~-~i~l~inspGG~~~~~~-----------------------~i~~~i~~~~~pvi~~v~g~a~s   71 (160)
T cd07016          16 TAKEFKDALDALGDDS-DITVRINSPGGDVFAGL-----------------------AIYNALKRHKGKVTVKIDGLAAS   71 (160)
T ss_pred             CHHHHHHHHHhccCCC-CEEEEEECCCCCHHHHH-----------------------HHHHHHHhcCCCEEEEEcchHHh
Confidence            3488889999888763 33455566665443332                       23344566789999999999999


Q ss_pred             ccchhccccChhhhhhhcCCCCcc
Q psy12573        144 AGCQLVATCDLAIATTASKFSTPG  167 (315)
Q Consensus       144 ~G~~f~~g~D~~~~~~~~~~~~~~  167 (315)
                      +|..+..+||.+++.+.+.|....
T Consensus        72 ~g~~ia~a~d~~~~~~~a~~~~~~   95 (160)
T cd07016          72 AASVIAMAGDEVEMPPNAMLMIHN   95 (160)
T ss_pred             HHHHHHhcCCeEEECCCcEEEEEC
Confidence            999999999999998887765443

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.37  E-value=0.094  Score=44.53  Aligned_cols=88  Identities=11%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             HHHHHhcCCCcEEEEEccccchhhhHHH-hhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcC--C
Q psy12573        178 LMLSILRHPVPILAIISGVAAAAGCQLV-ATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITG--I  254 (315)
Q Consensus       178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~-l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g--~  254 (315)
                      .+......+.|+|+.|.|.+.|||+.-. +.+|.+++-+.       ..++..+..+...+.++ ....+.++...-  .
T Consensus        99 a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~-------A~i~vm~~e~aa~I~~~-~~~~~~e~a~~~~~~  170 (238)
T TIGR03134        99 ALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPG-------AMVHVMDLESMARVTKR-SVEELEALAKSSPVF  170 (238)
T ss_pred             HHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCC-------cEEEecCHHHHHHHHcc-CHhHHHHHHHhhhhh
Confidence            3444456679999999999998775533 34777777766       55566544433333222 112333333221  2


Q ss_pred             CCCHHHHHHcCccccccCC
Q psy12573        255 PISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       255 ~~~a~~a~~~Glv~~v~~~  273 (315)
                      ..+...+.+.|+|+.+++.
T Consensus       171 a~~~~~~~~~G~vd~vi~~  189 (238)
T TIGR03134       171 APGIENFVKLGGVHALLDV  189 (238)
T ss_pred             ccCHHHHHhCCCccEEeCC
Confidence            3567788999999999986

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.018  Score=52.49  Aligned_cols=108  Identities=19%  Similarity=0.289  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHhcCCCcEEEEEccc---cchhhhHHHhhcCeeeeeCCceeeCCCccCCCC--C-Cch------HH--
Q psy12573        170 ILVSTCSDLMLSILRHPVPILAIISGV---AAAAGCQLVATCDLAIATTASKFSTPGARHGIF--C-STP------AV--  235 (315)
Q Consensus       170 ~~~~~~~~~~~~l~~~~kpvIa~v~G~---~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~--~-~~~------~~--  235 (315)
                      ++...+....+.+...|.|++..|.-.   |.-.|.+++++||+..+++.+.+|-...-.+-.  + ...      .+  
T Consensus        69 Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~  148 (436)
T COG1030          69 GLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIR  148 (436)
T ss_pred             chHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHH
Confidence            455566778889999999998888765   888999999999999999997776544322111  0 001      11  


Q ss_pred             HHhhhcCH--HHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        236 ALTRKVPL--GVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       236 ~l~~~~g~--~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      .+++.-|+  ..+.+++.....++++||++.|+++-+..+.+|+
T Consensus       149 ~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~el  192 (436)
T COG1030         149 SLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNEL  192 (436)
T ss_pred             HHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHH
Confidence            24444444  4888899999999999999999999887653333

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=96.23  E-value=0.038  Score=49.77  Aligned_cols=130  Identities=19%  Similarity=0.230  Sum_probs=70.6

Q ss_pred             CCCcccccCCCCccccchHHHHHHHHHHhhhc-------CCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHH
Q psy12573         46 NLPRHRLDAGTFGTMGVGLGFALAAALYCNHY-------APGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFST  118 (315)
Q Consensus        46 ~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~-------d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~  118 (315)
                      ..+.|++  ..+++||+++|.+++.++.....       +++..+|++.|||.+ +.|.....+..              
T Consensus       118 ~~~~~~~--~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~-~~G~~~Ealn~--------------  180 (341)
T CHL00149        118 SAPHNFL--GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTT-NNGQFFECLNM--------------  180 (341)
T ss_pred             chhcCcc--CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchh-hhcHHHHHHHH--------------
Confidence            3446666  35699999999999999984322       257789999999985 35554333211              


Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchh-ccccChhhhhhhcCCCCcchh--h-----HHHHHHHHHHHHhcCCCcEE
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQL-VATCDLAIATTASKFSTPGYN--I-----LVSTCSDLMLSILRHPVPIL  190 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f-~~g~D~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~l~~~~kpvI  190 (315)
                           ....+.|...++.=|++..+..... +...|+...++.  |+.+..+  +     ....+...+...+...+|++
T Consensus       181 -----A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a--~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~l  253 (341)
T CHL00149        181 -----AVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEA--FGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTL  253 (341)
T ss_pred             -----HhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHh--CCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence                 0112233223333444333332211 123455544444  4444433  1     12223445555566677887


Q ss_pred             EEEccccch
Q psy12573        191 AIISGVAAA  199 (315)
Q Consensus       191 a~v~G~~~g  199 (315)
                      ..+.=+-..
T Consensus       254 Iev~tyR~~  262 (341)
T CHL00149        254 IEALTYRFR  262 (341)
T ss_pred             EEEEEecCC
Confidence            766655544

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=96.22  E-value=0.027  Score=47.11  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=68.5

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV----------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~  238 (315)
                      ..+..+...+-+|...+.|.|.+.+.-|+++|+.  |.+-+.+++.+.....|......-.                .+.
T Consensus        98 aIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya  177 (222)
T PRK12552         98 AICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILS  177 (222)
T ss_pred             HHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888889999999999999999999997  8888999987766554432111100                011


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +.-|  .....+.+....-++++||+++|++++++..
T Consensus       178 ~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        178 RNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             HHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence            1112  1244555555567999999999999999865

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.21  E-value=0.11  Score=49.39  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=57.9

Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH---
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA---  261 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a---  261 (315)
                      -..|.|+.+.|+|.||+......||++++.+..      ..+++.            |++..+.  .+|+.+++++.   
T Consensus       153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~------a~i~~a------------GP~vv~~--~~Ge~v~~e~lGGa  212 (512)
T TIGR01117       153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNT------SQMFIT------------GPQVIKT--VTGEEVTAEQLGGA  212 (512)
T ss_pred             CCCcEEEEEecCCCcHHHHHHHhcCceEEeccc------eEEEec------------ChHHHHh--hcCcccchhhcchH
Confidence            358999999999999999888899999999862      123332            2222222  12444444432   


Q ss_pred             ----HHcCccccccCCchHHHHHHHHHHHHHHh
Q psy12573        262 ----YNAGLITRVVSSNEELESETKVLTSAILE  290 (315)
Q Consensus       262 ----~~~Glv~~v~~~~~~~~~~~~~~~~~l~~  290 (315)
                          ..-|.++.++++.++..+.++++..-+-.
T Consensus       213 ~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~  245 (512)
T TIGR01117       213 MAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS  245 (512)
T ss_pred             HHhccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence                35789988888756677777777766543

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.12  E-value=0.023  Score=50.57  Aligned_cols=93  Identities=20%  Similarity=0.248  Sum_probs=62.2

Q ss_pred             cEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcC-------------------------
Q psy12573        188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP-------------------------  242 (315)
Q Consensus       188 pvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g-------------------------  242 (315)
                      ||++.|.+.|.-||..++++||.++|++.+..|=-.+..+.. ..  ..+..+.|                         
T Consensus       130 PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~-~~--~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~  206 (317)
T COG0616         130 PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGAP-NF--EELLEKLGVEKEVITAGEYKDILSPFRPLTEEE  206 (317)
T ss_pred             CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEecC-CH--HHHHHhcCCceeeeeccccccccCcccCCCHHH
Confidence            999999999999999999999999999997765433322211 11  01111111                         


Q ss_pred             -------------------------HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHH
Q psy12573        243 -------------------------LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL  284 (315)
Q Consensus       243 -------------------------~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~  284 (315)
                                               ......-+.+|+.+++++|.+.|||+++-.. ++........
T Consensus       207 ~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~~~  272 (317)
T COG0616         207 REILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAAEL  272 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHHHh
Confidence                                     0011234567888999999999999999776 5544444433

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.11  E-value=0.04  Score=45.04  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=66.5

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCee--eeeCCceeeCCCccCCCCCCchH-H------------H----H
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLA--IATTASKFSTPGARHGIFCSTPA-V------------A----L  237 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~--~a~~~a~~~~pe~~~Gl~~~~~~-~------------~----l  237 (315)
                      ..+..++..+.||...+.|.+...|.-|+++++..  ++.+.+++-+.... |.+-+... .            .    +
T Consensus        76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~  154 (200)
T COG0740          76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIY  154 (200)
T ss_pred             HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            36667888999999999999999999999999985  88888887665544 33322211 0            0    1


Q ss_pred             hhhcCHH--HHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        238 TRKVPLG--VVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       238 ~~~~g~~--~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +..-|..  ...+.+-...-++++||+++||+++|...
T Consensus       155 a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~  192 (200)
T COG0740         155 AEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES  192 (200)
T ss_pred             HHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence            1111211  22233334556899999999999999876

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=96.03  E-value=0.0065  Score=49.31  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEe
Q psy12573         65 GFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAA  142 (315)
Q Consensus        65 ~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~  142 (315)
                      ..-+..+|+++++++ .+.|++  .+-|+      ++...                 ..+...+.+.++|+++.++|.+.
T Consensus        15 ~~~l~~~l~~a~~~~-~~~ivl~inspGG------~v~~~-----------------~~I~~~l~~~~~pvva~V~g~Aa   70 (178)
T cd07021          15 AAFVERALKEAKEEG-ADAVVLDIDTPGG------RVDSA-----------------LEIVDLILNSPIPTIAYVNDRAA   70 (178)
T ss_pred             HHHHHHHHHHHHhCC-CCeEEEEEECcCC------CHHHH-----------------HHHHHHHHhCCCCEEEEECCchH
Confidence            367788888887776 455555  34343      22221                 23445567788999999999999


Q ss_pred             cccchhccccChhhhhhhcCCCCcc
Q psy12573        143 AAGCQLVATCDLAIATTASKFSTPG  167 (315)
Q Consensus       143 g~G~~f~~g~D~~~~~~~~~~~~~~  167 (315)
                      ++|..++.+||...+.+.+.++..+
T Consensus        71 SaG~~ia~a~d~i~m~p~a~iG~~~   95 (178)
T cd07021          71 SAGALIALAADEIYMAPGATIGAAE   95 (178)
T ss_pred             HHHHHHHHhCCeEEECCCCeEecCe
Confidence            9999999999999998887776543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=95.93  E-value=0.42  Score=45.44  Aligned_cols=87  Identities=21%  Similarity=0.349  Sum_probs=60.0

Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.. ..|+|+.+.|+|.|+|.++...||++++.+. +++       ++.            |++..+.  .+|+.++.+
T Consensus       127 ~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~------------GP~vv~~--~~Ge~~~~~  184 (493)
T PF01039_consen  127 RLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARI-------FLA------------GPRVVES--ATGEEVDSE  184 (493)
T ss_dssp             HHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEE-------ESS------------THHHHHH--HHSSCTSHH
T ss_pred             HHhc-CCCeEEEEccccccchhhcccccCccccCccceEE-------Eec------------ccccccc--ccCccccch
Confidence            4445 9999999999999999999999999999886 444       332            3333332  246777766


Q ss_pred             HH-------HHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        260 DA-------YNAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       260 ~a-------~~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                      +.       ...|.++.+++++++..+.++++..-+-
T Consensus       185 ~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp  221 (493)
T PF01039_consen  185 ELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLP  221 (493)
T ss_dssp             HHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred             hhhhhhhhcccCCCceEEEechHHHHHHHHHhhcccc
Confidence            53       4679999999883344555666555443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=95.73  E-value=0.33  Score=47.08  Aligned_cols=41  Identities=12%  Similarity=0.061  Sum_probs=29.8

Q ss_pred             HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeC
Q psy12573        180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST  221 (315)
Q Consensus       180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~  221 (315)
                      ..+....|||+|...+++ -+|..++..||.+++.+...+++
T Consensus       120 ~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       120 SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL  160 (584)
T ss_pred             HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence            344456788888777665 45788899999999988766644

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=95.50  E-value=0.077  Score=47.85  Aligned_cols=44  Identities=16%  Similarity=0.013  Sum_probs=35.1

Q ss_pred             CCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573         47 LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF   92 (315)
Q Consensus        47 ~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~   92 (315)
                      ...|.+...  ++||.++|.+++.++..--..++..+|++.|||.+
T Consensus       113 ~~~~~~g~~--~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~  156 (341)
T TIGR03181       113 EGVNILPPN--IPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGT  156 (341)
T ss_pred             hhcCccCCC--chHhcchhHHHhHHHHHHhhCCCCEEEEEecCCcc
Confidence            344555443  67999999999999987666688899999999985

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=95.45  E-value=0.14  Score=45.58  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=36.2

Q ss_pred             cccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchh
Q psy12573         49 RHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME   98 (315)
Q Consensus        49 ~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~D   98 (315)
                      .|.+..  .++||+++|.+++.++..-...++..+|++.|||.+ ..|.-
T Consensus       103 ~~~~~~--~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~-~~g~~  149 (315)
T TIGR03182       103 KNFYGG--HGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAA-NQGQF  149 (315)
T ss_pred             hCcccC--cCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcc-cccHH
Confidence            455543  489999999999999986555567899999999984 44543

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

Probab=95.23  E-value=0.14  Score=44.11  Aligned_cols=38  Identities=32%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             CCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcc
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG   93 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~   93 (315)
                      ..++||+++|.+++.++..-...++.+|++|.|||.+.
T Consensus       103 ~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~  140 (255)
T cd02012         103 TTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQ  140 (255)
T ss_pred             CCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECccccc
Confidence            34999999999999999875555688999999999754

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.

>PRK10949 protease 4; Provisional

Probab=94.77  E-value=0.68  Score=45.13  Aligned_cols=25  Identities=4%  Similarity=0.034  Sum_probs=22.3

Q ss_pred             HHHHHHHHhhhcCCCCeEEEEEcCC
Q psy12573         66 FALAAALYCNHYAPGKRVVCVQGDS   90 (315)
Q Consensus        66 ~~l~~~l~~~~~d~~~~vvvl~g~g   90 (315)
                      ..+.++|+++..|+.++.|+|.-++
T Consensus        98 ~div~~i~~Aa~D~rIkgivL~i~s  122 (618)
T PRK10949         98 FDIVNTIRQAKDDRNITGIVLDLKN  122 (618)
T ss_pred             HHHHHHHHHHhcCCCceEEEEEeCC
Confidence            6889999999999999999998765

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=94.52  E-value=0.64  Score=38.33  Aligned_cols=43  Identities=26%  Similarity=0.322  Sum_probs=33.8

Q ss_pred             CCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchh
Q psy12573         55 GTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME   98 (315)
Q Consensus        55 ~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~D   98 (315)
                      ...+++|.++|.+++.++..-...++.+++++.|||... .|.-
T Consensus        72 ~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~-eG~~  114 (195)
T cd02007          72 FGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALT-GGMA  114 (195)
T ss_pred             ECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccc-cChH
Confidence            345899999999999999865545578999999999743 4543

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=94.51  E-value=1.1  Score=43.10  Aligned_cols=88  Identities=16%  Similarity=0.211  Sum_probs=57.3

Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      +.....|.|+.+.|+|.|||......||++++.+..      ..+++.            |+...+.  .+|+.+++++.
T Consensus       201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~------a~i~~a------------GP~vV~~--~~Ge~v~~eeL  260 (569)
T PLN02820        201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGN------GTIFLA------------GPPLVKA--ATGEEVSAEDL  260 (569)
T ss_pred             HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCC------cEEEec------------CHHHHHh--hcCcccCHHHh
Confidence            344568999999999999999999999999987651      223332            3333332  23455555543


Q ss_pred             -------HHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        262 -------YNAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       262 -------~~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                             ..-|.++.++++..+..+.++++..-|-
T Consensus       261 GGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~Lp  295 (569)
T PLN02820        261 GGADVHCKVSGVSDHFAQDELHALAIGRNIVKNLH  295 (569)
T ss_pred             CCHHHhcccccccccccCchHHHHHHHHHHHHhcC
Confidence                   2468888888773444456676666653

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=94.45  E-value=0.59  Score=41.19  Aligned_cols=36  Identities=31%  Similarity=0.351  Sum_probs=31.3

Q ss_pred             CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573         57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF   92 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~   92 (315)
                      .++||+++|.+++.++..-...++.++|++.|||.+
T Consensus       103 ~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~  138 (293)
T cd02000         103 NGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGAT  138 (293)
T ss_pred             ccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCcc
Confidence            489999999999999986555678899999999984

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=94.26  E-value=1.4  Score=42.48  Aligned_cols=145  Identities=13%  Similarity=0.110  Sum_probs=85.8

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..+.+....+...|+|..++.      .+|..|.+-.            ..+.......++..+.....|.|..+-|.+.
T Consensus       390 aarfi~lc~~~~iPlv~l~D~------pGf~~G~~~E------------~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~  451 (569)
T PLN02820        390 GAHFIELCAQRGIPLLFLQNI------TGFMVGSRSE------------ASGIAKAGAKMVMAVACAKVPKITIIVGGSF  451 (569)
T ss_pred             HHHHHHHHHhcCCCEEEEEEC------CCCCCCHHHH------------HhhHHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence            344445555677888887775      2243332221            1256666677788888999999999999999


Q ss_pred             hhhhHHHh----hcCeeeeeCCceeeCCCccCCCCCCchHH-HHhh-hc-----------CHHH--HHHHH--hcCCCCC
Q psy12573        199 AAGCQLVA----TCDLAIATTASKFSTPGARHGIFCSTPAV-ALTR-KV-----------PLGV--VRSMT--ITGIPIS  257 (315)
Q Consensus       199 g~G~~l~l----~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~-~l~~-~~-----------g~~~--a~~~~--~~g~~~~  257 (315)
                      |+|..-+.    ..|++++-+.       .++|..+..++. .+.+ .+           ....  .++.+  ...+..+
T Consensus       452 G~g~~aM~g~~~~~d~~~awp~-------A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (569)
T PLN02820        452 GAGNYGMCGRAYSPNFLFMWPN-------ARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREAN  524 (569)
T ss_pred             hHHHHHhcCcCCCCCEEEECCC-------CeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCC
Confidence            97665554    3455555555       666766443322 1211 11           0111  11111  1122457


Q ss_pred             HHHHHHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        258 AQDAYNAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       258 a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                      +..+.+.++++.|++. .+.........+...
T Consensus       525 p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~~~  555 (569)
T PLN02820        525 PYYSTARLWDDGVIDP-ADTRRVLGLCLSAAL  555 (569)
T ss_pred             HHHHHHcCCcCcccCH-HHHHHHHHHHHHHhh
Confidence            7788899999999998 777666555554443

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=93.81  E-value=0.45  Score=44.82  Aligned_cols=131  Identities=15%  Similarity=0.187  Sum_probs=75.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      -..++...+...|+|.+.++    +|..+--+     +        +...++-.-+.... .++.. .|.|+.|.|+|.|
T Consensus       116 ~r~~~~A~~~g~P~i~l~ds----gGari~~~-----v--------~~l~g~g~iF~~~a-~~Sg~-IPqIsvv~G~c~g  176 (526)
T COG4799         116 LRAQELAIENGLPVIGLNDS----GGARIQEG-----V--------PSLAGYGRIFYRNA-RASGV-IPQISVVMGPCAG  176 (526)
T ss_pred             HHHHHHHHHcCCCEEEEEcc----cccccccC-----c--------cccccchHHHHHHH-HhccC-CCEEEEEEecCcc
Confidence            34555566778899987765    44433222     0        01112211122221 23334 8999999999999


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH------HHc-CccccccC
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA------YNA-GLITRVVS  272 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a------~~~-Glv~~v~~  272 (315)
                      ||.++-..||++++.++.      ..+.+.            |+...+.  -+|+.+++++.      .+. |.++.+.+
T Consensus       177 GgaY~pal~D~~imv~~~------~~mflt------------GP~~ik~--vtGe~V~~e~LGGa~vh~~~sGva~~~a~  236 (526)
T COG4799         177 GGAYSPALTDFVIMVRDQ------SYMFLT------------GPPVIKA--VTGEEVSAEELGGAQVHARKSGVADLLAE  236 (526)
T ss_pred             cccccccccceEEEEcCC------ccEEee------------CHHHHHh--hcCcEeehhhccchhhhcccccceeeeec
Confidence            999999999999999872      112121            2222222  24565555543      333 88888887


Q ss_pred             CchHHHHHHHHHHHHHH
Q psy12573        273 SNEELESETKVLTSAIL  289 (315)
Q Consensus       273 ~~~~~~~~~~~~~~~l~  289 (315)
                      ++++..+.+++++.-+-
T Consensus       237 dd~~Ai~~vr~~lsylp  253 (526)
T COG4799         237 DDEDAIELVRRLLSYLP  253 (526)
T ss_pred             CHHHHHHHHHHHHHhcC
Confidence            73445555555554443

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=92.16  E-value=0.055  Score=45.15  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573         66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG  145 (315)
Q Consensus        66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G  145 (315)
                      .++..+|..++.|+++++|+|+++    |.|+|+....              .+.+.+..+...++|+++.++|.+.|+|
T Consensus        20 ~~l~~~l~~a~~d~~i~~ivl~~~----s~Gg~~~~~~--------------~i~~~i~~~~~~~kpvia~v~g~~~s~g   81 (208)
T cd07023          20 DSLIEQLRKAREDDSVKAVVLRIN----SPGGSVVASE--------------EIYREIRRLRKAKKPVVASMGDVAASGG   81 (208)
T ss_pred             HHHHHHHHHHHhCCCCcEEEEEEE----CCCCCHHHHH--------------HHHHHHHHHHhcCCcEEEEECCcchhHH
Confidence            899999999999999999999985    5677775421              1344556677789999999999999999


Q ss_pred             chhccccChhhhhhhcCCCCcchh
Q psy12573        146 CQLVATCDLAIATTASKFSTPGYN  169 (315)
Q Consensus       146 ~~f~~g~D~~~~~~~~~~~~~~~~  169 (315)
                      ..++++||..++.+.+.++...+.
T Consensus        82 ~~lA~aaD~i~a~~~s~~g~iG~~  105 (208)
T cd07023          82 YYIAAAADKIVANPTTITGSIGVI  105 (208)
T ss_pred             HHHHhhCCEEEECCCCeEEeCcEE
Confidence            999999999999888766655444

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>PRK05899 transketolase; Reviewed

Probab=91.88  E-value=0.89  Score=44.64  Aligned_cols=38  Identities=29%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             CCccccchHHHHHHHHHHhhhcCC----------CCeEEEEEcCCCcc
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYAP----------GKRVVCVQGDSAFG   93 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d~----------~~~vvvl~g~g~~~   93 (315)
                      ..++||+++|.+++.+++.-....          +.+++++.|||.+.
T Consensus       116 ~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~  163 (624)
T PRK05899        116 TTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLM  163 (624)
T ss_pred             CCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhh
Confidence            369999999999999998643322          67999999999743

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=91.83  E-value=0.052  Score=45.40  Aligned_cols=134  Identities=17%  Similarity=0.139  Sum_probs=73.6

Q ss_pred             HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      +...+||+++.++|.+.++|..+++.||..++.+.+.++.-...........++..+.  -++.+..+.|....      
T Consensus        66 ~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~G--v~~~~~~~~g~~k~------  137 (211)
T cd07019          66 ARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIG--VHTDGVSTSPLADV------  137 (211)
T ss_pred             HHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcC--CceEEEEecCcccC------
Confidence            4557899999999999999999999999999988876654443322222333332211  11222222233221      


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCc---hHHH---Hh--hhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCST---PAVA---LT--RKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~---~~~~---l~--~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      ...+.  .+       +|.+.++....   ...+   ..  |.+.+.... .+..+..+++++|++.||||++-.. ++.
T Consensus       138 ~~~~~--~s-------~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~-~~~~~~~~~~~~A~~~GLvD~i~~~-~~~  206 (211)
T cd07019         138 SITRA--LP-------PEAQLGLQLSIENGYKRFITLVADARHSTPEQID-KIAQGHVWTGQDAKANGLVDSLGDF-DDA  206 (211)
T ss_pred             CCCCC--CC-------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH-HhcCCcEEeHHHHHHcCCcccCCCH-HHH
Confidence            00111  01       11122221111   0111   11  223333333 3567889999999999999998766 554


Q ss_pred             H
Q psy12573        278 E  278 (315)
Q Consensus       278 ~  278 (315)
                      .
T Consensus       207 ~  207 (211)
T cd07019         207 V  207 (211)
T ss_pred             H
Confidence            3

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=91.82  E-value=1.3  Score=42.13  Aligned_cols=147  Identities=10%  Similarity=0.110  Sum_probs=83.2

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..+.+....+..-|+|.+++-      .+|..|.+    .        |..+.......++..+..+..|+|..+.|.+.
T Consensus       318 ~arfi~lcd~~~iPlv~l~dt------pGf~~g~~----~--------E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~  379 (493)
T PF01039_consen  318 AARFIRLCDAFNIPLVTLVDT------PGFMPGPE----A--------ERAGIIRAGARLLYALAEATVPKITVIVRKAY  379 (493)
T ss_dssp             HHHHHHHHHHTT--EEEEEEE------CEB--SHH----H--------HHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEE
T ss_pred             HHHHHHHHHhhCCceEEEeec------ccccccch----h--------hhcchHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            334444455677899888764      23332211    1        11256666777888899999999999999999


Q ss_pred             hhhhHHHhhc----CeeeeeCCceeeCCCccCCCCCCchHH--HHhh----hc--C--HH-HHHHHHh--cCCCCCHHHH
Q psy12573        199 AAGCQLVATC----DLAIATTASKFSTPGARHGIFCSTPAV--ALTR----KV--P--LG-VVRSMTI--TGIPISAQDA  261 (315)
Q Consensus       199 g~G~~l~l~~----d~~~a~~~a~~~~pe~~~Gl~~~~~~~--~l~~----~~--g--~~-~a~~~~~--~g~~~~a~~a  261 (315)
                      |+|...+...    |+++|-+.       .++|..+..++.  ...+    .-  +  .. ..++.+.  .....++..+
T Consensus       380 Gga~~am~~~~~~~~~~~Awp~-------a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (493)
T PF01039_consen  380 GGAYYAMCGRGYGPDFVFAWPT-------AEIGVMGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRA  452 (493)
T ss_dssp             HHHHHHTTGGGGTTSEEEEETT--------EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             Ccchhhhcccccchhhhhhhhc-------ceeeecChhhhheeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHH
Confidence            9776555544    56666666       666666433221  1111    10  0  00 0111111  1122578889


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                      ...++++.+++. .+.........+-+.++
T Consensus       453 a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~  481 (493)
T PF01039_consen  453 ASRGYVDDIIDP-AETRKVLIAALEMLWQK  481 (493)
T ss_dssp             HHTTSSSEESSG-GGHHHHHHHHHHHHTTS
T ss_pred             HhcCCCCCccCH-HHHHHHHHHHHHHHHhC
Confidence            999999999998 88877766666655443

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=91.23  E-value=7.6  Score=34.27  Aligned_cols=79  Identities=15%  Similarity=0.068  Sum_probs=43.4

Q ss_pred             HHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHH--HHHHhhhcCCCCeEEEEEc
Q psy12573         12 YAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALA--AALYCNHYAPGKRVVCVQG   88 (315)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~--~~l~~~~~d~~~~vvvl~g   88 (315)
                      --++..|.+.+.++.+++.+ |-...+...+ -..|-....++    ..||-+...+.+  .++...  +++.+||++.|
T Consensus        27 ~~~~~~l~~a~g~~~vi~~~iGC~s~~~~~~-p~~~~~~~~~~----~~fg~~~a~a~Gi~~a~~~~--~~~~~Vv~~~G   99 (299)
T PRK11865         27 AIAMRLALKALGKNTVIVVATGCLEVITTPY-PETAWNVPWIH----VAFENAAAVASGIERAVKAL--GKKVNVVAIGG   99 (299)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccccCccC-cCCccccccch----hhhcchHHHHHHHHHHHHHh--cCCCeEEEEeC
Confidence            34677788888888888888 7655432221 01111122222    344444444433  333322  24678999999


Q ss_pred             CCCccccch
Q psy12573         89 DSAFGFSGM   97 (315)
Q Consensus        89 ~g~~~~aG~   97 (315)
                      ||.++-.|.
T Consensus       100 DG~~~dIG~  108 (299)
T PRK11865        100 DGGTADIGF  108 (299)
T ss_pred             CchHhhccH
Confidence            997554453

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=89.90  E-value=0.1  Score=43.78  Aligned_cols=99  Identities=19%  Similarity=0.229  Sum_probs=70.7

Q ss_pred             hccCCCcccc-cCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHH
Q psy12573         43 LLNNLPRHRL-DAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSD  121 (315)
Q Consensus        43 l~~~~~~n~~-~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~  121 (315)
                      .+++...|.+ +..++        .++.++|++++.|+++++|+|+.+    |.|+++...              ..+.+
T Consensus        12 ~~~~~~~~~~~~~~~~--------~~l~~~l~~a~~d~~i~~Vvl~~~----s~gg~~~~~--------------~~l~~   65 (214)
T cd07022          12 VPRGSWLEASSGLTSY--------EGIAAAIRAALADPDVRAIVLDID----SPGGEVAGV--------------FELAD   65 (214)
T ss_pred             eCCCCcccCCCCcccH--------HHHHHHHHHHhhCCCCcEEEEEEe----CCCCcHHHH--------------HHHHH
Confidence            3444545543 34445        999999999999999999999763    335554322              12333


Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcch
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGY  168 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~  168 (315)
                      .+..+.. ++|+|+.++|.+.|+|..++++||..++.+.+.++...+
T Consensus        66 ~l~~~~~-~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~  111 (214)
T cd07022          66 AIRAARA-GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGV  111 (214)
T ss_pred             HHHHHhc-CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeE
Confidence            4444444 799999999999999999999999999888876654443

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=89.55  E-value=3.5  Score=38.44  Aligned_cols=46  Identities=24%  Similarity=0.322  Sum_probs=32.9

Q ss_pred             cccccCCCCccccchHHHHHHHHHHhhhc-------CCCCeEEEEEcCCCccccch
Q psy12573         49 RHRLDAGTFGTMGVGLGFALAAALYCNHY-------APGKRVVCVQGDSAFGFSGM   97 (315)
Q Consensus        49 ~n~~~~~~~~~mg~~~~~~l~~~l~~~~~-------d~~~~vvvl~g~g~~~~aG~   97 (315)
                      .|.+  ...+.||.++|.+++.++..--.       .++..+|++.|||.. ..|.
T Consensus       187 ~~~~--g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~-~eG~  239 (433)
T PLN02374        187 HNLL--GGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTC-NNGQ  239 (433)
T ss_pred             hCCC--CCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCcc-ccCh
Confidence            4544  34588999999999999974222       246789999999964 3443

>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A

Probab=88.65  E-value=0.47  Score=35.64  Aligned_cols=38  Identities=13%  Similarity=0.098  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      .+.+.+..+.|.+.||.|+..+.++++++...+++++|
T Consensus        30 ~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l   67 (118)
T PF13766_consen   30 DEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECL   67 (118)
T ss_dssp             -HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHH
T ss_pred             cHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHH
Confidence            35677778899999999999999999999999999875

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=86.33  E-value=6.6  Score=38.26  Aligned_cols=45  Identities=29%  Similarity=0.366  Sum_probs=34.4

Q ss_pred             CCccccchHHHHHHHHHHhhhc-CCCCeEEEEEcCCCccccchhhhH
Q psy12573         56 TFGTMGVGLGFALAAALYCNHY-APGKRVVCVQGDSAFGFSGMELET  101 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~-d~~~~vvvl~g~g~~~~aG~Dl~~  101 (315)
                      ..+++|.++|.+++.+++.... +++.+++++.|||.. ..|.-.+.
T Consensus       115 ~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l-~eG~~~Ea  160 (580)
T PRK05444        115 GAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGAL-TGGMAFEA  160 (580)
T ss_pred             CCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEccccc-ccCHHHHH
Confidence            4589999999999999986544 467899999999973 34554433

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=85.60  E-value=21  Score=30.19  Aligned_cols=92  Identities=12%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhcCCCcEEEEEccccchhhhH-HHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhc
Q psy12573        174 TCSDLMLSILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTIT  252 (315)
Q Consensus       174 ~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~-l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~  252 (315)
                      .....+...+...=|+|+.+.|.++.|||- ..+.+|.++|-+.       +.+-.-+-....+.. ++......++..+
T Consensus        93 hla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-------a~i~vM~~~s~ARVT-k~~ve~Le~la~s  164 (234)
T PF06833_consen   93 HLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-------AMIHVMGKPSAARVT-KRPVEELEELAKS  164 (234)
T ss_pred             HHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-------CeeecCChHHhHHHh-hcCHHHHHHHhhc
Confidence            344566677788999999999999998864 7788898888665       332211111122333 2355555666555


Q ss_pred             CCCC--CHHHHHHcCccccccCC
Q psy12573        253 GIPI--SAQDAYNAGLITRVVSS  273 (315)
Q Consensus       253 g~~~--~a~~a~~~Glv~~v~~~  273 (315)
                      --.+  +.+.-.++|.++++++.
T Consensus       165 ~PvfA~gi~ny~~lG~l~~l~~~  187 (234)
T PF06833_consen  165 VPVFAPGIENYAKLGALDELWDG  187 (234)
T ss_pred             CCCcCCCHHHHHHhccHHHHhcc
Confidence            5443  45566899999999884

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=85.03  E-value=27  Score=30.91  Aligned_cols=77  Identities=16%  Similarity=0.132  Sum_probs=47.1

Q ss_pred             HHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccC-CCCccccchHHHHHHHHHHh-hhcCCCCeEEEEEcCC
Q psy12573         14 AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDA-GTFGTMGVGLGFALAAALYC-NHYAPGKRVVCVQGDS   90 (315)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~-~~~~~mg~~~~~~l~~~l~~-~~~d~~~~vvvl~g~g   90 (315)
                      ++..+.+.+.++.|++.+ |-... .... +    |.+.++- .....||-+.+.+.+.++.. ...++++.||++.|||
T Consensus        29 ~~~~l~~~lg~~~v~~~~iGC~~~-~~g~-~----p~~~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG  102 (300)
T PRK11864         29 GLRYLLKALGEKTVLVIPASCSTV-IQGD-T----PKSPLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDG  102 (300)
T ss_pred             HHHHHHHHhCCCeEEEeCCCccce-ecCC-C----CcccccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccC
Confidence            346777888888888888 55432 1111 1    3333322 23467788888888777763 2223457777799999


Q ss_pred             Cccccc
Q psy12573         91 AFGFSG   96 (315)
Q Consensus        91 ~~~~aG   96 (315)
                      .++-.|
T Consensus       103 ~~~~~g  108 (300)
T PRK11864        103 GTADIG  108 (300)
T ss_pred             cccccc
Confidence            755444

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=84.76  E-value=2.2  Score=37.56  Aligned_cols=92  Identities=17%  Similarity=0.234  Sum_probs=55.8

Q ss_pred             ccccchHHHHHHHHHHhhhcCC----CCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcE
Q psy12573         58 GTMGVGLGFALAAALYCNHYAP----GKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPI  133 (315)
Q Consensus        58 ~~mg~~~~~~l~~~l~~~~~d~----~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (315)
                      |++|-.-...+..+++.+.++.    ...+|.|.-.|+...     .+-.      ... ..+..+...+..+... .|+
T Consensus        82 GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRl-----qEg~------~~L-~~~a~i~~~~~~ls~~-VP~  148 (301)
T PRK07189         82 GSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRL-----QEAN------AGL-AAIAEIMRAIVDLRAA-VPV  148 (301)
T ss_pred             cCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCc-----cchH------HHH-HHHHHHHHHHHHHhCC-CCE
Confidence            7777777777777777665554    267777755554322     1110      000 0111112222233333 899


Q ss_pred             EEEEeeE--EecccchhccccChhhhhhhcC
Q psy12573        134 LAIISGV--AAAAGCQLVATCDLAIATTASK  162 (315)
Q Consensus       134 i~~v~G~--~~g~G~~f~~g~D~~~~~~~~~  162 (315)
                      |+++.|.  |+|++......||+.++.+.+.
T Consensus       149 I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~  179 (301)
T PRK07189        149 IGLIGGRVGCFGGMGIAAALCSYLIVSEEGR  179 (301)
T ss_pred             EEEEcCCCCCcHHHHHHHhcCCEEEEECCcE
Confidence            9999999  8998887778899999887643

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=83.49  E-value=3.2  Score=36.05  Aligned_cols=88  Identities=17%  Similarity=0.216  Sum_probs=53.6

Q ss_pred             ccccchHHHHHHHHHHhhhc----CCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHH---HHHcCC
Q psy12573         58 GTMGVGLGFALAAALYCNHY----APGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLML---SILRHP  130 (315)
Q Consensus        58 ~~mg~~~~~~l~~~l~~~~~----d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  130 (315)
                      ++||-.-...+..+++.+..    .....+|.|.-.|+...     .+-.          ..+..+.+.+.   .+... 
T Consensus        73 GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRl-----qEg~----------~~L~~~a~i~~~~~~ls~~-  136 (274)
T TIGR03133        73 GSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRL-----QEAN----------AGLIAIAEIMRAILDARAA-  136 (274)
T ss_pred             cCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcCh-----hhhH----------HHHHHHHHHHHHHHHHhCC-
Confidence            67776666777777766544    12345777755544322     2111          01111222232   23333 


Q ss_pred             CcEEEEEeeE--EecccchhccccChhhhhhhc
Q psy12573        131 VPILAIISGV--AAAAGCQLVATCDLAIATTAS  161 (315)
Q Consensus       131 ~~~i~~v~G~--~~g~G~~f~~g~D~~~~~~~~  161 (315)
                      .|.|+++.|.  |+|++..+...+|+.++.+.+
T Consensus       137 vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a  169 (274)
T TIGR03133       137 VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEG  169 (274)
T ss_pred             CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCc
Confidence            8999999999  899988888889999887664

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=82.54  E-value=5.5  Score=34.28  Aligned_cols=105  Identities=12%  Similarity=0.143  Sum_probs=68.1

Q ss_pred             CCCcccccCCCC-ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHH
Q psy12573         46 NLPRHRLDAGTF-GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLML  124 (315)
Q Consensus        46 ~~~~n~~~~~~~-~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  124 (315)
                      |-..-+++..+. |+||.-+...+..+++.+-.+ ..++|+++..|+.-+-=+-+.-+            .+......+.
T Consensus       123 pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGARMQEg~lSLM------------QMaktsaAl~  189 (294)
T COG0777         123 PVVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGARMQEGILSLM------------QMAKTSAALK  189 (294)
T ss_pred             EEEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcchhHhHHHHHHH------------HHHHHHHHHH
Confidence            333445554443 889988888888888776654 57999999988755421111100            0111223445


Q ss_pred             HHHcCCCcEEEEEeeEEeccc-chhccccChhhhhhhcCC
Q psy12573        125 SILRHPVPILAIISGVAAAAG-CQLVATCDLAIATTASKF  163 (315)
Q Consensus       125 ~~~~~~~~~i~~v~G~~~g~G-~~f~~g~D~~~~~~~~~~  163 (315)
                      .+.+...|.|++++..++||= ..|....|+.++.+.+..
T Consensus       190 ~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlI  229 (294)
T COG0777         190 RLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALI  229 (294)
T ss_pred             HHHhcCCceEEEecCCCccchhHhHHhccCeeecCccccc
Confidence            566678899999999998873 568888899887666443

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=82.15  E-value=3.3  Score=32.93  Aligned_cols=76  Identities=17%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             chHHHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEee
Q psy12573         62 VGLGFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISG  139 (315)
Q Consensus        62 ~~~~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G  139 (315)
                      -.....+...|..++.++..+.|+|  -+.|+..++|.                       .+++.+...+.|+++++.|
T Consensus        11 ~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~-----------------------~i~~~i~~~~~~v~~~~~g   67 (162)
T cd07013          11 DISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGM-----------------------AIYDTIKFIKADVVTIIDG   67 (162)
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHH-----------------------HHHHHHHhcCCCceEEEEe
Confidence            3445888888888888766555554  45554322222                       2233445567788888899


Q ss_pred             EEecccchhccccC--hhhhhhh
Q psy12573        140 VAAAAGCQLVATCD--LAIATTA  160 (315)
Q Consensus       140 ~~~g~G~~f~~g~D--~~~~~~~  160 (315)
                      .+.+.|..+.+++|  .+...+.
T Consensus        68 ~aaS~~~~i~~a~~~g~r~~~p~   90 (162)
T cd07013          68 LAASMGSVIAMAGAKGKRFILPN   90 (162)
T ss_pred             ehhhHHHHHHHcCCCCcEEEecC
Confidence            99988888877788  3444434

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=81.58  E-value=3.7  Score=36.65  Aligned_cols=84  Identities=17%  Similarity=0.229  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573         66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG  145 (315)
Q Consensus        66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G  145 (315)
                      ..+.+.|+.+..|++++.|+|.=+.+    |+....              ...+.+.+.++.... |+++.+.++++.||
T Consensus        83 ~~~~~~l~~~~~~~~vk~vvL~inSP----GG~v~a--------------s~~i~~~l~~l~~~~-PV~v~v~~~AASGG  143 (317)
T COG0616          83 DDIEEILRAARADPSVKAVVLRINSP----GGSVVA--------------SELIARALKRLRAKK-PVVVSVGGYAASGG  143 (317)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEEECc----CCchhH--------------HHHHHHHHHHHhhcC-CEEEEECCeecchh
Confidence            77888888888999999998853321    111110              112233444444444 99999999999999


Q ss_pred             chhccccChhhhhhhcCCCCcch
Q psy12573        146 CQLVATCDLAIATTASKFSTPGY  168 (315)
Q Consensus       146 ~~f~~g~D~~~~~~~~~~~~~~~  168 (315)
                      ...++++|-.++.+.+..+.-.+
T Consensus       144 Y~IA~aAd~I~a~p~si~GSIGV  166 (317)
T COG0616         144 YYIALAADKIVADPSSITGSIGV  166 (317)
T ss_pred             hhhhccCCEEEecCCceeeecee
Confidence            99999999888877655444333

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=81.13  E-value=0.49  Score=39.41  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=62.3

Q ss_pred             HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcC--CCcEEEEEeeEEec
Q psy12573         66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRH--PVPILAIISGVAAA  143 (315)
Q Consensus        66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~G~~~g  143 (315)
                      .++.++|+++..|+++++|+|+++    |.|+++....                 ++...+.+.  ++|+++.++|.+.+
T Consensus        16 ~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~~-----------------~l~~~i~~~~~~kpvia~v~g~a~s   74 (207)
T TIGR00706        16 EDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVASE-----------------EIYEKLKKLKAKKPVVASMGGVAAS   74 (207)
T ss_pred             HHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHHH-----------------HHHHHHHHhcCCCCEEEEECCccch
Confidence            789999999999999999999986    4566654321                 222333444  49999999999999


Q ss_pred             ccchhccccChhhhhhhcCCCCcc
Q psy12573        144 AGCQLVATCDLAIATTASKFSTPG  167 (315)
Q Consensus       144 ~G~~f~~g~D~~~~~~~~~~~~~~  167 (315)
                      +|..+++.||..++.+.+.++...
T Consensus        75 ~g~~la~aaD~i~a~p~a~vg~iG   98 (207)
T TIGR00706        75 GGYYIAMAADEIVANPGTITGSIG   98 (207)
T ss_pred             HHHHHHhcCCEEEECCCCeEEeee
Confidence            999999999999988876554433

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		1e-33
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		3e-32
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		7e-19
2q27_A	564	Crystal Structure Of Oxalyl-Coa Decarboxylase From		1e-13
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		6e-13
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-11
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		7e-11
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		8e-11
2c31_A	568	Crystal Structure Of Oxalyl-Coa Decarboxylase In Co		1e-10
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		4e-09
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		4e-09
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		4e-09
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		5e-09
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		6e-09
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		6e-09
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		2e-08
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		5e-08
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		2e-07
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		2e-07
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		4e-07
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		5e-07
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		7e-07
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		8e-07
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		1e-06
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		1e-06
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-06
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		3e-06
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		3e-06
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-06
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		5e-06
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		6e-06
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		6e-06
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		2e-05
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		2e-05
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		2e-05
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		3e-05
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		4e-05
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		5e-05
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		5e-05
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		5e-05
2pg8_A	417	Crystal Structure Of R254k Mutanat Of Dpgc With Bou		7e-05
2np9_A	440	Crystal Structure Of A Dioxygenase In The Crotonase		7e-05
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		1e-04
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		1e-04
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		1e-04
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		1e-04
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		2e-04
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		2e-04

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/145 (48%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
           +  TCS +M+ I  HPVP++A+++G+A AAGCQLVA+CD+A+A+  S F+TPG   G+FC
Sbjct: 111 VFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFC 170
Query: 231 STPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILE 290
           STP VAL R VP  V   M  TG PISAQ+A   GL+++VV    EL+ ET  +   I  
Sbjct: 171 STPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVV-PEAELQEETMRIARKIAS 229
Query: 291 NSRSVLTLGKQFLYQQMSLNIEEAY 315
            SR V++LGK   Y+Q+  ++  AY
Sbjct: 230 LSRPVVSLGKATFYKQLPQDLGTAY 254

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 118/206 (57%), Gaps = 7/206 (3%)
Query: 114 EIFSTCSDLMLSILRHPVPILA----IISGVAAAAGCQLVATCDLAIATTASKFSTPGYN 169
           + F+  S+ ML+ L      LA    + + V AA+G    A  DL      ++ S   Y 
Sbjct: 45  QAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLK--EMRAEPSREYYE 102
Query: 170 ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF 229
            L + C+D+ML+I R P P++A + G+A AAGCQLVA CDLA+AT  ++F+  G   G+F
Sbjct: 103 KLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF 162
Query: 230 CSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAIL 289
           CSTP VAL+R V       M +TG  +SA DA   GL+ RVV+  + L+ E + + S I+
Sbjct: 163 CSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-KALDDEIEAMVSKIV 221
Query: 290 ENSRSVLTLGKQFLYQQMSLNIEEAY 315
              R+ + +GK   Y+Q+  +IE AY
Sbjct: 222 AKPRAAVAMGKALFYRQIETDIESAY 247

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
           L   CS L L +   P P +A++ G+A AAG QL A CDLA A+ A++F  PG ++G F 
Sbjct: 89  LFEACSALXLDLAHCPKPTIALVEGIATAAGLQLXAACDLAYASPAARFCLPGVQNGGFX 148
Query: 231 STPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILE 290
           +TPAVA++R +    V    +TG    A  A  AGLI R++     L +    L  A+  
Sbjct: 149 TTPAVAVSRVIGRRAVTEXALTGATYDADWALAAGLINRIL-PEAALATHVADLAGALAA 207
Query: 291 NSRSVLTLGKQFLYQQMSLNIEEAY 315
            +++ L  G + L + + L +E+AY
Sbjct: 208 RNQAPLRRGLETLNRHLELPLEQAY 232

>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From Escherichia Coli Length = 564

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 5   ESVPLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMXX 62
           ++ PLNY+ A+ AV+  + +N    +V EGANT+D  R+++    PR RLD GT+G M  
Sbjct: 366 DTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMGI 425
Query: 63  XXXXXXXXXXYCNHYAPGKRVVCVQGDSAFGFSGMELETL 102
                            G  VV ++GDSAFGFSGME+ET+
Sbjct: 426 GMGYAIGASVTS-----GSPVVAIEGDSAFGFSGMEIETI 460

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVV 246
           P++  I+G A   G +L   CD+ IA+  +KF+   AR G+  +   +V L +KV +G+ 
Sbjct: 94  PVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLA 153
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTL 298
           R M++TG  +SAQDA  AGL+T VV+ ++ L +  +V  S +  N ++V  L
Sbjct: 154 RRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRAL 205

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 12/191 (6%)
Query: 135 AIISGVAAAAGCQLVATCDLAIA--TTASKFSTPGYNILVSTCSDLMLS-----ILRHP- 186
           A+  G+AAAA  QL ++ DL++A  T A      G ++      + +LS         P 
Sbjct: 34  AVSQGLAAAAD-QLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTNVPP 92
Query: 187 -VPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLG 244
             PI+A + G A A G +LV +CDL +A  ++KF  P  + G+       + L  ++P  
Sbjct: 93  RKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQ 152
Query: 245 VVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLY 304
           V   + +TG   +A+DA   G I R+V   + L++  + L + I  N    +   K+ + 
Sbjct: 153 VAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALE-LAAKITANGPLAVAATKRIII 211
Query: 305 QQMSLNIEEAY 315
           +  S   EEA+
Sbjct: 212 ESASWAPEEAF 222

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVV 246
           P++  I+G A   G +L   CD+ IA+  ++F+   AR G+  +   +V L +KV +G+ 
Sbjct: 93  PVIGAINGAAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLA 152
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTL 298
           R M++TG  +SA DA  AGL+T VV  ++ L +   V  S +  N  +V  L
Sbjct: 153 RRMSLTGDYLSAADALRAGLVTEVVPHDQLLGAAQAVAASIVGNNQNAVRAL 204

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVV 246
           P++  I+G A   G +L   CD+ IA+  ++F+   AR G+  +   +V L +KV +G+ 
Sbjct: 110 PVIGAINGAAVTGGLELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLA 169
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTL 298
           R M++TG  +SA DA  AGL+T VV  ++ L +   V  S +  N  +V  L
Sbjct: 170 RRMSLTGDYLSAADALRAGLVTEVVPHDQLLGAARAVAASIVGNNQNAVRAL 221

>pdb|2C31|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase In Complex With The Cofactor Derivative Thiamin-2-Thiazolone Diphosphate And Adenosine Diphosphate Length = 568

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 13/99 (13%)
Query: 9   LNYYAAIHAVQ---VSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMXXXXX 65
           +NY  ++  V+   ++ PD   +V EGAN +D  R ++    PR RLD+GT+G M     
Sbjct: 375 MNYSNSLGVVRDFMLANPD-ISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMG 433
Query: 66  XXXXXXXYCNHYAP--GKRVVCVQGDSAFGFSGMELETL 102
                  YC   A   GK V+ V+GDSAFGFSGMELET+
Sbjct: 434 -------YCVAAAAVTGKPVIAVEGDSAFGFSGMELETI 465

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 136 IISGVAAA--AGCQLVATCDL--AIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILA 191
           II+G A A  AG  +    DL  A A TA  F+T G    V T             P +A
Sbjct: 54  IITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRT-------------PTIA 100
Query: 192 IISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVR 247
            ++G A   GC+L   CD+ IA   +KF  P  + G+    P +     LTR +      
Sbjct: 101 AVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVL---PGMGGSQRLTRAIGKAKAM 157
Query: 248 SMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQM 307
            + +TG  + A +A  +GL++RVV ++ +L +E +   + I + S S   + K+ + +  
Sbjct: 158 DLILTGRTMDAAEAERSGLVSRVVPAD-DLLTEARATATTISQMSASAARMAKEAVNRAF 216
Query: 308 SLNIEE 313
             ++ E
Sbjct: 217 ESSLSE 222

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 136 IISGVAAA--AGCQLVATCDL--AIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILA 191
           II+G A A  AG  +    DL  A A TA  F+T G    V T             P +A
Sbjct: 74  IITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRT-------------PTIA 120
Query: 192 IISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVR 247
            ++G A   GC+L   CD+ IA   +KF  P  + G+    P +     LTR +      
Sbjct: 121 AVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVL---PGMGGSQRLTRAIGKAKAM 177
Query: 248 SMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQM 307
            + +TG  + A +A  +GL++RVV ++ +L +E +   + I + S S   + K+ + +  
Sbjct: 178 DLILTGRTMDAAEAERSGLVSRVVPAD-DLLTEARATATTISQMSASAARMAKEAVNRAF 236
Query: 308 SLNIEE 313
             ++ E
Sbjct: 237 ESSLSE 242

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 136 IISGVAAA--AGCQLVATCDLAIAT--TASKFSTPGYNILVSTCSDLMLSILRHPVPILA 191
           II+G A A  AG  +    DL  A   TA  F+T G    V T             P +A
Sbjct: 53  IITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRT-------------PTIA 99
Query: 192 IISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVR 247
            ++G A   GC+L   CD+ IA   +KF  P  + G+    P +     LTR +      
Sbjct: 100 AVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVL---PGMGGSQRLTRAIGKAKAM 156
Query: 248 SMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQM 307
            + +TG  + A +A  +GL++RVV ++ +L +E +   + I + S S   + K+ + +  
Sbjct: 157 DLILTGRTMDAAEAERSGLVSRVVPAD-DLLTEARATATTISQMSASAARMAKEAVNRAF 215
Query: 308 SLNIEE 313
             ++ E
Sbjct: 216 ESSLSE 221

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRK 240
           I R   P++A ++G A   GC+L   CD+  A   ++F  P    G          LTR 
Sbjct: 91  ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRA 150
Query: 241 VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGK 300
           V   +   M +TG  ISAQDA  AGL++++    E L  E       I  NS+ ++ + K
Sbjct: 151 VGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNSKIIVAMAK 209
Query: 301 Q 301
           +
Sbjct: 210 E 210

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRK 240
           I R   P++A ++G A   GC+L   CD+  A   ++F  P    G          LTR 
Sbjct: 94  ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRA 153
Query: 241 VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGK 300
           V   +   M +TG  ISAQDA  AGL++++    E L  E       I  NS+ ++ + K
Sbjct: 154 VGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNSKIIVAMAK 212
Query: 301 Q 301
           +
Sbjct: 213 E 213

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRK 240
           I R   P++A ++G A   GC+L   CD+  A   ++F  P    G          LTR 
Sbjct: 93  ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRA 152
Query: 241 VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGK 300
           V   +   M +TG  ISAQDA  AGL++++    E L  E       I  NS+ ++ + K
Sbjct: 153 VGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNSKIIVAMAK 211
Query: 301 Q 301
           +
Sbjct: 212 E 212

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
           P++A ++G A   GC+L   CD+  A   ++F+ P    G          LTR V   + 
Sbjct: 125 PVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLA 184
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
             M +TG  ISAQDA  AGL++++    E L  E       I  NS+ V+ + K+
Sbjct: 185 MEMVLTGDRISAQDAKQAGLVSKICPV-ETLVEEAIQCAEKIASNSKIVVAMAKE 238

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
           P++A ++G A  AGC+L   CD+ +A   ++F  P    GI         L R V   + 
Sbjct: 97  PLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA 156
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306
             M ++G  I+AQ A  AGL++ V  S+  LE   + L S +  +S   L   KQ L Q 
Sbjct: 157 SKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQ-LASKMARHSPLALQAAKQALRQS 215
Query: 307 MSLNIE 312
             + ++
Sbjct: 216 QEVALQ 221

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVV 246
           P++A ++G     GC+++   D+ ++   + F  P  + G+     + V L R++P    
Sbjct: 104 PLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKA 163
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ 306
             M +TG P++A +AY+ GL+  VV +   L+ + + L   I+ N    +   K+ + + 
Sbjct: 164 MEMILTGEPLTAFEAYHFGLVGHVVPAGTALD-KARSLADRIVRNGPLAVRNAKEAIVRS 222
Query: 307 MSLNIEEA 314
             L  E+A
Sbjct: 223 GWLAEEDA 230

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
           L   +  +P P +A ++G A A G  L   CDL +    ++      + G   +  +V L
Sbjct: 86  LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARLGYTEVKIGFVAALVSVIL 145
Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
            R V     + + +TG  + A++A   GL+ R+    + LE E K L   + +N+ + L 
Sbjct: 146 VRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALE-EAKALAEEVAKNAPTSLR 204
Query: 298 LGKQFLYQQMSLNIEEAY 315
           L K+ L       +E+ +
Sbjct: 205 LTKELLLALPGXGLEDGF 222

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRKVPLGVV 246
           PI+A ++G A   GC+L   CDL IA   ++F  P    GI         LTR V     
Sbjct: 102 PIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKA 161
Query: 247 RSMTITGIPISAQDAYNAGLITRVVSSNEELES 279
             + +TG  ++A++A   GL++R+V + + L+ 
Sbjct: 162 MDLCLTGRSLTAEEAERVGLVSRIVPAADLLDE 194

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGV 245
           P P++A + G A   GC L   CDL +A  AS F     R G+     A AL   +PL +
Sbjct: 92  PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASAL---LPLLI 148
Query: 246 VRS----MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTS 286
            R+    M +T   ISA  A+  G+I+ + S++E     T VL S
Sbjct: 149 GRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRS 193

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 166 PGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR 225
           P  N+L     DL   I   P P++A+++G A   G  L   CDL IA   + F   G +
Sbjct: 91  PRLNVL-----DLQRLIRVIPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPK 145
Query: 226 HGIF-CSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
            G F     A  L R V     R +       +AQ+A   GL+ +VV   E+LE ET   
Sbjct: 146 VGSFDGGYGAGYLARIVGHKKAREIWYLCRQYTAQEALEMGLVNKVVPL-EQLEEETVKW 204
Query: 285 TSAILENSRSVLTL 298
              ILE S + +  
Sbjct: 205 AQEILEKSPTAIRF 218

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTR 239
           LSI++   P++A ++G+A   G +L  +CDL +A++A++F  P    G+    P    T+
Sbjct: 91  LSIVK--TPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVM---PGAGGTQ 145
Query: 240 KVP--LGVVRSMT--ITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
           ++   +G  R++    TG  +SA++A   G++ RVVS  E L  ET  L   + E     
Sbjct: 146 RLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSP-ELLMEETMRLAGRLAEQPPLA 204
Query: 296 LTLGKQ 301
           L L K+
Sbjct: 205 LRLIKE 210

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 143 AAGCQLVATCDLAIATT---ASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA 199
            AG    A  DL  AT       F    Y+    +  D +L   R   P++A + G A A
Sbjct: 72  GAGGYFCAGMDLKAATKKPPGDSFKDGSYD---PSRIDALLKGRRLKKPLIAAVEGPAIA 128
Query: 200 AGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVVRSMTITGIPISA 258
            G +++   D+ +A  ++KF    A+  ++     AV L R++P  V   + +TG  I+A
Sbjct: 129 GGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITA 188
Query: 259 QDAYNAGLITRVVSSNEELESETKVL 284
            +A   GL+  VV   + L   TK L
Sbjct: 189 AEAKEMGLVGHVVPDGQAL---TKAL 211

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA-LTRK 240
           I + P PI++++ G       +++ + DL IA + S FS      G+  +   +  LTR 
Sbjct: 92  IQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRD 151
Query: 241 VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               +V+ +  T  PI+AQ A   G++  VV   EELE  T  +   I E +
Sbjct: 152 AGFHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA 202

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVR 247
           P+L  ++G+   AG   V T D+ IA+  + F  P    G+      V ++R +P  +  
Sbjct: 112 PVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAGRELVRVSRVLPRSIAL 171
Query: 248 SMTITGI--PISAQDAYNAGLITRVVSSNEELESETKV 283
            M + G    +SAQ AY  GLI+ +V  +  LE   ++
Sbjct: 172 RMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEI 209

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTRKVPLGVV 246
           P +A ++G A   G +L    DL IA  ++ F  P  + G+      V  +  ++P  V 
Sbjct: 109 PTIAAVNGTALGGGSELALASDLVIACESASFGLPEVKRGLIAGAGGVFRIVEQLPRKVA 168
Query: 247 RSMTITGIPISAQDAYNAGLITRVV 271
             + +TG P++A DA   GLI  VV
Sbjct: 169 LELVLTGEPMTASDALRWGLINEVV 193

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL--- 237
           S LR   P++A ISG A A G +L   CDL +    +         G+FC    V L   
Sbjct: 96  SRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVL-------GVFCRRWGVPLIDG 148
Query: 238 -TRKVP--LGVVRSMT--ITGIPISAQDAYNAGLITRVVSSNEELES 279
            T ++P  +G  R+M   +TG P+ A +A + GL+ RVV+  +  E+
Sbjct: 149 GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREA 195

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
            +++L++ R   P++A I+G A   G  L   CD+ +A+  + F   G  +G+  S   +
Sbjct: 113 DEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGL 172
Query: 236 ALTRKVPLGVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
           +      +G  R+  I  TG  + A +A   GL++R V+S   LE E   +   I   SR
Sbjct: 173 SYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLE-ECYAIGERIAGFSR 231
Query: 294 SVLTLGKQFLY 304
             + L K+ ++
Sbjct: 232 PGIELTKRTIW 242

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           YN +V   S L         P++  ++GVAA AG  L    DL +A   + F+T   R G
Sbjct: 80  YNRVVEALSGL-------EKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIG 132
Query: 228 IFC-STPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTS 286
           +   S  +  L R V L   + + +    +SA++A   GL+ RVV + E+L  E   L  
Sbjct: 133 LVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPA-EKLMEEALSLAK 191
Query: 287 AILENSRSVLTLGKQFLYQQMSLNIEEA 314
            + +       L K+ L +   L++ EA
Sbjct: 192 ELAQGPTRAYALTKKLLLETYRLSLTEA 219

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 183 LRHPV--PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTR 239
           +RH +  P +A ++G A   G +L    DL +A   ++F  P  + G+  +   V  +  
Sbjct: 96  VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAE 155
Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS 273
           ++P  V   + +TG P+SA  A + GLI  VV +
Sbjct: 156 QLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEA 189

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 183 LRHPV--PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTR 239
           +RH +  P +A ++G A   G +L    DL +A   ++F  P  + G+  +   V  +  
Sbjct: 96  VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAE 155
Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS 273
           ++P  V   + +TG P+SA  A + GLI  VV +
Sbjct: 156 QLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEA 189

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 166 PGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR 225
           P  N+L     DL   I   P P++A++ G A   G  L   CDL IA   + F   G +
Sbjct: 92  PRLNVL-----DLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPK 146
Query: 226 HGIFCSTPAVA-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
            G F +      L R V     R +       +AQ+A + GL+  VV   E++E ET   
Sbjct: 147 VGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL-EKVEDETVQW 205
Query: 285 TSAILENSRSVLTLGK 300
              I+++S + L   K
Sbjct: 206 CKEIMKHSPTALRFLK 221

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 140 VAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSD---LMLSILRHPVPILAIISGV 196
           V A  G    A  DL+ A +    S+  Y++ V    +   LM +I+   +P++A I G 
Sbjct: 60  VLAHTGGTFCAGADLSEAGSGGSPSS-AYDMAVERAREMAALMRAIVESRLPVIAAIDGH 118
Query: 197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPI 256
             A G  LV  CD+A+A   S F+   AR G+  +  ++ L  K+         +TG   
Sbjct: 119 VRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKF 178
Query: 257 SAQDAYNAGLIT 268
            A+ A   GLIT
Sbjct: 179 DARRAEEIGLIT 190

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 67/178 (37%), Gaps = 19/178 (10%)
Query: 128 RHPVPILAIISGVAAAAGC-----QLVATCDLAIATTASKFSTPGY--NILVSTCSDLML 180
           + P   L II G    A C     ++++  + A    A  F    Y  N  V +C     
Sbjct: 47  QDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYXLNNAVGSCQK--- 103
Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRK 240
                  P +A+I G+    G  L       +AT    F+ P    G+F          +
Sbjct: 104 -------PYVALIHGITXGGGVGLSVHGQFRVATEKCLFAXPETAIGLFPDVGGGYFLPR 156
Query: 241 VPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE--ELESETKVLTSAILENSRSVL 296
           +   +   + +TG  +  +D Y AG+ T  V S +   LE +   L S   EN  SVL
Sbjct: 157 LQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAXLEEDLLALKSPSKENIASVL 214

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           + I       ++  I+R   P+LA I+GVAA  G  +    D+AI   ++KF       G
Sbjct: 82  FRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIG 141
Query: 228 IFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
           I   T  + +L R V +     + +T   +  ++A + GL++RV   +E  E   KV
Sbjct: 142 IGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKV 198

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           + I       ++  I+R   P+LA I+GVAA  G  +    D+AI   ++KF       G
Sbjct: 82  FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIG 141
Query: 228 IFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
           I   T  + +L R V +     + +T   +  ++A + GL++RV   +E  E   KV
Sbjct: 142 IGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKV 198

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           + I       ++  I+R   P+LA I+GVAA  G  +    D+AI   ++KF       G
Sbjct: 82  FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIG 141
Query: 228 IFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
           I   T  + +L R V +     + +T   +  ++A + GL++RV   +E  E   KV
Sbjct: 142 IGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYPKDEFREVAWKV 198

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTRKVPLG 244
           P+P++  I+G A  AG QL   CDL +    + F  P +++G+     ++  L+  V  G
Sbjct: 107 PMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHG 166
Query: 245 VVRSMTITGIPISAQDAYNAGLITRV--VSSNEELESETKVLTSAILENSRSVLT 297
             R+M ++   ++A+ A + G+  R+  ++  +   +E   L    +++++ VL 
Sbjct: 167 RARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKRVLN 221

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--- 242
           P P++A I+G+A   G +L   CD  IA  ++     G         P    T+++P   
Sbjct: 102 PQPVIAAINGIALGGGTELSLACDFRIAAESASL---GLTETTLAIIPGAGGTQRLPRLI 158
Query: 243 -LGVVRSMTITGIPISAQDAYNAGLITRVV 271
            +G  + +  TG  ISAQ+A   GL+  VV
Sbjct: 159 GVGRAKELIYTGRRISAQEAKEYGLVEFVV 188

>pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound Substrate Analog Length = 417

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVR 247
           P +A + G A   G QL+   D  +A++ + FS P A+ GI      + L R     V R
Sbjct: 275 PWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVSR 334
Query: 248 SMTITGIPISAQDAYNAGLITRVVSSNE---ELE-SETKVLTSAILENSR 293
            + + G  I A++     L+  VV  +E    +E S T++   A+L N R
Sbjct: 335 QVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDGDAVLANRR 384

>pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase Superfamily Length = 440

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVR 247
           P +A + G A   G QL+   D  +A++ + FS P A+ GI      + L R     V R
Sbjct: 286 PWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVSR 345
Query: 248 SMTITGIPISAQDAYNAGLITRVVSSNE---ELE-SETKVLTSAILENSR 293
            + + G  I A++     L+  VV  +E    +E S T++   A+L N R
Sbjct: 346 QVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDGDAVLANRR 395

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           D  L     P P +A + G   + G  L   CDL +A+  + FS P A  GI        
Sbjct: 111 DYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILASDDALFSDPVALMGI-GGVEYHG 169
Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
            T ++     + +  TG  ++A++A   G++ RVV+ + EL+++T+ L   I
Sbjct: 170 HTWELGPRKAKEILFTGRALTAEEAERTGMVNRVVARD-ELDAQTRELAEQI 220

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
           S +MLS      P++A +SG A A G +L   CDL +A   + F       G+FC    V
Sbjct: 93  SRMMLS-----KPVIAAVSGYAVAGGLELALWCDLRVAEQDAVF-------GVFCRRWGV 140
Query: 236 AL----TRKVP--LGVVRSMT--ITGIPISAQDAYNAGLITRVVSSNE 275
            L    T ++P  +G  R+M   +TG  + A +A   GL  RVV + +
Sbjct: 141 PLIDGGTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLANRVVPNGQ 188

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAV 235
           D    I   P P++A+++G +   G  L   CDL IA   + F   G + G F     A 
Sbjct: 114 DFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGAS 173
Query: 236 ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
            + R V     R +        A+ A + GL+  VV    +LE ET      +L+NS
Sbjct: 174 YMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREMLQNS 229

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAV 235
           D    I   P P++A+++G +   G  L   CDL IA   + F   G + G F     A 
Sbjct: 110 DFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGAS 169
Query: 236 ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
            + R V     R +        A+ A + GL+  VV    +LE ET      +L+NS
Sbjct: 170 YMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREMLQNS 225

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTPAV 235
           D    I   P P++A ++G +   G  L   CDL IA   + F   G + G F     A 
Sbjct: 113 DFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLTIAAENAIFGQTGPKVGSFDGGWGAS 172
Query: 236 ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
              R V     R +        AQ A + GL+  VV    +LE ET       L+NS   
Sbjct: 173 YXARIVGQKKAREIWFLCRQYDAQQALDXGLVNTVVPL-ADLEKETVRWCREXLQNSPXA 231
Query: 296 L 296
           L
Sbjct: 232 L 232

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALT 238
           +L I   P   +A+I+G A   G  ++  CD  IA   +KF     + GI   +P +  +
Sbjct: 94  VLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGI---SPDLGAS 150
Query: 239 RKVP--LGVVRSMT--ITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILE 290
             +P  +G  ++M   + G   ++++A   GLI  +  + +EL+   K    A+ E
Sbjct: 151 YFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSE 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	2e-50
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	1e-49
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	2e-48
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	1e-36
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	4e-36
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	2e-33
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	4e-26
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	1e-08
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	4e-25
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	3e-23
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-07
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	5e-22
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	9e-22
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	2e-21
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-21
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	8e-20
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	9e-20
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	3e-06
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	1e-19
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	1e-07
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	2e-19
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	5e-19
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	5e-06
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	6e-19
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	9e-06
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	1e-18
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	7e-07
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	1e-18
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	3e-18
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	2e-07
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	6e-18
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	1e-05
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	7e-18
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	4e-06
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	7e-18
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	5e-04
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	1e-17
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-17
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-06
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	2e-17
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	2e-17
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	3e-17
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	2e-07
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	3e-17
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	3e-17
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	5e-17
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	4e-05
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	6e-17
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	7e-06
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	6e-17
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	4e-05
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	8e-17
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	8e-17
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	2e-05
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-16
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	9e-08
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	1e-16
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	1e-16
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	1e-06
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-16
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	1e-06
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	2e-16
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	2e-16
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	3e-16
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	4e-16
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	7e-16
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	1e-15
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	3e-05
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	2e-15
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	3e-15
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	3e-15
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	4e-15
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	8e-04
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	5e-15
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	5e-15
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	8e-15
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	1e-14
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	3e-14
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	8e-14
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	1e-13
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	2e-13
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	2e-13
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	3e-13
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	7e-13
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	8e-13
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	9e-13
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-12
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	4e-12
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	7e-12
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-11
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	4e-11
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	5e-11
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	1e-07
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	1e-07
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	1e-06
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	2e-06
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	2e-05
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	2e-05
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	3e-05
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	5e-05
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	5e-05
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	6e-05
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	9e-05
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	1e-04
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	1e-04
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	2e-04
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	4e-04
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	6e-04
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	6e-04
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	7e-04

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  167 bits (426), Expect = 2e-50
 Identities = 70/148 (47%), Positives = 98/148 (66%), Gaps = 1/148 (0%)

Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           +  +  TCS +M+ I  HPVP++A+++G+A AAGCQLVA+CD+A+A+  S F+TPG   G
Sbjct: 108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVG 167

Query: 228 IFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
           +FCSTP VAL R VP  V   M  TG PISAQ+A   GL+++VV    EL+ ET  +   
Sbjct: 168 LFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPE-AELQEETMRIARK 226

Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
           I   SR V++LGK   Y+Q+  ++  AY
Sbjct: 227 IASLSRPVVSLGKATFYKQLPQDLGTAY 254

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  165 bits (420), Expect = 1e-49
 Identities = 65/148 (43%), Positives = 94/148 (63%), Gaps = 1/148 (0%)

Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
           Y  L + C+D+ML+I R P P++A + G+A AAGCQLVA CDLA+AT  ++F+  G   G
Sbjct: 101 YEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVG 160

Query: 228 IFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
           +FCSTP VAL+R V       M +TG  +SA DA   GL+ RVV+  + L+ E + + S 
Sbjct: 161 LFCSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-KALDDEIEAMVSK 219

Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
           I+   R+ + +GK   Y+Q+  +IE AY
Sbjct: 220 IVAKPRAAVAMGKALFYRQIETDIESAY 247

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  162 bits (411), Expect = 2e-48
 Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 153 DLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI 212
           ++                L   CS LML +   P P +A++ G+A AAG QL+A CDLA 
Sbjct: 71  EIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAY 130

Query: 213 ATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS 272
           A+ A++F  PG ++G FC+TPAVA++R +    V  M +TG    A  A  AGLI R++ 
Sbjct: 131 ASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILP 190

Query: 273 SNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
               L +    L  A+   +++ L  G + L + + L +E+AY
Sbjct: 191 E-AALATHVADLAGALAARNQAPLRRGLETLNRHLELPLEQAY 232

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  131 bits (332), Expect = 1e-36
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 3/141 (2%)

Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
            + LM +I+   +P++A I G   A G  LV  CD+A+A   S F+   AR G+  +  +
Sbjct: 97  MAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIIS 156

Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
           + L  K+         +TG    A+ A   GLIT      E+L++    L + +   S  
Sbjct: 157 LTLLPKLSARAAARYYLTGEKFDARRAEEIGLITMAA---EDLDAAIDQLVTDVGRGSPQ 213

Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
            L   K      +    +   
Sbjct: 214 GLAASKALTTAAVLERFDRDA 234

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  129 bits (328), Expect = 4e-36
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 1/162 (0%)

Query: 153 DLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI 212
           DL    + + F+            +LM SI + P P +A++ G A   G  L A CD+AI
Sbjct: 66  DLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAI 125

Query: 213 ATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVS 272
           A+T+++F     + G+  +  +  + R +     + + ++     A  AY+  L+   V 
Sbjct: 126 ASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVP 185

Query: 273 SNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
             + L   T    S I  N+   +   KQ      +  I+E 
Sbjct: 186 D-DTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEE 226

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  122 bits (309), Expect = 2e-33
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
             DL + +   P   ++ + G   A G   V+  D+AIA   + FS      G++ +   
Sbjct: 89  LYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVL 148

Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
             L R++       MT+   PIS Q+A   GLI        E +   +     +   ++ 
Sbjct: 149 PFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFD---AESDVLLRKHLLRLRRLNKK 205

Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
            +   KQ     +   +  A 
Sbjct: 206 GIAHYKQ-FMSSLDHQVSRAK 225

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  103 bits (258), Expect = 4e-26
 Identities = 24/141 (17%), Positives = 39/141 (27%), Gaps = 3/141 (2%)

Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
              L+  +   P   LA+  G    AG  L A C     T  + F  PG + G+   T  
Sbjct: 87  IEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTR- 145

Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
                 V      S+  +     A +A   G +    +   +  +       A      +
Sbjct: 146 -RFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQ-AQWPALIDAAAEAATALDPA 203

Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
                 + L          A 
Sbjct: 204 TRATLHRVLRDDHDDADLAAL 224

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 14/57 (24%), Positives = 18/57 (31%)

Query: 114 EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
                   L+  +   P   LA+  G    AG  L A C     T  + F  PG   
Sbjct: 82  LRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKF 138

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  100 bits (251), Expect = 4e-25
 Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 174 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP 233
           +   L   +  +P P +A ++G A A G  L   CDL +    ++      + G   +  
Sbjct: 82  SLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV 141

Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
           +V L R V     + + +TG  + A++A   GL+ R+     +   E K L   + +N+ 
Sbjct: 142 SVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAKNAP 200

Query: 294 SVLTLGKQFLYQQMSLNIEEAY 315
           + L L K+ L     + +E+ +
Sbjct: 201 TSLRLTKELLLALPGMGLEDGF 222

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 96.8 bits (241), Expect = 3e-23
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 3/133 (2%)

Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
                 S++    P +  I G   A G  +    D  IA   +K   P  R     +   
Sbjct: 146 FVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG- 204

Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
                ++     + +  TG  I+   A   GL         +L++ T+ L   I     +
Sbjct: 205 -LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAP-DPADLDARTERLVERIAAMPVN 262

Query: 295 VLTLGKQFLYQQM 307
            L + K      +
Sbjct: 263 QLIMAKLACNTAL 275

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 11/52 (21%), Positives = 17/52 (32%)

Query: 119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNI 170
                 S++    P +  I G   A G  +    D  IA   +K   P   +
Sbjct: 146 FVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRV 197

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 92.3 bits (230), Expect = 5e-22
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           +  L     P P +A + G   + G  L   CDL IA   + FS P     I        
Sbjct: 108 EYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHG 166

Query: 237 LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVL 296
            T ++     + +  TG  ++A++    G++ RVV   + L++ET+ L   I +     L
Sbjct: 167 HTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPR-DRLDAETRALAGEIAKMPPFAL 225

Query: 297 TLGKQFLYQQM 307
              K+ + Q +
Sbjct: 226 RQAKRAVNQTL 236

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Length = 568

 Score = 94.5 bits (236), Expect = 9e-22
 Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 7/102 (6%)

Query: 4   DESVPLNYYAAIHAVQVSI--PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
             S  +NY  ++  V+  +    +  +V EGAN +D  R ++    PR RLD+GT+G MG
Sbjct: 370 TPSGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMG 429

Query: 62  VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           +G+G+ +AAA        GK V+ V+GDSAFGFSGMELET+ 
Sbjct: 430 IGMGYCVAAAA-----VTGKPVIAVEGDSAFGFSGMELETIC 466

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Length = 564

 Score = 93.8 bits (234), Expect = 2e-21
 Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 7/102 (6%)

Query: 4   DESVPLNYYAAIHAVQVSI--PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
            ++ PLNY+ A+ AV+  +    +  +V EGANT+D  R+++    PR RLD GT+G MG
Sbjct: 365 TDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMG 424

Query: 62  VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           +G+G+A+ A++       G  VV ++GDSAFGFSGME+ET+ 
Sbjct: 425 IGMGYAIGASV-----TSGSPVVAIEGDSAFGFSGMEIETIC 461

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 91.4 bits (227), Expect = 3e-21
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KFSTPGARHGIFCSTPAV 235
           ++   I   P  ++ +++G AA  G  L   CDL +A+    +F    A  G F      
Sbjct: 158 EVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGS 217

Query: 236 A-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
           A L R+V     R +   G   +A+  +  G +  V     ELE+      + I   S  
Sbjct: 218 AYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-AELETVGLQWAAEINAKSPQ 276

Query: 295 VLTLGKQ 301
              + K 
Sbjct: 277 AQRMLKF 283

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 86.5 bits (215), Expect = 8e-20
 Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 3/141 (2%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           +          P+L  ++G+   AG   V T D+ IA+  + F  P    G+      V 
Sbjct: 101 EGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVAGRELVR 160

Query: 237 LTRKVPLGVVRSMTITG--IPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
           ++R +P  +   M + G    +SAQ AY  GLI+ +V   + L      +   +  N+  
Sbjct: 161 VSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEH-DRLLERAHEIADIVNSNAPL 219

Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
            +   +  + + +++ + EA 
Sbjct: 220 AVRGTRLAILKGLNVPLHEAE 240

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score = 86.1 bits (214), Expect = 9e-20
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 7/142 (4%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
             +L I   P   +A+I+G A   G  ++  CD  IA   +KF     + GI   +P + 
Sbjct: 92  HCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGI---SPDLG 148

Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               L R +      ++ + G   ++++A   GLI  +  + +EL+   K    A+ E  
Sbjct: 149 ASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGY 208

Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
              +   K+ L  + +  +++ 
Sbjct: 209 VPAIAATKKLLKGKAAEELKQQ 230

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK 162
               +   +L E+    +  +L I   P   +A+I+G A   G  ++  CD  IA   +K
Sbjct: 74  CASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAK 133

Query: 163 FSTP 166
           F   
Sbjct: 134 FLEN 137

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 85.7 bits (213), Expect = 1e-19
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
            ++ ++   P P++A + GVAA AG  L    D  +A  +++F+    R G+   +    
Sbjct: 104 QVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGL---SGGDM 160

Query: 237 -----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
                L R V LG    + + G  + A +A   GLI+ +       +   + L   + + 
Sbjct: 161 GAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEE-GRADEAARTLARRLADG 219

Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
                   K  L  ++ + +  A
Sbjct: 220 PALAHAQTKALLTAELDMPLAAA 242

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 67  ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRP--KLDEIFSTCSDLM 123
            L   L         R + + G    F  SG +++ +          +L +       ++
Sbjct: 48  DLRDLLAELSRRRAVRALVLAGEGRGFC-SGGDVDEIIGATLSMDTARLLDFNRMTGQVV 106

Query: 124 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
            ++   P P++A + GVAA AG  L    D  +A  +++F+  
Sbjct: 107 RAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFL 149

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           DL   IL   +PI+A + G +   G  L    D  + +  S ++T   ++G    TP  A
Sbjct: 81  DLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGF---TPVGA 137

Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               L  K+   + + M  TG     ++    G+   VVS  +++ +  + L   I ++ 
Sbjct: 138 TSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSR-QDVLNYAQQLGQKIAKSP 196

Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
           R  L   KQ L   +     EA
Sbjct: 197 RLSLVALKQHLSADIKAKFPEA 218

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 84.3 bits (209), Expect = 5e-19
 Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTP 233
           + + + ++   PI+  ++G A   G  ++  CDL  A   + F TP    G     CS+ 
Sbjct: 110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSS- 168

Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
            +   + +       M I G  ++A++A   GL+++V  +      E  +    +   + 
Sbjct: 169 -ITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELASYNP 226

Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
            VL   K  +   + L +E+A
Sbjct: 227 IVLEECKALVRCNIKLELEQA 247

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           + + + ++   PI+  ++G A   G  ++  CDL  A   + F TP
Sbjct: 110 NFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTP 155

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 83.4 bits (207), Expect = 6e-19
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 6/141 (4%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTP 233
           + + + ++   PI+  ++G A   G  ++  CD+  A   + F TP    G     CST 
Sbjct: 92  NFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCST- 150

Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
            V   + +       M ++G  ++AQ+A   GL+++V         E  V    +   + 
Sbjct: 151 -VMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWP-GTFTQEVMVRIKELASCNP 208

Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
            VL   K  +   M + +E+A
Sbjct: 209 VVLEESKALVRCNMKMELEQA 229

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 45.2 bits (108), Expect = 9e-06
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           + + + ++   PI+  ++G A   G  ++  CD+  A   + F TP
Sbjct: 92  NFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP 137

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTP 233
           + +   +  P P++A+++G A      L+   D   A+  + F TP +  G     CS+ 
Sbjct: 112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSS- 170

Query: 234 AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
                + +       M I G  ++A +A   GL+T V       + E      A  +   
Sbjct: 171 -YTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAKLPP 228

Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
           + L + K+ + ++    +   
Sbjct: 229 NALRISKEVIRKREREKLHAV 249

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           + +   +  P P++A+++G A      L+   D   A+  + F TP
Sbjct: 112 EFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTP 157

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 9/143 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           +++L++ R   P++A I+G A   G  L   CD+ +A+  + F   G  +G+   T +  
Sbjct: 114 EVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGL---TASEL 170

Query: 237 -----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
                L R +       + +TG  + A +A   GL++R V+S E L  E   +   I   
Sbjct: 171 GLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVAS-ESLLEECYAIGERIAGF 229

Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
           SR  + L K+ ++  +     E+
Sbjct: 230 SRPGIELTKRTIWSGLDAASLES 252

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 81.1 bits (201), Expect = 6e-18
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 10/142 (7%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
           +++L + R  +P++A ++G A   GC LVA  D+      +  + P  + G+        
Sbjct: 113 EIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGL---VAADG 169

Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
             +     + L + +   +TG  ISAQ A   GL   V    ++  +E       ILE  
Sbjct: 170 GPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA---DDPVAEAIACAKKILELP 226

Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
           +  +   K+ L   +   +  +
Sbjct: 227 QQAVESTKRVLNIHLERAVLAS 248

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           +++L + R  +P++A ++G A   GC LVA  D+      +  + P
Sbjct: 113 EIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADP 158

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score = 80.7 bits (200), Expect = 7e-18
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 8/141 (5%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA- 236
           +M ++     P++A ++G AA AG  L   CD  + +  + F+      G+    P    
Sbjct: 86  MMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGL---VPDAGH 142

Query: 237 ---LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSR 293
              L R V       + + G  ++A++A   GL T+V+    + E E K     +     
Sbjct: 143 LYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVI-PLSDWEEEVKQFAERLSAMPT 201

Query: 294 SVLTLGKQFLYQQMSLNIEEA 314
             + L K+ L +      +  
Sbjct: 202 KAIGLIKRLLRESEETTFDRY 222

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           +M ++     P++A ++G AA AG  L   CD  + +  + F+  
Sbjct: 86  MMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPA 130

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 80.3 bits (199), Expect = 7e-18
 Identities = 42/142 (29%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
           D+         P++  I+G A   G +L   CD+ IA+  +KF+   AR G+    P   
Sbjct: 83  DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLM---PTWG 139

Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
            +V L +KV +G+ R M++TG  +SAQDA  AGL+T VV+  ++L +  + + ++I+ N+
Sbjct: 140 LSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAH-DDLLTAARRVAASIVGNN 198

Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
           +  +       ++  +L    A
Sbjct: 199 QKAVRALLDSYHRIDALQTGGA 220

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           D+         P++  I+G A   G +L   CD+ IA+  +KF+  
Sbjct: 83  DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADT 128

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 8/163 (4%)

Query: 156 IATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT 215
           +A   ++ + P ++        L+ ++   P P++  ++G+    G  ++   DLA  ++
Sbjct: 69  LAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSS 128

Query: 216 ASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVV 271
            ++   P    G+    P  A    L + V       + ++   I A++A   GL+ R+ 
Sbjct: 129 TARLKCPFTSLGV---APEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRIC 185

Query: 272 SSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
           S  EEL  E +     +     S L   K  + +     I  A
Sbjct: 186 SP-EELLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAA 227

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score = 79.9 bits (198), Expect = 1e-17
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 2/139 (1%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
            ++ +I   P P++A + G A   GC L   CDL +A  AS F     R G+     A A
Sbjct: 83  RVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASA 142

Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
            L   +       M +T   ISA  A+  G+I+ +  S +E ES    +  ++       
Sbjct: 143 LLPLLIGRARTSRMAMTAEKISAATAFEWGMISHIT-SADEYESVLTDVLRSVSGGPTLA 201

Query: 296 LTLGKQFLYQQMSLNIEEA 314
               K+ L       +E  
Sbjct: 202 FGWTKRALAAATLAELEPV 220

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
            ++ +I   P P++A + G A   GC L   CDL +A  AS F   
Sbjct: 83  RVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLA 128

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 78.8 bits (195), Expect = 2e-17
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 3/146 (2%)

Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT-ASKFSTPGARHGIF 229
           LV+  S L   +L HP PI+    G A A G  L+ + D  I             + G+ 
Sbjct: 79  LVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMT 138

Query: 230 CSTPAVA-LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAI 288
                +     ++         I       + A  AG + +VVS  EEL+     + + +
Sbjct: 139 MHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSV-EELQGAALAVAAQL 197

Query: 289 LENSRSVLTLGKQFLYQQMSLNIEEA 314
            + + +     K  + + +   ++ A
Sbjct: 198 KKINMNAHKKTKLKVRKGLLDTLDAA 223

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 79.5 bits (197), Expect = 2e-17
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           DL   I   P P++A++ G A   G  L   CDL IA   + F   G + G F    A  
Sbjct: 98  DLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSF---DAGY 154

Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               L R V     R +       +AQ+A + GL+  VV   E++E ET      I+++S
Sbjct: 155 GSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL-EKVEDETVQWCKEIMKHS 213

Query: 293 RSVLTLGKQ 301
            + L   K 
Sbjct: 214 PTALRFLKA 222

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 79.1 bits (196), Expect = 3e-17
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
           DL+L  L  P P++A +  VA  AG  L    D+A+    ++      R G+        
Sbjct: 95  DLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGV---AAGDH 151

Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
             +     V +   +   +   P++ ++A   GL+   V   E++  +   +   + +  
Sbjct: 152 AVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQGP 210

Query: 293 RSVLTLGKQFLYQQMSLNIEE 313
           +  L   K  L       +  
Sbjct: 211 KEALHHTKHALNHWYRSFLPH 231

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 67  ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
            LA          G R V ++G    F  +G     +   +     L  +F    DL+L 
Sbjct: 41  GLARVWRDLEAVEGVRAVLLRGEGGVFS-AGGSFGLIEEMRASHEALLRVFWEARDLVLG 99

Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
            L  P P++A +  VA  AG  L    D+A+    ++    
Sbjct: 100 PLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDG 140

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 10/141 (7%)

Query: 180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA--- 236
            S LR   P++A ISG A A G +L   CDL +    +       R G+    P +    
Sbjct: 95  PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGV----PLIDGGT 150

Query: 237 --LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
             L R +       + +TG P+ A +A + GL+ RVV+  +  E   + L + I    + 
Sbjct: 151 IRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQARE-AAETLAAEIAAFPQQ 209

Query: 295 VLTLGKQFLYQQMSLNIEEAY 315
            +   +     Q  +  E A 
Sbjct: 210 CVRADRDSAIAQWGMAEEAAL 230

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 8/129 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           DL   I   P  ++A+++G A   G  L   CDL IA   + F   G + G F       
Sbjct: 100 DLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSF---DGGF 156

Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               L R V     R +       SAQ+A   G++  VV   + LE E       IL  S
Sbjct: 157 GSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPV-DRLEEEGIQWAKEILSKS 215

Query: 293 RSVLTLGKQ 301
              +   K 
Sbjct: 216 PLAIRCLKA 224

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 77.6 bits (192), Expect = 5e-17
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 8/142 (5%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           +L   +L +P P++   +G A A G  L+ + D  +A  A          G+   T   A
Sbjct: 86  ELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGM---TIPYA 142

Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               L  ++     +           + A  AG I  +    E + S  +         +
Sbjct: 143 AMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLP-EVVLSRAEEAAREFAGLN 201

Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
           +      K     +    I   
Sbjct: 202 QQAHNATKLRARAEALKAIRAG 223

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           +L   +L +P P++   +G A A G  L+ + D  +A  A      
Sbjct: 86  ELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQAN 131

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score = 78.0 bits (193), Expect = 6e-17
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA- 236
           ++  I+R   P+LA I+GVAA  G  +    D+AI   ++KF       GI       A 
Sbjct: 92  MIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGI---GNDTAT 148

Query: 237 ---LTRKVPLGVVRSM--TITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
              L R V  G+ R+M   +T   +  ++A + GL++RV    +E       +   +   
Sbjct: 149 SYSLARIV--GMRRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAAA 205

Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
              +  + K+  +      +EE 
Sbjct: 206 PTHLQVMAKERFHAGWMQPVEEC 228

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           ++  I+R   P+LA I+GVAA  G  +    D+AI   ++KF   
Sbjct: 92  MIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCA 136

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 78.0 bits (193), Expect = 6e-17
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 7/141 (4%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTPA 234
           +  +      P++A ++G A   G  L    D+ I     +++ P  R G+     +   
Sbjct: 90  VQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAH-- 147

Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
             L R V   V   + +TG   SAQ A   GL  R + +  ++      +   I  N   
Sbjct: 148 WTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPA-GKVLGAALRMAHDIATNVAP 206

Query: 295 V-LTLGKQFLYQQMSLNIEEA 314
               L K+ L+      +  A
Sbjct: 207 ESAALTKRLLWDAQMTGMSAA 227

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 95  SGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDL 154
           SG ++   A         D   S    +  +      P++A ++G A   G  L    D+
Sbjct: 66  SGAQISAAAETFAAPRNPDFSASP---VQPAAFELRTPVIAAVNGHAIGIGMTLALHADI 122

Query: 155 AIATTASKFSTP 166
            I     +++ P
Sbjct: 123 RILAEEGRYAIP 134

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 78.0 bits (193), Expect = 8e-17
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           D    I   P P++A+++G +   G  L   CDL IA   + F   G + G F       
Sbjct: 114 DFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSF---DGGW 170

Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               + R V     R +        A+ A + GL+  VV    +LE ET      +L+NS
Sbjct: 171 GASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREMLQNS 229

Query: 293 RSVLTLGKQ 301
              L   K 
Sbjct: 230 PMALRCLKA 238

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTPA 234
               +     P++A I+G     G      CD+  A   +KF+   AR G+   F  +  
Sbjct: 122 PPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGIS-- 179

Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
             L R     V   + ++G    A++A   GL+  VV+  E+L          I      
Sbjct: 180 WILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-EQLMPRALEYAEDIARYCSP 238

Query: 295 V-LTLGKQFLYQQMSLNIEEA 314
             + + K+ +Y   + ++ EA
Sbjct: 239 SSMAVIKRQVYGDATRDVVEA 259

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
               +     P++A I+G     G      CD+  A   +KF+  
Sbjct: 122 PPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAV 166

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI---FCSTPA 234
           L+ S  R   P++  + GVA   G  ++   DL  A   + F  P    G+     ++  
Sbjct: 91  LLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGAS-- 148

Query: 235 VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRS 294
             L ++        +  T    +A+ A  AGL+  +V   E+  +  +     +     +
Sbjct: 149 QLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIV---EDAYATAQATAQHLTALPLA 205

Query: 295 VLTLGKQFLYQQM 307
            L   K  +   +
Sbjct: 206 SLKQTKALMKHDL 218

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score = 51.4 bits (124), Expect = 9e-08
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 67  ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
            +A AL         RVV ++G +  F  +G +++      +              L+ S
Sbjct: 36  WIAKALDEADQNKDVRVVVLRGAEHDFT-AGNDMKDFMGFVQNPNAGPAGQVPPFVLLKS 94

Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
             R   P++  + GVA   G  ++   DL  A   + F  P
Sbjct: 95  AARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIP 135

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA- 234
             L  +      P++A + G A A G +L    DL +A   S F  P  + G+       
Sbjct: 92  RGLGFTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLV---AGG 148

Query: 235 ---VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
              + L  ++P  +   + +TG  +SA+ A+  G++  +             L   I  N
Sbjct: 149 GGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEP-GAALDAAIALAEKITAN 207

Query: 292 SRSVLTLGKQFLYQQMSLNIEEAY 315
               +   K+ + +    +++  +
Sbjct: 208 GPLAVAATKRIITESRGWSLDTRF 231

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 23/156 (14%), Positives = 44/156 (28%), Gaps = 11/156 (7%)

Query: 168 YNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KFSTPGARH 226
            +  V+    +  + ++H   ++  ++G A      LVA CD+  +         P A  
Sbjct: 94  VSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANL 153

Query: 227 GI---FCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKV 283
           G+     +T  V+L  K          +   P         G I++  +           
Sbjct: 154 GLITEGGTT--VSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNA 211

Query: 284 LTSAIL-----ENSRSVLTLGKQFLYQQMSLNIEEA 314
                L               K+ L         +A
Sbjct: 212 KVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKA 247

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 105 DKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KF 163
             E    +    +    +  + ++H   ++  ++G A      LVA CD+  +       
Sbjct: 87  PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYL 146

Query: 164 STP 166
             P
Sbjct: 147 LYP 149

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 25/133 (18%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--- 233
           DL+L+++    P+++ I G A  AG  +    D+++A+  +K      + G+        
Sbjct: 98  DLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGV---AAGDH 154

Query: 234 -AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
            A+     V +   +   +T   +S ++A   GL++  V  ++E+      L   + + +
Sbjct: 155 AAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCV-DDDEVLPTATRLAENLAQGA 213

Query: 293 RSVLTLGKQFLYQ 305
           ++ +   K+ L  
Sbjct: 214 QNAIRWTKRSLNH 226

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 67  ALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLS 125
            LA         P  RVV V+G   AF  SG   E +            I     DL+L+
Sbjct: 44  DLADVWPVIDRDPDVRVVLVRGEGKAFS-SGGSFELIDETIGDYEGRIRIMREARDLVLN 102

Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           ++    P+++ I G A  AG  +    D+++A+  +K    
Sbjct: 103 LVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDG 143

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 8/142 (5%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV- 235
                +  +  P +A+++G     G   +  CDLAI    + F       GI    P   
Sbjct: 97  WQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIP---PGNL 153

Query: 236 ---ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
              A+   V         +TG     Q A   GL+   V    +L   T  L   +LE +
Sbjct: 154 VSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPL-AQLREVTIELARNLLEKN 212

Query: 293 RSVLTLGKQFLYQQMSLNIEEA 314
             VL   K    +   L  E+ 
Sbjct: 213 PVVLRAAKHGFKRCRELTWEQN 234

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 8/132 (6%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPL 243
           PI+A + G A A G +LV +CDL +A  ++KF  P  + G+            L  ++P 
Sbjct: 95  PIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLV---AGAGGLLRLPNRIPY 151

Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
            V   + +TG   +A+DA   G I R+V    +       L + I  N    +   K+ +
Sbjct: 152 QVAMELALTGESFTAEDAAKYGFINRLVDD-GQALDTALELAAKITANGPLAVAATKRII 210

Query: 304 YQQMSLNIEEAY 315
            +  S   EEA+
Sbjct: 211 IESASWAPEEAF 222

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 75.6 bits (187), Expect = 3e-16
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 1/159 (0%)

Query: 156 IATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT 215
                    +      +    DL  ++L    P +A + G A   G Q     D  +  +
Sbjct: 64  FNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAS 123

Query: 216 ASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE 275
            + F  P  +HGI CS  A  L        ++ +      + A    +  L+ +VV S  
Sbjct: 124 TANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-S 182

Query: 276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
            L          +     S     K+ + +     +E+ 
Sbjct: 183 ALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQT 221

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 76.1 bits (188), Expect = 4e-16
 Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 17/190 (8%)

Query: 133 ILAII---SGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPI 189
           I   I   +G    AG       DL  AT      +        +  D +L   R   P+
Sbjct: 65  IRCCILTGAGGYFCAGM------DLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPL 118

Query: 190 LAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTRKVPLGV 245
           +A + G A A G +++   D+ +A  ++KF    A+  ++   P     V L R++P  V
Sbjct: 119 IAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLY---PMGGSAVRLVRQIPYTV 175

Query: 246 VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQ 305
              + +TG  I+A +A   GL+  VV    +  ++   +   I  N    +    + + +
Sbjct: 176 ACDLLLTGRHITAAEAKEMGLVGHVVPD-GQALTKALEIAEIIAANGPLAVQAILRTIRE 234

Query: 306 QMSLNIEEAY 315
              ++  EA+
Sbjct: 235 TEGMHENEAF 244

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 75.2 bits (186), Expect = 7e-16
 Identities = 51/245 (20%), Positives = 93/245 (37%), Gaps = 41/245 (16%)

Query: 95  SGMELETLAVDKEG--------RPK---------LDEIFSTCSDLMLSILRHPVPILAII 137
           S      L V+++G        RP          + +  +         + H   I A I
Sbjct: 4   SMSAARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAA-----WDEIDHDDGIRAAI 58

Query: 138 ---SGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS 194
              +G A   G       DL+        S P  +   +T    +L       P++A ++
Sbjct: 59  LTGAGSAYCVG----G--DLSDGWMVRDGSAPPLD--PATIGKGLLLSHTLTKPLIAAVN 110

Query: 195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTRKVPLGVVRSMT 250
           G     GC+++   D+ ++   + F  P  + G+    P     V L R++P      M 
Sbjct: 111 GACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLV---PGAGSMVRLKRQIPYTKAMEMI 167

Query: 251 ITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLN 310
           +TG P++A +AY+ GL+  VV +      + + L   I+ N    +   K+ + +   L 
Sbjct: 168 LTGEPLTAFEAYHFGLVGHVVPA-GTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWLA 226

Query: 311 IEEAY 315
            E+A 
Sbjct: 227 EEDAR 231

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 12/138 (8%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
           +L  ++   P+P++  I+G A  AG QL   CDL +    + F  P +++G+        
Sbjct: 98  ELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGL---ALDNW 154

Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               L+  V  G  R+M ++   ++A+ A + G+  R+        ++ +   + I   +
Sbjct: 155 SIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIG-----TLADAQAWAAEIARLA 209

Query: 293 RSVLTLGKQFLYQQMSLN 310
              +   K+ L    ++ 
Sbjct: 210 PLAIQHAKRVLNDDGAIE 227

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP 166
           +L  ++   P+P++  I+G A  AG QL   CDL +    + F  P
Sbjct: 98  ELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFP 143

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 8/132 (6%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTRKVPL 243
           P+L  + G     G +L    D+ IA   + F+      GI+   P     +   R    
Sbjct: 104 PLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIY---PFGGATIRFPRTAGW 160

Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
           G      +T     A +A+  G++  +V    E       +   I   +   +    +  
Sbjct: 161 GNAMRWMLTADTFDAVEAHRIGIVQEIVPV-GEHVDTAIAIAQTIARQAPLGVQATLRNA 219

Query: 304 YQQMSLNIEEAY 315
              +      A 
Sbjct: 220 RLAVREGDAAAE 231

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 45/250 (18%), Positives = 79/250 (31%), Gaps = 52/250 (20%)

Query: 95  SGMELETLAVDKEG--------RPKLDEIFSTCSDLM------LSILRHPVPILAII--- 137
           S   L+ L+V  E             + +    S +M      +  +     I  ++   
Sbjct: 1   SNAMLKFLSVRVEDHIAVATLNHAPANAM---SSQVMHDVTELIDQVEKDDNIRVVVIHG 57

Query: 138 SGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA 197
            G   +AG  +     +  A  A++ +  G              + +   P++A I G A
Sbjct: 58  EGRFFSAGADIKEFTSVTEAKQATELAQLG--------QVTFERVEKCSKPVIAAIHGAA 109

Query: 198 AAAGCQLVATCDLAIATTASKFS--------TPGA----RHGIFCSTPAVALTRKVPLGV 245
              G +   +C +  AT ++K           PG     R           L R V    
Sbjct: 110 LGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQR-----------LPRYVGKAK 158

Query: 246 VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQ 305
              M +T  PI+  +A   GL+  V +  E    +T  +   I   S +      + L  
Sbjct: 159 ACEMMLTSTPITGAEALKWGLVNGVFAE-ETFLDDTLKVAKQIAGKSPATARAVLELLQT 217

Query: 306 QMSLNIEEAY 315
             S +  E  
Sbjct: 218 TKSSHYYEGV 227

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 8/149 (5%)

Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
           L+S        I + P P++A I G     G  L++ CD+   T  + F       G+  
Sbjct: 92  LISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGL-- 149

Query: 231 STPAVA----LTRKV-PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLT 285
               V     L + +    +V  +T T   + A +A ++GL++RV    + + +    L 
Sbjct: 150 -AADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALA 208

Query: 286 SAILENSRSVLTLGKQFLYQQMSLNIEEA 314
           + I   S   +   K  L      +++E+
Sbjct: 209 ADISSKSPVAVQGSKINLIYSRDHSVDES 237

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 73.0 bits (180), Expect = 4e-15
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 10/143 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS-TPGARHGIFCSTP-- 233
            L+ ++L   VP++A ++G       ++    D+ +A  ++ F   P    GI    P  
Sbjct: 99  RLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAESATFQDGPHFPSGI---VPGD 154

Query: 234 --AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
              V     +     R   +TG  + A+ A + G +  V+S  +EL      L   I E 
Sbjct: 155 GAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAEK 213

Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
                   ++ L +Q+   +E  
Sbjct: 214 PLLARRYARKVLTRQLRRVMEAD 236

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF 163
            L+ ++L   VP++A ++G       ++    D+ +A  ++ F
Sbjct: 99  RLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAESATF 140

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 74.1 bits (182), Expect = 5e-15
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)

Query: 181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA---L 237
              R   P +A + G A   G QL+   D  +A++ + FS P A+ GI    P  A   L
Sbjct: 279 HSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGI---IPGAANLRL 335

Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
            R     V R + + G  I A++     L+  VV   +EL++  +   + +  ++
Sbjct: 336 GRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEP-DELDAAIERSLTRLDGDA 389

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 72.6 bits (179), Expect = 5e-15
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 188 PILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPL 243
           P +A ++G A   G +L    DL +A   ++F  P  + G+     A      +  ++P 
Sbjct: 103 PTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLI---AAAGGVFRIAEQLPR 159

Query: 244 GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFL 303
            V   + +TG P+SA  A + GLI  VV +   +      L SAI  N+   +   K+  
Sbjct: 160 KVAMRLLLTGEPLSAAAARDWGLINEVVEA-GSVLDAALALASAITVNAPLSVQASKRIA 218

Query: 304 Y 304
           Y
Sbjct: 219 Y 219

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 71.8 bits (177), Expect = 8e-15
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----VALTR 239
           R   P++  + G    AG +L+   D+A+A   ++F+      GI    P     V   R
Sbjct: 103 RRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIP---PLGGSTVRFPR 159

Query: 240 KVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLG 299
                      +TG    A +A    L+T VV    E  +        I   +   +   
Sbjct: 160 AAGWTDAMRYILTGDEFDADEALRMRLLTEVVEP-GEELARALEYAERIARAAPLAVRAA 218

Query: 300 KQFLYQQMSLNIEEA 314
            Q  +Q      + A
Sbjct: 219 LQSAFQGRDEGDDAA 233

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV 235
             +   I + P PI++++ G       +++ + DL IA + S FS      G+      +
Sbjct: 86  RQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGV---PYNL 142

Query: 236 A----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
                LTR     +V+ +  T  PI+AQ A   G++  VV   EELE  T  +   I E 
Sbjct: 143 VGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEK 201

Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
           +   + + K+ L      +   +
Sbjct: 202 APLAIAVIKEELRVLGEAHTMNS 224

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 10/143 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS-TPGARHGIFCSTP-- 233
            ++ ++L   VP+++ ++G AA    + + T D+ +A+  + F   P    GI    P  
Sbjct: 108 KVLQNLLDIEVPVISAVNG-AALLHSEYILTTDIILASENTVFQDMPHLNAGI---VPGD 163

Query: 234 --AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
              +     + L   R    T   ++AQ AY   ++  V+    +L      +   + + 
Sbjct: 164 GVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ-SKLMERAWEIARTLAKQ 222

Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
               L   +  L Q++   + E 
Sbjct: 223 PTLNLRYTRVALTQRLKRLVNEG 245

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 69.1 bits (170), Expect = 8e-14
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 8/143 (5%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
            +   I    VP++A + G     G +L     + +A  ++ ++ P    GIF       
Sbjct: 97  RVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIF---VGGG 153

Query: 237 ----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
               L R + +  +  M +TG   SA +    G    ++ +      +   L + + +N+
Sbjct: 154 GSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIEN-GSAYDKALELGNRVAQNA 212

Query: 293 RSVLTLGKQFLYQQMSLNIEEAY 315
                   Q L      N +   
Sbjct: 213 PLTNFAVLQALPMIAEANPQTGL 235

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 69.1 bits (170), Expect = 1e-13
 Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 44/246 (17%)

Query: 93  GFSGMELETLAVDKEG--------RPK---------LDEIFSTCSDLMLSILRHPVPILA 135
           G   M  ET+ V+++         RP+         ++E+ S       + L     I A
Sbjct: 18  GPGSMTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSA-----ATELDDDPDIGA 72

Query: 136 II---SGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAI 192
           II   S  A AAG  +     +A  T A  F+   +             +     P +A 
Sbjct: 73  IIITGSAKAFAAGADIKE---MADLTFADAFTADFF--------ATWGKLAAVRTPTIAA 121

Query: 193 ISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----LTRKVPLGVVRS 248
           ++G A   GC+L   CD+ IA   +KF  P  + G+    P +     LTR +       
Sbjct: 122 VAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGV---LPGMGGSQRLTRAIGKAKAMD 178

Query: 249 MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS 308
           + +TG  + A +A  +GL++RVV + ++L +E +   + I + S S   + K+ + +   
Sbjct: 179 LILTGRTMDAAEAERSGLVSRVVPA-DDLLTEARATATTISQMSASAARMAKEAVNRAFE 237

Query: 309 LNIEEA 314
            ++ E 
Sbjct: 238 SSLSEG 243

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----L 237
           +     P++A ++G+A   G +L  +CDL +A++A++F  P    G+    P       L
Sbjct: 91  LSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGV---MPGAGGTQRL 147

Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
           T+ +          TG  +SA++A   G++ RVVS  E L  ET  L   + E     L 
Sbjct: 148 TKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSP-ELLMEETMRLAGRLAEQPPLALR 206

Query: 298 LGKQFLYQQMSLNIEEA 314
           L K+ + + +   + E 
Sbjct: 207 LIKEAVQKAVDYPLYEG 223

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 67.9 bits (167), Expect = 2e-13
 Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 26/152 (17%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS----------TPGA-- 224
           +L L + +  + +++ I+G   A GC +  TCD  I     ++                 
Sbjct: 88  ELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWL 147

Query: 225 --RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETK 282
                         L   +           G+     +A   G++ +VV   E+++S   
Sbjct: 148 KDT-----------LENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTAL 195

Query: 283 VLTSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
              +  +        L K  + +  +  +   
Sbjct: 196 SAIAQWMAIPDHARQLTKAMMRKATASRLVTQ 227

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 67.6 bits (166), Expect = 3e-13
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----L 237
           I R   P++A ++G A   GC+L   CD+  A   ++F  P    G     P       L
Sbjct: 93  ITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGT---IPGAGGTQRL 149

Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
           TR V   +   M +TG  ISAQDA  AGL++++    E L  E       I  NS+ ++ 
Sbjct: 150 TRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNSKIIVA 208

Query: 298 LGKQFLYQQMSLNIEEA 314
           + K+ +     + + E 
Sbjct: 209 MAKESVNAAFEMTLTEG 225

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 66.4 bits (163), Expect = 7e-13
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA----L 237
           + +   PI+A ++G A   GC+L   CDL IA   ++F  P    GI    P +     L
Sbjct: 96  LTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGI---LPGLGGTQRL 152

Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLT 297
           TR V       + +TG  ++A++A   GL++R+V +  +L  E   +   I   SR    
Sbjct: 153 TRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPA-ADLLDEALAVAQRIARMSRPAGR 211

Query: 298 LGKQFLYQQMSLNIEEA 314
             K  + +     +   
Sbjct: 212 AVKDAINEAFERPLSAG 228

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 66.4 bits (163), Expect = 8e-13
 Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 24/151 (15%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS--------TPGA---- 224
             M  + + P P++A I+G+A   G +L   CD  IA  ++            PGA    
Sbjct: 93  TTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQ 152

Query: 225 RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
           R           L R + +G  + +  TG  ISAQ+A   GL+  VV     LE +   +
Sbjct: 153 R-----------LPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPV-HLLEEKAIEI 200

Query: 285 TSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
              I  N    + L K+ +   + +++    
Sbjct: 201 AEKIASNGPIAVRLAKEAISNGIQVDLHTGL 231

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 66.4 bits (163), Expect = 9e-13
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA-TTASKFSTPGARHGIFCSTPAV 235
           + +  I R P   +A + G     G ++   CDL      A K   P    G+       
Sbjct: 92  ETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGV---LAGT 148

Query: 236 A----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
                L R +       M ITG  I+ Q+A   GL+ RV     E    T+     +  +
Sbjct: 149 GGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQ-AETRERTREYARKLANS 207

Query: 292 SRSVLTLGKQFLYQQMSLNIEEA 314
           +   ++  K  +     + +  A
Sbjct: 208 ATYAVSNIKLAIMNGKEMPLNVA 230

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 25/148 (16%), Positives = 41/148 (27%), Gaps = 7/148 (4%)

Query: 174 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA--TTASKFSTPGARHGIFCS 231
           T + L  S     +  LA ++G  A  G +L   CD        +S  S P         
Sbjct: 117 TRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP 176

Query: 232 ----TPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSA 287
                  V   RKV              +  + A    L+  VV    + +   +     
Sbjct: 177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVV-KPNQFDQAIQARALE 235

Query: 288 ILENSRSVLTLGKQFLYQQMSLNIEEAY 315
           +   S          L +    + E+  
Sbjct: 236 LAAQSDRPAHAQGVPLTRIERTDREDGL 263

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 24/150 (16%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS--------TPGA---- 224
           + + ++   P P +A ++G A  AG  L    D  ++    KF          PG     
Sbjct: 106 EAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMG 165

Query: 225 RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
           R           LTR V     + +  +G    A++A   GLI  +V+  +++       
Sbjct: 166 R-----------LTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAP-DDVYDSAVAW 213

Query: 285 TSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
               LE     L   K  +     L   E 
Sbjct: 214 ARRYLECPPRALAAAKAVINDVFELEATER 243

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 37/225 (16%), Positives = 65/225 (28%), Gaps = 30/225 (13%)

Query: 97  MELETLAVDKEG--------RPKL----DEIFSTCSDLMLSILRHPVPILAIISGV---A 141
              ET+    +G         P +     E+      L+  +     P + I        
Sbjct: 5   ASYETIKARLDGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADF 64

Query: 142 AAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAG 201
                      D+      +  +        ++   L   + + P   +A + G A  AG
Sbjct: 65  FFPH----V--DMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAG 118

Query: 202 CQLVATCDLAIATTAS-KFSTPGARHGIFCSTPAVA----LTRKVPLGVVRSMTITGIPI 256
            + +  CD+  A+  +     P    G     P       LTR +  G      +T    
Sbjct: 119 SEFLLACDMRFASRENAILGQPEVGIGA---PPGAGAIQHLTRLLGRGRALEAVLTSSDF 175

Query: 257 SAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQ 301
            A  A   G + R V    EL+     + + +    R  L   K 
Sbjct: 176 DADLAERYGWVNRAVPD-AELDEFVAGIAARMSGFPRDALIAAKS 219

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KFSTPGARHGIFCSTPAV 235
            +   I   P   +  ++G A   G + VA  D+A A   +       A  GI    P  
Sbjct: 97  AVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGI---IPGG 153

Query: 236 A----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILEN 291
                L  +V       + +T     A+ A + G I R + + +EL+     +   I   
Sbjct: 154 GGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA-DELDEYVDRVARNIAAL 212

Query: 292 SRSVLTLGKQ 301
              V+   K+
Sbjct: 213 PDGVIEAAKR 222

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 31/210 (14%), Positives = 68/210 (32%), Gaps = 14/210 (6%)

Query: 112 LDEIFSTCSDLMLSILRHPVPILAIISGVAA---AAGCQLVATCDLAIATTASKFSTPGY 168
           +D+I    ++L   +    V    ++    +     G  L   C L      ++     Y
Sbjct: 65  VDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLD--Y 122

Query: 169 NILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGI 228
                         L      +A++ G A   G +   +C   IA        P     +
Sbjct: 123 AQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDL 182

Query: 229 FCSTPAVA----LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVL 284
           F   P +     + +++   + + + + G   SA+     GL+ RVV    +  +  + +
Sbjct: 183 F---PGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPR-GQGVAAVEQV 238

Query: 285 TSAILENSRSVLTLGKQFLYQQMSLNIEEA 314
                + +       +Q      ++ +EE 
Sbjct: 239 I-RESKRTPHAWAAMQQVREMTTAVPLEEM 267

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 26/140 (18%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS--------TPGA---- 224
            ++  I   PVP +A I G+A   G +L   CD+ +A +++K           PG     
Sbjct: 96  AVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQ 155

Query: 225 RHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE---ELESET 281
           R           L R + + + + +  +   +  ++A   GLI+ V+  N+       + 
Sbjct: 156 R-----------LPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKA 204

Query: 282 KVLTSAILENSRSVLTLGKQ 301
             L    L      + + K 
Sbjct: 205 LDLAREFLPQGPVAMRVAKL 224

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Length = 566

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
            R  + +    TMGV L +A+ A L      P ++VV V GD  F  S MELET  
Sbjct: 410 ARQVMISNGQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQSSMELETAV 461

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Length = 590

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 3   QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
             E   L +Y   +A+     ++ I   + G +T    R L +         +  F TMG
Sbjct: 358 TKEEGDLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTP-KNMWRTSPLFATMG 416

Query: 62  VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           + +   L A        P ++V  + GD AF  +  ++ T  
Sbjct: 417 IAIPGGLGAKNTY----PDRQVWNIIGDGAFSMTYPDVVTNV 454

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 2/121 (1%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
           L  ++     P +A+I G+    G  L       +AT    F+ P    G+F        
Sbjct: 94  LNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYF 153

Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN--EELESETKVLTSAILENSRSV 295
             ++   +   + +TG  +  +D Y AG+ T  V S     LE +   L S   EN  SV
Sbjct: 154 LPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASV 213

Query: 296 L 296
           L
Sbjct: 214 L 214

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVAL 237
           L   +  +  P+L    G+    G  L+A     + T  S+ + P    G++        
Sbjct: 134 LDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYF 193

Query: 238 TRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN--EELESE 280
             ++P  +   + +T   ++A DA   GL    ++ +  E +   
Sbjct: 194 LNRMPGKMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDA 238

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Length = 603

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 3   QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
             +  PL  Y  + AV      + I   + G   ++  R L L       + +  F TMG
Sbjct: 365 DKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTP-SNRHITSNLFATMG 423

Query: 62  VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM---ELETLA 103
           VG+  A+AA L      P ++V  + GD       M   +L T  
Sbjct: 424 VGIPGAIAAKLNY----PERQVFNLAGDGGA---SMTMQDLATQV 461

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Length = 549

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 14  AIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAAL 72
               +     D+ I   + G  T+   R L +N   R  L +   G+M   +  AL A  
Sbjct: 362 LAQQISHFAADDAIFTCDVGTPTVWAARYLKMNG-KRRLLGSFNHGSMANAMPQALGAQA 420

Query: 73  YCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
                 P ++VV + GD  F     +  ++ 
Sbjct: 421 TE----PERQVVAMCGDGGFSMLMGDFLSVV 447

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Length = 565

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 47  LPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDK 106
           +    +  G +  MG G+   + A         GKR++ V GD AF  +G EL       
Sbjct: 411 IDAGLMAPGYYAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQMTGWELGNCRRLG 466

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 171 LVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC 230
              +   +   +     P +A I G+A   G +L   C   I+  A++   P  + G+  
Sbjct: 87  GYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVI- 145

Query: 231 STPAVALTRKVP--LGVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELE 278
             P    T+++P  +G+ +++ +  T  P+ A++ ++ GLI  VV   E + 
Sbjct: 146 --PGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVT 195

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVP--L 243
            VP +A I+G+A   G ++    D  +   ++K   P  + GI+   P    T ++P  +
Sbjct: 103 NVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIY---PGFGGTVRLPRLI 159

Query: 244 GVVRSMTI--TGIPISAQDAYNAGLITRVVSSNEELE 278
           GV  ++    +G    A+DA     +  VV++++   
Sbjct: 160 GVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGA 196

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Length = 616

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
            RH ++ G  G +G  +  AL          P + VV + GD  F F   EL   A
Sbjct: 432 DRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFLIEELAVGA 483

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Length = 563

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           P   L  G  G+MGVG G AL A +       G+R + V GD + G+S  E +TL 
Sbjct: 409 PGGFLCHGYLGSMGVGFGTALGAQVADLE--AGRRTILVTGDGSVGYSIGEFDTLV 462

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Length = 589

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           PR  + +   G +G G   AL A L      P  RV    GD A  +   E     
Sbjct: 414 PRRLVTSMAEGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYHFNEFRVAV 465

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Length = 563

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 3   QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMG 61
              S PL      + +   + +  +++ E G +   I       N   + +    +G++G
Sbjct: 359 VPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGI-NQTTFPN-NTYGISQVLWGSIG 416

Query: 62  VGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
              G  L AA       P KRV+   GD +   +  E+ T+ 
Sbjct: 417 FTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMI 458

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Length = 677

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           P   + +G  GTMG GL  A+ A +      P   V+ + GD++F  +  EL +  
Sbjct: 503 PHTFITSGGLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMTLTELSSAV 554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 48/347 (13%), Positives = 98/347 (28%), Gaps = 76/347 (21%)

Query: 4   DESVPLNY---YAAIHAVQVSIPDNCIIVGEGANTM-DIGRSLLLNNLPRHRLDAGTFGT 59
           +E + +NY    + I   Q        +  E  + + +  +     N+ R +        
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL----- 138

Query: 60  MGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF--- 116
                   L  AL      P K V+ + G    G + + L+     K       +IF   
Sbjct: 139 -------KLRQALL--ELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 117 -STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASK----------FST 165
              C+         P  +L ++  +         +  D +                   +
Sbjct: 189 LKNCNS--------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 166 PGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGA 224
             Y      C    L +L + V      +  A    C+ L+ T    +      F +   
Sbjct: 241 KPYE----NC----LLVLLN-VQNAKAWN--AFNLSCKILLTTRFKQVTD----FLSAAT 285

Query: 225 RHGIFCSTPAVALTRKVPLGVVRS---MTITGIPISAQDA--YNAGLITRVVSSNEE--- 276
              I     ++ LT      ++          +P            +I   +        
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 277 --LESETKVLTSAILENSRSVLT--LGKQFLYQQMSL-----NIEEA 314
                    LT+ I E+S +VL     ++ ++ ++S+     +I   
Sbjct: 346 NWKHVNCDKLTTII-ESSLNVLEPAEYRK-MFDRLSVFPPSAHIPTI 390

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Length = 573

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           P   L +    + G G+  A+ A +      P +    + GD  F  +  +LET+A
Sbjct: 426 PFGFLTSAGCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSNSSDLETIA 477

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
            L+  I R+  P+LA I GVA   G +L   C   IA   ++   P    GI    P   
Sbjct: 97  SLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGIL---PGAR 153

Query: 237 LTRKVP--LGVVRSMTI--TGIPISAQDAYNAGLITRVVSSN 274
            T+ +P  +GV  ++ +  +G  +SA +A   G++  VV S+
Sbjct: 154 GTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSD 195

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 20/145 (13%)

Query: 171 LVSTCSDLMLSILRHPVPILAIIS---GVAAAAGCQLVATCDLAIATTASKFSTPGARHG 227
                 +++  I +  +P++  +      AA+AG  +     L      +         G
Sbjct: 52  RADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILG 111

Query: 228 IFCSTP-----------------AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRV 270
              +                   ++A        +        + ++ ++A   G+I  V
Sbjct: 112 YSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVV 171

Query: 271 VSSNEELESETKVLTSAILENSRSV 295
                EL  ++  + + I  N R V
Sbjct: 172 ARDINELLKKSNGMKTKIPVNGRYV 196

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA 103
           P         G +G  L  A+   L      P ++V+ V GD +  +S   L T A
Sbjct: 392 PGSYYFCAA-GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYSISALWTAA 442

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Length = 590

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 48  PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF 92
           PR  L +G  G MG GL  A+ A++      P   VV + GD +F
Sbjct: 416 PRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSF 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.69
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.61
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.57
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	99.35
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.32
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	99.29
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.27
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.25
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	99.24
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	99.23
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	99.23
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.22
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	99.21
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	99.2
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	99.2
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	99.19
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	99.18
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	99.17
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	99.16
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	99.16
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	99.15
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	99.15
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	99.15
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	99.15
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	99.14
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	99.14
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	99.14
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	99.13
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	99.13
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	99.13
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	99.13
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	99.13
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	99.13
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	99.12
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	99.12
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	99.12
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	99.11
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	99.11
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	99.11
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	99.11
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	99.11
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	99.11
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	99.1
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	99.1
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	99.09
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	99.08
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	99.08
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	99.06
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	99.06
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.06
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	99.06
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	99.05
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	99.05
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	99.05
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	99.05
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	99.04
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	99.04
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	99.04
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	99.04
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	99.04
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	99.03
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	99.03
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	99.03
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	99.02
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	99.02
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	99.02
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	99.02
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	99.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	98.99
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	98.99
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	98.99
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	98.98
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	98.98
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	98.98
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	98.97
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	98.97
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	98.95
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	98.95
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	98.95
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	98.95
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	98.94
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	98.94
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	98.94
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	98.93
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	98.93
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	98.92
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	98.91
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	98.91
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	98.9
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	98.87
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	98.85
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	98.83
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	98.83
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	98.81
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.77
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.77
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	98.76
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	98.74
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	98.73
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	98.7
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	98.65
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.63
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	98.61
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.46
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	98.46
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	98.44
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.34
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	97.78
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	97.76
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.6
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	97.59
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	97.58
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	97.5
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.46
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	97.4
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.32
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.31
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.24
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	97.22
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.13
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.12
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	97.0
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.8
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	96.52
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.38
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.29
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	96.21
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	96.16
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	96.06
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	95.92
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	95.91
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	95.76
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.68
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	95.27
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	94.74
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.74
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	94.71
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	94.6
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	94.39
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	94.31
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	94.27
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	93.77
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	93.25
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	92.79
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	91.99
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	91.83
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	91.74
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	91.46
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	91.12
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	89.12
3l84_A	632	Transketolase; TKT, structural genomics, center fo	88.51
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	87.25
3uk1_A	711	Transketolase; structural genomics, seattle struct	86.72
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	85.62
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	85.08
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	85.04
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	84.85
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	84.82
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	83.73
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	83.19
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	81.23
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	80.55
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	80.41

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1e-45  Score=317.61  Aligned_cols=210  Identities=24%  Similarity=0.292  Sum_probs=189.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |+++|||||+++|++|..|+        .+|.+++.+++.|+++|+|||+|.|+.||+|+|++++....   +       
T Consensus        10 Va~itlnrP~~~NAl~~~m~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~-------   71 (254)
T 3hrx_A           10 VLVLTLNRPEKLNAITGELL--------DALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRK---P-------   71 (254)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSC---C-------
T ss_pred             EEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccc---h-------
Confidence            88999999999999999998        99999999999999999999999999999999998753200   0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +.              ......++..+..+.++|||+||+|+|+|
T Consensus        72 -----------------------------------~~--------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a  102 (254)
T 3hrx_A           72 -----------------------------------DY--------------EAHLRRYNRVVEALSGLEKPLVVAVNGVA  102 (254)
T ss_dssp             -----------------------------------CH--------------HHHTHHHHHHHHHHHTCSSCEEEEECSEE
T ss_pred             -----------------------------------hh--------------HHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence                                               00              01122345567788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||+++|++|+++ ++++++++|..++++++++|+.++++||+++|||+++++. ++
T Consensus       103 ~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~  181 (254)
T 3hrx_A          103 AGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPA-EK  181 (254)
T ss_dssp             ETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GG
T ss_pred             eehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhhcCcccCHHHHHHCCCeEEecCc-HH
Confidence            999999999999999999999999999999999885 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      +.+.+.+++++|+..+|.+++.+|+++++....++++++
T Consensus       182 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l  220 (254)
T 3hrx_A          182 LMEEALSLAKELAQGPTRAYALTKKLLLETYRLSLTEAL  220 (254)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999998887753

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=3.7e-45  Score=316.62  Aligned_cols=223  Identities=22%  Similarity=0.238  Sum_probs=191.7

Q ss_pred             CceEEe-CCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVG-EGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~-~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      |.|++. +.+    |++||||||+++|++|..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++++.
T Consensus        15 e~il~~~~~g----Va~itlnRP~~~NAl~~~m~--------~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~   82 (274)
T 4fzw_C           15 EFILSHVEKG----VMTLTLNRPERLNSFNDEMH--------AQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRN   82 (274)
T ss_dssp             -CEEEEEETT----EEEEEECCTTTTSCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---
T ss_pred             ccEEEEEECC----EEEEEEcCcCccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhh
Confidence            445544 354    89999999999999999998        99999999999999999999999999999999998764


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ....                                     +.    ..|...             .+...+..++..+.
T Consensus        83 ~~~~-------------------------------------~~----~~~~~~-------------~~~~~~~~l~~~l~  108 (274)
T 4fzw_C           83 VDPT-------------------------------------GP----APDLGM-------------SVERFYNPLVRRLA  108 (274)
T ss_dssp             -----------------------------------------------CCCHHH-------------HHHHTHHHHHHHHH
T ss_pred             cccc-------------------------------------cc----chHHHH-------------HHHHHHHHHHHHHH
Confidence            2100                                     00    001100             22233456777889


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+
T Consensus       109 ~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltg~~i~A~eA~  188 (274)
T 4fzw_C          109 KLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAH  188 (274)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHHHHHHHHCCCEEHHHHH
T ss_pred             HCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999885 57899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|||+++++. +++.+.+.+++++++..||.+++.+|+++++....+++++
T Consensus       189 ~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  239 (274)
T 4fzw_C          189 EWGMIWQVVDD-ETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQ  239 (274)
T ss_dssp             HTTSSSEEECG-GGHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred             HCCCceEEeCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCHHHH
Confidence            99999999999 9999999999999999999999999999999998888765

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=5.3e-45  Score=313.11  Aligned_cols=215  Identities=25%  Similarity=0.340  Sum_probs=191.0

Q ss_pred             eEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhh
Q psy12573         27 IIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVD  105 (315)
Q Consensus        27 ~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~  105 (315)
                      ++++. ++    |+++|||||+++|++|..++        .+|.+++++++.|+++++|||||.|+.||+|+|++++...
T Consensus         7 l~ve~~~~----Va~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~   74 (258)
T 4fzw_A            7 LIVSRQQR----VLLLTLNRPAARNALNNALL--------MQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK   74 (258)
T ss_dssp             EEEEEETT----EEEEEEECGGGTTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTC
T ss_pred             EEEEEECC----EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccc
Confidence            44443 65    89999999999999999998        9999999999999999999999999999999999876430


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcC
Q psy12573        106 KEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRH  185 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  185 (315)
                          ...                                 ..                       .......++..+.++
T Consensus        75 ----~~~---------------------------------~~-----------------------~~~~~~~~~~~l~~~   94 (258)
T 4fzw_A           75 ----DLA---------------------------------AT-----------------------LNDTRPQLWARLQAF   94 (258)
T ss_dssp             ----CHH---------------------------------HH-----------------------HTCSHHHHHHHHHTC
T ss_pred             ----hhh---------------------------------hH-----------------------HHhHHHHHHHHHHHC
Confidence                000                                 00                       000112456678899


Q ss_pred             CCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHc
Q psy12573        186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNA  264 (315)
Q Consensus       186 ~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~  264 (315)
                      |||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|+. +++++++++|..++++++++|+.++++||+++
T Consensus        95 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~i~a~eA~~~  174 (258)
T 4fzw_A           95 NKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQA  174 (258)
T ss_dssp             CSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH
T ss_pred             CCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHHHHcCCcCcHHHHHHC
Confidence            99999999999999999999999999999999999999999999987 45789999999999999999999999999999


Q ss_pred             CccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        265 GLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      |+|+++++. +++.+.+.+++++|++.+|.+++.+|+++++....+++++
T Consensus       175 GLv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~  223 (258)
T 4fzw_A          175 GLVSDVFPS-DLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAG  223 (258)
T ss_dssp             TSCSEEECT-TTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CCeeEEeCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999 9999999999999999999999999999999998888765

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=7.4e-44  Score=307.48  Aligned_cols=221  Identities=19%  Similarity=0.228  Sum_probs=193.0

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||||.|+.||+|.|++++.
T Consensus         4 ~~v~~~~~~~----va~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~   71 (268)
T 3i47_A            4 SDLLYEIQDK----VGLLTMNRISKHNAFDNQLL--------TEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQ   71 (268)
T ss_dssp             CSEEEEEETT----EEEEEECCTTTTTCBCHHHH--------HHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHH
T ss_pred             CEEEEEEECC----EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhh
Confidence            4455543 55    88999999999999999998        99999999999999999999999999999999998875


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      .......                                            ..           .......+..++..+.
T Consensus        72 ~~~~~~~--------------------------------------------~~-----------~~~~~~~~~~~~~~l~   96 (268)
T 3i47_A           72 SMANFTE--------------------------------------------EE-----------NLEDSLVLGNLMYSIS   96 (268)
T ss_dssp             HHHTCCH--------------------------------------------HH-----------HHHHHHHHHHHHHHHH
T ss_pred             ccccccH--------------------------------------------HH-----------HHHHHHHHHHHHHHHH
Confidence            3100000                                            00           0011223445777889


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYN  263 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~  263 (315)
                      ++||||||+|+|+|+|||++|+++||+++++++++|++||.++|++|++++.++++++|..++++++++|+.++++||++
T Consensus        97 ~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~A~~llltg~~i~A~eA~~  176 (268)
T 3i47_A           97 QSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYS  176 (268)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEHHHHHH
T ss_pred             hCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999987778999999999999999999999999999


Q ss_pred             cCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        264 AGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +|||+++++. +++.+.+.+++++|++.||.+++.+|+++++....++++
T Consensus       177 ~GLV~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~  225 (268)
T 3i47_A          177 LNLVQHCVPD-DTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDE  225 (268)
T ss_dssp             TTSCSEEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSH
T ss_pred             cCCCcEeeCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCChhH
Confidence            9999999999 999999999999999999999999999999988777655

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=6e-44  Score=307.93  Aligned_cols=222  Identities=22%  Similarity=0.264  Sum_probs=195.1

Q ss_pred             CCCCceEEe-C-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-Cccccchh
Q psy12573         22 IPDNCIIVG-E-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGME   98 (315)
Q Consensus        22 ~~~~~~~~~-~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~D   98 (315)
                      +..+.+.+. . ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.| +.||+|.|
T Consensus         5 m~~~~v~~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~D   72 (265)
T 3kqf_A            5 LQLQNISVDYATPH----VVKISLNRERQANSLSLALL--------EELQNILTQINEEANTRVVILTGAGEKAFCAGAD   72 (265)
T ss_dssp             --CCSEEEECCSTT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBC
T ss_pred             ccCCeEEEEEeeCC----EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcC
Confidence            344556665 4 55    88999999999999999988        9999999999999999999999999 88999999


Q ss_pred             hhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHH
Q psy12573         99 LETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDL  178 (315)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~  178 (315)
                      ++++...  ...                                                        ....+......+
T Consensus        73 l~~~~~~--~~~--------------------------------------------------------~~~~~~~~~~~~   94 (265)
T 3kqf_A           73 LKERAGM--NEE--------------------------------------------------------QVRHAVSMIRTT   94 (265)
T ss_dssp             HHHHTTC--CHH--------------------------------------------------------HHHHHHHHHHHH
T ss_pred             hHHHhcc--CHH--------------------------------------------------------HHHHHHHHHHHH
Confidence            9877430  000                                                        000223334567


Q ss_pred             HHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCC
Q psy12573        179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPIS  257 (315)
Q Consensus       179 ~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~  257 (315)
                      +..+.++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++
T Consensus        95 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~  174 (265)
T 3kqf_A           95 MEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRIS  174 (265)
T ss_dssp             HHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence            7788999999999999999999999999999999999999999999999999885 578999999999999999999999


Q ss_pred             HHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        258 AQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       258 a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++||+++|||+++++. +++.+.+.+++++|+..||.+++.+|+++++....+++++
T Consensus       175 a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~  230 (265)
T 3kqf_A          175 AQEAKEYGLVEFVVPV-HLLEEKAIEIAEKIASNGPIAVRLAKEAISNGIQVDLHTG  230 (265)
T ss_dssp             HHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            9999999999999998 9999999999999999999999999999999988888765

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=3.3e-43  Score=304.15  Aligned_cols=218  Identities=17%  Similarity=0.196  Sum_probs=192.6

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+. |+++..++        .+|.++|.+++.|+++|+|||+|.|+.||+|.|++++.
T Consensus        24 ~~v~~~~~~~----Va~ItlnrP~~-Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~   90 (277)
T 4di1_A           24 EFVSVVADQG----LATLVVSRPPT-NAMTRQVY--------REIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELR   90 (277)
T ss_dssp             CSEEEEEETT----EEEEEECCTTT-TCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHH
T ss_pred             ceEEEEEECC----EEEEEECCCCC-CCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCccccc
Confidence            3444443 55    89999999999 99999888        99999999999999999999999999999999998875


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ..  ...                                             .           ...+...+..++..+.
T Consensus        91 ~~--~~~---------------------------------------------~-----------~~~~~~~~~~~~~~l~  112 (277)
T 4di1_A           91 TL--NAP---------------------------------------------E-----------ADTAARVRLEAIDAVA  112 (277)
T ss_dssp             TC--CHH---------------------------------------------H-----------HHHHHHHHHHHHHHHH
T ss_pred             cc--ChH---------------------------------------------H-----------HHHHHHHHHHHHHHHH
Confidence            31  000                                             0           0012223456777889


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+.+ .++|++++|..++++++++|+.++++||+
T Consensus       113 ~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~  192 (277)
T 4di1_A          113 AIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEAL  192 (277)
T ss_dssp             HCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHH
T ss_pred             hCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999885 57899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|||+++++. +++.+.+.+++++|+..||.+++.+|+++++....+++++
T Consensus       193 ~~GLV~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  243 (277)
T 4di1_A          193 ALGLIDDMVAP-DDVYDSAVAWARRYLECPPRALAAAKAVINDVFELEATER  243 (277)
T ss_dssp             HHTSCSEEECG-GGHHHHHHHHHHTTTTSCHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             HCCCccEEeCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            99999999999 9999999999999999999999999999999988888765

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=2.5e-43  Score=303.45  Aligned_cols=210  Identities=19%  Similarity=0.250  Sum_probs=186.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+. |+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++...  ....      
T Consensus        16 v~~itlnrp~~-Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~~~~------   78 (261)
T 3pea_A           16 IAVATLNHAPA-NAMSSQVM--------HDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSV--TEAK------   78 (261)
T ss_dssp             EEEEEECCTTT-TCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTT--CCHH------
T ss_pred             EEEEEECCCCC-CCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhc--Cchh------
Confidence            88999999999 99999988        9999999999999999999999999999999999876421  0000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                            .           ...+......++..+.++|||+||+|+|+|
T Consensus        79 --------------------------------------~-----------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  109 (261)
T 3pea_A           79 --------------------------------------Q-----------ATELAQLGQVTFERVEKCSKPVIAAIHGAA  109 (261)
T ss_dssp             --------------------------------------H-----------HHHHHHHHHHHHHHHHTCSSCEEEEECSEE
T ss_pred             --------------------------------------H-----------HHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                                  0           001122234567788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|||+++++. ++
T Consensus       110 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  188 (261)
T 3pea_A          110 LGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAE-ET  188 (261)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GG
T ss_pred             ehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecCH-HH
Confidence            999999999999999999999999999999999875 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       189 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  226 (261)
T 3pea_A          189 FLDDTLKVAKQIAGKSPATARAVLELLQTTKSSHYYEG  226 (261)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999999877766654

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=2.3e-43  Score=303.92  Aligned_cols=226  Identities=30%  Similarity=0.436  Sum_probs=192.4

Q ss_pred             CCCceEEeC--CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhh
Q psy12573         23 PDNCIIVGE--GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE  100 (315)
Q Consensus        23 ~~~~~~~~~--g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~  100 (315)
                      +.+.+++..  ++    ++++|||||++ |+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++
T Consensus         4 ~~~~~~~~~~~~~----v~~itlnrP~~-Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~   70 (263)
T 3l3s_A            4 SQDGLLGEVLSEG----VLTLTLGRAPA-HPLSRAMI--------AALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLK   70 (263)
T ss_dssp             ----CEEEEESSS----EEEEEECSTTT-CCCCHHHH--------HHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSC
T ss_pred             CccceEEEEeeCC----EEEEEECCCCC-CCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCccCCcChH
Confidence            344555443  54    88999999999 99999988        99999999999999999999999999999999998


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML  180 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (315)
                      ++......                                         ...+..           ....+...+..++.
T Consensus        71 ~~~~~~~~-----------------------------------------~~~~~~-----------~~~~~~~~~~~~~~   98 (263)
T 3l3s_A           71 EIGRHRAD-----------------------------------------PDEGRA-----------FVTDLFEACSALML   98 (263)
T ss_dssp             CCCC----------------------------------------------CCSHH-----------HHHHHHHHHHHHHH
T ss_pred             HHhhcccc-----------------------------------------ccccHH-----------HHHHHHHHHHHHHH
Confidence            76420000                                         000000           00133444567788


Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      .+.++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|.++++++++++|..++++++++|+.++++|
T Consensus        99 ~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~e  178 (263)
T 3l3s_A           99 DLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDADW  178 (263)
T ss_dssp             HHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCCHHHHHHHHTTSCHHHHHHHHHHCCEEEHHH
T ss_pred             HHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHH
Confidence            89999999999999999999999999999999999999999999999996556789999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      |+++|+|+++++. +++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       179 A~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  231 (263)
T 3l3s_A          179 ALAAGLINRILPE-AALATHVADLAGALAARNQAPLRRGLETLNRHLELPLEQA  231 (263)
T ss_dssp             HHHHTSSSEECCH-HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHCCCccEEeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            9999999999998 9999999999999999999999999999999988888765

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=1.7e-43  Score=305.82  Aligned_cols=218  Identities=19%  Similarity=0.221  Sum_probs=190.3

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      .+.+.+.. ++    ++++|||||+++|+++..++        .+|.++++++  |+++|+|||+|.|+.||+|.|++++
T Consensus        15 ~~~v~~~~~~~----va~itlnrP~~~Nal~~~~~--------~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~   80 (275)
T 3hin_A           15 PSTLVVDTVGP----VLTIGLNRPKKRNALNDGLM--------AALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSEL   80 (275)
T ss_dssp             GGGEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGC
T ss_pred             CCeEEEEEECC----EEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHH
Confidence            34455543 55    88999999999999999998        9999999988  6899999999999999999999876


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ..  ....                                             .           .......+..++..+
T Consensus        81 ~~--~~~~---------------------------------------------~-----------~~~~~~~~~~~~~~l  102 (275)
T 3hin_A           81 RE--RDAT---------------------------------------------E-----------GLVHSQTWHRVFDKI  102 (275)
T ss_dssp             CC--CCHH---------------------------------------------H-----------HHHHHHHHHHHHHHH
T ss_pred             hc--cChh---------------------------------------------h-----------HHHHHHHHHHHHHHH
Confidence            32  0000                                             0           001122345567788


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||
T Consensus       103 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~i~A~eA  182 (275)
T 3hin_A          103 QYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEG  182 (275)
T ss_dssp             HTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHH
T ss_pred             HhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999884 5789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +++|||+++++. +++.+.+.+++++|++.+|.+++.+|+++++....+++++
T Consensus       183 ~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~  234 (275)
T 3hin_A          183 VVHGFSQYLIEN-GSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEANPQTG  234 (275)
T ss_dssp             HHHTSCSEEESS-SCHHHHHHHHHHHHTTSCHHHHHHHHTHHHHHHHSCHHHH
T ss_pred             HHCCCCCEEeCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999999 9999999999999999999999999999999888777765

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=9.5e-43  Score=303.10  Aligned_cols=211  Identities=35%  Similarity=0.556  Sum_probs=189.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++..  ...+       
T Consensus        36 va~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~--~~~~-------   98 (286)
T 3myb_A           36 VVTLTLNRPQAFNALSEAML--------AALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA--EPSR-------   98 (286)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHS--SCCH-------
T ss_pred             EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhc--cccH-------
Confidence            88999999999999999988        999999999999999999999999999999999988743  0000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                           .           ....+...+..++..+.++|||+||+|+|+|
T Consensus        99 -------------------------------------~-----------~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  130 (286)
T 3myb_A           99 -------------------------------------E-----------YYEKLFARCTDVMLAIQRLPAPVIARVHGIA  130 (286)
T ss_dssp             -------------------------------------H-----------HHHHHHHHHHHHHHHHHHSSSCEEEEECSCE
T ss_pred             -------------------------------------H-----------HHHHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence                                                 0           0002333455677788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||+++|+++.++++++++++|..++++++++|+.++++||+++|||+++++. +++
T Consensus       131 ~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l  209 (286)
T 3myb_A          131 TAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-KAL  209 (286)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGH
T ss_pred             hHHHHHHHHhCCEEEEcCCCEEECcccccCCCCchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCH-HHH
Confidence            9999999999999999999999999999999944466899999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      .+.+.+++++|+..||.+++.+|+.+++....+++++
T Consensus       210 ~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~  246 (286)
T 3myb_A          210 DDEIEAMVSKIVAKPRAAVAMGKALFYRQIETDIESA  246 (286)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            9999999999999999999999999999988888765

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=3.2e-43  Score=303.07  Aligned_cols=223  Identities=19%  Similarity=0.204  Sum_probs=192.0

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcc-ccchhhhHH
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFG-FSGMELETL  102 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~-~aG~Dl~~~  102 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.| |+|+|++++
T Consensus         4 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~   71 (263)
T 3lke_A            4 SYVHTEIQND----ALYITLDYPEKKNGLDAELG--------TSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDL   71 (263)
T ss_dssp             CSEEEEECSS----EEEEEECCGGGTTBCCHHHH--------HHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHH
T ss_pred             cEEEEEEECC----EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHH
Confidence            3444443 55    88999999999999999988        9999999999999999999999999999 899999877


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ......                                           .+..           ....+...+..++..+
T Consensus        72 ~~~~~~-------------------------------------------~~~~-----------~~~~~~~~~~~~~~~l   97 (263)
T 3lke_A           72 LICASD-------------------------------------------QSDV-----------RLREVLHVLNHCVLEI   97 (263)
T ss_dssp             HHHHHC-------------------------------------------SSSH-----------HHHHHHHHHHHHHHHH
T ss_pred             Hhhccc-------------------------------------------CCHH-----------HHHHHHHHHHHHHHHH
Confidence            430000                                           0000           0002233445677889


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|++++ +++++++|..++++++++|+.++++||
T Consensus        98 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A~~l~ltg~~~~a~eA  177 (263)
T 3lke_A           98 FTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEA  177 (263)
T ss_dssp             HTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHH
T ss_pred             HhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHH
Confidence            9999999999999999999999999999999999999999999999998854 789999999999999999999999999


Q ss_pred             HHcCccccccC-CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        262 YNAGLITRVVS-SNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~-~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +++|+|+++++ . +++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       178 ~~~GLv~~vv~~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  230 (263)
T 3lke_A          178 LRLGLIQEICENK-QELQERVKNYLKAVSEGYVPAIAATKKLLKGKAAEELKQQ  230 (263)
T ss_dssp             HHHTSSSEEESSH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHcCCCcEecCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHH
Confidence            99999999999 7 9999999999999999999999999999998776666554

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.3e-44  Score=306.07  Aligned_cols=221  Identities=19%  Similarity=0.174  Sum_probs=184.9

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      .+.+.+.. ++    ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++
T Consensus        11 ~~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~   78 (258)
T 3lao_A           11 PGRVTREQRGH----LFLIGLDRAGKRNAFDSAML--------ADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMEL   78 (258)
T ss_dssp             SCCEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHH
T ss_pred             CCeEEEEEECC----EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHH
Confidence            34455443 55    88999999999999999988        9999999999999999999999999999999999987


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      .....  .                                 ....+      .   ..              +...+..+
T Consensus        79 ~~~~~--~---------------------------------~~~~~------~---~~--------------~~~~~~~l  100 (258)
T 3lao_A           79 APKLA--A---------------------------------SGFRY------P---DG--------------GVDPWGVV  100 (258)
T ss_dssp             GGGCB--T---------------------------------TBCCC------C---TT--------------CCCTTSCS
T ss_pred             hhccc--h---------------------------------hhHHH------H---HH--------------HHHHHHHH
Confidence            53100  0                                 00000      0   00              00122345


Q ss_pred             -hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        183 -LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       183 -~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                       .++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++|
T Consensus       101 ~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~e  180 (258)
T 3lao_A          101 QPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADE  180 (258)
T ss_dssp             SSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHH
T ss_pred             HHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence             789999999999999999999999999999999999999999999999874 478999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      |+++|+|+++++. +++.+.+.+++++|++.||.+++.+|+++++....++++++
T Consensus       181 A~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l  234 (258)
T 3lao_A          181 ALRMRLLTEVVEP-GEELARALEYAERIARAAPLAVRAALQSAFQGRDEGDDAAL  234 (258)
T ss_dssp             HHHTTSCSEEECT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC-------
T ss_pred             HHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHH
Confidence            9999999999999 99999999999999999999999999999998887776653

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=9.8e-43  Score=303.81  Aligned_cols=225  Identities=20%  Similarity=0.268  Sum_probs=189.2

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+++.. ++    ++++|||+|+++|++|..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.
T Consensus        24 ~~v~~~~~~~----va~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~   91 (290)
T 3sll_A           24 FVLVDRPRPE----IALVTLNRPERMNAMAFDVM--------LPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAG   91 (290)
T ss_dssp             CEEEEEEETT----EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------C
T ss_pred             eEEEEEEECC----EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHh
Confidence            3444443 55    89999999999999999988        99999999999999999999999999999999998764


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHH
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSI  182 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l  182 (315)
                      ......                                   .      .+           .+... .+...+..++..+
T Consensus        92 ~~~~~~-----------------------------------~------~~-----------~~~~~~~~~~~~~~~~~~l  119 (290)
T 3sll_A           92 PIPHIG-----------------------------------G------LT-----------QPTIALRSMELLDEVILTL  119 (290)
T ss_dssp             CCSSCT-----------------------------------T------CC-----------HHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc-----------------------------------c------cc-----------chhHHHHHHHHHHHHHHHH
Confidence            310000                                   0      00           00001 2334456678889


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCC-ch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCS-TP-AVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~-~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      .++||||||+|+|+|+|||++|+++||+++++++++|++||+++|++|+ ++ .+++++++|..++++++++|+.++++|
T Consensus       120 ~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~~~A~~llltG~~i~A~e  199 (290)
T 3sll_A          120 RRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADE  199 (290)
T ss_dssp             HHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHH
T ss_pred             HhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999998 64 578999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC-CChhhh
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS-LNIEEA  314 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~-~~l~~~  314 (315)
                      |+++|||+++++. +++.+.+.+++++|+..||.+++.+|+.+++... .+++++
T Consensus       200 A~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~  253 (290)
T 3sll_A          200 AERIGLVSRKVAS-ESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESH  253 (290)
T ss_dssp             HHHHTSSSEEECG-GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred             HHHCCCccEEeCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccCCHHHH
Confidence            9999999999999 9999999999999999999999999999999988 787765

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.1e-42  Score=302.33  Aligned_cols=214  Identities=19%  Similarity=0.242  Sum_probs=189.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.......        
T Consensus        27 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~--------   90 (279)
T 3g64_A           27 VATVTLARPDKLNALTFEAY--------ADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSM--------   90 (279)
T ss_dssp             EEEEEESCGGGTTCBCHHHH--------HHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTC--------
T ss_pred             EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccc--------
Confidence            88999999999999999988        99999999999999999999999999999999998774311000        


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +...           ...+...+..++..+.++|||+||+|+|+|
T Consensus        91 -----------------------------------~~~~-----------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  124 (279)
T 3g64_A           91 -----------------------------------DTAR-----------LLDFNRMTGQVVRAVRECPFPVIAALHGVA  124 (279)
T ss_dssp             -----------------------------------CHHH-----------HHHHHHHHHHHHHHHHHSSSCEEEEECSEE
T ss_pred             -----------------------------------hhhH-----------HHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence                                               0000           001223345677788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCC-CCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIF-CSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      +|||++|+++||+++++++++|++||+++|++ |+++ .+++++++|..++++++++|+.++++||+++|||+++++. +
T Consensus       125 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~  203 (279)
T 3g64_A          125 AGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEE-G  203 (279)
T ss_dssp             ETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCT-T
T ss_pred             ccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCc-h
Confidence            99999999999999999999999999999999 8874 5789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus       204 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  242 (279)
T 3g64_A          204 RADEAARTLARRLADGPALAHAQTKALLTAELDMPLAAA  242 (279)
T ss_dssp             CHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            999999999999999999999999999999988888765

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=7.9e-43  Score=302.17  Aligned_cols=219  Identities=21%  Similarity=0.314  Sum_probs=190.9

Q ss_pred             CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhH
Q psy12573         23 PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET  101 (315)
Q Consensus        23 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~  101 (315)
                      +.+.+.+.. ++    ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|+++
T Consensus        23 ~~~~v~~~~~~~----va~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~   90 (278)
T 3h81_A           23 TYETILVERDQR----VGIITLNRPQALNALNSQVM--------NEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKE   90 (278)
T ss_dssp             CCSSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHH
T ss_pred             CCCeEEEEEECC----EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHH
Confidence            345555553 65    88999999999999999988        999999999999999999999999999999999998


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573        102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS  181 (315)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (315)
                      +...  . ..                                 .         ....           ...   .. +..
T Consensus        91 ~~~~--~-~~---------------------------------~---------~~~~-----------~~~---~~-~~~  110 (278)
T 3h81_A           91 MADL--T-FA---------------------------------D---------AFTA-----------DFF---AT-WGK  110 (278)
T ss_dssp             HHTC--C-HH---------------------------------H---------HHHH-----------TTT---GG-GHH
T ss_pred             Hhcc--C-hh---------------------------------h---------HHHH-----------HHH---HH-HHH
Confidence            7531  0 00                                 0         0000           000   11 346


Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      +.++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ ++++++++|..++++++++|+.++++|
T Consensus       111 l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~e  190 (278)
T 3h81_A          111 LAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAE  190 (278)
T ss_dssp             HHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH
T ss_pred             HHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHH
Confidence            7899999999999999999999999999999999999999999999999874 578999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      |+++|||+++++. +++.+.+.+++++|++.+|.+++.+|+++++....+++++
T Consensus       191 A~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~  243 (278)
T 3h81_A          191 AERSGLVSRVVPA-DDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEG  243 (278)
T ss_dssp             HHHHTSCSEEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             HHHCCCccEEeCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            9999999999999 9999999999999999999999999999999988888765

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=5.6e-43  Score=296.27  Aligned_cols=208  Identities=15%  Similarity=0.127  Sum_probs=183.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+| ++|+++..++        .+|.+++++++.| ++|+|||+|.|+.||+|.|++++...  +..       
T Consensus        15 v~~itlnrp-~~Nal~~~~~--------~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~--~~~-------   75 (233)
T 3r6h_A           15 IGVIRMDDG-KVNVLGPTMQ--------QALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSG--EAK-------   75 (233)
T ss_dssp             EEEEEECCS-SSCCCSHHHH--------HHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC-----CH-------
T ss_pred             EEEEEECCC-CCCCCCHHHH--------HHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhcc--ChH-------
Confidence            889999998 5799999888        9999999999987 68999999999999999999877420  000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                            .           ...+......++..+.++|||+||+|+|+|
T Consensus        76 --------------------------------------~-----------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  106 (233)
T 3r6h_A           76 --------------------------------------P-----------AIDMLRGGFELSYRLLSYPKPVVIACTGHA  106 (233)
T ss_dssp             --------------------------------------H-----------HHHHHHHHHHHHHHHHTCSSCEEEEECSEE
T ss_pred             --------------------------------------H-----------HHHHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence                                                  0           001223345677788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|+|++|+++||+++++++++|++||.++|++|+. +.+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       107 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~  185 (233)
T 3r6h_A          107 IAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLP-EV  185 (233)
T ss_dssp             ETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHHHHHSCCEECHHHHHHHTSCSEECCG-GG
T ss_pred             hHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCcEeeCH-HH
Confidence            99999999999999999999999999999998665 55789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus       186 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  223 (233)
T 3r6h_A          186 VLSRAEEAAREFAGLNQQAHNATKLRARAEALKAIRAG  223 (233)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999887777765

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=1.8e-42  Score=309.19  Aligned_cols=224  Identities=19%  Similarity=0.234  Sum_probs=190.9

Q ss_pred             CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-Cccccchhhh
Q psy12573         23 PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELE  100 (315)
Q Consensus        23 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~  100 (315)
                      ++|.|++.- |+    |+++|||||+++|++|..|+        .+|.+++.+++.|+++|+|||||.| +.||+|+|++
T Consensus         7 ~~e~vl~e~~~~----Va~itLnrP~~~NAl~~~m~--------~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~   74 (353)
T 4hdt_A            7 KNEDVLVNVEGG----VGLLTLNRPKAINSLTHGMV--------TTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVV   74 (353)
T ss_dssp             -CCSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHH
T ss_pred             CCCcEEEEEECC----EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHH
Confidence            456676664 76    89999999999999999998        9999999999999999999999999 5899999999


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML  180 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (315)
                      ++......                                            |.           .+...+......++.
T Consensus        75 ~~~~~~~~--------------------------------------------~~-----------~~~~~~~~~~~~~~~   99 (353)
T 4hdt_A           75 AIYHSAKA--------------------------------------------DG-----------AEARRFWFDEYRLNA   99 (353)
T ss_dssp             HHHHHHHT--------------------------------------------TS-----------HHHHHHHHHHHHHHH
T ss_pred             HHhhccch--------------------------------------------hh-----------HHHHHHHHHHHHHHH
Confidence            87531000                                            00           001123334556777


Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|++++ +++++..| .++++++++|++++++
T Consensus       100 ~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~a~~l~ltG~~i~A~  178 (353)
T 4hdt_A          100 HIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KLGLHAALTGAPFSGA  178 (353)
T ss_dssp             HHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-THHHHHHHHCCCBCHH
T ss_pred             HHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HHHHHHHhcCCCCCHH
Confidence            889999999999999999999999999999999999999999999999999855 77888877 6899999999999999


Q ss_pred             HHHHcCccccccCCchHHHHHHHHH-------------------------------------------------------
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVL-------------------------------------------------------  284 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~-------------------------------------------------------  284 (315)
                      ||+++|||+++++. +++.+.++++                                                       
T Consensus       179 eA~~~GLv~~vv~~-~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~L~~~~~~~a~~~  257 (353)
T 4hdt_A          179 DAIVMGFADHYVPH-DKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAALRAHDAPAAGEA  257 (353)
T ss_dssp             HHHHHTSCSEECCG-GGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHHHHHHCSHHHHHH
T ss_pred             HHHHcCCCcEEeCH-HHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHHHHHhcccHHHHHH
Confidence            99999999999999 9998887665                                                       


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhhCC-ChhhhC
Q psy12573        285 TSAILENSRSVLTLGKQFLYQQMSL-NIEEAY  315 (315)
Q Consensus       285 ~~~l~~~~~~a~~~~k~~l~~~~~~-~l~~~l  315 (315)
                      +++|++++|.+++.+|+.++++.+. +++++|
T Consensus       258 a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l  289 (353)
T 4hdt_A          258 ADLIATRSPIALSVTLESVRRAAKLQSLEDTL  289 (353)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhccCCCHHHHH
Confidence            4568899999999999999998875 788764

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=8.9e-43  Score=303.40  Aligned_cols=222  Identities=36%  Similarity=0.581  Sum_probs=191.0

Q ss_pred             CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhH
Q psy12573         23 PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET  101 (315)
Q Consensus        23 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~  101 (315)
                      .+..+.+.. ++    ++++|||||+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|+++
T Consensus        31 ~~~~v~~~~~~~----V~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~   98 (287)
T 2vx2_A           31 EPRPTSARQLDG----IRNIVLSNPKKRNTLSLAML--------KSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKE   98 (287)
T ss_dssp             -CCSEEEEEETT----EEEEEECCGGGTTCCCHHHH--------HHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-
T ss_pred             CCcceEEEEECC----EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHH
Confidence            334555543 55    88999999999999999988        999999999999999999999999999999999976


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573        102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS  181 (315)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (315)
                      +....                                              +-..           ...+...+..++..
T Consensus        99 ~~~~~----------------------------------------------~~~~-----------~~~~~~~~~~~~~~  121 (287)
T 2vx2_A           99 LTEEQ----------------------------------------------GRDY-----------HAEVFQTCSKVMMH  121 (287)
T ss_dssp             CCGGG----------------------------------------------CHHH-----------HHHHHHHHHHHHHH
T ss_pred             Hhccc----------------------------------------------chhH-----------HHHHHHHHHHHHHH
Confidence            53200                                              0000           00122234456778


Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      +.++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|++++..+++++|..++++++++|+.++++||
T Consensus       122 l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~L~r~vG~~~A~~llltg~~i~A~eA  201 (287)
T 2vx2_A          122 IRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEA  201 (287)
T ss_dssp             HHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHHHHTTSCHHHHHHHHHHCCCEEHHHH
T ss_pred             HHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHHHHHHhhHHHHHHHHHhCCCCCHHHH
Confidence            89999999999999999999999999999999999999999999999998865339999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +++|+|+++++. +++.+.+.+++++|+..+|.+++.+|+.+++....+++++
T Consensus       202 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~  253 (287)
T 2vx2_A          202 LLHGLLSKVVPE-AELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTA  253 (287)
T ss_dssp             HHHTSCSEEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHCCCcceecCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999999 9999999999999999999999999999999887777654

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.3e-42  Score=299.08  Aligned_cols=221  Identities=21%  Similarity=0.245  Sum_probs=192.4

Q ss_pred             CCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhh
Q psy12573         22 IPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE  100 (315)
Q Consensus        22 ~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~  100 (315)
                      |+.+.+.+.. ++   .++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++
T Consensus         6 m~~~~i~~~~~~~---gv~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~   74 (263)
T 3moy_A            6 TTYTTIATSRPVA---GVGLIRLDRPDALNALNQTLE--------AEVLDAARDFDADLEIGAIVVTGSERAFAAGADIA   74 (263)
T ss_dssp             CCCSSEEEECCST---TEEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHH
T ss_pred             CCCCeEEEEEeCC---eEEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChH
Confidence            3445555553 32   278899999999999999988        99999999999999999999999999999999998


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML  180 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (315)
                      ++...  . +.                                   .        ..              ...+...+.
T Consensus        75 ~~~~~--~-~~-----------------------------------~--------~~--------------~~~~~~~~~   94 (263)
T 3moy_A           75 EMVTL--T-PH-----------------------------------Q--------AR--------------ERNLLSGWD   94 (263)
T ss_dssp             HHTTC--C-HH-----------------------------------H--------HH--------------HTTTTHHHH
T ss_pred             HHhcc--C-ch-----------------------------------h--------HH--------------HHHHHHHHH
Confidence            87431  0 00                                   0        00              001123556


Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++
T Consensus        95 ~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~  174 (263)
T 3moy_A           95 SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAE  174 (263)
T ss_dssp             HHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHH
T ss_pred             HHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCCCCHH
Confidence            78899999999999999999999999999999999999999999999999874 57899999999999999999999999


Q ss_pred             HHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ||+++|||+++++. +++.+.+.+++++|+..+|.+++.+|+++++....+++++
T Consensus       175 eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  228 (263)
T 3moy_A          175 EAERVGLVSRIVPA-ADLLDEALAVAQRIARMSRPAGRAVKDAINEAFERPLSAG  228 (263)
T ss_dssp             HHHHTTSCSEEECG-GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             HHHHCCCccEecCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999 9999999999999999999999999999999988888765

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=1.6e-42  Score=297.36  Aligned_cols=204  Identities=22%  Similarity=0.242  Sum_probs=184.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++..     +       
T Consensus        16 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~-----~-------   75 (255)
T 3p5m_A           16 VLRIRLDRPEKLNAVDTPML--------EELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT-----A-------   75 (255)
T ss_dssp             EEEEEECCGGGTTEECHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH-----H-------
T ss_pred             EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc-----h-------
Confidence            88999999999999999998        999999999999999999999999999999999876521     0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                                          .+...+..++..+.++|||+||+|+|+|
T Consensus        76 ----------------------------------------------------~~~~~~~~~~~~l~~~~kPvIAav~G~a  103 (255)
T 3p5m_A           76 ----------------------------------------------------GAADAANRVVRAITSLPKPVIAGVHGAA  103 (255)
T ss_dssp             ----------------------------------------------------HHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred             ----------------------------------------------------HHHHHHHHHHHHHHhCCCCEEEEeCCee
Confidence                                                                0011233566778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ ++++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       104 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  182 (255)
T 3p5m_A          104 VGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSA-DE  182 (255)
T ss_dssp             ETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCT-TC
T ss_pred             hhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCH-HH
Confidence            999999999999999999999999999999999885 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|+..||.+++.+|+++++....+++++
T Consensus       183 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  220 (255)
T 3p5m_A          183 YESVLTDVLRSVSGGPTLAFGWTKRALAAATLAELEPV  220 (255)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999999888887765

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=3.8e-43  Score=301.79  Aligned_cols=211  Identities=18%  Similarity=0.210  Sum_probs=178.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.....          
T Consensus        16 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~----------   77 (256)
T 3qmj_A           16 VRTLTLNRPEALNAFNEALY--------DATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARIT----------   77 (256)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHH----------
T ss_pred             EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccc----------
Confidence            88999999999999999988        999999999999999999999999999999999988743100          


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                . .      +..              .....+..++..+.++|||+||+|+|+|
T Consensus        78 --------------------------~-~------~~~--------------~~~~~~~~~~~~l~~~~kPvIAav~G~a  110 (256)
T 3qmj_A           78 --------------------------D-P------NFS--------------EGKFGFRGLIKALAGFPKPLICAVNGLG  110 (256)
T ss_dssp             --------------------------S-S------SCC--------------CCSSHHHHHHHHHHHCCSCEEEEECSEE
T ss_pred             --------------------------c-h------hHH--------------HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                      0 0      000              0011234567788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       111 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  189 (256)
T 3qmj_A          111 VGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSP-EE  189 (256)
T ss_dssp             ETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHTSSSEEECG-GG
T ss_pred             hhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCH-hH
Confidence            999999999999999999999999999999999885 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|+..||.+++.+|+++++....+++++
T Consensus       190 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  227 (256)
T 3qmj_A          190 LLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAA  227 (256)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            99999999999999999999999999998877776654

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=2.6e-42  Score=295.78  Aligned_cols=210  Identities=18%  Similarity=0.189  Sum_probs=184.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc-CCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g-~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+| .|+.||+|+|++++....  ..      
T Consensus        10 v~~itlnrp~~~Nal~~~~~--------~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~--~~------   73 (250)
T 2a7k_A           10 VRVITLDHPNKHNPFSRTLE--------TSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLS--RS------   73 (250)
T ss_dssp             EEEEEECCSSTTCBCCHHHH--------HHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC---CH------
T ss_pred             EEEEEecCCCccCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcC--ch------
Confidence            78899999999999999888        99999999999999999999999 999999999998764200  00      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                          +  ..           ..+...+..++..+.++|||+||+|+|+
T Consensus        74 ------------------------------------~--~~-----------~~~~~~~~~~~~~i~~~~kPvIAav~G~  104 (250)
T 2a7k_A           74 ------------------------------------E--DI-----------EEWIDRVIDLYQAVLNVNKPTIAAVDGY  104 (250)
T ss_dssp             ------------------------------------H--HH-----------HHHHHHHHHHHHHHHTCCSCEEEEECSE
T ss_pred             ------------------------------------h--hH-----------HHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence                                                0  00           0112223456678899999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      |+|||++|+++||+++++++++|++||.++|++|++++.++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       105 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  183 (250)
T 2a7k_A          105 AIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SA  183 (250)
T ss_dssp             EETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HH
T ss_pred             EeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHHHHHHHhHHHHHHHHHHcCCcccHHHHHHcCCcceecCH-HH
Confidence            99999999999999999999999999999999998754499999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +.+.+.+++++|++.||.+++.+|+.+++....++++
T Consensus       184 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~  220 (250)
T 2a7k_A          184 LLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQ  220 (250)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHH
Confidence            9999999999999999999999999999876655544

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.6e-42  Score=296.76  Aligned_cols=209  Identities=19%  Similarity=0.230  Sum_probs=182.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|++++....           
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-----------   73 (257)
T 2ej5_A           13 VAWLTLNRPDQLNAFTEQMN--------AEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEM-----------   73 (257)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC------------------
T ss_pred             EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhcc-----------
Confidence            88899999999999999888        99999999999999999999999999999999998763200           


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +....           ...  .+..++..+.++|||+||+|+|+|
T Consensus        74 -----------------------------------~~~~~-----------~~~--~~~~~~~~l~~~~kPvIAav~G~a  105 (257)
T 2ej5_A           74 -----------------------------------DHGDV-----------LRS--RYAPMMKALHHLEKPVVAAVNGAA  105 (257)
T ss_dssp             -----------------------------------CHHHH-----------HHH--THHHHHHHHHHCCSCEEEEECSEE
T ss_pred             -----------------------------------chhHH-----------HHH--HHHHHHHHHHhCCCCEEEEECccc
Confidence                                               00000           000  123456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+.++ +++++++|..++++++++|+.++++||+++|||+++++. ++
T Consensus       106 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  184 (257)
T 2ej5_A          106 AGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPL-SD  184 (257)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEECG-GG
T ss_pred             cchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCcceecCh-hH
Confidence            9999999999999999999999999999999998854 789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|+..||.+++.+|+.+++....+++++
T Consensus       185 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  222 (257)
T 2ej5_A          185 WEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRY  222 (257)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999998877777654

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=2.1e-42  Score=299.32  Aligned_cols=215  Identities=20%  Similarity=0.266  Sum_probs=187.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|++++...  . ...     
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~-~~~-----   76 (269)
T 1nzy_A           13 VAEITIKLPRHRNALSVKAM--------QEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLD--K-GVA-----   76 (269)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSS--S-HHH-----
T ss_pred             EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhc--c-ccc-----
Confidence            88999999999999999888        9999999999999999999999999999999999876320  0 000     


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 +..     +     .        ...+...+..++..+.++|||+||+|+|+|
T Consensus        77 ---------------------------~~~-----~-----~--------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  111 (269)
T 1nzy_A           77 ---------------------------GVR-----D-----H--------FRIAALWWHQMIHKIIRVKRPVLAAINGVA  111 (269)
T ss_dssp             ---------------------------HHH-----H-----H--------HHHHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred             ---------------------------ChH-----H-----H--------HHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                       000     0     0        001112234566788899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|++++ +++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       112 ~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  190 (269)
T 1nzy_A          112 AGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DE  190 (269)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECH-HH
T ss_pred             ecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HH
Confidence            9999999999999999999999999999999998854 789999999999999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus       191 l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  228 (269)
T 1nzy_A          191 FREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEEC  228 (269)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            99999999999999999999999999999887777654

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=8.7e-42  Score=294.80  Aligned_cols=208  Identities=21%  Similarity=0.306  Sum_probs=185.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc-CCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG-DSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g-~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++.+|||+| ++|+++..++        .+|.+++++++.|+++++|||+| .|+.||+|+|++++..  . ....    
T Consensus        19 v~~itlnrp-~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~--~-~~~~----   82 (265)
T 2ppy_A           19 IAEIHLHIN-KSNSYDLEFY--------KEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS--A-DPRF----   82 (265)
T ss_dssp             EEEEEECSS-TTCCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT--S-CHHH----
T ss_pred             EEEEEECCC-CCCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc--c-chhH----
Confidence            888999999 9999999888        99999999999999999999999 9999999999987642  0 0000    


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHH-HHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTC-SDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~kpvIa~v~G  195 (315)
                                                            .              .+...+ ..++..+.++|||+||+|+|
T Consensus        83 --------------------------------------~--------------~~~~~~~~~~~~~l~~~~kPvIAav~G  110 (265)
T 2ppy_A           83 --------------------------------------K--------------TQFCLFCNETLDKIARSPQVYIACLEG  110 (265)
T ss_dssp             --------------------------------------H--------------HHHHHHHHHHHHHHHHSSSEEEEEECS
T ss_pred             --------------------------------------H--------------HHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence                                                  0              011122 34667788999999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCc-eeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        196 VAAAAGCQLVATCDLAIATTAS-KFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a-~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +|+|||++|+++||++++++++ +|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|||+++++.
T Consensus       111 ~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~  190 (265)
T 2ppy_A          111 HTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQ  190 (265)
T ss_dssp             EEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSEEECG
T ss_pred             EEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecCH
Confidence            9999999999999999999999 9999999999999885 4789999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        274 NEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       274 ~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                       +++.+.+.+++++|+..+|.+++.+|+++++....+++++
T Consensus       191 -~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  230 (265)
T 2ppy_A          191 -AETRERTREYARKLANSATYAVSNIKLAIMNGKEMPLNVA  230 (265)
T ss_dssp             -GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             -HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence             9999999999999999999999999999999888777664

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=3.1e-42  Score=298.97  Aligned_cols=214  Identities=20%  Similarity=0.215  Sum_probs=184.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++++.....  .       
T Consensus        19 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~--~-------   81 (276)
T 2j5i_A           19 IAFVILNRPEKRNAMSPTLN--------REMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVD--A-------   81 (276)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHH--H-------
T ss_pred             EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccc--c-------
Confidence            78899999999999999888        999999999999999999999999999999999987642000  0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHH-HHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDL-MLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~kpvIa~v~G~  196 (315)
                                                ...      +..             ..+....... +..+.++|||+||+|+|+
T Consensus        82 --------------------------~~~------~~~-------------~~~~~~~~~~~~~~l~~~~kPvIAav~G~  116 (276)
T 2j5i_A           82 --------------------------GPE------ILQ-------------EKIRREASQWQWKLLRMYAKPTIAMVNGW  116 (276)
T ss_dssp             --------------------------SCT------THH-------------HHHHHHHHHHHTTTTTTCSSCEEEEECSC
T ss_pred             --------------------------chh------HHH-------------HHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence                                      000      000             0011111222 456788999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|||+++++. +
T Consensus       117 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~  195 (276)
T 2j5i_A          117 CFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPL-A  195 (276)
T ss_dssp             EEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECH-H
T ss_pred             eehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCccEeeCH-H
Confidence            9999999999999999999999999999999999875 4789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       196 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  234 (276)
T 2j5i_A          196 QLREVTIELARNLLEKNPVVLRAAKHGFKRCRELTWEQN  234 (276)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999999887777654

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=1.1e-42  Score=294.27  Aligned_cols=206  Identities=19%  Similarity=0.236  Sum_probs=181.6

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+| ++|+++..++        .+|.+++++++.|+  ++|||+|.|+.||+|.|++++...    +..     
T Consensus        16 v~~itlnrp-~~Nal~~~~~--------~~L~~al~~~~~d~--~~vvltg~g~~F~aG~Dl~~~~~~----~~~-----   75 (232)
T 3ot6_A           16 VATLTLNNG-KVNAISPDVI--------IAFNAALDQAEKDR--AIVIVTGQPGILSGGYDLKVMTSS----AEA-----   75 (232)
T ss_dssp             EEEEEECCT-TTTCBCHHHH--------HHHHHHHHHHHHTT--CEEEEECBTEEEECCBCHHHHHHC----HHH-----
T ss_pred             EEEEEECCC-CCCCCCHHHH--------HHHHHHHHHHhcCC--CEEEEECCCCCccCCcCHHHHhhC----hHH-----
Confidence            889999998 5799999888        99999999998764  899999999999999999887430    000     


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                          .              ..+......++..+.++|||+||+|+|+|
T Consensus        76 ------------------------------------~--------------~~~~~~~~~~~~~l~~~~kPvIAav~G~a  105 (232)
T 3ot6_A           76 ------------------------------------A--------------INLVAQGSTLARRMLSHPFPIIVACPGHA  105 (232)
T ss_dssp             ------------------------------------H--------------HHHHHHHHHHHHHHHTCSSCEEEECCEEE
T ss_pred             ------------------------------------H--------------HHHHHHHHHHHHHHHcCCCCEEEEECCEe
Confidence                                                0              01222344577788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      +|||++|+++||+++++++ ++|++||.++|++|.. +.+++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus       106 ~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~-~  184 (232)
T 3ot6_A          106 VAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSV-E  184 (232)
T ss_dssp             ETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEECT-T
T ss_pred             ehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCCCEecCH-H
Confidence            9999999999999999997 8999999999998655 55788999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       185 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  223 (232)
T 3ot6_A          185 ELQGAALAVAAQLKKINMNAHKKTKLKVRKGLLDTLDAA  223 (232)
T ss_dssp             THHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhHHHHH
Confidence            999999999999999999999999999999887777765

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=3.2e-42  Score=298.31  Aligned_cols=219  Identities=20%  Similarity=0.265  Sum_probs=189.1

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.
T Consensus        28 ~~v~~~~~~~----v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~   95 (276)
T 3rrv_A           28 TEIDVRADGA----LRIITLNRPDSLNSVNDDLH--------VGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLK   95 (276)
T ss_dssp             TTEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHH
T ss_pred             CeEEEEEECC----EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHh
Confidence            3454443 65    88999999999999999988        99999999999999999999999999999999998775


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ....                                             |...           ...+...+..++..+.
T Consensus        96 ~~~~---------------------------------------------~~~~-----------~~~~~~~~~~~~~~l~  119 (276)
T 3rrv_A           96 ELSA---------------------------------------------DADL-----------RAKTIRDGREIVLGMA  119 (276)
T ss_dssp             HHHH---------------------------------------------CHHH-----------HHHHHHHHHHHHHHHH
T ss_pred             hccc---------------------------------------------chHH-----------HHHHHHHHHHHHHHHH
Confidence            3100                                             0000           0012333456777889


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+
T Consensus       120 ~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~eA~  199 (276)
T 3rrv_A          120 RCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAV  199 (276)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHHHHHHCCCEEHHHHH
T ss_pred             hCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999885 47899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|||++++   +++.+.+.+++++|+..||.+++.+|+++++....+++++
T Consensus       200 ~~GLv~~vv---~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~  248 (276)
T 3rrv_A          200 ELGLANHVA---DDPVAEAIACAKKILELPQQAVESTKRVLNIHLERAVLAS  248 (276)
T ss_dssp             HHTSCSEEE---SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHH
Confidence            999999999   4799999999999999999999999999998766555543

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=4.4e-42  Score=296.26  Aligned_cols=217  Identities=17%  Similarity=0.169  Sum_probs=184.7

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.
T Consensus         5 ~~v~~~~~~~----v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~   72 (266)
T 3fdu_A            5 PHLNANLEGG----VLTLAINRPEAKNALYGELY--------LWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFM   72 (266)
T ss_dssp             TTEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHH
T ss_pred             CeEEEEEECC----EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHh
Confidence            3444443 55    88999999999999999988        99999999999999999999999999999999998875


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ....                                    .+..     +..               .......++..+.
T Consensus        73 ~~~~------------------------------------~~~~-----~~~---------------~~~~~~~~~~~l~   96 (266)
T 3fdu_A           73 GFVQ------------------------------------NPNA-----GPA---------------GQVPPFVLLKSAA   96 (266)
T ss_dssp             HHHH------------------------------------SCCC-----SCG---------------GGSHHHHHHHHHH
T ss_pred             hhcc------------------------------------ccch-----hhH---------------HHHHHHHHHHHHH
Confidence            2000                                    0000     000               0111235667889


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+
T Consensus        97 ~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~i~A~eA~  176 (266)
T 3fdu_A           97 RLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETAL  176 (266)
T ss_dssp             HCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHH
T ss_pred             hCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHH
Confidence            99999999999999999999999999999999999999999999999885 47899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      ++|||+++++   ++.+.+.+++++|++.||.+++.+|+++++.. .++++
T Consensus       177 ~~GLv~~vv~---~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~-~~l~~  223 (266)
T 3fdu_A          177 QAGLVNEIVE---DAYATAQATAQHLTALPLASLKQTKALMKHDL-DQIIE  223 (266)
T ss_dssp             HTTSCSEECS---CHHHHHHHHHHHHHTSCHHHHHHHHHHHTTTH-HHHHH
T ss_pred             HCCCHHHHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh-ccHHH
Confidence            9999999998   69999999999999999999999999998754 33443

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=4.8e-42  Score=295.26  Aligned_cols=208  Identities=23%  Similarity=0.267  Sum_probs=184.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|++++...  . ..      
T Consensus        15 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~-~~------   77 (258)
T 2pbp_A           15 VGIIELARPDVLNALSRQMV--------AEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKD--D-PI------   77 (258)
T ss_dssp             EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTC--C-HH------
T ss_pred             EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc--c-ch------
Confidence            78899999999999999888        9999999999999999999999999999999999876420  0 00      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                          ......          .    + ..+..+.++|||+||+|+|+|
T Consensus        78 ------------------------------------~~~~~~----------~----~-~~~~~l~~~~kPvIAav~G~a  106 (258)
T 2pbp_A           78 ------------------------------------RLEWLN----------Q----F-ADWDRLSIVKTPMIAAVNGLA  106 (258)
T ss_dssp             ------------------------------------HHHHHC----------T----T-HHHHHHHTCCSCEEEEECSEE
T ss_pred             ------------------------------------hHHHHH----------H----H-HHHHHHHhCCCCEEEEEcCEE
Confidence                                                000000          0    1 234567899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       107 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  185 (258)
T 2pbp_A          107 LGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSP-EL  185 (258)
T ss_dssp             ETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECG-GG
T ss_pred             EhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCh-HH
Confidence            999999999999999999999999999999999875 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|+..+|.+++.+|+.+++....+++++
T Consensus       186 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  223 (258)
T 2pbp_A          186 LMEETMRLAGRLAEQPPLALRLIKEAVQKAVDYPLYEG  223 (258)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999998887777654

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=9.4e-43  Score=299.62  Aligned_cols=209  Identities=24%  Similarity=0.311  Sum_probs=183.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.....          
T Consensus        21 va~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~----------   82 (262)
T 3r9q_A           21 VTTVILNRPHARNAVDGPTA--------AALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRG----------   82 (262)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTS----------
T ss_pred             EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccCh----------
Confidence            88999999999999999988        999999999999999999999999999999999987643100          


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                  .      ++..  ..  +.            ..+..+.++|||+||+|+|+|
T Consensus        83 ----------------------------~------~~~~--~~--~~------------~~~~~~~~~~kPvIAav~G~a  112 (262)
T 3r9q_A           83 ----------------------------N------ELHP--HG--PG------------PMGPSRLRLSKPVIAAISGHA  112 (262)
T ss_dssp             ----------------------------C------CCCT--TS--SC------------TTSSTTCCCSSCEEEEECSEE
T ss_pred             ----------------------------h------hHHH--hh--hh------------HHHHHHHhCCCCEEEEECCee
Confidence                                        0      0000  00  00            011124589999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+.+ .+++++++|..++++++++|+.++++||+++|||+++++. ++
T Consensus       113 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~  191 (262)
T 3r9q_A          113 VAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVAR-GQ  191 (262)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TC
T ss_pred             ehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEecCh-hH
Confidence            999999999999999999999999999999999885 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      +.+.+.+++++|++.||.+++.+|+++++....++++++
T Consensus       192 l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l  230 (262)
T 3r9q_A          192 AREAAETLAAEIAAFPQQCVRADRDSAIAQWGMAEEAAL  230 (262)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHH
Confidence            999999999999999999999999999999888887653

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=6.9e-43  Score=303.09  Aligned_cols=224  Identities=19%  Similarity=0.247  Sum_probs=184.3

Q ss_pred             ceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhh
Q psy12573         26 CIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        26 ~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      .+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++..
T Consensus        12 ~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~   79 (274)
T 3tlf_A           12 TIKYEVDGH----TATITLNRPDALNALSPHMI--------TELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPE   79 (274)
T ss_dssp             SEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC------
T ss_pred             ceEEEEECC----EEEEEECCccccCCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhh
Confidence            454443 65    88999999999999999988        999999999999999999999999999999999987643


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhc
Q psy12573        105 DKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILR  184 (315)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  184 (315)
                      ...   .                      .   .    ..+..    .....+               ..+..++..+.+
T Consensus        80 ~~~---~----------------------~---~----~~~~~----~~~~~~---------------~~~~~~~~~l~~  108 (274)
T 3tlf_A           80 DGK---V----------------------I---Y----ERPYL----STYDQW---------------EAPQEGTPPFRT  108 (274)
T ss_dssp             ----------------------------------------CTT----CSGGGG---------------SCCCTTCCCTTS
T ss_pred             ccc---c----------------------c---c----ccchh----hHHHHH---------------HHHHHHHHHHHh
Confidence            100   0                      0   0    00000    000000               011123445778


Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCC--CCCHHHH
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGI--PISAQDA  261 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~--~~~a~~a  261 (315)
                      +|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++| . +++++++++|..++++++++|+  .++++||
T Consensus       109 ~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~~A~~l~ltg~~~~~~A~eA  187 (274)
T 3tlf_A          109 MAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPRSIALRMALMGKHERMSAQRA  187 (274)
T ss_dssp             CCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCHHHHHHHHHHGGGCCEEHHHH
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCHHHHHHHHHcCCCCccCHHHH
Confidence            9999999999999999999999999999999999999999999999 6 4578999999999999999999  9999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +++|||+++++. +++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       188 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  239 (274)
T 3tlf_A          188 YELGLISEIVEH-DRLLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEA  239 (274)
T ss_dssp             HHHTSSSEEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHCCCCCeecCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999 9999999999999999999999999999999988888765

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=4.2e-43  Score=302.86  Aligned_cols=219  Identities=16%  Similarity=0.171  Sum_probs=187.6

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.
T Consensus         9 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~   76 (265)
T 3swx_A            9 ETLRIRRDGY----VLVIGLNRPAKRNAFDKTML--------EELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVA   76 (265)
T ss_dssp             SSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHH
T ss_pred             ceEEEEEECC----EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHh
Confidence            4454443 55    88999999999999999988        99999999999999999999999999999999999875


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH-
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI-  182 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-  182 (315)
                      .....                                   ....+.         +.              ....+..+ 
T Consensus        77 ~~~~~-----------------------------------~~~~~~---------~~--------------~~~~~~~l~   98 (265)
T 3swx_A           77 AEIQG-----------------------------------GASLTP---------EG--------------GINPWQVDG   98 (265)
T ss_dssp             HHHC-------------------------------------CCCCC---------TT--------------CCCTTCCSS
T ss_pred             hcccc-----------------------------------hhHHHH---------HH--------------HHHHHHHHH
Confidence            31000                                   000000         00              00112245 


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||
T Consensus        99 ~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA  178 (265)
T 3swx_A           99 RQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEA  178 (265)
T ss_dssp             CCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHTTCCCEEHHHH
T ss_pred             HhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHHHHHHHHcCCcCCHHHH
Confidence            789999999999999999999999999999999999999999999999885 4789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +++|+|+++++. +++.+.+.+++++|+..||.+++.+|+++++....+++++
T Consensus       179 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  230 (265)
T 3swx_A          179 HRIGIVQEIVPV-GEHVDTAIAIAQTIARQAPLGVQATLRNARLAVREGDAAA  230 (265)
T ss_dssp             HHTTSCSEEEST-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHcCCCCEecCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999999 9999999999999999999999999999999877777654

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=1.8e-42  Score=300.91  Aligned_cols=222  Identities=20%  Similarity=0.264  Sum_probs=178.9

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.
T Consensus        20 ~~v~~~~~~~----v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~   87 (278)
T 4f47_A           20 PDALVEQRGH----TLIVTMNRPSRRNALSGEMM--------QIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAAT   87 (278)
T ss_dssp             CSEEEEEETT----EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCCC---------
T ss_pred             CceEEEEECC----EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhh
Confidence            4454443 65    88999999999999999988        99999999999999999999999999999999998764


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ....  .                                   ..+.   +.... .          ..+    ..+..+.
T Consensus        88 ~~~~--~-----------------------------------~~~~---~~~~~-~----------~~~----~~l~~~~  112 (278)
T 4f47_A           88 KKPP--G-----------------------------------DSFK---DGSYD-P----------SRI----DALLKGR  112 (278)
T ss_dssp             -----------------------------------------------------C-T----------TCB----TTTTBSC
T ss_pred             ccch--h-----------------------------------hhHH---HHHHH-H----------HHH----HHHHHhc
Confidence            3100  0                                   0000   00000 0          000    0111223


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .++|++++|..++++++++|+.++++||+
T Consensus       113 ~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltg~~~~a~eA~  192 (278)
T 4f47_A          113 RLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAK  192 (278)
T ss_dssp             CCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHH
T ss_pred             CCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHH
Confidence            89999999999999999999999999999999999999999999999875 57899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|+|+++++. +++.+.+.+++++|+..+|.+++.+|+++++....+++++
T Consensus       193 ~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  243 (278)
T 4f47_A          193 EMGLVGHVVPD-GQALTKALEIAEIIAANGPLAVQAILRTIRETEGMHENEA  243 (278)
T ss_dssp             HTTSCSEEECT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             HCCCceEeeCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            99999999999 9999999999999999999999999999999988888765

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=5.3e-42  Score=294.34  Aligned_cols=213  Identities=23%  Similarity=0.327  Sum_probs=186.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|++++.......+       
T Consensus         9 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-------   73 (253)
T 1uiy_A            9 VAVVFLNDPERRNPLSPEMA--------LSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGA-------   73 (253)
T ss_dssp             EEEEEECCGGGTCCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCH-------
T ss_pred             EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCc-------
Confidence            78899999999999999888        999999999999999999999999999999999987642000000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                           .   +.       . .....+..++..+.++|||+||+|+|+|
T Consensus        74 -------------------------------------~---~~-------~-~~~~~~~~~~~~i~~~~kPvIAav~G~a  105 (253)
T 1uiy_A           74 -------------------------------------E---EN-------Y-RHSLSLMRLFHRVYTYPKPTVAAVNGPA  105 (253)
T ss_dssp             -------------------------------------H---HH-------H-HHHHHHHHHHHHHHHCSSCEEEEECSCE
T ss_pred             -------------------------------------h---hH-------H-HHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                                 0   00       0 0000134566778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++++++++++|..++++++++|+.++++||+++|+|+++++. +++
T Consensus       106 ~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l  184 (253)
T 1uiy_A          106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKA  184 (253)
T ss_dssp             ETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCH
T ss_pred             eHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHCCCcceecCh-hHH
Confidence            9999999999999999999999999999999998776689999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      .+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus       185 ~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  221 (253)
T 1uiy_A          185 LEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDG  221 (253)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            9999999999999999999999999999888777654

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=5.5e-42  Score=295.86  Aligned_cols=216  Identities=20%  Similarity=0.295  Sum_probs=184.4

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++ ..
T Consensus         9 ~~v~~~~~~~----v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~   75 (265)
T 3rsi_A            9 RELLVERDGP----VVILTMNRPHRRNALSTNMV--------SQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DG   75 (265)
T ss_dssp             CCEEEEEETT----EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSEECC------
T ss_pred             CcEEEEEECC----EEEEEEcCcccccCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-cc
Confidence            3444443 55    88999999999999999988        99999999999999999999999999999999987 11


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHH-HHHHH
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSD-LMLSI  182 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  182 (315)
                      .    .+.                                 ...+                       ...... ++..+
T Consensus        76 ~----~~~---------------------------------~~~~-----------------------~~~~~~~~~~~l   95 (265)
T 3rsi_A           76 W----MVR---------------------------------DGSA-----------------------PPLDPATIGKGL   95 (265)
T ss_dssp             ---------------------------------------------------------------------CCCHHHHHHHT
T ss_pred             c----ccc---------------------------------hHHH-----------------------HHHhHHHHHHHH
Confidence            0    000                                 0000                       000112 45567


Q ss_pred             -h--cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCH
Q psy12573        183 -L--RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISA  258 (315)
Q Consensus       183 -~--~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a  258 (315)
                       .  ++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|+++ ++++++++|..++++++++|+.+++
T Consensus        96 ~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a  175 (265)
T 3rsi_A           96 LLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTA  175 (265)
T ss_dssp             TSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEH
T ss_pred             HHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCH
Confidence             7  89999999999999999999999999999999999999999999999875 5789999999999999999999999


Q ss_pred             HHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        259 QDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       259 ~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +||+++|+|+++++. +++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       176 ~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  230 (265)
T 3rsi_A          176 FEAYHFGLVGHVVPA-GTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWLAEEDA  230 (265)
T ss_dssp             HHHHHTTSCSEEEST-TCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHCCCccEecCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999999999 9999999999999999999999999999999988888765

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=1e-42  Score=298.17  Aligned_cols=210  Identities=27%  Similarity=0.356  Sum_probs=184.8

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.
T Consensus         9 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~   76 (256)
T 3pe8_A            9 PVLLVDTTDR----VRTLTLNRPQSRNALSAELR--------STFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELG   76 (256)
T ss_dssp             CSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-
T ss_pred             CcEEEEEECC----EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHh
Confidence            4454443 55    88999999999999999998        99999999999999999999999999999999998764


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ..                                        ..+      .                     .....+.
T Consensus        77 ~~----------------------------------------~~~------~---------------------~~~~~l~   89 (256)
T 3pe8_A           77 DT----------------------------------------TEL------P---------------------DISPKWP   89 (256)
T ss_dssp             ---------------------------------------------------------------------------CCCCC
T ss_pred             hh----------------------------------------HHH------H---------------------HHHHHHH
Confidence            20                                        000      0                     0012356


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|+++ ++++++++|..++++++++|+.++++||+
T Consensus        90 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~a~eA~  169 (256)
T 3pe8_A           90 DMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDAL  169 (256)
T ss_dssp             CCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHH
T ss_pred             hCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHHHHHcCCCCCHHHHH
Confidence            89999999999999999999999999999999999999999999999884 57899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|+|+++++. +++.+.+.+++++|++.||.+++.+|++++.....+++++
T Consensus       170 ~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~  220 (256)
T 3pe8_A          170 RAGLVTEVVAH-DDLLTAARRVAASIVGNNQKAVRALLDSYHRIDALQTGGA  220 (256)
T ss_dssp             HHTSCSCEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCeEEeCH-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            99999999999 9999999999999999999999999999998877666654

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.5e-42  Score=303.40  Aligned_cols=227  Identities=19%  Similarity=0.206  Sum_probs=179.9

Q ss_pred             CceEEeC-C-ChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         25 NCIIVGE-G-ANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        25 ~~~~~~~-g-~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      +.+.+.. + +    ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++
T Consensus        29 ~~v~~~~~~~~----Va~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~   96 (298)
T 3qre_A           29 DAVLYEATPGG----VAIITFNRADRLNAWGPDLA--------AGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSA   96 (298)
T ss_dssp             CSEEEEECTTS----EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----
T ss_pred             CeEEEEEeCCC----EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHH
Confidence            4555543 6 5    88999999999999999988        9999999999999999999999999999999999876


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ..........                                +.    ..+...              +......++..+
T Consensus        97 ~~~~~~~~~~--------------------------------~~----~~~~~~--------------~~~~~~~~~~~l  126 (298)
T 3qre_A           97 DAAAGYDKTM--------------------------------AK----AKDANL--------------ADLVGERPPHFV  126 (298)
T ss_dssp             --------------------------------------------------------------------------CCTTGG
T ss_pred             hhcccccccc--------------------------------cc----chhHHH--------------HHHHHHHHHHHH
Confidence            4200000000                                00    000000              000011233467


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++||||||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ ++++++++|..++++++++|+.++++||
T Consensus       127 ~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ellltg~~i~A~eA  206 (298)
T 3qre_A          127 TMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEA  206 (298)
T ss_dssp             GGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHHHHHHHHHHCCEEEHHHH
T ss_pred             HhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHHHHHHHHHcCCCCCHHHH
Confidence            899999999999999999999999999999999999999999999999874 5789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhCCChhhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILEN-SRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~-~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +++|||+++++. +++.+.+.+++++|+.. ||.+++.+|+++++....+++++
T Consensus       207 ~~~GLV~~vv~~-~~l~~~a~~~A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~  259 (298)
T 3qre_A          207 AQLGLVKEVVTP-EQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEA  259 (298)
T ss_dssp             HHTTSCSEEECG-GGHHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGGC-----
T ss_pred             HHcCCCeEecCH-HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            999999999999 99999999999999998 99999999999999887776654

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=4.3e-42  Score=297.24  Aligned_cols=205  Identities=19%  Similarity=0.226  Sum_probs=182.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+ +|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.....          
T Consensus        24 v~~itlnrp~-~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~----------   84 (272)
T 3qk8_A           24 VLNLVLDSPG-LNSVGPQMH--------RDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIG----------   84 (272)
T ss_dssp             EEEEEECCHH-HHEECHHHH--------HHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHH----------
T ss_pred             EEEEEECCCC-cCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhcccc----------
Confidence            8899999999 999999988        999999999999999999999999999999999988743100          


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                         +...           ...+......++..+.++||||||+|+|+|
T Consensus        85 -----------------------------------~~~~-----------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  118 (272)
T 3qk8_A           85 -----------------------------------DYEG-----------RIRIMREARDLVLNLVNLDKPVVSAIRGPA  118 (272)
T ss_dssp             -----------------------------------CHHH-----------HHHHHHHHHHHHHHHHTCCSCEEEEECSEE
T ss_pred             -----------------------------------chHH-----------HHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                               0000           001223345677788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||+++|++|+.+ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       119 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~  197 (272)
T 3qk8_A          119 VGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDD-DE  197 (272)
T ss_dssp             EHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GG
T ss_pred             ehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEeeCH-hH
Confidence            999999999999999999999999999999999885 5789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      +.+.+.+++++|+..||.+++.+|+++++...
T Consensus       198 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~  229 (272)
T 3qk8_A          198 VLPTATRLAENLAQGAQNAIRWTKRSLNHWYR  229 (272)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999987543

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=2e-41  Score=291.97  Aligned_cols=214  Identities=18%  Similarity=0.164  Sum_probs=181.8

Q ss_pred             CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhH
Q psy12573         23 PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELET  101 (315)
Q Consensus        23 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~  101 (315)
                      +.+.+.+.. ++    ++++|||||+++|+++..++        .+|.+++++++.| ++|+|||||.|+.||+|+|+++
T Consensus         5 ~~~~i~~~~~~~----v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~   71 (267)
T 3hp0_A            5 TYQTIKVRFQAS----VCYITFHRPEANNTINDTLI--------EECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQE   71 (267)
T ss_dssp             CCSSEEEEEETT----EEEEEECCGGGTTCBCSHHH--------HHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHH
T ss_pred             CCceEEEEEECC----EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHH
Confidence            344555543 55    88999999999999999998        9999999999986 6999999999999999999988


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573        102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS  181 (315)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (315)
                      +.....+                                    +.      +..              .....+..++..
T Consensus        72 ~~~~~~~------------------------------------~~------~~~--------------~~~~~~~~~~~~   95 (267)
T 3hp0_A           72 IYQEMKR------------------------------------GR------KQA--------------SSQEPLYDLWMK   95 (267)
T ss_dssp             HHHTTTT------------------------------------TC------CSC--------------CCCHHHHHHHHH
T ss_pred             HHhcccC------------------------------------hH------HHH--------------HHHHHHHHHHHH
Confidence            7531000                                    00      000              011223456778


Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      +.++||||||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++++++++++|..++++++++|+.++++||
T Consensus        96 l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~vG~~~A~ellltg~~i~A~eA  175 (267)
T 3hp0_A           96 LQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKAHYMTLMTKPISVQEA  175 (267)
T ss_dssp             HHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCCBCHHHH
T ss_pred             HHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhHHHHHHHHhCHHHHHHHHHcCCCCCHHHH
Confidence            89999999999999999999999999999999999999999999999999877889999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      +++|||+++++. .+  +.+.+++++|+..||.+++.+|+++++...
T Consensus       176 ~~~GLV~~vv~~-~~--~~~~~~a~~la~~~p~a~~~~K~~l~~~~~  219 (267)
T 3hp0_A          176 SEWGLIDAFDAE-SD--VLLRKHLLRLRRLNKKGIAHYKQFMSSLDH  219 (267)
T ss_dssp             HHHTSSSCBCSC-TT--HHHHHHHHHHTTSCHHHHHHHHHHHHHHCC
T ss_pred             HHCCCcceecCC-HH--HHHHHHHHHHHhCCHHHHHHHHHHHHhccc
Confidence            999999999986 43  357889999999999999999999998643

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=1.7e-41  Score=293.72  Aligned_cols=211  Identities=18%  Similarity=0.273  Sum_probs=184.4

Q ss_pred             HhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHH
Q psy12573         37 DIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEI  115 (315)
Q Consensus        37 ~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~  115 (315)
                      .++.+|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.| +.||+|+|++++...  . +.    
T Consensus        21 ~v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~--~-~~----   85 (272)
T 1hzd_A           21 GIVVLGINRAYGKNSLSKNLI--------KMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM--S-SS----   85 (272)
T ss_dssp             TEEEEEECCGGGTTCBCTTHH--------HHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS--C-HH----
T ss_pred             CEEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc--C-hH----
Confidence            388999999999999999998        9999999999999999999999998 689999999876420  0 00    


Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                                                           +.              ..+...+..++..+.++||||||+|+|
T Consensus        86 -------------------------------------~~--------------~~~~~~~~~~~~~l~~~~kPvIAav~G  114 (272)
T 1hzd_A           86 -------------------------------------EV--------------GPFVSKIRAVINDIANLPVPTIAAIDG  114 (272)
T ss_dssp             -------------------------------------HH--------------HHHHHHHHHHHHHHHTCSSCEEEEESE
T ss_pred             -------------------------------------HH--------------HHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence                                                 00              011122345667889999999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN  274 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~  274 (315)
                      +|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|||+++++. 
T Consensus       115 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-  193 (272)
T 1hzd_A          115 LALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ-  193 (272)
T ss_dssp             EEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECC-
T ss_pred             eEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCcceecCh-
Confidence            99999999999999999999999999999999999885 5789999999999999999999999999999999999998 


Q ss_pred             hH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        275 EE----LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       275 ~~----~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++    +.+.+.+++++++..+|.+++.+|+++++....+++++
T Consensus       194 ~~l~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  237 (272)
T 1hzd_A          194 NQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTG  237 (272)
T ss_dssp             CTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            66    45678899999999999999999999999888777654

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=4.7e-42  Score=294.44  Aligned_cols=212  Identities=23%  Similarity=0.333  Sum_probs=185.7

Q ss_pred             ceEEe-CCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhh
Q psy12573         26 CIIVG-EGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        26 ~~~~~-~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      .+.+. +++    ++++|||+|+++|++|..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++..
T Consensus         8 ~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~   75 (256)
T 3trr_A            8 EVLIEQRDR----VLLITINRPDARNAVNRAVS--------QGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVS   75 (256)
T ss_dssp             SEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHH
T ss_pred             ceEEEEECC----EEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhcc
Confidence            34444 365    88999999999999999988        999999999999999999999999999999999987742


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhc
Q psy12573        105 DKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILR  184 (315)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  184 (315)
                      ..                        ..             ...      .    .          +     .+ ..+ +
T Consensus        76 ~~------------------------~~-------------~~~------~----~----------~-----~~-~~~-~   91 (256)
T 3trr_A           76 GE------------------------AV-------------LSE------R----G----------L-----GF-TNV-P   91 (256)
T ss_dssp             TC------------------------CC-------------EET------T----E----------E-----TT-SSS-C
T ss_pred             cc------------------------ch-------------hhh------h----h----------h-----hH-HHh-c
Confidence            00                        00             000      0    0          0     00 123 7


Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHH
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYN  263 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~  263 (315)
                      +|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|+.+ .+++++++|..++++++++|+.++++||++
T Consensus        92 ~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~  171 (256)
T 3trr_A           92 PRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAK  171 (256)
T ss_dssp             CSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHGG
T ss_pred             CCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHH
Confidence            8999999999999999999999999999999999999999999999885 578999999999999999999999999999


Q ss_pred             cCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        264 AGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +|+|+++++. +++.+.+.+++++|+..||.+++.+|+++++....+++++
T Consensus       172 ~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  221 (256)
T 3trr_A          172 YGFINRLVDD-GQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEA  221 (256)
T ss_dssp             GTCCSEEECT-TCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHH
T ss_pred             CCCeeEecCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            9999999999 9999999999999999999999999999999988888765

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=7.4e-43  Score=301.15  Aligned_cols=209  Identities=22%  Similarity=0.268  Sum_probs=183.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++.....  .       
T Consensus        17 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~-------   79 (265)
T 3qxz_A           17 VAVLTLHGPSTRNSFTVELG--------RQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFA--A-------   79 (265)
T ss_dssp             EEEEEEECGGGTSCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCC--C-------
T ss_pred             EEEEEEcCCccCCCCCHHHH--------HHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccc--h-------
Confidence            88999999999999999988        999999999999999999999999999999999987642100  0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                ....+              +..          ..++..+.++|||+||+|+|+|
T Consensus        80 --------------------------~~~~~--------------~~~----------~~~~~~l~~~~kPvIAav~G~a  109 (265)
T 3qxz_A           80 --------------------------PRNPD--------------FSA----------SPVQPAAFELRTPVIAAVNGHA  109 (265)
T ss_dssp             --------------------------CCSSC--------------CCS----------CCSSSCGGGSSSCEEEEECSEE
T ss_pred             --------------------------hHHHH--------------HHH----------HHHHHHHHhCCCCEEEEECCEE
Confidence                                      00000              000          1133456789999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       110 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~  188 (265)
T 3qxz_A          110 IGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPA-GK  188 (265)
T ss_dssp             ETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSEEECH-HH
T ss_pred             ehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeCH-HH
Confidence            999999999999999999999999999999999885 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILEN-SRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~-~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++. ||.+++.+|+++++....+++++
T Consensus       189 l~~~a~~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~  227 (265)
T 3qxz_A          189 VLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAA  227 (265)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999999999 99999999999998877666543

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=3.5e-41  Score=292.70  Aligned_cols=222  Identities=21%  Similarity=0.262  Sum_probs=187.6

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++++.......+       
T Consensus        14 v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~-------   78 (275)
T 1dci_A           14 VLHVQLNRPEKRNAMNRAFW--------RELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP-------   78 (275)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCC-------
T ss_pred             EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccc-------
Confidence            78899999999999999988        999999999999999999999999999999999987643100000       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                       ..+......       ....+...+..++..+.++||||||+|+|+|
T Consensus        79 ---------------------------------~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  118 (275)
T 1dci_A           79 ---------------------------------GDDVARIAW-------YLRDLISRYQKTFTVIEKCPKPVIAAIHGGC  118 (275)
T ss_dssp             ---------------------------------CSSHHHHHH-------HHHHHHHHHHHHHHHHHHSSSCEEEEECSEE
T ss_pred             ---------------------------------cchhhhhhH-------HHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence                                             000000000       0001223345567788899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCH-HHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPL-GVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~-~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      +|||++|+++||+++++++++|++||.++|++|+.+ ++++++++|. .++++++++|+.++++||+++|+|+++++..+
T Consensus       119 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~  198 (275)
T 1dci_A          119 IGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKD  198 (275)
T ss_dssp             ETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHH
T ss_pred             eHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChH
Confidence            999999999999999999999999999999999885 5789999999 99999999999999999999999999998646


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       199 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~  237 (275)
T 1dci_A          199 VMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDES  237 (275)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence            899999999999999999999999999998877777654

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=1.6e-41  Score=292.86  Aligned_cols=209  Identities=16%  Similarity=0.194  Sum_probs=182.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||||+ +|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++ +.....          
T Consensus        21 v~~itlnrp~-~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~----------   80 (264)
T 1wz8_A           21 VLEITFRGEK-LNAMPPALH--------RGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMR----------   80 (264)
T ss_dssp             EEEEEECCSG-GGCBCHHHH--------HHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHH----------
T ss_pred             EEEEEeCCCC-cCCCCHHHH--------HHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccc----------
Confidence            8889999999 999999888        99999999999999999999999999999999998 632000          


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                 +       +....           ..+...+..++..+.++|||+||+|+|+|
T Consensus        81 ---------------------------~-------~~~~~-----------~~~~~~~~~~~~~l~~~~kPvIAav~G~a  115 (264)
T 1wz8_A           81 ---------------------------A-------SHEAL-----------LRVFWEARDLVLGPLNFPRPVVAAVEKVA  115 (264)
T ss_dssp             ---------------------------H-------CHHHH-----------HHHHHHHHHHHHHHHHSSSCEEEEECSEE
T ss_pred             ---------------------------c-------chHHH-----------HHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence                                       0       00000           01122234566788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||+++|++|+.+ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       116 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  194 (264)
T 1wz8_A          116 VGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVED-EK  194 (264)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-GG
T ss_pred             echhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCceeecCh-hH
Confidence            999999999999999999999999999999999875 5789999999999999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +.+.+.+++++|+..+|.+++.+|+.+++.... +++
T Consensus       195 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~  230 (264)
T 1wz8_A          195 VYEKALEVAERLAQGPKEALHHTKHALNHWYRS-FLP  230 (264)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT-THH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHH
Confidence            999999999999999999999999999987655 554

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=2.3e-41  Score=291.53  Aligned_cols=212  Identities=17%  Similarity=0.239  Sum_probs=182.3

Q ss_pred             hhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++||| +|+++|++|..++        .+|.+++++++.|+. ++|||+|.|+.||+|+|++++.....  .      
T Consensus        15 v~~itln~rp~~~Nal~~~~~--------~~L~~al~~~~~d~~-r~vvltg~g~~F~aG~Dl~~~~~~~~--~------   77 (261)
T 2gtr_A           15 FTHILLSTKSSENNSLNPEVM--------REVQSALSTAAADDS-KLVLLSAVGSVFCCGLDFIYFIRRLT--D------   77 (261)
T ss_dssp             EEEEEECCSSSSTTEECHHHH--------HHHHHHHHHHHHSSC-SCEEEEESSSCSBCEECHHHHHHHHH--H------
T ss_pred             EEEEEECCCCccCCCCCHHHH--------HHHHHHHHHHhcCCC-EEEEEecCCCccccccCchhhhhccc--c------
Confidence            7889999 6999999999888        999999999999875 99999999999999999987642000  0      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                  +.        ..          ....+...+..++..+.++|||+||+|+|+
T Consensus        78 ----------------------------~~--------~~----------~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  111 (261)
T 2gtr_A           78 ----------------------------DR--------KR----------ESTKMAEAIRNFVNTFIQFKKPIIVAVNGP  111 (261)
T ss_dssp             ----------------------------CH--------HH----------HHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             ----------------------------ch--------hh----------HHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence                                        00        00          000112223456677889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|++++ +++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus       112 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~  190 (261)
T 2gtr_A          112 AIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWP-G  190 (261)
T ss_dssp             EETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECG-G
T ss_pred             EeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCcccccCh-h
Confidence            99999999999999999999999999999999998854 789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      ++.+.+.+++++|+..||.+++.+|+++++....++++
T Consensus       191 ~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~  228 (261)
T 2gtr_A          191 TFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQ  228 (261)
T ss_dssp             GHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCHHH
Confidence            99999999999999999999999999998866555544

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.2e-41  Score=296.65  Aligned_cols=221  Identities=17%  Similarity=0.262  Sum_probs=186.8

Q ss_pred             CceEEeC-CChhhHhhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         25 NCIIVGE-GANTMDIGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      +.+.+.. ++    ++++||| ||+++|+++..++        .+|.++|++++.|+. |+|||+|.|+.||+|+|++++
T Consensus        23 ~~v~~~~~~~----v~~itln~rp~~~Nal~~~m~--------~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~   89 (291)
T 2fbm_A           23 RDIVVKKEDG----FTQIVLSTRSTEKNALNTEVI--------KEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYF   89 (291)
T ss_dssp             SSEEEEECSS----EEEEEECCSSSSTTCBCHHHH--------HHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHH
T ss_pred             ceEEEEEeCC----EEEEEECCCCCCCCCCCHHHH--------HHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHH
Confidence            4454443 55    8899999 6999999999888        999999999998875 999999999999999999876


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      .....  .                                  +.        ..          ....+...+..++..+
T Consensus        90 ~~~~~--~----------------------------------~~--------~~----------~~~~~~~~~~~~~~~l  115 (291)
T 2fbm_A           90 VKHLR--N----------------------------------NR--------NT----------ASLEMVDTIKNFVNTF  115 (291)
T ss_dssp             HHHHH--H----------------------------------CH--------HH----------HHHHHHHHHHHHHHHH
T ss_pred             Hhccc--c----------------------------------cc--------hh----------HHHHHHHHHHHHHHHH
Confidence            42000  0                                  00        00          0001112234566778


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++||||||+|+|+|+|||++|+++||+++++++++|++||+++|++|++++ +++++++|..++++++++|+.++++||
T Consensus       116 ~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~el~ltg~~i~A~eA  195 (291)
T 2fbm_A          116 IQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREA  195 (291)
T ss_dssp             HHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHH
T ss_pred             HhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHHHHHHHHHcCCccCHHHH
Confidence            8999999999999999999999999999999999999999999999998854 789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +++|||+++++. +++.+.+.+++++|+..||.+++.+|+++++....++++
T Consensus       196 ~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~  246 (291)
T 2fbm_A          196 CAKGLVSQVFLT-GTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQ  246 (291)
T ss_dssp             HHTTSCSEEECS-TTSHHHHHHHHHHHTTSCHHHHHHHHHHHHTTTHHHHHH
T ss_pred             HHCCCcceecCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccCHHH
Confidence            999999999999 999999999999999999999999999999866555544

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=8.6e-42  Score=293.85  Aligned_cols=208  Identities=24%  Similarity=0.329  Sum_probs=182.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||||+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|++++...  . . ..    
T Consensus        17 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~--~-~-~~----   80 (260)
T 1mj3_A           17 VGLIQLNRPKALNALCNGLI--------EELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR--T-F-QD----   80 (260)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC--C-H-HH----
T ss_pred             EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcc--c-c-hH----
Confidence            77899999999999999988        9999999999999999999999999999999999876420  0 0 00    


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                   .+         ...          +.    ..+..+.++|||+||+|+|+|
T Consensus        81 -----------------------------~~---------~~~----------~~----~~~~~l~~~~kPvIAav~G~a  108 (260)
T 1mj3_A           81 -----------------------------CY---------SGK----------FL----SHWDHITRIKKPVIAAVNGYA  108 (260)
T ss_dssp             -----------------------------HH---------HC------------C----CGGGGGGGCSSCEEEEECSEE
T ss_pred             -----------------------------HH---------HHH----------HH----HHHHHHHhCCCCEEEEECCEE
Confidence                                         00         000          00    012345689999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       109 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  187 (260)
T 1mj3_A          109 LGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ET  187 (260)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TT
T ss_pred             EeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEEeCh-HH
Confidence            999999999999999999999999999999999885 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|+..+|.+++.+|+++++....+++++
T Consensus       188 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  225 (260)
T 1mj3_A          188 LVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEG  225 (260)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999999888777664

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=2.7e-41  Score=293.50  Aligned_cols=212  Identities=15%  Similarity=0.223  Sum_probs=181.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||||+++|+++..++        .+|.+++++++.|+++ +|||+|.|+.||+|+|++++....  ....     
T Consensus        36 va~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~--~~~~-----   99 (280)
T 2f6q_A           36 ITKIMFNRPKKKNAINTEMY--------HEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIP--PGGV-----   99 (280)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCC--TTHH-----
T ss_pred             EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcC--cchh-----
Confidence            88899999999999999888        9999999999999999 999999999999999998764200  0000     


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                           ....          ..+...+..++..+.++|||+||+|+|+|
T Consensus       100 -------------------------------------~~~~----------~~~~~~~~~~~~~l~~~~kPvIAav~G~a  132 (280)
T 2f6q_A          100 -------------------------------------EEKA----------KNNAVLLREFVGCFIDFPKPLIAVVNGPA  132 (280)
T ss_dssp             -------------------------------------HHHH----------HHHHHHHHHHHHHHHSCCSCEEEEECSCE
T ss_pred             -------------------------------------hHHH----------HHHHHHHHHHHHHHHcCCCCEEEEECCee
Confidence                                                 0000          01112234566788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       133 ~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~  211 (280)
T 2f6q_A          133 VGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPD-ST  211 (280)
T ss_dssp             ETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TT
T ss_pred             ehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceEECH-HH
Confidence            999999999999999999999999999999999885 4789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +.+.+.+++++|+..+|.+++.+|+.+++....++++
T Consensus       212 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~  248 (280)
T 2f6q_A          212 FQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHA  248 (280)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCHHH
Confidence            9999999999999999999999999998875545544

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=1.5e-41  Score=291.31  Aligned_cols=209  Identities=17%  Similarity=0.203  Sum_probs=183.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++..  .+ +.      
T Consensus        26 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~--~~-~~------   88 (257)
T 1szo_A           26 VLLVTVHTEGKSLVWTSTAH--------DELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL--GT-PH------   88 (257)
T ss_dssp             EEEEEECBTTBSCEECHHHH--------HHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC--SS-HH------
T ss_pred             EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhc--CC-HH------
Confidence            88999999999999998887        999999999999999999999999999999999986531  00 00      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                            ..           ..+...+..++..+.++|||+||+|+|+|
T Consensus        89 --------------------------------------~~-----------~~~~~~~~~~~~~l~~~~kPvIAav~G~a  119 (257)
T 1szo_A           89 --------------------------------------DW-----------DEIIFEGQRLLNNLLSIEVPVIAAVNGPV  119 (257)
T ss_dssp             --------------------------------------HH-----------HHHHHHHHHHHHHHHHCCSCEEEEECSCB
T ss_pred             --------------------------------------HH-----------HHHHHHHHHHHHHHHcCCCcEEEEECCch
Confidence                                                  00           01111234456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeC-CCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTASKFST-PGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~-pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      + ||++|+++||+++++++++|++ ||+++|++|+.++ +++++++|..++++++++|+.++++||+++|+|+++++. +
T Consensus       120 ~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~  197 (257)
T 1szo_A          120 T-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSE-Q  197 (257)
T ss_dssp             C-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-H
T ss_pred             H-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-H
Confidence            9 5999999999999999999999 9999999998854 689999999999999999999999999999999999998 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       198 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  236 (257)
T 1szo_A          198 ELLPRAWELARGIAEKPLLARRYARKVLTRQLRRVMEAD  236 (257)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhccHHHH
Confidence            999999999999999999999999999998776666554

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=7.6e-42  Score=294.53  Aligned_cols=216  Identities=20%  Similarity=0.227  Sum_probs=186.0

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc-CC-CccccchhhhH
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG-DS-AFGFSGMELET  101 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g-~g-~~~~aG~Dl~~  101 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+ +++|||+| .| +.||+|.|+++
T Consensus         4 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~   70 (261)
T 1ef8_A            4 QYVNVVTINK----VAVIEFNYGRKLNALSKVFI--------DDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHE   70 (261)
T ss_dssp             SSEEEEEETT----EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTT
T ss_pred             ceEEEEEeCC----EEEEEEcCCCccCCCCHHHH--------HHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHh
Confidence            3444443 54    88899999999999999888        99999999999999 99999999 99 89999999976


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573        102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS  181 (315)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (315)
                      +...                                      ...      +..               ....+..++..
T Consensus        71 ~~~~--------------------------------------~~~------~~~---------------~~~~~~~~~~~   91 (261)
T 1ef8_A           71 LPSG--------------------------------------GRD------PLS---------------YDDPLRQITRM   91 (261)
T ss_dssp             C-------------------------------------------C------TTC---------------TTSHHHHHHHH
T ss_pred             hhcc--------------------------------------Cch------hHH---------------HHHHHHHHHHH
Confidence            5310                                      000      000               00112346677


Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      +.++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|++++ +++++++|..++++++++|+.++++|
T Consensus        92 l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~e  171 (261)
T 1ef8_A           92 IQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQR  171 (261)
T ss_dssp             HHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHH
T ss_pred             HHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHH
Confidence            88999999999999999999999999999999999999999999999999854 78999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      |+++|+|+++++. +++.+.+.+++++|+..||.+++.+|+.+++....++++
T Consensus       172 A~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~  223 (261)
T 1ef8_A          172 ALAVGILNHVVEV-EELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMN  223 (261)
T ss_dssp             HHHTTSCSEEECH-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHCCCcccccCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHH
Confidence            9999999999998 999999999999999999999999999999877666554

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=3.2e-41  Score=290.25  Aligned_cols=208  Identities=16%  Similarity=0.208  Sum_probs=181.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC-CCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD-SAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~-g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++.+|||+|+ +|+++..++        .+|.+++++++.|+++++|||+|. |+.||+|+|++++...  +.+.     
T Consensus        15 v~~itlnrp~-~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~--~~~~-----   78 (260)
T 1sg4_A           15 VAVMKFKNPP-VNSLSLEFL--------TELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR--SPAH-----   78 (260)
T ss_dssp             EEEEEECCTT-TTEECHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSC--CHHH-----
T ss_pred             EEEEEECCCC-CCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhcc--CHHH-----
Confidence            8889999996 799999888        999999999999999999999999 7899999999876320  0000     


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                                         ...+...+..++..+.++|||+||+|+|+
T Consensus        79 ---------------------------------------------------~~~~~~~~~~~~~~l~~~~kPvIAav~G~  107 (260)
T 1sg4_A           79 ---------------------------------------------------YAGYWKAVQELWLRLYQSNLVLVSAINGA  107 (260)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHHHHTCSSEEEEEECEE
T ss_pred             ---------------------------------------------------HHHHHHHHHHHHHHHHcCCCCEEEEECCe
Confidence                                                               00112223456778899999999999999


Q ss_pred             cchhhhHHHhhcCeeeee--CCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        197 AAAAGCQLVATCDLAIAT--TASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~--~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      |+|||++|+++||+++++  ++++|++||+++|++|++++ +++++++|..++++++++|+.++++||+++|||+++++.
T Consensus       108 a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~~GLv~~vv~~  187 (260)
T 1sg4_A          108 CPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE  187 (260)
T ss_dssp             BCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred             eehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCCCEecCH
Confidence            999999999999999999  89999999999999999854 789999999999999999999999999999999999998


Q ss_pred             chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        274 NEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       274 ~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                       +++.+.+.+++++|+..||.+++.+|+.+++....++++
T Consensus       188 -~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~  226 (260)
T 1sg4_A          188 -EQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVT  226 (260)
T ss_dssp             -GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHH
Confidence             999999999999999999999999999998865544443

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.4e-41  Score=295.94  Aligned_cols=220  Identities=17%  Similarity=0.130  Sum_probs=187.3

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCcccc-chhhhHH
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFS-GMELETL  102 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~a-G~Dl~~~  102 (315)
                      +.+.+.. ++    ++++|||+|+ +|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+ |.|++++
T Consensus         8 ~~v~~~~~~~----Va~itlnrP~-~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~   74 (289)
T 3h0u_A            8 ETIKARLDGT----VLSATFNAPP-MNLIGPEVV--------RDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKV   74 (289)
T ss_dssp             SSEEEEEETT----EEEEEECCTT-TCCBCHHHH--------HHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCH
T ss_pred             CeEEEEEECC----EEEEEECCCC-CCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHH
Confidence            4454443 55    8899999998 899999888        999999999999999999999999977775 6799877


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ....   +.                                ... .     .    .          .+...+..++..+
T Consensus        75 ~~~~---~~--------------------------------~~~-~-----~----~----------~~~~~~~~~~~~l   99 (289)
T 3h0u_A           75 PEYT---AE--------------------------------AAK-A-----G----G----------PGDASLGMLFRKL   99 (289)
T ss_dssp             HHHH---HH--------------------------------HHT-T-----S----S----------TTCCSHHHHHHHH
T ss_pred             hhcC---cc--------------------------------hhh-h-----H----H----------HHHHHHHHHHHHH
Confidence            4310   00                                000 0     0    0          0011234567788


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      .++|||+||+|+|+|+|||++|+++||+++++++ ++|++||+++|++|+++ .+++++++|..++++++++|+.++++|
T Consensus       100 ~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~e  179 (289)
T 3h0u_A          100 SQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADL  179 (289)
T ss_dssp             HTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH
T ss_pred             HhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence            9999999999999999999999999999999998 99999999999999884 578999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      |+++|||+++++. +++.+.+.+++++|++.||.+++.+|+++++... +++++
T Consensus       180 A~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~~-~l~~~  231 (289)
T 3h0u_A          180 AERYGWVNRAVPD-AELDEFVAGIAARMSGFPRDALIAAKSAINAISL-PAPAE  231 (289)
T ss_dssp             HHHHTSSSEEECH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHS-CCHHH
T ss_pred             HHHCCCccEecCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-cHHHH
Confidence            9999999999999 9999999999999999999999999999999877 66654

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=4.8e-41  Score=290.45  Aligned_cols=212  Identities=23%  Similarity=0.270  Sum_probs=179.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++... .. +       
T Consensus        21 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-~~-~-------   83 (267)
T 3oc7_A           21 VARLTLNSPHNRNALSTALV--------SQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSG-GS-P-------   83 (267)
T ss_dssp             EEEEEECCGGGTSCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-------------------
T ss_pred             EEEEEecCCCccCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhc-cC-c-------
Confidence            88899999999999999988        9999999999999999999999999999999999876410 00 0       


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                        .+...          ....+...+..++..+.++|||+||+|+|+|
T Consensus        84 ----------------------------------~~~~~----------~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  119 (267)
T 3oc7_A           84 ----------------------------------SSAYD----------MAVERAREMAALMRAIVESRLPVIAAIDGHV  119 (267)
T ss_dssp             -----------------------------------CHHH----------HHHHHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred             ----------------------------------hhhhh----------hHHHHHHHHHHHHHHHHhCCCCEEEEEcCee
Confidence                                              00000          0002233455677788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||+++|++|++++ ++++ ++|..++++++++|+.++++||+++|+|+++  . ++
T Consensus       120 ~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~-~~  195 (267)
T 3oc7_A          120 RAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSARAAARYYLTGEKFDARRAEEIGLITMA--A-ED  195 (267)
T ss_dssp             ETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--C-SS
T ss_pred             cccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--h-HH
Confidence            9999999999999999999999999999999998855 6788 9999999999999999999999999999999  5 89


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       196 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  233 (267)
T 3oc7_A          196 LDAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRD  233 (267)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999999999999999998876666554

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=5e-42  Score=296.06  Aligned_cols=218  Identities=21%  Similarity=0.275  Sum_probs=184.6

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchhhhHH
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETL  102 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~Dl~~~  102 (315)
                      +.+.+.. ++    ++++|||||+++|++|..++        .+|.+++++++.|+++|+|||+|.|+ .||+|.|++++
T Consensus         9 ~~v~~~~~~~----v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~   76 (267)
T 3r9t_A            9 PGALAERRGN----VMVITINRPEARNAINAAVS--------IGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAI   76 (267)
T ss_dssp             CSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHH
T ss_pred             CcEEEEEECC----EEEEEEcCCcccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHH
Confidence            3444443 65    88999999999999999998        99999999999999999999999995 99999999887


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      .....  .                                  ..     ....    .  +       ...   .+  ..
T Consensus        77 ~~~~~--~----------------------------------~~-----~~~~----~--~-------~~~---~~--~~   97 (267)
T 3r9t_A           77 ARREN--L----------------------------------YH-----PDHP----E--W-------GFA---GY--VR   97 (267)
T ss_dssp             HTTCC--C----------------------------------SC-----TTCG----G--G-------CGG---GT--TT
T ss_pred             hcccc--h----------------------------------hh-----HHHH----h--H-------HHH---HH--HH
Confidence            53100  0                                  00     0000    0  0       000   01  12


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+.+ .+++++++|..++++++++|+.++++||
T Consensus        98 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l~ltg~~i~A~eA  177 (267)
T 3r9t_A           98 HFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAA  177 (267)
T ss_dssp             CCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHHHHHHHHHCCCEEHHHH
T ss_pred             HhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHH
Confidence            379999999999999999999999999999999999999999999999885 4789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHH---HHHhhCCChhhh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQF---LYQQMSLNIEEA  314 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~---l~~~~~~~l~~~  314 (315)
                      +++|||+++++. +++.+.+.+++++|+..||.+++.+|++   +++....+++++
T Consensus       178 ~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~  232 (267)
T 3r9t_A          178 RDWGLINEVVEA-GSVLDAALALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPG  232 (267)
T ss_dssp             HHHTSSSEEECT-TCHHHHHHHHHHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHH
T ss_pred             HHCCCccEEcCh-hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999999 9999999999999999999999999999   887766666654

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=8.5e-42  Score=290.82  Aligned_cols=204  Identities=20%  Similarity=0.209  Sum_probs=181.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++....           
T Consensus        13 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~-----------   73 (243)
T 2q35_A           13 VVQITMKDESSRNGFSPSIV--------EGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKT-----------   73 (243)
T ss_dssp             EEEEEECCGGGTSBSCHHHH--------HHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHH-----------
T ss_pred             EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhcc-----------
Confidence            78899999999999999888        99999999999999999999999999999999998763200           


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                .+.       .     .  .            ..++..+.++|||+||+|+|+|
T Consensus        74 --------------------------~~~-------~-----~--~------------~~~~~~l~~~~kPvIAav~G~a  101 (243)
T 2q35_A           74 --------------------------RGE-------V-----E--V------------LDLSGLILDCEIPIIAAMQGHS  101 (243)
T ss_dssp             --------------------------TTC-------C-----C--C------------CCCHHHHHTCCSCEEEEECSEE
T ss_pred             --------------------------chh-------h-----H--H------------HHHHHHHHhCCCCEEEEEcCcc
Confidence                                      000       0     0  0            0133467899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|++++ +++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       102 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~  180 (243)
T 2q35_A          102 FGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSR-QD  180 (243)
T ss_dssp             ETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEECH-HH
T ss_pred             ccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEecCh-hH
Confidence            9999999999999999999999999999999998854 789999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      +.+.+.++++++++.+|.+++.+|+.+++....++++
T Consensus       181 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~  217 (243)
T 2q35_A          181 VLNYAQQLGQKIAKSPRLSLVALKQHLSADIKAKFPE  217 (243)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHH
Confidence            9999999999999999999999999999876555544

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=1.6e-41  Score=291.69  Aligned_cols=210  Identities=17%  Similarity=0.225  Sum_probs=184.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++.+|||+|++.|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++++...  ..+.      
T Consensus        34 Va~ItLnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~--~~~~------   97 (263)
T 2j5g_A           34 ILEVRMHTNGSSLVFTGKTH--------REFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDV--TNPR------   97 (263)
T ss_dssp             EEEEEECBTTBSCEECHHHH--------HHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCT--TSHH------
T ss_pred             EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhcc--CCHH------
Confidence            88899999999999998887        9999999999999999999999999999999999876320  0000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                            .           ...+...+..++..+.++|||+||+|+|+|
T Consensus        98 --------------------------------------~-----------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  128 (263)
T 2j5g_A           98 --------------------------------------E-----------WDKTYWEGKKVLQNLLDIEVPVISAVNGAA  128 (263)
T ss_dssp             --------------------------------------H-----------HHHHHHHHHHHHHHHHTCCSCEEEEECSEE
T ss_pred             --------------------------------------H-----------HHHHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence                                                  0           001112234566778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeC-CCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTASKFST-PGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~-pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      + ||++|+++||+++++++++|++ ||+++|++|++++ +++++++|..++++++++|+.++++||+++|||+++++. +
T Consensus       129 ~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~  206 (263)
T 2j5g_A          129 L-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ-S  206 (263)
T ss_dssp             C-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEECG-G
T ss_pred             h-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEecCh-H
Confidence            9 5999999999999999999999 9999999998854 789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.||.+++.+|+++++....+++++
T Consensus       207 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  245 (263)
T 2j5g_A          207 KLMERAWEIARTLAKQPTLNLRYTRVALTQRLKRLVNEG  245 (263)
T ss_dssp             GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhccHHHH
Confidence            999999999999999999999999999998877666654

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=2.9e-41  Score=298.44  Aligned_cols=215  Identities=19%  Similarity=0.162  Sum_probs=180.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-------ccccchhhhHHhhhccCch
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-------FGFSGMELETLAVDKEGRP  110 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-------~~~aG~Dl~~~~~~~~~~~  110 (315)
                      |+++|||||+++|+++..++        .+|.++|++++.|+++|+|||||.|+       .||+|+|++++........
T Consensus        67 Va~ItlnrP~~~NAl~~~~~--------~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~  138 (334)
T 3t8b_A           67 TVRVAFNRPEVRNAFRPHTV--------DELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYA  138 (334)
T ss_dssp             EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-------
T ss_pred             EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhccccccc
Confidence            89999999999999999988        99999999999999999999999997       7999999986532000000


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEE
Q psy12573        111 KLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPIL  190 (315)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI  190 (315)
                      .                 ...             ...    .+.             .......+..+++.+.++|||||
T Consensus       139 ~-----------------~~~-------------~~~----~~~-------------~~~~~~~~~~~~~~i~~~~kPvI  171 (334)
T 3t8b_A          139 S-----------------GDT-------------ADT----VDV-------------ARAGRLHILEVQRLIRFMPKVVI  171 (334)
T ss_dssp             --------------------------------------------------------------CCHHHHHHHHHHSSSEEE
T ss_pred             c-----------------ccc-------------chh----hhH-------------HHHHHHHHHHHHHHHHhCCCCEE
Confidence            0                 000             000    000             00001112346667889999999


Q ss_pred             EEEccccchhhhHHHhhcCeeeee-CCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccc
Q psy12573        191 AIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLIT  268 (315)
Q Consensus       191 a~v~G~~~g~G~~l~l~~d~~~a~-~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~  268 (315)
                      |+|+|+|+|||++|+++||+++|+ ++++|++||+++|++|++ ++++|++++|..++++++++|+.++++||+++|||+
T Consensus       172 AaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~  251 (334)
T 3t8b_A          172 CLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVN  251 (334)
T ss_dssp             EEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCS
T ss_pred             EEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCc
Confidence            999999999999999999999999 999999999999999887 468899999999999999999999999999999999


Q ss_pred             cccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        269 RVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       269 ~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      ++++. +++.+.+.+++++|+..+|.+++.+|++++....
T Consensus       252 ~vv~~-~~l~~~a~~~A~~ia~~~p~a~~~~K~~l~~~~~  290 (334)
T 3t8b_A          252 AVAEH-AELETVGLQWAAEINAKSPQAQRMLKFAFNLLDD  290 (334)
T ss_dssp             EEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCC
T ss_pred             EecCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Confidence            99999 9999999999999999999999999999998754

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=2.3e-41  Score=291.64  Aligned_cols=214  Identities=19%  Similarity=0.251  Sum_probs=180.6

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||||+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|.|++++.
T Consensus        15 ~~v~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~   82 (265)
T 3qxi_A           15 PEVLVEQRDR----ILIITINRPKAKNSVNAAVS--------RALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFA   82 (265)
T ss_dssp             CCEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-----
T ss_pred             CeEEEEEECC----EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhh
Confidence            4454443 65    88999999999999999988        99999999999999999999999999999999998764


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ...                        ..             ...  ..++               .        +..+.
T Consensus        83 ~~~------------------------~~-------------~~~--~~~~---------------~--------~~~~~  100 (265)
T 3qxi_A           83 RGE------------------------NV-------------VVE--GRGL---------------G--------FTERP  100 (265)
T ss_dssp             --C------------------------CC-------------EET--TTEE---------------T--------TTTSC
T ss_pred             ccc------------------------hh-------------hhh--hhhh---------------h--------HHHhh
Confidence            200                        00             000  0000               0        01122


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      . |||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .+++++++|..++++++++|+.++++||+
T Consensus       101 ~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~  179 (265)
T 3qxi_A          101 P-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAH  179 (265)
T ss_dssp             C-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHHHHHHHCCCEEHHHHH
T ss_pred             C-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHH
Confidence            3 999999999999999999999999999999999999999999999885 57899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|||+++++. +++.+.+.+++++|++.+|.+++.+|+++++....+++++
T Consensus       180 ~~GLv~~vv~~-~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~  230 (265)
T 3qxi_A          180 ALGMVNVLAEP-GAALDAAIALAEKITANGPLAVAATKRIITESRGWSLDTR  230 (265)
T ss_dssp             HTTSCSEEECT-TCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCTTTH
T ss_pred             HCCCccEeeCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            99999999999 9999999999999999999999999999999888777664

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=1.1e-41  Score=296.37  Aligned_cols=215  Identities=19%  Similarity=0.201  Sum_probs=182.8

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHH
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETL  102 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~  102 (315)
                      +.+.+.. ++    ++++|||||+ +|+++..++        .+|.+++.+++.|+++|+|||+|.| +.||+|+|++++
T Consensus         9 ~~i~~~~~~~----va~itlnrP~-~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~   75 (287)
T 3gkb_A            9 STLRVSSEHG----VARIILDNPP-VNVIGATMM--------RELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG   75 (287)
T ss_dssp             SSEEEEEETT----EEEEEECCTT-TTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGG
T ss_pred             CeEEEEEECC----EEEEEECCCC-CCCCCHHHH--------HHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHH
Confidence            4454443 55    8899999998 899999988        9999999999999999999999998 689999999887


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ...    ....       .                          ...  +..              .....+..++..+
T Consensus        76 ~~~----~~~~-------~--------------------------~~~--~~~--------------~~~~~~~~~~~~l  102 (287)
T 3gkb_A           76 EKM----DALQ-------E--------------------------LAA--SAP--------------ADVNVFQAVGELI  102 (287)
T ss_dssp             GSH----HHHH-------H--------------------------HHH--TSC--------------TTCCTTHHHHHHH
T ss_pred             hhc----cccc-------h--------------------------hhH--HHH--------------HHHHHHHHHHHHH
Confidence            430    0000       0                          000  000              0001123466788


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeC-CceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATT-ASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~-~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      .++|||+||+|+|+|+|||++|+++||++++++ +++|++||+++|++|+++ +++|++++|..++++++++|+.++++|
T Consensus       103 ~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ellltG~~i~A~e  182 (287)
T 3gkb_A          103 RHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAET  182 (287)
T ss_dssp             HHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHH
T ss_pred             HhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHH
Confidence            899999999999999999999999999999999 999999999999999884 578999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                      |+++|||+++++. +++.+.+.+++++|++.||.+++.+|+++++.
T Consensus       183 A~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~  227 (287)
T 3gkb_A          183 AASYGWINRALPA-DELDEYVDRVARNIAALPDGVIEAAKRSLPAD  227 (287)
T ss_dssp             HHHHTSSSEEECH-HHHHHHHHHHHHHHHTSCTTHHHHHHHHSCCC
T ss_pred             HHHCCCCcEEeCh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Confidence            9999999999999 99999999999999999999999999998863

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=8e-41  Score=297.03  Aligned_cols=236  Identities=17%  Similarity=0.155  Sum_probs=184.0

Q ss_pred             ceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhh
Q psy12573         26 CIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        26 ~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      .|.+.. ++    |+++|||||+++|+++..++        .+|.++|+.++.|+++|+|||+|.|+.||+|.|++++..
T Consensus        36 ~i~~e~~~~----Va~ItLnrP~~~NAl~~~m~--------~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~  103 (333)
T 3njd_A           36 TMTYEVTDR----VARITFNRPEKGNAIVADTP--------LELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAE  103 (333)
T ss_dssp             SEEEEEETT----EEEEEECCGGGTTCBCTHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC------
T ss_pred             eEEEEEECC----EEEEEeCCCCccCCCCHHHH--------HHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhh
Confidence            455443 55    89999999999999999998        999999999999999999999999999999999988753


Q ss_pred             hccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhh--hh--hhcCCCCcchh-hHHHHHHHHH
Q psy12573        105 DKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI--AT--TASKFSTPGYN-ILVSTCSDLM  179 (315)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~--~~--~~~~~~~~~~~-~~~~~~~~~~  179 (315)
                      ........                  ..          ..|..    .|-..  ..  ....+ .+... .+...+...+
T Consensus       104 ~~~~~~~~------------------~~----------~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  150 (333)
T 3njd_A          104 GSSSAGGG------------------SP----------YEGTV----LSGKTQALNHLPDEPW-DPMVDYQMMSRFVRGF  150 (333)
T ss_dssp             ---------------------------C----------CTTST----TCHHHHHHTTCSSSCC-CHHHHHHHHHHHHHHH
T ss_pred             cccccccc------------------cc----------ccccc----cccccccccccccccc-chhhHHHHHHHHHHHH
Confidence            10000000                  00          00000    00000  00  00000 00011 3344556677


Q ss_pred             HHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        180 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       180 ~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      ..+.++||||||+|+|+|+|||++|+++||+++++++++|++||+++|++|..+  .+++++|..++++++++|+.++++
T Consensus       151 ~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g--~l~~~vG~~~A~ellltG~~i~A~  228 (333)
T 3njd_A          151 ASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG--LWAHRLGDQRAKRLLFTGDCITGA  228 (333)
T ss_dssp             THHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTC--CHHHHHCHHHHHHHHTTCCEEEHH
T ss_pred             HHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHH--HHHHHHHHHHHHHHHhcCCCCCHH
Confidence            788999999999999999999999999999999999999999999999998865  578999999999999999999999


Q ss_pred             HHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCC
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSL  309 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~  309 (315)
                      ||+++|||+++++. +++.+.+.+++++|++.||.+++.+|+++++....
T Consensus       229 eA~~~GLV~~vv~~-~~l~~~a~~lA~~ia~~~~~al~~~K~~l~~~~~~  277 (333)
T 3njd_A          229 QAAEWGLAVEAPDP-ADLDARTERLVERIAAMPVNQLIMAKLACNTALLN  277 (333)
T ss_dssp             HHHHTTSSSBCCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCccEecCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999 99999999999999999999999999999987653

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=2.5e-41  Score=292.73  Aligned_cols=214  Identities=24%  Similarity=0.240  Sum_probs=181.0

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEc-----CCC-ccccch
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQG-----DSA-FGFSGM   97 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g-----~g~-~~~aG~   97 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|     .|+ .||+|+
T Consensus        10 ~~v~~~~~~~----va~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~   77 (275)
T 4eml_A           10 DDILYYKAGG----IAKIVINRPHKRNAFRPQTV--------FELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG   77 (275)
T ss_dssp             SSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCB
T ss_pred             ceEEEEEECC----EEEEEecCCCccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCc
Confidence            3454443 55    88999999999999999988        99999999999999999999999     885 899999


Q ss_pred             hhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHH
Q psy12573         98 ELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSD  177 (315)
Q Consensus        98 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~  177 (315)
                      |++++....  ..                                          +....  .   .        .....
T Consensus        78 Dl~~~~~~~--~~------------------------------------------~~~~~--~---~--------~~~~~  100 (275)
T 4eml_A           78 DQSVRGEGG--YI------------------------------------------DDQGT--P---R--------LNVLD  100 (275)
T ss_dssp             CCC---------------------------------------------------------------C--------CCHHH
T ss_pred             Chhhhhccc--cc------------------------------------------chhhH--H---H--------HHHHH
Confidence            998763200  00                                          00000  0   0        01234


Q ss_pred             HHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCC
Q psy12573        178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPI  256 (315)
Q Consensus       178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~  256 (315)
                      ++..+.++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|.. +.+++++++|..++++++++|+.+
T Consensus       101 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~~A~~llltg~~i  180 (275)
T 4eml_A          101 LQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQY  180 (275)
T ss_dssp             HHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCE
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHHHHHHHHHhCCCc
Confidence            5667889999999999999999999999999999999999999999999988665 568899999999999999999999


Q ss_pred             CHHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        257 SAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       257 ~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      +++||+++|||+++++. +++.+.+.+++++|++.||.+++.+|+++++...
T Consensus       181 ~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~  231 (275)
T 4eml_A          181 SAQEAERMGMVNTVVPV-DRLEEEGIQWAKEILSKSPLAIRCLKAAFNADCD  231 (275)
T ss_dssp             EHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Confidence            99999999999999999 9999999999999999999999999999998653

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=7.5e-41  Score=291.03  Aligned_cols=225  Identities=15%  Similarity=0.116  Sum_probs=185.5

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||||+++|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|+|++++.
T Consensus         9 ~~i~~~~~~~----v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~   76 (280)
T 1pjh_A            9 EKISYRIEGP----FFIIHLINPDNLNALEGEDY--------IYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIA   76 (280)
T ss_dssp             TTEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHH
T ss_pred             CceEEEEECC----EEEEEECCCcccCCCCHHHH--------HHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHh
Confidence            4455443 55    88999999999999999988        99999999999999999999999999999999998764


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccC-hhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCD-LAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ......+                                 ..     ..+ .....          ..+......++..+
T Consensus        77 ~~~~~~~---------------------------------~~-----~~~~~~~~~----------~~~~~~~~~~~~~l  108 (280)
T 1pjh_A           77 KAQGDDT---------------------------------NK-----YPSETSKWV----------SNFVARNVYVTDAF  108 (280)
T ss_dssp             C----------------------------------------C-----CSSHHHHHH----------HHTHHHHHHHHHHH
T ss_pred             hcccccc---------------------------------cc-----hhhhHHHHH----------HHHHHHHHHHHHHH
Confidence            2000000                                 00     000 00000          01222234566788


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeee-CCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~-~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      .++||||||+|+|+|+|||++|+++||+++++ ++++|++||+++|++|+++ ++++++++|..++++++++|+.++++|
T Consensus       109 ~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~e  188 (280)
T 1pjh_A          109 IKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI  188 (280)
T ss_dssp             HHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHH
T ss_pred             HhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHH
Confidence            99999999999999999999999999999999 9999999999999999885 478999999999999999999999999


Q ss_pred             HHHcCccccccCCch-----HHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHhhCCC
Q psy12573        261 AYNAGLITRVVSSNE-----ELESET-KVLTSAILENSRSVLTLGKQFLYQQMSLN  310 (315)
Q Consensus       261 a~~~Glv~~v~~~~~-----~~~~~~-~~~~~~l~~~~~~a~~~~k~~l~~~~~~~  310 (315)
                      |+++|||+++++. +     ++.+.+ .+++++|++.||.+++.+|+++++.....
T Consensus       189 A~~~GLv~~vv~~-~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K~~l~~~~~~~  243 (280)
T 1pjh_A          189 MCENGFISKNFNM-PSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDA  243 (280)
T ss_dssp             HHHTTCCSEECCC-CTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHH
T ss_pred             HHHCCCcceeeCC-ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhHHHH
Confidence            9999999999998 5     788888 49999999999999999999998765433

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=3.5e-41  Score=292.63  Aligned_cols=222  Identities=19%  Similarity=0.192  Sum_probs=182.7

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.+.+.. ++    ++++|||+|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++++.
T Consensus        20 ~~v~~~~~~~----v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~   87 (279)
T 3t3w_A           20 MYIDYDVSDR----IATITLNRPEAANAQNPELL--------DELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGG   87 (279)
T ss_dssp             CSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC---
T ss_pred             CeEEEEEECC----EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhh
Confidence            4455543 55    88999999999999999988        99999999999999999999999999999999998764


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      .....                                   .        +...          ........+..++..+.
T Consensus        88 ~~~~~-----------------------------------~--------~~~~----------~~~~~~~~~~~~~~~l~  114 (279)
T 3t3w_A           88 PVPDK-----------------------------------L--------TLEF----------IYAHESRRYLEYSLRWR  114 (279)
T ss_dssp             ----------------------------------------C--------CHHH----------HHHHHHHHTHHHHHHHH
T ss_pred             hcccc-----------------------------------c--------chHH----------HHHHHHHHHHHHHHHHH
Confidence            31000                                   0        0000          00011122334667889


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYN  263 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~  263 (315)
                      ++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|+++. ++..+++++|..++++++++|+.++++||++
T Consensus       115 ~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~~-~~~~~~~~vG~~~A~~llltG~~i~A~eA~~  193 (279)
T 3t3w_A          115 NVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGGV-EYHGHTWELGPRKAKEILFTGRAMTAEEVAQ  193 (279)
T ss_dssp             HCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSC-SSCCHHHHHCHHHHHHHHHHCCCEEHHHHHH
T ss_pred             hCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCCc-hHHHHHhhcCHHHHHHHHHcCCccCHHHHHH
Confidence            999999999999999999999999999999999999999999999543 3333489999999999999999999999999


Q ss_pred             cCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCC-Chhh
Q psy12573        264 AGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSL-NIEE  313 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~-~l~~  313 (315)
                      +|+|+++++. +++.+.+.+++++|++.||.+++.+|+++++..+. .+++
T Consensus       194 ~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  243 (279)
T 3t3w_A          194 TGMVNRVVPR-DRLDAETRALAGEIAKMPPFALRQAKRAVNQTLDVQGFYA  243 (279)
T ss_dssp             HTSCSEEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             CCCCcEeeCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcccHHH
Confidence            9999999999 99999999999999999999999999999987653 4444

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=4.3e-41  Score=291.31  Aligned_cols=202  Identities=24%  Similarity=0.272  Sum_probs=175.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|+++..++        .+|.+++++++.|+++++|||+|.|+ .||+|+|++++..     .      
T Consensus        23 va~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~-----~------   83 (273)
T 2uzf_A           23 IAKVTINRPEVRNAFTPKTV--------AEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGH-----G------   83 (273)
T ss_dssp             EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC----------------
T ss_pred             EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhc-----c------
Confidence            88999999999999999988        99999999999999999999999998 9999999976531     0      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                  +.  .   +.    +.  +..  . .    +..++..+.++|||+||+|+|+
T Consensus        84 ----------------------------~~--~---~~----~~--~~~--~-~----~~~~~~~l~~~~kPvIAav~G~  117 (273)
T 2uzf_A           84 ----------------------------GY--V---GE----DQ--IPR--L-N----VLDLQRLIRIIPKPVIAMVKGY  117 (273)
T ss_dssp             ------------------------------------CC----SS--SCC--C-T----HHHHHHHHHHSSSCEEEEECEE
T ss_pred             ----------------------------cc--c---hh----hh--HHH--h-h----HHHHHHHHHhCCCCEEEEECCE
Confidence                                        00  0   00    00  000  0 0    1235567788999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||+++|++|+++ ++++++++|..++++++++|+.++++||+++|||+++++. +
T Consensus       118 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~  196 (273)
T 2uzf_A          118 AVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPL-E  196 (273)
T ss_dssp             EETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHHHHHHHTCCCEEHHHHHHHTSSSEEECG-G
T ss_pred             EeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCccccCH-H
Confidence            9999999999999999999999999999999999885 5789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQ  305 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~  305 (315)
                      ++.+.+.+++++|++.+|.+++.+|+.++.
T Consensus       197 ~l~~~a~~~a~~la~~~~~a~~~~K~~l~~  226 (273)
T 2uzf_A          197 KVEDETVQWCKEIMKHSPTALRFLKAAMNA  226 (273)
T ss_dssp             GSHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            999999999999999999999999999983

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=1.2e-40  Score=290.11  Aligned_cols=206  Identities=23%  Similarity=0.241  Sum_probs=176.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||+|+++|++|..++        .+|.+++++++.|+++|+|||+|.|+ .||+|+|++++....  ..      
T Consensus        38 va~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~--~~------  101 (289)
T 3t89_A           38 IAKITINRPQVRNAFRPLTV--------KEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYG--GY------  101 (289)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------
T ss_pred             EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccc--cc------
Confidence            88999999999999999988        99999999999999999999999995 999999998763200  00      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                         .+..   .          ........++..+.++||||||+|+|+
T Consensus       102 -----------------------------------~~~~---~----------~~~~~~~~~~~~l~~~~kPvIAaV~G~  133 (289)
T 3t89_A          102 -----------------------------------KDDS---G----------VHHLNVLDFQRQIRTCPKPVVAMVAGY  133 (289)
T ss_dssp             --------------------------------------------------------CTHHHHHHHHHHCSSCEEEEECSE
T ss_pred             -----------------------------------hhhh---H----------HHHHHHHHHHHHHHcCCCCEEEEECCE
Confidence                                               0000   0          000012346667889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|.. +++++++++|..++++++++|+.++++||+++|||+++++. +
T Consensus       134 a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~  212 (289)
T 3t89_A          134 SIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPL-A  212 (289)
T ss_dssp             EETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-G
T ss_pred             eehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHHHHHHHHHcCCcccHHHHHHCCCceEeeCH-H
Confidence            999999999999999999999999999999976554 66889999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      ++.+.+.+++++|+..+|.+++.+|+++++...
T Consensus       213 ~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~  245 (289)
T 3t89_A          213 DLEKETVRWCREMLQNSPMALRCLKAALNADCD  245 (289)
T ss_dssp             GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999998654

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=4.4e-40  Score=295.38  Aligned_cols=224  Identities=19%  Similarity=0.219  Sum_probs=187.2

Q ss_pred             CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-Cccccchhhh
Q psy12573         23 PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELE  100 (315)
Q Consensus        23 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~  100 (315)
                      +++.+.+.. ++    ++++|||||+++|+++..++        .+|.++|.+++.|+++|+|||+|.| +.||+|+|++
T Consensus         4 ~~~~v~~~~~~~----v~~itLnrP~~~Nal~~~m~--------~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~   71 (363)
T 3bpt_A            4 AAEEVLLGKKGC----TGVITLNRPKFLNALTLNMI--------RQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIR   71 (363)
T ss_dssp             CCCSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHH
T ss_pred             CCcceEEEEECC----EEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHH
Confidence            344555543 65    88999999999999999988        9999999999999999999999998 8999999998


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML  180 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (315)
                      ++.....                                    .+.     ...              ..+......++.
T Consensus        72 ~~~~~~~------------------------------------~~~-----~~~--------------~~~~~~~~~~~~   96 (363)
T 3bpt_A           72 VISEAEK------------------------------------AKQ-----KIA--------------PVFFREEYMLNN   96 (363)
T ss_dssp             HHHHHHT------------------------------------SSC-----CCH--------------HHHHHHHHHHHH
T ss_pred             HHHhhcc------------------------------------ccc-----HHH--------------HHHHHHHHHHHH
Confidence            7642000                                    000     000              011122234566


Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|++++ +++++++|. ++++++++|+.++++
T Consensus        97 ~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a~~l~ltg~~i~A~  175 (363)
T 3bpt_A           97 AVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGFRLKGR  175 (363)
T ss_dssp             HHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HHHHHHHHCCCEETH
T ss_pred             HHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-HHHHHHHcCCCCCHH
Confidence            789999999999999999999999999999999999999999999999998854 789999997 999999999999999


Q ss_pred             HHHHcCccccccCCchHHHHHH---------------------------------------------------H------
Q psy12573        260 DAYNAGLITRVVSSNEELESET---------------------------------------------------K------  282 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~---------------------------------------------------~------  282 (315)
                      ||+++|||+++++. +++.+.+                                                   .      
T Consensus       176 eA~~~GLv~~vv~~-~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~~~~~ei~~al  254 (363)
T 3bpt_A          176 DVYRAGIATHFVDS-EKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENL  254 (363)
T ss_dssp             HHHHTTSCSEECCG-GGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTSSSHHHHHHHH
T ss_pred             HHHHCCCcceecCH-HHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999998 8875431                                                   2      


Q ss_pred             ---------HHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        283 ---------VLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       283 ---------~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                               +++++|++.||.+++.+|+++++....+++++|
T Consensus       255 ~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l  296 (363)
T 3bpt_A          255 QQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVL  296 (363)
T ss_dssp             HHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             hccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHH
Confidence                     578899999999999999999999888887763

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=5.5e-40  Score=281.45  Aligned_cols=197  Identities=16%  Similarity=0.159  Sum_probs=175.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      ++++|||+|+++|+++..++        .+|.++++++++ +++|+|||+|.|+.||+|.|++++...  ....      
T Consensus        17 v~~itlnrp~~~Nal~~~~~--------~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~--~~~~------   79 (254)
T 3isa_A           17 AWTFTLSRPEKRNALSAELV--------EALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQ--SEGD------   79 (254)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTS--CHHH------
T ss_pred             EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhcc--Cchh------
Confidence            88999999999999999988        999999999987 589999999999999999999876420  0000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                                        .......+..++..+.++|||+||+|+|+|
T Consensus        80 --------------------------------------------------~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  109 (254)
T 3isa_A           80 --------------------------------------------------LLLRMVRIEMLLQRVAGSPSLTLALAHGRN  109 (254)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHHHTCSSEEEEEECSEE
T ss_pred             --------------------------------------------------HHHHHHHHHHHHHHHHhCCCCEEEEECCeE
Confidence                                                              000111234567788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|++|  +++++++++|..++++++++|+.++++||+++|+|+++++. +++
T Consensus       110 ~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p--g~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l  186 (254)
T 3isa_A          110 FGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL--GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQ-AQW  186 (254)
T ss_dssp             ETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC--SHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEECCG-GGH
T ss_pred             eecchhHHHhCCEEEEcCCCEEECchhccCccH--HHHHHHHHcCHHHHHHHHHhCCCCcHHHHHHCCCccEEeCh-hHH
Confidence            999999999999999999999999999999998  46889999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLY  304 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~  304 (315)
                      .+.+.++++++++.||.+++.+|+.++
T Consensus       187 ~~~a~~~a~~la~~~~~a~~~~K~~l~  213 (254)
T 3isa_A          187 PALIDAAAEAATALDPATRATLHRVLR  213 (254)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            999999999999999999999999984

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=1.8e-39  Score=284.92  Aligned_cols=213  Identities=15%  Similarity=0.103  Sum_probs=178.3

Q ss_pred             hhhhhhccCCC----cccccCCCCccccchHHHHHHHHHHhhhc-----CCCCeEEEEEcCCCccccchhhhHHhhhccC
Q psy12573         38 IGRSLLLNNLP----RHRLDAGTFGTMGVGLGFALAAALYCNHY-----APGKRVVCVQGDSAFGFSGMELETLAVDKEG  108 (315)
Q Consensus        38 ~~~~~l~~~~~----~n~~~~~~~~~mg~~~~~~l~~~l~~~~~-----d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~  108 (315)
                      ++++|||+|++    +|+++..++        .+|.++|++++.     |+++|+|||+|.|+.||+|+|++++..... 
T Consensus        42 V~~itLnrp~k~n~~rpal~~~m~--------~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~-  112 (305)
T 3m6n_A           42 VYWIHMHADLAINPGRACFSTRLV--------DDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIR-  112 (305)
T ss_dssp             EEEEEECTTC-----CCSBCHHHH--------HHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHH-
T ss_pred             EEEEEECCccccCCCCCCCCHHHH--------HHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccc-
Confidence            88999999988    557777666        999999999987     589999999999999999999998753100 


Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHH---HHhcC
Q psy12573        109 RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLML---SILRH  185 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~  185 (315)
                       .                                         .+....           ..+...+...+.   .+.++
T Consensus       113 -~-----------------------------------------~~~~~~-----------~~~~~~~~~~~~~l~~~~~~  139 (305)
T 3m6n_A          113 -E-----------------------------------------GDRARL-----------LDYAQRCVRGVHAFHVGLGA  139 (305)
T ss_dssp             -H-----------------------------------------TCHHHH-----------HHHHHHHHHHHHHHHTGGGT
T ss_pred             -c-----------------------------------------ccHHHH-----------HHHHHHHHHHHHHHHHhcCC
Confidence             0                                         000000           001111112222   23568


Q ss_pred             CCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHc
Q psy12573        186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNA  264 (315)
Q Consensus       186 ~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~  264 (315)
                      ||||||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ .++|++++|..++++++++|+.++++||+++
T Consensus       140 ~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~  219 (305)
T 3m6n_A          140 RAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGM  219 (305)
T ss_dssp             TCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHH
T ss_pred             CCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHC
Confidence            999999999999999999999999999999999999999999999885 5789999999999999999999999999999


Q ss_pred             CccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        265 GLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      |||+++++. +++.+.+.+++++|++ +|.+++.+|+.++.....+++++
T Consensus       220 GLv~~vv~~-~~l~~~a~~~a~~la~-~p~a~~~~K~~l~~~~~~~l~~~  267 (305)
T 3m6n_A          220 GLVDRVVPR-GQGVAAVEQVIRESKR-TPHAWAAMQQVREMTTAVPLEEM  267 (305)
T ss_dssp             TSCSEEECT-TCHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             CCCCEecCh-hHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhhcCCHHHH
Confidence            999999999 9999999999999986 89999999999999988888765

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.8e-40  Score=281.23  Aligned_cols=202  Identities=20%  Similarity=0.258  Sum_probs=172.1

Q ss_pred             CCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      ...+.+.. ++    ++++|||||+++|++|..++        .+|.+++++++.| ++|+|||+|.|+.||+|+|++..
T Consensus        20 ~~~i~~~~~~~----v~~itlnrP~~~Nal~~~~~--------~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~   86 (264)
T 3he2_A           20 GSMIGITQAEA----VLTIELQRPERRNALNSQLV--------EELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGD   86 (264)
T ss_dssp             --CEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTC
T ss_pred             CCeEEEEEECC----EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccc
Confidence            34455443 65    88999999999999999988        9999999999988 99999999999999999998611


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ..                                        ..                       .+...+..++..+
T Consensus        87 ~~----------------------------------------~~-----------------------~~~~~~~~~~~~l  103 (264)
T 3he2_A           87 AF----------------------------------------AA-----------------------DYPDRLIELHKAM  103 (264)
T ss_dssp             TT----------------------------------------GG-----------------------GHHHHHHHHHHHH
T ss_pred             hh----------------------------------------hH-----------------------HHHHHHHHHHHHH
Confidence            00                                        00                       0111234566778


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      .++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+.+ .++|++++|..++++++++|+.++++||
T Consensus       104 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~llltG~~i~A~eA  183 (264)
T 3he2_A          104 DASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIA  183 (264)
T ss_dssp             HHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHH
T ss_pred             HhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHHHHHcCCCccHHHH
Confidence            899999999999999999999999999999999999999999999999874 4789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                      +++|||+++++.     +.+.+++++|++.||.+++.+|+++++.
T Consensus       184 ~~~GLV~~v~~~-----~~a~~~A~~la~~~p~a~~~~K~~l~~~  223 (264)
T 3he2_A          184 LHTGMANRIGTL-----ADAQAWAAEIARLAPLAIQHAKRVLNDD  223 (264)
T ss_dssp             HHHTSCSEECCH-----HHHHHHHHHHHTSCHHHHHHHHHHHHTS
T ss_pred             HHCCCeEEEecH-----HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Confidence            999999999852     5688999999999999999999999986

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=8.5e-40  Score=296.47  Aligned_cols=217  Identities=16%  Similarity=0.152  Sum_probs=184.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|||||+++|+++..++        .+|.++|.+++.|+++|+|||+|.| +.||+|+|++++.....  .      
T Consensus        52 V~~ItLnrP~~~NAl~~~m~--------~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~--~------  115 (407)
T 3ju1_A           52 VGVVTLNVEKALNALDLDMV--------RAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASV--A------  115 (407)
T ss_dssp             EEEEEECCGGGTSCBCHHHH--------HHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHH--H------
T ss_pred             EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccc--c------
Confidence            88999999999999999998        9999999999999999999999999 69999999988753100  0      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                  +.    ..+..           ....++.....++..+.++|||+||+|+|+
T Consensus       116 ----------------------------~~----~~~~~-----------~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~  152 (407)
T 3ju1_A          116 ----------------------------AK----GQVTE-----------VAKVFFEEEYRLDYLLHTYGKPVLVWGDGI  152 (407)
T ss_dssp             ----------------------------HT----SSCCH-----------HHHHHHHHHHHHHHHHHTCSSCEEEECCSE
T ss_pred             ----------------------------cc----cccHH-----------HHHHHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence                                        00    00000           001233344567778899999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||+++|++|+++ ++++++++| .++++++++|++++++||+++|||+++++. +
T Consensus       153 a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~-~  230 (407)
T 3ju1_A          153 VMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHMNAADACYVGLADHYLNR-D  230 (407)
T ss_dssp             EETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST-THHHHHHHHCCCBCHHHHHHHTSCSEECCG-G
T ss_pred             cccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH-HHHHHHHHcCCcCcHHHHHHCCCccEEcCH-H
Confidence            9999999999999999999999999999999999885 478999999 999999999999999999999999999998 8


Q ss_pred             HHHH---H----------------HHHH----------------------------------------------------
Q psy12573        276 ELES---E----------------TKVL----------------------------------------------------  284 (315)
Q Consensus       276 ~~~~---~----------------~~~~----------------------------------------------------  284 (315)
                      ++.+   .                +.++                                                    
T Consensus       231 ~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~~f~~sv~~i~~~L~~~~~~~~~a~~~  310 (407)
T 3ju1_A          231 DKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDRLMAGSLTDIVTRMSTLSTDEAWLSKA  310 (407)
T ss_dssp             GHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHHHTCSCHHHHHHHHHHCCCSCHHHHHH
T ss_pred             HHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHhcCCHHHHHHHHHhcccccHHHHHH
Confidence            8766   3                3221                                                    


Q ss_pred             HHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        285 TSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       285 ~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      +++|++.||.+++.+|+++++....+++++|
T Consensus       311 a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l  341 (407)
T 3ju1_A          311 CATMLAGSPISWHLAYIQTQLGTKLSLAQCF  341 (407)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhcCCHHHHH
Confidence            4789999999999999999999999998764

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=1.6e-37  Score=281.22  Aligned_cols=205  Identities=20%  Similarity=0.241  Sum_probs=171.9

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC--------C-CccccchhhhHHhhhccC
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD--------S-AFGFSGMELETLAVDKEG  108 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~--------g-~~~~aG~Dl~~~~~~~~~  108 (315)
                      |+++|||+|+++|++|..++        .+|.++|++++.|+++|+|||+|.        | +.||+|.||+++......
T Consensus       177 Va~ItLNRP~k~NALs~~m~--------~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~  248 (440)
T 2np9_A          177 VARLTMCRDDRLNAEDGQQV--------DDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGIS  248 (440)
T ss_dssp             EEEEEECCTTTTTCBCHHHH--------HHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCC
T ss_pred             EEEEEECCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcc
Confidence            88999999999999999998        999999999999999999999995        6 789999999887431100


Q ss_pred             chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH-------
Q psy12573        109 RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS-------  181 (315)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  181 (315)
                      ..                                          +.. ...           ....+..++..       
T Consensus       249 ~~------------------------------------------~~~-~~~-----------~~~~~~~~~~~l~~~~~~  274 (440)
T 2np9_A          249 LV------------------------------------------DFL-MRR-----------ELGYIHKLVRGVLTNDDR  274 (440)
T ss_dssp             TT------------------------------------------TTH-HHH-----------HHTHHHHHHHCEECCSCS
T ss_pred             hh------------------------------------------hhh-hHH-----------HHHHHHHHHHHHHhhccc
Confidence            00                                          000 000           00001111111       


Q ss_pred             -----HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCC
Q psy12573        182 -----ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPI  256 (315)
Q Consensus       182 -----l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~  256 (315)
                           +..+||||||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++++++++++|..++++++++|+.+
T Consensus       275 ~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g~~~L~rlvG~~~A~ellLtG~~i  354 (440)
T 2np9_A          275 PGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVSRQVILEGRRI  354 (440)
T ss_dssp             TTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCE
T ss_pred             chhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchHHHHHHHHhhHHHHHHHHHcCCCC
Confidence                 247899999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             CHHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        257 SAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       257 ~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      +++||+++|||++|++. +++.+.+.+++++++   +.++..+|++++....
T Consensus       355 ~A~EA~~~GLV~~Vvp~-~eL~~~a~~~A~~la---~~Av~~~K~~l~~~~~  402 (440)
T 2np9_A          355 WAKEPEARLLVDEVVEP-DELDAAIERSLTRLD---GDAVLANRRMLNLADE  402 (440)
T ss_dssp             ETTSGGGGGTCSEEECH-HHHHHHHHHHHHTTC---SHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHCCCCcEecCh-HHHHHHHHHHHHHhC---HHHHHHHHHHHHhhhc
Confidence            99999999999999998 999999999988764   5899999999988755

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=2.7e-36  Score=291.30  Aligned_cols=203  Identities=19%  Similarity=0.236  Sum_probs=178.1

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |+.+|||||+ .|+++..++        .+|.+++++++.|+++|+|||||.|+.||+|+||+++....           
T Consensus        31 Va~itlnrP~-~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~-----------   90 (742)
T 3zwc_A           31 LAMIRLCNPP-VNAVSPTVI--------REVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFT-----------   90 (742)
T ss_dssp             EEEEEECCTT-TTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSC-----------
T ss_pred             EEEEEeCCCc-ccCCCHHHH--------HHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccC-----------
Confidence            8999999996 799999888        99999999999999999999999999999999997653200           


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                .+                           ..++.+++.+.++||||||+|+|+|
T Consensus        91 --------------------------~~---------------------------~~~~~~~~~i~~~~kPvIAai~G~a  117 (742)
T 3zwc_A           91 --------------------------PG---------------------------LALGSLVDEIQRYQKPVLAAIQGVA  117 (742)
T ss_dssp             --------------------------SC---------------------------SHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred             --------------------------hh---------------------------HHHHHHHHHHHhCCCCEEEEECccc
Confidence                                      00                           0123456678899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+|+++++++|++||+++|++|+++ +++|++++|..+|++++++|+.++++||+++|+|++|++. +.
T Consensus       118 ~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~-d~  196 (742)
T 3zwc_A          118 LGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKS-DP  196 (742)
T ss_dssp             ETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESS-CH
T ss_pred             hHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCCchhHHHHHHcCCccEecCc-hh
Confidence            999999999999999999999999999999999885 5789999999999999999999999999999999999987 65


Q ss_pred             HHHHHHHHHHHHHhCCH----------------------------------HHHHHHHHHHHHhhCCChhhhC
Q psy12573        277 LESETKVLTSAILENSR----------------------------------SVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~----------------------------------~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                       .+.+.+++++++..++                                  .+...+++.++.+...+++++|
T Consensus       197 -~~~A~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~~~~v~~~~~~~~~~gl  268 (742)
T 3zwc_A          197 -VEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGI  268 (742)
T ss_dssp             -HHHHHHHHHHHTTSCSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             -hHHHHHHHHHHhcCCchhhhhhcccccccchhhhhHHHHHHHHhhhccchhHHHHHHHHHHHHhhCCHHHHH
Confidence             5678899999988765                                  4777888889888888887764

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=8e-37  Score=278.94  Aligned_cols=201  Identities=16%  Similarity=0.161  Sum_probs=173.0

Q ss_pred             hhhhhhccCC----------CcccccCCCCccccchHHHHHHHHHHhhhcC-CCCeEEEEEc-CCCccccchhhhHHhhh
Q psy12573         38 IGRSLLLNNL----------PRHRLDAGTFGTMGVGLGFALAAALYCNHYA-PGKRVVCVQG-DSAFGFSGMELETLAVD  105 (315)
Q Consensus        38 ~~~~~l~~~~----------~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d-~~~~vvvl~g-~g~~~~aG~Dl~~~~~~  105 (315)
                      ++.+|||+|+          ++|+++..++        .+|.+++++++.| +++|+|||+| .|+.||+|+|++.+...
T Consensus        31 VA~ITLNRPed~~l~~g~~~k~NALs~~ml--------~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~  102 (556)
T 2w3p_A           31 VATLGIDIAEDGGIRDGYKLKLNSYDLGVD--------IELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLS  102 (556)
T ss_dssp             EEEEEECCCTTCCSSSSCCCCTTEECHHHH--------HHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHS
T ss_pred             EEEEEEecccccccccccCCCCCCCCHHHH--------HHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhc
Confidence            8899999998          7899888877        9999999999999 9999999999 99999999999876431


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH---
Q psy12573        106 KEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI---  182 (315)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---  182 (315)
                        ..+..                                 .                       .+...++.++..+   
T Consensus       103 --~~~~~---------------------------------~-----------------------~~~~~~~~l~~~L~~a  124 (556)
T 2w3p_A          103 --THAWK---------------------------------V-----------------------NFCKFTNETRNGLEDS  124 (556)
T ss_dssp             --CHHHH---------------------------------H-----------------------HHHHHHHHHHHHHHHH
T ss_pred             --ccHHH---------------------------------H-----------------------HHHHHHHHHHHHHHHH
Confidence              00000                                 0                       0111223445556   


Q ss_pred             -hcCCCcEEEEEccccchhhhHHHhhcCeeeeeCC--ceeeCCCcc-CCCCCCchH-HHHh--hhcCHHHHHHHHhcCCC
Q psy12573        183 -LRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGAR-HGIFCSTPA-VALT--RKVPLGVVRSMTITGIP  255 (315)
Q Consensus       183 -~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~--a~~~~pe~~-~Gl~~~~~~-~~l~--~~~g~~~a~~~~~~g~~  255 (315)
                       .++|||+||+|+|+|+|||++|+++||+++++++  ++|++||++ +|++|++++ ++++  +++|..++++++++|+.
T Consensus       125 ~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~  204 (556)
T 2w3p_A          125 SRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEG  204 (556)
T ss_dssp             HHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSC
T ss_pred             HhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCC
Confidence             8999999999999999999999999999999999  999999999 999998855 7899  99999999999999999


Q ss_pred             CCHHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy12573        256 ISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQ  306 (315)
Q Consensus       256 ~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~  306 (315)
                      ++++||+++|||+++++. +++.+.+.+++++|+..+|.++.. |+.++..
T Consensus       205 isA~EAl~lGLVdeVVp~-~eL~~~A~~lA~~LA~~~p~Av~~-K~l~~~~  253 (556)
T 2w3p_A          205 VRGERAKAWRLVDEVVKP-NQFDQAIQARALELAAQSDRPAHA-QGVPLTR  253 (556)
T ss_dssp             EEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHHTTCCCCTTC-CCCCCCC
T ss_pred             CCHHHHHHCCCceEEeCh-hHHHHHHHHHHHHHHcCChHHHhh-hhhhcch
Confidence            999999999999999998 999999999999999999998874 6654443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=5.2e-35  Score=283.63  Aligned_cols=200  Identities=17%  Similarity=0.167  Sum_probs=170.0

Q ss_pred             CCCceEEe-C-CChhhHhhhhhhccCC-CcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchh
Q psy12573         23 PDNCIIVG-E-GANTMDIGRSLLLNNL-PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGME   98 (315)
Q Consensus        23 ~~~~~~~~-~-g~~~~~~~~~~l~~~~-~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~D   98 (315)
                      ++..+.+. . ++    ++.+|||+|+ ++|+++..++        .+|.+++++++.|+++|+|||+| |+ .||+|+|
T Consensus         4 ~~~~i~~~~~~~~----va~itlnrp~~~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~D   70 (715)
T 1wdk_A            4 EGKAITVTALESG----IVELKFDLKGESVNKFNRLTL--------NELRQAVDAIKADASVKGVIVSS-GKDVFIVGAD   70 (715)
T ss_dssp             ECSSEEEEECGGG----EEEEEECCTTSSSCBCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCC
T ss_pred             CCCeEEEEEeeCC----EEEEEEcCCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcC
Confidence            34455554 3 43    8899999999 9999999888        99999999999999999999999 77 8999999


Q ss_pred             hhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHH
Q psy12573         99 LETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDL  178 (315)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~  178 (315)
                      ++++......                                            +...           ...+...++.+
T Consensus        71 l~~~~~~~~~--------------------------------------------~~~~-----------~~~~~~~~~~~   95 (715)
T 1wdk_A           71 ITEFVENFKL--------------------------------------------PDAE-----------LIAGNLEANKI   95 (715)
T ss_dssp             HHHHHHHTTS--------------------------------------------CHHH-----------HHHHHHHHHHH
T ss_pred             HHHHhhcccC--------------------------------------------CHHH-----------HHHHHHHHHHH
Confidence            9876420000                                            0000           00112234566


Q ss_pred             HHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCC
Q psy12573        179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPIS  257 (315)
Q Consensus       179 ~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~  257 (315)
                      +..+.++||||||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ ++++++++|..++++++++|+.++
T Consensus        96 ~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~~A~~l~ltG~~~~  175 (715)
T 1wdk_A           96 FSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENR  175 (715)
T ss_dssp             HHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred             HHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCC
Confidence            7788999999999999999999999999999999999999999999999999885 578999999999999999999999


Q ss_pred             HHHHHHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        258 AQDAYNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       258 a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                      ++||+++|||+++++. +++.+.+.+++++++..
T Consensus       176 a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~  208 (715)
T 1wdk_A          176 AEDALKVSAVDAVVTA-DKLGAAALDLIKRAISG  208 (715)
T ss_dssp             HHHHHHTTSSSEEECG-GGHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCceEEeCh-HHHHHHHHHHHHHHhhc
Confidence            9999999999999998 99999999999999876

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-35  Score=286.96  Aligned_cols=223  Identities=16%  Similarity=0.204  Sum_probs=177.8

Q ss_pred             CCCCceEEe-C-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchh
Q psy12573         22 IPDNCIIVG-E-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGME   98 (315)
Q Consensus        22 ~~~~~~~~~-~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~D   98 (315)
                      ++.+.+.+. . ++    ++.+|||+| ++|+++..++        .+|.+++++++.|+++|+|||+| |+ .||+|+|
T Consensus         4 ~~~~~i~~~~~~~~----va~itlnrp-~~Nal~~~~~--------~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~D   69 (725)
T 2wtb_A            4 RTKGKTVMEVGGDG----VAVITLINP-PVNSLSFDVL--------YNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFD   69 (725)
T ss_dssp             ---CEEEEEECTTS----EEEEEEECT-TTTCCCHHHH--------HHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSC
T ss_pred             CcCCeEEEEEeeCC----EEEEEECCC-CCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcC
Confidence            345556555 4 54    889999999 8999999888        99999999999999999999999 76 8999999


Q ss_pred             hhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHH
Q psy12573         99 LETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDL  178 (315)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~  178 (315)
                      ++++...    ..                                .+..     +..              .+...++.+
T Consensus        70 l~~~~~~----~~--------------------------------~~~~-----~~~--------------~~~~~~~~~   94 (725)
T 2wtb_A           70 ISGFGEM----QK--------------------------------GNVK-----EPK--------------AGYISIDII   94 (725)
T ss_dssp             C-----------------------------------------------------CCS--------------SSHHHHHCC
T ss_pred             HHHHhcc----cc--------------------------------hhhh-----hHH--------------HHHHHHHHH
Confidence            9876320    00                                0000     000              000112233


Q ss_pred             HHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCC
Q psy12573        179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPIS  257 (315)
Q Consensus       179 ~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~  257 (315)
                      +..+.++|||+||+|+|+|+|||++|+++||+++++++++|++||+++|++|+++ +++|++++|..++++++++|+.++
T Consensus        95 ~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~A~~l~ltG~~~~  174 (725)
T 2wtb_A           95 TDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVK  174 (725)
T ss_dssp             CCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEE
T ss_pred             HHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHHHHHHHHcCCCCC
Confidence            4456789999999999999999999999999999999999999999999999885 578999999999999999999999


Q ss_pred             HHHHHHcCccccccCCchHHHHHHHHHHHHHHhC--CHH-HH---------------------------------HHHHH
Q psy12573        258 AQDAYNAGLITRVVSSNEELESETKVLTSAILEN--SRS-VL---------------------------------TLGKQ  301 (315)
Q Consensus       258 a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~--~~~-a~---------------------------------~~~k~  301 (315)
                      ++||+++|||+++++. +++.+.+.+++++++..  |+. ++                                 ..+|+
T Consensus       175 a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~g~pA~~~~k~  253 (725)
T 2wtb_A          175 AEEGHSLGLIDAVVPP-AELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNMKHPLMCLD  253 (725)
T ss_dssp             HHHHHHHTSCSEECCT-TTHHHHHHHHHHHHHTTSSCCCCGGGCCTTSCCHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             HHHHHHCCccceEcCh-hHHHHHHHHHHHHHHhcCCChhhhhhhccccCccchHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            9999999999999998 99999999999999876  332 22                                 47899


Q ss_pred             HHHHhhCCChhhh
Q psy12573        302 FLYQQMSLNIEEA  314 (315)
Q Consensus       302 ~l~~~~~~~l~~~  314 (315)
                      ++++....+++++
T Consensus       254 ~~~~~~~~~~~~~  266 (725)
T 2wtb_A          254 AIEVGIVSGPRAG  266 (725)
T ss_dssp             HHHHHHHSCHHHH
T ss_pred             HHHHhccCCHHHH
Confidence            9988877777665

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.69  E-value=6.9e-18  Score=160.41  Aligned_cols=166  Identities=14%  Similarity=0.135  Sum_probs=129.7

Q ss_pred             HhhhhhhccCCCccc--ccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHH
Q psy12573         37 DIGRSLLLNNLPRHR--LDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDE  114 (315)
Q Consensus        37 ~~~~~~l~~~~~~n~--~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~  114 (315)
                      .++.+++++|...|.  ++..+.        .+|.++|.+++.|+++++|||+++++    |+|+....           
T Consensus       302 ~VavI~l~g~i~~n~~~~~~~~~--------~~l~~~L~~a~~d~~vkaVVL~i~sp----GG~~~~~~-----------  358 (593)
T 3bf0_A          302 SIGVVFANGAIMDGEETQGNVGG--------DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTASE-----------  358 (593)
T ss_dssp             EEEEEEEEEEEESSSSCTTSEEH--------HHHHHHHHHHHHCTTEEEEEEEEEEE----EECHHHHH-----------
T ss_pred             CEEEEEEeeeecCCccccchhHH--------HHHHHHHHHHHhCCCCCEEEEEecCC----CCCHHHHH-----------
Confidence            378888999988887  344444        89999999999999999999999753    55432110           


Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                                                                                 .+...+..+..++||||++|+
T Consensus       359 -----------------------------------------------------------~i~~~i~~l~~~~kPVia~v~  379 (593)
T 3bf0_A          359 -----------------------------------------------------------VIRAELAAARAAGKPVVVSMG  379 (593)
T ss_dssp             -----------------------------------------------------------HHHHHHHHHHHTTCCEEEEEE
T ss_pred             -----------------------------------------------------------HHHHHHHHHHhCCCCEEEEEC
Confidence                                                                       012234456778999999999


Q ss_pred             cccchhhhHHHhhcCeeeeeCCceeeCCCc------------cCCCCCCc--------------hH--------------
Q psy12573        195 GVAAAAGCQLVATCDLAIATTASKFSTPGA------------RHGIFCST--------------PA--------------  234 (315)
Q Consensus       195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~------------~~Gl~~~~--------------~~--------------  234 (315)
                      |.|.+||++|+++||+++|++.+.|+.+++            ++|+.|+.              ..              
T Consensus       380 g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~~~l~~~  459 (593)
T 3bf0_A          380 GMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENG  459 (593)
T ss_dssp             EEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999885            57876421              00              


Q ss_pred             -HHHhhhcCHHH-----HHHHHhcCCCCCHHHHHHcCccccccCCchHHHHHHHHHH
Q psy12573        235 -VALTRKVPLGV-----VRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLT  285 (315)
Q Consensus       235 -~~l~~~~g~~~-----a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~  285 (315)
                       ..+.+.++..+     +.+++++|+.++++||+++|||+++++. +++.+.+.+++
T Consensus       460 ~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~-~~~~~~a~~~a  515 (593)
T 3bf0_A          460 YKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF-DDAVAKAAELA  515 (593)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCH-HHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCH-HHHHHHHHHHc
Confidence             23556666666     8889999999999999999999999987 88887776654

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.61  E-value=4.7e-15  Score=125.43  Aligned_cols=144  Identities=14%  Similarity=0.116  Sum_probs=107.5

Q ss_pred             HHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEeccc
Q psy12573         66 FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAG  145 (315)
Q Consensus        66 ~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G  145 (315)
                      .+|.++|++++.|+++|+|+|+++    |.|+|+....                                          
T Consensus        32 ~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------------------------------------   65 (240)
T 3rst_A           32 RTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------------------------------------   65 (240)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------------------------------------
Confidence            889999999999999999999987    3466543210                                          


Q ss_pred             chhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhc-CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCC--
Q psy12573        146 CQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILR-HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTP--  222 (315)
Q Consensus       146 ~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~p--  222 (315)
                                                  .+...+..+.. ++|||||+++|.|.++|++|+++||++++++.+.|+.+  
T Consensus        66 ----------------------------~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv  117 (240)
T 3rst_A           66 ----------------------------EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGV  117 (240)
T ss_dssp             ----------------------------HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCC
T ss_pred             ----------------------------HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccce
Confidence                                        01123344555 89999999999999999999999999999999999999  


Q ss_pred             -------------------CccCCCCCCchHH---------------------------HHhhhcCHHHHHHHHhcCCCC
Q psy12573        223 -------------------GARHGIFCSTPAV---------------------------ALTRKVPLGVVRSMTITGIPI  256 (315)
Q Consensus       223 -------------------e~~~Gl~~~~~~~---------------------------~l~~~~g~~~a~~~~~~g~~~  256 (315)
                                         +.+.|..+..+..                           ...|.+......+ +.+|+.+
T Consensus       118 ~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~  196 (240)
T 3rst_A          118 IMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVY  196 (240)
T ss_dssp             EEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEE
T ss_pred             eeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcc
Confidence                               4455544332100                           1123344444444 6789999


Q ss_pred             CHHHHHHcCccccccCCchHHHHHHHHHH
Q psy12573        257 SAQDAYNAGLITRVVSSNEELESETKVLT  285 (315)
Q Consensus       257 ~a~~a~~~Glv~~v~~~~~~~~~~~~~~~  285 (315)
                      ++++|++.||||++... +++.+.+.+++
T Consensus       197 ~a~~A~~~GLVD~i~~~-~~~~~~~~~~~  224 (240)
T 3rst_A          197 DGRQAKKLNLVDELGFY-DDTITAMKKDH  224 (240)
T ss_dssp             EHHHHHHTTSSSEECCH-HHHHHHHHHHC
T ss_pred             cHHHHHHcCCCcccCCH-HHHHHHHHHHh
Confidence            99999999999999987 77777766554

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.57  E-value=3e-14  Score=118.65  Aligned_cols=103  Identities=15%  Similarity=0.264  Sum_probs=83.6

Q ss_pred             HHHHHHhcCCCcEEEEE---ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH----------------HHH
Q psy12573        177 DLMLSILRHPVPILAII---SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA----------------VAL  237 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v---~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~----------------~~l  237 (315)
                      ..+..+..+++|||+.|   +|.|.++|+.|+++||++++.+.++|+.++...+. |..+.                ..+
T Consensus        58 ~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~l  136 (230)
T 3viv_A           58 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSL  136 (230)
T ss_dssp             HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence            35556778999999999   99999999999999999999999999998887421 11111                136


Q ss_pred             hhhcCH--HHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHHH
Q psy12573        238 TRKVPL--GVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESE  280 (315)
Q Consensus       238 ~~~~g~--~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~~  280 (315)
                      ++..|.  ..+++++.++..++++||+++|++|+++++.+++.++
T Consensus       137 a~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~  181 (230)
T 3viv_A          137 AQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKK  181 (230)
T ss_dssp             HHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHH
Confidence            667775  7899999999999999999999999999863444443

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=99.35  E-value=1.4e-13  Score=117.63  Aligned_cols=150  Identities=21%  Similarity=0.262  Sum_probs=115.9

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ++..+..+.++++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |+.+..+..+...+.    +     |+.
T Consensus        80 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~----v-----G~~  150 (254)
T 3hrx_A           80 YNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRL----V-----GLA  150 (254)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHH----H-----CHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHH----h-----Ccc
Confidence            456677889999999999999999999999999999999999999999999 999887765533221    2     888


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAYN  263 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~  263 (315)
                      .+  .+|+++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++..+...+.+++++
T Consensus       151 ~A--~~llltg~~i~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~  221 (254)
T 3hrx_A          151 KA--QELLLLSPRLSAEEA-------LALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKLLLETYRLSLTEALA  221 (254)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred             hH--HHHhhcCcccCHHHH-------HHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH
Confidence            77  999999999999999       7788875441        11222222   1   236678888777777777643


Q ss_pred             --cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 --AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 --~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                        .-+...++.+ +|..|...+|.+|
T Consensus       222 ~e~~~~~~~~~s-~d~~Eg~~AF~eK  246 (254)
T 3hrx_A          222 LEAVLQGQAGQT-QDHEEGVRAFREK  246 (254)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHhCC
Confidence              3456677788 8888998888775

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.32  E-value=7e-12  Score=108.84  Aligned_cols=92  Identities=11%  Similarity=0.129  Sum_probs=76.8

Q ss_pred             hcCCCcEEEEEccccchhh-hHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        183 LRHPVPILAIISGVAAAAG-CQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G-~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      ...++|+|+.|+|++.||| ..++++||++++.+.++|++.          +...+.+.+|..      ++++..+++++
T Consensus       188 ~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~----------Gp~~i~~~ig~~------l~~~~~~Ae~~  251 (304)
T 2f9y_B          188 QERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA----------GPRVIEQTVREK------LPPGFQRSEFL  251 (304)
T ss_dssp             HHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS----------CHHHHHHHHTSC------CCTTTTBHHHH
T ss_pred             hcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee----------cHHHHHHHhCcc------CCcccCCHHHH
Confidence            4569999999999999999 667999999999999888775          234455555542      35777899999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                      .++|+++.+++. +++.+.+.+++..+...
T Consensus       252 ~~~Glvd~Vv~~-~el~~~l~~ll~~l~~~  280 (304)
T 2f9y_B          252 IEKGAIDMIVRR-PEMRLKLASILAKLMNL  280 (304)
T ss_dssp             GGGTCCSEECCH-HHHHHHHHHHHHHHTTC
T ss_pred             HhcCCccEEeCc-HHHHHHHHHHHHHhhcC
Confidence            999999999999 89999999999999764

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=99.29  E-value=7.4e-13  Score=114.14  Aligned_cols=150  Identities=21%  Similarity=0.268  Sum_probs=115.6

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ++.++..+.++++|+|++|||.++|+|..++..||++++++.++|+.|+.+ ++.++.+..+...+.         .|..
T Consensus       100 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~---------vG~~  170 (274)
T 4fzw_C          100 YNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRV---------AGRA  170 (274)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHH---------TCHH
T ss_pred             HHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHH---------hhHH
Confidence            456777889999999999999999999999999999999999999999999 999988766543322         2777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+|+++++.+.+.++       .++|++..+.        ...+++.+.      ....|+++..+...+.++++ 
T Consensus       171 ~A--~~llltg~~i~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~  241 (274)
T 4fzw_C          171 RA--MGLALLGNQLSAEQA-------HEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLD  241 (274)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HH--HHHHHhCCcCCHHHH-------HHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCHHHHHH
Confidence            77  999999999999999       7888875441        112333322      23667888777777766654 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +......++.+ +|..|...+|.+|
T Consensus       242 ~e~~~~~~~~~s-~d~~Egv~AF~eK  266 (274)
T 4fzw_C          242 LERDYQRLAGRS-ADYREGVSAFLAK  266 (274)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHhCC
Confidence             33455566778 8888888888775

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.27  E-value=4.6e-11  Score=104.64  Aligned_cols=155  Identities=19%  Similarity=0.227  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      ......+....+...|+|..++.    .|...  |    .-.+.        .+........+..+..+++|+|+.|+|.
T Consensus       147 ~Ka~r~~~~A~~~~~PlI~lvdt----~Ga~~--g----~~ae~--------~g~~~~~a~~l~al~~~~vPvIavV~G~  208 (327)
T 2f9i_A          147 RKALRLMKQAEKFNRPIFTFIDT----KGAYP--G----KAAEE--------RGQSESIATNLIEMASLKVPVIAIVIGE  208 (327)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEE----SCSCC--C----HHHHH--------TTHHHHHHHHHHHHHTCSSCEEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCCEEEEEeC----CCCCc--c----hhhhh--------hhhHHHHHHHHHHHHhCCCCEEEEEECC
Confidence            33445555566778899988875    33322  1    11111        1333444556677889999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhc-CHHHHHHHHhcCCCCCHHHHHHcCccccccCCc-
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKV-PLGVVRSMTITGIPISAQDAYNAGLITRVVSSN-  274 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~-g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~-  274 (315)
                      +.|||+.+++.||++++.+.++|++      +.|.+++..+.+.. +...+.++    +.+++++++++|+|+++++.+ 
T Consensus       209 a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~ep~  278 (327)
T 2f9i_A          209 GGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVISEPL  278 (327)
T ss_dssp             EBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEECCCT
T ss_pred             cChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEecCCC
Confidence            9999999999999999999977764      22444444444333 33566665    679999999999999999852 


Q ss_pred             -------h----HHHHHHHHHHHHHHhCCHHHHHHH
Q psy12573        275 -------E----ELESETKVLTSAILENSRSVLTLG  299 (315)
Q Consensus       275 -------~----~~~~~~~~~~~~l~~~~~~a~~~~  299 (315)
                             +    ++.+...+..+.+.+.++..+...
T Consensus       279 gga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~l~~~  314 (327)
T 2f9i_A          279 GGAHKDIEQQALAIKSAFVAQLDSLESLSRDEIAND  314 (327)
T ss_dssp             TCGGGCHHHHHHHHHHHHHHHHHTTTTCCHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                   1    556666666666666666655443

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.25  E-value=5.9e-11  Score=104.28  Aligned_cols=153  Identities=16%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ...+.+....+...|+|..++.    .|...  +    .-.+.        .+........+..+..+++|+|+.|+|.+
T Consensus       162 Ka~r~~~~A~~~~lPlI~lvDt----~Ga~~--g----~~aE~--------~g~~~~~a~~l~al~~~~vPvIavV~G~a  223 (339)
T 2f9y_A          162 KALRLMQMAERFKMPIITFIDT----PGAYP--G----VGAEE--------RGQSEAIARNLREMSRLGVPVVCTVIGEG  223 (339)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEE----SCSCC--S----HHHHH--------TTHHHHHHHHHHHHHTCSSCEEEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCEEEEEeC----CCCcc--c----hHHHH--------HHHHHHHHHHHHHHHhCCCCEEEEEeCCc
Confidence            3445555566778899988875    33322  1    11111        13334445566778899999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCc--
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSN--  274 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~--  274 (315)
                      .|||+.+++.||++++.+.++|++      +.|++++ ..+.+..+...+.++    ..+++++++++|+|++|++.+  
T Consensus       224 ~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~ep~g  293 (339)
T 2f9y_A          224 GSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIPEPLG  293 (339)
T ss_dssp             EHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCCCSTT
T ss_pred             CcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEecCCCC
Confidence            999999999999999999988875      3355444 344445555677776    579999999999999999852  


Q ss_pred             ------h----HHHHHHHHHHHHHHhCCHHHHHH
Q psy12573        275 ------E----ELESETKVLTSAILENSRSVLTL  298 (315)
Q Consensus       275 ------~----~~~~~~~~~~~~l~~~~~~a~~~  298 (315)
                            +    ++.+...+..+.+.+.++..+..
T Consensus       294 ga~~~~~~~~~~lr~~l~~~L~~l~~~~~~~l~~  327 (339)
T 2f9y_A          294 GAHRNPEAMAASLKAQLLADLADLDVLSTEDLKN  327 (339)
T ss_dssp             CGGGCHHHHHHHHHHHHHHHTTTTTTSCHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                  1    45555555556666666665544

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=99.24  E-value=1.1e-12  Score=112.16  Aligned_cols=148  Identities=20%  Similarity=0.309  Sum_probs=112.9

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+..         |...+
T Consensus        86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v---------G~~~A  156 (258)
T 4fzw_A           86 QLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSV---------GKSLA  156 (258)
T ss_dssp             HHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHH---------CHHHH
T ss_pred             HHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHh---------CHHHH
Confidence            4556788899999999999999999999999999999999999999999 9988776655433222         77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHH--HH
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDA--YN  263 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a--~~  263 (315)
                        .+|+++++.+.+.++       .++|++..+.        ...+.+.+.      ....|+++..+...+.+++  .+
T Consensus       157 --~~llltg~~i~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e  227 (258)
T 4fzw_A          157 --SKMVLSGESITAQQA-------QQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQE  227 (258)
T ss_dssp             --HHHHHHCCCEEHHHH-------HHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             --HHHHHcCCcCcHHHH-------HHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence              999999999999999       7777774431        112333222      2467788877776666665  34


Q ss_pred             cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ..+...++.+ +|..|...+|.+|
T Consensus       228 ~~~~~~~~~s-~d~~Eg~~AF~eK  250 (258)
T 4fzw_A          228 RQLFTLLAAT-EDRHEGISAFLQK  250 (258)
T ss_dssp             HHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHhcC-HHHHHHHHHHhCC
Confidence            4566677788 8888888888765

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=99.23  E-value=1.7e-12  Score=111.46  Aligned_cols=150  Identities=18%  Similarity=0.271  Sum_probs=113.9

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ++.++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..++..+.    +     |..
T Consensus        91 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~----v-----G~~  161 (265)
T 3kqf_A           91 IRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRL----I-----GVG  161 (265)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHH----H-----CHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHH----h-----CHH
Confidence            456778889999999999999999999999999999999999999999999 999887665543222    1     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+|+++++.+.+.++       .++|++..+.        ...+.+.+      .....|+++..+...+.++++ 
T Consensus       162 ~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~  232 (265)
T 3kqf_A          162 RA--KELIYTGRRISAQEA-------KEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEAISNGIQVDLHTGLQ  232 (265)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            77  999999999999999       7778775431        11222221      124677777776666666654 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +......++.+ +|..+...+|.+|
T Consensus       233 ~e~~~~~~~~~s-~d~~eg~~af~ek  257 (265)
T 3kqf_A          233 MEKQAYEGVIHT-KDRLEGLQAFKEK  257 (265)
T ss_dssp             HHHHHHHHHHTC-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHHcC
Confidence             34455667777 8888888888765

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=99.23  E-value=3.7e-12  Score=113.49  Aligned_cols=152  Identities=17%  Similarity=0.187  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      +...++++..+.++++|+|++|||+++|+|..++..||++++++.++|+.|+.+ |++++.+..+. +.+++        
T Consensus        91 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~-l~rl~--------  161 (353)
T 4hdt_A           91 WFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYL-LSRAP--------  161 (353)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHH-HHTSS--------
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceeh-hhhhh--------
Confidence            344567788899999999999999999999999999999999999999999999 99999887764 34432        


Q ss_pred             cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HH-------HHh----------------------------
Q psy12573        195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AV-------ALT----------------------------  238 (315)
Q Consensus       195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~-------~l~----------------------------  238 (315)
                      | ..+  .+|+++++.+.+.++       .++|++..+. ..       .+.                            
T Consensus       162 g-~~a--~~l~ltG~~i~A~eA-------~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~  231 (353)
T 4hdt_A          162 G-KLG--LHAALTGAPFSGADA-------IVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWID  231 (353)
T ss_dssp             T-THH--HHHHHHCCCBCHHHH-------HHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHH
T ss_pred             h-HHH--HHHHhcCCCCCHHHH-------HHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHH
Confidence            5 344  999999999999999       7777774431 00       010                            


Q ss_pred             ---------------------------hhc------CHHHHHHHHhcCCCC-CHHHHH--HcCccccccCCchHHHHHHH
Q psy12573        239 ---------------------------RKV------PLGVVRSMTITGIPI-SAQDAY--NAGLITRVVSSNEELESETK  282 (315)
Q Consensus       239 ---------------------------~~~------g~~~a~~~~~~g~~~-~a~~a~--~~Glv~~v~~~~~~~~~~~~  282 (315)
                                                 +.+      ....+++.+..+... +.++++  +..+..+++.+ +|+.|.++
T Consensus       232 ~~f~~~~~~~i~~~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s-~D~~EGvr  310 (353)
T 4hdt_A          232 ECYTGDTVADIIAALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKS-HDLVEGIR  310 (353)
T ss_dssp             HHTTCSSHHHHHHHHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCC-chHHHHHh
Confidence                                       001      113556777766665 677764  45677788889 99999999


Q ss_pred             HHH--HH
Q psy12573        283 VLT--SA  287 (315)
Q Consensus       283 ~~~--~~  287 (315)
                      +|.  +|
T Consensus       311 Afl~dek  317 (353)
T 4hdt_A          311 AQLVDKD  317 (353)
T ss_dssp             HHHC---
T ss_pred             hhhhCcC
Confidence            987  55

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.22  E-value=7e-11  Score=98.03  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             HHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCch-------------------HHH
Q psy12573        178 LMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTP-------------------AVA  236 (315)
Q Consensus       178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~-------------------~~~  236 (315)
                      .+..+..+++||++.+.|.|.++|..|+++||.  +++.+.++|++++..-|. +..+                   ...
T Consensus        95 I~~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~-~~~G~~~di~~~~~~i~~~~~~~~~~  173 (218)
T 1y7o_A           95 IVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGT-GGGTQQTDMAIAPEHLLKTRNTLEKI  173 (218)
T ss_dssp             HHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEecccccc-cCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            556677889999999999999999999999999  999999999999887433 2111                   123


Q ss_pred             HhhhcCH--HHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        237 LTRKVPL--GVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       237 l~~~~g~--~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +++..|.  ..+++++.+++.++++||+++||||++++. ++
T Consensus       174 ~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~-~~  214 (218)
T 1y7o_A          174 LAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN-NS  214 (218)
T ss_dssp             HHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC-C-
T ss_pred             HHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCc-CC
Confidence            5555555  588888999999999999999999999987 54

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=99.21  E-value=1.2e-12  Score=112.83  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=112.6

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |++++.+..++..+.    +     |..
T Consensus        95 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~----v-----G~~  165 (275)
T 3hin_A           95 WHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRL----I-----GVA  165 (275)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHH----H-----CHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHH----h-----CHH
Confidence            456677889999999999999999999999999999999999999999999 998887665543222    1     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHHHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDAYN  263 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a~~  263 (315)
                      .+  .+|+++++.+.+.++       .++|++..+.        ...+++.+.      ....|+++..+...+.+++++
T Consensus       166 ~A--~~l~ltG~~i~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~  236 (275)
T 3hin_A          166 RM--ADMMLTGRVYSAAEG-------VVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEANPQTGLL  236 (275)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHTHHHHHHHSCHHHHHH
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            77  999999999999999       7777774331        122333332      235566666555555555533


Q ss_pred             --cCccccccCCchHHHHHHHHHHHHHH
Q psy12573        264 --AGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       264 --~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                        .-....++.+ +|..+...+|.+|-.
T Consensus       237 ~e~~~~~~~~~s-~d~~eg~~AF~ekR~  263 (275)
T 3hin_A          237 MESLMATVAQSD-QEAKTRIRAFLDHKT  263 (275)
T ss_dssp             HHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHHcCCC
Confidence              3344456677 888888888887743

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=99.20  E-value=1.6e-12  Score=111.22  Aligned_cols=149  Identities=17%  Similarity=0.195  Sum_probs=106.4

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      .+++..+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..++..+    .+     |...
T Consensus        97 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r----~v-----G~~~  167 (264)
T 3he2_A           97 IELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSS----LV-----GHGR  167 (264)
T ss_dssp             HHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHH----HH-----CHHH
T ss_pred             HHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHH----Hh-----CHHH
Confidence            35667788999999999999999999999999999999999999999999 99887765543322    22     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch----HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHcCccc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP----AVALTRKV---P---LGVVRSMTITGIPISAQDAYNAGLIT  268 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~----~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~Glv~  268 (315)
                      +  .+|+++++.+.+.++       .++|++..+.    ...+++.+   +   ....|+++..+..+...-..+.....
T Consensus       168 A--~~llltG~~i~A~eA-------~~~GLV~~v~~~~~a~~~A~~la~~~p~a~~~~K~~l~~~~~~~~~~~~e~~~~~  238 (264)
T 3he2_A          168 A--RAMLLSAEKLTAEIA-------LHTGMANRIGTLADAQAWAAEIARLAPLAIQHAKRVLNDDGAIEEAWPAHKELFD  238 (264)
T ss_dssp             H--HHHHHHCCCEEHHHH-------HHHTSCSEECCHHHHHHHHHHHHTSCHHHHHHHHHHHHTSSCSCCCCHHHHHHHH
T ss_pred             H--HHHHHcCCCccHHHH-------HHCCCeEEEecHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            7  999999999999999       7777775542    12233222   1   24667777665333221122233444


Q ss_pred             cccCCchHHHHHHHHHHHH
Q psy12573        269 RVVSSNEELESETKVLTSA  287 (315)
Q Consensus       269 ~v~~~~~~~~~~~~~~~~~  287 (315)
                      .++.+ +|..|...+|.+|
T Consensus       239 ~~~~s-~d~~Eg~~AF~ek  256 (264)
T 3he2_A          239 KAWGS-QDVIEAQVARMEK  256 (264)
T ss_dssp             HHHTS-HHHHHHHHHHHTT
T ss_pred             HHhCC-HHHHHHHHHHhcC
Confidence            56667 7777777777765

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=99.19  E-value=3.5e-12  Score=110.33  Aligned_cols=151  Identities=20%  Similarity=0.276  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHH-HHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILV-STCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      .++.++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++. +..+..+...+.         .|
T Consensus       101 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~---------vG  171 (279)
T 3g64_A          101 MTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRV---------VG  171 (279)
T ss_dssp             HHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHH---------HC
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHH---------hC
Confidence            3567778899999999999999999999999999999999999999999999 998 876655433222         27


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHHHhcCCCCCHHHH
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~~~~g~~~~a~~a  261 (315)
                      ...+  .+|+++++.+.+.++       .++|++..+.        ...+++.+      .....|+++..+...+.+++
T Consensus       172 ~~~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  242 (279)
T 3g64_A          172 LGHA--TRLLMLGDTVRAPEA-------ERIGLISELTEEGRADEAARTLARRLADGPALAHAQTKALLTAELDMPLAAA  242 (279)
T ss_dssp             HHHH--HHHHHHCCCEEHHHH-------HHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHH--HHHHHcCCCcCHHHH-------HHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            7777  999999999999999       6777764331        11233222      12467777777666666666


Q ss_pred             H--HcCccccccCCchHHHHHHHHHHHH
Q psy12573        262 Y--NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       262 ~--~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +  +......++.+ +|..+...+|.+|
T Consensus       243 ~~~e~~~~~~~~~s-~d~~eg~~af~ek  269 (279)
T 3g64_A          243 VELDASTQALLMTG-EDYAEFHAAFTEK  269 (279)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHHHHhcC
Confidence            4  33455667778 8888888888876

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=99.18  E-value=3.6e-12  Score=108.87  Aligned_cols=149  Identities=15%  Similarity=0.208  Sum_probs=87.4

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+.    +     |...
T Consensus        89 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~----v-----G~~~  159 (256)
T 3qmj_A           89 RGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQL----V-----GRQN  159 (256)
T ss_dssp             HHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHH----H-----HHHH
T ss_pred             HHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHH----h-----CHHH
Confidence            45667788999999999999999999999999999999999999999999 999887765543222    1     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHHHhcCCCCCHHHHH--
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSMTITGIPISAQDAY--  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~~~~g~~~~a~~a~--  262 (315)
                      +  .+|+++++.+.+.++       .++|++..+.        ...+++.+      .....|+++..+...+.++++  
T Consensus       160 A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~  230 (256)
T 3qmj_A          160 A--AWLLMSSEWIDAEEA-------LRMGLVWRICSPEELLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASAR  230 (256)
T ss_dssp             H--HHHHHSCCCEEHHHH-------HHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHCC-----------
T ss_pred             H--HHHHHcCCCCCHHHH-------HHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence            7  999999999999999       7778775431        11222222      124667787776655555553  


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +.-....++.+ ++..+...+|.+|
T Consensus       231 e~~~~~~~~~s-~d~~eg~~af~ek  254 (256)
T 3qmj_A          231 ENAHFAELMGA-QANAAALADFTDR  254 (256)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHhcC-HHHHHHHHHHHcc
Confidence            33455567777 8888888888765

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=99.17  E-value=3e-12  Score=109.65  Aligned_cols=149  Identities=17%  Similarity=0.252  Sum_probs=107.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      +.++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+...+.    +     |+..
T Consensus        88 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~----v-----G~~~  158 (261)
T 3pea_A           88 QVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRY----V-----GKAK  158 (261)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHH----H-----CHHH
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHH----h-----CHHH
Confidence            45677889999999999999999999999999999999999999999999 999877665533222    1     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc------CHHHHHHHHhcCCCCCHHHHH--
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV------PLGVVRSMTITGIPISAQDAY--  262 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~------g~~~a~~~~~~g~~~~a~~a~--  262 (315)
                      +  .+++++++.+.+.++       .++|++....  .      ..+++.+      .....|+++..+...+.++++  
T Consensus       159 a--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~  229 (261)
T 3pea_A          159 A--CEMMLTSTPITGAEA-------LKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATARAVLELLQTTKSSHYYEGVQR  229 (261)
T ss_dssp             H--HHHHHHCCCEEHHHH-------HHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred             H--HHHHHcCCCCCHHHH-------HHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence            7  999999999999999       7778875441  1      1122221      123566777666554444443  


Q ss_pred             HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +......++.+ +|..+...+|.+|
T Consensus       230 e~~~~~~~~~s-~d~~eg~~af~ek  253 (261)
T 3pea_A          230 EAQIFGEVFTS-EDGREGVAAFLEK  253 (261)
T ss_dssp             HHHHHHHHHHS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCC-HHHHHHHHHHHcC
Confidence            33344455666 6777777776654

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=99.16  E-value=5.5e-12  Score=108.94  Aligned_cols=152  Identities=19%  Similarity=0.251  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ..+++++..+.+.++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |+.++.+..++.    +..+     |
T Consensus        94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l----~r~v-----G  164 (275)
T 1dci_A           94 SRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL----PKVI-----G  164 (275)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG----GGTC-----S
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH----HHHh-----C
Confidence            34566778889999999999999999999999999999999999999999999 999887765532    3323     7


Q ss_pred             c-cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch---HH------HHhhhc---C---HHHHHHHHhcCCCCCHH
Q psy12573        196 V-AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP---AV------ALTRKV---P---LGVVRSMTITGIPISAQ  259 (315)
Q Consensus       196 ~-~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~---~~------~l~~~~---g---~~~a~~~~~~g~~~~a~  259 (315)
                      . ..+  .+|+++++.+.+.++       .++|++..+.   ..      .+.+.+   +   ....|+++..+...+.+
T Consensus       165 ~~~~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~  235 (275)
T 1dci_A          165 NRSLV--NELTFTARKMMADEA-------LDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVD  235 (275)
T ss_dssp             CHHHH--HHHHHHCCEEEHHHH-------HHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHH
T ss_pred             cHHHH--HHHHHcCCCCCHHHH-------HHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence            6 666  999999999999999       7777774431   11      122222   1   23556666655444555


Q ss_pred             HHH--HcCccccccCCchHHHHHHHHHHHH
Q psy12573        260 DAY--NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       260 ~a~--~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +++  +..+...++.+ +|..+...+|.+|
T Consensus       236 ~~l~~e~~~~~~~~~s-~d~~eg~~af~ek  264 (275)
T 1dci_A          236 ESLDYMATWNMSMLQT-QDIIKSVQAAMEK  264 (275)
T ss_dssp             HHHHHHHHHHHHHTSS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcC-HHHHHHHHHHHhc
Confidence            443  33344456677 7888888887764

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=99.16  E-value=1.4e-11  Score=106.72  Aligned_cols=150  Identities=28%  Similarity=0.496  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      .+++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+ ..+.    +     |.
T Consensus       114 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~----v-----G~  183 (287)
T 2vx2_A          114 TCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARA----V-----PR  183 (287)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTT----S-----CH
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHH----h-----hH
Confidence            3556777889999999999999999999999999999999999999999999 9999888766 3222    2     77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ..+  .+|+++++.+.+.++       .++|++..+.        ...+++.+   .   ....|+++..+...+.++++
T Consensus       184 ~~A--~~llltg~~i~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l  254 (287)
T 2vx2_A          184 KVA--LEMLFTGEPISAQEA-------LLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAY  254 (287)
T ss_dssp             HHH--HHHHHHCCCEEHHHH-------HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHH--HHHHHhCCCCCHHHH-------HHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHH
Confidence            776  999999999999999       7778775431        11122221   1   13456665554444444442


Q ss_pred             --HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 --NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 --~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                        +......++.+ ++..+...+|.+|
T Consensus       255 ~~e~~~~~~~~~s-~d~~egi~af~ek  280 (287)
T 2vx2_A          255 YLTSQAMVDNLAL-RDGQEGITAFLQK  280 (287)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHcC
Confidence              22233445556 6666666666543

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=99.15  E-value=1e-11  Score=106.44  Aligned_cols=156  Identities=24%  Similarity=0.302  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        114 EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                      ..+..+++++..+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+ .+..+...    +.+   
T Consensus        88 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~-~g~~~~l~----r~v---  159 (263)
T 3l3s_A           88 DLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFC-TTPAVAVS----RVI---  159 (263)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCC-HHHHHHHH----TTS---
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCC-ccHHHHHH----HHc---
Confidence            34455678888999999999999999999999999999999999999999999999 9884 44444322    222   


Q ss_pred             EccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCH
Q psy12573        193 ISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISA  258 (315)
Q Consensus       193 v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a  258 (315)
                        |...+  .+++++++.+.+.++       .++|++..+. .       ..+++.+   +   ....|+++..+...+.
T Consensus       160 --G~~~A--~~l~ltg~~~~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l  228 (263)
T 3l3s_A          160 --GRRAV--TEMALTGATYDADWA-------LAAGLINRILPEAALATHVADLAGALAARNQAPLRRGLETLNRHLELPL  228 (263)
T ss_dssp             --CHHHH--HHHHHHCCEEEHHHH-------HHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSCH
T ss_pred             --CHHHH--HHHHHcCCCCCHHHH-------HHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCH
Confidence              77777  999999999999999       7778875541 1       1122222   1   2366777776666565


Q ss_pred             HHHH--HcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        259 QDAY--NAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       259 ~~a~--~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                      ++++  +......++.+ +|..|...+|.+...
T Consensus       229 ~~~l~~e~~~~~~~~~s-~d~~Eg~~Af~~~~~  260 (263)
T 3l3s_A          229 EQAYALATPVMVEHFMD-PGRRHLDWIDEGHHH  260 (263)
T ss_dssp             HHHHHHHHHHHHHHHC-----------------
T ss_pred             HHHHHHHHHHHHHHhCC-HHHHHHHHHhhccCc
Confidence            5553  33455566677 777777777766543

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=99.15  E-value=3e-12  Score=109.71  Aligned_cols=148  Identities=19%  Similarity=0.250  Sum_probs=112.4

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+.         -|...+
T Consensus        91 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~---------vG~~~A  161 (263)
T 3moy_A           91 SGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRA---------VGKAKA  161 (263)
T ss_dssp             HHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHH---------HCHHHH
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHH---------hCHHHH
Confidence            3456678899999999999999999999999999999999999999999 998876544332221         177777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc------CHHHHHHHHhcCCCCCHHHHH--H
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV------PLGVVRSMTITGIPISAQDAY--N  263 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~------g~~~a~~~~~~g~~~~a~~a~--~  263 (315)
                        .+|+++++.+.+.++       .++|++..+.  .      ..+++.+      .....|+++..+...+.++++  +
T Consensus       162 --~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e  232 (263)
T 3moy_A          162 --MDLCLTGRSLTAEEA-------ERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVKDAINEAFERPLSAGMRYE  232 (263)
T ss_dssp             --HHHHHHCCEEEHHHH-------HHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             --HHHHHcCCCCCHHHH-------HHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence              999999999999999       7888875441  1      1122222      124778888877766766664  3


Q ss_pred             cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ......++.+ +|..+...+|.+|
T Consensus       233 ~~~~~~~~~s-~d~~eg~~AF~ek  255 (263)
T 3moy_A          233 RDAFYAMFDT-HDQTEGMTAFLEK  255 (263)
T ss_dssp             HHHHHHHTTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHhCC-HHHHHHHHHHHhC
Confidence            4456677888 8888988888776

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=99.15  E-value=5.9e-12  Score=108.10  Aligned_cols=149  Identities=23%  Similarity=0.316  Sum_probs=108.0

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+.. ...+.    +     |..
T Consensus        88 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~----v-----G~~  157 (268)
T 3i47_A           88 LGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRA----I-----GER  157 (268)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHH----H-----CHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHH----h-----CHH
Confidence            456777889999999999999999999999999999999999999999999 998876654 22221    2     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHH---
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQD---  260 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~---  260 (315)
                      .+  .+|+++++.+.+.++       .++|++..+.        ...+++.+   +   ....|+++..+...+.++   
T Consensus       158 ~A--~~llltg~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~  228 (268)
T 3i47_A          158 AA--KMLFMSAEVFDATRA-------YSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEELV  228 (268)
T ss_dssp             HH--HHHHHHCCEEEHHHH-------HHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred             HH--HHHHHcCCccCHHHH-------HHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCChhHHHH
Confidence            77  999999999999999       7888885441        11222222   1   236677776543333222   


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHH
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ..+......++.+ +|..+...+|.+|
T Consensus       229 ~~e~~~~~~~~~s-~d~~eg~~AF~ek  254 (268)
T 3i47_A          229 RYTASLIAHKRVS-DEGQEGLKAFLNK  254 (268)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHHHcC
Confidence            2333344556667 7888888888776

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=99.15  E-value=4.7e-12  Score=108.06  Aligned_cols=148  Identities=22%  Similarity=0.290  Sum_probs=109.6

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+    .+     |...+
T Consensus        83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r----~v-----G~~~A  153 (255)
T 3p5m_A           83 RVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPL----LI-----GRART  153 (255)
T ss_dssp             HHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHH----HH-----CHHHH
T ss_pred             HHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHH----Hh-----CHHHH
Confidence            4566788899999999999999999999999999999999999999999 99887766543222    22     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHHHhcCCCCCHHHHH--H
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSMTITGIPISAQDAY--N  263 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~~~~g~~~~a~~a~--~  263 (315)
                        .+|+++++.+.+.++       .++|++..+.        ...+.+.+      .....|+++..+...+.++++  +
T Consensus       154 --~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e  224 (255)
T 3p5m_A          154 --SRMAMTAEKISAATA-------FEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIE  224 (255)
T ss_dssp             --HHHHHHCCCEEHHHH-------HHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             --HHHHHcCCCcCHHHH-------HHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence              999999999999999       7777774431        11222222      123567777655545555553  3


Q ss_pred             cCccccccCCchHHHHHHHHHHHH
Q psy12573        264 AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ......++.+ ++..+...+|.+|
T Consensus       225 ~~~~~~~~~s-~d~~eg~~af~ek  247 (255)
T 3p5m_A          225 AEGQLALVET-ADFREGARAFRER  247 (255)
T ss_dssp             HHHHHHHTTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHhCC-HHHHHHHHHHHcC
Confidence            3455567777 8888888888765

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=99.14  E-value=5.6e-12  Score=108.75  Aligned_cols=145  Identities=20%  Similarity=0.268  Sum_probs=112.0

Q ss_pred             HHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhh
Q psy12573        124 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGC  202 (315)
Q Consensus       124 ~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~  202 (315)
                      ..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.    +     |...+  .
T Consensus       109 ~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~----v-----G~~~A--~  177 (278)
T 3h81_A          109 GKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRA----I-----GKAKA--M  177 (278)
T ss_dssp             HHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHH----H-----CHHHH--H
T ss_pred             HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHH----h-----CHHHH--H
Confidence            4577899999999999999999999999999999999999999999 998887665533222    1     77777  9


Q ss_pred             HHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHHHhcCCCCCHHHHHH--cCc
Q psy12573        203 QLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSMTITGIPISAQDAYN--AGL  266 (315)
Q Consensus       203 ~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~~~~g~~~~a~~a~~--~Gl  266 (315)
                      +|+++++.+.+.++       .++|++..+.        ...+++.+      ....+|+++..+...+.+++++  ...
T Consensus       178 ~l~ltG~~~~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~  250 (278)
T 3h81_A          178 DLILTGRTMDAAEA-------ERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRL  250 (278)
T ss_dssp             HHHHHCCCEEHHHH-------HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCCcCHHHH-------HHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence            99999999999999       7778775441        11122222      1247788888877777777643  345


Q ss_pred             cccccCCchHHHHHHHHHHHH
Q psy12573        267 ITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       267 v~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ...++.+ +|..+...+|.+|
T Consensus       251 ~~~~~~s-~d~~eg~~AF~ek  270 (278)
T 3h81_A          251 FHSAFAT-EDQSEGMAAFIEK  270 (278)
T ss_dssp             HHHHTTS-HHHHHHHHHHHTT
T ss_pred             HHHHhCC-HHHHHHHHHHHcC
Confidence            6677788 8899999888876

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=99.14  E-value=2.2e-12  Score=112.39  Aligned_cols=147  Identities=15%  Similarity=0.154  Sum_probs=89.7

Q ss_pred             HHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhh
Q psy12573        123 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAG  201 (315)
Q Consensus       123 ~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G  201 (315)
                      +..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+..         |...+  
T Consensus       123 ~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v---------G~~~A--  191 (298)
T 3qre_A          123 PHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLT---------SWAVA--  191 (298)
T ss_dssp             TTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHS---------CHHHH--
T ss_pred             HHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhc---------CHHHH--
Confidence            34567899999999999999999999999999999999999999999 9999887665443322         77777  


Q ss_pred             hHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc----C---HHHHHHHHhcCCCCCHHHH--HHc
Q psy12573        202 CQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV----P---LGVVRSMTITGIPISAQDA--YNA  264 (315)
Q Consensus       202 ~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~----g---~~~a~~~~~~g~~~~a~~a--~~~  264 (315)
                      .+|+++++.+.+.++       .++|++..+.        ...+++.+    +   ....|+++..+...+.+++  .+.
T Consensus       192 ~ellltg~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~  264 (298)
T 3qre_A          192 LDLLLSGRTFLAEEA-------AQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAE  264 (298)
T ss_dssp             HHHHHHCCEEEHHHH-------HHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGGC----------
T ss_pred             HHHHHcCCCCCHHHH-------HHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence            999999999999999       7788875431        11233222    2   2366777776655444444  334


Q ss_pred             CccccccCCchHHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                      .....++.+ +|..+.+.+|.+|-
T Consensus       265 ~~~~~~~~s-~d~~Egv~AF~ekR  287 (298)
T 3qre_A          265 VLLREAMPR-PDVIEGIVSFLEKR  287 (298)
T ss_dssp             ------------------------
T ss_pred             HHHHHHhCC-HHHHHHHHHHHcCC
Confidence            455667778 88999999998773

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=99.14  E-value=6.5e-12  Score=109.03  Aligned_cols=150  Identities=15%  Similarity=0.205  Sum_probs=107.6

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +.+++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         .|..
T Consensus       108 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~---------vG~~  178 (291)
T 2fbm_A          108 IKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKM---------MGKA  178 (291)
T ss_dssp             HHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHH---------HCHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHH---------HhHH
Confidence            456667888999999999999999999999999999999999999999999 998887765533222         2777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+|+++++.+.+.++       .++|++..+.        ...+++.+.      ....|+++..+...+.++++ 
T Consensus       179 ~A--~el~ltg~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~  249 (291)
T 2fbm_A          179 SA--NEMLIAGRKLTAREA-------CAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANE  249 (291)
T ss_dssp             HH--HHHHTSCCEEEHHHH-------HHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HH--HHHHHcCCccCHHHH-------HHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccCHHHHHH
Confidence            76  999999999999999       7777764331        112333221      23567777665444444442 


Q ss_pred             -HcCccccccCCchHHHHHHHHH-HHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVL-TSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~-~~~  287 (315)
                       +......++.+ +|..+...+| .+|
T Consensus       250 ~e~~~~~~~~~s-~d~~eg~~Af~~ek  275 (291)
T 2fbm_A          250 RECEVLRKIWSS-AQGIESMLKIPLLG  275 (291)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHTC----
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHHhcC
Confidence             33344556677 8888888888 765

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=99.13  E-value=9.1e-12  Score=107.93  Aligned_cols=151  Identities=28%  Similarity=0.456  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ..+++++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+. ..+..+.    +++-+     |
T Consensus       106 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~----L~r~v-----G  175 (286)
T 3myb_A          106 ARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVA----LSRNV-----G  175 (286)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHH----HTTTS-----C
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHH----HHHHc-----C
Confidence            34567778899999999999999999999999999999999999999999999 988 5555543    23333     7


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHH
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a  261 (315)
                      ...+  .+|+++++.+.+.++       .++|++..+.        ...+++.+   .   ....|+++..+...+.+++
T Consensus       176 ~~~A--~~llltG~~i~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~  246 (286)
T 3myb_A          176 RKAA--FEMLVTGEFVSADDA-------KGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIETDIESA  246 (286)
T ss_dssp             HHHH--HHHHHHCCCEEHHHH-------HHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHH--HHHHHcCCCCCHHHH-------HHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHH
Confidence            7777  999999999999999       7778775441        11122222   1   2355666665544555555


Q ss_pred             H--HcCccccccCCchHHHHHHHHHHHH
Q psy12573        262 Y--NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       262 ~--~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +  +......++.+ ++..+...+|.+|
T Consensus       247 l~~e~~~~~~~~~s-~d~~egi~aFlek  273 (286)
T 3myb_A          247 YADAGTTMACNMMD-PSALEGVSAFLEK  273 (286)
T ss_dssp             HHHHHHHHHHHHHS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCC-HHHHHHHHHHHcc
Confidence            3  33444555666 7777777777665

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=99.13  E-value=1.2e-11  Score=105.55  Aligned_cols=149  Identities=21%  Similarity=0.273  Sum_probs=107.7

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+ .+...+..         |..
T Consensus        83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~v---------G~~  152 (253)
T 1uiy_A           83 LMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAV---------GEK  152 (253)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHS---------CHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHh---------CHH
Confidence            345667788999999999999999999999999999999999999999999 9999887 65443322         666


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+++++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++..+...+.++++ 
T Consensus       153 ~a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~  223 (253)
T 1uiy_A          153 AA--KDLLLTGRLVEAREA-------KALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFR  223 (253)
T ss_dssp             HH--HHHHHHCCEEEHHHH-------HHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred             HH--HHHHHhCCccCHHHH-------HHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHH
Confidence            66  999999999999999       7777774431        11222221   1   23556666665555555543 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +......++.+ ++..+...+|.+|
T Consensus       224 ~e~~~~~~~~~s-~d~~eg~~af~~k  248 (253)
T 1uiy_A          224 LAALANAWVRET-GDLAEGIRAFFEK  248 (253)
T ss_dssp             HHHHHHHHGGGC-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHhCc
Confidence             23334455666 7777777777654

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=99.13  E-value=4e-12  Score=108.98  Aligned_cols=155  Identities=15%  Similarity=0.172  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      +..+++++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..++..+.         -
T Consensus        87 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~---------v  157 (263)
T 3lke_A           87 LHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRI---------I  157 (263)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHH---------H
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHH---------h
Confidence            344567788899999999999999999999999999999999999999999999 999887766543222         2


Q ss_pred             cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH---------HHHhhhc---C---HHHHHHHHhcCCCCCHH
Q psy12573        195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA---------VALTRKV---P---LGVVRSMTITGIPISAQ  259 (315)
Q Consensus       195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~---------~~l~~~~---g---~~~a~~~~~~g~~~~a~  259 (315)
                      |...+  .+|+++++.+.+.++       .++|++..+..         ..+++.+   +   ....|+++..+...+.+
T Consensus       158 G~~~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~  228 (263)
T 3lke_A          158 GYEQT--MNLLLEGKLFTSEEA-------LRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATKKLLKGKAAEELK  228 (263)
T ss_dssp             CHHHH--HHHHHHCCCEEHHHH-------HHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTHHHHHH
T ss_pred             CHHHH--HHHHHhCCCcCHHHH-------HHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHH
Confidence            77777  999999999999999       77787754411         1122221   1   23566766655443444


Q ss_pred             HHH--HcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        260 DAY--NAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       260 ~a~--~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                      +++  +......++.+ +|..+...++.++..
T Consensus       229 ~~~~~e~~~~~~~~~s-~d~~e~~~~~~~~~~  259 (263)
T 3lke_A          229 QQLEQETEELVALFKQ-TEIKKRLEALVEGHH  259 (263)
T ss_dssp             HHHHHHHHHHHHHTTS-HHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHhcC-HHHHHHHHhhhccCC
Confidence            443  33455566777 788888777777654

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=99.13  E-value=5.7e-12  Score=109.45  Aligned_cols=154  Identities=19%  Similarity=0.259  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHH-HHHHHHHHhcCCCcEEEE
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVST-CSDLMLSILRHPVPILAI  192 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~~kpvIa~  192 (315)
                      ....+++++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ ++.+. .+..+...+.        
T Consensus       108 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~--------  179 (290)
T 3sll_A          108 SMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRA--------  179 (290)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHH--------
Confidence            3445677888899999999999999999999999999999999999999999999 99987 6655433222        


Q ss_pred             EccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHHHhcCCC-CC
Q psy12573        193 ISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSMTITGIP-IS  257 (315)
Q Consensus       193 v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~~~~g~~-~~  257 (315)
                       -|...+  .+|+++++.+.+.++       .++|++..+.        ...+++.+      .....|+++..+.. .+
T Consensus       180 -vG~~~A--~~llltG~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~  249 (290)
T 3sll_A          180 -IGTSRA--SDIMLTGRDVDADEA-------ERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAAS  249 (290)
T ss_dssp             -HCHHHH--HHHHHHCCCEEHHHH-------HHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSC
T ss_pred             -hCHHHH--HHHHHcCCCCCHHHH-------HHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccCC
Confidence             177777  999999999999999       7778775441        11222222      12356777766555 55


Q ss_pred             HHHHHH--cCcccccc-CCchHHHHHHHHHHHH
Q psy12573        258 AQDAYN--AGLITRVV-SSNEELESETKVLTSA  287 (315)
Q Consensus       258 a~~a~~--~Glv~~v~-~~~~~~~~~~~~~~~~  287 (315)
                      .+++++  ......++ .+ +|..+...+|.+|
T Consensus       250 l~~~l~~e~~~~~~~~~~s-~d~~eg~~AFlek  281 (290)
T 3sll_A          250 LESHMHQEGLGQLYVRLLT-DNFEEATAARKEK  281 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHcC
Confidence            555533  33445555 66 7788888888765

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=99.13  E-value=1.1e-11  Score=106.31  Aligned_cols=149  Identities=15%  Similarity=0.206  Sum_probs=106.0

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhc-CCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTAS-KFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ++++..+.+.++|+|++|||.+.|+|..++..||++++++.+ +|+.|+.+ |+.++.+..+...+.         -|..
T Consensus        91 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~---------vG~~  161 (265)
T 2ppy_A           91 NETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARL---------IGYS  161 (265)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHH---------HCHH
T ss_pred             HHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHH---------hCHH
Confidence            455677889999999999999999999999999999999999 99999999 999887766543222         2766


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+++++++.+.+.++       .++|++....        ...+.+.+   .   ....|+++..+...+.++++ 
T Consensus       162 ~a--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~  232 (265)
T 2ppy_A          162 RA--LDMNITGETITPQEA-------LEIGLVNRVFPQAETRERTREYARKLANSATYAVSNIKLAIMNGKEMPLNVAIR  232 (265)
T ss_dssp             HH--HHHHHHCCCBCHHHH-------HHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HH--HHHHHhCCccCHHHH-------HHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            66  999999999999999       7778775441        11122221   1   23556666655555555443 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +......++.+ ++..+...+|.+|
T Consensus       233 ~e~~~~~~~~~s-~d~~egi~af~ek  257 (265)
T 2ppy_A          233 YEGELQNLLFRS-EDAKEGLSAFLEK  257 (265)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHHcC
Confidence             22334455566 6666666666654

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=99.13  E-value=3.5e-12  Score=109.67  Aligned_cols=152  Identities=22%  Similarity=0.269  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      ...+++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+.    ++ -+     
T Consensus        94 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~----l~-~v-----  163 (267)
T 3oc7_A           94 AREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTL----LP-KL-----  163 (267)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHH----TT-TS-----
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHH----HH-Hh-----
Confidence            344567788899999999999999999999999999999999999999999999 99988776652    33 22     


Q ss_pred             cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH
Q psy12573        195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP------AVALTRKV---P---LGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~  262 (315)
                      |...+  .+++++++.+.+.++       .++|++..+.      ...+.+.+   .   ....|+++..+...+.++++
T Consensus       164 G~~~A--~~l~ltg~~~~a~eA-------~~~GLv~~v~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~  234 (267)
T 3oc7_A          164 SARAA--ARYYLTGEKFDARRA-------EEIGLITMAAEDLDAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDA  234 (267)
T ss_dssp             CHHHH--HHHHHHCCCBCHHHH-------HHHTSSSEECSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHH--HHHHHcCCccCHHHH-------HHCCChhhhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHH
Confidence            87777  999999999999999       6667665431      11222222   1   23556666554333333432


Q ss_pred             --HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 --NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 --~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                        +......++.+ +|..+...+|.+|
T Consensus       235 ~~e~~~~~~~~~s-~d~~eg~~af~ek  260 (267)
T 3oc7_A          235 ERLAEESARLFVS-DEAREGMLAFLEK  260 (267)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHHHcC
Confidence              23344556667 7777777777764

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=99.12  E-value=4.6e-12  Score=108.70  Aligned_cols=149  Identities=21%  Similarity=0.248  Sum_probs=106.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         .|...
T Consensus        89 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~---------vG~~~  159 (266)
T 3fdu_A           89 FVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQ---------AGYHK  159 (266)
T ss_dssp             HHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHH---------HCHHH
T ss_pred             HHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHH---------hCHHH
Confidence            35567788999999999999999999999999999999999999999999 999887766543221         27777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHH--HHc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP------AVALTRKV---P---LGVVRSMTITGIPISAQDA--YNA  264 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~~~  264 (315)
                      +  .+|+++++.+.+.++       .++|++..+.      ...+++.+   +   ....|+++..+. .+.+++  .+.
T Consensus       160 A--~~l~ltg~~i~A~eA-------~~~GLv~~vv~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~-~~l~~~l~~e~  229 (266)
T 3fdu_A          160 A--AELLFTAKKFNAETA-------LQAGLVNEIVEDAYATAQATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEA  229 (266)
T ss_dssp             H--HHHHHHCCEECHHHH-------HHTTSCSEECSCHHHHHHHHHHHHHTSCHHHHHHHHHHHTTTH-HHHHHHHHHHH
T ss_pred             H--HHHHHhCCCcCHHHH-------HHCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh-ccHHHHHHHHH
Confidence            7  999999999999999       7777774431      11222222   1   235666665542 223333  233


Q ss_pred             CccccccCCchHHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                      .....++.+ +|..+...+|.+|-
T Consensus       230 ~~~~~~~~s-~d~~eg~~aF~ekR  252 (266)
T 3fdu_A          230 EIFMQRVQS-PEMLEAVQAFMQKR  252 (266)
T ss_dssp             HHHHHHHTC-HHHHHHHHHHC---
T ss_pred             HHHHHHhCC-HHHHHHHHHHHcCC
Confidence            455566777 88888888887764

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=99.12  E-value=7.1e-12  Score=107.36  Aligned_cols=150  Identities=13%  Similarity=0.195  Sum_probs=103.5

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         -|..
T Consensus        90 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~---------vG~~  160 (261)
T 2gtr_A           90 IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKI---------MGGA  160 (261)
T ss_dssp             HHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHH---------HCHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHH---------cCHH
Confidence            456667888999999999999999999999999999999999999999999 998877665533222         2777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+|+++++.+.+.++       .++|++.... .       ..+.+.+   +   ....|+++..+...+.++++ 
T Consensus       161 ~a--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~  231 (261)
T 2gtr_A          161 SA--NEMLLSGRKLTAQEA-------CGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANE  231 (261)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCHHHHHH
Confidence            76  999999999999999       7888875441 1       1122211   1   13455665544433333332 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +......++.+ ++..+...+|.+|
T Consensus       232 ~e~~~~~~~~~s-~d~~eg~~af~ek  256 (261)
T 2gtr_A          232 RECEVLKKIWGS-AQGMDSMLKYLQR  256 (261)
T ss_dssp             HHHHHHHHHHHS-TTTTHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHHcc
Confidence             22233344455 5566666666655

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=99.12  E-value=7.1e-12  Score=107.85  Aligned_cols=151  Identities=17%  Similarity=0.185  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      .+++++..+.+.++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         -|.
T Consensus        88 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~---------vG~  158 (269)
T 1nzy_A           88 WWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARI---------VGM  158 (269)
T ss_dssp             HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHH---------HHH
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHH---------hhH
Confidence            3556777889999999999999999999999999999999999999999999 999887765433222         176


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc---C---HHHHHHHHhcCCCCCHHHHH
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV---P---LGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~---g---~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ..+  .+|+++++.+.+.++       .++|++.... . .      .+.+.+   +   ....|+++..+...+.++++
T Consensus       159 ~~a--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l  229 (269)
T 1nzy_A          159 RRA--MELMLTNRTLYPEEA-------KDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECT  229 (269)
T ss_dssp             HHH--HHHHHHCCCBCHHHH-------HHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHH--HHHHHcCCCCCHHHH-------HHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHH
Confidence            666  999999999999999       7888886652 1 1      122221   1   13556666554444444442


Q ss_pred             --HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 --NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 --~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                        +......++.+ ++..+...+|.++
T Consensus       230 ~~e~~~~~~~~~s-~d~~egi~af~ek  255 (269)
T 1nzy_A          230 EFEIQNVIASVTH-PHFMPCLTRFLDG  255 (269)
T ss_dssp             HHHHHHHHHHHHS-TTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHHHhc
Confidence              22233344455 5666666666544

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=99.11  E-value=1.3e-11  Score=106.24  Aligned_cols=150  Identities=16%  Similarity=0.256  Sum_probs=106.9

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |+.++.+..++..+.         -|..
T Consensus        94 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~---------vG~~  164 (272)
T 1hzd_A           94 IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRA---------IGMS  164 (272)
T ss_dssp             HHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHH---------HCHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHH---------hCHH
Confidence            456677889999999999999999999999999999999999999999999 998877665433222         1776


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch------------HHHHhhhcC------HHHHHHHHhcCCCCCHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP------------AVALTRKVP------LGVVRSMTITGIPISAQ  259 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~------------~~~l~~~~g------~~~a~~~~~~g~~~~a~  259 (315)
                      .+  .+++++++.+.+.++       .++|++....            ...+.+.+.      ...+|+++..+...+.+
T Consensus       165 ~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~  235 (272)
T 1hzd_A          165 LA--KELIFSARVLDGKEA-------KAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLV  235 (272)
T ss_dssp             HH--HHHHHHTCEEEHHHH-------HHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHH
T ss_pred             HH--HHHHHcCCcCCHHHH-------HHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHH
Confidence            66  999999999999999       6667663321            112333221      23566666655444544


Q ss_pred             HHH--HcCccccccCCchHHHHHHHHHHHH
Q psy12573        260 DAY--NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       260 ~a~--~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +++  +......++.+ ++..+...+|.++
T Consensus       236 ~~l~~e~~~~~~~~~s-~d~~egi~af~ek  264 (272)
T 1hzd_A          236 TGLAIEEACYAQTIPT-KDRLEGLLAFKEK  264 (272)
T ss_dssp             HHHHHHHHHHHTTTTC-HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhCC-HHHHHHHHHHhcC
Confidence            443  23334456667 7777777777654

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=99.11  E-value=5e-10  Score=106.08  Aligned_cols=94  Identities=21%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++.+++.|++.++++.+++.| |.+..|..++ +..+.+++++++..+++||+++|.+++.++..    ++.+||
T Consensus       354 ~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~----~~~~vv  428 (549)
T 3eya_A          354 EKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARY-LKMNGKRRLLGSFNHGSMANAMPQALGAQATE----PERQVV  428 (549)
T ss_dssp             SSCBCHHHHHHHHHHHSCTTCEEEECTTHHHHHHHHH-CCCCSSCEEECCTTTCCTTCHHHHHHHHHHHS----TTSCEE
T ss_pred             CCCcCHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHh-CccCCCCcEEeCCCCchhhhHHHHHHHHHHhC----CCCcEE
Confidence            56899999999999999999999999 8888888887 77888999999989999999999999999985    788999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||.+++...+|.+..+
T Consensus       429 ~i~GDGs~~~~~~~L~ta~~  448 (549)
T 3eya_A          429 AMCGDGGFSMLMGDFLSVVQ  448 (549)
T ss_dssp             EEEEHHHHHHTGGGHHHHHH
T ss_pred             EEEccchhhccHHHHHHHHH
Confidence            99999998777666665543

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=99.11  E-value=1.7e-11  Score=105.16  Aligned_cols=147  Identities=16%  Similarity=0.262  Sum_probs=111.4

Q ss_pred             HHHHH-H--cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        122 LMLSI-L--RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       122 ~~~~~-~--~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ++..+ .  ..++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+..         |..
T Consensus        91 ~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v---------G~~  161 (265)
T 3rsi_A           91 IGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQI---------PYT  161 (265)
T ss_dssp             HHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHS---------CHH
T ss_pred             HHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHh---------CHH
Confidence            34556 6  789999999999999999999999999999999999999999 9998877665443322         777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+|+++++.+.+.++       .++|++..+.        ...+++.+   +   ....|+++..+...+.++++ 
T Consensus       162 ~a--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~  232 (265)
T 3rsi_A          162 KA--MEMILTGEPLTAFEA-------YHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWLAEEDARA  232 (265)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            77  999999999999999       7778774431        11222222   1   24667777776666666664 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +......++.+ +|..+...+|.+|
T Consensus       233 ~e~~~~~~~~~s-~d~~eg~~af~ek  257 (265)
T 3rsi_A          233 IEARLTRPVITS-ADAREGLAAFKEK  257 (265)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC-HHHHHHHHHHHcC
Confidence             33455667778 8888888888876

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=99.11  E-value=4.5e-10  Score=107.28  Aligned_cols=93  Identities=23%  Similarity=0.270  Sum_probs=81.9

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++.+++.|++.+++|.+++.| |.+..|..++ ++.+++++++++..+++||+++|.+++.++..    ++.+||
T Consensus       361 ~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~----~~~~vv  435 (590)
T 1v5e_A          361 EGDLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRH-LHMTPKNMWRTSPLFATMGIAIPGGLGAKNTY----PDRQVW  435 (590)
T ss_dssp             SSBCCHHHHHHHHHHHSCTTCEEEECSSHHHHGGGGT-CCCCTTSEEECCCSSCCTTCHHHHHHHHHHHC----TTSCEE
T ss_pred             CCCcCHHHHHHHHHhhCCCCCEEEECCchHHHHHHHh-cccCCCCeEEcCCCCCcccChHHHHHHHHHhC----CCCeEE
Confidence            56799999999999999999999999 8888898887 88889999999999999999999999999984    778999


Q ss_pred             EEEcCCCccccchhhhHHh
Q psy12573         85 CVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~  103 (315)
                      +++|||.+++...+|.+..
T Consensus       436 ~i~GDG~~~~~~~~L~ta~  454 (590)
T 1v5e_A          436 NIIGDGAFSMTYPDVVTNV  454 (590)
T ss_dssp             EEEEHHHHHHHGGGHHHHH
T ss_pred             EEEechHHhchHHHHHHHH
Confidence            9999999776666655544

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=99.11  E-value=2.5e-12  Score=110.87  Aligned_cols=152  Identities=19%  Similarity=0.280  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ..+++++..+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+..    +..+     |
T Consensus       109 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L----~r~v-----G  179 (276)
T 3rrv_A          109 RDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTW----PLHI-----S  179 (276)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHG----GGTS-----C
T ss_pred             HHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHH----HHHh-----C
Confidence            34567778899999999999999999999999999999999999999999999 999987766533    2223     7


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH-
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP------AVALTRKV---P---LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      ...+  .+++++++.+.+.++       .++|++....      ...+++.+   +   ....|+++..+...+.++++ 
T Consensus       180 ~~~A--~ellltG~~i~A~eA-------~~~GLv~~vv~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~  250 (276)
T 3rrv_A          180 LLLA--KEYALTGTRISAQRA-------VELGLANHVADDPVAEAIACAKKILELPQQAVESTKRVLNIHLERAVLASLD  250 (276)
T ss_dssp             HHHH--HHHHHHCCCEEHHHH-------HHHTSCSEEESSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHcCCCCCHHHH-------HHcCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHH
Confidence            7777  999999999999999       6667765432      11222222   1   13455555543322233332 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +......++.+ +|..+...+|.+|
T Consensus       251 ~e~~~~~~~~~s-~d~~eg~~AF~ek  275 (276)
T 3rrv_A          251 YALSAESQSFVT-EDFRSIVTKLADK  275 (276)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHHcC
Confidence             22334456666 7777777776643

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=99.11  E-value=6.5e-12  Score=108.82  Aligned_cols=151  Identities=17%  Similarity=0.108  Sum_probs=112.4

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhh-hcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT-ASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ++++..+.+.++|+|++|+|.+.|+|..++..||++++++ .++|+.|+.+ |++++.+..+...+.         -|..
T Consensus        96 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~---------vG~~  166 (287)
T 3gkb_A           96 QAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR---------VGRN  166 (287)
T ss_dssp             HHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHH---------HCHH
T ss_pred             HHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHH---------hCHH
Confidence            3456678889999999999999999999999999999999 9999999999 999887665543222         2877


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhc------CHHHHHHHHhcCCCCCHHHH--
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKV------PLGVVRSMTITGIPISAQDA--  261 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~------g~~~a~~~~~~g~~~~a~~a--  261 (315)
                      .+  .+|+++++.+.+.++       .++|++..+. . .      .+++.+      .....|+++.... .  .++  
T Consensus       167 ~A--~ellltG~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~-~--~~~l~  234 (287)
T 3gkb_A          167 RA--LEVVLTADLFDAETA-------ASYGWINRALPADELDEYVDRVARNIAALPDGVIEAAKRSLPADD-L--KEGLL  234 (287)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSCCCC-C--HHHHH
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-H--HHHHH
Confidence            77  999999999999999       7888886542 1 1      122222      1246677766542 2  233  


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCC
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENS  292 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~  292 (315)
                      .+......++.+ +|..+...+|.+|-.+.|
T Consensus       235 ~e~~~~~~~~~s-~d~~eg~~AF~ekr~~~P  264 (287)
T 3gkb_A          235 GENDAWAATFSL-PAAQQLISGGLKDGAQTP  264 (287)
T ss_dssp             HHHHHHHHHHTS-HHHHHHHHHHHHTTTTSH
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHHhcCCCCC
Confidence            344455667788 899999999988855333

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=99.10  E-value=7.7e-12  Score=108.49  Aligned_cols=147  Identities=20%  Similarity=0.220  Sum_probs=109.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh-cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ++++..+...++|+|++|+|.+.|+|..++..||++++++. ++|+.|+.+ |+.+..+..+...+.    +     |..
T Consensus        93 ~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~----v-----G~~  163 (289)
T 3h0u_A           93 GMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRL----L-----GRG  163 (289)
T ss_dssp             HHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHH----H-----CHH
T ss_pred             HHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHH----h-----CHH
Confidence            35667788999999999999999999999999999999998 999999999 999887666543222    2     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHH--
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDA--  261 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--  261 (315)
                      .+  .+|+++++.+.+.++       .++|++..+. .       ..+++.+   +   ....|+++..+.. +.+++  
T Consensus       164 ~A--~ellltG~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~~-~l~~~l~  233 (289)
T 3h0u_A          164 RA--LEAVLTSSDFDADLA-------ERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALIAAKSAINAISL-PAPAEVR  233 (289)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHS-CCHHHHH
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc-cHHHHHH
Confidence            77  999999999999999       7788885541 1       1222222   1   2355666665443 43444  


Q ss_pred             HHcCccccccCCchHHHHHHHHHHH
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTS  286 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~  286 (315)
                      .+......++.+ +|..+...+|.+
T Consensus       234 ~e~~~~~~~~~s-~d~~egi~AFle  257 (289)
T 3h0u_A          234 ADAALFQQLVRG-EKVQQRTAELFK  257 (289)
T ss_dssp             HHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHhC
Confidence            344455667788 888888888888

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=99.10  E-value=5.9e-10  Score=106.47  Aligned_cols=94  Identities=29%  Similarity=0.366  Sum_probs=82.2

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++.+++.|++.+++|.+++.| |.+..|..++ +..++++.++++..+++||+++|.+++.++..    ++.+||
T Consensus       374 ~~~l~~~~~~~~l~~~lp~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~----~~~~vv  448 (590)
T 1ybh_A          374 GEAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQF-YNYKKPRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVV  448 (590)
T ss_dssp             TTBCCHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHS-CCCSSTTSEECCCSSCCTTCHHHHHHHHHHHC----TTSCEE
T ss_pred             cCCcCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHh-cccCCCCeEEeCCCcccccchHHHHHHHHHhC----CCCcEE
Confidence            45799999999999999999999999 7777788876 88888999999999999999999999999985    678999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||.+++...+|.+..+
T Consensus       449 ~i~GDGs~~~~~~~L~ta~~  468 (590)
T 1ybh_A          449 DIDGDGSFIMNVQELATIRV  468 (590)
T ss_dssp             EEEEHHHHHHTTTHHHHHHH
T ss_pred             EEEccchhhccHHHHHHHHH
Confidence            99999998777666666544

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=99.09  E-value=1.1e-11  Score=107.15  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=81.2

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         -|..
T Consensus       110 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~---------vG~~  180 (280)
T 2f6q_A          110 LREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKI---------MSPA  180 (280)
T ss_dssp             HHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHH---------HCHH
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHH---------hCHH
Confidence            456677889999999999999999999999999999999999999999999 999887765533222         1777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       181 ~A--~~l~ltg~~~~A~eA-------~~~GLv~~v  206 (280)
T 2f6q_A          181 KA--TEMLIFGKKLTAGEA-------CAQGLVTEV  206 (280)
T ss_dssp             HH--HHHHTTCCCEEHHHH-------HHTTSCSEE
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCcceE
Confidence            76  999999999999999       777877443

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=99.08  E-value=1.8e-11  Score=105.78  Aligned_cols=141  Identities=16%  Similarity=0.260  Sum_probs=110.0

Q ss_pred             cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHh
Q psy12573        128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVA  206 (315)
Q Consensus       128 ~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l  206 (315)
                      +.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+..         |...+  .+|++
T Consensus       113 ~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v---------G~~~a--~~l~l  181 (278)
T 4f47_A          113 RLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQI---------PYTVA--CDLLL  181 (278)
T ss_dssp             CCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHS---------CHHHH--HHHHH
T ss_pred             CCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHh---------CHHHH--HHHHH
Confidence            789999999999999999999999999999999999999999 9998877665443332         77777  99999


Q ss_pred             hcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHHHhcCCCCCHHHHH--HcCccccc
Q psy12573        207 TCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSMTITGIPISAQDAY--NAGLITRV  270 (315)
Q Consensus       207 ~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~~~~g~~~~a~~a~--~~Glv~~v  270 (315)
                      +++.+.+.++       .++|++..+.        ...+++.+      .....|+++..+...+.++++  +......+
T Consensus       182 tg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~  254 (278)
T 4f47_A          182 TGRHITAAEA-------KEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIEV  254 (278)
T ss_dssp             HCCCEEHHHH-------HHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGG
T ss_pred             cCCcCCHHHH-------HHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            9999999999       7777774431        11222222      224678888888777777764  34566677


Q ss_pred             cCCchHHHHHHHHHHHH
Q psy12573        271 VSSNEELESETKVLTSA  287 (315)
Q Consensus       271 ~~~~~~~~~~~~~~~~~  287 (315)
                      +.+ +|..+...+|.+|
T Consensus       255 ~~s-~d~~eg~~Af~ek  270 (278)
T 4f47_A          255 FLS-DDAKEGPQAFAQK  270 (278)
T ss_dssp             GGS-SHHHHHHHHHHTT
T ss_pred             hcC-HHHHHHHHHHhcC
Confidence            788 8999999988865

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=99.08  E-value=1.2e-11  Score=105.22  Aligned_cols=95  Identities=16%  Similarity=0.251  Sum_probs=81.1

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+.. ...+.         .|..
T Consensus        83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~---------vG~~  152 (250)
T 2a7k_A           83 VIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFT---------HGFS  152 (250)
T ss_dssp             HHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHH---------HCHH
T ss_pred             HHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHH---------hHHH
Confidence            456677889999999999999999999999999999999999999999999 999887765 33222         2766


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       153 ~a--~~l~ltg~~~~a~eA-------~~~GLv~~v  178 (250)
T 2a7k_A          153 TM--QEIIYQCQSLDAPRC-------VDYRLVNQV  178 (250)
T ss_dssp             HH--HHHHHHCCCBCHHHH-------HHHTCCSEE
T ss_pred             HH--HHHHHcCCcccHHHH-------HHcCCccee
Confidence            66  999999999999999       788888654

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=99.06  E-value=3.6e-11  Score=107.66  Aligned_cols=93  Identities=20%  Similarity=0.165  Sum_probs=78.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+.+.++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |++++.+..+.. .++        .|. .
T Consensus        92 ~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L-~r~--------~g~-~  161 (363)
T 3bpt_A           92 YMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFL-PRL--------QGK-L  161 (363)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHH-HHS--------STT-H
T ss_pred             HHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHH-HHh--------hHH-H
Confidence            45667789999999999999999999999999999999999999999999 999988776543 232        265 4


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCS  231 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~  231 (315)
                      +  .+|+++++.+.+.++       .++|++..
T Consensus       162 a--~~l~ltg~~i~A~eA-------~~~GLv~~  185 (363)
T 3bpt_A          162 G--YFLALTGFRLKGRDV-------YRAGIATH  185 (363)
T ss_dssp             H--HHHHHHCCCEETHHH-------HHTTSCSE
T ss_pred             H--HHHHHcCCCCCHHHH-------HHCCCcce
Confidence            4  999999999999999       66777643

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=99.06  E-value=1.2e-11  Score=106.19  Aligned_cols=97  Identities=23%  Similarity=0.303  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      .+++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..++..+    .+     |.
T Consensus        92 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r----~v-----G~  162 (264)
T 1wz8_A           92 EARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPL----LV-----GM  162 (264)
T ss_dssp             HHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHH----HH-----CH
T ss_pred             HHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHH----Hh-----CH
Confidence            3456677889999999999999999999999999999999999999999999 99887766543222    22     77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+|+++++.+.+.++       .++|++...
T Consensus       163 ~~a--~~l~ltg~~~~a~eA-------~~~GLv~~v  189 (264)
T 1wz8_A          163 AKA--KYHLLLNEPLTGEEA-------ERLGLVALA  189 (264)
T ss_dssp             HHH--HHHHHHTCCEEHHHH-------HHHTSSSEE
T ss_pred             HHH--HHHHHcCCCCCHHHH-------HHCCCceee
Confidence            776  999999999999999       777877544

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=99.06  E-value=1.1e-11  Score=109.41  Aligned_cols=150  Identities=12%  Similarity=0.099  Sum_probs=88.7

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh-hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      .+++..+...++|+|++|+|.+.|+|..++..||+++++ +.++|+.|+.+ |+++..+......+         .-|..
T Consensus       157 ~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~gg~~~L~r---------~vG~~  227 (334)
T 3t8b_A          157 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLAR---------QVGQK  227 (334)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCSCHHHHHH---------HHHHH
T ss_pred             HHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCcccHHHHHHH---------HhhHH
Confidence            456667889999999999999999999999999999999 99999999999 98876554432221         11777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCC-CCHHHHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIP-ISAQDAY  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~-~~a~~a~  262 (315)
                      .+  .+|+++++.+.|.++       .++|++..+.        ...+++.+   +   ....|+++..+.. .......
T Consensus       228 ~A--~ellltG~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~  298 (334)
T 3t8b_A          228 FA--REIFFLGRTYTAEQM-------HQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDDGLVGQQLF  298 (334)
T ss_dssp             HH--HHHHHHCCEEEHHHH-------HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCCCC------
T ss_pred             HH--HHHHHhCCcCCHHHH-------HHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcchHHHHHH
Confidence            77  999999999999999       7778775431        11233322   1   2466777765543 2112223


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                      +......++.+ +|..|...+|.+|-
T Consensus       299 e~~~~~~~~~s-~d~~Eg~~AFleKR  323 (334)
T 3t8b_A          299 AGEATRLAYMT-DEAVEGRDAFLQKR  323 (334)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHhcC-HHHHHHHHHHHcCC
Confidence            33344556677 88889998888764

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=99.06  E-value=1.7e-11  Score=104.79  Aligned_cols=146  Identities=18%  Similarity=0.246  Sum_probs=102.4

Q ss_pred             HHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhh
Q psy12573        123 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAG  201 (315)
Q Consensus       123 ~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G  201 (315)
                      +..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         .|...+  
T Consensus        88 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~---------vG~~~a--  156 (258)
T 2pbp_A           88 WDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKL---------IGPKRA--  156 (258)
T ss_dssp             HHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHH---------HCHHHH--
T ss_pred             HHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHH---------hCHHHH--
Confidence            45678899999999999999999999999999999999999999999 998877665533222         177666  


Q ss_pred             hHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcC
Q psy12573        202 CQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAG  265 (315)
Q Consensus       202 ~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~G  265 (315)
                      .+++++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++..+...+.++++  +..
T Consensus       157 ~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~  229 (258)
T 2pbp_A          157 LEWLWTGARMSAKEA-------EQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERK  229 (258)
T ss_dssp             HHHHHHCCCEEHHHH-------HHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHcCCccCHHHH-------HHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            999999999999999       7788875441        11122221   1   23456665544444444442  223


Q ss_pred             ccccccCCchHHHHHHHHHHHH
Q psy12573        266 LITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       266 lv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ....++.+ ++..+...+|.++
T Consensus       230 ~~~~~~~s-~d~~eg~~af~ek  250 (258)
T 2pbp_A          230 NFYLLFAS-EDQKEGMAAFLEK  250 (258)
T ss_dssp             HHHHHTTS-HHHHHHHHHHHTT
T ss_pred             HHHHHhCC-HHHHHHHHHHHcc
Confidence            34455566 6666776666654

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=99.05  E-value=9.4e-12  Score=106.36  Aligned_cols=95  Identities=24%  Similarity=0.320  Sum_probs=80.5

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         -|...
T Consensus        84 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~---------vG~~~  154 (257)
T 2ej5_A           84 APMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRL---------VGRAK  154 (257)
T ss_dssp             HHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHH---------HCHHH
T ss_pred             HHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHH---------hCHHH
Confidence            45567788999999999999999999999999999999999999999999 998887765533222         17777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+++++++.+.+.++       .++|++...
T Consensus       155 a--~~l~ltg~~~~a~eA-------~~~GLv~~v  179 (257)
T 2ej5_A          155 A--LELAVLGEKVTAEEA-------AALGLATKV  179 (257)
T ss_dssp             H--HHHHHHCCCEEHHHH-------HHHTCCSEE
T ss_pred             H--HHHHHhCCccCHHHH-------HHcCCccee
Confidence            6  999999999999999       778887554

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=99.05  E-value=1.2e-11  Score=112.06  Aligned_cols=98  Identities=18%  Similarity=0.118  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        114 EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                      .++...++++..+..+++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ |++++.+..+.    +++.+   
T Consensus       126 ~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~----L~rl~---  198 (407)
T 3ju1_A          126 VFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYF----LNRMP---  198 (407)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHH----TTTSS---
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHH----Hhhhh---
Confidence            34455567788899999999999999999999999999999999999999999999 99998877652    33322   


Q ss_pred             EccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCC
Q psy12573        193 ISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFC  230 (315)
Q Consensus       193 v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~  230 (315)
                        | ..+  .+|+++++.+.+.++       .++|++.
T Consensus       199 --g-~~A--~~l~ltG~~i~A~eA-------~~~GLv~  224 (407)
T 3ju1_A          199 --G-KMG--LFLGLTAYHMNAADA-------CYVGLAD  224 (407)
T ss_dssp             --T-THH--HHHHHHCCCBCHHHH-------HHHTSCS
T ss_pred             --H-HHH--HHHHHcCCcCcHHHH-------HHCCCcc
Confidence              6 555  999999999999999       5666653

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=99.05  E-value=1.1e-09  Score=105.98  Aligned_cols=94  Identities=22%  Similarity=0.317  Sum_probs=81.4

Q ss_pred             CCCCCHHHHHHHHHhhC---CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCC
Q psy12573          6 SVPLNYYAAIHAVQVSI---PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK   81 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~---~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~   81 (315)
                      ..+++++.+++.|++.+   +++.+++++ |.+.+|.+++ +..+.++.++++..+++||+++|.+++.++..    ++.
T Consensus       458 ~~~l~~~~v~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~-~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~----p~~  532 (677)
T 1t9b_A          458 GSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQH-WTWRNPHTFITSGGLGTMGYGLPAAIGAQVAK----PES  532 (677)
T ss_dssp             TCCBCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHH-SCCCSTTCEECCCSSCCTTCHHHHHHHHHHHC----TTS
T ss_pred             CCCcCHHHHHHHHHHHhhcCCCCEEEEeCCchHHHHHHHh-cccCCCCeEEeCCCcchhhchHHHHHHHHHhC----CCC
Confidence            45799999999999998   677888888 7778898887 88889999999999999999999999999985    788


Q ss_pred             eEEEEEcCCCccccchhhhHHhh
Q psy12573         82 RVVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        82 ~vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +||+|+|||.+++...+|.++.+
T Consensus       533 ~Vv~i~GDGsf~~~~~eL~ta~~  555 (677)
T 1t9b_A          533 LVIDIDGDASFNMTLTELSSAVQ  555 (677)
T ss_dssp             EEEEEEEHHHHHHHGGGHHHHHH
T ss_pred             eEEEEEeehHHhccHHHHHHHHH
Confidence            99999999998777666666543

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=99.05  E-value=9.9e-12  Score=107.02  Aligned_cols=150  Identities=15%  Similarity=0.204  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ..+++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.++.+..++.    ++.+     |
T Consensus        94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L----~r~v-----G  164 (272)
T 3qk8_A           94 REARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICW----PLLV-----G  164 (272)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHT----HHHH-----C
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHH----HHHh-----C
Confidence            34557778899999999999999999999999999999999999999999999 998877665432    2222     8


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCC---CCH
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIP---ISA  258 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~---~~a  258 (315)
                      ...+  .+|+++++.+.+.++       .++|++..+.        ...+++.+   +   ....|+++.....   .+.
T Consensus       165 ~~~A--~~l~ltg~~~~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~  235 (272)
T 3qk8_A          165 MAKA--KYYLLTCETLSGEEA-------ERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNHWYRMFGPTF  235 (272)
T ss_dssp             HHHH--HHHHHHCCCEEHHHH-------HHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHH--HHHHHcCCCCCHHHH-------HHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcchhH
Confidence            7777  999999999999999       7778775441        11122222   1   1345665543211   111


Q ss_pred             HHHHHcCccccccCCchHHHHHHHHHHHH
Q psy12573        259 QDAYNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       259 ~~a~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ++.++.-  ..++.+ +|..+...+|.+|
T Consensus       236 ~~~~~~e--~~~~~s-~d~~eg~~Af~ek  261 (272)
T 3qk8_A          236 ETSLGLE--FLGFTG-PDVQEGLAAHRQK  261 (272)
T ss_dssp             HHHHHHH--HHHTTS-SHHHHHHHHHHTT
T ss_pred             HHHHHHH--HHHhCC-HHHHHHHHHHHcC
Confidence            1222211  245667 7888888888765

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=99.04  E-value=1.3e-11  Score=105.80  Aligned_cols=147  Identities=16%  Similarity=0.126  Sum_probs=105.1

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+ ....    +..+     |...
T Consensus        90 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l----~r~v-----G~~~  159 (267)
T 3hp0_A           90 YDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFL----IRRI-----GRQK  159 (267)
T ss_dssp             HHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHH----HHHH-----CHHH
T ss_pred             HHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHH----HHHh-----CHHH
Confidence            45667788999999999999999999999999999999999999999999 9988764 3222    1222     8888


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHH--HHc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP------AVALTRKV---P---LGVVRSMTITGIPISAQDA--YNA  264 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~~~  264 (315)
                      +  .+|+++++.+.+.++       .++|++..+.      ...+.+.+   +   ....|+++...... .+++  .+.
T Consensus       160 A--~ellltg~~i~A~eA-------~~~GLV~~vv~~~~~~~~~~a~~la~~~p~a~~~~K~~l~~~~~~-~~~~~~~e~  229 (267)
T 3hp0_A          160 A--HYMTLMTKPISVQEA-------SEWGLIDAFDAESDVLLRKHLLRLRRLNKKGIAHYKQFMSSLDHQ-VSRAKATAL  229 (267)
T ss_dssp             H--HHHHHHCCCBCHHHH-------HHHTSSSCBCSCTTHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCH-HHHHHHHHH
T ss_pred             H--HHHHHcCCCCCHHHH-------HHCCCcceecCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcccc-hHHHHHHHH
Confidence            7  999999999999999       6666664431      11222222   1   13566666554322 2222  233


Q ss_pred             CccccccCCchHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .....++.+ +|..|...+|.+|
T Consensus       230 ~~~~~~~~s-~d~~Eg~~AF~ek  251 (267)
T 3hp0_A          230 TANQDMFSD-PQNQMGIIRYVET  251 (267)
T ss_dssp             HHHHHHTTS-TTHHHHHHHHTTS
T ss_pred             HHHHHHhCC-HHHHHHHHHHHhc
Confidence            345566777 8888888888776

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=99.04  E-value=1.6e-11  Score=105.00  Aligned_cols=96  Identities=19%  Similarity=0.177  Sum_probs=81.3

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh--hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT--TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      +++++..+.+.++|+|++|||.+.|+|..++..||+++++  +.++|+.|+.+ ++.+..+..+...+..         |
T Consensus        86 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v---------G  156 (260)
T 1sg4_A           86 VQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTI---------G  156 (260)
T ss_dssp             HHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHH---------C
T ss_pred             HHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHh---------C
Confidence            4466778899999999999999999999999999999999  89999999999 9998877665433222         7


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ...+  .+++++++.+.+.++       .++|++...
T Consensus       157 ~~~a--~~llltg~~~~a~eA-------~~~GLv~~v  184 (260)
T 1sg4_A          157 HRAA--ERALQLGLLFPPAEA-------LQVGIVDQV  184 (260)
T ss_dssp             HHHH--HHHHHHTCCBCHHHH-------HHHTSSSEE
T ss_pred             HHHH--HHHHHcCCcCCHHHH-------HHcCCCCEe
Confidence            7666  999999999999999       777887554

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=99.04  E-value=1.2e-11  Score=105.90  Aligned_cols=95  Identities=21%  Similarity=0.283  Sum_probs=82.1

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+    .++.-+     |...
T Consensus        86 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~----~l~r~v-----G~~~  156 (261)
T 1ef8_A           86 RQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIH----NLTRDA-----GFHI  156 (261)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHH----TTSSSS-----CHHH
T ss_pred             HHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHH----HHHHHh-----CHHH
Confidence            35566788899999999999999999999999999999999999999999 9998887654    344444     7777


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +  .+++++++.+.+.++       .++|++...
T Consensus       157 a--~~l~ltg~~~~a~eA-------~~~GLv~~v  181 (261)
T 1ef8_A          157 V--KELIFTASPITAQRA-------LAVGILNHV  181 (261)
T ss_dssp             H--HHHHHHCCCEEHHHH-------HHTTSCSEE
T ss_pred             H--HHHHHcCCccCHHHH-------HHCCCcccc
Confidence            7  999999999999999       888888654

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=99.04  E-value=7.8e-11  Score=101.47  Aligned_cols=125  Identities=20%  Similarity=0.198  Sum_probs=95.1

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ ++++..+..+...+..         |..
T Consensus       104 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~v---------G~~  174 (277)
T 4di1_A          104 RLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVV---------GSS  174 (277)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHH---------CHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHh---------CHH
Confidence            456777888999999999999999999999999999999999999999999 9988877655432222         777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhcC------HHHHHHHHhcCCCCCHHHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKVP------LGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~g------~~~a~~~~~~g~~~~a~~a  261 (315)
                      .+  .+|+++++.+.+.++       .++|++..+.        ...+++.+.      ....|+++..+...+.+++
T Consensus       175 ~A--~~llltG~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~  243 (277)
T 4di1_A          175 RA--KELVFSGRFFDAEEA-------LALGLIDDMVAPDDVYDSAVAWARRYLECPPRALAAAKAVINDVFELEATER  243 (277)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHHHHHHHHHHTTTSCHHHH
T ss_pred             HH--HHHHHcCCCCCHHHH-------HHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHH
Confidence            77  999999999999999       7778875441        112333332      2356666666655555554

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=99.04  E-value=2.5e-11  Score=104.69  Aligned_cols=144  Identities=19%  Similarity=0.265  Sum_probs=108.2

Q ss_pred             HHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhh
Q psy12573        124 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGC  202 (315)
Q Consensus       124 ~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~  202 (315)
                      ..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+ .+..+..    ++-+     |...+  .
T Consensus       104 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L----~r~v-----G~~~A--~  171 (274)
T 3tlf_A          104 PPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRV----SRVL-----PRSIA--L  171 (274)
T ss_dssp             CCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHH----TTTS-----CHHHH--H
T ss_pred             HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHH----HHHh-----CHHHH--H
Confidence            4467799999999999999999999999999999999999999999 9998 6655433    3323     77777  9


Q ss_pred             HHHhhcC--eeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHHHhcCCCCCHHHHH--Hc
Q psy12573        203 QLVATCD--LAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSMTITGIPISAQDAY--NA  264 (315)
Q Consensus       203 ~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~~~~g~~~~a~~a~--~~  264 (315)
                      +|+++++  .+.+.++       .++|++..+.        ...+++.+      .....|+++..+...+.++++  +.
T Consensus       172 ~l~ltg~~~~~~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~  244 (274)
T 3tlf_A          172 RMALMGKHERMSAQRA-------YELGLISEIVEHDRLLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAE  244 (274)
T ss_dssp             HHHHHGGGCCEEHHHH-------HHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHH-------HHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999  9999999       7778775431        11222222      124667777776666666654  33


Q ss_pred             CccccccCCchHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .....++.+ +|..+...+|.+|
T Consensus       245 ~~~~~~~~s-~d~~eg~~af~ek  266 (274)
T 3tlf_A          245 TFRERVLRT-EDAAEGPRAFVEK  266 (274)
T ss_dssp             HHHHHHHTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHhcC-HHHHHHHHHHhcC
Confidence            455667778 8888888888765

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=99.03  E-value=1.5e-09  Score=103.88  Aligned_cols=93  Identities=27%  Similarity=0.390  Sum_probs=81.2

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      .+.+++|+.+++.|.+.++++++++.| |+++.|..++ ++.+.++.++++..+++||+++|.+++.++..    ++.++
T Consensus       367 ~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~----~~~~v  441 (603)
T 4feg_A          367 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRH-LKLTPSNRHITSNLFATMGVGIPGAIAAKLNY----PERQV  441 (603)
T ss_dssp             CSSBCCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHH-CCCCTTCEEECCCSSCCTTCHHHHHHHHHHHC----TTSCE
T ss_pred             CCCCcCHHHHHHHHHHhCCCCCEEEECCchHHHHHHHh-ceeCCCCceecCcccccccchhHHHhhHHHhC----CCCcE
Confidence            457899999999999999999999999 8888888887 88888999999999999999999999999984    77899


Q ss_pred             EEEEcCCCccccchhhhHH
Q psy12573         84 VCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~  102 (315)
                      |+++|||.+++...+|.+.
T Consensus       442 v~~~GDG~~~~~~~~l~~a  460 (603)
T 4feg_A          442 FNLAGDGGASMTMQDLATQ  460 (603)
T ss_dssp             EEEEEHHHHHHHGGGHHHH
T ss_pred             EEEeccHHHhhhHHHHHHH
Confidence            9999999866555555444

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=99.03  E-value=1.2e-09  Score=103.87  Aligned_cols=94  Identities=31%  Similarity=0.349  Sum_probs=81.9

Q ss_pred             CCC-CCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          6 SVP-LNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         6 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      +.+ ++++.+++.|.+.+++|.+++.| |.+..|..++ +..+++.+++++..+++||+++|.+++.++..    ++.++
T Consensus       367 ~~~~l~~~~v~~~l~~~l~~~~iv~~d~G~~~~~~~~~-~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~----~~~~v  441 (566)
T 1ozh_A          367 NQFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARY-LYTFRARQVMISNGQQTMGVALPWAIGAWLVN----PERKV  441 (566)
T ss_dssp             CCSSBCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHHT-GGGCCCSEEECCCTTCCTTCHHHHHHHHHHHS----TTSEE
T ss_pred             CCCCcCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHh-cccCCCCeEEeCCCcccccchHHHHHHHHHhC----CCCCE
Confidence            456 99999999999999999999999 7777888887 88888999999999999999999999999985    67899


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+++|||.+++...+|.+..+
T Consensus       442 v~i~GDG~~~~~~~~L~ta~~  462 (566)
T 1ozh_A          442 VSVSGDGGFLQSSMELETAVR  462 (566)
T ss_dssp             EEEEEHHHHHHHTTHHHHHHH
T ss_pred             EEEEcChHHhccHHHHHHHHH
Confidence            999999998776666665543

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=99.03  E-value=9.3e-10  Score=104.62  Aligned_cols=94  Identities=48%  Similarity=0.864  Sum_probs=80.7

Q ss_pred             CCCCCHHHHHHHHHhhC--CCCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          6 SVPLNYYAAIHAVQVSI--PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      +.|++++.+++.|++.+  |+|.+++.||++.+|+++..+....|++.+++..+++||+++|.+++.++.     ++.++
T Consensus       367 ~~~~~~~~~~~~l~~~l~~~~d~ivv~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-----~~~~v  441 (564)
T 2q28_A          367 TQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-----SGSPV  441 (564)
T ss_dssp             CSSBCHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-----HCSCE
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-----CCCcE
Confidence            56899999999999999  889888888888888777656777788889999999999999999999996     56789


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+++|||.+++...++.+..+
T Consensus       442 v~i~GDGsf~~~~~el~ta~~  462 (564)
T 2q28_A          442 VAIEGDSAFGFSGMEIETICR  462 (564)
T ss_dssp             EEEEEHHHHHTTGGGHHHHHH
T ss_pred             EEEEcchHhhccHHHHHHHHH
Confidence            999999998877777766543

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=99.02  E-value=1.1e-09  Score=104.59  Aligned_cols=94  Identities=26%  Similarity=0.341  Sum_probs=82.9

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++.+++.|++.+++|.+++.| |.+..|..+. +..+++.+++++..+++||+++|.+++.++..    ++.++|
T Consensus       372 ~~~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~----~~~~vv  446 (589)
T 2pgn_A          372 GMPASMFRAMAEVRKVQRPEDIIVTDIGNHTLPMFGG-AILQRPRRLVTSMAEGILGCGFPMALGAQLAE----PNSRVF  446 (589)
T ss_dssp             CSSCCHHHHHHHHHHTCCTTCEEEECSSTTHHHHHHH-CCCSSTTCEESCTTTCCTTCHHHHHHHHHHHC----TTSCEE
T ss_pred             CCCcCHHHHHHHHHHhCCCCCEEEEcCchHHHHHHHh-cccCCCCcEECCCCcchhhhHHHHHHHHHHhC----CCCcEE
Confidence            46899999999999999999999999 8888898887 88889999999988999999999999999984    678999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||.+++....|.+..+
T Consensus       447 ~i~GDG~~~~~~~~L~ta~~  466 (589)
T 2pgn_A          447 LGTGDGALYYHFNEFRVAVE  466 (589)
T ss_dssp             EEEEHHHHHHHGGGHHHHHH
T ss_pred             EEEeeHHHHhhHHHHHHHHH
Confidence            99999997776666666543

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=99.02  E-value=8.6e-10  Score=104.91  Aligned_cols=94  Identities=47%  Similarity=0.742  Sum_probs=81.0

Q ss_pred             CCCCCHHHHHHHHHhhC--CCCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          6 SVPLNYYAAIHAVQVSI--PDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      +.+++++.+++.|++.+  ++|.+++.||++.+|+++..+....|++.+++..+++||+++|.+++.++.     ++.++
T Consensus       372 ~~~~~~~~~~~~l~~~l~~~~~~iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-----~~~~v  446 (568)
T 2c31_A          372 SGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-----TGKPV  446 (568)
T ss_dssp             TTCBCHHHHHHHHHHHHHHCCSSEEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-----HCSCE
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCeEEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-----CCCcE
Confidence            46899999999999999  999888888888888777556777888899999999999999999999996     56789


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+++|||.++++..+|.+..+
T Consensus       447 v~i~GDGsf~~~~~el~ta~~  467 (568)
T 2c31_A          447 IAVEGDSAFGFSGMELETICR  467 (568)
T ss_dssp             EEEEEHHHHHTTGGGHHHHHH
T ss_pred             EEEEcchHhhccHHHHHHHHH
Confidence            999999998887777766643

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=99.02  E-value=4.6e-11  Score=101.89  Aligned_cols=141  Identities=25%  Similarity=0.370  Sum_probs=106.8

Q ss_pred             cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHh
Q psy12573        128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVA  206 (315)
Q Consensus       128 ~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l  206 (315)
                      ..++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+.+         |...+  .+|++
T Consensus        91 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v---------G~~~a--~~l~l  159 (256)
T 3trr_A           91 PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRI---------PYQVA--MELAL  159 (256)
T ss_dssp             CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHS---------CHHHH--HHHHH
T ss_pred             cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHh---------CHHHH--HHHHH
Confidence            578999999999999999999999999999999999999999 9988877665443322         77777  99999


Q ss_pred             hcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCccccc
Q psy12573        207 TCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLITRV  270 (315)
Q Consensus       207 ~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv~~v  270 (315)
                      +++.+.+.++       .++|++..+.        ...+.+.+   +   ....|+++..+...+.++++  +......+
T Consensus       160 tg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~  232 (256)
T 3trr_A          160 TGESFTAEDA-------AKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPI  232 (256)
T ss_dssp             HCCCEEHHHH-------GGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred             hCCCcCHHHH-------HHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence            9999999999       7778774431        11222222   1   24667777777666666653  34455667


Q ss_pred             cCCchHHHHHHHHHHHH
Q psy12573        271 VSSNEELESETKVLTSA  287 (315)
Q Consensus       271 ~~~~~~~~~~~~~~~~~  287 (315)
                      +.+ +|..+...+|.+|
T Consensus       233 ~~s-~d~~eg~~af~ek  248 (256)
T 3trr_A          233 FVS-EDAKEGAKAFAEK  248 (256)
T ss_dssp             HTS-HHHHHHHHHHHTT
T ss_pred             hCC-HHHHHHHHHHhcC
Confidence            778 8888888888764

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=99.02  E-value=1.7e-09  Score=103.83  Aligned_cols=94  Identities=23%  Similarity=0.294  Sum_probs=81.9

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++.+++.|++.++++.+++.| |.+.+|.++. +..++++.++++..+++||+++|.+++.++..    ++.+||
T Consensus       390 ~~~~~~~~~~~~L~~~l~~~~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~----~~~~vv  464 (616)
T 2pan_A          390 NVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQM-LHVFKDRHWINCGQAGPLGWTIPAALGVCAAD----PKRNVV  464 (616)
T ss_dssp             CSSBCHHHHHHHHHHHSCTTEEEEECSSHHHHHHHHH-CCCCSTTSEEECTTTCCTTCHHHHHHHHHHHC----TTCEEE
T ss_pred             CCCcCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHh-cccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEE
Confidence            45799999999999999999999999 7778888876 78888899999999999999999999999985    678999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      ++.|||.+++....|.+..+
T Consensus       465 ~i~GDGs~~~~~~~L~ta~~  484 (616)
T 2pan_A          465 AISGDFDFQFLIEELAVGAQ  484 (616)
T ss_dssp             EEEEHHHHHHTGGGHHHHHH
T ss_pred             EEEcchhhhCCHHHHHHHHH
Confidence            99999998776666665543

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=99.00  E-value=1.9e-11  Score=105.39  Aligned_cols=94  Identities=24%  Similarity=0.269  Sum_probs=77.8

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         -|...+
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~---------vG~~~A  168 (273)
T 2uzf_A           98 DLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARI---------VGHKKA  168 (273)
T ss_dssp             HHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHH---------HCHHHH
T ss_pred             HHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHH---------hCHHHH
Confidence            3445677899999999999999999999999999999999999999999 998876654432221         277777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        .+|+++++.+.+.++       .++|++...
T Consensus       169 --~~l~ltg~~~~a~eA-------~~~GLv~~v  192 (273)
T 2uzf_A          169 --REIWYLCRQYNAQEA-------LDMGLVNTV  192 (273)
T ss_dssp             --HHHHHTCCCEEHHHH-------HHHTSSSEE
T ss_pred             --HHHHHhCCCCCHHHH-------HHcCCCccc
Confidence              999999999999999       777777543

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=98.99  E-value=4e-11  Score=103.46  Aligned_cols=147  Identities=15%  Similarity=0.130  Sum_probs=94.9

Q ss_pred             HHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhh
Q psy12573        123 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAG  201 (315)
Q Consensus       123 ~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G  201 (315)
                      +..+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+..         |...+  
T Consensus        99 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v---------G~~~A--  167 (276)
T 2j5i_A           99 WKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTV---------GHRQS--  167 (276)
T ss_dssp             TTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHS---------CHHHH--
T ss_pred             HHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHh---------CHHHH--
Confidence            45677899999999999999999999999999999999999999999 9998877665433322         77766  


Q ss_pred             hHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHc--C
Q psy12573        202 CQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV---P---LGVVRSMTITGIPISAQDAYNA--G  265 (315)
Q Consensus       202 ~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~--G  265 (315)
                      .+|+++++.+.+.++       .++|++..+. .       ..+.+.+   +   ....|+++..+...+.+++++.  .
T Consensus       168 ~~l~ltg~~~~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~  240 (276)
T 2j5i_A          168 LMYIMTGKTFGGQKA-------AEMGLVNESVPLAQLREVTIELARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYA  240 (276)
T ss_dssp             HHHHHHCCEEEHHHH-------HHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHhCCcccHHHH-------HHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            999999999999999       7888886541 1       1222221   1   2356777766655555555332  1


Q ss_pred             ccccc--cCCch-HHHHHHHHHHHHH
Q psy12573        266 LITRV--VSSNE-ELESETKVLTSAI  288 (315)
Q Consensus       266 lv~~v--~~~~~-~~~~~~~~~~~~l  288 (315)
                      ....+  +.+ + |..+...+|.++-
T Consensus       241 ~~~~~~~~~s-~~d~~eg~~AF~ekr  265 (276)
T 2j5i_A          241 KLDQSRLLDT-EGGREQGMKQFLDDK  265 (276)
T ss_dssp             HHHHHHHHC-----------------
T ss_pred             HHHHHhhcCC-hHHHHHHHHHHHhcc
Confidence            22222  345 5 6777777777664

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=98.99  E-value=1.6e-10  Score=101.00  Aligned_cols=88  Identities=17%  Similarity=0.169  Sum_probs=75.3

Q ss_pred             HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      ...++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ |++++.+..+..    +.-+     |...+  .+|+
T Consensus       137 ~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L----~r~v-----G~~~A--~~ll  205 (305)
T 3m6n_A          137 LGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFM----CQRI-----SAHLA--QKIM  205 (305)
T ss_dssp             GGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHH----TTTS-----CHHHH--HHHH
T ss_pred             cCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHH----HHHh-----cHHHH--HHHH
Confidence            4689999999999999999999999999999999999999999 999888766533    2222     77777  9999


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ++++.+.+.++       .++|++..+
T Consensus       206 ltG~~i~A~eA-------~~~GLv~~v  225 (305)
T 3m6n_A          206 LEGNLYSAEQL-------LGMGLVDRV  225 (305)
T ss_dssp             HHCCEEEHHHH-------HHHTSCSEE
T ss_pred             HcCCCCCHHHH-------HHCCCCCEe
Confidence            99999999999       777777443

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=98.99  E-value=3.9e-11  Score=102.96  Aligned_cols=141  Identities=17%  Similarity=0.278  Sum_probs=105.2

Q ss_pred             cCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHh
Q psy12573        128 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVA  206 (315)
Q Consensus       128 ~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l  206 (315)
                      ..++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.++.+..+...+..         |...+  .+|++
T Consensus        99 ~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v---------G~~~A--~~l~l  167 (267)
T 3r9t_A           99 FIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQL---------PRKVA--MRLLL  167 (267)
T ss_dssp             CCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHS---------CHHHH--HHHHH
T ss_pred             hCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHc---------CHHHH--HHHHH
Confidence            689999999999999999999999999999999999999999 9999887765443332         77777  99999


Q ss_pred             hcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc------CHHHHHHH---HhcCCCCCHHHHH--HcCcc
Q psy12573        207 TCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV------PLGVVRSM---TITGIPISAQDAY--NAGLI  267 (315)
Q Consensus       207 ~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~------g~~~a~~~---~~~g~~~~a~~a~--~~Glv  267 (315)
                      +++.+.+.++       .++|++..+.        ...+++.+      .....|++   +..+...+.++++  +....
T Consensus       168 tg~~i~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~  240 (267)
T 3r9t_A          168 TGEPLSAAAA-------RDWGLINEVVEAGSVLDAALALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREM  240 (267)
T ss_dssp             HCCCEEHHHH-------HHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHHHHH
T ss_pred             cCCCCCHHHH-------HHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            9999999999       7777774431        11233322      12466777   6555444445543  33455


Q ss_pred             ccccCCchHHHHHHHHHHHH
Q psy12573        268 TRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ..++.+ +|..+...+|.+|
T Consensus       241 ~~~~~s-~d~~eg~~AF~ek  259 (267)
T 3r9t_A          241 RALLKS-EDAKEGPRAFAEK  259 (267)
T ss_dssp             HHHTTS-SHHHHHHHHHHTT
T ss_pred             HHHhCC-HHHHHHHHHHHcC
Confidence            667777 8888888888765

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=98.98  E-value=3.9e-09  Score=99.53  Aligned_cols=93  Identities=24%  Similarity=0.269  Sum_probs=80.9

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++++++.|++.+|+|.+++.| |.+..|..++ +..+++.+++.+.. ++||+++|.+++.++..    ++.+||
T Consensus       350 ~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~----~~~~vv  423 (528)
T 1q6z_A          350 AGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQR-LNMRNPGSYYFCAA-GGLGFALPAAIGVQLAE----PERQVI  423 (528)
T ss_dssp             SSSBCHHHHHHHHHHHSCTTCEEEEECTTSHHHHHHH-CCCCSSSCEEECTT-CCTTSHHHHHHHHHHHC----TTSCEE
T ss_pred             CCCcCHHHHHHHHHhhCCCCeEEEECCcccHHHHHHh-ccccCCCcEECCCC-ccccchHHHHHHHHHhC----CCCcEE
Confidence            45799999999999999999999999 8888888887 77777888998888 99999999999999984    677999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||.+++...+|.+..+
T Consensus       424 ~~~GDG~~~~~~~~l~~a~~  443 (528)
T 1q6z_A          424 AVIGDGSANYSISALWTAAQ  443 (528)
T ss_dssp             EEEEHHHHTTTGGGHHHHHH
T ss_pred             EEECCcHHHhhHHHHHHHHH
Confidence            99999998877777766554

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=98.98  E-value=1.2e-11  Score=106.03  Aligned_cols=144  Identities=16%  Similarity=0.221  Sum_probs=101.5

Q ss_pred             HHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhH
Q psy12573        125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQ  203 (315)
Q Consensus       125 ~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~  203 (315)
                      .+...++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+...    ..+     |...+  .+
T Consensus        93 ~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~----r~v-----G~~~A--~~  161 (265)
T 3qxz_A           93 AAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLP----RLV-----GTAVA--AE  161 (265)
T ss_dssp             CGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTH----HHH-----HHHHH--HH
T ss_pred             HHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHH----HHh-----CHHHH--HH
Confidence            356789999999999999999999999999999999999999999 9988777654322    222     77777  99


Q ss_pred             HHhhcCeeeeeCCceeeCCCccCCCCCCch-H-------HHHhhhc----C---HHHHHHHHhcCCC--CCHH--HHHHc
Q psy12573        204 LVATCDLAIATTASKFSTPGARHGIFCSTP-A-------VALTRKV----P---LGVVRSMTITGIP--ISAQ--DAYNA  264 (315)
Q Consensus       204 l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-------~~l~~~~----g---~~~a~~~~~~g~~--~~a~--~a~~~  264 (315)
                      ++++++.+.+.++       .++|++..+. .       ..+++.+    +   ...+|+++..+..  +...  -..+.
T Consensus       162 l~ltg~~~~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~l~~e~  234 (265)
T 3qxz_A          162 LLLTGASFSAQRA-------VETGLANRCLPAGKVLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARET  234 (265)
T ss_dssp             HHHHCCCBCHHHH-------HHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHcCCCcCHHHH-------HHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            9999999999999       7788885541 1       1122221    1   1345555544322  2222  22333


Q ss_pred             CccccccCCchHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .....++.+ +|..+...+|.+|
T Consensus       235 ~~~~~~~~s-~d~~egi~Af~ek  256 (265)
T 3qxz_A          235 ADHLRLMGS-QDAAEGPRAFIDG  256 (265)
T ss_dssp             HHHHHHHTS-THHHHHHHHHHHT
T ss_pred             HHHHHHhCC-hHHHHHHHHHHcC
Confidence            445556667 7777777777765

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=98.98  E-value=2.8e-11  Score=104.27  Aligned_cols=148  Identities=18%  Similarity=0.198  Sum_probs=100.7

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++++..+......+         .-|...+
T Consensus       100 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r---------~vG~~~A  170 (275)
T 4eml_A          100 DLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLAR---------IVGQKKA  170 (275)
T ss_dssp             HHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHH---------HHCHHHH
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHH---------HhHHHHH
Confidence            4556678899999999999999999999999999999999999999999 86654333322211         1287777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCH-HHHHHc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISA-QDAYNA  264 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a-~~a~~~  264 (315)
                        .+|+++++.+.+.++       .++|++..+.        ...+++.+   +   ....|+++..+..... ....+.
T Consensus       171 --~~llltg~~i~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~  241 (275)
T 4eml_A          171 --REIWYLCRQYSAQEA-------ERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIRCLKAAFNADCDGQAGLQELAG  241 (275)
T ss_dssp             --HHHHHHCCCEEHHHH-------HHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             --HHHHHhCCCcCHHHH-------HHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHHHH
Confidence              999999999999999       7778775441        11222222   1   2356666665532111 111222


Q ss_pred             CccccccCCchHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .....++.+ +|..|...+|.+|
T Consensus       242 ~~~~~~~~s-~d~~eg~~AF~ek  263 (275)
T 4eml_A          242 NATLLYYMT-EEGSEGKQAFLEK  263 (275)
T ss_dssp             HHHHHHHTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHhcC-HHHHHHHHHHHcC
Confidence            233445667 7777777777765

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=98.97  E-value=2.5e-09  Score=101.57  Aligned_cols=94  Identities=27%  Similarity=0.404  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573          8 PLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV   86 (315)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl   86 (315)
                      +++++.+++.|.+.++++.+++.| |.+.+|..++ ++.+++.+++++..+++||+++|.+++.++..-  .++.++|++
T Consensus       369 ~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~-~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i  445 (563)
T 2uz1_A          369 ALHPFHASQVIAKHVDAGVTVVADGALTYLWLSEV-MSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL--EAGRRTILV  445 (563)
T ss_dssp             SCCHHHHHHHHHTTCSTTEEEEECSSHHHHHHHHH-HTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHH--HHTCEEEEE
T ss_pred             CcCHHHHHHHHHHhCCCCcEEEEcCchHHHHHHHh-ccccCCCeEECCCCCccccChHHHHHHHHHHhh--CCCCeEEEE
Confidence            899999999999999999999999 7767888887 888899999999999999999999999999742  256799999


Q ss_pred             EcCCCccccchhhhHHhh
Q psy12573         87 QGDSAFGFSGMELETLAV  104 (315)
Q Consensus        87 ~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|||.+++....|.+..+
T Consensus       446 ~GDG~~~~~~~~L~ta~~  463 (563)
T 2uz1_A          446 TGDGSVGYSIGEFDTLVR  463 (563)
T ss_dssp             EEHHHHGGGTTHHHHHHH
T ss_pred             EccHHHhCCHHHHHHHHH
Confidence            999998777666666543

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=98.97  E-value=1.5e-10  Score=98.71  Aligned_cols=145  Identities=18%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+....+.+.       +     |..
T Consensus        87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~pg~~~l~~~-------v-----G~~  154 (254)
T 3isa_A           87 IEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDI-------V-----GAD  154 (254)
T ss_dssp             HHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCSHHHHHHH-------H-----CHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccHHHHHHHHH-------c-----CHH
Confidence            356677889999999999999999999999999999999999999999999 988743222222       1     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--H------HHHhhhc---CH---HHHHHHHhcCCCCCHHHHHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--A------VALTRKV---PL---GVVRSMTITGIPISAQDAYN  263 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~------~~l~~~~---g~---~~a~~~~~~g~~~~a~~a~~  263 (315)
                      .+  .+++++++.+.+.++       .++|++..+.  .      ..+.+.+   ++   ...|+++... ..   + .+
T Consensus       155 ~A--~~l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~-~~---~-~e  220 (254)
T 3isa_A          155 QA--LSILGSARAFDADEA-------RRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDD-HD---D-AD  220 (254)
T ss_dssp             HH--HHHHTTTCEEEHHHH-------HHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHHHHHHHHSCC-CH---H-HH
T ss_pred             HH--HHHHHhCCCCcHHHH-------HHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-hH---H-HH
Confidence            77  999999999999999       7788875431  1      1122222   11   2445554221 11   1 11


Q ss_pred             cCccccccCCchHHHHHHHHHHHHHHh
Q psy12573        264 AGLITRVVSSNEELESETKVLTSAILE  290 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~  290 (315)
                      .......+.+ ++..+...+|.+|...
T Consensus       221 ~~~~~~~~~s-~d~~egi~af~ekr~p  246 (254)
T 3isa_A          221 LAALARSAAQ-PGFKARIRDYLAQPAA  246 (254)
T ss_dssp             HHHHHHHHHS-TTHHHHHHHHHHC---
T ss_pred             HHHHHHHhCC-HHHHHHHHHHHhcCCC
Confidence            1122344556 6777777777776543

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=98.95  E-value=2.4e-11  Score=104.03  Aligned_cols=144  Identities=17%  Similarity=0.288  Sum_probs=103.2

Q ss_pred             HHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhH
Q psy12573        125 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQ  203 (315)
Q Consensus       125 ~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~  203 (315)
                      .+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         .|...+  .+
T Consensus        92 ~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~---------vG~~~a--~~  160 (260)
T 1mj3_A           92 HITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRA---------VGKSLA--ME  160 (260)
T ss_dssp             GGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHH---------HCHHHH--HH
T ss_pred             HHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHH---------hCHHHH--HH
Confidence            356789999999999999999999999999999999999999999 998876654322221         177776  99


Q ss_pred             HHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHHH--cCcc
Q psy12573        204 LVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAYN--AGLI  267 (315)
Q Consensus       204 l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~--~Glv  267 (315)
                      |+++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++..+...+.+++++  ....
T Consensus       161 l~ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~  233 (260)
T 1mj3_A          161 MVLTGDRISAQDA-------KQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLF  233 (260)
T ss_dssp             HHHHCCCEEHHHH-------HHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred             HHHcCCcCCHHHH-------HHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            9999999999999       7777774431        11222221   1   236677776665556555533  3344


Q ss_pred             ccccCCchHHHHHHHHHHHH
Q psy12573        268 TRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ..++.+ ++..+...+|.+|
T Consensus       234 ~~~~~s-~d~~egi~af~~k  252 (260)
T 1mj3_A          234 YSTFAT-DDRREGMSAFVEK  252 (260)
T ss_dssp             HHGGGS-HHHHHHHHHHHTT
T ss_pred             HHHhcC-HHHHHHHHHHHcC
Confidence            556667 7777777777654

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=98.95  E-value=2.2e-11  Score=104.52  Aligned_cols=142  Identities=18%  Similarity=0.175  Sum_probs=101.4

Q ss_pred             HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      .+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..++..+.         -|...+  .+|+
T Consensus        99 ~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~---------vG~~~A--~~l~  167 (265)
T 3swx_A           99 RQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRT---------AGWGNA--MRWM  167 (265)
T ss_dssp             CCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHH---------HCHHHH--HHHH
T ss_pred             HhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHH---------hhHHHH--HHHH
Confidence            5689999999999999999999999999999999999999999 998877665533222         277777  9999


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCcccc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLITR  269 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv~~  269 (315)
                      ++++.+.+.++       .++|++..+.        ...+.+.+   +   ....|+++..+...+.++++  +......
T Consensus       168 ltg~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~  240 (265)
T 3swx_A          168 LTADTFDAVEA-------HRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRE  240 (265)
T ss_dssp             TTCCCEEHHHH-------HHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HcCCcCCHHHH-------HHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            99999999999       7778874431        11222222   1   23556666554434444443  3334455


Q ss_pred             ccCCchHHHHHHHHHHHH
Q psy12573        270 VVSSNEELESETKVLTSA  287 (315)
Q Consensus       270 v~~~~~~~~~~~~~~~~~  287 (315)
                      ++.+ ++..+...+|.+|
T Consensus       241 ~~~s-~d~~eg~~af~ek  257 (265)
T 3swx_A          241 LFTS-EDATLGVQAFLSR  257 (265)
T ss_dssp             HHTS-HHHHHHHHHHHTT
T ss_pred             HhCC-HHHHHHHHHHhcC
Confidence            6666 7777777777654

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=98.95  E-value=2.1e-09  Score=102.25  Aligned_cols=94  Identities=19%  Similarity=0.221  Sum_probs=82.0

Q ss_pred             CCCCCHHHHHHHHHhhCCC-----CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCC
Q psy12573          6 SVPLNYYAAIHAVQVSIPD-----NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP   79 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~   79 (315)
                      +.+++++.+++.|++.+++     |.+++.| |.+..|..+. +..+++++++++..+++||+++|.+++.++..    +
T Consensus       379 ~~~~~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~-~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~----~  453 (573)
T 2iht_A          379 EDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLF-ARADQPFGFLTSAGCSSFGYGIPAAIGAQMAR----P  453 (573)
T ss_dssp             SSSBCHHHHHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHH-CCCCSTTSEECCSSSCCTTCHHHHHHHHHHHS----T
T ss_pred             cCCcCHHHHHHHHHHhcccccCCCCcEEEEcCcHhHHHHHHh-cCcCCCCeEEcCCCCcccccHHHHHHHHHHhC----C
Confidence            4579999999999999998     9999999 8888888887 88888899999989999999999999999985    6


Q ss_pred             CCeEEEEEcCCCccccchhhhHHhh
Q psy12573         80 GKRVVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        80 ~~~vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +.++|++.|||.+++....|.+..+
T Consensus       454 ~~~vv~i~GDG~~~~~~~~L~~a~~  478 (573)
T 2iht_A          454 DQPTFLIAGDGGFHSNSSDLETIAR  478 (573)
T ss_dssp             TSCEEEEEEHHHHHHTGGGHHHHHH
T ss_pred             CCcEEEEEccHHHHhHHHHHHHHHH
Confidence            7899999999998777666666543

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=98.95  E-value=2.4e-10  Score=96.07  Aligned_cols=96  Identities=20%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+......+++         |..
T Consensus        84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~---------g~~  154 (233)
T 3r6h_A           84 GFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRL---------TPS  154 (233)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHS---------CHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHh---------CHH
Confidence            456778889999999999999999999999999999999999999999999 9865554444333333         666


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       155 ~a--~~l~ltg~~~~a~eA-------~~~Glv~~v  180 (233)
T 3r6h_A          155 AY--QQAAGLAKTFFGETA-------LAAGFIDEI  180 (233)
T ss_dssp             HH--HHHHHSCCEECHHHH-------HHHTSCSEE
T ss_pred             HH--HHHHHcCCcCCHHHH-------HHcCCCcEe
Confidence            66  999999999999999       777887554

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=98.94  E-value=5.5e-09  Score=99.36  Aligned_cols=92  Identities=17%  Similarity=0.236  Sum_probs=77.0

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      +.+++++.+++.|++.+++|.+++.|.++..|.... +..+++.+++++..+++||+++|.+++.++..    ++.++|+
T Consensus       362 ~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~----~~~~vv~  436 (568)
T 2wvg_A          362 SAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQR-MKLPNGARVEYEMQWGHIGWSVPAAFGYAVGA----PERRNIL  436 (568)
T ss_dssp             TSBCCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHT-CCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC----TTSEEEE
T ss_pred             CCccCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhh-cccCCCCeEEeCCCcchhhhHHHHHHHHHHhC----CCCcEEE
Confidence            457999999999999999999999994434565554 77888899999999999999999999999985    7789999


Q ss_pred             EEcCCCccccchhhhHH
Q psy12573         86 VQGDSAFGFSGMELETL  102 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~  102 (315)
                      ++|||.+++...++.+.
T Consensus       437 i~GDGs~~~~~~el~ta  453 (568)
T 2wvg_A          437 MVGDGSFQLTAQEVAQM  453 (568)
T ss_dssp             EEEHHHHHHHGGGHHHH
T ss_pred             EEcChhHhccHHHHHHH
Confidence            99999977665555544

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=98.94  E-value=6.4e-09  Score=98.92  Aligned_cols=92  Identities=21%  Similarity=0.206  Sum_probs=77.1

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ..+++++.+++.|++.+++|.+++.| |++. +..+. +..+++++++++..+++||+++|.+++.++..    ++.+||
T Consensus       374 ~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~-~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~----~~~~vv  447 (570)
T 2vbf_A          374 SAPLSQDRLWQAVESLTQSNETIVAEQGTSF-FGAST-IFLKSNSRFIGQPLWGSIGYTFPAALGSQIAD----KESRHL  447 (570)
T ss_dssp             SSBCCHHHHHHHHHHHCCSSEEEEECTTHHH-HHHTT-SCCCTTCEEECCTTTCCTTTHHHHHHHHHHHC----TTSEEE
T ss_pred             CCCcCHHHHHHHHHHhcCCCCEEEEeCCHHH-HHHHh-cccCCCCeEecCccchhhhhhHHHHHHHHHhC----CCCcEE
Confidence            45799999999999999999999999 6554 54443 67778889999999999999999999999984    778999


Q ss_pred             EEEcCCCccccchhhhHHh
Q psy12573         85 CVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~  103 (315)
                      +++|||.+++...+|.+..
T Consensus       448 ~~~GDG~~~~~~~eL~ta~  466 (570)
T 2vbf_A          448 LFIGDGSLQLTVQELGLSI  466 (570)
T ss_dssp             EEEEHHHHHHHGGGHHHHH
T ss_pred             EEEcchhhhcCHHHHHHHH
Confidence            9999999777655665554

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=98.94  E-value=8.3e-09  Score=97.81  Aligned_cols=92  Identities=23%  Similarity=0.270  Sum_probs=77.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ..+++++.+++.|++.+++|.+++.| |.+. |..+. +..+++..++++..+++||+++|.+++.++..    ++.+||
T Consensus       357 ~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~-~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~----~~~~vv  430 (552)
T 1ovm_A          357 DGSLTQENFWRTLQTFIRPGDIILADQGTSA-FGAID-LRLPADVNFIVQPLWGSIGYTLAAAFGAQTAC----PNRRVI  430 (552)
T ss_dssp             CSBCCHHHHHHHHHHHCCTTCEEEECTTHHH-HHHTT-CCCCSSCEEECCTTTCCTTHHHHHHHHHHHHC----TTSCEE
T ss_pred             CCccCHHHHHHHHHHhcCCCCEEEECCchHH-HHHHh-cccCCCCeEEechhhHhhhhHHHHHHHHHHhC----CCCcEE
Confidence            45799999999999999999999999 6554 55554 77788888999999999999999999999984    678999


Q ss_pred             EEEcCCCccccchhhhHHh
Q psy12573         85 CVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~  103 (315)
                      ++.|||.+++...++.+..
T Consensus       431 ~~~GDG~~~~~~~el~ta~  449 (552)
T 1ovm_A          431 VLTGDGAAQLTIQELGSML  449 (552)
T ss_dssp             EEEEHHHHHHHTTHHHHHH
T ss_pred             EEECchHHHhHHHHHHHHH
Confidence            9999999776666665544

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=98.93  E-value=5.5e-09  Score=99.32  Aligned_cols=92  Identities=15%  Similarity=0.198  Sum_probs=76.7

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++.+++.|++.+++|.+++.| |.+ .|.... +..+++.+++++..+++||+++|.+++.++..    ++.+||
T Consensus       358 ~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~-~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala~----~~~~vv  431 (566)
T 2vbi_A          358 EAGLTNDEIVRHINALLTSNTTLVAETGDS-WFNAMR-MTLPRGARVELEMQWGHIGWSVPSAFGNAMGS----QDRQHV  431 (566)
T ss_dssp             TSCCCHHHHHHHHHHHCCTTEEEEECSSHH-HHHHHT-CCCCTTCEEECCTTTCCTTTHHHHHHHHHHTC----TTSEEE
T ss_pred             CCccCHHHHHHHHHHhcCCCCEEEECCchH-HHhhhh-eECCCCCEEEecCcccchhhHHHHHHHHHHhC----CCCcEE
Confidence            45799999999999999999999999 554 465554 77777888999889999999999999999974    678999


Q ss_pred             EEEcCCCccccchhhhHHh
Q psy12573         85 CVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~  103 (315)
                      +++|||.+++...+|.++.
T Consensus       432 ~~~GDG~~~~~~~eL~ta~  450 (566)
T 2vbi_A          432 VMVGDGSFQLTAQEVAQMV  450 (566)
T ss_dssp             EEEEHHHHHHHGGGHHHHH
T ss_pred             EEEcchHHHhhHHHHHHHH
Confidence            9999999776555555443

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=98.93  E-value=4.4e-11  Score=103.69  Aligned_cols=148  Identities=18%  Similarity=0.207  Sum_probs=100.9

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++++.........+    -+     |...+
T Consensus       114 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r----~v-----G~~~A  184 (289)
T 3t89_A          114 DFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMAR----IV-----GQKKA  184 (289)
T ss_dssp             HHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHH----HH-----CHHHH
T ss_pred             HHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHH----hc-----CHHHH
Confidence            4556788899999999999999999999999999999999999999999 85443322322211    12     77777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHH-HHHHc
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQ-DAYNA  264 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~-~a~~~  264 (315)
                        .+|+++++.+.+.++       .++|++..+.        ...+++.+   +   ....|+++..+...... ...+.
T Consensus       185 --~~llltG~~i~A~eA-------~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~e~  255 (289)
T 3t89_A          185 --REIWFLCRQYDAKQA-------LDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAG  255 (289)
T ss_dssp             --HHHHHHCCCEEHHHH-------HHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             --HHHHHcCCcccHHHH-------HHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence              999999999999999       7778775441        11222222   1   23567777655431111 11222


Q ss_pred             CccccccCCchHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .....++.+ +|..|...+|.+|
T Consensus       256 ~~~~~~~~s-~d~~Eg~~AF~ek  277 (289)
T 3t89_A          256 NATMLFYMT-EEGQEGRNAFNQK  277 (289)
T ss_dssp             HHHHHHTTS-STTTHHHHHHHTT
T ss_pred             HHHHHHhcC-HHHHHHHHHHhcC
Confidence            233455667 7778888887765

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=98.92  E-value=6.7e-11  Score=101.21  Aligned_cols=142  Identities=21%  Similarity=0.215  Sum_probs=94.6

Q ss_pred             HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      .+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..++..+.    +     |...+  .+|+
T Consensus        98 ~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~----v-----G~~~A--~~l~  166 (262)
T 3r9q_A           98 LRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRL----I-----GHSRA--MDLI  166 (262)
T ss_dssp             CCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHH----H-----CHHHH--HHHH
T ss_pred             HhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHH----h-----CHHHH--HHHH
Confidence            4689999999999999999999999999999999999999999 998877666543222    1     77777  9999


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHHHcCc-cccc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAYNAGL-ITRV  270 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~~~Gl-v~~v  270 (315)
                      ++++.+.+.++       .++|++..+.        ...+++.+   +   ....|+++..+...+.+++++... ...+
T Consensus       167 ltG~~~~A~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l~~e~~~~~~  239 (262)
T 3r9q_A          167 LTGRPVHANEA-------LDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIAQWGMAEEAALDNEFGSIER  239 (262)
T ss_dssp             HHCCCEEHHHH-------HHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHTHHHH
T ss_pred             HcCCcCCHHHH-------HHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence            99999999999       7788874431        11233322   1   246788887777777766643211 3333


Q ss_pred             cCCchHHHHHHHHHHHHH
Q psy12573        271 VSSNEELESETKVLTSAI  288 (315)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l  288 (315)
                      +.+  |..|...+|.+|.
T Consensus       240 ~~s--d~~Eg~~AF~ekr  255 (262)
T 3r9q_A          240 VAT--EALEGAGRFAAGE  255 (262)
T ss_dssp             HHC---------------
T ss_pred             hcc--HHHHHHHHHHcCC
Confidence            333  5667777777764

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=98.91  E-value=2.8e-10  Score=95.57  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=78.9

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhh-cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      +++++..+.+.++|+|++|||.+.|+|..++..||++++++. ++|+.|+.+ ++.+..+......+++         |.
T Consensus        83 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~i---------g~  153 (232)
T 3ot6_A           83 GSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRL---------RK  153 (232)
T ss_dssp             HHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHS---------CH
T ss_pred             HHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHh---------CH
Confidence            346677889999999999999999999999999999999997 799999999 9874444443333333         66


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+++++++.+.+.++       .++|++..+
T Consensus       154 ~~a--~~l~ltg~~i~A~eA-------~~~GLv~~v  180 (232)
T 3ot6_A          154 SAF--NRSVINAEMFDPEGA-------MAAGFLDKV  180 (232)
T ss_dssp             HHH--HHHHTSCCEECHHHH-------HHHTSCSEE
T ss_pred             HHH--HHHHHcCCccCHHHH-------HHCCCCCEe
Confidence            666  999999999999999       778887554

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=98.91  E-value=2.8e-11  Score=103.40  Aligned_cols=139  Identities=16%  Similarity=0.199  Sum_probs=83.7

Q ss_pred             HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      .+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.++.+..++..+.    +     |...+  .+|+
T Consensus       102 ~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~----v-----G~~~A--~~l~  170 (258)
T 3lao_A          102 PRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRA----A-----GWTDA--MRYI  170 (258)
T ss_dssp             SCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHH----H-----CHHHH--HHHH
T ss_pred             HhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHH----h-----CHHHH--HHHH
Confidence            5789999999999999999999999999999999999999999 998876544322211    1     77777  9999


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCcccc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGLITR  269 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Glv~~  269 (315)
                      ++++.+.+.++       .++|++..+.        ...+++.+   +   ....|+++..+...+.++++  +......
T Consensus       171 ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~  243 (258)
T 3lao_A          171 LTGDEFDADEA-------LRMRLLTEVVEPGEELARALEYAERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAA  243 (258)
T ss_dssp             TTCCCEEHHHH-------HHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC----------------
T ss_pred             HcCCCCCHHHH-------HHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            99999999999       7778774431        11222222   1   24667777665554444443  3345555


Q ss_pred             ccCCchHHHHHHHHH
Q psy12573        270 VVSSNEELESETKVL  284 (315)
Q Consensus       270 v~~~~~~~~~~~~~~  284 (315)
                      ++.+ +|..+...+|
T Consensus       244 ~~~s-~d~~eg~~AF  257 (258)
T 3lao_A          244 LIGS-EDVREGVLAM  257 (258)
T ss_dssp             ---------------
T ss_pred             HhCC-HHHHHHHHhh
Confidence            6666 6666666554

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=98.90  E-value=9.4e-11  Score=100.49  Aligned_cols=139  Identities=22%  Similarity=0.260  Sum_probs=100.2

Q ss_pred             CCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhhc
Q psy12573        130 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATC  208 (315)
Q Consensus       130 ~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~  208 (315)
                      ++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+...+.+         |...+  .+|++++
T Consensus       102 ~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v---------G~~~a--~~l~ltg  170 (265)
T 3qxi_A          102 AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERI---------PYAIA--MELALTG  170 (265)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHS---------CHHHH--HHHHHHC
T ss_pred             CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHh---------CHHHH--HHHHHcC
Confidence            8999999999999999999999999999999999999999 9988877665443322         77777  9999999


Q ss_pred             CeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHH--HHcCccccccC
Q psy12573        209 DLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDA--YNAGLITRVVS  272 (315)
Q Consensus       209 d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a--~~~Glv~~v~~  272 (315)
                      +.+.+.++       .++|++....        ...+++.+   +   ....|+++......+.+++  .+......++.
T Consensus       171 ~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~  243 (265)
T 3qxi_A          171 DNLSAERA-------HALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIFT  243 (265)
T ss_dssp             CCEEHHHH-------HHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHH-------HHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence            99999999       7788874431        11222222   1   2356666665544443333  23344555566


Q ss_pred             CchHHHHHHHHHHHH
Q psy12573        273 SNEELESETKVLTSA  287 (315)
Q Consensus       273 ~~~~~~~~~~~~~~~  287 (315)
                      + +|..+...+|.+|
T Consensus       244 s-~d~~eg~~af~ek  257 (265)
T 3qxi_A          244 S-NDAKEGAIAFAEK  257 (265)
T ss_dssp             C-HHHHHHHHHHHTT
T ss_pred             C-HHHHHHHHHHHcC
Confidence            6 7777777777654

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=98.87  E-value=8.7e-11  Score=99.42  Aligned_cols=91  Identities=19%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             HHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhh
Q psy12573        124 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGC  202 (315)
Q Consensus       124 ~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~  202 (315)
                      ..+.+.++|+|++|||.++|+|..++..||++++++.++|+.|+.+ |+.++.+..+...+.         -|...+  .
T Consensus        84 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~---------vG~~~a--~  152 (243)
T 2q35_A           84 GLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREK---------LGSELA--Q  152 (243)
T ss_dssp             HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHH---------HCHHHH--H
T ss_pred             HHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHH---------hCHHHH--H
Confidence            3467899999999999999999999999999999999999999999 998877665433222         177776  9


Q ss_pred             HHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        203 QLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       203 ~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +++++++.+.+.++       .++|++...
T Consensus       153 ~l~ltg~~~~a~eA-------~~~GLv~~v  175 (243)
T 2q35_A          153 EMIYTGENYRGKEL-------AERGIPFPV  175 (243)
T ss_dssp             HHHHHCCCEEHHHH-------HHTTCSSCE
T ss_pred             HHHHcCCCCCHHHH-------HHcCCCCEe
Confidence            99999999999999       888988765

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=98.85  E-value=1.3e-08  Score=96.68  Aligned_cols=96  Identities=20%  Similarity=0.247  Sum_probs=78.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.+++++++++.|++.+++|++++.| |.+ .|..+. +..++++.++++..+++||+++|.+++.++..=+...+.++|
T Consensus       362 ~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~-~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv  439 (563)
T 2vk8_A          362 STPLKQEWMWNQLGNFLQEGDVVIAETGTS-AFGINQ-TTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVI  439 (563)
T ss_dssp             TCBCCHHHHHHHHTTTCCTTCEEEECTTHH-HHHGGG-SCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred             CCCcCHHHHHHHHHHhCCCCCEEEECCchH-HHHHhh-cCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEE
Confidence            45899999999999999999999999 554 455554 777788889999999999999999999999863333447899


Q ss_pred             EEEcCCCccccchhhhHHh
Q psy12573         85 CVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~  103 (315)
                      ++.|||.+++...++.+..
T Consensus       440 ~~~GDG~~~~~~~el~ta~  458 (563)
T 2vk8_A          440 LFIGDGSLQLTVQEISTMI  458 (563)
T ss_dssp             EEEEHHHHHHHGGGHHHHH
T ss_pred             EEEcchHhhccHHHHHHHH
Confidence            9999999877666665544

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=98.83  E-value=2.7e-10  Score=98.48  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh-hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      .+++++..+.+.++|+|++|||.+.|+|..++..||+++++ +.++|+.|+.+ |+.++.+..+...+.         -|
T Consensus       100 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~---------vG  170 (280)
T 1pjh_A          100 RNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLK---------FG  170 (280)
T ss_dssp             HHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHH---------HC
T ss_pred             HHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHH---------hC
Confidence            34566778899999999999999999999999999999999 99999999999 998877665533222         17


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCS  231 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~  231 (315)
                      ...+  .+|+++++.+.+.++       .++|++..
T Consensus       171 ~~~A--~~llltg~~~~a~eA-------~~~GLv~~  197 (280)
T 1pjh_A          171 TNTT--YECLMFNKPFKYDIM-------CENGFISK  197 (280)
T ss_dssp             HHHH--HHHHHTTCCEEHHHH-------HHTTCCSE
T ss_pred             HHHH--HHHHHhCCCCCHHHH-------HHCCCcce
Confidence            7777  999999999999999       77777743

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=98.83  E-value=6.1e-11  Score=101.05  Aligned_cols=89  Identities=26%  Similarity=0.339  Sum_probs=75.8

Q ss_pred             HHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHH
Q psy12573        126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQL  204 (315)
Q Consensus       126 ~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l  204 (315)
                      +.+.++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ ++.++.+..++..+.    +     |...+  .+|
T Consensus        88 l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~----v-----G~~~A--~~l  156 (256)
T 3pe8_A           88 WPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQK----V-----GVGLA--RRM  156 (256)
T ss_dssp             CCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHH----H-----CHHHH--HHH
T ss_pred             HHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHh----c-----CHHHH--HHH
Confidence            35689999999999999999999999999999999999999999 998877665533222    1     77777  999


Q ss_pred             HhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        205 VATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       205 ~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +++++.+.+.++       .++|++...
T Consensus       157 ~ltg~~~~a~eA-------~~~GLv~~v  177 (256)
T 3pe8_A          157 SLTGDYLSAQDA-------LRAGLVTEV  177 (256)
T ss_dssp             HHHCCCEEHHHH-------HHHTSCSCE
T ss_pred             HHcCCCCCHHHH-------HHCCCCeEE
Confidence            999999999999       778888654

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=98.81  E-value=6.5e-10  Score=98.36  Aligned_cols=97  Identities=22%  Similarity=0.230  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      .+..+.+.+..+.+.++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ +..+..+.+.+.            
T Consensus       142 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~lG~~P~~g~l~~~------------  209 (333)
T 3njd_A          142 MMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAGLWAHR------------  209 (333)
T ss_dssp             HHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGTTCCCTTCCHHHH------------
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhceeccCHHHHHHHH------------
Confidence            3455667778899999999999999999999999999999999999999999998 777765522222            


Q ss_pred             ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      -|...+  .+|+++++.+.+.++       .++||+..+
T Consensus       210 vG~~~A--~ellltG~~i~A~eA-------~~~GLV~~v  239 (333)
T 3njd_A          210 LGDQRA--KRLLFTGDCITGAQA-------AEWGLAVEA  239 (333)
T ss_dssp             HCHHHH--HHHHTTCCEEEHHHH-------HHTTSSSBC
T ss_pred             HHHHHH--HHHHhcCCCCCHHHH-------HHCCCccEe
Confidence            288777  999999999999999       778887554

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.77  E-value=1e-09  Score=106.39  Aligned_cols=93  Identities=28%  Similarity=0.373  Sum_probs=79.3

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      +++..+.++++|+|++|||.+.|+|.+++..||++++++.++|+.|+.+ |+.++.+.+.+..+    .+     |...+
T Consensus        97 ~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~r----lv-----G~~~A  167 (742)
T 3zwc_A           97 SLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPR----VV-----GVPVA  167 (742)
T ss_dssp             HHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHH----HH-----CHHHH
T ss_pred             HHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHH----hh-----hHHHH
Confidence            3456678899999999999999999999999999999999999999999 99998887764422    22     87777


Q ss_pred             hhhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573        200 AGCQLVATCDLAIATTASKFSTPGARHGIFCS  231 (315)
Q Consensus       200 ~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~  231 (315)
                        ++|+++++.+.+.++       .++|++..
T Consensus       168 --~~l~ltG~~i~a~eA-------~~~GLv~~  190 (742)
T 3zwc_A          168 --LDLITSGKYLSADEA-------LRLGILDA  190 (742)
T ss_dssp             --HHHHHHCCCEEHHHH-------HHHTSCSE
T ss_pred             --HHHHHcCCchhHHHH-------HHcCCccE
Confidence              999999999999999       66676643

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.77  E-value=2.5e-09  Score=103.94  Aligned_cols=97  Identities=18%  Similarity=0.224  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      .+++++..+.++++|+|++|||.+.|+|.+++..||++++++.++|+.|+.+ |+.++.+.+++..+.    +     |.
T Consensus        91 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~----v-----G~  161 (715)
T 1wdk_A           91 EANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRL----I-----GV  161 (715)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHH----H-----CH
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHH----h-----CH
Confidence            3456778899999999999999999999999999999999999999999999 999988766543222    2     77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+++++++.+.+.++       .++|++...
T Consensus       162 ~~A--~~l~ltG~~~~a~eA-------~~~GLv~~v  188 (715)
T 1wdk_A          162 DNA--VEWIASGKENRAEDA-------LKVSAVDAV  188 (715)
T ss_dssp             HHH--HHHHHHCCCEEHHHH-------HHTTSSSEE
T ss_pred             HHH--HHHHHcCCCCCHHHH-------HHCCCceEE
Confidence            777  999999999999999       777877543

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=98.76  E-value=6.5e-10  Score=100.86  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=74.4

Q ss_pred             HcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        127 LRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       127 ~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      ..+++|+|++|||.+.|+|..++..||++++++.++|+.|+.+ |+.+..+ .+.    +++.+     |...+  .+|+
T Consensus       281 ~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g-~~~----L~rlv-----G~~~A--~ell  348 (440)
T 2np9_A          281 PRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAA-NLR----LGRFA-----GPRVS--RQVI  348 (440)
T ss_dssp             CEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTH-HHH----HHHHH-----HHHHH--HHHH
T ss_pred             hcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchH-HHH----HHHHh-----hHHHH--HHHH
Confidence            4689999999999999999999999999999999999999999 9988765 332    22222     87777  9999


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ++++.+.+.++       .++|++..+
T Consensus       349 LtG~~i~A~EA-------~~~GLV~~V  368 (440)
T 2np9_A          349 LEGRRIWAKEP-------EARLLVDEV  368 (440)
T ss_dssp             HHCCCEETTSG-------GGGGTCSEE
T ss_pred             HcCCCCCHHHH-------HHCCCCcEe
Confidence            99999999999       888888655

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=98.74  E-value=4.5e-08  Score=92.99  Aligned_cols=90  Identities=22%  Similarity=0.373  Sum_probs=74.6

Q ss_pred             CCCCCHHHHHHHHHhhCCC--CceE-EeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCC
Q psy12573          6 SVPLNYYAAIHAVQVSIPD--NCII-VGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK   81 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~   81 (315)
                      +.+++++.+++.|++.+|+  +.++ ++| |++ .|.+.. +   .+..++.+..+++||+++|.+++.++..    ++.
T Consensus       371 ~~~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~~-~~~~~~-~---~~~~~~~~~~~g~mG~~l~~A~G~ala~----~~~  441 (565)
T 2nxw_A          371 GEPIAPMDIARAVNDRVRAGQEPLLIAADMGDC-LFTAMD-M---IDAGLMAPGYYAGMGFGVPAGIGAQCVS----GGK  441 (565)
T ss_dssp             SSBCCHHHHHHHHHHHHHTTCCCCEEEECSSHH-HHHHTT-S---CCSCEECCTTTCCTTCHHHHHHHHHHHT----TTC
T ss_pred             CCccCHHHHHHHHHHhcccccCCEEEEecchHH-HHHHHh-C---CCcEEEccCccccccccchHHHHHHHhC----CCC
Confidence            4579999999999999998  9988 889 654 455443 3   6678888888999999999999999985    678


Q ss_pred             eEEEEEcCCCccccchhhhHHhh
Q psy12573         82 RVVCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        82 ~vvvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      ++|+++|||.+++...++.+..+
T Consensus       442 ~vv~i~GDG~~~~~~~~l~ta~~  464 (565)
T 2nxw_A          442 RILTVVGDGAFQMTGWELGNCRR  464 (565)
T ss_dssp             CEEEEEEHHHHHHHGGGGGGHHH
T ss_pred             cEEEEEechHHHhhHHHHHHHHH
Confidence            99999999998877777776543

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=98.73  E-value=3e-08  Score=94.92  Aligned_cols=93  Identities=13%  Similarity=-0.026  Sum_probs=76.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCC-CcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNL-PRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~-~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      ..+++++++++.|++.+|+|.+++.| |.+..|..++ +..+. +.+++++..+++||+++|.+++.++..     +.+|
T Consensus       402 ~~~~~~~~~~~~L~~~lp~d~iv~~d~g~~~~~~~~~-~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala~-----~~~v  475 (604)
T 2x7j_A          402 EDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTF-FEKQDRPFRIYSNRGANGIDGVVSSAMGVCEGT-----KAPV  475 (604)
T ss_dssp             CCTTSHHHHHHHHHHHSCTTCEEEECTTHHHHHHHHH-CCCBSCCCEEECCTTTCCSSSHHHHHHHHHHHH-----TSCE
T ss_pred             cCCCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHh-cccCCCCceEEeCCCcCCcCcHHHHHHHHHhcC-----CCcE
Confidence            35899999999999999999999999 7766777665 44443 778998888899999999999999983     5689


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+++|||.+++...+|.+..+
T Consensus       476 v~i~GDGsf~~~~~eL~ta~~  496 (604)
T 2x7j_A          476 TLVIGDLSFYHDLNGLLAAKK  496 (604)
T ss_dssp             EEEEEHHHHHHTGGGGHHHHH
T ss_pred             EEEEccHHHHhHHHHHHHhhh
Confidence            999999998777666665543

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=98.70  E-value=3.2e-09  Score=90.71  Aligned_cols=95  Identities=19%  Similarity=0.247  Sum_probs=79.3

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCC-cchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST-PGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      +.+++..+.+.++|+|++|+|.+. +|..++..||++++++.++|+. |+.+ |+.++.+..++..+.         -|.
T Consensus       106 ~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~---------vG~  175 (263)
T 2j5g_A          106 GKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLA---------LGL  175 (263)
T ss_dssp             HHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHH---------HHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHH---------cCH
Confidence            345667888999999999999999 5899999999999999999999 9999 998877655433221         176


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+++++++.+.+.++       .++|++...
T Consensus       176 ~~A--~~llltG~~~~A~eA-------~~~GLv~~v  202 (263)
T 2j5g_A          176 YRG--RYFLFTQEKLTAQQA-------YELNVVHEV  202 (263)
T ss_dssp             HHH--HHHHHTTCCEEHHHH-------HHTTSCSEE
T ss_pred             HHH--HHHHHcCCCCCHHHH-------HHCCCccEe
Confidence            666  999999999999999       888888654

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=98.65  E-value=4.3e-09  Score=89.70  Aligned_cols=95  Identities=18%  Similarity=0.212  Sum_probs=79.5

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCC-cchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST-PGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      +++++..+...++|+|++|||.+.| |..++..||++++++.++|+. |+.+ |+.+..+..++..+.         -|.
T Consensus        97 ~~~~~~~l~~~~kPvIAav~G~a~G-G~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~---------vG~  166 (257)
T 1szo_A           97 GQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHV---------LGS  166 (257)
T ss_dssp             HHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHH---------HCH
T ss_pred             HHHHHHHHHcCCCcEEEEECCchHH-HHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHH---------cCH
Confidence            3456677889999999999999995 899999999999999999999 9999 998877665433222         177


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+++++++.+.+.++       .++|++..+
T Consensus       167 ~~A--~~llltG~~~~A~eA-------~~~GLv~~v  193 (257)
T 1szo_A          167 NRG--RYFLLTGQELDARTA-------LDYGAVNEV  193 (257)
T ss_dssp             HHH--HHHHHTTCEEEHHHH-------HHHTSCSEE
T ss_pred             HHH--HHHHHcCCCCCHHHH-------HHCCCceEE
Confidence            776  999999999999999       888888655

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.63  E-value=9.4e-10  Score=106.96  Aligned_cols=92  Identities=17%  Similarity=0.249  Sum_probs=77.4

Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      ++..+.+.++|+|++|||.+.|+|.+++.+||++++++.++|+.|+.+ |++++.+..++..+.    +     |...+ 
T Consensus        94 ~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rl----v-----G~~~A-  163 (725)
T 2wtb_A           94 ITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRL----V-----GLTKA-  163 (725)
T ss_dssp             CCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHH----H-----CHHHH-
T ss_pred             HHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHh----c-----CHHHH-
Confidence            344567789999999999999999999999999999999999999999 999988776543322    1     77776 


Q ss_pred             hhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573        201 GCQLVATCDLAIATTASKFSTPGARHGIFCS  231 (315)
Q Consensus       201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~  231 (315)
                       .+++++++.+.+.++       .++|++..
T Consensus       164 -~~l~ltG~~~~a~eA-------~~~GLv~~  186 (725)
T 2wtb_A          164 -LEMILTSKPVKAEEG-------HSLGLIDA  186 (725)
T ss_dssp             -HHHHHHCCCEEHHHH-------HHHTSCSE
T ss_pred             -HHHHHcCCCCCHHHH-------HHCCccce
Confidence             999999999999999       66777643

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=98.61  E-value=4.1e-09  Score=90.93  Aligned_cols=94  Identities=22%  Similarity=0.205  Sum_probs=76.0

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +.+++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.+..+..+      +.     .-|..
T Consensus       106 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~~~~~~~------~~-----~vG~~  174 (279)
T 3t3w_A          106 YLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGGVEYHGH------TW-----ELGPR  174 (279)
T ss_dssp             THHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSCSSCCH------HH-----HHCHH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCCchHHHH------Hh-----hcCHH
Confidence            445677889999999999999999999999999999999999999999999 8743211111      11     12777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++..+
T Consensus       175 ~A--~~llltG~~i~A~eA-------~~~GLv~~v  200 (279)
T 3t3w_A          175 KA--KEILFTGRAMTAEEV-------AQTGMVNRV  200 (279)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHHTSCSEE
T ss_pred             HH--HHHHHcCCccCHHHH-------HHCCCCcEe
Confidence            77  999999999999999       777887554

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.46  E-value=2.2e-08  Score=92.04  Aligned_cols=96  Identities=15%  Similarity=0.133  Sum_probs=78.8

Q ss_pred             HHHHHH----HcCCCcEEEEEeeEEecccchhccccChhhhhhh--cCCCCcchh--hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        121 DLMLSI----LRHPVPILAIISGVAAAAGCQLVATCDLAIATTA--SKFSTPGYN--ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       121 ~~~~~~----~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                      +++..+    ..+++|+|++|||.+.|+|..++..||++++++.  ++|+.|+.+  |+.++.+..++....  ..+   
T Consensus       116 ~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp~~--RlV---  190 (556)
T 2w3p_A          116 ETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDK--RKV---  190 (556)
T ss_dssp             HHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHT--SCC---
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHHhh--ccC---
Confidence            444556    8899999999999999999999999999999998  999999987  778877766543200  122   


Q ss_pred             EccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        193 ISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       193 v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                        |...+  .+++++++.+.+.++       .++|++..+
T Consensus       191 --G~~rA--~eLlLTGr~isA~EA-------l~lGLVdeV  219 (556)
T 2w3p_A          191 --RHDRA--DIFCTVVEGVRGERA-------KAWRLVDEV  219 (556)
T ss_dssp             --CHHHH--HHHTTCSSCEEHHHH-------HHTTSCSEE
T ss_pred             --CHHHH--HHHHHcCCCCCHHHH-------HHCCCceEE
Confidence              77776  999999999999999       888988665

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=98.46  E-value=3.3e-07  Score=87.28  Aligned_cols=157  Identities=11%  Similarity=0.022  Sum_probs=96.5

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      ++.+++++++++.|++.+|+|++++.+ |....|..++ +. .+.+...+.+.+.+.+|+++|.+++.++      ++.+
T Consensus       382 ~~~~~~~~~~~~~l~~~l~~~~iv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~------~~~~  454 (578)
T 3lq1_A          382 NTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTY-FSQIDKKIKMLANRGANGIDGVVSSALGASV------VFQP  454 (578)
T ss_dssp             C----CTTHHHHHHHHHSCSEEEEEECSSHHHHHHHHH-CCCCSSEEEEECCCSSCCSSSHHHHHHHHTT------TSSS
T ss_pred             cCCCCCHHHHHHHHHHhCCCCCeEEEeCccHHHHHHHh-hcccCCCceEEeCCCccccccHHHHHHHHhc------CCCC
Confidence            356899999999999999999999888 5544455554 32 4556666655444556668999999963      4678


Q ss_pred             EEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc-------------cchh-
Q psy12573         83 VVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAA-------------GCQL-  148 (315)
Q Consensus        83 vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~-------------G~~f-  148 (315)
                      ||+++|||+++++..+|.+..+...  +                     .++.++|--..|.             +..+ 
T Consensus       455 vv~i~GDGsf~~~~~eL~ta~~~~l--~---------------------~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~  511 (578)
T 3lq1_A          455 MFLLIGDLSFYHDMNGLLMAKKYKM--N---------------------LTIVIVNNDGGGIFSFLPQANEPKYFESLFG  511 (578)
T ss_dssp             EEEEEEHHHHHHTGGGGHHHHHTTC--C---------------------EEEEEECCC----------------------
T ss_pred             EEEEEchHHHHhhHHHHHhhccCCC--C---------------------eEEEEEECCcCccccccccccccchhhhhcc
Confidence            9999999998888888877654211  1                     1111111100000             0011 


Q ss_pred             -ccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        149 -VATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       149 -~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                       ....|+..+++.  |+.+..+ ....++...+......++|++..|
T Consensus       512 ~~~~~d~~~~a~a--~G~~~~~v~~~~el~~al~~a~~~~gp~liev  556 (578)
T 3lq1_A          512 TSTELDFRFAAAF--YDADYHEAKSVDELEEAIDKASYHKGLDIIEV  556 (578)
T ss_dssp             ---CCCTHHHHHH--TTCEEEECCSHHHHHHHHHHHTTSSSEEEEEE
T ss_pred             CCCCCCHHHHHHH--cCCceEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence             123577777776  5665555 445566666666667788887655

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=98.44  E-value=7.7e-07  Score=84.30  Aligned_cols=154  Identities=13%  Similarity=0.091  Sum_probs=95.8

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeCCChhhHhhhh-hh-ccCCCccccc-CCCCccccchHHHHHHHHHHhhhcCCCCe
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRS-LL-LNNLPRHRLD-AGTFGTMGVGLGFALAAALYCNHYAPGKR   82 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~l-~~~~~~n~~~-~~~~~~mg~~~~~~l~~~l~~~~~d~~~~   82 (315)
                      +.+++++++++.|++.+|+|++++.+ +... +..+ .+ ..|.....+. .+.++.||+ +|.+++.++.     ++.+
T Consensus       364 ~~~~~~~~~~~~l~~~l~~~~iv~~g-~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-----~~~~  435 (556)
T 3hww_A          364 RDAFGEAQLAHRICDYLPEQGQLFVG-NSLV-VRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-----SGKP  435 (556)
T ss_dssp             CCSSSHHHHHHTGGGTCCTTCEEEEC-SSHH-HHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-----HCCC
T ss_pred             ccCcCHHHHHHHHHHhCCCCCeEEEe-CCcH-HHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-----CCCc
Confidence            56899999999999999999998875 2221 2111 11 1233444554 456688888 9999999997     3568


Q ss_pred             EEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCc-EEEEEeeEEec-----------ccchh--
Q psy12573         83 VVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVP-ILAIISGVAAA-----------AGCQL--  148 (315)
Q Consensus        83 vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~G~~~g-----------~G~~f--  148 (315)
                      ||+++|||.++++..+|.+..+.                        ..| ++.++|--..|           ....+  
T Consensus       436 vv~i~GDGsf~~~~~eL~ta~~~------------------------~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~  491 (556)
T 3hww_A          436 TLAIVGDLSALYDLNALALLRQV------------------------SAPLVLIVVNNNGGQIFSLLPTPQSERERFYLM  491 (556)
T ss_dssp             EEEEEEHHHHHHTGGGHHHHTTC------------------------SSCEEEEEEESCC-----------------CCC
T ss_pred             EEEEEccHHhhhcchhhHhhccc------------------------CCCcEEEEEECCCCCcccCCCCcchhHHHhccC
Confidence            99999999988787777766541                        122 22222211100           00011  


Q ss_pred             ccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        149 VATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       149 ~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      ....|+..+++.  |+.+..+ ....++...+......++|++..+
T Consensus       492 ~~~~d~~~~a~a--~G~~~~~v~~~~~l~~al~~a~~~~gp~liev  535 (556)
T 3hww_A          492 PQNVHFEHAAAM--FELKYHRPQNWQELETAFADAWRTPTTTVIEM  535 (556)
T ss_dssp             CCCCCSHHHHHH--TTCEEECCSSHHHHHHHHHHHTTSSSEEEEEE
T ss_pred             CCCCCHHHHHHH--cCCcEEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            124677777766  5655555 444556666666666788877655

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.34  E-value=1.8e-06  Score=70.92  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=72.3

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCC---CCchH-------------HHHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIF---CSTPA-------------VALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~---~~~~~-------------~~l~  238 (315)
                      ..++.+..+++||++.+.|.|..+|..++++||.  +++.+.+.+++....-|..   .+...             ..+.
T Consensus        76 ~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a  155 (208)
T 2cby_A           76 AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNA  155 (208)
T ss_dssp             HHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999999998  9999999998876553321   11100             0122


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHHHH
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELES  279 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~~~  279 (315)
                      +..|  .....+.+..+..++++||+++||++++....+++.+
T Consensus       156 ~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~  198 (208)
T 2cby_A          156 EFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGE  198 (208)
T ss_dssp             HHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC-----
T ss_pred             HHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchHHHHH
Confidence            2223  3456677888999999999999999999876444433

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=97.78  E-value=0.00015  Score=59.59  Aligned_cols=97  Identities=12%  Similarity=0.092  Sum_probs=69.9

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCC---CCch--HH-----------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIF---CSTP--AV-----------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~---~~~~--~~-----------~l~  238 (315)
                      ..++.+..+++||++.+.|.|..+|..++++||.  +++.+.+.+++.....|..   .+..  ..           .+.
T Consensus        87 ~I~~~i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya  166 (215)
T 2f6i_A           87 AILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLS  166 (215)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677888999999999999999999999999  9999999998766543321   1110  00           011


Q ss_pred             hh--cCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RK--VPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~--~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +.  .......+++.....++++||+++||||++...
T Consensus       167 ~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          167 SFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             HHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCC
Confidence            11  223455666655566899999999999999875

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=97.76  E-value=0.00019  Score=58.36  Aligned_cols=97  Identities=19%  Similarity=0.172  Sum_probs=71.0

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCC---CCchH--H-----------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIF---CSTPA--V-----------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~---~~~~~--~-----------~l~  238 (315)
                      ..+..+..+++||++.+.|.|..+|..++++||  .+++.+.+++.+....-|..   .+...  .           .++
T Consensus        76 ~I~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a  155 (203)
T 3qwd_A           76 AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILS  155 (203)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667788999999999999999999999999  59999999998865543321   11110  0           012


Q ss_pred             hhc--CHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RKV--PLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~~--g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +..  ......+++.....++++||+++|+++++...
T Consensus       156 ~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~  192 (203)
T 3qwd_A          156 ERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP  192 (203)
T ss_dssp             HHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCC
T ss_pred             HHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCC
Confidence            222  23456666666677999999999999999987

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.60  E-value=0.00055  Score=64.35  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             HHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeC-CceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHH-hcCCCC
Q psy12573        179 MLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATT-ASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMT-ITGIPI  256 (315)
Q Consensus       179 ~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~-~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~-~~g~~~  256 (315)
                      ...+.....|+|+.+.|+|.|||... ..||++++.+ .+++++.--+  ++-.   ..-...++...+++++ .+|+.+
T Consensus       174 ~~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi~~---~~~~~~~d~~~A~el~~~tge~v  247 (587)
T 1pix_A          174 NAELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IMGG---MNPKGHVDLEYANEIADMVDRTG  247 (587)
T ss_dssp             HHHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TCCS---CCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HHhh---hccccccchhHHHHHHHHhCCcc
Confidence            34566788999999999999999999 8889887765 4766652211  0100   0011136788999998 788877


Q ss_pred             CHHH-----H--HHcCccccccCCchHHHHHHHHHHHHH
Q psy12573        257 SAQD-----A--YNAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       257 ~a~~-----a--~~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                      ++++     .  .+.|+++.++++.++..+.++++...+
T Consensus       248 ~~e~lgga~~h~~~~GvvD~vv~~e~~a~~~~r~~ls~l  286 (587)
T 1pix_A          248 KTEPPGAVDIHYTETGFMREVYASEEGVLEGIKKYVGML  286 (587)
T ss_dssp             CCCCSSBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred             ChhhcccHHHHHhhcCceeEecCCHHHHHHHHHHHHHhC
Confidence            6554     2  368999999998333555555555443

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=97.59  E-value=8.2e-05  Score=60.20  Aligned_cols=97  Identities=15%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCC---CchH--H-----------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFC---STPA--V-----------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~---~~~~--~-----------~l~  238 (315)
                      ..++.+..+++||++.+.|.|..+|..++++||.  +++.+.+.++......|...   +...  .           .+.
T Consensus        75 ~I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a  154 (193)
T 1yg6_A           75 SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMA  154 (193)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677889999999999999999999999999  99999998877654433210   0000  0           011


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +..|  .....+++..+..++++||+++||+|++..+
T Consensus       155 ~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          155 LHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             HHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHhCCCHHHHHHHhcCCeEEcHHHHHHcCCCCEecCC
Confidence            2222  2345555544556799999999999999865

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=97.58  E-value=0.00028  Score=59.89  Aligned_cols=101  Identities=17%  Similarity=0.159  Sum_probs=70.7

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV----------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~  238 (315)
                      ..++.+..+++||++.+.|.|..+|..++++||.  +++.+.+.++......|........                .+.
T Consensus       131 aIyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a  210 (277)
T 1tg6_A          131 AIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYA  210 (277)
T ss_dssp             HHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677889999999999999999999999999  9999999988765543322110000                011


Q ss_pred             hhc--CHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        239 RKV--PLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       239 ~~~--g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +..  ......+++..+..++++||+++||||++....+++
T Consensus       211 ~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~~~  251 (277)
T 1tg6_A          211 KHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQD  251 (277)
T ss_dssp             HHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC--
T ss_pred             HHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCcchhh
Confidence            111  223555555555668999999999999999763444

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=97.50  E-value=0.00011  Score=59.56  Aligned_cols=100  Identities=20%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH-----------------HH
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV-----------------AL  237 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~-----------------~l  237 (315)
                      ..+..+..+++|+++.+.|.|..+|..++++||.  +++.+.+++.+....-|.. +-...                 .+
T Consensus        79 ~I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~-G~a~di~~~a~~l~~~~~~~~~~y  157 (201)
T 3p2l_A           79 GVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFR-GQASDIEIHAKNILRIKDRLNKVL  157 (201)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEE-EEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677889999999999999999999999998  9999999887766543211 10000                 01


Q ss_pred             hhhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        238 TRKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       238 ~~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      .+..|  .....+++.....++++||+++|++|++..+.+++
T Consensus       158 a~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~~l  199 (201)
T 3p2l_A          158 AHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESREAI  199 (201)
T ss_dssp             HHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCSCC-
T ss_pred             HHHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCCHHHh
Confidence            11112  23555555545557999999999999998763433

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.46  E-value=0.0069  Score=56.19  Aligned_cols=83  Identities=16%  Similarity=0.256  Sum_probs=63.5

Q ss_pred             CCcEEEEEccccchhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH---
Q psy12573        186 PVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA---  261 (315)
Q Consensus       186 ~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a---  261 (315)
                      ..|+|+.+.|+|.|||.+....||++++.+. +++++       .            |+...+.  .+|+.+++++.   
T Consensus       169 ~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~-------a------------GP~vi~~--~~ge~v~~e~LGGa  227 (530)
T 3iav_A          169 VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFI-------T------------GPDVIKT--VTGEDVGFEELGGA  227 (530)
T ss_dssp             TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEES-------S------------CHHHHHH--HHCCCCCHHHHHBH
T ss_pred             CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEe-------c------------CHHHHHH--HhCCcCChhhcchH
Confidence            3899999999999999999999999998875 55544       1            4444443  35778888764   


Q ss_pred             ----HHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        262 ----YNAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       262 ----~~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                          ...|+++.++++.++..+.++++...|-
T Consensus       228 ~~h~~~sGv~d~va~de~~a~~~~r~~ls~lp  259 (530)
T 3iav_A          228 RTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLP  259 (530)
T ss_dssp             HHHHHTSCCCSEEESSHHHHHHHHHHHHHHSC
T ss_pred             HHHHhccCceeEEecChHHHHHHHHHHHHhcc
Confidence                5789999999883357778888877664

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=97.40  E-value=0.00021  Score=73.06  Aligned_cols=163  Identities=13%  Similarity=0.097  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCc-------ccccC--CCCccccchHHH--------------
Q psy12573         11 YYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPR-------HRLDA--GTFGTMGVGLGF--------------   66 (315)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~-------n~~~~--~~~~~mg~~~~~--------------   66 (315)
                      ...+++.|.+.++++.+|+.+ |.+++|.+++ ...|-+.       .++++  +..++||++||.              
T Consensus       816 e~~~ik~l~ql~g~~~iian~tGc~siw~~~~-~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~~~~~~  894 (1231)
T 2c42_A          816 ETPYVRVITQLFGERMFIANATGCSSIWGASA-PSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHLADLAA  894 (1231)
T ss_dssp             SHHHHHHHHHHHGGGEEEEECSSHHHHHHHBT-TCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCCeEEEecCchHHHHHhhc-ccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788999999999999999 9999999887 4333222       45555  345899999999              


Q ss_pred             -------------HH--------------------HHHHHh--------hhcCC----CCeEEEEEcCC-Cccccchhhh
Q psy12573         67 -------------AL--------------------AAALYC--------NHYAP----GKRVVCVQGDS-AFGFSGMELE  100 (315)
Q Consensus        67 -------------~l--------------------~~~l~~--------~~~d~----~~~vvvl~g~g-~~~~aG~Dl~  100 (315)
                                   +|                    +++|..        +..++    +.+||+|.||| .+.+..++|.
T Consensus       895 ~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~~eL~  974 (1231)
T 2c42_A          895 KALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGGLD  974 (1231)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTHHHHH
T ss_pred             HHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcchHHHH
Confidence                         55                    333321        00122    47899999999 5555677777


Q ss_pred             HHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc-c--c----------hhcc-c-----cChhhhhhhc
Q psy12573        101 TLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAA-G--C----------QLVA-T-----CDLAIATTAS  161 (315)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~-G--~----------~f~~-g-----~D~~~~~~~~  161 (315)
                      ++.+.                       ....++.++|--.+|. |  .          .|.. |     .|+..++.. 
T Consensus       975 ta~~~-----------------------~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a- 1030 (1231)
T 2c42_A          975 HVLAS-----------------------GEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT- 1030 (1231)
T ss_dssp             HHHHT-----------------------TCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT-
T ss_pred             HHHHh-----------------------CCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH-
Confidence            66541                       1122344444333332 1  0          0111 1     477777666 


Q ss_pred             CCCCcchh-h----HHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        162 KFSTPGYN-I----LVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       162 ~~~~~~~~-~----~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                       ++.+.+. .    ...++...+......+.|++..+.-+|..
T Consensus      1031 -~G~~~va~~~v~~~~~~l~~al~eAl~~~GP~lI~v~~~c~~ 1072 (1231)
T 2c42_A         1031 -YGYVYVATVSMGYSKQQFLKVLKEAESFPGPSLVIAYATCIN 1072 (1231)
T ss_dssp             -TSSSEEEEECTTTCHHHHHHHHHHHHHSSSCEEEEEECCCGG
T ss_pred             -CCCCEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEEeecCcc
Confidence             4555442 1    23345556666667888988888877764

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.32  E-value=0.0072  Score=56.12  Aligned_cols=84  Identities=30%  Similarity=0.298  Sum_probs=61.2

Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHH----
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQD----  260 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~----  260 (315)
                      -..|.|+.+.|+|.||+......||++++++.+++       |+.            |++..+..  +|+.++.++    
T Consensus       166 ~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i-------~~a------------GP~vI~~~--~ge~~~~e~lgga  224 (523)
T 1on3_A          166 GVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHM-------FIT------------GPQVIKSV--TGEDVTADELGGA  224 (523)
T ss_dssp             TTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEE-------ESS------------CHHHHHHH--HCCCCCHHHHHSH
T ss_pred             CCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEE-------Eec------------CHHHHHHH--hCCcCChHhcccH
Confidence            35899999999999999999999999999998544       433            44444432  466777642    


Q ss_pred             -HH--HcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        261 -AY--NAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       261 -a~--~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                       .+  +.|+++.++++..++.+.++++...+-
T Consensus       225 e~h~~~~G~vd~vv~d~~~~~~~~r~lL~~lp  256 (523)
T 1on3_A          225 EAHMAISGNIHFVAEDDDAAELIAKKLLSFLP  256 (523)
T ss_dssp             HHHHHTTCCCSEEESSHHHHHHHHHHHHHTSC
T ss_pred             HHHhhccCceEEEeCCHHHHHHHHHHHHHhcC
Confidence             22  689999999973456677777666554

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.31  E-value=0.013  Score=54.34  Aligned_cols=83  Identities=19%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH--
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA--  261 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a--  261 (315)
                      -..|+|+.+.|+|.|||......||++++.+. ++       +++.            |++..+.  .+|+.+++++.  
T Consensus       176 ~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~-------i~~a------------GP~vI~~--~~ge~v~~E~LGG  234 (531)
T 3n6r_B          176 GVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSY-------MFVT------------GPDVVKT--VTNEQVSAEELGG  234 (531)
T ss_dssp             TTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCB-------CBSS------------CHHHHHH--HHCCCCCHHHHHB
T ss_pred             CCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCce-------Eeec------------CHHHHHH--HhCCccChhhcch
Confidence            35899999999999999999889999999885 33       4442            4444444  35788888887  


Q ss_pred             -----HHcCccccccCCchHHHHHHHHHHHHH
Q psy12573        262 -----YNAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       262 -----~~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                           .+.|+++.++++.++..+.++++...|
T Consensus       235 a~~h~~~sG~~d~v~~~e~~a~~~~r~lls~L  266 (531)
T 3n6r_B          235 ATTHTRKSSVADAAFENDVEALAEVRRLVDFL  266 (531)
T ss_dssp             HHHHHHTTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             HHHHhhccCcceEEeCCHHHHHHHHHHHHHhc
Confidence                 789999999988334566666666544

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.24  E-value=0.027  Score=48.03  Aligned_cols=93  Identities=9%  Similarity=0.098  Sum_probs=62.9

Q ss_pred             HHHHHhcCCCcEEEEEccccchhhhHH-HhhcCeeeeeCCceeeCCCccCCCC-CCchHHHHhhhcCHHHHHHHHhcCCC
Q psy12573        178 LMLSILRHPVPILAIISGVAAAAGCQL-VATCDLAIATTASKFSTPGARHGIF-CSTPAVALTRKVPLGVVRSMTITGIP  255 (315)
Q Consensus       178 ~~~~l~~~~kpvIa~v~G~~~g~G~~l-~l~~d~~~a~~~a~~~~pe~~~Gl~-~~~~~~~l~~~~g~~~a~~~~~~g~~  255 (315)
                      .+..+.....|.|+.+.|++.||+... ++.+|++++.+.+.+       |+. |.+....+-+.+.          -..
T Consensus       186 ~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i-------~~aGP~vi~~~~~~~~~----------e~~  248 (285)
T 2f9i_B          186 SLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALI-------GFAGRRVIEQTINEKLP----------DDF  248 (285)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBE-------ESSCHHHHHHHHTSCCC----------TTT
T ss_pred             HHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEE-------EEcCHHHHHHHhcccch----------HhH
Confidence            444556678999999999999988665 789999999998544       443 2221111111111          011


Q ss_pred             CCHHHHHHcCccccccCCchHHHHHHHHHHHHH
Q psy12573        256 ISAQDAYNAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       256 ~~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                      -+++...+.|++|.+++. +++.+...++...+
T Consensus       249 ~~Ae~~~~~G~iD~Iv~~-~e~r~~l~~~L~~l  280 (285)
T 2f9i_B          249 QTAEFLLEHGQLDKVVHR-NDMRQTLSEILKIH  280 (285)
T ss_dssp             TBHHHHHHTTCCSEECCG-GGHHHHHHHHHHHT
T ss_pred             hhHHHHHhcCCccEEeCh-HHHHHHHHHHHHHh
Confidence            246667899999999998 78877777766554

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=97.22  E-value=0.0019  Score=52.35  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=71.3

Q ss_pred             HHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCC----CCCch--HH-----------H
Q psy12573        176 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGI----FCSTP--AV-----------A  236 (315)
Q Consensus       176 ~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl----~~~~~--~~-----------~  236 (315)
                      -..+..+...+.||...+.|.|...|..|+++|+.  |++.+.+++.+.....|.    ..+..  ..           .
T Consensus        86 laIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~i  165 (205)
T 4gm2_A           86 ISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEI  165 (205)
T ss_dssp             HHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            35667788889999999999999999999999995  999999998776555443    22221  00           1


Q ss_pred             HhhhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        237 LTRKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       237 l~~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +++.-|  .....+.+....-++++||+++|++|+|+..
T Consensus       166 ya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~  204 (205)
T 4gm2_A          166 ISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK  204 (205)
T ss_dssp             HHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred             HHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence            111112  2355556666667999999999999999875

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.13  E-value=0.026  Score=52.67  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=60.2

Q ss_pred             CCcEEEEEccccchhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHH----
Q psy12573        186 PVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQD----  260 (315)
Q Consensus       186 ~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~----  260 (315)
                      ..|.|+.+.|+|.||+.+....||++++.+. +++++       .            |++..+..  +|+.++.++    
T Consensus       180 ~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~-------a------------GP~vI~~~--~ge~v~~e~lgga  238 (548)
T 2bzr_A          180 VIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFI-------T------------GPDVIKTV--TGEEVTMEELGGA  238 (548)
T ss_dssp             TSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEES-------S------------CHHHHHHH--HCCCCCHHHHHBH
T ss_pred             CCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEe-------c------------cHHHHHHH--hCCcCChHhcccH
Confidence            4899999999999999999999999999986 55433       2            44444443  467777643    


Q ss_pred             -H--HHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        261 -A--YNAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       261 -a--~~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                       .  .+.|+++.++++..++.+.++++...+-
T Consensus       239 e~h~~~sG~~d~vv~d~~~~~~~~r~lls~lp  270 (548)
T 2bzr_A          239 HTHMAKSGTAHYAASGEQDAFDYVRELLSYLP  270 (548)
T ss_dssp             HHHHHTSSCCSEEESSHHHHHHHHHHHHTTSC
T ss_pred             HHHhhccCceeEEeCCHHHHHHHHHHHHHhcC
Confidence             2  2689999999962456666666665543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.12  E-value=0.02  Score=53.23  Aligned_cols=85  Identities=24%  Similarity=0.262  Sum_probs=61.8

Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCC-c-eeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHH--
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTA-S-KFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQD--  260 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~-a-~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~--  260 (315)
                      -..|.|+.+.|+|.||+......||++++++. + .+++       .            |++..+.  .+|+.++.++  
T Consensus       162 ~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~-------a------------GP~vI~~--~~ge~~~~e~lg  220 (522)
T 1x0u_A          162 GVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFV-------T------------GPEITKV--VLGEEVSFQDLG  220 (522)
T ss_dssp             TTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEES-------S------------CHHHHHH--TTCCCCCHHHHH
T ss_pred             CCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEe-------c------------CHHHHHH--HhCCcCChhhcc
Confidence            35899999999999999999999999999987 5 4433       2            3333333  3466777542  


Q ss_pred             ---H--HHcCccccccCCchHHHHHHHHHHHHHHh
Q psy12573        261 ---A--YNAGLITRVVSSNEELESETKVLTSAILE  290 (315)
Q Consensus       261 ---a--~~~Glv~~v~~~~~~~~~~~~~~~~~l~~  290 (315)
                         .  .+.|+++.++++..++.+.++++...+-.
T Consensus       221 gae~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp~  255 (522)
T 1x0u_A          221 GAVVHATKSGVVHFMVDSEQEAINLTKRLLSYLPS  255 (522)
T ss_dssp             BHHHHHHTTCCCSEEESCHHHHHHHHHHHHHHSCS
T ss_pred             hHHHHhhcCceeEEEeCCHHHHHHHHHHHHHhccc
Confidence               2  26899999999735577777777766543

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=97.00  E-value=0.023  Score=52.89  Aligned_cols=88  Identities=16%  Similarity=0.222  Sum_probs=63.1

Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeC-CceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHH
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATT-ASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ  259 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~-~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~  259 (315)
                      .+.....|+|+.+.|+|.|||......||+++..+ .       ..+++.            |++..+.  .+|+.++++
T Consensus       192 ~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~-------a~i~~a------------GP~vik~--~~ge~~~~e  250 (555)
T 3u9r_B          192 NMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQ-------ATIFLA------------GPPLVKA--ATGEVVSAE  250 (555)
T ss_dssp             HHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTT-------CBCBSS------------CHHHHHH--HHCCCCCHH
T ss_pred             HHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCC-------ceEEEc------------cHHHHHH--HhcCccChh
Confidence            44556799999999999999999999999987765 4       344442            3333333  367888888


Q ss_pred             HH-------HHcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        260 DA-------YNAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       260 ~a-------~~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                      +.       .+.|+++.++++.++..+.++++...|-
T Consensus       251 ~LGGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls~Lp  287 (555)
T 3u9r_B          251 ELGGADVHCKVSGVADHYAEDDDHALAIARRCVANLN  287 (555)
T ss_dssp             HHHBHHHHHHTTCSCSEEESSHHHHHHHHHHHHHTSC
T ss_pred             hccchhhhhhccCceeEEeCCHHHHHHHHHHHHHhCC
Confidence            76       6799999999883334455666655443

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.80  E-value=0.059  Score=50.07  Aligned_cols=84  Identities=23%  Similarity=0.285  Sum_probs=59.1

Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHH--
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQD--  260 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~--  260 (315)
                      ....|+|+.+.|+|.|||......||++++.+. ++       +++.            |++..+.  .+|+.++.++  
T Consensus       168 s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~-------i~~a------------GP~vi~~--~~ge~v~~e~lg  226 (527)
T 1vrg_A          168 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTAR-------MFIT------------GPNVIKA--VTGEEISQEDLG  226 (527)
T ss_dssp             TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCB-------CBSS------------CHHHHHH--HHCCCCCHHHHH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceE-------EEec------------CHHHHHH--HhCCCCCccccc
Confidence            456899999999999999999999999999986 44       3332            3333333  2466666542  


Q ss_pred             ---H-H-HcCccccccCCchHHHHHHHHHHHHH
Q psy12573        261 ---A-Y-NAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       261 ---a-~-~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                         . . +.|+++.++++..++.+.++++...+
T Consensus       227 gae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~l  259 (527)
T 1vrg_A          227 GAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYL  259 (527)
T ss_dssp             BHHHHHHTSCCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             cHHHHhhcccceEEEecCHHHHHHHHHHHHHhc
Confidence               2 2 68999999997244666666665544

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=96.52  E-value=0.0052  Score=53.63  Aligned_cols=96  Identities=13%  Similarity=0.099  Sum_probs=66.6

Q ss_pred             CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE
Q psy12573         57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI  136 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  136 (315)
                      .|+|+..........+...++ .+..+|.|.-.++++. |.+-...           .....+...+..+.+.++|+|++
T Consensus       138 ~G~~~~~~~~Ka~r~~~~A~~-~~~PlI~lvdt~Ga~~-g~~ae~~-----------g~~~~~a~~l~al~~~~vPvIav  204 (327)
T 2f9i_A          138 FGMAHPEGYRKALRLMKQAEK-FNRPIFTFIDTKGAYP-GKAAEER-----------GQSESIATNLIEMASLKVPVIAI  204 (327)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHH-TTCCEEEEEEESCSCC-CHHHHHT-----------THHHHHHHHHHHHHTCSSCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCc-chhhhhh-----------hhHHHHHHHHHHHHhCCCCEEEE
Confidence            356666655777777766655 4567888866555444 3221111           11223455667788999999999


Q ss_pred             EeeEEecccchhccccChhhhhhhcCCCC
Q psy12573        137 ISGVAAAAGCQLVATCDLAIATTASKFST  165 (315)
Q Consensus       137 v~G~~~g~G~~f~~g~D~~~~~~~~~~~~  165 (315)
                      |+|.+.|+|....+.||+.++.+.++|+.
T Consensus       205 V~G~a~GGGa~~~~~~D~via~~~A~~~v  233 (327)
T 2f9i_A          205 VIGEGGSGGALGIGIANKVLMLENSTYSV  233 (327)
T ss_dssp             EEEEEBHHHHHTTCCCSEEEEETTCBCBS
T ss_pred             EECCcChHHHHHHHCCCEEEEcCCceEee
Confidence            99999999998888999999988877764

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.38  E-value=0.017  Score=53.69  Aligned_cols=144  Identities=13%  Similarity=0.193  Sum_probs=87.8

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..+.+....+...|+|..++.    .|  |..|    ...        +..+........+..+.....|.|+.+.|.+.
T Consensus       349 ~ar~i~~a~~~~~Plv~l~ds----~G--~~~G----~~~--------E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~  410 (522)
T 1x0u_A          349 AARFIRFCDAFNIPLISLVDT----PG--YVPG----TDQ--------EYKGIIRHGAKMLYAFAEATVPKITVIVRKSY  410 (522)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEE----CC--BCCS----HHH--------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEE
T ss_pred             HHHHHHHHhhCCCCEEEEecC----CC--CCCc----hHH--------HHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcc
Confidence            334445556788899988775    22  2222    111        11144555566777888899999999999999


Q ss_pred             hhhhHHHhh----cCeeeeeCCceeeCCCccCCCCCCchHH-HHhh-hcC---------HHHHHHHHhcCCCCCHHHHHH
Q psy12573        199 AAGCQLVAT----CDLAIATTASKFSTPGARHGIFCSTPAV-ALTR-KVP---------LGVVRSMTITGIPISAQDAYN  263 (315)
Q Consensus       199 g~G~~l~l~----~d~~~a~~~a~~~~pe~~~Gl~~~~~~~-~l~~-~~g---------~~~a~~~~~~g~~~~a~~a~~  263 (315)
                      |||......    +|++++.+.++++       +....+.. .+.+ .+.         .....+.-  ...-++..+.+
T Consensus       411 GGg~~~~a~~a~~~D~v~a~p~A~i~-------v~gpegaa~Il~r~~i~~~~d~~~~~~~l~~~y~--~~~~~~~~~~~  481 (522)
T 1x0u_A          411 GGAHIAMSIKSLGADLVYAWPTAEIA-------VTGPEGAVRILYRKEIQQASNPDDVLKQRIAEYR--KLFANPYWAAE  481 (522)
T ss_dssp             HHHHHHTCCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTSSSSSSSSSSSSSSHHHHHHHH--HHHSSSHHHHH
T ss_pred             cHHHHHhcccccCCCEEEEeCCCEEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHH--HhcCCHHHHHh
Confidence            988766544    9999999985554       33222111 1111 111         11111110  01135567899


Q ss_pred             cCccccccCCchHHHHHHHHHHHHHHh
Q psy12573        264 AGLITRVVSSNEELESETKVLTSAILE  290 (315)
Q Consensus       264 ~Glv~~v~~~~~~~~~~~~~~~~~l~~  290 (315)
                      .|+||.+++. .++.+......+.+..
T Consensus       482 ~G~iD~II~p-~~tR~~L~~~L~~~~~  507 (522)
T 1x0u_A          482 KGLVDDVIEP-KDTRRVIVAGLEMLKT  507 (522)
T ss_dssp             TTSSSEECCG-GGHHHHHHHHHHHHTT
T ss_pred             cCCCcEeECH-HHHHHHHHHHHHHHhh
Confidence            9999999998 8888777777666543

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.29  E-value=0.034  Score=51.66  Aligned_cols=145  Identities=12%  Similarity=0.126  Sum_probs=87.1

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .+.+....+...|+|..++.      .+|..|.+-            |..+........+..+.....|+|+.|-|.+.|
T Consensus       355 ar~i~~a~~~~~Plv~lvDt------pG~~~G~~~------------E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~g  416 (527)
T 1vrg_A          355 ARFIRFLDAFNIPILTFVDT------PGYLPGVAQ------------EHGGIIRHGAKLLYAYSEATVPKITVILRKAYG  416 (527)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE------CCBCCCHHH------------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEH
T ss_pred             HHHHHHHhhcCCCeEEEecC------CCCcCchhh------------HHhHHHHHHHHHHHHHhcCCCCEEEEEeCCccc
Confidence            34444456788899998875      223222111            111455555667778888999999999999988


Q ss_pred             hhhHHHhh----cCeeeeeCCceeeCCCccCCCCCCchHHH--Hhhhc----CHHHH-HHHHh--cCCCCCHHHHHHcCc
Q psy12573        200 AGCQLVAT----CDLAIATTASKFSTPGARHGIFCSTPAVA--LTRKV----PLGVV-RSMTI--TGIPISAQDAYNAGL  266 (315)
Q Consensus       200 ~G~~l~l~----~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~--l~~~~----g~~~a-~~~~~--~g~~~~a~~a~~~Gl  266 (315)
                      ||..-+..    +|++++-+.       .+++..+..+...  +...+    .+... +++.-  .-...++..+.+.|+
T Consensus       417 Gg~~am~~~~~~~d~~~a~p~-------a~~~Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~~~~g~  489 (527)
T 1vrg_A          417 GAYIAMGSKHLGADMVLAWPS-------AEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGY  489 (527)
T ss_dssp             HHHHHTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTS
T ss_pred             HHHHHhcCCCCCCCEEEEcCC-------CeEEecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHHcCC
Confidence            76654433    788777777       5555553333221  11111    11111 11221  111356788999999


Q ss_pred             cccccCCchHHHHHHHHHHHHHHh
Q psy12573        267 ITRVVSSNEELESETKVLTSAILE  290 (315)
Q Consensus       267 v~~v~~~~~~~~~~~~~~~~~l~~  290 (315)
                      |+.+++. .+..+......+.+..
T Consensus       490 iD~II~p-~~tR~~l~~~L~~l~~  512 (527)
T 1vrg_A          490 VDMVIDP-RETRKYIMRALEVCET  512 (527)
T ss_dssp             SSEECCG-GGHHHHHHHHHHHHTT
T ss_pred             CCeeeCH-HHHHHHHHHHHHHHhc
Confidence            9999998 7777766666665543

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=96.21  E-value=0.0076  Score=52.80  Aligned_cols=96  Identities=13%  Similarity=0.058  Sum_probs=66.2

Q ss_pred             CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE
Q psy12573         57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI  136 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  136 (315)
                      .|+|+..........+..+++ .+..+|.|.-.++++. |......           .....+...+..+.+.++|+|++
T Consensus       152 ~G~~~~~~~~Ka~r~~~~A~~-~~lPlI~lvDt~Ga~~-g~~aE~~-----------g~~~~~a~~l~al~~~~vPvIav  218 (339)
T 2f9y_A          152 FGMPAPEGYRKALRLMQMAER-FKMPIITFIDTPGAYP-GVGAEER-----------GQSEAIARNLREMSRLGVPVVCT  218 (339)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHH-TTCCEEEEEEESCSCC-SHHHHHT-----------THHHHHHHHHHHHHTCSSCEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCcc-chHHHHH-----------HHHHHHHHHHHHHHhCCCCEEEE
Confidence            366666666777777766655 4577888866655444 2221111           11223455667788999999999


Q ss_pred             EeeEEecccchhccccChhhhhhhcCCCC
Q psy12573        137 ISGVAAAAGCQLVATCDLAIATTASKFST  165 (315)
Q Consensus       137 v~G~~~g~G~~f~~g~D~~~~~~~~~~~~  165 (315)
                      |+|.+.|+|....+.||+.++.+.++|+.
T Consensus       219 V~G~a~GGGa~~~~~~D~via~p~A~~~v  247 (339)
T 2f9y_A          219 VIGEGGSGGALAIGVGDKVNMLQYSTYSV  247 (339)
T ss_dssp             EEEEEEHHHHHTTCCCSEEEECTTCEEES
T ss_pred             EeCCcCcHHHHHHhccCeeeecCCCEEEe
Confidence            99999999988888899999888766653

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=96.16  E-value=0.037  Score=51.36  Aligned_cols=145  Identities=8%  Similarity=0.118  Sum_probs=87.9

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .+.+....+...|+|..++-      .+|..|.+-            |..+.......++..+.....|+|+.|-|.+.|
T Consensus       351 ar~i~~~~~~~iPlv~lvDt------pGf~~G~~~------------E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~G  412 (523)
T 1on3_A          351 AEFVNFCDSFNIPLVQLVDV------PGFLPGVQQ------------EYGGIIRHGAKMLYAYSEATVPKITVVLRKAYG  412 (523)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE------CCBCCCHHH------------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEH
T ss_pred             HHHHHHHHhcCCCeEEEEeC------CCcCcchHH------------HHhhHHHHHHHHHHHHhcCCCCEEEEEeCCccc
Confidence            34444456788899998875      233333211            112555566677778889999999999999998


Q ss_pred             hhhHHHhh----cCeeeeeCCceeeCCCccCCCCCCchHHH-H-hhhc----CHHHH-HHHHh--cCCCCCHHHHHHcCc
Q psy12573        200 AGCQLVAT----CDLAIATTASKFSTPGARHGIFCSTPAVA-L-TRKV----PLGVV-RSMTI--TGIPISAQDAYNAGL  266 (315)
Q Consensus       200 ~G~~l~l~----~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~-l-~~~~----g~~~a-~~~~~--~g~~~~a~~a~~~Gl  266 (315)
                      ||..-+..    +|++++-+.       .+++..+..+... + ...+    -.... +++.-  .-...++..+.+.|+
T Consensus       413 gg~~am~~~~~~~d~~~a~p~-------a~~~Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~~~p~~~a~~g~  485 (523)
T 1on3_A          413 GSYLAMCNRDLGADAVYAWPS-------AEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQ  485 (523)
T ss_dssp             HHHHTTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTS
T ss_pred             HHHHHhcccCCCCCEEEEcCC-------CeEEecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhhCCHHHHHhcCC
Confidence            77765544    777777666       5556553333221 1 1110    11111 11221  111256678899999


Q ss_pred             cccccCCchHHHHHHHHHHHHHHh
Q psy12573        267 ITRVVSSNEELESETKVLTSAILE  290 (315)
Q Consensus       267 v~~v~~~~~~~~~~~~~~~~~l~~  290 (315)
                      |+.+++. .+..+......+.+..
T Consensus       486 iD~II~p-~~tR~~l~~~L~~l~~  508 (523)
T 1on3_A          486 VDDVIDP-ADTRRKIASALEMYAT  508 (523)
T ss_dssp             SSEECCG-GGHHHHHHHHHHHGGG
T ss_pred             CCEeeCH-HHHHHHHHHHHHHHhc
Confidence            9999998 7777766666655543

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=96.06  E-value=0.027  Score=53.91  Aligned_cols=86  Identities=22%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhhCC-CCceEEeCCChhhHhhhhh------hccCCCccc-----------ccCCCCccccchHHHHHHHHH
Q psy12573         11 YYAAIHAVQVSIP-DNCIIVGEGANTMDIGRSL------LLNNLPRHR-----------LDAGTFGTMGVGLGFALAAAL   72 (315)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~------l~~~~~~n~-----------~~~~~~~~mg~~~~~~l~~~l   72 (315)
                      ...+...|...+. +++.++.+-+|+.|...+.      +......+.           .+....++||+++|.+++.++
T Consensus        58 ~v~l~~aL~~~~~~~~D~~v~~~GH~~y~~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~Al  137 (629)
T 2o1x_A           58 AVDIITALHYVLDSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMAL  137 (629)
T ss_dssp             THHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCeEEecCchHHHHHHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHH
Confidence            3455556655554 6777777744543332221      111221111           134556999999999999999


Q ss_pred             HhhhcCCCCeEEEEEcCCCccccch
Q psy12573         73 YCNHYAPGKRVVCVQGDSAFGFSGM   97 (315)
Q Consensus        73 ~~~~~d~~~~vvvl~g~g~~~~aG~   97 (315)
                      +.--..++.+||++.|||.+ ..|.
T Consensus       138 A~k~~~~~~~Vv~v~GDG~~-~~G~  161 (629)
T 2o1x_A          138 ARDAQGKDFHVAAVIGDGSL-TGGM  161 (629)
T ss_dssp             HHHHHTCCCCEEEEEETTGG-GSHH
T ss_pred             HHHHhCCCCeEEEEEchhhh-hccH
Confidence            85434577899999999973 4454

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=95.92  E-value=0.053  Score=50.58  Aligned_cols=144  Identities=13%  Similarity=0.204  Sum_probs=85.8

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .+.+....+...|+|..++.      .+|..|.+-            |..+........+..+.....|+|+.|-|.+.|
T Consensus       372 ar~i~~a~~~~iPlv~lvDt------~Gf~~G~~~------------E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~G  433 (548)
T 2bzr_A          372 ARFVRTCDCFNIPIVMLVDV------PGFLPGTDQ------------EYNGIIRRGAKLLYAYGEATVPKITVITRKAYG  433 (548)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE------CCBCCCHHH------------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEH
T ss_pred             HHHHHHHHhcCCCEEEEeec------cCCCCChHH------------HHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcch
Confidence            34445556788899998875      233333221            112455555667777888999999999999998


Q ss_pred             hhhHHHh----hcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCH-----------HHHHHHHhc--CCCCCHHHHH
Q psy12573        200 AGCQLVA----TCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPL-----------GVVRSMTIT--GIPISAQDAY  262 (315)
Q Consensus       200 ~G~~l~l----~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~-----------~~a~~~~~~--g~~~~a~~a~  262 (315)
                      ||..-+.    .+|++++-+.+       ++++....+...+..+...           ...+++...  -...++..+.
T Consensus       434 gg~~am~~~~~~~d~~~awp~a-------~i~Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~y~~~~~~p~~~a  506 (548)
T 2bzr_A          434 GAYCVMGSKDMGCDVNLAWPTA-------QIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAA  506 (548)
T ss_dssp             HHHHHTTCGGGTCSEEEECTTC-------EEESSCHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHSBSHHHH
T ss_pred             HHHHHhccccCCCCEEEEcCCC-------EEEecCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHHHHHhhCCHHHHH
Confidence            7766543    38888887774       4454433322221111110           111112210  0113456789


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHH
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                      +.|+++.+++. .+..+......+.+.
T Consensus       507 ~~g~iD~II~p-~~tR~~l~~~L~~l~  532 (548)
T 2bzr_A          507 ERGYVGAVIPP-SHTRGYIGTALRLLE  532 (548)
T ss_dssp             HTTSSSEECCG-GGHHHHHHHHHHHTT
T ss_pred             hcCCCceeeCH-HHHHHHHHHHHHHHh
Confidence            99999999998 777666655555543

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=95.91  E-value=0.024  Score=53.71  Aligned_cols=48  Identities=8%  Similarity=0.039  Sum_probs=37.5

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR  225 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~  225 (315)
                      ..+..+....|||+|.+.+ +.-+|..|+.+||.+++.+.+.++.....
T Consensus       111 ~~i~~~k~~gkpvva~~~~-aas~~y~lAsaad~i~~~P~~~vg~~g~~  158 (593)
T 3bf0_A          111 KALKEFRDSGKPVYAVGEN-YSQGQYYLASFANKIWLSPQGVVDLHGFA  158 (593)
T ss_dssp             HHHHHHHHTTCCEEEEESC-EEHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred             HHHHHHHhcCCeEEEEEcc-chhHHHHHHHhCCEEEECCCceEEEeccc
Confidence            4444555567999998876 45578999999999999999888775553

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=95.76  E-value=0.11  Score=48.83  Aligned_cols=147  Identities=17%  Similarity=0.206  Sum_probs=91.4

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      .+.+....+...|++..++-      .+|..|.+-            |..+.......++..+.....|+|+.|.|.+.|
T Consensus       396 arfi~~c~~~~iPlv~lvDt------pGf~~G~~~------------E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~G  457 (587)
T 1pix_A          396 NEFVTLCARDRLPIVWIQDT------TGIDVGNDA------------EKAELLGLGQSLIYSIQTSHIPQFEITLRKGTA  457 (587)
T ss_dssp             HHHHHHHHHTTCCEEEEECC------CEECCSHHH------------HHTTHHHHHHHHHHHHHTCCCCEEEEECSEEET
T ss_pred             HHHHHHhhcCCCCeEEEecC------CCCCCcHHH------------HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCcc
Confidence            34444456778899988764      233333211            112566666778888999999999999999988


Q ss_pred             hhhHHHhh-----c--CeeeeeCCceeeCCCccCCCCCCchHH--HHhhhcCH---------H---HHHHHHh-cCCCCC
Q psy12573        200 AGCQLVAT-----C--DLAIATTASKFSTPGARHGIFCSTPAV--ALTRKVPL---------G---VVRSMTI-TGIPIS  257 (315)
Q Consensus       200 ~G~~l~l~-----~--d~~~a~~~a~~~~pe~~~Gl~~~~~~~--~l~~~~g~---------~---~a~~~~~-~g~~~~  257 (315)
                      || .++++     +  |++++-+.       .++++.+..+..  .+......         .   ..+++.. --+..+
T Consensus       458 gg-~~am~~~~~~~~~d~~~a~p~-------A~~~Vm~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~  529 (587)
T 1pix_A          458 AA-HYVLGGPQGNDTNAFSIGTAA-------TEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSR  529 (587)
T ss_dssp             TH-HHHTTCTTCTTTEEEEEECTT-------CEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             HH-HHHhcCcccCcccceeeeccC-------CeEecCCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHHHHHHhCC
Confidence            77 45555     4  88777777       455555333222  11111100         0   0111111 011478


Q ss_pred             HHHHHHcCccccccCCchHHHHHHHHHHHHHHhCCH
Q psy12573        258 AQDAYNAGLITRVVSSNEELESETKVLTSAILENSR  293 (315)
Q Consensus       258 a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~  293 (315)
                      +..+.+.|+++.+++. .+.........+.+.+++.
T Consensus       530 p~~aa~~g~iD~VI~p-~~tR~~l~~~L~~~~~~~~  564 (587)
T 1pix_A          530 PKVCAELGLVDEIVDM-NKIRGYVEAFTEAAYQNPE  564 (587)
T ss_dssp             HHHHHHHTSSSEECCT-TTHHHHHHHHHHHHTTSCS
T ss_pred             HHHHHhcCCCccccCH-HHHHHHHHHHHHHHhcCCc
Confidence            8889999999999998 8888887777777776653

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.68  E-value=0.15  Score=47.82  Aligned_cols=106  Identities=13%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCcc--CCCCCCchHHHHhhh---cCHHHHHHHHhcCCC
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGAR--HGIFCSTPAVALTRK---VPLGVVRSMTITGIP  255 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~--~Gl~~~~~~~~l~~~---~g~~~a~~~~~~g~~  255 (315)
                      .+.....|+|+.+.|+|.|||...++++|++++.+.+++++..-+  -|+-|.+  ...+.-   +......+-..+.+.
T Consensus       177 ~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g--~~~~~~~~~~~~~~~ge~~vs~ee  254 (588)
T 3gf3_A          177 ELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG--YIDDEAAEQIIAAQIENSKLKVPA  254 (588)
T ss_dssp             HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC-----------------CHHHHHHHHHHHHTTCCC
T ss_pred             HHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc--cccccchhhhhhhhccccccChhh
Confidence            345568999999999999999888888999999998776653322  1111110  001100   001111222135666


Q ss_pred             CCHHHHH--HcCccccccCCchHHHHHHHHHHHHH
Q psy12573        256 ISAQDAY--NAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       256 ~~a~~a~--~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                      +...+.+  ..|.++.++++.++..+.++++...|
T Consensus       255 LGGa~~h~~~sGv~d~~a~de~~al~~~r~~ls~L  289 (588)
T 3gf3_A          255 PGSVPIHYDETGFFREVYQNDLGVIDGIKKYISYL  289 (588)
T ss_dssp             TTBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred             ccchhhhccccccceEEeCCHHHHHHHHHHHHHhC
Confidence            7666654  58999999988334566666666554

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=95.27  E-value=0.0031  Score=52.74  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=36.9

Q ss_pred             CCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh
Q psy12573        129 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN  169 (315)
Q Consensus       129 ~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~  169 (315)
                      .++|+|++++|.+.|+|..+++.||++++.+.+.++.+.+.
T Consensus        78 ~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~  118 (240)
T 3rst_A           78 TKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVI  118 (240)
T ss_dssp             HCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCE
T ss_pred             CCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEecccee
Confidence            68999999999999999999999999999998888777543

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=94.74  E-value=0.19  Score=47.97  Aligned_cols=41  Identities=27%  Similarity=0.501  Sum_probs=32.7

Q ss_pred             CCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccch
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGM   97 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~   97 (315)
                      ..++||+++|.+++.+++.--..++.+||++.|||.+ ..|.
T Consensus       119 ~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~-~~G~  159 (621)
T 2o1s_A          119 SVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAI-TAGM  159 (621)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGG-GSHH
T ss_pred             CCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhh-hccH
Confidence            3599999999999999985434467899999999974 4444

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.74  E-value=0.19  Score=46.55  Aligned_cols=142  Identities=11%  Similarity=0.142  Sum_probs=83.6

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      +.+....+...|+|..++-      ..|..|.+-            |..+.......++..+.....|+|+.|.|.+.||
T Consensus       364 rfi~lcd~~~iPlv~lvDt------pGf~~G~~~------------E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Gg  425 (531)
T 3n6r_B          364 RFVRFCDAFEIPLLTLIDV------PGFLPGTSQ------------EYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGG  425 (531)
T ss_dssp             HHHHHHHHTTCCEEEEEEE------CSBCCSHHH------------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHH
T ss_pred             HHHHHhhccCCCEEEEeCC------CCCCCCHHH------------HHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccch
Confidence            3444445577899988875      233332111            1125666667788888999999999999999987


Q ss_pred             hhHHHhh----cCeeeeeCCceeeCCCccCCCCCCchHH--HHhhhcCH-HHHHHHH--hcCCCCCHHHHHHcCcccccc
Q psy12573        201 GCQLVAT----CDLAIATTASKFSTPGARHGIFCSTPAV--ALTRKVPL-GVVRSMT--ITGIPISAQDAYNAGLITRVV  271 (315)
Q Consensus       201 G~~l~l~----~d~~~a~~~a~~~~pe~~~Gl~~~~~~~--~l~~~~g~-~~a~~~~--~~g~~~~a~~a~~~Glv~~v~  271 (315)
                      |..-+..    +|++++-+.+       +++..+..++.  .+.+.+.. ...++..  +.-+..++..+.+.|++|.|+
T Consensus       426 g~~am~~~~~~~d~~~awp~A-------~i~Vm~pegaa~Il~r~~~~~~~~~~~~~~~y~~~~~~p~~aa~~~~vD~vI  498 (531)
T 3n6r_B          426 AYVVMSSKHLRADFNYAWPTA-------EVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGFVDEVI  498 (531)
T ss_dssp             HHHHTTCGGGTCSEEEECTTC-------EEESSCHHHHHHHHCCTTTTSTTHHHHHHHHHHHHHSSSHHHHHHTSSSEEC
T ss_pred             hhhhccCccCCCCeEEEcCCc-------eEecCCHHHHHHHHhcccccchhHHHHHHHHHHHHhcCHHHHHhcCccCccc
Confidence            7654443    8888877774       44544322221  12221210 1011111  111224556788999999999


Q ss_pred             CCchHHHHHHHHHHHHH
Q psy12573        272 SSNEELESETKVLTSAI  288 (315)
Q Consensus       272 ~~~~~~~~~~~~~~~~l  288 (315)
                      +. .+.........+.+
T Consensus       499 dP-~~TR~~l~~~l~~~  514 (531)
T 3n6r_B          499 QP-RSTRKRVARAFASL  514 (531)
T ss_dssp             CG-GGHHHHHHHHHHTT
T ss_pred             CH-HHHHHHHHHHHHHH
Confidence            98 77766555444443

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=94.71  E-value=0.16  Score=47.03  Aligned_cols=142  Identities=13%  Similarity=0.189  Sum_probs=85.3

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      +.+....+...|+|..++-      .+|..|.+-            |..+.......++..+.....|+|+.|.|.+.||
T Consensus       358 rfi~~c~~~~iPlv~lvDt------pGf~~G~~~------------E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GG  419 (530)
T 3iav_A          358 RFVRTCDAFNVPVLTFVDV------PGFLPGVDQ------------EHDGIIRRGAKLIFAYAEATVPLITVITRKAFGG  419 (530)
T ss_dssp             HHHHHHHHTTCCEEEEEEE------CCBCCCHHH------------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHH
T ss_pred             HHHHHHHhcCCCEEEEeeC------CCCCccHHH------------HHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchH
Confidence            3444445677899988875      224333221            1125666677788888999999999999999986


Q ss_pred             hhHHHhh-----cCeeeeeCCceeeCCCccCCCCCCchHH--HHhhhcC------HHHHHHHHhc--CCCCCHHHHHHcC
Q psy12573        201 GCQLVAT-----CDLAIATTASKFSTPGARHGIFCSTPAV--ALTRKVP------LGVVRSMTIT--GIPISAQDAYNAG  265 (315)
Q Consensus       201 G~~l~l~-----~d~~~a~~~a~~~~pe~~~Gl~~~~~~~--~l~~~~g------~~~a~~~~~~--g~~~~a~~a~~~G  265 (315)
                      |. ++++     +|++++-+.+       +++..+..++.  .+.+.+.      ...-.++...  -+..++..|.+.|
T Consensus       420 a~-~am~~~~~~~d~~~awp~a-------~~~Vm~~egaa~il~r~~~~~~~~d~~~~~~~~~~~y~~~~~~p~~aa~~~  491 (530)
T 3iav_A          420 AY-VVMGSKHLGADLNLAWPTA-------QIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERG  491 (530)
T ss_dssp             HH-HHTTCGGGTCSEEEECTTC-------EEESSCHHHHHHHHTSTTTSTTCTTCHHHHHHHHHHHHHHHSSSHHHHHTT
T ss_pred             HH-HHhcCCCCCCCEEEEcCCc-------eEecCCHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhcCCHHHHHhcC
Confidence            55 4444     6888877774       44544322221  1211111      1111122111  1123667788999


Q ss_pred             ccccccCCchHHHHHHHHHHHHHH
Q psy12573        266 LITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       266 lv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                      ++|.|++. .+.........+.+.
T Consensus       492 ~vD~VIdP-~~TR~~l~~~l~~~~  514 (530)
T 3iav_A          492 YVDAVIMP-SDTRRHIVRGLRQLR  514 (530)
T ss_dssp             SSSEECCG-GGHHHHHHHHHHHHT
T ss_pred             CCCcccCH-HHHHHHHHHHHHHHh
Confidence            99999998 777766655555444

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=94.60  E-value=0.13  Score=46.12  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573         57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF   92 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~   92 (315)
                      .++||+++|.+++.+++.-...++.++|++.|||.+
T Consensus       161 ~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~  196 (400)
T 2bfd_A          161 SSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAA  196 (400)
T ss_dssp             CSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGG
T ss_pred             CccccccccHHHHHHHhhhhhCCCCeEEEEECchhh
Confidence            389999999999999986434457899999999974

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=94.39  E-value=0.11  Score=49.94  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=54.3

Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCC--CHHHH-
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPI--SAQDA-  261 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~--~a~~a-  261 (315)
                      ...|+|+.|.|+|.|||.++...||++++.++       ..+++.            |+...+..  +|+.+  +.++. 
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~-------s~iflt------------GP~vIk~~--tGeeV~~s~eeLG  303 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG-------QPIILT------------GAPAINKM--LGREVYTSNLQLG  303 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETT-------CCEESS------------CHHHHHHH--HTSCCCSCTHHHH
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECC-------ceEEEe------------CHHHHHHH--hCCccccCchhcc
Confidence            46799999999999999999999999999988       334443            33333332  46655  44332 


Q ss_pred             -----HHcCccccccCCchHHHHHHHHHH
Q psy12573        262 -----YNAGLITRVVSSNEELESETKVLT  285 (315)
Q Consensus       262 -----~~~Glv~~v~~~~~~~~~~~~~~~  285 (315)
                           .+.|.++.++++..+..+.++++.
T Consensus       304 GA~vh~~sGvad~va~dd~eal~~ir~lL  332 (758)
T 3k8x_A          304 GTQIMYNNGVSHLTAVDDLAGVEKIVEWM  332 (758)
T ss_dssp             SHHHHTTTTSSSEEESSHHHHHHHHHHHH
T ss_pred             hhhHHHhcCCeeEEecCHHHHHHHHHHHH
Confidence                 467999999987233334444443

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=94.31  E-value=0.36  Score=43.32  Aligned_cols=35  Identities=20%  Similarity=0.107  Sum_probs=30.2

Q ss_pred             CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573         57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA   91 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~   91 (315)
                      .++||+++|.+++.+++.-...++..+|++.|||.
T Consensus       180 ~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa  214 (407)
T 1qs0_A          180 SGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGA  214 (407)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGG
T ss_pred             ccccccchhHHHHHHHHHHHhCCCCEEEEEECCch
Confidence            48999999999999998644456789999999997

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=94.27  E-value=0.32  Score=43.09  Aligned_cols=37  Identities=16%  Similarity=0.020  Sum_probs=31.2

Q ss_pred             CCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF   92 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~   92 (315)
                      ..++||+++|.++|.+++.-...++..+|++.|||.+
T Consensus       140 ~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~  176 (368)
T 1w85_A          140 PQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGT  176 (368)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGG
T ss_pred             CccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhh
Confidence            3489999999999999986444567899999999974

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=93.77  E-value=0.39  Score=42.53  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             CCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCc
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAF   92 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~   92 (315)
                      ..+.+|.++|.+++.++..-...++.++|++.|||.+
T Consensus       142 ~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~  178 (367)
T 1umd_A          142 VASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGAT  178 (367)
T ss_dssp             CCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGG
T ss_pred             CCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEccccc
Confidence            3478888888888888875444577899999999974

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=93.25  E-value=0.22  Score=48.27  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCC--CHHH--
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPI--SAQD--  260 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~--~a~~--  260 (315)
                      ...|+|+.|.|++.|||.++...||++++.+.+       .+++.            |+...+.  .+|+.+  +.++  
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a-------~i~lt------------Gp~vi~~--~~Ge~vy~s~e~LG  316 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENS-------HIILT------------GATALNK--VLGRDVYTSNNQLG  316 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTC-------EEESS------------CHHHHHH--HHSSCCCSCHHHHH
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccc-------cEEec------------CHHHHHH--hcCCcccCChhhhc
Confidence            367999999999999999999999999999883       33443            2222222  234444  3322  


Q ss_pred             ----HHHcCccccccCCchHHHHHHHHH
Q psy12573        261 ----AYNAGLITRVVSSNEELESETKVL  284 (315)
Q Consensus       261 ----a~~~Glv~~v~~~~~~~~~~~~~~  284 (315)
                          ..+.|.++.++++..+..+.++++
T Consensus       317 Ga~v~~~~Gv~d~vv~dd~ea~~~ir~~  344 (793)
T 2x24_A          317 GVQIMHHNGVSHVTVPDDFEGVCTILEW  344 (793)
T ss_dssp             SHHHHTTTTSCSEEESSHHHHHHHHHHH
T ss_pred             cHHHHHhcCceEEEeCCHHHHHHHHHHH
Confidence                457899999998723333344443

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=92.79  E-value=0.1  Score=42.37  Aligned_cols=81  Identities=16%  Similarity=0.164  Sum_probs=54.5

Q ss_pred             ccchHHHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573         60 MGVGLGFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII  137 (315)
Q Consensus        60 mg~~~~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  137 (315)
                      ++-.....+.+.|..++.+++.+.|+|  -+-|+..++|.                       .+.+.+...++|+++.+
T Consensus        36 I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~-----------------------~I~~~i~~~~~pV~~~v   92 (208)
T 2cby_A           36 VNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGM-----------------------AIYDTMVLAPCDIATYA   92 (208)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHH-----------------------HHHHHHHHCSSCEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHH-----------------------HHHHHHHhcCCCEEEEE
Confidence            344455888888888876665555544  44454333332                       23344556778999999


Q ss_pred             eeEEecccchhccccCh--hhhhhhcCC
Q psy12573        138 SGVAAAAGCQLVATCDL--AIATTASKF  163 (315)
Q Consensus       138 ~G~~~g~G~~f~~g~D~--~~~~~~~~~  163 (315)
                      .|.+.++|..+.+++|.  +.+.+.+.+
T Consensus        93 ~g~AaS~g~~Ia~agd~~~~~a~p~a~i  120 (208)
T 2cby_A           93 MGMAASMGEFLLAAGTKGKRYALPHARI  120 (208)
T ss_dssp             EEEEETHHHHHHHTSCTTCEEECTTCEE
T ss_pred             CcEeHHHHHHHHhCCCcCCEEEcCCcEE
Confidence            99999999999999997  566555443

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=91.99  E-value=1.6  Score=38.51  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=29.7

Q ss_pred             CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC
Q psy12573         57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA   91 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~   91 (315)
                      .++||+++|.+++.+++.-...++..+|++.|||.
T Consensus       139 ~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa  173 (365)
T 2ozl_A          139 NGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGA  173 (365)
T ss_dssp             CCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTG
T ss_pred             cchhhhhhHHHHHHHHHHHhcCCCceEEEEECchh
Confidence            37899999999999998644445788999999997

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=91.83  E-value=1.2  Score=41.89  Aligned_cols=146  Identities=18%  Similarity=0.194  Sum_probs=88.6

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..+.+....+...|+|..++-      .+|..|.+-            |..+.......++..+..+..|+|..|.|.+.
T Consensus       397 aarfi~lcd~f~iPlv~lvDt------pGf~~G~~a------------E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~  458 (588)
T 3gf3_A          397 MNEFVTLCARDRIPLIWLQDT------TGIDVGDEA------------EKAELLGLGQSLIYSIENSKLPSLEITIRKAS  458 (588)
T ss_dssp             HHHHHHHHHHTTCCEEEEECC------CEECCSHHH------------HHTTHHHHHHHHHHHHHHHCSCEEEEESSEEE
T ss_pred             HHHHHHHhhhcCCCeEEEecC------CCCCCCHHH------------HHHHHHHHHHHHHHHHHhCCCCEEEEEcCCcc
Confidence            334444555678899988764      234333221            11256666677888889999999999999998


Q ss_pred             hhhhHHHhhc-------CeeeeeCCceeeCCCccCCCCCCchH--HHHhhhcC----------H--HHHHHHHh-cCCCC
Q psy12573        199 AAGCQLVATC-------DLAIATTASKFSTPGARHGIFCSTPA--VALTRKVP----------L--GVVRSMTI-TGIPI  256 (315)
Q Consensus       199 g~G~~l~l~~-------d~~~a~~~a~~~~pe~~~Gl~~~~~~--~~l~~~~g----------~--~~a~~~~~-~g~~~  256 (315)
                      |||. +++++       |++++-+.       .+++..+..++  ..+.+.+.          .  ...+++.- --+..
T Consensus       459 Ggg~-~am~~~~~~~~~~~~~awp~-------A~~sVm~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  530 (588)
T 3gf3_A          459 AAAH-YVLGGPQGNNTNVFSIGTGA-------CEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMYTDKS  530 (588)
T ss_dssp             TTHH-HHTTCTTCTTTEEEEEECTT-------CEEESSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTT
T ss_pred             HHHH-HHhcccccCCccceEEECCC-------ceEEeCCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHHHHHhC
Confidence            8655 44543       25555555       66666643322  12221111          0  01111111 01135


Q ss_pred             CHHHHHHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        257 SAQDAYNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       257 ~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                      ++..|.+.|++|.|++. .+.......+++...+.
T Consensus       531 ~p~~aA~r~~vD~VIdP-~~TR~~l~~~~~~~~~~  564 (588)
T 3gf3_A          531 RPKYCTEKGMVDEIVDM-TEVRPYIQAFTEAAYQN  564 (588)
T ss_dssp             SHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTS
T ss_pred             CHHHHHhcCCCCeeeCH-HHHHHHHHHHHHHHHcC
Confidence            78888999999999999 88888887777766544

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=91.74  E-value=1.3  Score=42.63  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=28.2

Q ss_pred             CCccccchHHHHHHHHHHhh-hc----C-----CCCeEEEEEcCCC
Q psy12573         56 TFGTMGVGLGFALAAALYCN-HY----A-----PGKRVVCVQGDSA   91 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~-~~----d-----~~~~vvvl~g~g~   91 (315)
                      ..++||+++|.+++.+++.- ..    .     .+.+++++.|||.
T Consensus       114 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~  159 (680)
T 1gpu_A          114 TTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGC  159 (680)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             ccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCc
Confidence            35889999999999999742 11    0     2678999999996

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=91.46  E-value=1.2  Score=41.41  Aligned_cols=143  Identities=12%  Similarity=0.084  Sum_probs=82.1

Q ss_pred             HHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchhh
Q psy12573        122 LMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAAG  201 (315)
Q Consensus       122 ~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G  201 (315)
                      .+....+...|+|..++-      ..|..|.+-            |..+.......++..+.....|+|..|.|.+.|+|
T Consensus       379 fi~~c~~~~iPlv~lvDt------pGf~~G~~~------------E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg  440 (555)
T 3u9r_B          379 FIELACQRGIPLLFLQNI------TGFMVGQKY------------EAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAG  440 (555)
T ss_dssp             HHHHHHHHTCCEEEEEEE------CCBCCSHHH------------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTH
T ss_pred             HHHHHhcCCCCEEEEecC------cCCCCCHHH------------HHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchh
Confidence            333344566788887764      223333111            11255566667788889999999999999888765


Q ss_pred             hHHHhh-----cCeeeeeCCceeeCCCccCCCCCCchH-HHHh---h-h---c----CHH---HHHH-HHhc-CCCCCHH
Q psy12573        202 CQLVAT-----CDLAIATTASKFSTPGARHGIFCSTPA-VALT---R-K---V----PLG---VVRS-MTIT-GIPISAQ  259 (315)
Q Consensus       202 ~~l~l~-----~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~---~-~---~----g~~---~a~~-~~~~-g~~~~a~  259 (315)
                      . ++++     +|++++-+.+       ++++....+. ..+.   + .   .    ...   ..++ +... -+..++.
T Consensus       441 ~-~am~~~~~~~d~~~a~p~A-------~i~Vmgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y~~~~~p~  512 (555)
T 3u9r_B          441 N-YGMCGRAYDPRFLWMWPNA-------RIGVMGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQYEHQGHPY  512 (555)
T ss_dssp             H-HHTTCGGGCCSEEEECTTC-------EEESSCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             h-HhhcCccCCCCeEEEcCCc-------EEEcCCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHhCCHH
Confidence            4 4443     6888887774       4455432222 1111   1 0   1    111   0111 1100 1124667


Q ss_pred             HHHHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        260 DAYNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       260 ~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                      .+.+.|++|.|++. .+.........+.+..+
T Consensus       513 ~aa~r~~vD~vIdP-~~TR~~l~~~l~~~~~~  543 (555)
T 3u9r_B          513 YSSARLWDDGVIDP-AQTREVLALALSAALNA  543 (555)
T ss_dssp             HHHHTTSSSCBCCG-GGHHHHHHHHHHHHTTS
T ss_pred             HHhhccccCcccCh-HHHHHHHHHHHHHHhcC
Confidence            77889999999998 77777666555555444

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=91.12  E-value=0.054  Score=44.66  Aligned_cols=133  Identities=12%  Similarity=0.113  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE---ee
Q psy12573         63 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII---SG  139 (315)
Q Consensus        63 ~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v---~G  139 (315)
                      ++...|.++|.+++++ ++++|+|+.+    |.|+++...                 ..++..+...++|+++.+   +|
T Consensus        22 ~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~-----------------~~i~~~i~~~~~PVia~v~p~~G   79 (230)
T 3viv_A           22 YTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM-----------------MNIVQRIQQSKIPVIIYVYPPGA   79 (230)
T ss_dssp             HHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH-----------------HHHHHHHHTCSSCEEEEECSTTC
T ss_pred             HHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH-----------------HHHHHHHHhCCCCEEEEEecCCC
Confidence            3348899999888764 6899999876    557776543                 234556778999999999   99


Q ss_pred             EEecccchhccccChhhhhhhcCCCCcchh--------------hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHH
Q psy12573        140 VAAAAGCQLVATCDLAIATTASKFSTPGYN--------------ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLV  205 (315)
Q Consensus       140 ~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~  205 (315)
                      .+.++|..+..+||++++.+.++++..+..              .....+...++.+        +...|....--..++
T Consensus        80 ~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~~~~G~~~~~~~k~~~~~~~~~~~l--------a~~~Gr~~~~a~~~~  151 (230)
T 3viv_A           80 SAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSL--------AQESGRNATIAEEFI  151 (230)
T ss_dssp             EEETHHHHHHHTSSEEEECTTCEEECCCEEEEECTTSCEEECCHHHHHHHHHHHHHH--------HHHTTCCHHHHHHHH
T ss_pred             EEhHHHHHHHHhcCceeECCCCEEEeccceecCCCCCCchHHHHHHHHHHHHHHHHH--------HHHhCcCHHHHHHHH
Confidence            999999999999999998888777643322              1112222222222        112254333336777


Q ss_pred             hhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        206 ATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       206 l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .......+.++       .++|++...
T Consensus       152 ~~~~~ltA~EA-------le~GliD~V  171 (230)
T 3viv_A          152 TKDLSLTPEEA-------LKYGVIEVV  171 (230)
T ss_dssp             HTCCEECHHHH-------HHTTSCSEE
T ss_pred             hcCCeecHHHH-------HHcCCceEe
Confidence            77888888888       888888655

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=89.12  E-value=0.26  Score=42.37  Aligned_cols=94  Identities=13%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHH---HcCCCcE
Q psy12573         57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSI---LRHPVPI  133 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  133 (315)
                      -|+||..+...+..+++.+.++ ++++|+|++.|     |+|+.+...      .    +..+..++..+   ...++|+
T Consensus       131 ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~------~----l~~~~~i~~al~~~~~~~vP~  194 (304)
T 2f9y_B          131 GGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALM------S----LMQMAKTSAALAKMQERGLPY  194 (304)
T ss_dssp             TTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHH------H----HHHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHH------H----HHHHHHHHHHHHHHhcCCCCE
Confidence            3788888889999999988887 89999999877     556543321      0    12233444444   4569999


Q ss_pred             EEEEeeEEeccc-chhccccChhhhhhhcCCCCc
Q psy12573        134 LAIISGVAAAAG-CQLVATCDLAIATTASKFSTP  166 (315)
Q Consensus       134 i~~v~G~~~g~G-~~f~~g~D~~~~~~~~~~~~~  166 (315)
                      |++|+|.++|+| ..|...+|+.++.+.+.++..
T Consensus       195 IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~  228 (304)
T 2f9y_B          195 ISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA  228 (304)
T ss_dssp             EEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS
T ss_pred             EEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee
Confidence            999999999999 677888999999887666544

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=88.51  E-value=0.91  Score=43.23  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             CccccchHHHHHHHHHHhhhc-------CCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcC
Q psy12573         57 FGTMGVGLGFALAAALYCNHY-------APGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRH  129 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~-------d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (315)
                      .++||+++|.+++.+++.-..       ..+.+++++.|||. +..|.-...+.                     .....
T Consensus       113 tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~-~~eG~~~Eal~---------------------~A~~~  170 (632)
T 3l84_A          113 TGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGD-LQEGISYEACS---------------------LAGLH  170 (632)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHH-HHSHHHHHHHH---------------------HHHHT
T ss_pred             CcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcc-hhhccHHHHHH---------------------HHHHc
Confidence            489999999999999975211       12678999999996 33343322221                     11222


Q ss_pred             CCc-EEEEEe--eEEecccchhccccChhhhhhhcCCCCcchh---hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        130 PVP-ILAIIS--GVAAAAGCQLVATCDLAIATTASKFSTPGYN---ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       130 ~~~-~i~~v~--G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      ..+ .|.+++  ++.+.+...-....|+....+.  |+.....   .-...+...+......++|++..+.
T Consensus       171 ~L~~livi~nnN~~~i~~~~~~~~~~d~~~~~~a--~G~~~~~vdGhd~~~l~~al~~A~~~~~P~lI~v~  239 (632)
T 3l84_A          171 KLDNFILIYDSNNISIEGDVGLAFNENVKMRFEA--QGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAK  239 (632)
T ss_dssp             TCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHH--TTCEEEEEETTCHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             CCCcEEEEEECCCcccccchhhhcChhHHHHHHH--cCCeEEEEeeCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence            222 444443  3322221111223466555444  3433222   1344455566666667888876654

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=87.25  E-value=0.58  Score=37.29  Aligned_cols=79  Identities=13%  Similarity=0.101  Sum_probs=52.1

Q ss_pred             cchHHHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEe
Q psy12573         61 GVGLGFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIIS  138 (315)
Q Consensus        61 g~~~~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  138 (315)
                      .-+....+...|..++.+++.+.|+|  -+-|+..++|..                       +.+.+...++|+++.+.
T Consensus        36 ~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~-----------------------I~~~i~~~~~pV~~~v~   92 (193)
T 1yg6_A           36 EDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMS-----------------------IYDTMQFIKPDVSTICM   92 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHH-----------------------HHHHHHHSSSCEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHH-----------------------HHHHHHhcCCCEEEEEe
Confidence            33445778888887766555565555  444543333322                       23345566789999999


Q ss_pred             eEEecccchhccccCh--hhhhhhcC
Q psy12573        139 GVAAAAGCQLVATCDL--AIATTASK  162 (315)
Q Consensus       139 G~~~g~G~~f~~g~D~--~~~~~~~~  162 (315)
                      |.+..+|..+.+++|.  +.+.+.+.
T Consensus        93 g~AaS~g~~Ia~ag~~~~r~a~p~s~  118 (193)
T 1yg6_A           93 GQAASMGAFLLTAGAKGKRFCLPNSR  118 (193)
T ss_dssp             EEEETHHHHHHHTSCTTCEEECTTCE
T ss_pred             eeHHHHHHHHHHCCCcCcEEEecCcE
Confidence            9999999988889997  56655543

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=86.72  E-value=1.3  Score=42.66  Aligned_cols=36  Identities=31%  Similarity=0.331  Sum_probs=28.1

Q ss_pred             CCccccchHHHHHHHHHHhhhcC----------CCCeEEEEEcCCC
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSA   91 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d----------~~~~vvvl~g~g~   91 (315)
                      ..++||+++|.+++.+++.--..          .+.++++|.|||.
T Consensus       153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~  198 (711)
T 3uk1_A          153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGC  198 (711)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcc
Confidence            35899999999999999752110          1678999999996

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=85.62  E-value=1.4  Score=42.34  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=28.3

Q ss_pred             CCccccchHHHHHHHHHHhhhcC----------CCCeEEEEEcCCC
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSA   91 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d----------~~~~vvvl~g~g~   91 (315)
                      ..++||+++|.+++.+++.-...          .+.+++++.|||.
T Consensus       138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~  183 (690)
T 3m49_A          138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGD  183 (690)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHH
T ss_pred             CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchh
Confidence            34899999999999999752111          1678999999996

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=85.08  E-value=1.9  Score=41.26  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=28.2

Q ss_pred             CCccccchHHHHHHHHHHhhhcC-----C-----CCeEEEEEcCCC
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYA-----P-----GKRVVCVQGDSA   91 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d-----~-----~~~vvvl~g~g~   91 (315)
                      ..++||+++|.+++.+++.--..     +     +.++++|.|||.
T Consensus       114 ~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~  159 (663)
T 3kom_A          114 TTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGC  159 (663)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHH
T ss_pred             CCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchh
Confidence            35899999999999999752110     1     678999999996

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=85.04  E-value=2.2  Score=41.05  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             CCccccchHHHHHHHHHHhhhcC----------CCCeEEEEEcCCC
Q psy12573         56 TFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSA   91 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~~~d----------~~~~vvvl~g~g~   91 (315)
                      ..++||+++|.+++.+++.--..          ++.+++++.|||.
T Consensus       125 ~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~  170 (675)
T 1itz_A          125 TTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGC  170 (675)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             CCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhH
Confidence            45899999999999999852111          5679999999996

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=84.85  E-value=2  Score=41.07  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=29.2

Q ss_pred             CCCccccchHHHHHHHHHHhhhcC----------CCCeEEEEEcCCC
Q psy12573         55 GTFGTMGVGLGFALAAALYCNHYA----------PGKRVVCVQGDSA   91 (315)
Q Consensus        55 ~~~~~mg~~~~~~l~~~l~~~~~d----------~~~~vvvl~g~g~   91 (315)
                      ...++||+++|.+++.+++.--..          ++.+++++.|||.
T Consensus       115 ~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~  161 (651)
T 2e6k_A          115 VTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGD  161 (651)
T ss_dssp             SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             eccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhh
Confidence            345899999999999999852110          4678999999996

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=84.82  E-value=0.94  Score=36.87  Aligned_cols=88  Identities=10%  Similarity=0.119  Sum_probs=62.9

Q ss_pred             ccccchHHHHHHHHHHhhhcCCCCeEEEEE--cCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEE
Q psy12573         58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQ--GDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILA  135 (315)
Q Consensus        58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~--g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  135 (315)
                      +.++-.+...+.++|..++.|++.+.|+|.  +-|+.+++|.++                       ++.+...++|+++
T Consensus        52 g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I-----------------------~~~i~~~~~pV~t  108 (218)
T 1y7o_A           52 GPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAI-----------------------VDTMNFIKADVQT  108 (218)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHH-----------------------HHHHHHSSSCEEE
T ss_pred             CEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHH-----------------------HHHHHhcCCCEEE
Confidence            445556668999999988877666666664  344444443332                       3345567899999


Q ss_pred             EEeeEEecccchhccccCh--hhhhhhcCCCCcch
Q psy12573        136 IISGVAAAAGCQLVATCDL--AIATTASKFSTPGY  168 (315)
Q Consensus       136 ~v~G~~~g~G~~f~~g~D~--~~~~~~~~~~~~~~  168 (315)
                      ++.|.+.++|..+.++||.  +++.+.+.+...+.
T Consensus       109 ~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p  143 (218)
T 1y7o_A          109 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQP  143 (218)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCC
T ss_pred             EEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEecc
Confidence            9999999999999999999  88877766654443

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=83.73  E-value=2.7  Score=40.33  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             CCCccccchHHHHHHHHHHhhhc----------CCCCeEEEEEcCCC
Q psy12573         55 GTFGTMGVGLGFALAAALYCNHY----------APGKRVVCVQGDSA   91 (315)
Q Consensus        55 ~~~~~mg~~~~~~l~~~l~~~~~----------d~~~~vvvl~g~g~   91 (315)
                      ...++||+++|.+++.+++.--.          -.+.+++++.|||.
T Consensus       111 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~  157 (669)
T 2r8o_A          111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC  157 (669)
T ss_dssp             SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred             cccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhH
Confidence            34589999999999999985211          02678999999996

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=83.19  E-value=1.1  Score=35.93  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=52.1

Q ss_pred             cccchHHHHHHHHHHhhhcCCCCeEEEE--EcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE
Q psy12573         59 TMGVGLGFALAAALYCNHYAPGKRVVCV--QGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI  136 (315)
Q Consensus        59 ~mg~~~~~~l~~~l~~~~~d~~~~vvvl--~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  136 (315)
                      .++-+....+.+.|..++.++..+.|+|  -+-|+...+|..                       +.+.+...+.|+++.
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~-----------------------I~~~i~~~~~~V~t~   91 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFA-----------------------IYDTIQHIKPDVQTI   91 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHH-----------------------HHHHHHHSSSCEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHH-----------------------HHHHHHHhcCCcEEE
Confidence            3444555888888888876554454443  455543333322                       223355567899999


Q ss_pred             EeeEEecccchhccccCh--hhhhhhcC
Q psy12573        137 ISGVAAAAGCQLVATCDL--AIATTASK  162 (315)
Q Consensus       137 v~G~~~g~G~~f~~g~D~--~~~~~~~~  162 (315)
                      +.|.+.+.|..+.+++|.  +.+.+.+.
T Consensus        92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~  119 (203)
T 3qwd_A           92 CIGMAASMGSFLLAAGAKGKRFALPNAE  119 (203)
T ss_dssp             EEEEEETHHHHHHHTSCTTCEEECTTCE
T ss_pred             EeeeehhHHHHHHHcCCcCeEEEcCCce
Confidence            999999999888888884  55555443

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=81.23  E-value=12  Score=36.34  Aligned_cols=87  Identities=11%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEE--cc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAII--SG  195 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v--~G  195 (315)
                      ...+.+....+...|++..++-      .+|..|.+-            |..+.......++..+..+..|+|+.|  .|
T Consensus       471 KaarfI~~cd~f~iPlv~LvDt------pGf~~G~~a------------E~~Gi~~~gAkll~A~a~a~VP~itvI~r~G  532 (793)
T 2x24_A          471 KTAQAIKDFNREKLPLMIFANW------RGFSGGMKD------------MYDQVLKFGAYIVDGLRKYRQPVLIYIPPYA  532 (793)
T ss_dssp             HHHHHHHHHHTTTCCEEEECCB------CEECCSHHH------------HHTTHHHHHHHHHHHHHTCCSCEEEEECTTC
T ss_pred             HHHHHHHHhccCCCCEEEEecC------CCCCCCHHH------------HHhhHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            3344455556778899987764      233333211            112566667778888999999999999  88


Q ss_pred             ccchhhhHHHh----hcCe--eeeeCCceeeCCCccCCCCC
Q psy12573        196 VAAAAGCQLVA----TCDL--AIATTASKFSTPGARHGIFC  230 (315)
Q Consensus       196 ~~~g~G~~l~l----~~d~--~~a~~~a~~~~pe~~~Gl~~  230 (315)
                      .+.| |...++    ..|+  ++|-+.       .++++.+
T Consensus       533 e~~G-Ga~~~~~~~~~~d~~ev~Awp~-------A~~~VM~  565 (793)
T 2x24_A          533 EVRG-GSWAVMDTSINPLCIEMYADRE-------SRASVLE  565 (793)
T ss_dssp             EEEH-HHHHTTCGGGSTTTEEEEEETT-------CEEESSC
T ss_pred             cccc-hhHHhhhcccCccHHHHhhhcc-------CEEEecC
Confidence            8766 444444    3444  455555       5556553

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=80.55  E-value=6.1  Score=33.42  Aligned_cols=93  Identities=8%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             CccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEE
Q psy12573         57 FGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAI  136 (315)
Q Consensus        57 ~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  136 (315)
                      .|+||.....-+..+++.+.+ ....+|.|+-.|++...-+ +..+           .........+..+.....|.|++
T Consensus       134 gGs~g~~~~~K~~r~ie~A~~-~~lPlI~l~dsgGar~qEG-i~sl-----------~q~aki~~~l~~~s~~~vP~Isv  200 (285)
T 2f9i_B          134 MGSMGSVIGEKICRIIDYCTE-NRLPFILFSASGGARMQEG-IISL-----------MQMGKTSVSLKRHSDAGLLYISY  200 (285)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHH-TTCCEEEEEEECSCCGGGH-HHHH-----------HHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCcCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCcchhhh-hhhH-----------hHHHHHHHHHHHHHcCCCCEEEE
Confidence            488888877777777776555 5678988876665432100 0000           01122233455566678999999


Q ss_pred             EeeEEeccc-chhccccChhhhhhhcC
Q psy12573        137 ISGVAAAAG-CQLVATCDLAIATTASK  162 (315)
Q Consensus       137 v~G~~~g~G-~~f~~g~D~~~~~~~~~  162 (315)
                      +.|.++|++ ..|....|+..+.+.+.
T Consensus       201 v~g~~~GG~~as~a~~~D~i~a~p~A~  227 (285)
T 2f9i_B          201 LTHPTTGGVSASFASVGDINLSEPKAL  227 (285)
T ss_dssp             EEEEEEHHHHTTGGGCCSEEEECTTCB
T ss_pred             EeCCccHHHHHHhhhCCCEEEEeCCcE
Confidence            999999987 34567788877766543

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=80.41  E-value=1.5  Score=41.55  Aligned_cols=42  Identities=31%  Similarity=0.459  Sum_probs=31.7

Q ss_pred             CCccccchHHHHHHHHHHhh-hcCCCCeEEEEEcCCCccccchh
Q psy12573         56 TFGTMGVGLGFALAAALYCN-HYAPGKRVVCVQGDSAFGFSGME   98 (315)
Q Consensus        56 ~~~~mg~~~~~~l~~~l~~~-~~d~~~~vvvl~g~g~~~~aG~D   98 (315)
                      ..++||+++|.+++.+++.- .+.++.+|+++.|||.. ..|.-
T Consensus       119 ~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~-~eG~~  161 (616)
T 3mos_A          119 ATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGEL-SEGSV  161 (616)
T ss_dssp             CCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGG-GSHHH
T ss_pred             cccccCCccHHHHHHHHHHHHhCCCCCEEEEEECcccc-ccCcH
Confidence            35899999999999999853 23335799999999973 34443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	3e-17
d2ji7a3	183	c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxa	3e-14
d1pvda3	196	c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker	2e-10
d1zpda3	204	c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymom	2e-09
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	1e-08
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	8e-04
d2djia3	229	c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus	6e-08
d1ovma3	196	c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxyla	1e-06
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	6e-06
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	0.001
d2ihta3	198	c.36.1.9 (A:375-572) Carboxyethylarginine synthase	5e-05
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	2e-04
d2ez9a3	228	c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacill	0.001

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.9 bits (191), Expect = 3e-17
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 2/140 (1%)

Query: 177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVA 236
                I R   P++A ++G A   GC+L   CD+  A   ++F  P    G         
Sbjct: 88  SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQ 147

Query: 237 -LTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENSRSV 295
            LTR V   +   M +TG  ISAQDA  AGL++++         E       I  NS+ +
Sbjct: 148 RLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETL-VEEAIQCAEKIANNSKII 206

Query: 296 LTLGKQFLYQQMSLNIEEAY 315
           + + K+ +     + + E  
Sbjct: 207 VAMAKESVNAAFEMTLTEGN 226

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

 Score = 67.6 bits (164), Expect = 3e-14
 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 7/95 (7%)

Query: 8   PLNYYAAIHAVQVSIPDN--CIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLG 65
            +NY  ++  V+  +  N    +V EGAN +D  R ++    PR RLD+GT+G MG+G+G
Sbjct: 5   MMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMG 64

Query: 66  FALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELE 100
                         GK V+ V+GDSAFGFSGMELE
Sbjct: 65  -----YCVAAAAVTGKPVIAVEGDSAFGFSGMELE 94

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 6  SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGL 64
          S PL      + +   + +  +++ E G +   I ++   N    + +    +G++G   
Sbjct: 2  STPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPN--NTYGISQVLWGSIGFTT 59

Query: 65 GFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
          G  L AA       P KRV+   GD +   +  E
Sbjct: 60 GATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQE 93

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Length = 204

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 8  PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
          PL        V+  +  N  ++ E  ++    + + L N          +G +G  +  A
Sbjct: 2  PLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPN-GARVEYEMQWGHIGWSVPAA 60

Query: 68 LAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
             A+      P +R + + GD +F  +  E
Sbjct: 61 FGYAVGA----PERRNILMVGDGSFQLTAQE 87

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 1/176 (0%)

Query: 140 VAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA 199
           V    G    A  DLA     ++           +   L   +  +P P +A ++G A A
Sbjct: 48  VLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVA 107

Query: 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQ 259
            G  L   CDL +    ++      + G   +  +V L R V     + + +TG  + A+
Sbjct: 108 GGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAR 167

Query: 260 DAYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY 315
           +A   GL+ R+    + LE    +      +N+ + L L K+ L     + +E+ +
Sbjct: 168 EAKALGLVNRIAPPGKALEEAKALAEEVA-KNAPTSLRLTKELLLALPGMGLEDGF 222

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 1/104 (0%)

Query: 67  ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA-VDKEGRPKLDEIFSTCSDLMLS 125
           +L  AL      PG R V + G      +G +L  L  V + G  +      +   L   
Sbjct: 30  SLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHR 89

Query: 126 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN 169
           +  +P P +A ++G A A G  L   CDL +    ++       
Sbjct: 90  VYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVK 133

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 229

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

 Score = 50.3 bits (119), Expect = 6e-08
 Identities = 12/70 (17%), Positives = 22/70 (31%)

Query: 8  PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
           L +Y   +A+     ++ I   +  N+       L          +  F TMG+ +   
Sbjct: 2  DLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGG 61

Query: 68 LAAALYCNHY 77
          L A       
Sbjct: 62 LGAKNTYPDR 71

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 8  PLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFA 67
           L        +Q  I    II+ +   +      L L     + +    +G++G  L  A
Sbjct: 4  SLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPA-DVNFIVQPLWGSIGYTLAAA 62

Query: 68 LAAALYCNHY 77
            A   C + 
Sbjct: 63 FGAQTACPNR 72

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (104), Expect = 6e-06
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 2/143 (1%)

Query: 175 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA 234
                  I + P P++A I G     G  L++ CD+   T  + F       G+      
Sbjct: 96  YQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGT 155

Query: 235 VALTRKVPLGVVRS--MTITGIPISAQDAYNAGLITRVVSSNEELESETKVLTSAILENS 292
           +    KV         +T T   + A +A ++GL++RV    + + +    L + I   S
Sbjct: 156 LQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS 215

Query: 293 RSVLTLGKQFLYQQMSLNIEEAY 315
              +   K  L      +++E+ 
Sbjct: 216 PVAVQGSKINLIYSRDHSVDESL 238

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 67  ALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFST-------- 118
            L             R V V G      SG++L  +A D    P  D             
Sbjct: 35  ELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLIS 94

Query: 119 -CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIA 157
                   I + P P++A I G     G  L++ CD+   
Sbjct: 95  RYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYC 134

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 9/96 (9%)

Query: 8  PLNYYAAIHAV-----QVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGV 62
           +  +  I ++     + + P    IV +       G      + P   L +    + G 
Sbjct: 7  GMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGY 66

Query: 63 GLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
          G+     AA+      P +    + GD  F  +  +
Sbjct: 67 GIP----AAIGAQMARPDQPTFLIAGDGGFHSNSSD 98

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 25/244 (10%), Positives = 65/244 (26%), Gaps = 26/244 (10%)

Query: 97  MELETLAVDKEG--------RPK---------LDEIFSTCSDLMLSILRHPVPILAIISG 139
            + E ++   EG         P             +         +   +   I +    
Sbjct: 2   RQNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRF 61

Query: 140 VAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAA 199
            ++ A  + +A             ++   +  V+    +  + ++H   ++  ++G A  
Sbjct: 62  FSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIG 121

Query: 200 AGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTI--TGIPIS 257
               LVA CD+  +     +      +    +     ++  +  G   +        P  
Sbjct: 122 LSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFK 181

Query: 258 AQDAYNAGLITRVVSSNEELESET------KVLTSAILENSRSVLTLGKQFLYQQMSLNI 311
                  G I++  +      +E       + L   +           K+ L        
Sbjct: 182 YDIMCENGFISKNFNM-PSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAF 240

Query: 312 EEAY 315
            +A 
Sbjct: 241 NKAN 244

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 5  ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVG 63
          +  PL  Y  + AV      + I   + G   ++  R L L    RH         +   
Sbjct: 2  QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHI-----TSNLFAT 56

Query: 64 LGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGME 98
          +G  +  A+      P ++V  + GD     +  +
Sbjct: 57 MGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQD 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1ybha3	208	Acetohydroxyacid synthase catalytic subunit {Thale	99.67
d2ez9a3	228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	99.65
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	99.64
d2djia3	229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	99.59
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	99.58
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	99.58
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	99.53
d1ovma3	196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	99.47
d1pvda3	196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	99.47
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	99.43
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	99.39
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	99.09
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	99.04
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	99.01
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	98.99
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	98.96
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.96
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	98.9
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	98.89
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	98.87
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	98.78
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	98.72
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.71
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.66
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	98.29
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.66
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.45
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.28
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.24
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	97.14
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.14
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	97.11
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	97.01
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	96.93
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	96.88
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	96.85
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.36
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	94.96
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.86
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	94.6
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	94.59
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	94.16
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	92.44
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	82.87
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	81.43
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	80.58

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=8.9e-43  Score=292.96  Aligned_cols=211  Identities=18%  Similarity=0.208  Sum_probs=188.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCC-CccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDS-AFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g-~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      |+.+|||||+++|+++..++        .+|.+++.+++.|+++++|||+|.| ++||+|.|++++....  .++     
T Consensus        10 I~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~--~~~-----   74 (230)
T d2a7ka1          10 VRVITLDHPNKHNPFSRTLE--------TSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLS--RSE-----   74 (230)
T ss_dssp             EEEEEECCSSTTCBCCHHHH--------HHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC---CHH-----
T ss_pred             EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccc--ccc-----
Confidence            78899999999999999998        9999999999999999999999987 5788999999875310  000     


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                          +.              ..+...+..++..+.++|||+||+|+|+
T Consensus        75 ------------------------------------~~--------------~~~~~~~~~~~~~i~~~~kpvIaav~G~  104 (230)
T d2a7ka1          75 ------------------------------------DI--------------EEWIDRVIDLYQAVLNVNKPTIAAVDGY  104 (230)
T ss_dssp             ------------------------------------HH--------------HHHHHHHHHHHHHHHTCCSCEEEEECSE
T ss_pred             ------------------------------------cc--------------ccchhhhhhhhhcccchhcceeeecccc
Confidence                                                00              0223345567788899999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      |+|||++|+++||+++++++++|++||.++|++|++++.++++++|..++++++++|+.++++||+++|+|+++++. ++
T Consensus       105 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~  183 (230)
T d2a7ka1         105 AIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SA  183 (230)
T ss_dssp             EETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HH
T ss_pred             cccccccchhccchhhccccchhhhccccccccccccccccccccccccccccccccccchHHHHHHhhhcccCCCh-HH
Confidence            99999999999999999999999999999999998877889999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +.+.+.+++++|++.||.+++.+|+.+++.....+++.
T Consensus       184 l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~  221 (230)
T d2a7ka1         184 LLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQT  221 (230)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999999999999999877766654

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-42  Score=296.61  Aligned_cols=220  Identities=24%  Similarity=0.317  Sum_probs=190.3

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.|++.. |. ...|+++|||||+++|+++..++        .+|.++|.++++|+++++|||+|.|+.||+|.|++++.
T Consensus         4 ~~i~~e~~g~-~~~I~~itlnrP~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~   74 (260)
T d1mj3a_           4 QYIITEKKGK-NSSVGLIQLNRPKALNALCNGLI--------EELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQ   74 (260)
T ss_dssp             SSEEEEEESG-GGCEEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHT
T ss_pred             eEEEEEEEcC-CCCEEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCcceEEEecccccccccchhhhhh
Confidence            4455553 42 22489999999999999999998        99999999999999999999999999999999998874


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ...   ..                                  ..+                       ...+...+..+.
T Consensus        75 ~~~---~~----------------------------------~~~-----------------------~~~~~~~~~~~~   94 (260)
T d1mj3a_          75 NRT---FQ----------------------------------DCY-----------------------SGKFLSHWDHIT   94 (260)
T ss_dssp             TCC---HH----------------------------------HHH-----------------------HC--CCGGGGGG
T ss_pred             ccc---hh----------------------------------hhh-----------------------HHHHHHHHHHhc
Confidence            310   00                                  000                       000111234567


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      ++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|+++ ++++++++|...+++++++|++++++||+
T Consensus        95 ~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~  174 (260)
T d1mj3a_          95 RIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAK  174 (260)
T ss_dssp             GCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHH
T ss_pred             cCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHHHHHHHHcCcccCchhhc
Confidence            89999999999999999999999999999999999999999999999875 47899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++|+++++++. +++.+.+.+++++++..+|.+++.+|+++++....+++++
T Consensus       175 ~~Glv~~v~~~-~~~~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~  225 (260)
T d1mj3a_         175 QAGLVSKIFPV-ETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEG  225 (260)
T ss_dssp             HHTSCSEEECT-TTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHH
T ss_pred             cCCCceeeecc-cccccccccccccccchhhHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999 9999999999999999999999999999999998888765

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-41  Score=286.43  Aligned_cols=221  Identities=15%  Similarity=0.233  Sum_probs=186.5

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.|+++. .+    ++++|||+|+++|++|..++        .+|.++++.++.|+.+ +||++|.|+.||+|+|++++.
T Consensus         3 ~~i~~~~~~g----i~~Itlnrp~~~Nals~~~~--------~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~   69 (245)
T d2f6qa1           3 ETLVVTSEDG----ITKIMFNRPKKKNAINTEMY--------HEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFT   69 (245)
T ss_dssp             SSEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----
T ss_pred             ceEEEEEECC----EEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhh
Confidence            3455553 43    89999999999999999988        9999999999998876 899999999999999998875


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      ........                                            .          ........+..+++.+.
T Consensus        70 ~~~~~~~~--------------------------------------------~----------~~~~~~~~~~~~~~~i~   95 (245)
T d2f6qa1          70 DIPPGGVE--------------------------------------------E----------KAKNNAVLLREFVGCFI   95 (245)
T ss_dssp             CCCTTHHH--------------------------------------------H----------HHHHHHHHHHHHHHHHH
T ss_pred             cccccccc--------------------------------------------c----------ccchhhhHHHHHHhhhh
Confidence            31100000                                            0          00022333456777899


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQDAY  262 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~a~  262 (315)
                      .+|||+||+|+|+|.|||++|+++||+++++++++|++||.++|++|.+++ +++++++|..++++++++|+.++++||+
T Consensus        96 ~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~  175 (245)
T d2f6qa1          96 DFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEAC  175 (245)
T ss_dssp             SCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHH
T ss_pred             hcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhhhhccccccccccccc
Confidence            999999999999999999999999999999999999999999999998854 7899999999999999999999999999


Q ss_pred             HcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        263 NAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       263 ~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                      ++|+|+++++. +++.+.+.++++++++.||.+++.+|+.+++....++++
T Consensus       176 ~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~  225 (245)
T d2f6qa1         176 AQGLVTEVFPD-STFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHA  225 (245)
T ss_dssp             HTTSCSEEECT-TTHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGHHHHHH
T ss_pred             ccccccccCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCHHH
Confidence            99999999999 999999999999999999999999999999876665554

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-41  Score=289.38  Aligned_cols=214  Identities=22%  Similarity=0.319  Sum_probs=190.5

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |++||||||+++|++|..++        .+|.+++.+++.|+++++|||+|.|+.||+|+|++.+.........      
T Consensus         9 va~Itlnrp~~~Nal~~~~~--------~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~------   74 (253)
T d1uiya_           9 VAVVFLNDPERRNPLSPEMA--------LSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAE------   74 (253)
T ss_dssp             EEEEEECCGGGTCCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHH------
T ss_pred             EEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcc------
Confidence            88999999999999999998        9999999999999999999999999999999999877531110000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                                       ...........++..+.++|||+||+|+|+|
T Consensus        75 -------------------------------------------------~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a  105 (253)
T d1uiya_          75 -------------------------------------------------ENYRHSLSLMRLFHRVYTYPKPTVAAVNGPA  105 (253)
T ss_dssp             -------------------------------------------------HHHHHHHHHHHHHHHHHHCSSCEEEEECSCE
T ss_pred             -------------------------------------------------cccchhhhhhhhhhHHhcCCCCEEEEeCeEE
Confidence                                                             0002233345567788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchHH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEEL  277 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~~  277 (315)
                      +|||++|+++||+++++++++|++||.++|++|.++++++++++|..++++++++|+++++++|+++|+++++++. +++
T Consensus       106 ~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~  184 (253)
T d1uiya_         106 VAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKA  184 (253)
T ss_dssp             ETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCH
T ss_pred             ehhhHHHHhhhhhhhhhhhhHHhhhhcccccccccchhhhhcccCHHHHHHHhhcCcCCCHHHHHHhCCCcccccc-ccc
Confidence            9999999999999999999999999999999987777889999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        278 ESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       278 ~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      .+.+.++++++++.++.++..+|+.+++....+++++|
T Consensus       185 ~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l  222 (253)
T d1uiya_         185 LEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGF  222 (253)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred             chhHHHHHHhhcccchHHHHHHHHHHHHhhcCCHHHHH
Confidence            99999999999999999999999999999888887753

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.1e-41  Score=287.00  Aligned_cols=208  Identities=16%  Similarity=0.198  Sum_probs=184.3

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |+++|| +|+++|+++..++        .+|.+++++++.|+++|+|||+|.|+.||+|+|++++.....+...      
T Consensus        20 V~~itl-rp~~~Nal~~~m~--------~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~------   84 (263)
T d1wz8a1          20 VLEITF-RGEKLNAMPPALH--------RGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEA------   84 (263)
T ss_dssp             EEEEEE-CCSGGGCBCHHHH--------HHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHH------
T ss_pred             EEEEEE-CCCCCCCCCHHHH--------HHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccc------
Confidence            788999 8999999999998        9999999999999999999999999999999999887531100000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                                        ...+......++..+.++|||+||+|+|+|
T Consensus        85 --------------------------------------------------~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a  114 (263)
T d1wz8a1          85 --------------------------------------------------LLRVFWEARDLVLGPLNFPRPVVAAVEKVA  114 (263)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHHHHSSSCEEEEECSEE
T ss_pred             --------------------------------------------------cccchhhhhHHHHHhhhhhcceeeeccccc
Confidence                                                              002233345677788999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      +|||++|+++||+++++++++|++||.++|++|..+ .+++++++|..++++++++|+.++++||+++|+++++++. ++
T Consensus       115 ~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~-~~  193 (263)
T d1wz8a1         115 VGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVED-EK  193 (263)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-GG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccchhHHHhcCCcccccch-hh
Confidence            999999999999999999999999999999999885 4788899999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCCh
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNI  311 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l  311 (315)
                      +.+.+.+++++|++.||.+++.+|+++++.....+
T Consensus       194 l~~~a~~~a~~la~~~~~al~~~K~~l~~~~~~~~  228 (263)
T d1wz8a1         194 VYEKALEVAERLAQGPKEALHHTKHALNHWYRSFL  228 (263)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTH
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhChH
Confidence            99999999999999999999999999988765444

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=1.3e-40  Score=286.48  Aligned_cols=216  Identities=20%  Similarity=0.247  Sum_probs=190.0

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |++||||||+++|++|..++        .+|.++++++++|+++++|||+|.|+.||+|+|++++....  ....  .  
T Consensus        13 Va~Itlnrp~~~Nal~~~~~--------~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~--~~~~--~--   78 (269)
T d1nzya_          13 VAEITIKLPRHRNALSVKAM--------QEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDK--GVAG--V--   78 (269)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSS--HHHH--H--
T ss_pred             EEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcc--cccc--h--
Confidence            89999999999999999998        99999999999999999999999999999999998774310  0000  0  


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                              .+       ........++.++..+..+|||+||+|+|+|
T Consensus        79 ----------------------------------------~~-------~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a  111 (269)
T d1nzya_          79 ----------------------------------------RD-------HFRIAALWWHQMIHKIIRVKRPVLAAINGVA  111 (269)
T ss_dssp             ----------------------------------------HH-------HHHHHHHHHHHHHHHHHHCSSCEEEEECSEE
T ss_pred             ----------------------------------------hh-------HHHHHHHHHHHHHHHHHhhcchhehhhhhhc
Confidence                                                    00       0001222345677789999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCchH
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNEE  276 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~~  276 (315)
                      .|||++|+++||+++++++++|++||.++|+.|..+ .+++++++|...+++++++|+.++++||+++|+|+++++. ++
T Consensus       112 ~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-~~  190 (269)
T d1nzya_         112 AGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DE  190 (269)
T ss_dssp             ETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSCEECH-HH
T ss_pred             CCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhhhhhccccccccchhHHHHcCCccccccc-cc
Confidence            999999999999999999999999999999998875 5789999999999999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        277 LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      +.+.+.+++++|++.||.+++.+|+.+++....++++++
T Consensus       191 l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~  229 (269)
T d1nzya_         191 FREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECT  229 (269)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cccchhhhhhhhhhhhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999988888753

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=285.10  Aligned_cols=213  Identities=17%  Similarity=0.270  Sum_probs=186.0

Q ss_pred             hhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      ++++|+| +|+++|+++..++        .+|.+++..++.| +.++|||+|.|+.||+|.|++++.....+...     
T Consensus        12 i~~i~l~~rp~~~Nals~~~~--------~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~-----   77 (258)
T d2fw2a1          12 FTQIVLSTRSTEKNALNTEVI--------KEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRN-----   77 (258)
T ss_dssp             EEEEEECCSSSSTTCBCHHHH--------HHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHH-----
T ss_pred             EEEEEECCCCcccCCCCHHHH--------HHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhccccccc-----
Confidence            6778887 7999999999988        9999999999887 56999999999999999999987541100000     


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                            .           ....+...+..++..+.++|||+||+|+|+
T Consensus        78 --------------------------------------~-----------~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~  108 (258)
T d2fw2a1          78 --------------------------------------T-----------ASLEMVDTIKNFVNTFIQFKKPIVVSVNGP  108 (258)
T ss_dssp             --------------------------------------H-----------HHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             --------------------------------------c-----------hhhHHHHHHHHHHHhhhccceeeeeecccc
Confidence                                                  0           000233345667788999999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++++++||+++++++++|++||.++|++|+++ .+++++++|...+++++++|+.+++++|+++|+|+++++. +
T Consensus       109 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~  187 (258)
T d2fw2a1         109 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLT-G  187 (258)
T ss_dssp             EETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECS-T
T ss_pred             cccccccccccccccceecccceeeccccccccccccccccchhhcCccccchhhccCcccccccccccccccccccc-c
Confidence            9999999999999999999999999999999999875 5789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      ++.+.+.+++++|++.||.+++.+|+.+++....+++++
T Consensus       188 ~l~~~a~~~a~~i~~~~~~a~~~~K~~~~~~~~~~l~~~  226 (258)
T d2fw2a1         188 TFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQA  226 (258)
T ss_dssp             THHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhHHHHHHHHHHHHHhhcCCHHHH
Confidence            999999999999999999999999999998887777664

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=2.2e-40  Score=281.56  Aligned_cols=208  Identities=17%  Similarity=0.241  Sum_probs=182.7

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      |+++|||+|+ +|+++..++        .+|.++++.+++|+++++|||+|.|+ +||+|.|++++...  . +      
T Consensus        14 Ia~itln~p~-~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~--~-~------   75 (249)
T d1sg4a1          14 VAVMKFKNPP-VNSLSLEFL--------TELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGR--S-P------   75 (249)
T ss_dssp             EEEEEECCTT-TTEECHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSC--C-H------
T ss_pred             EEEEEECCCC-cCCCCHHHH--------HHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccc--c-c------
Confidence            8899999995 799999988        99999999999999999999999986 58899999876320  0 0      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                            .           +..++...+..++..+..+|||+||+|+|+
T Consensus        76 --------------------------------------~-----------~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  106 (249)
T d1sg4a1          76 --------------------------------------A-----------HYAGYWKAVQELWLRLYQSNLVLVSAINGA  106 (249)
T ss_dssp             --------------------------------------H-----------HHHHHHHHHHHHHHHHHTCSSEEEEEECEE
T ss_pred             --------------------------------------c-----------cccccchhhHHHHHhhhcCccccchhhccc
Confidence                                                  0           001334455677888999999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCcee--eCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        197 AAAAGCQLVATCDLAIATTASKF--STPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~--~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      |.|||++|+++||+++++++++|  ++||.++|++|..+ .+++++++|...+++++++|+++++++|+++|+++++++.
T Consensus       107 a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~  186 (249)
T d1sg4a1         107 CPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPE  186 (249)
T ss_dssp             BCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred             ccccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccHHHHHhhccccccCCh
Confidence            99999999999999999999876  78999999999874 4789999999999999999999999999999999999998


Q ss_pred             chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhh
Q psy12573        274 NEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEE  313 (315)
Q Consensus       274 ~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~  313 (315)
                       +++.+.+.++++++++.||.+++.+|+.+++.....+++
T Consensus       187 -~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~l~~  225 (249)
T d1sg4a1         187 -EQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVT  225 (249)
T ss_dssp             -GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHH
Confidence             999999999999999999999999999999876554443

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-40  Score=283.72  Aligned_cols=210  Identities=18%  Similarity=0.263  Sum_probs=183.4

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCC-ccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSA-FGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~-~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      |+++|||||+++|++|..++        .+|.++++.++.|+++++|||+|.|+ +||+|.|++.+...  ...      
T Consensus        16 I~~itlnrp~~~Nal~~~~~--------~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~--~~~------   79 (266)
T d1hzda_          16 IVVLGINRAYGKNSLSKNLI--------KMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM--SSS------   79 (266)
T ss_dssp             EEEEEECCGGGTTCBCTTHH--------HHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS--CHH------
T ss_pred             EEEEEeCCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCcceEEEeccccccccccccccccccc--cch------
Confidence            88899999999999999999        99999999999999999999999986 56678888776431  000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                                        +...+...+..++..+.++|||+||+|+|+
T Consensus        80 --------------------------------------------------~~~~~~~~~~~~~~~i~~~~kpvIaav~G~  109 (266)
T d1hzda_          80 --------------------------------------------------EVGPFVSKIRAVINDIANLPVPTIAAIDGL  109 (266)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHHHHTCSSCEEEEESEE
T ss_pred             --------------------------------------------------hhhhhhhHHHHHHHHHhcCCcccccccccc
Confidence                                                              000223334567778899999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||.++|++|+++ .+++++++|..++++++++|+.+++++|+++|+|++++++ +
T Consensus       110 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~  188 (266)
T d1hzda_         110 ALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ-N  188 (266)
T ss_dssp             EETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECC-C
T ss_pred             cccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccCHHHhhcccccccccCh-h
Confidence            9999999999999999999999999999999999885 4789999999999999999999999999999999999998 5


Q ss_pred             H----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhh
Q psy12573        276 E----LESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEA  314 (315)
Q Consensus       276 ~----~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~  314 (315)
                      +    +.+.+.+++++++..||.+++.+|+.+++....+++++
T Consensus       189 ~l~~~~~~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~  231 (266)
T d1hzda_         189 QEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTG  231 (266)
T ss_dssp             TTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhhhHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHH
Confidence            5    55677777888999999999999999999998888765

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.6e-40  Score=282.93  Aligned_cols=223  Identities=21%  Similarity=0.261  Sum_probs=188.2

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |+++|||||+++|++|..|+        .+|.++|+.+++|+++++|||+|.|+.||+|+|+.++.........      
T Consensus        14 I~~itlnrP~~~Nals~~m~--------~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~------   79 (275)
T d1dcia_          14 VLHVQLNRPEKRNAMNRAFW--------RELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPG------   79 (275)
T ss_dssp             EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCC------
T ss_pred             EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhccccccc------
Confidence            89999999999999999998        9999999999999999999999999999999999887642111000      


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                                                        .+......       ........+...+..+.++|||+|++|+|+|
T Consensus        80 ----------------------------------~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a  118 (275)
T d1dcia_          80 ----------------------------------DDVARIAW-------YLRDLISRYQKTFTVIEKCPKPVIAAIHGGC  118 (275)
T ss_dssp             ----------------------------------SSHHHHHH-------HHHHHHHHHHHHHHHHHHSSSCEEEEECSEE
T ss_pred             ----------------------------------ccccchhh-------hhccchhhhHHHHHHHHhcCCCEEEEEeeEe
Confidence                                              00000000       0013344556777889999999999999999


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHH-HHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLG-VVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~-~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      +|||++|+++||+++++++++|++||.++|++|..++ +.+++++|.. .+.+++++|+.++++||+++|+++++++.++
T Consensus       119 ~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~  198 (275)
T d1dcia_         119 IGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKD  198 (275)
T ss_dssp             ETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHH
T ss_pred             ehhhHHHHhhcCchhhccCccccchhcccccccccccccccccccccccccccccccccccchhhhccCCCceeeeehhh
Confidence            9999999999999999999999999999999998854 6788888854 5678999999999999999999999999834


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChhhhC
Q psy12573        276 ELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIEEAY  315 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~~~l  315 (315)
                      .+.+.+.+++++|++.+|.+++.+|+.+++..+.++++++
T Consensus       199 ~l~~~~~~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~  238 (275)
T d1dcia_         199 VMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESL  238 (275)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hhhhcccccccccccccHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4778889999999999999999999999999888887753

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.7e-40  Score=281.66  Aligned_cols=213  Identities=22%  Similarity=0.238  Sum_probs=181.8

Q ss_pred             CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcC--CCccccchhhhH
Q psy12573         25 NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGD--SAFGFSGMELET  101 (315)
Q Consensus        25 ~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~--g~~~~aG~Dl~~  101 (315)
                      +.|.+.. ++    |++||||+|+++|+++..++        .+|.++|+++++ +++++|||+|.  |+.||+|+|+++
T Consensus         4 ~~i~~~~~~~----v~~Itlnrp~~~Nal~~~~~--------~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~   70 (261)
T d1ef8a_           4 QYVNVVTINK----VAVIEFNYGRKLNALSKVFI--------DDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHE   70 (261)
T ss_dssp             SSEEEEEETT----EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTT
T ss_pred             CEEEEEEECC----EEEEEEcCCCCCCCCCHHHH--------HHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccc
Confidence            4444443 55    89999999999999999888        999999999985 57899999986  568999999987


Q ss_pred             HhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHH
Q psy12573        102 LAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLS  181 (315)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (315)
                      +....                                       .      |..              .+...+..+++.
T Consensus        71 ~~~~~---------------------------------------~------~~~--------------~~~~~~~~~~~~   91 (261)
T d1ef8a_          71 LPSGG---------------------------------------R------DPL--------------SYDDPLRQITRM   91 (261)
T ss_dssp             C--------------------------------------------------CTT--------------CTTSHHHHHHHH
T ss_pred             cccCC---------------------------------------c------ccc--------------ccccchhhhHHH
Confidence            64200                                       0      000              011123456778


Q ss_pred             HhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchH-HHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        182 ILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPA-VALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       182 l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~-~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      +.++|||+||+|+|+|+|||++|+++||+++++++++|++||.++|++|..++ +++++.+|..++++++++|+.++++|
T Consensus        92 i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~a~~~~l~g~~~~a~e  171 (261)
T d1ef8a_          92 IQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQR  171 (261)
T ss_dssp             HHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHH
T ss_pred             HHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccccccccccCceEcHHH
Confidence            89999999999999999999999999999999999999999999999999854 67999999999999999999999999


Q ss_pred             HHHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCC
Q psy12573        261 AYNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLN  310 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~  310 (315)
                      |+++|+++++++. +++.+.+.+++++++..+|.+++.+|+.++...+..
T Consensus       172 A~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~  220 (261)
T d1ef8a_         172 ALAVGILNHVVEV-EELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAH  220 (261)
T ss_dssp             HHHTTSCSEEECH-HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHcCCcceeeec-hhhhhhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcC
Confidence            9999999999999 999999999999999999999999999998876543

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.4e-40  Score=287.17  Aligned_cols=214  Identities=20%  Similarity=0.173  Sum_probs=174.8

Q ss_pred             hhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHH
Q psy12573         38 IGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFS  117 (315)
Q Consensus        38 ~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~  117 (315)
                      |++||||||+++|++|..|+        .+|.+++++++.|+++|+|||+|.|+.||+|++                   
T Consensus        30 i~~ItlnRP~~~NAl~~~m~--------~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~-------------------   82 (297)
T d1q52a_          30 TVRVAFNRPEVRNAFRPHTV--------DELYRVLDHARMSPDVGVVLLTGNGPSPKDGGW-------------------   82 (297)
T ss_dssp             EEEEEECCGGGTTCCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCC-------------------
T ss_pred             EEEEEECCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCccEEEEecCCCcccchhh-------------------
Confidence            89999999999999999998        999999999999999999999999877776543                   


Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCC-------CCcchh-hHHHHHHHHHHHHhcCCCcE
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF-------STPGYN-ILVSTCSDLMLSILRHPVPI  189 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~l~~~~kpv  189 (315)
                                                   .||+|.|+.........       ...+.. .....+..++..+..+||||
T Consensus        83 -----------------------------~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  133 (297)
T d1q52a_          83 -----------------------------AFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVV  133 (297)
T ss_dssp             -----------------------------EEECCC-----------------------------CHHHHHHHHHHSSSEE
T ss_pred             -----------------------------hhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeE
Confidence                                         23333333222111000       000001 22233456777889999999


Q ss_pred             EEEEccccchhhhHHHhhcCeeeeeCC-ceeeCCCccCCCCCCc-hHHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCcc
Q psy12573        190 LAIISGVAAAAGCQLVATCDLAIATTA-SKFSTPGARHGIFCST-PAVALTRKVPLGVVRSMTITGIPISAQDAYNAGLI  267 (315)
Q Consensus       190 Ia~v~G~~~g~G~~l~l~~d~~~a~~~-a~~~~pe~~~Gl~~~~-~~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv  267 (315)
                      ||+|+|+|+|||++|+++||+++++++ ++|++||.++|++|.. +.+++++++|..++++++++|+.++++||+++|++
T Consensus       134 Iaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv  213 (297)
T d1q52a_         134 ICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAV  213 (297)
T ss_dssp             EEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSC
T ss_pred             EEEEcceeeeccchhhhhhhccccccccccceeeeeccccccccccccccccccCccceeeccccccccchHhhhhhccc
Confidence            999999999999999999999999764 6899999999999976 45889999999999999999999999999999999


Q ss_pred             ccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Q psy12573        268 TRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMS  308 (315)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~  308 (315)
                      +++++. +++.+.+.++++++++.||.+++.+|+.++...+
T Consensus       214 ~~vv~~-~el~~~~~~~a~~l~~~~~~a~~~~K~~~~~~~~  253 (297)
T d1q52a_         214 NAVAEH-AELETVGLQWAAEINAKSPQAQRMLKFAFNLLDD  253 (297)
T ss_dssp             SEEECG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTT
T ss_pred             cccCch-HHhhHHHHHHhhhhccCCHHHHHHHHHHHHHhhc
Confidence            999999 9999999999999999999999999999887543

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.2e-39  Score=276.92  Aligned_cols=216  Identities=17%  Similarity=0.211  Sum_probs=186.3

Q ss_pred             CceEEe-CCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHh
Q psy12573         25 NCIIVG-EGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLA  103 (315)
Q Consensus        25 ~~~~~~-~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~  103 (315)
                      +.|.+. +|+    ++++|||+|+++|+++..++        .+|.+++.++++|+++++|||+|.|+.||+|.|++++.
T Consensus        13 ~~i~~~~~~~----v~~itln~p~~~Nal~~~~~--------~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~   80 (249)
T d1szoa_          13 ENIRLERDGG----VLLVTVHTEGKSLVWTSTAH--------DELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFN   80 (249)
T ss_dssp             TTEEEEEETT----EEEEEECBTTBSCEECHHHH--------HHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSC
T ss_pred             CeEEEEEECC----EEEEEECCCCccCCCCHHHH--------HHHHHHHHHHHhCCCcceEeeecccccccccchhhhhh
Confidence            455444 365    88999999999999999988        99999999999999999999999999999999998763


Q ss_pred             hhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHh
Q psy12573        104 VDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSIL  183 (315)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  183 (315)
                      .  .....                                                        ...+...+..++..+.
T Consensus        81 ~--~~~~~--------------------------------------------------------~~~~~~~~~~l~~~i~  102 (249)
T d1szoa_          81 L--GTPHD--------------------------------------------------------WDEIIFEGQRLLNNLL  102 (249)
T ss_dssp             C--SSHHH--------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred             c--ccccc--------------------------------------------------------hhhhhhhhhhhhhhcc
Confidence            2  00000                                                        0022334456778889


Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceee-CCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHH
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS-TPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDA  261 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~-~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a  261 (315)
                      ++|||+|++++|.+. ||++|+++||+++++++++|. +||.++|++|.++ .+++++++|...+++++++|+.++++||
T Consensus       103 ~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~ltg~~~~a~eA  181 (249)
T d1szoa_         103 SIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTA  181 (249)
T ss_dssp             HCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHH
T ss_pred             cCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCccceeeecccCCCCCHHHH
Confidence            999999999999885 578999999999999999985 7999999999885 4789999999999999999999999999


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChh
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILENSRSVLTLGKQFLYQQMSLNIE  312 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~  312 (315)
                      +++|+|+++++. +++.+.+.++++++++.||.+++.+|+.+++.....++
T Consensus       182 ~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~e  231 (249)
T d1szoa_         182 LDYGAVNEVLSE-QELLPRAWELARGIAEKPLLARRYARKVLTRQLRRVME  231 (249)
T ss_dssp             HHHTSCSEEECH-HHHHHHHHHHHHHHHTSCHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHhCCcCcccCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccHH
Confidence            999999999999 99999999999999999999999999999887655444

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-39  Score=280.53  Aligned_cols=229  Identities=15%  Similarity=0.126  Sum_probs=183.3

Q ss_pred             CCceEEe-CCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHH
Q psy12573         24 DNCIIVG-EGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETL  102 (315)
Q Consensus        24 ~~~~~~~-~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~  102 (315)
                      .+.|.+. +|+    ++.||||+|+++|++|..++        .+|.+++.++++|+++++|||+|.|+.||+|+|++++
T Consensus         4 ~e~i~~~~~~~----v~~Itlnrp~~~Na~~~~~~--------~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~   71 (266)
T d1pjha_           4 NEKISYRIEGP----FFIIHLINPDNLNALEGEDY--------IYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGI   71 (266)
T ss_dssp             BTTEEEEEETT----EEEEEECCGGGTTCBCHHHH--------HHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHH
T ss_pred             CCeEEEEEECC----EEEEEEcCCCcCCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEeccccccccchhHHHH
Confidence            3444444 466    89999999999999999998        9999999999999999999999999999999999988


Q ss_pred             hhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHH
Q psy12573        103 AVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSI  182 (315)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  182 (315)
                      ........                                   ..+     .....       .....+......++..+
T Consensus        72 ~~~~~~~~-----------------------------------~~~-----~~~~~-------~~~~~~~~~~~~~~~~l  104 (266)
T d1pjha_          72 AKAQGDDT-----------------------------------NKY-----PSETS-------KWVSNFVARNVYVTDAF  104 (266)
T ss_dssp             HC------------------------------------------CC-----SSHHH-------HHHHHTHHHHHHHHHHH
T ss_pred             Hhcccccc-----------------------------------ccc-----cchhh-------HHHHHHHHHHHHHHHHH
Confidence            64110000                                   000     00000       00113445566688889


Q ss_pred             hcCCCcEEEEEccccchhhhHHHhhcCeeeee-CCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHH
Q psy12573        183 LRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQD  260 (315)
Q Consensus       183 ~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~-~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~  260 (315)
                      .++|||+||+|+|+|+|||++|+++||+++|+ +.++|++||.++|++|.++ ++++++++|...+++++++|+.++++|
T Consensus       105 ~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r~~g~~~a~~llltg~~~~a~e  184 (266)
T d1pjha_         105 IKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI  184 (266)
T ss_dssp             HHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHH
T ss_pred             HhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccccccccchhhhhhccCCcCCHHH
Confidence            99999999999999999999999999999996 5689999999999999874 578999999999999999999999999


Q ss_pred             HHHcCccccccCCchHH--H----HHHHHHHHHHHhCCHHHHHHHHHHHHHhhCCChh
Q psy12573        261 AYNAGLITRVVSSNEEL--E----SETKVLTSAILENSRSVLTLGKQFLYQQMSLNIE  312 (315)
Q Consensus       261 a~~~Glv~~v~~~~~~~--~----~~~~~~~~~l~~~~~~a~~~~k~~l~~~~~~~l~  312 (315)
                      |+++|+|+++++. ++.  +    +.+..+++++...++.++..+|+.++......++
T Consensus       185 A~~~Glv~~v~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~~~  241 (266)
T d1pjha_         185 MCENGFISKNFNM-PSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFN  241 (266)
T ss_dssp             HHHTTCCSEECCC-CTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHHHH
T ss_pred             HHHCCCEeEeeCc-hhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHH
Confidence            9999999999986 332  2    2345667778889999999999998876554443

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=7.5e-38  Score=273.73  Aligned_cols=192  Identities=16%  Similarity=0.175  Sum_probs=168.0

Q ss_pred             hhhhhhc-cCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHH
Q psy12573         38 IGRSLLL-NNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIF  116 (315)
Q Consensus        38 ~~~~~l~-~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~  116 (315)
                      |++++|| +|++.|+++..++        .+|.+++++++.|+++++|||+|.|+.||+|.|++++.......+      
T Consensus        17 va~i~ln~~p~~~Nal~~~~~--------~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~------   82 (310)
T d1wdka4          17 IVELKFDLKGESVNKFNRLTL--------NELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPD------   82 (310)
T ss_dssp             EEEEEECCTTSSSCBCCHHHH--------HHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCH------
T ss_pred             EEEEEECCCCcccCCCCHHHH--------HHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccc------
Confidence            8899998 7899999999988        999999999999999999999999999999999998754111000      


Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                                                           ..            .......+..++..+..+|||+|++|+|+
T Consensus        83 -------------------------------------~~------------~~~~~~~~~~~~~~l~~~~kPvIaav~G~  113 (310)
T d1wdka4          83 -------------------------------------AE------------LIAGNLEANKIFSDFEDLNVPTVAAINGI  113 (310)
T ss_dssp             -------------------------------------HH------------HHHHHHHHHHHHHHHHTCSSCEEEEECSC
T ss_pred             -------------------------------------hh------------hhhhhhHHHHHHHHhhcCCccceeecccc
Confidence                                                 00            00111224567778899999999999999


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-HHHHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCCch
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-AVALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSSNE  275 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~~~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~~~  275 (315)
                      |+|||++|+++||+++++++++|++||+++|++|.++ .+++++++|...+++++++|+.++++||+++|+++++++. +
T Consensus       114 a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~  192 (310)
T d1wdka4         114 ALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTA-D  192 (310)
T ss_dssp             EETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-G
T ss_pred             ccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhhhhhhhhccccccCHHHHhhccCccEEccH-H
Confidence            9999999999999999999999999999999999874 5789999999999999999999999999999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhCCH
Q psy12573        276 ELESETKVLTSAILENSR  293 (315)
Q Consensus       276 ~~~~~~~~~~~~l~~~~~  293 (315)
                      ++.+.+.+++++++..++
T Consensus       193 ~l~~~a~~~a~~~~~~~~  210 (310)
T d1wdka4         193 KLGAAALDLIKRAISGEL  210 (310)
T ss_dssp             GHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999987653

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.67  E-value=2.2e-16  Score=128.70  Aligned_cols=157  Identities=22%  Similarity=0.270  Sum_probs=119.1

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      ++|+|+++++.|++.+|+|.|+++| |.+++|.+++ ++.++++.++++..+++||+++|.+++++++.    |+.+||+
T Consensus         1 e~i~P~~v~~~l~~~l~~d~ivv~D~G~~~~~~~~~-~~~~~~~~~~~~~~~g~mG~glpaaiGa~~A~----p~~~Vi~   75 (208)
T d1ybha3           1 EAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQF-YNYKKPRQWLSSGGLGAMGFGLPAAIGASVAN----PDAIVVD   75 (208)
T ss_dssp             TBCCHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHS-CCCSSTTSEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEE
T ss_pred             CccCHHHHHHHHHhhCCcCeEEEEcCcHHHHHHHHh-cccCCCceeccccccccchhhhhhHHHHHhcC----CCCcEEE
Confidence            3699999999999999999999999 8889999998 99999999999999999999999999999985    8999999


Q ss_pred             EEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc------------------c--
Q psy12573         86 VQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAA------------------G--  145 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~------------------G--  145 (315)
                      |+|||++.+++++|.++.+...+                       .++.++|--.+|.                  +  
T Consensus        76 i~GDGsf~m~~~El~Ta~r~~lp-----------------------i~iiV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~  132 (208)
T d1ybha3          76 IDGDGSFIMNVQELATIRVENLP-----------------------VKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDP  132 (208)
T ss_dssp             EEEHHHHHHTTTHHHHHHHTTCC-----------------------EEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCG
T ss_pred             EccCCchhhhhhhHHHHHHhCCC-----------------------EEEEEEeccccccceehhhhcccccccccccccc
Confidence            99999999999999988762211                       1111111111100                  0  


Q ss_pred             -chhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        146 -CQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       146 -~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                       .......|+..+++.  ++....+ ....++...+......++|++..|
T Consensus       133 ~~~~~~~pd~~~iA~a--~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV  180 (208)
T d1ybha3         133 AQEDEIFPNMLLFAAA--CGIPAARVTKKADLREAIQTMLDTPGPYLLDV  180 (208)
T ss_dssp             GGTTSCSSCHHHHHHH--TTCCEEEECBHHHHHHHHHHHHHSSSCEEEEE
T ss_pred             cccCCCCCCHHHhhcc--CCceEEEcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence             001122478777777  5666655 566667777777778888886443

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.65  E-value=3.7e-16  Score=128.78  Aligned_cols=95  Identities=26%  Similarity=0.377  Sum_probs=88.7

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      .++||+|+++++.|++.+|+|+++++| |.+..|..++ ++.++|++++++..+++||+++|.+++++++.    |+.+|
T Consensus         2 ~~gpi~p~~v~~~l~~~l~~d~ivv~D~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~----p~~~V   76 (228)
T d2ez9a3           2 QEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRH-LKLTPSNRHITSNLFATMGVGIPGAIAAKLNY----PERQV   76 (228)
T ss_dssp             CSSBCCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHH-CCCCTTCEEECCCSSCCTTCHHHHHHHHHHHC----TTSCE
T ss_pred             CCCCcCHHHHHHHHHhhCCCCeEEEEcCcHHHHHHHHH-ccCCCCceeeeecccccccccchhhhhhhhhh----cccee
Confidence            468999999999999999999999999 8788999887 99999999999999999999999999999984    88999


Q ss_pred             EEEEcCCCccccchhhhHHhh
Q psy12573         84 VCVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~  104 (315)
                      |+|+|||++.++.++|.++.+
T Consensus        77 v~i~GDG~f~m~~~EL~Ta~~   97 (228)
T d2ez9a3          77 FNLAGDGGASMTMQDLATQVQ   97 (228)
T ss_dssp             EEEEEHHHHHHHGGGHHHHHH
T ss_pred             EeecCCccccccchhhhhhcc
Confidence            999999999999999999875

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.64  E-value=7.4e-16  Score=124.00  Aligned_cols=158  Identities=24%  Similarity=0.296  Sum_probs=118.4

Q ss_pred             CCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          5 ESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      ++.||+|+++++.|++.+++|++++.| |++..|+++. +...+|++++.+..+++||+++|.+++.+++.    |+.+|
T Consensus         1 n~~pi~P~~v~~~L~~~l~~d~ii~~d~G~~~~~~~~~-l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la~----p~~~v   75 (192)
T d1ozha3           1 NQFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARY-LYTFRARQVMISNGQQTMGVALPWAIGAWLVN----PERKV   75 (192)
T ss_dssp             CCSSBCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHHT-GGGCCCSEEECCCTTCCTTCHHHHHHHHHHHS----TTSEE
T ss_pred             CCCCcCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHh-cccCCCceeecccccccccccccchhHHHhhc----ccccc
Confidence            468999999999999999999999999 7778899987 88889999999999999999999999999985    88999


Q ss_pred             EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc-------------cchhcc
Q psy12573         84 VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAA-------------GCQLVA  150 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~-------------G~~f~~  150 (315)
                      |+++|||+++++++++.++.+...                      +..++..-|+ .+|.             +..+ .
T Consensus        76 i~i~GDG~f~~~~~el~t~~~~~l----------------------~~~iiv~nN~-~~~~~~~~~~~~~~~~~~~~~-~  131 (192)
T d1ozha3          76 VSVSGDGGFLQSSMELETAVRLKA----------------------NVLHLIWVDN-GYNMVAIQEEKKYQRLSGVEF-G  131 (192)
T ss_dssp             EEEEEHHHHHHHTTHHHHHHHHTC----------------------CEEEEEEECS-BCHHHHHHHHHHHSSCCSCBC-C
T ss_pred             eeecccccccchhhhHHHHhhhcC----------------------ceeEEEEcCC-CccccccccccccCccccCcC-C
Confidence            999999999999999988765211                      1111111111 1110             1111 2


Q ss_pred             ccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        151 TCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       151 g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      ..|+..+++.  ++....+ ....++...+......++|++-.|
T Consensus       132 ~~d~~~~A~a--~G~~~~~v~~~~el~~al~~a~~~~gp~lIeV  173 (192)
T d1ozha3         132 PMDFKAYAES--FGAKGFAVESAEALEPTLRAAMDVDGPAVVAI  173 (192)
T ss_dssp             CCCHHHHHHT--TTSEEEECCSGGGHHHHHHHHHHSSSCEEEEE
T ss_pred             CCCHHHHHHH--hccccEEeCCHHHHHHHHHHHHHcCCcEEEEE
Confidence            3577777766  5555555 555566677777778888887655

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=99.59  E-value=3e-15  Score=123.47  Aligned_cols=93  Identities=23%  Similarity=0.262  Sum_probs=86.6

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVC   85 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvv   85 (315)
                      +||+|+++++.|++.+|+|.|++.| |++..|.+++ ++.+++++++++..+++||+++|.+++++++.    |+.+||+
T Consensus         1 Gpl~~~~v~~~l~~~l~~d~iiv~d~G~~~~~~~~~-~~~~~~~~~~~s~~~g~mG~~lp~aiGa~~a~----p~~~vv~   75 (229)
T d2djia3           1 GDLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRH-LHMTPKNMWRTSPLFATMGIAIPGGLGAKNTY----PDRQVWN   75 (229)
T ss_dssp             SBCCHHHHHHHHHHHSCTTCEEEECSSHHHHGGGGT-CCCCTTSEEECCCSSCCTTCHHHHHHHHHHHC----TTSCEEE
T ss_pred             CCCCHHHHHHHHHhhCCCCeEEEEcCcHhHHHHHHH-cccCCCCeEEecCCcccccccchhhhhhhhhc----ccccccc
Confidence            5899999999999999999999999 8888999888 99999999999999999999999999999984    8889999


Q ss_pred             EEcCCCccccchhhhHHhh
Q psy12573         86 VQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~  104 (315)
                      ++|||++.+++.+|.++.+
T Consensus        76 i~GDGsf~m~~~eL~ta~~   94 (229)
T d2djia3          76 IIGDGAFSMTYPDVVTNVR   94 (229)
T ss_dssp             EEEHHHHHHHGGGHHHHHH
T ss_pred             cccccccccccchhhhhhc
Confidence            9999999889999988765

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=4e-15  Score=122.42  Aligned_cols=168  Identities=17%  Similarity=0.186  Sum_probs=119.5

Q ss_pred             CCCCCCCHHHHHHHHHhhCCC---CceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCC
Q psy12573          4 DESVPLNYYAAIHAVQVSIPD---NCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP   79 (315)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~   79 (315)
                      ..+.||+|+.+++.|++.+++   |.|+++| |.++.|.+++ +...++++++++..+++||+++|.+++.+++.    |
T Consensus         6 ~~~~~i~P~~~~~~L~~~~~~~~~d~ivv~D~G~~~~~~~~~-~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA~----p   80 (227)
T d1t9ba3           6 TPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQH-WTWRNPHTFITSGGLGTMGYGLPAAIGAQVAK----P   80 (227)
T ss_dssp             CTTCCBCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHH-SCCCSTTCEECCCSSCCTTCHHHHHHHHHHHC----T
T ss_pred             CCCCCcCHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHH-cCCCCCceEeeecccccchhhHHHHHHHHhcC----C
Confidence            346799999999999998875   8899999 8889999998 99999999999999999999999999999985    8


Q ss_pred             CCeEEEEEcCCCccccchhhhHHhhhccCchh--H-HHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhh
Q psy12573         80 GKRVVCVQGDSAFGFSGMELETLAVDKEGRPK--L-DEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI  156 (315)
Q Consensus        80 ~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~  156 (315)
                      +.+||+|+|||++++++++|.+..+...+.--  . +..+...........  ....          .+ ......|+..
T Consensus        81 ~r~Vv~i~GDGsf~m~~~EL~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~~--~~~~----------~~-~~~~~~d~~~  147 (227)
T d1t9ba3          81 ESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFY--EHRY----------SH-THQLNPDFIK  147 (227)
T ss_dssp             TSEEEEEEEHHHHHHHGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHS--TTCC----------CS-CCCCCCCHHH
T ss_pred             CCeEEEeCCCcccccchHHHHHHhhcCCceEEEEEecccccchhHHHhhhh--cccc----------cc-ccCCCCCHHH
Confidence            88999999999999999999998762211000  0 000000000000000  0000          01 1123468877


Q ss_pred             hhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEE
Q psy12573        157 ATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILA  191 (315)
Q Consensus       157 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa  191 (315)
                      +++.  ++....+ ....++...+......++|++.
T Consensus       148 iA~a--~G~~~~~v~~~~el~~al~~a~~~~~p~li  181 (227)
T d1t9ba3         148 LAEA--MGLKGLRVKKQEELDAKLKEFVSTKGPVLL  181 (227)
T ss_dssp             HHHH--TTCEEEEECSHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHhh--cccceEeeCCHHHHHHHHHHHHHCCCCEEE
Confidence            7777  6666666 5666777777777778888854

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=9.5e-15  Score=116.54  Aligned_cols=160  Identities=20%  Similarity=0.246  Sum_probs=118.9

Q ss_pred             CCCCCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCC
Q psy12573          3 QDESVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGK   81 (315)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~   81 (315)
                      ..+++||+|+++++.|++.+|+|++++.| |++..|..++ ++.+.+++.+.+. +++||+++|.+++.+++.    |+.
T Consensus         6 ~~~~~~i~p~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~-~~~~~~~~~~~~~-~g~mG~~~p~AiGa~la~----p~~   79 (183)
T d1q6za3           6 DQDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQR-LNMRNPGSYYFCA-AGGLGFALPAAIGVQLAE----PER   79 (183)
T ss_dssp             CCCSSSBCHHHHHHHHHHHSCTTCEEEEECTTSHHHHHHH-CCCCSSSCEEECT-TCCTTSHHHHHHHHHHHC----TTS
T ss_pred             CCCCCCCCHHHHHHHHHHhCCCCcEEEEcCCchHHHHHHH-Hhhcccccccccc-CCCcccchhHHHhhhhhc----ccc
Confidence            45677999999999999999999999999 8888888887 8888888888764 699999999999999985    889


Q ss_pred             eEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc--------------cch
Q psy12573         82 RVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAA--------------GCQ  147 (315)
Q Consensus        82 ~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~--------------G~~  147 (315)
                      +||+++|||+++++++++.+..+..                      .| .++.++|--.+|.              +..
T Consensus        80 ~vv~i~GDG~f~~~~~el~ta~~~~----------------------lp-v~~iV~nN~~~g~~~~~~~~~~~~~~~~~~  136 (183)
T d1q6za3          80 QVIAVIGDGSANYSISALWTAAQYN----------------------IP-TIFVIMNNGTYGALRWFAGVLEAENVPGLD  136 (183)
T ss_dssp             CEEEEEEHHHHTTTGGGHHHHHHHT----------------------CC-CEEEEEECSBCHHHHHHHHHHTCCSCCSCB
T ss_pred             ceEEeccccccccccHHHHHHHHhC----------------------CC-EEEEEEeccccchhhhhhhcccccCccccc
Confidence            9999999999999999998876421                      11 1222222111110              111


Q ss_pred             hccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        148 LVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       148 f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      + ...|+..+++.  |+.+..+ ....++...+......++|++..|.
T Consensus       137 ~-~~~d~~~~a~a--~G~~~~~v~~~~el~~al~~a~~~~gp~lieV~  181 (183)
T d1q6za3         137 V-PGIDFRALAKG--YGVQALKADNLEQLKGSLQEALSAKGPVLIEVS  181 (183)
T ss_dssp             C-CCCCHHHHHHH--HTCEEEEESSHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             C-CCccHHHHHHH--cCCEEEEECCHHHHHHHHHHHHhCCCcEEEEEE
Confidence            1 23577777766  5555555 5566777777777788999987763

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.53  E-value=4.5e-14  Score=113.84  Aligned_cols=157  Identities=15%  Similarity=0.167  Sum_probs=117.4

Q ss_pred             CCCCCHHHHHHHHHhhC-----CCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCC
Q psy12573          6 SVPLNYYAAIHAVQVSI-----PDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAP   79 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~   79 (315)
                      ++.++++.+++.+++.+     |+|.++++| |.+..|.+++ +..++|++++++..+++||+++|.+++++++.    |
T Consensus         5 ~d~~~~~~v~~~l~~~~~~~~~p~d~iiv~d~G~~~~~~~~~-~~~~~p~~~~~~~~~g~mG~~lp~aiGa~~a~----p   79 (198)
T d2ihta3           5 EDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLF-ARADQPFGFLTSAGCSSFGYGIPAAIGAQMAR----P   79 (198)
T ss_dssp             SSSBCHHHHHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHH-CCCCSTTSEECCSSSCCTTCHHHHHHHHHHHS----T
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCEEEEEcCcHHHHHHHHH-cCcCCCCeEEecCCcccchhHHHHHHHHhhhh----c
Confidence            45889999999998765     679999999 7778888887 99999999999999999999999999999985    8


Q ss_pred             CCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEec---------------c
Q psy12573         80 GKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAA---------------A  144 (315)
Q Consensus        80 ~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g---------------~  144 (315)
                      +.+||+++|||++.++++++.++.+...                      |. ++.++|--..|               .
T Consensus        80 ~~~Vv~i~GDGsf~~~~~el~t~~~~~l----------------------pi-~ivV~NN~~~g~i~~~q~~~~~~~~~~  136 (198)
T d2ihta3          80 DQPTFLIAGDGGFHSNSSDLETIARLNL----------------------PI-VTVVVNNDTNGLIELYQNIGHHRSHDP  136 (198)
T ss_dssp             TSCEEEEEEHHHHHHTGGGHHHHHHHTC----------------------CC-EEEEEECSBCHHHHHHHHHHHSSCCGG
T ss_pred             ccceEeecccccccccchhhhhhhhhhh----------------------hh-hHHHhhccccceEeeeecccccccccc
Confidence            8899999999999889999988765211                      11 11111111110               0


Q ss_pred             cchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        145 GCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       145 G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      +..+ ...|+..+++.  |+....+ .-..++...+......++|++..|
T Consensus       137 ~~~~-~~~d~~~lA~a--~G~~~~~v~~~~el~~al~~a~~~~~p~lIeV  183 (198)
T d2ihta3         137 AVKF-GGVDFVALAEA--NGVDATRATNREELLAALRKGAELGRPFLIEV  183 (198)
T ss_dssp             GTBC-CCCCHHHHHHH--TTCEEEECCSHHHHHHHHHHHHTSSSCEEEEE
T ss_pred             cccc-CCcchhhhccc--cCceEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            1111 24678777777  5555555 556677777777788899988766

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.47  E-value=2.1e-13  Score=109.79  Aligned_cols=93  Identities=23%  Similarity=0.286  Sum_probs=82.1

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      ++||+|+++++.|++.+++|+||++| |.+.+|.. . +..|.+.+.+.+..+++||+++|.+++.+++.    |+.++|
T Consensus         2 ~g~l~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~-~-~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~----p~~~vv   75 (196)
T d1ovma3           2 DGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAI-D-LRLPADVNFIVQPLWGSIGYTLAAAFGAQTAC----PNRRVI   75 (196)
T ss_dssp             CSBCCHHHHHHHHHHHCCTTCEEEECTTHHHHHHT-T-CCCCSSCEEECCTTTCCTTHHHHHHHHHHHHC----TTSCEE
T ss_pred             CCccCHHHHHHHHHhhCCCCCEEEEcCCHhHHHHH-H-hccCCCCeEEeCCCCccccccchhhHHHHHhh----hcccee
Confidence            57999999999999999999999999 76666553 3 66788889999999999999999999999985    889999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +++|||++.++.++|.++.+
T Consensus        76 ~i~GDG~f~~~~~eL~ta~~   95 (196)
T d1ovma3          76 VLTGDGAAQLTIQELGSMLR   95 (196)
T ss_dssp             EEEEHHHHHHHTTHHHHHHH
T ss_pred             cccccccceeeccccccccc
Confidence            99999998888888888764

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.5e-14  Score=114.51  Aligned_cols=97  Identities=21%  Similarity=0.323  Sum_probs=86.8

Q ss_pred             CCCCCHHHHHHHHHhhCCCCceEEeC-CChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEE
Q psy12573          6 SVPLNYYAAIHAVQVSIPDNCIIVGE-GANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVV   84 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vv   84 (315)
                      +.||+|+++++.|++.+++|++|+.| |.+.+|..++  ..|++...+++..+++||+++|.+++.++..-..+|+.+||
T Consensus         2 ~~Pl~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~--~~~~~~~~~~~~~~g~mG~~l~~aiG~alaa~~~~p~~~Vv   79 (196)
T d1pvda3           2 STPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQT--TFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVI   79 (196)
T ss_dssp             TSBCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGC--CCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred             cCCcCHHHHHHHHHhhCCCCCEEEECCcHhHHHHHHh--hccCCCEEEccCCcCcccccccchhHHHHHHHhcCCCCcee
Confidence            57999999999999999999999999 8788887664  56777788999999999999999999999877778999999


Q ss_pred             EEEcCCCccccchhhhHHhh
Q psy12573         85 CVQGDSAFGFSGMELETLAV  104 (315)
Q Consensus        85 vl~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|+|||++.+++++|.++.+
T Consensus        80 ~i~GDGsf~m~~~eL~ta~~   99 (196)
T d1pvda3          80 LFIGDGSLQLTVQEISTMIR   99 (196)
T ss_dssp             EEEEHHHHHHHGGGHHHHHH
T ss_pred             eccCcccccccccccccccc
Confidence            99999998889999988865

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.43  E-value=8.8e-14  Score=112.67  Aligned_cols=93  Identities=16%  Similarity=0.219  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHhhCCCCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeEEEE
Q psy12573          7 VPLNYYAAIHAVQVSIPDNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRVVCV   86 (315)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~vvvl   86 (315)
                      .||+|+++++.|++.+++|++|++|+++..+.++. +..+++.+.+.+..+++||+++|.+++.++..    |+.++|++
T Consensus         1 ~Pl~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~l~aAiGa~la~----p~~~vv~i   75 (204)
T d1zpda3           1 APLVNAEIARQVEALLTPNTTVIAETGDSWFNAQR-MKLPNGARVEYEMQWGHIGWSVPAAFGYAVGA----PERRNILM   75 (204)
T ss_dssp             SBCCHHHHHHHHHHTCCTTEEEEECSSHHHHHHHT-CCCCTTCEEEECTTTCCTTTHHHHHHHHHHHC----TTSEEEEE
T ss_pred             CCCCHHHHHHHHHhhCCCCCEEEECchHhHHHHHH-hCCCCCCeEEcCCCCcccchhhHHHHHHHHhC----CCCceecc
Confidence            48999999999999999999999994444455554 77888999999999999999999999999985    88999999


Q ss_pred             EcCCCccccchhhhHHhh
Q psy12573         87 QGDSAFGFSGMELETLAV  104 (315)
Q Consensus        87 ~g~g~~~~aG~Dl~~~~~  104 (315)
                      +|||+++++.++|.++.+
T Consensus        76 ~GDGsf~m~~~eL~Ta~~   93 (204)
T d1zpda3          76 VGDGSFQLTAQEVAQMVR   93 (204)
T ss_dssp             EEHHHHHHHGGGHHHHHH
T ss_pred             ccccceeeeecccchhhh
Confidence            999999889999888765

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=99.39  E-value=5.2e-13  Score=106.27  Aligned_cols=158  Identities=34%  Similarity=0.488  Sum_probs=112.5

Q ss_pred             CCCCCHHHHHHHHHhhCC--CCceEEeCCChhhHhhhhhhccCCCcccccCCCCccccchHHHHHHHHHHhhhcCCCCeE
Q psy12573          6 SVPLNYYAAIHAVQVSIP--DNCIIVGEGANTMDIGRSLLLNNLPRHRLDAGTFGTMGVGLGFALAAALYCNHYAPGKRV   83 (315)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~~~~n~~~~~~~~~mg~~~~~~l~~~l~~~~~d~~~~v   83 (315)
                      +++|++..+++.|++.++  +|.|++.||++.++.++..+...+|+.++++..+++||+++|.+++.+..     ++.++
T Consensus         3 ~g~~~~~~~~~~l~~~~~~~~D~iiv~dgg~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~~aig~~a~-----~~~~v   77 (183)
T d2ji7a3           3 SGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-----TGKPV   77 (183)
T ss_dssp             TTCBCHHHHHHHHHHHHHHCCSSEEEEESSHHHHHHHHHSCCCSTTCEEECTTTTCTTCHHHHHHHHHHH-----HCSCE
T ss_pred             CCcCCHHHHHHHHHHHHhcCCCEEEEECchhHHHHHHHHhccCCCCcEEecCCccccccccchhhhhhcC-----CcceE
Confidence            478999999999999874  47888888777766666669999999999999999999999999977643     67799


Q ss_pred             EEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecc--------cchh---cccc
Q psy12573         84 VCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAA--------GCQL---VATC  152 (315)
Q Consensus        84 vvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~--------G~~f---~~g~  152 (315)
                      |+|+|||++++.+++|.++.+..                      .+ .++.++|-..+..        +...   -...
T Consensus        78 v~i~GDGsf~~~~~el~ta~~~~----------------------l~-i~iiV~NN~g~~~~~q~~~~~~~~~~~~~~~~  134 (183)
T d2ji7a3          78 IAVEGDSAFGFSGMELETICRYN----------------------LP-VTVIIMNNGGIYKGNEADPQPGVISCTRLTRG  134 (183)
T ss_dssp             EEEEEHHHHHTTGGGHHHHHHTT----------------------CC-EEEEEEECSBSSCSCCCCSBTTBCCTTBCCCC
T ss_pred             EEEEcCcchhhchhhhhhhhhcc----------------------cc-chhhhhhhhhhhhhhhcccccccccccccccc
Confidence            99999999999999988876411                      11 2233333211100        1100   1235


Q ss_pred             ChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        153 DLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       153 D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      |+..+++.  |+....+ ....++...+......++|++..|
T Consensus       135 d~~~~A~a--~G~~~~~v~~~~el~~al~~a~~~~~p~lIev  174 (183)
T d2ji7a3         135 RYDMMMEA--FGGKGYVANTPAELKAALEEAVASGKPCLINA  174 (183)
T ss_dssp             CHHHHHHH--TTCEEEEECSHHHHHHHHHHHHHHTSCEEEEE
T ss_pred             chhhhhhh--cCCcEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence            77777766  5666555 555666666766667788988655

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.1e-12  Score=107.20  Aligned_cols=151  Identities=16%  Similarity=0.251  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      .+.+++..+.++++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ ++.+.++.+....+.+         |.
T Consensus        87 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~i---------g~  157 (266)
T d1hzda_          87 KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAI---------GM  157 (266)
T ss_dssp             HHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHH---------CH
T ss_pred             HHHHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhh---------HH
Confidence            3456778889999999999999999999999999999999999999999999 9988776554332222         77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------H----HHHhhhcC------HHHHHHHHhcCCCCCH
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------A----VALTRKVP------LGVVRSMTITGIPISA  258 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~----~~l~~~~g------~~~a~~~~~~g~~~~a  258 (315)
                      ..+  .+++++++.+.+.++       .++|++..+.        .    ..+.+.+.      ....|+++..+...+.
T Consensus       158 ~~a--~~l~ltg~~~~a~eA-------~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~  228 (266)
T d1hzda_         158 SLA--KELIFSARVLDGKEA-------KAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDL  228 (266)
T ss_dssp             HHH--HHHHHHTCEEEHHHH-------HHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHH--HhhhccCCccCHHHh-------hcccccccccChhhhhhHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCH
Confidence            777  999999999999999       7777774331        1    11223221      2367778777777777


Q ss_pred             HHHHH--cCccccccCCchHHHHHHHHHHHH
Q psy12573        259 QDAYN--AGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       259 ~~a~~--~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .++++  ......++.+ +|..|...+|.+|
T Consensus       229 ~~~l~~e~~~~~~~~~s-~d~~Eg~~AF~eK  258 (266)
T d1hzda_         229 VTGLAIEEACYAQTIPT-KDRLEGLLAFKEK  258 (266)
T ss_dssp             HHHHHHHHHHHHTTTTC-HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhCC-HHHHHHHHHHhCC
Confidence            77644  4566677888 8999999888765

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.4e-12  Score=105.93  Aligned_cols=153  Identities=16%  Similarity=0.205  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIIS  194 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~  194 (315)
                      ...+.+++..+..+++|+|++|+|.++|+|..++..||++++++.++|+.|+.+ |+.+..+..+...+.         .
T Consensus        84 ~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~---------i  154 (258)
T d2fw2a1          84 VDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKM---------M  154 (258)
T ss_dssp             HHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHH---------H
T ss_pred             HHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhh---------c
Confidence            344567788899999999999999999999999999999999999999999999 998877655532221         2


Q ss_pred             cccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHH
Q psy12573        195 GVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQD  260 (315)
Q Consensus       195 G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~  260 (315)
                      |...+  .+|+++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++..+...+.++
T Consensus       155 g~~~a--~~l~l~g~~~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~~~~~~~~~l~~  225 (258)
T d2fw2a1         155 GKASA--NEMLIAGRKLTAREA-------CAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQ  225 (258)
T ss_dssp             CHHHH--HHHHTTCCEEEHHHH-------HHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccccc--chhhccCcccccccc-------cccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHhhcCCHHH
Confidence            77777  999999999999999       7778874431        11222222   1   134566665554444455


Q ss_pred             HH--HcCccccccCCchHHHHHHHHHHHH
Q psy12573        261 AY--NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       261 a~--~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ++  +.....+++.+ +|..|..++|.+|
T Consensus       226 ~~~~e~~~~~~~~~s-~d~~Egi~af~EK  253 (258)
T d2fw2a1         226 ANERECEVLRKIWSS-AQGIESMLKYVEN  253 (258)
T ss_dssp             HHHHHHHHHHHHHTS-HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHHhCC
Confidence            43  33556667777 7777777777764

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=6.2e-12  Score=107.82  Aligned_cols=129  Identities=14%  Similarity=0.059  Sum_probs=87.2

Q ss_pred             EEcCCCccccchhhhHHhhhccC---------chhHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhh
Q psy12573         86 VQGDSAFGFSGMELETLAVDKEG---------RPKLDEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAI  156 (315)
Q Consensus        86 l~g~g~~~~aG~Dl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~  156 (315)
                      +.+.|..||+|.|++........         ..........+.+++..+...++|+|++|+|.+.|+|..+++.||+++
T Consensus        77 f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~i  156 (297)
T d1q52a_          77 PKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTL  156 (297)
T ss_dssp             TTTCCCEEECCC-----------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEE
T ss_pred             ccchhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccc
Confidence            44556789999999865431110         011122223366778888999999999999999999999999999999


Q ss_pred             hhhh-cCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        157 ATTA-SKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       157 ~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      +++. +.|+.|+.+ ++++..+......+.         .|...+  .+++++++.+.+.++       .++|++..+
T Consensus       157 a~~~~~~f~~pe~~~Gl~p~~~~~~~L~r~---------iG~~~a--~~llltg~~~~a~eA-------~~~Glv~~v  216 (297)
T d1q52a_         157 ASREYARFKQTDADVGSFDGGYGSAYLARQ---------VGQKFA--REIFFLGRTYTAEQM-------HQMGAVNAV  216 (297)
T ss_dssp             EETTTCEEECCGGGGTCCCCSTTTHHHHHH---------HCHHHH--HHHHHHCCEECHHHH-------HHHTSCSEE
T ss_pred             cccccccceeeeeccccccccccccccccc---------cCccce--eeccccccccchHhh-------hhhcccccc
Confidence            8765 458999999 887754433322211         177777  999999999999999       778887554

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=7.4e-11  Score=98.59  Aligned_cols=149  Identities=21%  Similarity=0.269  Sum_probs=110.3

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ++.++..+.++++|+|++|+|.+.|+|..++..||++++.+.++|+.|+.. ++.+.. ......+.+         |+.
T Consensus        83 ~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~-~~~~l~~~~---------g~~  152 (253)
T d1uiya_          83 LMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAAL-VSVILVRAV---------GEK  152 (253)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHH-HHHHHHHHS---------CHH
T ss_pred             hhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccccc-chhhhhccc---------CHH
Confidence            456777889999999999999999999999999999999999999999998 776643 343333322         777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH-
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY-  262 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~-  262 (315)
                      .+  .+++++++.+.+.++       .++|++....        ...+.+.+   +   ....|+++......+.++++ 
T Consensus       153 ~a--~~l~l~g~~~~a~eA-------~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l~  223 (253)
T d1uiya_         153 AA--KDLLLTGRLVEAREA-------KALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFR  223 (253)
T ss_dssp             HH--HHHHHHCCEEEHHHH-------HHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred             HH--HHHhhcCcCCCHHHH-------HHhCCCcccccccccchhHHHHHHhhcccchHHHHHHHHHHHHhhcCCHHHHHH
Confidence            77  999999999999999       6677764431        11122211   1   23667777777666777664 


Q ss_pred             -HcCccccccCCchHHHHHHHHHHHH
Q psy12573        263 -NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       263 -~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       +.-.....+.+ +|..|...+|.+|
T Consensus       224 ~e~~~~~~~~~s-~d~~egi~af~eK  248 (253)
T d1uiya_         224 LAALANAWVRET-GDLAEGIRAFFEK  248 (253)
T ss_dssp             HHHHHHHHGGGC-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC-HHHHHHHHHHhCC
Confidence             44455567778 8888888888865

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=4.5e-12  Score=106.63  Aligned_cols=145  Identities=17%  Similarity=0.274  Sum_probs=107.9

Q ss_pred             HHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccchhhh
Q psy12573        124 LSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAAAAGC  202 (315)
Q Consensus       124 ~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~G~  202 (315)
                      ..+.+.++|+|++|+|.++|+|..+.+.||++++++.++|+.|+.+ |+.+..+.+....+.+         |+..+  .
T Consensus        91 ~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~i---------g~~~a--~  159 (260)
T d1mj3a_          91 DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAV---------GKSLA--M  159 (260)
T ss_dssp             GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHH---------CHHHH--H
T ss_pred             HHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHh---------CHHHH--H
Confidence            4567899999999999999999999999999999999999999999 9888665443221111         77776  9


Q ss_pred             HHHhhcCeeeeeCCceeeCCCccCCCCCCch--------HHHHhhhc---C---HHHHHHHHhcCCCCCHHHHH--HcCc
Q psy12573        203 QLVATCDLAIATTASKFSTPGARHGIFCSTP--------AVALTRKV---P---LGVVRSMTITGIPISAQDAY--NAGL  266 (315)
Q Consensus       203 ~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--------~~~l~~~~---g---~~~a~~~~~~g~~~~a~~a~--~~Gl  266 (315)
                      +++++++.+.+.++       .++|++....        ...+...+   .   ....|+++......+.++++  +...
T Consensus       160 ~l~l~g~~~~a~eA-------~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~  232 (260)
T d1mj3a_         160 EMVLTGDRISAQDA-------KQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKL  232 (260)
T ss_dssp             HHHHHCCCEEHHHH-------HHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred             HHHHcCcccCchhh-------ccCCCceeeecccccccccccccccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999999999       6777764331        11122111   1   23678888887777777664  4456


Q ss_pred             cccccCCchHHHHHHHHHHHH
Q psy12573        267 ITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       267 v~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ...++.+ +|..+..++|.+|
T Consensus       233 ~~~~~~s-~d~~egi~aFleK  252 (260)
T d1mj3a_         233 FYSTFAT-DDRREGMSAFVEK  252 (260)
T ss_dssp             HHHGGGS-HHHHHHHHHHHTT
T ss_pred             HHHHhCC-HHHHHHHHHHhCC
Confidence            6677788 8888888888765

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.96  E-value=1.1e-10  Score=100.38  Aligned_cols=96  Identities=17%  Similarity=0.207  Sum_probs=82.1

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      +++++..+..+++|+|++|||.+.|+|..++..||++++.+.++|+.|+.+ |+.|..+..++..+.         -|..
T Consensus        92 ~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~---------iG~~  162 (310)
T d1wdka4          92 ANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRL---------IGVD  162 (310)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHH---------HCHH
T ss_pred             HHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhh---------hhhh
Confidence            456778889999999999999999999999999999999999999999999 999987766543332         2777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       163 ~a--~~lll~g~~~~a~eA-------~~~Glv~~v  188 (310)
T d1wdka4         163 NA--VEWIASGKENRAEDA-------LKVSAVDAV  188 (310)
T ss_dssp             HH--HHHHHHCCCEEHHHH-------HHTTSSSEE
T ss_pred             hh--hhhhccccccCHHHH-------hhccCccEE
Confidence            66  999999999999999       778887543

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=5.4e-11  Score=100.74  Aligned_cols=155  Identities=17%  Similarity=0.221  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEE
Q psy12573        114 EIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAI  192 (315)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~  192 (315)
                      .....++..+..+.+.++|+|++|+|.+.|+|..++..||++++.+.++|+.|+.+ |+.+..+..... .+..      
T Consensus        91 ~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~-~~~~------  163 (275)
T d1dcia_          91 DLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL-PKVI------  163 (275)
T ss_dssp             HHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG-GGTC------
T ss_pred             cchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc-cccc------
Confidence            34455678888999999999999999999999999999999999999999999999 998888766533 2221      


Q ss_pred             Ecc-ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H-------HHhhhc---C---HHHHHHHHhcCCCC
Q psy12573        193 ISG-VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V-------ALTRKV---P---LGVVRSMTITGIPI  256 (315)
Q Consensus       193 v~G-~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~-------~l~~~~---g---~~~a~~~~~~g~~~  256 (315)
                        | ....  .+++++++.+.+.++       .++|++.... . .       .+...+   .   ....|+.+..+...
T Consensus       164 --g~~~~~--~~ll~~g~~~~a~eA-------~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K~~l~~~~~~  232 (275)
T d1dcia_         164 --GNRSLV--NELTFTARKMMADEA-------LDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDH  232 (275)
T ss_dssp             --SCHHHH--HHHHHHCCEEEHHHH-------HHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred             --cccccc--ccccccccccchhhh-------ccCCCceeeeehhhhhhhcccccccccccccHHHHHHHHHHHHHHhcC
Confidence              3 2222  689999999999999       7788885541 1 1       112211   1   23567777666666


Q ss_pred             CHHHHH--HcCccccccCCchHHHHHHHHHHHH
Q psy12573        257 SAQDAY--NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       257 ~a~~a~--~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      +.++++  +..+..+++.+ +|..|..++|.+|
T Consensus       233 ~l~~~~~~e~~~~~~~~~~-~d~~Egi~AfleK  264 (275)
T d1dcia_         233 SVDESLDYMATWNMSMLQT-QDIIKSVQAAMEK  264 (275)
T ss_dssp             CHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhCC-HHHHHHHHHHhCC
Confidence            666664  44566677888 8888888888875

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=98.90  E-value=9.6e-11  Score=98.80  Aligned_cols=154  Identities=16%  Similarity=0.155  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        115 IFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      ....+++++..+..+++|+|++|+|.++|+|..++..||++++++.++|..++.. ++.+..+......+.         
T Consensus        85 ~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~---------  155 (269)
T d1nzya_          85 AALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARI---------  155 (269)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccc---------
Confidence            3445678888999999999999999999999999999999999999999999998 877666544432221         


Q ss_pred             ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch--HH------HHhhhcC------HHHHHHHHhcCCCCCHH
Q psy12573        194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP--AV------ALTRKVP------LGVVRSMTITGIPISAQ  259 (315)
Q Consensus       194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~--~~------~l~~~~g------~~~a~~~~~~g~~~~a~  259 (315)
                      -|...+  .+++++++.+.+.++       .++|++....  ..      .+++.+.      ....|+.+..+...+-+
T Consensus       156 ig~~~a--~~l~ltg~~i~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~  226 (269)
T d1nzya_         156 VGMRRA--MELMLTNRTLYPEEA-------KDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVE  226 (269)
T ss_dssp             HHHHHH--HHHHHHCCCBCHHHH-------HHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cChhhh--hhccccccccchhHH-------HHcCCccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHcCCHH
Confidence            166666  999999999999999       8888887652  11      1222221      12555665555444555


Q ss_pred             HHH--HcCccccccCCchHHHHHHHHHHHH
Q psy12573        260 DAY--NAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       260 ~a~--~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      ++.  +.....+.+.+ ++..+...+|.+|
T Consensus       227 ~~~~~e~~~~~~~~~~-~~~~e~v~aflek  255 (269)
T d1nzya_         227 ECTEFEIQNVIASVTH-PHFMPCLTRFLDG  255 (269)
T ss_dssp             HHHHHHHHHHHHHHHS-TTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcC-HHHHHHHHHHHCC
Confidence            543  23333444555 5666666666554

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.1e-10  Score=97.92  Aligned_cols=149  Identities=17%  Similarity=0.226  Sum_probs=105.9

Q ss_pred             HHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        120 SDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       120 ~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ++++..+.++++|+|++|+|.++|+|..++..||++++.+.++|+.|+.. ++.+..+.+.    .+++.+     |...
T Consensus        86 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~----~l~r~~-----g~~~  156 (261)
T d1ef8a_          86 RQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIH----NLTRDA-----GFHI  156 (261)
T ss_dssp             HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHH----TTSSSS-----CHHH
T ss_pred             hhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhccccccccccccc----cccccc-----Cccc
Confidence            45667788999999999999999999999999999999999999999999 9888776554    444444     8887


Q ss_pred             hhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCch-H-H------HHhhhcC---H---HHHHHHHhcC---CCCCHHHH
Q psy12573        199 AAGCQLVATCDLAIATTASKFSTPGARHGIFCSTP-A-V------ALTRKVP---L---GVVRSMTITG---IPISAQDA  261 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~-~-~------~l~~~~g---~---~~a~~~~~~g---~~~~a~~a  261 (315)
                      +  .+++++++.+.+.++       .++|++.... . .      .+++.+.   +   ...|+.+...   ........
T Consensus       157 a--~~~~l~g~~~~a~eA-------~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~  227 (261)
T d1ef8a_         157 V--KELIFTASPITAQRA-------LAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEF  227 (261)
T ss_dssp             H--HHHHHHCCCEEHHHH-------HHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred             c--ccccccCceEcHHHH-------HHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHH
Confidence            7  999999999999999       8888886551 1 1      1222221   1   2444544322   22222221


Q ss_pred             -HHcCccccccCCchHHHHHHHHHHHH
Q psy12573        262 -YNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       262 -~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                       ....+...++.+ +|..|...+|.+|
T Consensus       228 e~~~~~~~~~~~s-~D~~Egi~AfleK  253 (261)
T d1ef8a_         228 ERIQGMRRAVYDS-EDYQEGMNAFLEK  253 (261)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHhCC
Confidence             123445566677 7777777777765

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=98.87  E-value=9.3e-11  Score=98.52  Aligned_cols=96  Identities=23%  Similarity=0.334  Sum_probs=80.5

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEcccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGVA  197 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~~  197 (315)
                      ..+++..+.++++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ ++.+..+..+..    ++.+     |..
T Consensus        92 ~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l----~~~~-----G~~  162 (263)
T d1wz8a1          92 ARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLW----PLLV-----GMA  162 (263)
T ss_dssp             HHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHT----HHHH-----CHH
T ss_pred             hhHHHHHhhhhhcceeeecccccccccccccccccccccccccccccccccccccccccccccc----cccc-----ccc
Confidence            456677888999999999999999999999999999999999999999999 988877665432    2222     777


Q ss_pred             chhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        198 AAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       198 ~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      .+  .+++++++.+.+.++       .++|++...
T Consensus       163 ~a--~~l~l~g~~i~a~eA-------~~~Glv~~v  188 (263)
T d1wz8a1         163 KA--KYHLLLNEPLTGEEA-------ERLGLVALA  188 (263)
T ss_dssp             HH--HHHHHHTCCEEHHHH-------HHHTSSSEE
T ss_pred             hh--hhhcccccccchhHH-------HhcCCcccc
Confidence            77  999999999999999       777877543

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=98.78  E-value=6.8e-10  Score=91.20  Aligned_cols=96  Identities=16%  Similarity=0.248  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      .+.+++..+.++++|+|++++|.+.|+|..++..||++++++.++|..|+.+ ++.+.++..+ ..+    .     .|+
T Consensus        82 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~-l~~----~-----iG~  151 (230)
T d2a7ka1          82 RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAI-LGF----T-----HGF  151 (230)
T ss_dssp             HHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHH----H-----HCH
T ss_pred             hhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccccc-ccc----c-----ccc
Confidence            4566778889999999999999999999999999999999999999999999 9888776432 211    1     277


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+++++++.+.+.++       .++|++...
T Consensus       152 ~~a--~~l~l~g~~~~a~eA-------~~~Glv~~v  178 (230)
T d2a7ka1         152 STM--QEIIYQCQSLDAPRC-------VDYRLVNQV  178 (230)
T ss_dssp             HHH--HHHHHHCCCBCHHHH-------HHHTCCSEE
T ss_pred             ccc--cccccccccchHHHH-------HHhhhcccC
Confidence            777  999999999999999       888888665

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.9e-10  Score=91.70  Aligned_cols=97  Identities=16%  Similarity=0.182  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        118 TCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       118 ~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      .+++++..+...++|+|++|+|.+.|+|..++..||++++++.++|+.|+.+ |+.|..+......+.+         |.
T Consensus        86 ~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~---------g~  156 (245)
T d2f6qa1          86 LLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIM---------SP  156 (245)
T ss_dssp             HHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHH---------CH
T ss_pred             HHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhccccc---------cc
Confidence            3456778899999999999999999999999999999999999999999999 9888776554332222         77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+++++++.+.+.++       .++|++...
T Consensus       157 ~~a--~~l~l~g~~~~a~eA-------~~~Glv~~v  183 (245)
T d2f6qa1         157 AKA--TEMLIFGKKLTAGEA-------CAQGLVTEV  183 (245)
T ss_dssp             HHH--HHHHTTCCCEEHHHH-------HHTTSCSEE
T ss_pred             chh--hhhcccccccccccc-------ccccccccc
Confidence            777  999999999999999       777887543

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=5.8e-10  Score=93.75  Aligned_cols=101  Identities=14%  Similarity=0.173  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhh-hhcCCCCcchh-hHHHHHHHHHHHHhcCCCcEE
Q psy12573        113 DEIFSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGYN-ILVSTCSDLMLSILRHPVPIL  190 (315)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~~~kpvI  190 (315)
                      .+++..+..++..+.+.++|+|++|+|.+.|+|..++..||++++. +.+.|+.|+.+ |+.|.++..+...+.      
T Consensus        91 ~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r~------  164 (266)
T d1pjha_          91 SNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLK------  164 (266)
T ss_dssp             HHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccccc------
Confidence            4455567778889999999999999999999999999999999975 55678999999 998877766543221      


Q ss_pred             EEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCC
Q psy12573        191 AIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCS  231 (315)
Q Consensus       191 a~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~  231 (315)
                         -|+..+  .+|+++++.+.+.++       .++|++..
T Consensus       165 ---~g~~~a--~~llltg~~~~a~eA-------~~~Glv~~  193 (266)
T d1pjha_         165 ---FGTNTT--YECLMFNKPFKYDIM-------CENGFISK  193 (266)
T ss_dssp             ---HCHHHH--HHHHHTTCCEEHHHH-------HHTTCCSE
T ss_pred             ---cccchh--hhhhccCCcCCHHHH-------HHCCCEeE
Confidence               277777  999999999999999       77777743

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.66  E-value=2.8e-09  Score=88.52  Aligned_cols=98  Identities=18%  Similarity=0.217  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCC--CCcchh-hHHHHHHHHHHHHhcCCCcEEEEE
Q psy12573        117 STCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKF--STPGYN-ILVSTCSDLMLSILRHPVPILAII  193 (315)
Q Consensus       117 ~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v  193 (315)
                      ..+++++..+...++|+|++|+|.+.|+|..++..||++++++.++|  +.|+.+ |+.+..+......+.+        
T Consensus        83 ~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~i--------  154 (249)
T d1sg4a1          83 KAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTI--------  154 (249)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHH--------
T ss_pred             hhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccccccccccccccccccccc--------
Confidence            34567788899999999999999999999999999999999988776  678888 8888766554332222        


Q ss_pred             ccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        194 SGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       194 ~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                       |+..+  .+++++++.+.+.++       .++|++...
T Consensus       155 -G~~~a--~~lll~g~~~~a~~A-------~~~Glv~~v  183 (249)
T d1sg4a1         155 -GHRAA--ERALQLGLLFPPAEA-------LQVGIVDQV  183 (249)
T ss_dssp             -CHHHH--HHHHHHTCCBCHHHH-------HHHTSSSEE
T ss_pred             -ccccc--cccccccccccHHHH-------Hhhcccccc
Confidence             77777  999999999999999       788888554

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=98.29  E-value=7e-08  Score=79.81  Aligned_cols=95  Identities=18%  Similarity=0.208  Sum_probs=76.8

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCC-Ccchh-hHHHHHHHHHHHHhcCCCcEEEEEccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFS-TPGYN-ILVSTCSDLMLSILRHPVPILAIISGV  196 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~~kpvIa~v~G~  196 (315)
                      ++.++..+.+.++|+|++++|.+.| |..+...||++++.+.++|. .|+.. ++.+.++..+...+.+         |+
T Consensus        94 ~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~i---------g~  163 (249)
T d1szoa_          94 GQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVL---------GS  163 (249)
T ss_dssp             HHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHH---------CH
T ss_pred             hhhhhhhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeecccccccccccccccccccc---------Cc
Confidence            4567778889999999999998855 66899999999999998884 68888 8888776654332222         77


Q ss_pred             cchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCc
Q psy12573        197 AAAAGCQLVATCDLAIATTASKFSTPGARHGIFCST  232 (315)
Q Consensus       197 ~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~  232 (315)
                      ..+  .+++++++.+.+.++       .++|++...
T Consensus       164 ~~a--~~l~ltg~~~~a~eA-------~~~Glv~~v  190 (249)
T d1szoa_         164 NRG--RYFLLTGQELDARTA-------LDYGAVNEV  190 (249)
T ss_dssp             HHH--HHHHHTTCEEEHHHH-------HHHTSCSEE
T ss_pred             cce--eeecccCCCCCHHHH-------HHhCCcCcc
Confidence            777  999999999999999       888888665

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.66  E-value=0.0009  Score=54.29  Aligned_cols=79  Identities=30%  Similarity=0.299  Sum_probs=54.2

Q ss_pred             CCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH----
Q psy12573        186 PVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA----  261 (315)
Q Consensus       186 ~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a----  261 (315)
                      ..|+|+.+.|+|.||+......||++++++.       ..+++.            |++..+..  +|+.++.+|.    
T Consensus       161 ~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~-------a~i~~a------------GP~vVe~~--~ge~~~~eelGga~  219 (253)
T d1on3a1         161 VVPQIAIIAGPCAGGASYSPALTDFIIMTKK-------AHMFIT------------GPQVIKSV--TGEDVTADELGGAE  219 (253)
T ss_dssp             TSCEEEEEEEEEESGGGHHHHHSSEEEEETT-------CEEESS------------CHHHHHHH--HCCCCCHHHHHSHH
T ss_pred             cceEEEEEecCcccceeeccchhhheecccc-------ceEEec------------Ccchhhhh--hCCcCChHhccCHH
Confidence            4899999999999999999999999999988       444432            22222222  3566666543    


Q ss_pred             ---HHcCccccccCCchHHHHHHHHHH
Q psy12573        262 ---YNAGLITRVVSSNEELESETKVLT  285 (315)
Q Consensus       262 ---~~~Glv~~v~~~~~~~~~~~~~~~  285 (315)
                         .+.|.++.+++++++..+.++++.
T Consensus       220 ~h~~~sG~iD~v~~~e~~a~~~~r~ll  246 (253)
T d1on3a1         220 AHMAISGNIHFVAEDDDAAELIAKKLL  246 (253)
T ss_dssp             HHHHTTCCCSEEESSHHHHHHHHHHHH
T ss_pred             HhhhccccceEEECCHHHHHHHHHHHH
Confidence               357999999998333333444443

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.45  E-value=0.0043  Score=50.24  Aligned_cols=84  Identities=19%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeee-CCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH-
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIAT-TASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA-  261 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~-~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a-  261 (315)
                      .-..|+|+.+.|++.||+......||+++.. +.       ..+++.            |++..+..  +|+.++.++. 
T Consensus       159 ~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~-------a~i~~a------------GP~vV~~~--~ge~~~~eeLG  217 (258)
T d2a7sa1         159 SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQT-------SQMFIT------------GPDVIKTV--TGEEVTMEELG  217 (258)
T ss_dssp             TTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTT-------BBCBSS------------CHHHHHHH--HCCCCCHHHHH
T ss_pred             cCCCCEEEEEecCcccHHHHHHHhccceEeecCc-------eEEEcc------------ChhHHHHh--cCCccChhhcc
Confidence            4568999999999999999999999998875 44       344443            33343433  5777877653 


Q ss_pred             ------HHcCccccccCCchHHHHHHHHHHHHH
Q psy12573        262 ------YNAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       262 ------~~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                            .+.|.++.++++.++..+.++++...|
T Consensus       218 ga~~h~~~sG~~D~v~~de~~a~~~~r~~Ls~l  250 (258)
T d2a7sa1         218 GAHTHMAKSGTAHYAASGEQDAFDYVRELLSYL  250 (258)
T ss_dssp             BHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             CHhHhhhhccccceEeCCHHHHHHHHHHHHHhC
Confidence                  456999999986355666666665544

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.28  E-value=0.0072  Score=48.95  Aligned_cols=84  Identities=15%  Similarity=0.256  Sum_probs=57.5

Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH---
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA---  261 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a---  261 (315)
                      -..|+|+.+.|++.||+......||+++..+..      ..+++.            |++..+.  .+|+.++.+|.   
T Consensus       159 ~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~------a~i~~a------------GP~vv~~--~~ge~i~~eelgga  218 (258)
T d1xnya1         159 GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQT------SHMFIT------------GPDVIKT--VTGEDVGFEELGGA  218 (258)
T ss_dssp             TTSCEEEEECSEEEGGGGHHHHHSSEEEEETTT------CEEESS------------CHHHHHH--HHCCCCCHHHHHBH
T ss_pred             CCCCEEEEEcCCcChhHHHHHHhccchhhcccc------eEEEec------------CHHHHHH--HhcCccChHHhccH
Confidence            358999999999999999999999888876531      334443            3333332  35677777664   


Q ss_pred             ----HHcCccccccCCchHHHHHHHHHHHHH
Q psy12573        262 ----YNAGLITRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       262 ----~~~Glv~~v~~~~~~~~~~~~~~~~~l  288 (315)
                          ..-|+++.++++.++..+.++++..-|
T Consensus       219 ~~h~~~sG~~d~v~~de~ea~~~~r~~Ls~l  249 (258)
T d1xnya1         219 RTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL  249 (258)
T ss_dssp             HHHHHTSSCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             HHHHhcCCeeEEEeCCHHHHHHHHHHHHHhc
Confidence                345999999987455666666665544

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.0029  Score=51.50  Aligned_cols=91  Identities=13%  Similarity=0.195  Sum_probs=61.1

Q ss_pred             HHHHhcCCCcEEEEEccccchhhhH-HHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCC-
Q psy12573        179 MLSILRHPVPILAIISGVAAAAGCQ-LVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPI-  256 (315)
Q Consensus       179 ~~~l~~~~kpvIa~v~G~~~g~G~~-l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~-  256 (315)
                      ...+.....|+|+.+.|++.||+.. +++++|++++++.       ..+|+.            |++..+.  .+|+.+ 
T Consensus       162 ~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~-------s~i~~a------------GP~vve~--~~ge~~~  220 (263)
T d2f9yb1         162 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPK-------ALIGFA------------GPRVIEQ--TVREKLP  220 (263)
T ss_dssp             HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTT-------CBEESS------------CHHHHHH--HHTSCCC
T ss_pred             HHHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecc-------eeeecc------------CHHHHhh--hcCCcCC
Confidence            3344567789999999999998865 6777788888877       344443            3333232  123333 


Q ss_pred             ----CHHHHHHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        257 ----SAQDAYNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       257 ----~a~~a~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                          +++...+.|.+|.++++ ++..+...++.+.|...
T Consensus       221 e~~g~a~~~~~~G~iD~vv~~-ee~~~~l~~~l~~L~~~  258 (263)
T d2f9yb1         221 PGFQRSEFLIEKGAIDMIVRR-PEMRLKLASILAKLMNL  258 (263)
T ss_dssp             TTTTBHHHHGGGTCCSEECCH-HHHHHHHHHHHHHHTTC
T ss_pred             hhhccHHHHHhCCCCCEEECC-HHHHHHHHHHHHHHhhC
Confidence                34445678999999988 77666666666666544

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.0011  Score=51.00  Aligned_cols=97  Identities=15%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCC---chHH-------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCS---TPAV-------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~---~~~~-------------~l~  238 (315)
                      ..+..+..++.|+...+.|.|.+.|.-++++|+  .|++.+.++|-+.+...|....   ....             .+.
T Consensus        62 ~i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a  141 (179)
T d2cbya1          62 AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNA  141 (179)
T ss_dssp             HHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677788999999999999999999999999  6999999999887766554311   1110             111


Q ss_pred             hh--cCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RK--VPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~--~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +.  ......++.+....-++++||+++|++|+++..
T Consensus       142 ~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         142 EFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            22  123355566666777999999999999999864

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.0067  Score=50.39  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEcc
Q psy12573        116 FSTCSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISG  195 (315)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G  195 (315)
                      ...-.+++........|+|..++-      .    |.....-+        |.++........+..+..+..|+|+.|.|
T Consensus       137 ~rKa~r~~~~a~~~~~Pii~~vDt------p----G~~~g~~~--------E~~g~~~~~a~~~~~~~~~~vP~i~vv~g  198 (316)
T d2f9ya1         137 YRKALRLMQMAERFKMPIITFIDT------P----GAYPGVGA--------EERGQSEAIARNLREMSRLGVPVVCTVIG  198 (316)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEE------S----CSCCSHHH--------HHTTHHHHHHHHHHHHHTCSSCEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCcceEEEEec------C----cccCCccc--------ccccHHHHHHHHHHHHHhCCCceEEEEEh
Confidence            333445566667788999988764      1    22221111        11255566667788889999999999999


Q ss_pred             ccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHH-HHhhhcCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        196 VAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAV-ALTRKVPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       196 ~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~-~l~~~~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      .+.|||...+..+|.+.+-+.++++.      +.|++.+. .+...--...+.+.    ..+++++.+++|+|+++++.
T Consensus       199 ~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeII~E  267 (316)
T d2f9ya1         199 EGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIPE  267 (316)
T ss_dssp             EEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCCC
T ss_pred             hhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhcccC
Confidence            99999999999999999999987752      12433222 22222222233333    25789999999999999964

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.018  Score=46.34  Aligned_cols=82  Identities=24%  Similarity=0.294  Sum_probs=56.4

Q ss_pred             cCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCCCHHHH--
Q psy12573        184 RHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPISAQDA--  261 (315)
Q Consensus       184 ~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~~a~~a--  261 (315)
                      .-..|+|+.+.|+|.||+......||++++.+..      ..+++.            |+...+.  .+|+.++.++.  
T Consensus       156 s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~------a~i~~a------------Gp~vv~~--~~ge~~~~eelGg  215 (251)
T d1vrga1         156 SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQT------ARMFIT------------GPNVIKA--VTGEEISQEDLGG  215 (251)
T ss_dssp             TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTT------CBCBSS------------CHHHHHH--HHCCCCCHHHHHB
T ss_pred             CCCCCEEEEEccCccccceehhhhCceEEEEccc------eeEEec------------Cchhhhh--hcCCcCChHHccc
Confidence            4578999999999999999999999999986541      233332            2333333  35677887664  


Q ss_pred             -----HHcCccccccCCchHHHHHHHHHH
Q psy12573        262 -----YNAGLITRVVSSNEELESETKVLT  285 (315)
Q Consensus       262 -----~~~Glv~~v~~~~~~~~~~~~~~~  285 (315)
                           .+.|.++.++++.++..+.++++.
T Consensus       216 a~~h~~~sG~~D~v~~de~~a~~~ir~lL  244 (251)
T d1vrga1         216 AMVHNQKSGNAHFLADNDEKAMSLVRTLL  244 (251)
T ss_dssp             HHHHHHTSCCCSEEESSHHHHHHHHHHHH
T ss_pred             hhhhhhccccceEEECCHHHHHHHHHHHH
Confidence                 356999999987334444444443

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.01  E-value=0.0027  Score=49.22  Aligned_cols=97  Identities=14%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhc--CeeeeeCCceeeCCCccCCCCCCch-------HHH-----------
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATC--DLAIATTASKFSTPGARHGIFCSTP-------AVA-----------  236 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~--d~~~a~~~a~~~~pe~~~Gl~~~~~-------~~~-----------  236 (315)
                      ..+..+..++.||...+.|.|.+.|.-+++++  +.|++.+.++|-+.+...|......       ...           
T Consensus        73 ai~d~i~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i  152 (192)
T d1y7oa1          73 AIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKI  152 (192)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            45667788999999999999999898888875  5899999999988887766542110       000           


Q ss_pred             Hhhh--cCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        237 LTRK--VPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       237 l~~~--~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +.+.  ......++.+....-++++||+++|++|+++.+
T Consensus       153 ~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         153 LAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            1111  123455666677778999999999999999865

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=96.93  E-value=0.002  Score=49.90  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTPAV----------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~  238 (315)
                      ..+..+..++.||...+.|.|.+.|.-++++|+.  |++.+.++|-+.+...|........                .++
T Consensus        75 ~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a  154 (193)
T d1tg6a1          75 AIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYA  154 (193)
T ss_dssp             HHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666778889999999999999999999999994  9999999999888776664222100                011


Q ss_pred             hh--cCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RK--VPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~--~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      ..  ......++.+....-++++||+++|++|+++..
T Consensus       155 ~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         155 KHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEccC
Confidence            11  122355566555556899999999999999864

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00071  Score=52.20  Aligned_cols=97  Identities=15%  Similarity=0.140  Sum_probs=70.0

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcC--eeeeeCCceeeCCCccCCCCCCchHH----------------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCD--LAIATTASKFSTPGARHGIFCSTPAV----------------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d--~~~a~~~a~~~~pe~~~Gl~~~~~~~----------------~l~  238 (315)
                      ..+..+..++.|+...+.|.|...|.-++++|+  .|++.+.++|.+.+...|........                .+.
T Consensus        65 ~i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~  144 (183)
T d1yg6a1          65 SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMA  144 (183)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678889999999999999999999999998  69999999998877665543111100                011


Q ss_pred             hh--cCHHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RK--VPLGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~--~g~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +.  ......++.+....-++++||+++|++|+++..
T Consensus       145 ~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         145 LHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             HHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence            11  122345555555555899999999999999875

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.85  E-value=0.0039  Score=48.16  Aligned_cols=97  Identities=12%  Similarity=0.096  Sum_probs=70.4

Q ss_pred             HHHHHHhcCCCcEEEEEccccchhhhHHHhhcCe--eeeeCCceeeCCCccCCCCCCch-----HH-----------HHh
Q psy12573        177 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDL--AIATTASKFSTPGARHGIFCSTP-----AV-----------ALT  238 (315)
Q Consensus       177 ~~~~~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~--~~a~~~a~~~~pe~~~Gl~~~~~-----~~-----------~l~  238 (315)
                      ..+..+..++.|+...+.|.+...|.-++++|+.  |++.+.++|-+.....|......     ..           .+.
T Consensus        66 ai~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a  145 (190)
T d2f6ia1          66 AILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLS  145 (190)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677889999999999999999999999995  99999999988887766542111     00           111


Q ss_pred             hhcC--HHHHHHHHhcCCCCCHHHHHHcCccccccCC
Q psy12573        239 RKVP--LGVVRSMTITGIPISAQDAYNAGLITRVVSS  273 (315)
Q Consensus       239 ~~~g--~~~a~~~~~~g~~~~a~~a~~~Glv~~v~~~  273 (315)
                      +.-|  .....+.+....-++++||+++|++|+++.+
T Consensus       146 ~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         146 SFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence            2222  2244555555666899999999999999865

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.36  E-value=0.012  Score=48.33  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=34.8

Q ss_pred             HHhcCCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeC
Q psy12573        181 SILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFST  221 (315)
Q Consensus       181 ~l~~~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~  221 (315)
                      .+.....|+|+.|.|.|.|||.+.+++||++++.+.+++.+
T Consensus       175 ~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~  215 (287)
T d1pixa2         175 ELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAV  215 (287)
T ss_dssp             HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEES
T ss_pred             HHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEE
Confidence            34556789999999999999999999999999999877655

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.96  E-value=0.071  Score=42.90  Aligned_cols=142  Identities=13%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      +.++...+...|.|..++-      .+|..|.+-.            ..+.......++..+..+..|.|..+-|.+.|+
T Consensus        93 ~fi~lc~~~~iPli~l~Dt------pGf~~G~~~E------------~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~  154 (264)
T d1vrga2          93 RFIRFLDAFNIPILTFVDT------PGYLPGVAQE------------HGGIIRHGAKLLYAYSEATVPKITVILRKAYGG  154 (264)
T ss_dssp             HHHHHHHHTTCCEEEEEEE------CCBCCCHHHH------------HTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHH
T ss_pred             HHHHHHHHhCCceEEEeec------ccccccHHHH------------HHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccH
Confidence            4444456678898887764      2333332211            115666677888899999999999999999997


Q ss_pred             hhHHHh----hcCeeeeeCCceeeCCCccCCCCCCchHH-HH-hhhc---C-H-HHHHHHH--hcCCCCCHHHHHHcCcc
Q psy12573        201 GCQLVA----TCDLAIATTASKFSTPGARHGIFCSTPAV-AL-TRKV---P-L-GVVRSMT--ITGIPISAQDAYNAGLI  267 (315)
Q Consensus       201 G~~l~l----~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~-~l-~~~~---g-~-~~a~~~~--~~g~~~~a~~a~~~Glv  267 (315)
                      |..-+.    .+|++++-+.       .++|+....++. .+ .+.+   . . ...+++.  +.-+.-++..+.+.|++
T Consensus       155 g~~am~~~~~~~d~~~awP~-------a~~~vm~pe~aa~v~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~i  227 (264)
T d1vrga2         155 AYIAMGSKHLGADMVLAWPS-------AEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYV  227 (264)
T ss_dssp             HHHHTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSS
T ss_pred             HhhhccCCccCCCeeeeccc-------eeEEecCHHHhhhhhhhhhhhhhhCcHHHHHHHHHHHHHHhcCHHHHHHcCCC
Confidence            764332    3666666666       555555332221 11 1111   1 1 1111111  11122467788899999


Q ss_pred             ccccCCchHHHHHHHHHHHHH
Q psy12573        268 TRVVSSNEELESETKVLTSAI  288 (315)
Q Consensus       268 ~~v~~~~~~~~~~~~~~~~~l  288 (315)
                      +.+++. .+.........+.+
T Consensus       228 D~VIdP-~dTR~~L~~~Le~l  247 (264)
T d1vrga2         228 DMVIDP-RETRKYIMRALEVC  247 (264)
T ss_dssp             SEECCG-GGHHHHHHHHHHHH
T ss_pred             CeeECH-HHHHHHHHHHHHHH
Confidence            999998 77776655555444

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.037  Score=45.90  Aligned_cols=68  Identities=18%  Similarity=0.216  Sum_probs=48.1

Q ss_pred             CCCcEEEEEccccchhhhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHhhhcCHHHHHHHHhcCCCC--CHHH--
Q psy12573        185 HPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALTRKVPLGVVRSMTITGIPI--SAQD--  260 (315)
Q Consensus       185 ~~kpvIa~v~G~~~g~G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~~~~g~~~a~~~~~~g~~~--~a~~--  260 (315)
                      -..|+|+.|.|+|+|+|.+++..||+++..+++       .+.+.            |+...+.+  +|+.+  +.+|  
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s-------~i~lt------------Gp~~l~~~--lG~eVy~s~~eLG  297 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQ-------PIILT------------GAPAINKM--LGREVYTSNLQLG  297 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTC-------CEESS------------CHHHHHHH--SSSCCCSCTHHHH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCc-------eEEee------------CHHHHHHh--cCccccCChhHhC
Confidence            368999999999999999999999999999883       33332            22222222  24443  3332  


Q ss_pred             ----HHHcCccccccCC
Q psy12573        261 ----AYNAGLITRVVSS  273 (315)
Q Consensus       261 ----a~~~Glv~~v~~~  273 (315)
                          ..+-|.++.++++
T Consensus       298 G~~i~~~nGv~h~~a~d  314 (333)
T d1uyra1         298 GTQIMYNNGVSHLTAVD  314 (333)
T ss_dssp             SHHHHHHHTSSSEEESS
T ss_pred             CHhHHhhCCCceEEeCC
Confidence                3568999999987

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.60  E-value=0.24  Score=39.82  Aligned_cols=139  Identities=14%  Similarity=0.215  Sum_probs=82.1

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      +.+....+...|.|..++-      .+|..|.+..            ..+.......++..+..+..|.|..+-|.+.|+
T Consensus        96 rfi~lc~~~~iPlv~l~dt------pGf~~G~~~E------------~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~  157 (271)
T d2a7sa2          96 RFVRTCDCFNIPIVMLVDV------PGFLPGTDQE------------YNGIIRRGAKLLYAYGEATVPKITVITRKAYGG  157 (271)
T ss_dssp             HHHHHHHHTTCCEEEEEEE------CCBCCCHHHH------------HHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHH
T ss_pred             HHHHHHHHhCCceEEeech------hhhhhhccHH------------HhhHHHHHHHHHHHHHhCCCCeEEEEeCCccch
Confidence            4445556678899887764      2333332211            115666667788899999999999999999997


Q ss_pred             hhHHHh----hcCeeeeeCCceeeCCCccCCCCCCchHH--HHhhhcCH-------------HHHHHHHhcCCCCCHHHH
Q psy12573        201 GCQLVA----TCDLAIATTASKFSTPGARHGIFCSTPAV--ALTRKVPL-------------GVVRSMTITGIPISAQDA  261 (315)
Q Consensus       201 G~~l~l----~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~--~l~~~~g~-------------~~a~~~~~~g~~~~a~~a  261 (315)
                      |...+.    .+|++++-+.       .++|..+..++.  ...+.+..             ....+  ......++..+
T Consensus       158 ~~~am~~~~~~~d~~~AwP~-------A~igvMgpegaa~v~~~~~l~~~~~~~~~~~~~~~~~~~e--~~e~~~~p~~a  228 (271)
T d2a7sa2         158 AYCVMGSKDMGCDVNLAWPT-------AQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQE--YEDTLVNPYVA  228 (271)
T ss_dssp             HHHHTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTTTTTTGGGTSSCCTTSSTTHHHHH--HHTTTSBSHHH
T ss_pred             hhhhhcccccccceEEEecc-------eeEeecCHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHH--HHHHhcCHHHH
Confidence            644332    2466666666       555555332221  11111111             11111  12233456778


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHH
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSA  287 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~  287 (315)
                      .+.|+++.+++. .+..+......+-
T Consensus       229 a~~g~iD~VIdP-~dTR~~L~~~L~~  253 (271)
T d2a7sa2         229 AERGYVDAVIPP-SHTRGYIGTALRL  253 (271)
T ss_dssp             HHHTSSSEECCG-GGHHHHHHHHHHH
T ss_pred             HHcCCCCeeECH-HHHHHHHHHHHHH
Confidence            889999999998 7776665444443

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=94.59  E-value=0.2  Score=40.17  Aligned_cols=147  Identities=9%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      +.+........|+|..++-      .+|..|.+.            |..+.......++..+.++..|.|+.+-|.+.|+
T Consensus        93 rfi~lc~~~~iPlv~l~D~------pGf~~G~~~------------E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~  154 (264)
T d1on3a2          93 EFVNFCDSFNIPLVQLVDV------PGFLPGVQQ------------EYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGG  154 (264)
T ss_dssp             HHHHHHHHTTCCEEEEEEE------CCBCCCHHH------------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHH
T ss_pred             HHHHHHHhcCCceEEEecc------ccccccHHH------------HHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCc
Confidence            3444455677899887764      234333221            1126677777888899999999999999999997


Q ss_pred             hhHHHhhcCeeeeeCCceeeCCCccCCCCCCchHHHHh--hhc----CHH-HHHHHH--hcCCCCCHHHHHHcCcccccc
Q psy12573        201 GCQLVATCDLAIATTASKFSTPGARHGIFCSTPAVALT--RKV----PLG-VVRSMT--ITGIPISAQDAYNAGLITRVV  271 (315)
Q Consensus       201 G~~l~l~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~~l~--~~~----g~~-~a~~~~--~~g~~~~a~~a~~~Glv~~v~  271 (315)
                      |..-+....+   ..+..|.+|-.++|..+..++..+.  +.+    ... .-.+.+  ...+.-++..+.+.|+++.++
T Consensus       155 g~~am~g~~~---~~d~~~aWP~A~~~vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e~~~~~~~p~~aA~~g~iD~VI  231 (264)
T d1on3a2         155 SYLAMCNRDL---GADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVI  231 (264)
T ss_dssp             HHHTTTCGGG---TCSEEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEEC
T ss_pred             cccccccccC---ChhheeeHHhhHhhhccHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHhcCHHHHHHcCCCCeeE
Confidence            6554432211   2234455666777776443332111  111    100 001111  111223567788899999999


Q ss_pred             CCchHHHHHHHHHHHHHH
Q psy12573        272 SSNEELESETKVLTSAIL  289 (315)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~  289 (315)
                      +. .+..+......+.+.
T Consensus       232 dP-~eTR~~L~~aLe~~~  248 (264)
T d1on3a2         232 DP-ADTRRKIASALEMYA  248 (264)
T ss_dssp             CG-GGHHHHHHHHHHHGG
T ss_pred             CH-HHHHHHHHHHHHHHh
Confidence            88 777666655555544

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.16  E-value=0.25  Score=39.52  Aligned_cols=141  Identities=14%  Similarity=0.228  Sum_probs=83.7

Q ss_pred             HHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccchh
Q psy12573        121 DLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAAAA  200 (315)
Q Consensus       121 ~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g~  200 (315)
                      +.+....+..-|+|..++-      .+|..|.+-            |..+.......++..+..+..|.|..+.|.+.|+
T Consensus        91 ~fi~lc~~~~iPli~l~d~------pGf~~G~~~------------E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gg  152 (263)
T d1xnya2          91 RFVRTCDAFNVPVLTFVDV------PGFLPGVDQ------------EHDGIIRRGAKLIFAYAEATVPLITVITRKAFGG  152 (263)
T ss_dssp             HHHHHHHHTTCCEEEEEEE------CCBCCCHHH------------HHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHH
T ss_pred             HHHHHHHHhCCceEEeecc------cccccchhH------------HHHhHHHHHHHHHHHHHccCCCeEEEEecCcccc
Confidence            4445556678898887764      233333221            1125666677788899999999999999999997


Q ss_pred             hhHHHh----hcCeeeeeCCceeeCCCccCCCCCCchHH-HH-hhhc----C------HHHHHHHHhcCCCCCHHHHHHc
Q psy12573        201 GCQLVA----TCDLAIATTASKFSTPGARHGIFCSTPAV-AL-TRKV----P------LGVVRSMTITGIPISAQDAYNA  264 (315)
Q Consensus       201 G~~l~l----~~d~~~a~~~a~~~~pe~~~Gl~~~~~~~-~l-~~~~----g------~~~a~~~~~~g~~~~a~~a~~~  264 (315)
                      |...+.    ..|++++-+.       .++|+.+..++. .+ .+..    .      ....++..  -...++..+...
T Consensus       153 a~~~m~~~~~~~d~~~awP~-------a~~gvm~pe~aa~il~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~p~~aA~~  223 (263)
T d1xnya2         153 AYDVMGSKHLGADLNLAWPT-------AQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYE--DALLNPYTAAER  223 (263)
T ss_dssp             HHHHTTCGGGTCSEEEECTT-------CEEESSCHHHHHHHHTHHHHHSCCTTCSSSHHHHHHHHH--HHHSSSHHHHHH
T ss_pred             ceeccCCcccCCcEEEEcch-------hhhhccCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH--HHhcCHHHHHHc
Confidence            665533    2466766666       555655333221 11 1110    0      00111111  011345667788


Q ss_pred             CccccccCCchHHHHHHHHHHHHHH
Q psy12573        265 GLITRVVSSNEELESETKVLTSAIL  289 (315)
Q Consensus       265 Glv~~v~~~~~~~~~~~~~~~~~l~  289 (315)
                      |.++.+++. .+..+...+..+.+.
T Consensus       224 g~iD~VIdP-~dTR~~L~~~L~~l~  247 (263)
T d1xnya2         224 GYVDAVIMP-SDTRRHIVRGLRQLR  247 (263)
T ss_dssp             TSSSEECCG-GGHHHHHHHHHHHHT
T ss_pred             ccCCcccCH-HHHHHHHHHHHHHHh
Confidence            999999998 887776666555553

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=92.44  E-value=0.87  Score=36.94  Aligned_cols=151  Identities=15%  Similarity=0.180  Sum_probs=88.1

Q ss_pred             HHHHHHHHHcCCCcEEEEEeeEEecccchhccccChhhhhhhcCCCCcchhhHHHHHHHHHHHHhcCCCcEEEEEccccc
Q psy12573        119 CSDLMLSILRHPVPILAIISGVAAAAGCQLVATCDLAIATTASKFSTPGYNILVSTCSDLMLSILRHPVPILAIISGVAA  198 (315)
Q Consensus       119 ~~~~~~~~~~~~~~~i~~v~G~~~g~G~~f~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~~~  198 (315)
                      ..+.+....+...|+|..++.      .+|..|.+-.            ..+.......++..+..+..|.|+.+-|.+.
T Consensus       107 ~~rfi~lc~~~~iPlv~l~D~------pGf~~g~~~E------------~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~  168 (299)
T d1pixa3         107 MNEFVTLCARDRLPIVWIQDT------TGIDVGNDAE------------KAELLGLGQSLIYSIQTSHIPQFEITLRKGT  168 (299)
T ss_dssp             HHHHHHHHHHTTCCEEEEECC------CEECCSHHHH------------HTTHHHHHHHHHHHHHTCCCCEEEEECSEEE
T ss_pred             HHHHHHHHHHcCCeEEEEEeC------CCcccchHHH------------hhhHHHHHHHHHHHHHhhcceeEEEEecccc
Confidence            344555566778899988765      2343332211            1155666667888889999999999999999


Q ss_pred             hhhhHHHhhcCeeeeeCCce--eeCCCccCCCCCCchHH--HHhhhcCH------------HHHHHHHhc-CCCCCHHHH
Q psy12573        199 AAGCQLVATCDLAIATTASK--FSTPGARHGIFCSTPAV--ALTRKVPL------------GVVRSMTIT-GIPISAQDA  261 (315)
Q Consensus       199 g~G~~l~l~~d~~~a~~~a~--~~~pe~~~Gl~~~~~~~--~l~~~~g~------------~~a~~~~~~-g~~~~a~~a  261 (315)
                      |+|... +++.-  ...+..  +..|..++|..+..++.  ...+.+..            ...++++.. -+..++..+
T Consensus       169 G~a~~a-m~g~~--~~~~~~~~~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~~~sp~~a  245 (299)
T d1pixa3         169 AAAHYV-LGGPQ--GNDTNAFSIGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVC  245 (299)
T ss_dssp             TTHHHH-TTCTT--CTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred             cccccc-cccCc--cCcccceecCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCHHHH
Confidence            977553 33211  112222  24455677766433221  11111110            011111111 123577788


Q ss_pred             HHcCccccccCCchHHHHHHHHHHHHHHhC
Q psy12573        262 YNAGLITRVVSSNEELESETKVLTSAILEN  291 (315)
Q Consensus       262 ~~~Glv~~v~~~~~~~~~~~~~~~~~l~~~  291 (315)
                      .+.|+++.+++. .+.........+.+.++
T Consensus       246 As~~~iD~IIDP-~dTR~~L~~~Le~~~~~  274 (299)
T d1pixa3         246 AELGLVDEIVDM-NKIRGYVEAFTEAAYQN  274 (299)
T ss_dssp             HHHTSSSEECCT-TTHHHHHHHHHHHHTTS
T ss_pred             HHhCCcCeeECH-HHHHHHHHHHHHHHHhC
Confidence            899999999998 88887776666655543

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=82.87  E-value=1.9  Score=33.98  Aligned_cols=89  Identities=12%  Similarity=0.130  Sum_probs=53.8

Q ss_pred             ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573         58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII  137 (315)
Q Consensus        58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  137 (315)
                      |+||......+..+.+.+.. ....+|.|.-.|+..+-     +-..       .......+...... .....|.|+++
T Consensus       102 GS~g~~~~~K~~r~~e~A~~-~~lPlI~l~dsgGarm~-----e~~~-------~~~~~~~~~~~~~~-~s~~vP~I~vv  167 (258)
T d1xnya1         102 GALGEVYGQKIVKVMDFALK-TGCPVVGINDSGGARIQ-----EGVA-------SLGAYGEIFRRNTH-ASGVIPQISLV  167 (258)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH-HTCCEEEEECCCSBCGG-----GTHH-------HHHHHHHHHHHHHH-TTTTSCEEEEE
T ss_pred             CccchhhHHHHHHHHHHHHH-cCCceEEEecCCCcccC-----cccc-------cccchhHHHHHHHH-HcCCCCEEEEE
Confidence            77887777777777766555 35678888665554432     1100       00011111111122 23457999999


Q ss_pred             eeEEecccchhccccChhhhhhh
Q psy12573        138 SGVAAAAGCQLVATCDLAIATTA  160 (315)
Q Consensus       138 ~G~~~g~G~~f~~g~D~~~~~~~  160 (315)
                      .|.++|++....+.+|+.++.+.
T Consensus       168 ~G~~~gG~a~~~~~~~~vim~~~  190 (258)
T d1xnya1         168 VGPCAGGAVYSPAITDFTVMVDQ  190 (258)
T ss_dssp             CSEEEGGGGHHHHHSSEEEEETT
T ss_pred             cCCcChhHHHHHHhccchhhccc
Confidence            99999998877777888776553

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=81.43  E-value=5.4  Score=33.50  Aligned_cols=120  Identities=14%  Similarity=0.043  Sum_probs=72.7

Q ss_pred             ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573         58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII  137 (315)
Q Consensus        58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  137 (315)
                      +.+|..+|.+.|.++..-....+.-+|++.|||.  ++-+++.+...                  +..+.+.|...++.=
T Consensus       181 ~~vg~q~p~AvG~A~a~k~~~~~~v~v~~~GDGa--~~eG~f~EalN------------------~A~~~~lPvifv~eN  240 (407)
T d1qs0a_         181 GNLATQFVQAVGWAMASAIKGDTKIASAWIGDGA--TAESDFHTALT------------------FAHVYRAPVILNVVN  240 (407)
T ss_dssp             SSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGG--GGSHHHHHHHH------------------HHHHHTCCEEEEEEE
T ss_pred             cccccccchhhhhHHHHhhccCcceecccccccc--cccchHHHHHH------------------HHhccCcceEEEEEE
Confidence            6789999999999998766666667899999985  44444433321                  122344555555566


Q ss_pred             eeEEecccchhccc--cChhhhhhhcCCCCcchh-------hHHHHHHHHHHHHhcCCCcEEEEEccccch
Q psy12573        138 SGVAAAAGCQLVAT--CDLAIATTASKFSTPGYN-------ILVSTCSDLMLSILRHPVPILAIISGVAAA  199 (315)
Q Consensus       138 ~G~~~g~G~~f~~g--~D~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~kpvIa~v~G~~~g  199 (315)
                      |+++++.......+  .++......  |+.+..+       ..+..........+.-.+|++-.+.-+-.+
T Consensus       241 N~~aist~~~~~~~~~~~~~~ra~~--~Gi~~~~VDGnD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~  309 (407)
T d1qs0a_         241 NQWAISTFQAIAGGESTTFAGRGVG--CGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG  309 (407)
T ss_dssp             CSEETTEEGGGGTTTTCCSTHHHHH--TTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCS
T ss_pred             ecccccccchhhhccchhHHHHHHh--cCcceEEeccccHHHHHHHHHHHHHHHhcCCCceEEEEeeecCC
Confidence            77666554333222  234333222  4554432       334455566667777888998877766665

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=80.58  E-value=1.8  Score=34.09  Aligned_cols=90  Identities=17%  Similarity=0.161  Sum_probs=52.2

Q ss_pred             ccccchHHHHHHHHHHhhhcCCCCeEEEEEcCCCccccchhhhHHhhhccCchhHHHHHHHHHHHHHHHHcCCCcEEEEE
Q psy12573         58 GTMGVGLGFALAAALYCNHYAPGKRVVCVQGDSAFGFSGMELETLAVDKEGRPKLDEIFSTCSDLMLSILRHPVPILAII  137 (315)
Q Consensus        58 ~~mg~~~~~~l~~~l~~~~~d~~~~vvvl~g~g~~~~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  137 (315)
                      |++|......+..+.+.+.+ ...++|.+.-.|+..     +.+-.      .... .+......+..+ +...|.|+++
T Consensus       103 GS~g~~~~~K~~~a~e~A~~-~~lPlV~l~~sgG~r-----~~eg~------~~l~-~~~~~~~~~~~l-s~~vP~i~vv  168 (253)
T d1on3a1         103 GSAGETQSTKVVETMEQALL-TGTPFLFFYDSGGAR-----IQEGI------DSLS-GYGKMFFANVKL-SGVVPQIAII  168 (253)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH-HTCCEEEEEEECSBC-----GGGTH------HHHH-HHHHHHHHHHHH-TTTSCEEEEE
T ss_pred             ccceecccchhhhhHHHHhh-cCCCeEEEEecCCCc-----ccccc------eecc-ccceehHHHHHH-hccceEEEEE
Confidence            77887777777777766555 346677774333222     22110      0000 011111112222 2358999999


Q ss_pred             eeEEecccchhccccChhhhhhhc
Q psy12573        138 SGVAAAAGCQLVATCDLAIATTAS  161 (315)
Q Consensus       138 ~G~~~g~G~~f~~g~D~~~~~~~~  161 (315)
                      .|.++|++....+.+|+.++.+.+
T Consensus       169 ~Gp~~GG~a~~~~~~d~vi~~~~a  192 (253)
T d1on3a1         169 AGPCAGGASYSPALTDFIIMTKKA  192 (253)
T ss_dssp             EEEEESGGGHHHHHSSEEEEETTC
T ss_pred             ecCcccceeeccchhhheeccccc
Confidence            999999887766778988776653