Psyllid ID: psy12586

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MNTEHATVDLPIRSSKKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIFQKHH
cccccEEEEcccEEEEcccEEEEEcEEEEcccccccccEEcEEEccccccccccEEEEEEEEcccccccccccccccEEEEEEEEEEEEEEccccccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHEEEEcccccccEEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHEEEEEEEEEEEccccccccccccHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
ccccEEEEEEccEEEEccccEEEccccEEEEEEccccccEEEEEcEEEEcccEEEEEEEEEEccccccHHHHcccccEEEEEcccccccEcccccccccccHEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccc
mntehatvdlpirsskkplpirkipseiklsltseewvptylrfpnliiYFPLFLLQLDLLkereegdttnyqvngeFDLLSYSsvknvvnysccvepypdityyislrrrpmfyvFNLILPCILINCIALLVFyvpsesgekVTLGISALLSMTVFLMTIRetlppteniseyVLVSSDHFRVKYIIVADellptryrgraqsqeftlpeqvrplasLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEhlkhpifqkhh
mntehatvdlpirsskkplpirkipseiklsltseeWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRaqsqeftlpeqvrplaSLETSHKTLNKVirqtnqrvnaleyvviprlaRTLDYIKSeldemereefyrlkkiqdkkreaLERRTREQIERHLKeeeehlkhpifqkhh
MNTEHATVDLPIRSSKKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLIIYFPlfllqldllKEREEGDTTNYQVNGEFDLLsyssvknvvnysccvEPYPDITYYISLRRRPMFYVFnlilpcilinciallVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERhlkeeeehlkhPIFQKHH
**************************EIKLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRG************************TLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSEL**************************************************
***EHATVDLPIRSSKKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLASLETSHKTLN***************************************************************************P******
********DLPIRSSKKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHLKHPIFQKHH
*NTEHATVDLPIRSSKKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLASLETSHKTLNKVIRQTNQ***************TLDYIKSELDEMEREEFYRLKKIQDKKREALERRTREQIERHLKEEEEHL*********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MNTEHATVDLPIRSSKKPLPIRKIPSEIKLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPxxxxxxxxxxxxxxxxxxxxxVNALEYVVxxxxxxxxxxxxxxxxxxxxxEFYRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHLKHPIFQKHH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query309 2.2.26 [Sep-21-2011]
Q9I8C7452 Neuronal acetylcholine re yes N/A 0.372 0.254 0.486 1e-30
Q9PTS8484 Neuronal acetylcholine re no N/A 0.372 0.237 0.460 9e-30
Q8JFN7 572 Neuronal acetylcholine re N/A N/A 0.372 0.201 0.460 2e-29
Q68RJ7 550 Neuronal acetylcholine re N/A N/A 0.372 0.209 0.460 1e-28
P49582502 Neuronal acetylcholine re yes N/A 0.417 0.256 0.447 2e-28
Q05941502 Neuronal acetylcholine re yes N/A 0.417 0.256 0.447 2e-28
P43144479 Neuronal acetylcholine re no N/A 0.372 0.240 0.443 5e-28
Q9UGM1479 Neuronal acetylcholine re yes N/A 0.372 0.240 0.443 5e-28
P22770502 Neuronal acetylcholine re no N/A 0.417 0.256 0.440 1e-27
P54131499 Neuronal acetylcholine re no N/A 0.417 0.258 0.440 2e-27
>sp|Q9I8C7|ACH10_CHICK Neuronal acetylcholine receptor subunit alpha-10 OS=Gallus gallus GN=CHRNA10 PE=3 SV=1 Back     alignment and function desciption
 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 88/115 (76%)

Query: 57  QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYV 116
           Q+DL    + GD T++  N E+++L   + +NVV Y CC EPYPD+TY + LRRR  FY+
Sbjct: 183 QIDLRNLLDTGDLTDFVENVEWEVLGMPATRNVVTYGCCSEPYPDVTYTLLLRRRASFYI 242

Query: 117 FNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENI 171
           FNL+LPC++I+ +A L FY+P++SGEKV+LG++ LL++TVF + + E++PP+E++
Sbjct: 243 FNLLLPCVMISFLAPLGFYLPADSGEKVSLGVTVLLALTVFQLLVAESMPPSESV 297
Ionotropic receptor with a probable role in the modulation of auditory stimuli.
Gallus gallus (taxid: 9031)
>sp|Q9PTS8|ACHA9_CHICK Neuronal acetylcholine receptor subunit alpha-9 OS=Gallus gallus GN=CHRNA9 PE=2 SV=1 Back     alignment and function description
>sp|Q8JFN7|ACH91_ONCMY Neuronal acetylcholine receptor subunit alpha-9-I OS=Oncorhynchus mykiss GN=nachra9 PE=2 SV=1 Back     alignment and function description
>sp|Q68RJ7|ACH92_ONCMY Neuronal acetylcholine receptor subunit alpha-9-II OS=Oncorhynchus mykiss PE=2 SV=1 Back     alignment and function description
>sp|P49582|ACHA7_MOUSE Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus GN=Chrna7 PE=2 SV=1 Back     alignment and function description
>sp|Q05941|ACHA7_RAT Neuronal acetylcholine receptor subunit alpha-7 OS=Rattus norvegicus GN=Chrna7 PE=1 SV=2 Back     alignment and function description
>sp|P43144|ACHA9_RAT Neuronal acetylcholine receptor subunit alpha-9 OS=Rattus norvegicus GN=Chrna9 PE=1 SV=2 Back     alignment and function description
>sp|Q9UGM1|ACHA9_HUMAN Neuronal acetylcholine receptor subunit alpha-9 OS=Homo sapiens GN=CHRNA9 PE=1 SV=2 Back     alignment and function description
>sp|P22770|ACHA7_CHICK Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus GN=CHRNA7 PE=1 SV=1 Back     alignment and function description
>sp|P54131|ACHA7_BOVIN Neuronal acetylcholine receptor subunit alpha-7 OS=Bos taurus GN=CHRNA7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
242117926 477 nicotinic acetylcholine receptor alpha 5 0.721 0.467 0.497 2e-49
221222645 477 nicotinic acetylcholine receptor subunit 0.721 0.467 0.497 2e-49
157954039 649 nicotinic acetylcholine receptor alpha 5 0.394 0.187 0.784 3e-48
157783832 478 nicotinic acetylcholine receptor alpha 5 0.401 0.259 0.771 3e-48
290560638 499 nicotinic acetylcholine receptor subunit 0.401 0.248 0.771 4e-48
158186750329 nicotinic acetylcholine receptor subunit 0.401 0.376 0.771 8e-48
383858569 481 PREDICTED: neuronal acetylcholine recept 0.394 0.253 0.768 6e-47
66537889 416 PREDICTED: neuronal acetylcholine recept 0.394 0.293 0.768 8e-47
45686195 461 neuronal nicotinic acetylcholine Apisa7- 0.394 0.264 0.768 8e-47
340725535 480 PREDICTED: neuronal acetylcholine recept 0.394 0.254 0.776 9e-47
>gi|242117926|ref|NP_001155994.1| nicotinic acetylcholine receptor alpha 5 subunit isoform 2 precursor [Tribolium castaneum] gi|157783850|gb|ABV72696.1| nicotinic acetylcholine receptor alpha 5 subunit [Tribolium castaneum] gi|221222663|gb|ACM09854.1| nicotinic acetylcholine receptor subunit a5 [Tribolium castaneum] gi|221222665|gb|ACM09855.1| nicotinic acetylcholine receptor subunit a5 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/243 (49%), Positives = 154/243 (63%), Gaps = 20/243 (8%)

Query: 57  QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYV 116
           Q++L K+ EEGD +NYQ NGEFDL+S+SSVK++  YSCC EPYPDITY I L+RRP+FYV
Sbjct: 172 QVELAKQTEEGDVSNYQANGEFDLISFSSVKHIEFYSCCPEPYPDITYTIKLKRRPLFYV 231

Query: 117 FNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEN---ISE 173
           FNLILPCILIN IALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTE    IS 
Sbjct: 232 FNLILPCILINGIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEKTPLISM 291

Query: 174 YVLVSSD--HFRVKYIIVADELLPTRYRGRAQSQ--EFTLPEQVRPLASL--ETSHKTLN 227
           Y  VS     F     +V   +     RG A  +     + +++ PL  +  ET+++  N
Sbjct: 292 YYGVSICLVSFASGLSVVTLNIYHRGVRGSAVPKIIRTVVLDKLAPLVFMRFETNNRHRN 351

Query: 228 KVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQDKKREALERRTRE 287
             I++ N           P+    LD      D+M +E+ Y L++ Q +    + R   E
Sbjct: 352 SQIQEIN-----------PQTGTRLDCPWPWTDKMPQEDGYCLQQRQQRSPRFVPRHRVE 400

Query: 288 QIE 290
            ++
Sbjct: 401 DLD 403

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|221222645|gb|ACM09845.1| nicotinic acetylcholine receptor subunit a5 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157954039|ref|NP_001103252.1| nicotinic acetylcholine receptor alpha 5 subunit isoform 1 precursor [Tribolium castaneum] gi|154810977|gb|ABS86907.1| nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum] gi|270006448|gb|EFA02896.1| nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157783832|gb|ABV72687.1| nicotinic acetylcholine receptor alpha 5 subunit [Bombyx mori] Back     alignment and taxonomy information
>gi|290560638|ref|NP_001166811.1| nicotinic acetylcholine receptor subunit alpha 5 isoform A precursor [Bombyx mori] Back     alignment and taxonomy information
>gi|158186750|ref|NP_001103392.1| nicotinic acetylcholine receptor subunit alpha 5 isoform B precursor [Bombyx mori] gi|157367296|gb|ABV45516.1| nicotinic acetylcholine receptor subunit alpha 5 mRNA transcript variant 1 [Bombyx mori] Back     alignment and taxonomy information
>gi|383858569|ref|XP_003704773.1| PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|66537889|ref|XP_625040.1| PREDICTED: neuronal acetylcholine receptor subunit alpha-10, partial [Apis mellifera] Back     alignment and taxonomy information
>gi|45686195|gb|AAS75781.1| neuronal nicotinic acetylcholine Apisa7-2 subunit [Apis mellifera] Back     alignment and taxonomy information
>gi|340725535|ref|XP_003401124.1| PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query309
FB|FBgn0040377249 Vha36-3 "Vacuolar H[+] ATPase 0.245 0.305 0.644 1e-20
FB|FBgn0022097246 Vha36-1 "Vacuolar H[+] ATPase 0.210 0.264 0.753 1.7e-20
ZFIN|ZDB-GENE-040426-727248 atp6v1d "ATPase, H+ transporti 0.385 0.479 0.468 3.5e-20
UNIPROTKB|E1BT00247 ATP6V1D "Uncharacterized prote 0.375 0.469 0.464 1.9e-19
RGD|735119247 Atp6v1d "ATPase, H+ transporti 0.381 0.477 0.453 2.5e-19
UNIPROTKB|G3V2S6192 ATP6V1D "V-type proton ATPase 0.381 0.614 0.453 4e-19
UNIPROTKB|H0YJH8153 ATP6V1D "V-type proton ATPase 0.381 0.771 0.453 4e-19
UNIPROTKB|Q9Y5K8247 ATP6V1D "V-type proton ATPase 0.381 0.477 0.453 4e-19
UNIPROTKB|F1SA40247 ATP6V1D "Uncharacterized prote 0.381 0.477 0.453 4e-19
MGI|MGI:1921084247 Atp6v1d "ATPase, H+ transporti 0.381 0.477 0.453 5.1e-19
FB|FBgn0040377 Vha36-3 "Vacuolar H[+] ATPase 36kD subunit 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 49/76 (64%), Positives = 64/76 (84%)

Query:   216 LASLETSHKTLNKVIRQTNQRVNALEYVVIPRLARTLDYIKSELDEMEREEFYRLKKIQD 275
             LASL+TS  TL+ VI+ TN+RVNA+E+V+IPR+ RT++YI SELDE+EREEFYRLKKIQD
Sbjct:   148 LASLQTSFVTLDDVIKVTNRRVNAIEHVIIPRINRTIEYIISELDELEREEFYRLKKIQD 207

Query:   276 KKREALERRTREQIER 291
             KKREA +   + + E+
Sbjct:   208 KKREARKASDKLRAEQ 223
GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=NAS
GO:0015992 "proton transport" evidence=NAS
GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA
FB|FBgn0022097 Vha36-1 "Vacuolar H[+] ATPase 36kD subunit 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-727 atp6v1d "ATPase, H+ transporting, V1 subunit D" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BT00 ATP6V1D "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|735119 Atp6v1d "ATPase, H+ transporting, lysosomal V1 subunit D" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2S6 ATP6V1D "V-type proton ATPase subunit D" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YJH8 ATP6V1D "V-type proton ATPase subunit D" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5K8 ATP6V1D "V-type proton ATPase subunit D" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SA40 ATP6V1D "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1921084 Atp6v1d "ATPase, H+ transporting, lysosomal V1 subunit D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
TIGR00860459 TIGR00860, LIC, Cation transporter family protein 7e-27
pfam01813191 pfam01813, ATP-synt_D, ATP synthase subunit D 7e-25
COG1394211 COG1394, NtpD, Archaeal/vacuolar-type H+-ATPase su 2e-20
pfam02932228 pfam02932, Neur_chan_memb, Neurotransmitter-gated 1e-18
TIGR00309209 TIGR00309, V_ATPase_subD, H(+)-transporting ATP sy 3e-18
PRK00373204 PRK00373, PRK00373, V-type ATP synthase subunit D; 5e-18
pfam02931215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 3e-08
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information 
 Score =  109 bits (273), Expect = 7e-27
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 5/120 (4%)

Query: 62  KEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLIL 121
           +   + D + +    EF+LL     +           YP +T+   LRRRP++Y+  L +
Sbjct: 191 QGAVQVDDSLFISLPEFELLGVYGTRYC-TSETNTGEYPCLTFSFVLRRRPLYYLLQLYI 249

Query: 122 PCILINCIALLVFYVPSE-SGEKVTLGISALLSMTVFLMTIRETLPPTEN---ISEYVLV 177
           P ILI  ++ + F++P++ SG +V+LGI+ LL+MT F   +RE+LP       I  Y  V
Sbjct: 250 PSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDVYFAV 309

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459
>gnl|CDD|201987 pfam01813, ATP-synt_D, ATP synthase subunit D Back     alignment and domain information
>gnl|CDD|224312 COG1394, NtpD, Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region Back     alignment and domain information
>gnl|CDD|129409 TIGR00309, V_ATPase_subD, H(+)-transporting ATP synthase, vacuolar type, subunit D Back     alignment and domain information
>gnl|CDD|178991 PRK00373, PRK00373, V-type ATP synthase subunit D; Reviewed Back     alignment and domain information
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 309
KOG3646|consensus486 100.0
KOG3643|consensus459 100.0
TIGR00860459 LIC Cation transporter family protein. selective w 100.0
KOG3645|consensus449 100.0
KOG3644|consensus457 100.0
KOG3642|consensus466 100.0
KOG1647|consensus255 99.81
COG1394211 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [E 99.77
TIGR00309209 V_ATPase_subD H(+)-transporting ATP synthase, vacu 99.76
PRK02195201 V-type ATP synthase subunit D; Provisional 99.74
PF01813196 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR 99.73
PRK00373204 V-type ATP synthase subunit D; Reviewed 99.72
PF02932237 Neur_chan_memb: Neurotransmitter-gated ion-channel 99.72
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 99.68
PF14494256 DUF4436: Domain of unknown function (DUF4436) 93.9
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 81.91
>KOG3646|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.1e-42  Score=319.95  Aligned_cols=196  Identities=32%  Similarity=0.523  Sum_probs=182.0

Q ss_pred             CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCC--CCccceeecC
Q psy12586          1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREE--GDTTNYQVNG   76 (309)
Q Consensus         1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~--~~~~~~~~~~   76 (309)
                      +|||.|.|.+|... ++|.+|.+.||||. .|.++||||    +|          +|..+||+...+.  +|++.|..||
T Consensus       134 ~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSW----TY----------~G~~lDL~~~~~~g~~Dls~yi~NG  199 (486)
T KOG3646|consen  134 YSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSW----TY----------AGILLDLRIDDEDGGIDLSTYIPNG  199 (486)
T ss_pred             ccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeE----EE----------cceeeeeeeccccCCcchhhcccCC
Confidence            58999999999999 99999999999999 999999999    54          6777777654443  6799999999


Q ss_pred             eEEEeeeeEEEEEEeccCCCCCcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHH
Q psy12586         77 EFDLLSYSSVKNVVNYSCCVEPYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTV  156 (309)
Q Consensus        77 eW~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~  156 (309)
                      ||++.+.++.+....|+||+++|++++|++.+||+..||.+|+++||.++.++++.||.+|+|+|||+++++|++|+.++
T Consensus       200 EW~Ll~~pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~  279 (486)
T KOG3646|consen  200 EWDLLGTPAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCF  279 (486)
T ss_pred             ceeeccccccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCcc----ccchhhhhhhHHHHHHHHHhhcccceeeeCCccccccccccccc
Q psy12586        157 FLMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVR  214 (309)
Q Consensus       157 ~l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~  214 (309)
                      |+..+++..|++|.    +|.||..||+++.+| +..|++|+|+|+|++..   +.+.+|.+
T Consensus       280 FL~mvse~~PpTSeaVPllg~fFsc~m~iv~~S-vvfTv~vLn~h~R~p~~---h~m~p~~r  337 (486)
T KOG3646|consen  280 FLTMVSEMTPPTSEAVPLLGAFFSCCMFIVAAS-VVFTVIVLNLHHRTPET---HEMSPWTR  337 (486)
T ss_pred             HHHHHHhhcCCccccccHHHHHHHHHHHHHHhh-heeEEEEEeeeccCccc---cccCHHHH
Confidence            99999999999999    999999999999998 89999999999998876   44444444

>KOG3643|consensus Back     alignment and domain information
>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>KOG1647|consensus Back     alignment and domain information
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion] Back     alignment and domain information
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D Back     alignment and domain information
>PRK02195 V-type ATP synthase subunit D; Provisional Back     alignment and domain information
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK00373 V-type ATP synthase subunit D; Reviewed Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF14494 DUF4436: Domain of unknown function (DUF4436) Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
4aq5_A461 Gating Movement In Acetylcholine Receptor Analysed 7e-14
2bg9_A370 Refined Structure Of The Nicotinic Acetylcholine Re 7e-13
4aq5_C522 Gating Movement In Acetylcholine Receptor Analysed 1e-09
2bg9_C369 Refined Structure Of The Nicotinic Acetylcholine Re 2e-09
1oed_A227 Structure Of Acetylcholine Receptor Pore From Elect 5e-09
3a5c_G223 Inter-Subunit Interaction And Quaternary Rearrangem 3e-07
3vr6_G217 Crystal Structure Of Amp-pnp Bound Enterococcus Hir 1e-06
2bg9_E370 Refined Structure Of The Nicotinic Acetylcholine Re 2e-06
4aq5_E488 Gating Movement In Acetylcholine Receptor Analysed 2e-06
3aon_A217 Crystal Structure Of The Central Axis (Ntpd-Ntpg) I 4e-06
1oed_B250 Structure Of Acetylcholine Receptor Pore From Elect 5e-06
4aq5_B493 Gating Movement In Acetylcholine Receptor Analysed 5e-05
2bg9_B370 Refined Structure Of The Nicotinic Acetylcholine Re 5e-05
1oed_C260 Structure Of Acetylcholine Receptor Pore From Elect 6e-05
1dxz_A33 M2 Transmembrane Segment Of Alpha-Subunit Of Nicoti 2e-04
2ksr_A164 Nmr Structures Of Tm Domain Of The N-Acetylcholine 4e-04
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461 Back     alignment and structure 
Iteration: 1

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Query: 98  PYPDITYYISLRRRPMFYVFXXXXXXXXXXXXXXXVFYVPSESGEKVTLGISALLSMTVF 157
           PY DITY+  ++R P+++V                VFY+P++SGEK+TL IS LLS+TVF
Sbjct: 221 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVF 280
Query: 158 LMTIRETLPPTEN----ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQV 213
           L+ I E +P T +    I +Y+L +   F +  IIV   ++ T +R  +     T+P+ V
Sbjct: 281 LLVIVELIPSTSSAVPLIGKYMLFTMI-FVISSIIVTVVVINTHHRSPSTH---TMPQWV 336
Query: 214 RPL 216
           R +
Sbjct: 337 RKI 339
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370 Back     alignment and structure
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522 Back     alignment and structure
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369 Back     alignment and structure
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227 Back     alignment and structure
>pdb|3A5C|G Chain G, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 223 Back     alignment and structure
>pdb|3VR6|G Chain G, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 217 Back     alignment and structure
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488 Back     alignment and structure
>pdb|3AON|A Chain A, Crystal Structure Of The Central Axis (Ntpd-Ntpg) In The Catalytic Portion Of Enterococcus Hirae V-Type Sodium Atpase Length = 217 Back     alignment and structure
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250 Back     alignment and structure
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|1DXZ|A Chain A, M2 Transmembrane Segment Of Alpha-Subunit Of Nicotinic Acetylcholine Receptor From Torpedo Californica, Nmr, 20 Structures Length = 33 Back     alignment and structure
>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine Receptor B2 Subunit Length = 164 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query309
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 6e-46
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 4e-43
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 8e-42
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 8e-40
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 9e-40
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 2e-39
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 6e-38
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 2e-36
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 1e-35
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 8e-35
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 2e-31
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 6e-30
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 9e-27
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 6e-26
3aon_A217 V-type sodium ATPase subunit D; V-ATPase, coiled-c 2e-23
3a5c_G223 V-type ATP synthase subunit D; V-ATPase, asymmetri 4e-23
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 5e-23
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 7e-23
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 1e-22
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 1e-22
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 1e-22
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 1e-19
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 1e-18
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 5e-17
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 4e-16
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 4e-14
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 6e-14
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
 Score =  160 bits (406), Expect = 6e-46
 Identities = 48/113 (42%), Positives = 79/113 (69%), Gaps = 1/113 (0%)

Query: 57  QLDLLKEREEGDTTNYQVNGEFDLLSYSSVKNVVNYSCCVE-PYPDITYYISLRRRPMFY 115
           ++ +  E +  D + +  +GE+ +  Y   K+ V Y+CC + PY DITY+  ++R P+++
Sbjct: 179 KVSISPESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYF 238

Query: 116 VFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPT 168
           V N+I+PC+L + + +LVFY+P++SGEK+TL IS LLS+TVFL+ I E +P T
Sbjct: 239 VVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPST 291
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164 Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137 Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae} Length = 217 Back     alignment and structure
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G* Length = 223 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228 Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250 Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260 Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260 Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211 Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212 Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203 Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 100.0
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 100.0
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 100.0
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 100.0
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 100.0
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 100.0
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 100.0
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 100.0
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 100.0
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 100.0
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 100.0
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 99.91
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 99.9
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 99.87
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 99.85
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 99.84
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 99.84
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 99.84
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 99.81
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 99.81
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 99.81
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 99.8
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 99.8
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 99.8
3a5c_G223 V-type ATP synthase subunit D; V-ATPase, asymmetri 99.79
3aon_A217 V-type sodium ATPase subunit D; V-ATPase, coiled-c 99.78
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 99.78
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 99.77
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 99.75
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 98.99
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 91.35
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
Probab=100.00  E-value=1.5e-44  Score=348.85  Aligned_cols=200  Identities=33%  Similarity=0.572  Sum_probs=175.5

Q ss_pred             CCCceEEEEcceeE-EeeCCCCCCCCccc-eeeEEeeecCcccccccceeEeecCCcceeEEEecCCCCCccceeecCeE
Q psy12586          1 MNTEHATVDLPIRS-SKKPLPIRKIPSEI-KLSLTSEEWVPTYLRFPNLIIYFPLFLLQLDLLKEREEGDTTNYQVNGEF   78 (309)
Q Consensus         1 ~~dG~V~~~~~~~~-~~C~mdl~~fPfD~-~C~l~~~S~~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~eW   78 (309)
                      ++||+|.|.+|+++ ++|+||+++||||+ +|+++|+||    +|+..++.+.+          ..+.+++++|..++||
T Consensus       135 ~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~----~y~~~~v~l~~----------~~~~~~l~~~~~~~eW  200 (461)
T 4aq5_A          135 DYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIW----TYDGTKVSISP----------ESDRPDLSTFMESGEW  200 (461)
T ss_dssp             CSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEES----SCCTTTEEEEC----------CCCCCSGGGCCTTCSS
T ss_pred             cCCccEEEeccccccccccccccCCCCccCccCeEEecc----ccCCceEEEEe----------ccccccHHhhhccCce
Confidence            48999999999999 99999999999999 999999999    77665555543          3456778889999999


Q ss_pred             EEeeeeEEEEEEeccCCCC-CcceEEEEEEEEeecceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHH
Q psy12586         79 DLLSYSSVKNVVNYSCCVE-PYPDITYYISLRRRPMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVF  157 (309)
Q Consensus        79 ~l~~~~~~~~~~~~~~~~~-~y~~l~~~~~l~R~~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~  157 (309)
                      ++.+.+..++...|.||++ +|++++++|.++|+++||++++++||+++++++|++||+|+++++|+++|+|++|++++|
T Consensus       201 ~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~eRv~LgiT~LLt~tvf  280 (461)
T 4aq5_A          201 VMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVF  280 (461)
T ss_dssp             EEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTHHHHHHHHHHHH
T ss_pred             EEeeeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccccceeehhHHHHHHHHHH
Confidence            9999999888888999988 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCc-c---ccchhhhhhhHHHHHHHHHhhcccceeeeCCccccccccccccccccc
Q psy12586        158 LMTIRETLPPTE-N---ISEYVLVSSDHFRVKYIIVADELLPTRYRGRAQSQEFTLPEQVRPLAS  218 (309)
Q Consensus       158 l~~l~~~lP~~s-~---i~~y~~~~~~~v~~s~ii~~~~v~n~~~r~~~~~~~~~l~~~l~~la~  218 (309)
                      +..+++.+|++| +   ||+|+++||+++++| ++.+++|+|+++|++..   +++|.|++++.-
T Consensus       281 l~~v~~~LP~tS~~vplI~~y~~~~m~~v~~s-ll~tv~Vl~l~~r~~~~---~~mp~w~r~~~l  341 (461)
T 4aq5_A          281 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISS-IIVTVVVINTHHRSPST---HTMPQWVRKIFI  341 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH-HHHHHHHHHHHHCCTTT---C-----------
T ss_pred             HHHHHhhcCcccCCcCHHHHHHHHHHHHHHHH-HHHHhhheeeeccCCCC---CCCCHHHHHHHH
Confidence            999999999998 4   999999999999998 89999999999998765   789999998653
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Back     alignment and structure
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G* Back     alignment and structure
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae} Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 309
d1oedc_260 f.36.1.1 (C:) Acetylcholine receptor protein, delt 2e-23
d1oedb_250 f.36.1.1 (B:) Acetylcholine receptor protein, beta 3e-23
d1oeda_227 f.36.1.1 (A:) Acetylcholine receptor protein, alph 4e-23
d1oede_260 f.36.1.1 (E:) Acetylcholine receptor protein, gamm 2e-21
d1uw6a_208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 1e-13
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 94.5 bits (234), Expect = 2e-23
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTENI 171
           P+FYV N I PC+LI+ +A L FY+P+ESGEK++  IS LL+  VFL+   + LP T   
Sbjct: 1   PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPET--- 57

Query: 172 SEYVLVSSDHFRVKYIIVA 190
           +  V +   +      +V 
Sbjct: 58  ALAVPLIGKYLMFIMSLVT 76
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250 Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227 Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query309
d1oedc_260 Acetylcholine receptor protein, delta chain {Marbl 99.82
d1oede_260 Acetylcholine receptor protein, gamma chain {Marbl 99.81
d1oeda_227 Acetylcholine receptor protein, alpha chain {Marbl 99.8
d1oedb_250 Acetylcholine receptor protein, beta chain {Marble 99.8
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 99.76
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.82  E-value=2.6e-23  Score=184.01  Aligned_cols=103  Identities=36%  Similarity=0.641  Sum_probs=85.6

Q ss_pred             cceEEEeeehhhHHHhhhheeeEEecCCCCceEEEEehhHHHHHHHHHHHhhcCCCCcc----ccchhhhhhhHHHHHHH
Q psy12586        112 PMFYVFNLILPCILINCIALLVFYVPSESGEKVTLGISALLSMTVFLMTIRETLPPTEN----ISEYVLVSSDHFRVKYI  187 (309)
Q Consensus       112 ~~~y~~~~iiP~~li~~ls~i~Fwlp~~~~~Ri~l~it~lLt~~~~l~~l~~~lP~~s~----i~~y~~~~~~~v~~s~i  187 (309)
                      |+||++++++||+++++++|++||+|+|+|||+++|+|++|++++|+..+++.+|++|+    ||+|+++||++++++ +
T Consensus         1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s-~   79 (260)
T d1oedc_           1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV-I   79 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH-H
T ss_pred             CceEEEhHHHHHHHHHHHHHHHeeeCCCCCCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHH-H
Confidence            78999999999999999999999999999999999999999999999999999999985    899999999999998 8


Q ss_pred             HHhhcccceeeeCCccccccccccccccccc
Q psy12586        188 IVADELLPTRYRGRAQSQEFTLPEQVRPLAS  218 (309)
Q Consensus       188 i~~~~v~n~~~r~~~~~~~~~l~~~l~~la~  218 (309)
                      +.+++|+|+++|++..   +++|.|++++.-
T Consensus        80 ~~t~~Vl~~~~~~~~~---~~~p~w~R~~~l  107 (260)
T d1oedc_          80 VNCGIVLNFHFRTPST---HVLSTRVKQIFL  107 (260)
T ss_dssp             HHHHHHHHHHHHC------------------
T ss_pred             HHHHhheeeeeccccc---CccchHHHHHHH
Confidence            9999999999998654   679999997653
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure