Psyllid ID: psy12594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--
Protein Sequence
MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQKSSNLPDCKDSGSGNPSGSAQSLQRSEASTTSTASIY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccccccEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccEEc
Coil and Loop (DISEMBL)
MSRKSVKNSIDHYQRARLCFVQTmsafadkpstihflkdlnvVDLIVPlladkvpsIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDErcagliedkdlDSIIsslhdfdpdtRANAALALGGLAKDNKHFAERIVqcgalpplvqilaspqlsLKHAAAFALDGivkhspelaesasdcdvIPLLIKALnndevnvkADAFLCLADiakdspslasTIADGATTLAVehltyphglvqKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRlidcnggynslPAIMALGYMSAQSEQIAEQIIELQgvgslqtilqcphkEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALnilipkcenpKELEQMLLGNVSEELLASILCAFAkilpcdpvarrsfvtsHCLRkvqeieptpeiaphlktinacfpnevihfvsphYLEDLINRldqfnpqkssnlpdckdsgsgnpsgsaqslqrseasttstasiy
Flexible Loop (DISEMBL)
msrksvknsidHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQeieptpeiapHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQKSSNLPDCKDSGSgnpsgsaqslqrseasttstasiy
Low Complexity Region (SEG)
MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRanaalalgglaKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHnlrlanlvvlaggldgllrlIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQKSSNLPDCKDSGSGNPSGSAQSLQRSEASTTSTASIY
Disordered region (IsUnstruct)
**********DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL************************ALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLD******************************************
Disordered Region (DISOPRED)
******K****HYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQK************************************
Disordered Region (DISEMBL)
**********DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQKSSNL********************************
Disordered Region (DISPRO)
**RKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQKS***********************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQKSSNLPDCKDSGSGNPSGSAQSLQRSEASTTSTASIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	542	2.2.26 [Sep-21-2011]
Q9JLI7	507	Sperm-associated antigen	yes	N/A	0.920	0.984	0.360	6e-80
O75602	509	Sperm-associated antigen	yes	N/A	0.920	0.980	0.356	4e-79
Q59MN0	585	Vacuolar protein 8 OS=Can	N/A	N/A	0.599	0.555	0.266	3e-08
O04294	531	Importin subunit alpha-2	yes	N/A	0.448	0.457	0.223	2e-07
Q6BTZ4	560	Vacuolar protein 8 OS=Deb	yes	N/A	0.601	0.582	0.250	2e-07
Q71VM4	526	Importin subunit alpha-1a	yes	N/A	0.444	0.458	0.268	5e-07
C0LLJ0	499	Importin subunit alpha-8	no	N/A	0.444	0.482	0.247	3e-06
Q6C5Y8	573	Vacuolar protein 8 OS=Yar	no	N/A	0.571	0.541	0.243	6e-06
Q96321	532	Importin subunit alpha-1	no	N/A	0.440	0.449	0.224	1e-05
Q02821	542	Importin subunit alpha OS	yes	N/A	0.415	0.415	0.209	1e-05

>sp|Q9JLI7|SPAG6_MOUSE Sperm-associated antigen 6 OS=Mus musculus GN=Spag6 PE=1 SV=1

 Score =  298 bits (764), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 184/511 (36%), Positives = 285/511 (55%), Gaps = 12/511 (2%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           MS++ V    + YQ+AR  FVQ ++  A +P  I  L++  V+ L+ PLL D VP+IQ  
Sbjct: 1   MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMSLLRPLLLDVVPTIQQT 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   LG+L    + D+ + V++ +++  ++  L +QN+ YKK A  +L  V +   + A 
Sbjct: 61  AALALGRL-ANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQ 119

Query: 121 LIED-KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
            I D   LD+++  L DFDP  +  AA ALG +A+ N   ++ +V  GA+P LV  +  P
Sbjct: 120 AIVDCGALDTLVICLEDFDPGVKEAAAWALGYIARHNTELSQAVVDAGAIPLLVLCIQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +++LK  AA AL  I KHSPELA++  D   I  L + + N +  +K      L+ IAK 
Sbjct: 180 EIALKRIAASALSDISKHSPELAQTVVDAGAIAHLAQMILNPDAKLKRQVLSALSQIAKH 239

Query: 240 SPSLASTIADGAT-TLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA  + +     + +  L      V+KNA TL+R++ KH   L+ L+V AGG+  + 
Sbjct: 240 SVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNACTLIREIAKHTPELSQLIVNAGGVAAV- 298

Query: 299 RLIDCNG---GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355
             IDC G   G   LP IM LGY++A SE +A  +I  +GV  L   L    ++ ++ AA
Sbjct: 299 --IDCIGSCKGNIRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSICLSEEPEDHIKAAA 356

Query: 356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKE 415
           AW LGQ+G+H+ ++  A+   N L  LLS       S++L+ K K A+  ++ KC     
Sbjct: 357 AWALGQLGRHTPEHARAVAVTNTLPVLLSLYMSPESSEDLQLKSKKAIKNILQKCTYLPA 416

Query: 416 LEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLK 473
           LE  L  +    +L  ++  F+K+LP D  ARR FVTS  L+KVQEI  EP   +  ++ 
Sbjct: 417 LEPFLY-DAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYIN 475

Query: 474 TINACFPNEVIHFVSPHYLEDLINRLDQFNP 504
           +IN C+P E++ + SP Y + L+ R+D + P
Sbjct: 476 SINNCYPEEIVRYYSPGYSDTLLQRVDSYQP 506

Important for structural integrity of the central apparatus in the sperm tail and for flagellar motility.
Mus musculus (taxid: 10090)

>sp|O75602|SPAG6_HUMAN Sperm-associated antigen 6 OS=Homo sapiens GN=SPAG6 PE=2 SV=1

 Score =  295 bits (756), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 182/511 (35%), Positives = 286/511 (55%), Gaps = 12/511 (2%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           MS++ V    + YQ+AR  FVQ ++  A +P  I  L++  V+ L+  LL D VP+IQ  
Sbjct: 1   MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMSLLRTLLLDVVPTIQQT 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   LG+L    + D+ + V++ +++  ++  L +QN+ YKK A  +L  V +   + A 
Sbjct: 61  AALALGRL-ANYNDDLAEAVVKCDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQ 119

Query: 121 LIED-KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
            I D   LD+++  L DFDP  +  AA AL  +A+ N   ++ +V  GA+P LV  +  P
Sbjct: 120 AIVDCGALDTLVICLEDFDPGVKEAAAWALRYIARHNAELSQAVVDAGAVPLLVLCIQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +++LK  AA AL  I KHSPELA++  D   +  L + + N +  +K      L+ ++K 
Sbjct: 180 EIALKRIAASALSDIAKHSPELAQTVVDAGAVAHLAQMILNPDAKLKHQILSALSQVSKH 239

Query: 240 SPSLASTIADGAT-TLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA  + +     + +  L      V+KNA+TL+R++ KH   L+ LVV AGG+  + 
Sbjct: 240 SVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLVVNAGGVAAV- 298

Query: 299 RLIDCNG---GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355
             IDC G   G   LP IM LGY++A SE +A  +I  +GV  L   L    ++ ++ AA
Sbjct: 299 --IDCIGSCKGNTRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSVCLSEEPEDHIKAAA 356

Query: 356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKE 415
           AW LGQIG+H+ ++  A+   N L  LLS    T  S++L+ K K A+  ++ KC     
Sbjct: 357 AWALGQIGRHTPEHARAVAVTNTLPVLLSLYMSTESSEDLQVKSKKAIKNILQKCTYLPA 416

Query: 416 LEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLK 473
           LE  L  +    +L  ++  F+K+LP D  ARR FVTS  L+KVQEI  EP   +  ++ 
Sbjct: 417 LEPFLY-DAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYIN 475

Query: 474 TINACFPNEVIHFVSPHYLEDLINRLDQFNP 504
           +IN+C+P E++ + SP Y + L+ R+D + P
Sbjct: 476 SINSCYPEEIVRYYSPGYSDTLLQRVDSYQP 506

Important for structural integrity of the central apparatus in the sperm tail and for flagellar motility.

Homo sapiens (taxid: 9606)

>sp|Q59MN0|VAC8_CANAL Vacuolar protein 8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VAC8 PE=3 SV=3

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 31/356 (8%)

Query: 75  DIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL 134
           D+R+  + R+++  +L  L   +   ++ A   L  +A   E    ++E   L+ +I  +
Sbjct: 80  DVRE--VNRDVLEPILILLQSADSEVQRAACGALGNLAVNTENKILIVEMGGLEPLIRQM 137

Query: 135 HDFDPDTRANAALALGGLAK--DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD 192
              + + + NA   +  LA   DNK    +I + GAL PL ++  S  + ++  A  AL 
Sbjct: 138 MSTNIEVQCNAVGCITNLATQDDNK---SKIAKSGALIPLTKLAKSKDIRVQRNATGALL 194

Query: 193 GIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS---PSLASTIAD 249
            +  HS E  +   +   +P+L+  L+N++ +V+      L++IA D      LAST   
Sbjct: 195 NMT-HSGENRQELVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPK 253

Query: 250 GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNS 309
               L V  +  P   VQ  A   LR++   +      +V AGGL  L++L+ CN     
Sbjct: 254 LVGQL-VHLMDSPSPRVQCQATLALRNLASDSGYQVE-IVRAGGLPHLVQLLTCNHQPLV 311

Query: 310 LPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN 369
           L A+  +  +S      A  IIE   +  L  +L     E++Q  A  TL  +   S  N
Sbjct: 312 LAAVACIRNISIHPLNEA-LIIEAGFLKPLVGLLDYTDSEEIQCHAVSTLRNLAASSEKN 370

Query: 370 VTAL--------CEENVLS---TLLSKITQ----TCVSDNLKSKCKNA--LNILIP 408
            TAL        C+E VL    T+ S+I+       ++D+LK K   +  +++LIP
Sbjct: 371 RTALLAAGAVDKCKELVLKVPLTVQSEISACFAILALADDLKPKLYESHIIDVLIP 426

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Vacuole inheritance has a role in the regulation of hyphal cell division.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 16/259 (6%)

Query: 133 SLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD 192
           S  DF P  +  AA AL  +A         I++ GA+P  +Q+L+S    ++  A +AL 
Sbjct: 128 SRDDF-PKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALG 186

Query: 193 GIVKHSPELAESA-SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA 251
            +   SP+  +   S   + PLL +   N ++++  +A   L++  +  P  A      A
Sbjct: 187 NVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPA 246

Query: 252 TTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLAN-------LVVLAGGLDGLLRLIDCN 304
                  L     LVQ     +L D C     L++        V+ AG +  L++L+  +
Sbjct: 247 -------LPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHS 299

Query: 305 GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK 364
                +PA+  +G +    +   + +++ Q +  L  +L+  +K+ ++  A WT+  I  
Sbjct: 300 SPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITA 359

Query: 365 HSVDNVTALCEENVLSTLL 383
            + D + A+ +  ++ +L+
Sbjct: 360 GNADQIQAVIDAGIIQSLV 378

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6BTZ4|VAC8_DEBHA Vacuolar protein 8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=VAC8 PE=3 SV=4

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 159/355 (44%), Gaps = 29/355 (8%)

Query: 75  DIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL 134
           D+R+  + R+++  +L  L   +   ++ A   L  +A  +E    ++E   L+ +I  +
Sbjct: 80  DVRE--VNRDVLEPILILLQSADSEVQRAACGALGNLAVNNENKILIVEMGGLEPLIRQM 137

Query: 135 HDFDPDTRANAALALGGLAK--DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD 192
              + + + NA   +  LA   DNK    +I + GAL PL ++  S  + ++  A  AL 
Sbjct: 138 MSTNIEVQCNAVGCITNLATQDDNK---TKIAKSGALIPLAKLAKSKDIRVQRNATGALL 194

Query: 193 GIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA--STIADG 250
            +  HS E  +   +   +P+L+  L+N++ +V+      L++IA D  +    ST    
Sbjct: 195 NMT-HSGENRQELVNAGAVPVLVSLLSNEDADVQYYCTTALSNIAVDEMNRKKLSTTEPK 253

Query: 251 ATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL 310
             +  V  +  P   VQ  A   LR++   +      +V AGGL  L++L+ CN     L
Sbjct: 254 LVSQLVNLMDSPSPRVQCQATLALRNLASDSGYQVE-IVRAGGLPHLVQLLTCNHQPLVL 312

Query: 311 PAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNV 370
            A+  +  +S      A  II+   +  L  +L     E++Q  A  TL  +   S  N 
Sbjct: 313 AAVACIRNISIHPLNEA-LIIDAGFLKPLVGLLDFNDSEEIQCHAVSTLRNLAASSERNR 371

Query: 371 TAL--------CEENVLSTLLSKITQT-------CVSDNLKSKCKNA--LNILIP 408
            AL        C+E VL   LS  ++         ++D+LK K   +  +++LIP
Sbjct: 372 LALLAAGAVDKCKELVLKVPLSVQSEISACFAILALADDLKPKLYESHIIDVLIP 426

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 101/250 (40%), Gaps = 9/250 (3%)

Query: 161 ERIVQCGALPPLVQILAS---PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217
           E ++Q G +P  VQ L     PQL  +  AA+AL  I   + E  +   D   +P+ +K 
Sbjct: 109 EEVIQSGVVPRFVQFLTREDFPQLQFE--AAWALTNIASGTSENTKVVIDHGAVPIFVKL 166

Query: 218 LNNDEVNVKADAFLCLADIAKDSPSLAS-TIADGATTLAVEHLTYPHGL-VQKNAATLLR 275
           L +   +V+  A   L ++A DSP      +A+GA    +  L     L + +NA   L 
Sbjct: 167 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 226

Query: 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG 335
           + C+   +  +       L  L RLI  N       A  AL Y+S  +    + +IE   
Sbjct: 227 NFCRGKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 285

Query: 336 VGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNL 395
              L  +L  P    L + A  T+G I          + +   L  LLS +TQ       
Sbjct: 286 CPRLVELLLHPSPSVL-IPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIK 344

Query: 396 KSKCKNALNI 405
           K  C    NI
Sbjct: 345 KEACWTISNI 354

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|C0LLJ0|IMA8_MOUSE Importin subunit alpha-8 OS=Mus musculus GN=Kpna7 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 22/263 (8%)

Query: 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178
           AGLI  K +D + ++ H   P  +  AA  L  +A         +V+ GA+ PL+++L S
Sbjct: 110 AGLIP-KLVDFLKATPH---PKLQFEAAWVLTNIASGTSEQTRAVVKEGAIQPLIELLCS 165

Query: 179 PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238
           P L++   A +AL  I     E  +     + IP LI  ++      K      L +I+ 
Sbjct: 166 PHLTVSEQAVWALGNIAGDCAEFRDCVISNNAIPHLINLIS------KGIPITFLRNISW 219

Query: 239 DSPSLASTIADGATTLAVEHLTYPH-GLVQKNAATLLRDMC-------KHNLRLANLVVL 290
              +L        +  AV  +  P   L+      +L D C       K      + VV 
Sbjct: 220 TLSNLCRNKDPYPSESAVRQMLPPLCQLLLHRDNEILADTCWALSYLTKGGKEYIHHVVT 279

Query: 291 AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQ 350
            G L  L+ L+  +    S+P +  +G + A +++  +  I+   +  L  +L+ P K  
Sbjct: 280 TGILPRLVELMTSSELSISIPCLHTIGNIVAGTDEQTQMAIDAGMLKVLGQVLKHP-KTS 338

Query: 351 LQVAAAWTLGQIG---KHSVDNV 370
           +QV AAWT+  +    +H V+ +
Sbjct: 339 IQVLAAWTMSNVAAGPRHQVEQL 361

Functions in nuclear protein import.

Mus musculus (taxid: 10090)

>sp|Q6C5Y8|VAC8_YARLI Vacuolar protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VAC8 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 27/337 (8%)

Query: 82  ERNLVALVLKDLTKQNK--HYKKTALHMLTCVAQQD----ERCAGL----IEDKD----- 126
           ER  VAL+L+ L  + +   +    L  L+ +   D    +R A L    I +KD     
Sbjct: 47  EREAVALLLRYLENRGEVDFFSNGPLRALSTLVYSDNIDLQRSAALAFAEITEKDIRPVN 106

Query: 127 ---LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSL 183
              L+ ++  L + DPD +  A+ ALG LA +N++    IV+ G   PL++ + SP + +
Sbjct: 107 RDCLEPVLLLLQNTDPDIQRAASAALGNLAVNNENKV-LIVEMGGFEPLIRQMMSPNVEV 165

Query: 184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL 243
           +  A   +  +  H    ++ A    ++P L K   + ++ V+ +A   L ++     + 
Sbjct: 166 QCNAVGCITNLATHEANKSKIARSGALLP-LTKLAKSKDMRVQRNATGALLNMTHSDQNR 224

Query: 244 ASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGL-DGLLRLID 302
              +  GA  + V  L+     VQ  + T L ++         L      L + L++L+D
Sbjct: 225 QELVNAGAIPILVSLLSSRDPDVQYYSTTALSNIAVDESNRKKLSSSEPRLVEHLIKLMD 284

Query: 303 CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI 362
                    A +AL  +++ S+   E I++  G+  L  + Q  H   L +AA   +  I
Sbjct: 285 SGSPRVQCQAALALRNLASDSDYQLE-IVKANGLPHLFNLFQSTHTP-LVLAAVACIRNI 342

Query: 363 GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKC 399
             H + N T + E   L TL+  +     SDN + +C
Sbjct: 343 SIHPL-NETPIIEAGFLKTLVELLG---ASDNEEIQC 375

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 15/254 (5%)

Query: 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198
           P  +  AA AL  +A       + ++   A+P  VQ+LASP   ++  A +AL  +   S
Sbjct: 130 PAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVAGDS 189

Query: 199 PELAESASDCD-VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVE 257
           P   +    C  ++PLL +   + ++++  +A   L++  +  P         A   A+E
Sbjct: 190 PRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALP-ALE 248

Query: 258 HLTYPHGLVQKNAATLLRDMCKHNLRLAN-------LVVLAGGLDGLLRLIDCNGGYNSL 310
                  L+  +   +L D C     L++        V+ AG +  L+ L+  +     +
Sbjct: 249 R------LIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLI 302

Query: 311 PAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNV 370
           PA+  +G +    +   + +I    +  L  +L   HK+ ++  A WT+  I   + D +
Sbjct: 303 PALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQI 362

Query: 371 TALCEENVLSTLLS 384
             + E N++S L+S
Sbjct: 363 QTVVEANLISPLVS 376

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q02821|IMA1_YEAST Importin subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/282 (20%), Positives = 112/282 (39%), Gaps = 57/282 (20%)

Query: 152 LAKDNKHFAERIVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDV 210
           L+++++   + ++Q G +P LV+ +   Q   L+  AA+AL  I   +    +   D D 
Sbjct: 115 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 174

Query: 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNA 270
           +PL I+ L    V VK  A   L ++A DS      +      L    +    GL   N 
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV------LQCNAMEPILGLFNSNK 228

Query: 271 ATLLR-------DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS 323
            +L+R       ++C+      +  V++  L  L +LI        + A  A+ Y+S   
Sbjct: 229 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288

Query: 324 EQIAEQIIE----------------------LQGVGSLQT-------------------- 341
           ++  + +I+                      L+ VG++ T                    
Sbjct: 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348

Query: 342 ILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
           +L  P KE ++  A WT+  I   + + + A+ + N++  L+
Sbjct: 349 LLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
350420772	535	PREDICTED: sperm-associated antigen 6-li	0.928	0.940	0.404	2e-93
328786124	535	PREDICTED: sperm-associated antigen 6-li	0.928	0.940	0.398	3e-92
307184404	644	Sperm-associated antigen 6 [Camponotus f	0.909	0.765	0.389	5e-89
340724052	495	PREDICTED: sperm-associated antigen 6-li	0.902	0.987	0.404	7e-88
380021974	489	PREDICTED: sperm-associated antigen 6-li	0.894	0.991	0.399	2e-87
383854770	534	PREDICTED: sperm-associated antigen 6-li	0.933	0.947	0.375	4e-86
405950834	508	Sperm-associated antigen 6 [Crassostrea	0.929	0.992	0.378	8e-86
146085436	510	putative axoneme central apparatus prote	0.931	0.990	0.366	1e-85
157868683	510	putative axoneme central apparatus prote	0.931	0.990	0.364	2e-85
389603936	653	putative axoneme central apparatus prote	0.931	0.773	0.360	5e-85

>gi|350420772|ref|XP_003492620.1| PREDICTED: sperm-associated antigen 6-like [Bombus impatiens]

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 206/509 (40%), Positives = 297/509 (58%), Gaps = 6/509 (1%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           M+ +S+    D YQ+ARL FVQ+++ FA KP+TI  L+   V+DL+ PLL D VPSIQH 
Sbjct: 1   MTARSILQVFDQYQKARLFFVQSIADFASKPNTIDCLEAAGVLDLLCPLLTDPVPSIQHT 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   LGKL     + + Q V+   ++  +LK++ KQNK YKK AL +L  +A+     A 
Sbjct: 61  AAVALGKL-ANNSMKLAQAVVRMGILPQLLKNIDKQNKFYKKAALFVLRAIARHSPELAS 119

Query: 121 L-IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
           + I++  LD+II  L DFD   +   A ALG +A+ NK  A+ IV  GA+P LV  L  P
Sbjct: 120 MVIQNNGLDTIIICLEDFDSGVKEATAWALGYIARHNKTLAQAIVDAGAVPLLVLALQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +L LK  +A AL  I KH+ +LAE+  D   IP L KAL+N +  +K    L L+ IAK 
Sbjct: 180 ELCLKQISASALFDISKHNIDLAETVVDAGAIPFLAKALSNPDTKLKRQVLLALSSIAKH 239

Query: 240 SPSLASTIADGATTLAV-EHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA +I +      V  H+ +P   V K AA L R++CKH L LA L+V  GG+  L+
Sbjct: 240 SVHLAESIIEAEVFPDVLVHMAHPDECVVKAAAMLTREICKHTLELAQLIVNIGGIGALV 299

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
            LI  +     LPAIMA+GY++   +Q+A  +I  +G+  L TIL   + +       W 
Sbjct: 300 ELISTSKLTVRLPAIMAIGYIAGHLDQLAIAVIGSKGIVHLSTILYEENDDHTLAVTVWA 359

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           +GQIGKH+ ++  A+   N+L  LL        S++LK+KC  AL  ++ KC   + LE 
Sbjct: 360 IGQIGKHTSEHAKAVAVANILPKLLQLYNNPNSSEDLKAKCNTALKQILQKCMYIEALES 419

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAPHLKTIN 476
            LL +    +L  +L  F+KILP DP ARR FVTS  L+KVQEI+  P   +  +++ IN
Sbjct: 420 -LLHDSPPNILKYVLGQFSKILPHDPRARRLFVTSGGLKKVQEIQADPGSTLLEYIQIIN 478

Query: 477 ACFPNEVIHFVSPHYLEDLINRLDQFNPQ 505
            CFP+E++ + SP Y   L+  ++Q+ P+
Sbjct: 479 CCFPDEIVRYYSPGYPNSLLEAVEQYQPK 507

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786124|ref|XP_394968.3| PREDICTED: sperm-associated antigen 6-like isoform 1 [Apis mellifera]

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 203/509 (39%), Positives = 294/509 (57%), Gaps = 6/509 (1%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           M+ +S+    D YQ+ARL FVQ+++ FA KP+TI  L+   V+DL+ PLL D VPSIQH 
Sbjct: 1   MTARSILQVFDQYQKARLLFVQSIADFASKPNTIECLEAAGVLDLLCPLLTDLVPSIQHM 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   LGK+    +  + Q ++  +++  +LK++ KQNK YKK AL +L  +A+     A 
Sbjct: 61  AAVALGKI-ANNNKKLAQTIVRMDILPQLLKNIAKQNKFYKKAALFVLRAIARHSAEFAS 119

Query: 121 L-IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
           + I+   LD+II  L DFD   +  AA ALG +A+ NK+ A+  V  GA+P LV  L  P
Sbjct: 120 MVIQSNGLDTIIICLEDFDSGVKEAAAWALGYIARHNKNLAQTTVDAGAVPLLVLSLQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +L +K   A  L  I KHS ELAE+  D   IP L KAL+N +  +K    L L+ IAK 
Sbjct: 180 ELCIKQITASVLFDISKHSTELAENVVDAGAIPFLAKALSNPDTKLKRQVLLALSSIAKH 239

Query: 240 SPSLASTIADGATTLAV-EHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA +I +      V  H+ +P   V K AA L R++CKH L +A L+V  GG+  L+
Sbjct: 240 SAHLAESIIEAEIFPDVLVHMAHPDECVVKAAAMLTREICKHTLEMAQLIVNIGGIGALV 299

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
            L   +     LPAIMA+GY++  S+Q+A  +I  +G+  L TIL   + +       W 
Sbjct: 300 ELFSTSKLTVRLPAIMAIGYIAGHSDQLAIAVIGSKGIVHLSTILHEENDDHTLAVTVWA 359

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           +GQIGKH+ ++  A+   N+L  LL        S++LK+KC  AL  ++ KC   + LE 
Sbjct: 360 IGQIGKHTSEHAKAVAVANILPKLLELYNNPNSSEDLKAKCNTALKQILQKCMYIEALEA 419

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAPHLKTIN 476
            LL +    +L  +L  F+KILP D  ARR FVTS  L+KVQEI+  P   +  +++ IN
Sbjct: 420 -LLYDSPPNILKYVLGQFSKILPHDARARRLFVTSGGLKKVQEIQTDPGSTLFEYVQIIN 478

Query: 477 ACFPNEVIHFVSPHYLEDLINRLDQFNPQ 505
            CFP E+I + SP Y   L+  ++Q+ P+
Sbjct: 479 CCFPEEIIRYYSPGYPNTLLEAVEQYQPK 507

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184404|gb|EFN70813.1| Sperm-associated antigen 6 [Camponotus floridanus]

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 195/501 (38%), Positives = 289/501 (57%), Gaps = 8/501 (1%)

Query: 10  IDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLM 69
            D YQ+ARL FVQ+++  + KP+ I  L+   V+DL+ PLL D VPSIQH A    GKL 
Sbjct: 120 FDQYQKARLLFVQSIADLSSKPNNIDCLEAAGVIDLLRPLLMDTVPSIQHMAAFAFGKL- 178

Query: 70  CAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-L 127
            A H   +   ++ R++++ +LK++ KQNK YKK AL +L  +A+     A ++ D D L
Sbjct: 179 -ANHNSRLAHAIVRRDILSHLLKNIDKQNKFYKKAALFVLRAIAKHSPELALIVVDHDGL 237

Query: 128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAA 187
           ++II  L DFDP+ +  AA ALG +A+ NK  A+  V  GA   LV  L  P+L +K   
Sbjct: 238 ETIIECLEDFDPEVKEAAAWALGYIARHNKSLAQTAVDAGAASLLVLCLQEPELYIKQIG 297

Query: 188 AFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI 247
           A A+  I KHS ELA++  D   +  L K L N +   K  A L L+ IAK S  LA  +
Sbjct: 298 ASAISDISKHSIELAQAVVDTGAVAFLAKTLANPDAKAKRQALLALSSIAKHSTELAEAV 357

Query: 248 ADGATTLAV-EHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG 306
            +      V  H+ +P   V + AA L R++CKH L LA L    GG+  L+ LI+ +  
Sbjct: 358 IEAEIFPDVLVHMAHPDENVGRVAAILTREICKHTLELAQLATNIGGIAALIELINVSKS 417

Query: 307 YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS 366
              LPAIMALGY++  S+Q+A  +I  +G+  L  +LQ   ++ +     W +GQIGKH+
Sbjct: 418 ATRLPAIMALGYIAGHSDQLAVAVIGSKGIVQLTIVLQEETEDHILAVTVWAIGQIGKHT 477

Query: 367 VDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSE 426
            ++  A+   N+L  LL   + +  S++L++KC   L  ++ KC   + LE  LL +V  
Sbjct: 478 PEHAKAIAAANILPKLLKLYSDSKSSEDLRAKCNTTLKQVLQKCMYIEALEP-LLHDVPL 536

Query: 427 ELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTINACFPNEVI 484
            +L  +L  F+KILP D  ARR FVTS  L+KVQEI  EP   ++ ++  IN CFP E++
Sbjct: 537 NILKYVLGQFSKILPHDAKARRLFVTSGGLKKVQEIQAEPGTALSEYITIINCCFPEEIV 596

Query: 485 HFVSPHYLEDLINRLDQFNPQ 505
            + SP Y + L+  ++Q+ P+
Sbjct: 597 RYYSPGYPDSLLEAVEQYQPK 617

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724052|ref|XP_003400399.1| PREDICTED: sperm-associated antigen 6-like [Bombus terrestris]

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 201/497 (40%), Positives = 287/497 (57%), Gaps = 8/497 (1%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           M+ +S+    D YQ+ARL FVQ+++ FA KP+TI  L+   V+DL+ PLL D VPSIQH 
Sbjct: 1   MTARSILQVFDQYQKARLFFVQSIADFASKPNTIDCLEAAGVLDLLCPLLTDPVPSIQHT 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   LGKL     + + Q V+   ++  +LK++ KQNK YKK AL +L  +A+     A 
Sbjct: 61  AAVALGKL-ANNSIKLAQAVVRMGILPQLLKNIDKQNKFYKKAALFVLRAIARHSPELAS 119

Query: 121 L-IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
           + I+   LD+II  L DFD   +   A ALG +A+ NK  A+ IV  GA+P LV  L  P
Sbjct: 120 MVIQSNGLDTIIICLEDFDSGVKEATAWALGYIARHNKTLAQAIVDAGAVPLLVLALQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +L LK  +A AL  I KH+ +LAE+  D   IP L KAL+N +  +K    L L+ IAK 
Sbjct: 180 ELCLKQISASALFDISKHNIDLAETVVDAGAIPFLAKALSNPDTKLKRQVLLALSSIAKH 239

Query: 240 SPSLASTIADGATTLAV-EHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA +I +      V  H+ +P   V K AA L R++CKH L LA L+V  GG+  L+
Sbjct: 240 SVHLAESIIEAEIFPDVLVHMAHPDECVVKAAAMLTREICKHTLELAQLIVNIGGIGALV 299

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
            LI  +     LPAIMA+GY++   +Q+A  +I  +G+  L TIL   + +       W 
Sbjct: 300 ELISTSKLTVRLPAIMAIGYIAGHLDQLAIAVIGSKGIVHLSTILYEENDDHTLAVTVWA 359

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           +GQIGKH+ ++  A+   N+L  LL        S++LK+KC  AL  ++ KC   + LE 
Sbjct: 360 IGQIGKHTSEHAKAVAVANILPKLLQLYNNPNSSEDLKAKCNTALKQILQKCMYIEALES 419

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEP--TPEIAPHLKTIN 476
            LL +    +L  +L  F+KILP DP ARR FVTS  L+KVQEI+      +  +++ IN
Sbjct: 420 -LLHDSPPNILKYVLGQFSKILPHDPRARRLFVTSGGLKKVQEIQADLGSTLLEYIQIIN 478

Query: 477 ACFPNEVIH--FVSPHY 491
            CFP+E++   F+S  +
Sbjct: 479 CCFPDEIVRLCFISYRF 495

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021974|ref|XP_003694830.1| PREDICTED: sperm-associated antigen 6-like [Apis florea]

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/491 (39%), Positives = 284/491 (57%), Gaps = 6/491 (1%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           M+ +S+    D YQ+ARL FVQ+++ FA KP+TI  L+   V+DL+ PLL D VPSIQH 
Sbjct: 1   MTARSILQVFDQYQKARLLFVQSIADFASKPNTIECLEAAGVLDLLCPLLTDLVPSIQHM 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   LGK+    H  + Q ++  +++  +LK++ KQNK YKK AL +L  +A+     A 
Sbjct: 61  AAVALGKIANNNH-KLAQTIVRMDILPQLLKNIAKQNKFYKKAALFVLRAIARHSSEFAS 119

Query: 121 L-IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
           + I++  L++II  L DFD   +  AA ALG +A+ NK+ A+  V  GA+P LV  L  P
Sbjct: 120 MVIQNNGLETIIICLEDFDSGVKEAAAWALGYIARHNKNLAQTTVDAGAVPLLVLSLQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +L +K   A  L  I KHS +LAE+  D   IP L KAL+N +  +K    L L+ IAK 
Sbjct: 180 ELCIKQITASVLFDISKHSTDLAENVVDAGAIPFLAKALSNPDTKLKRQVLLALSSIAKH 239

Query: 240 SPSLASTIADGATTLAV-EHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA +I +      V  H+ +P   V K AA L R++CKH L +A L+V  GG+  L+
Sbjct: 240 SAHLAESIIEAEIFPDVLVHMAHPDECVVKAAAMLTREICKHTLEMAQLIVNIGGIGALV 299

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
            L   +     LPAIMA+GY++  S+Q+A  +I  +G+  L TIL   + +       W 
Sbjct: 300 ELFSTSKLTVRLPAIMAIGYIAGHSDQLAIAVIGSKGIVHLSTILHEENDDHTLAVTVWA 359

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           +GQIGKH+ ++  A+   N+L  LL        S++LK+KC  AL  ++ KC   + LE 
Sbjct: 360 IGQIGKHTSEHAKAVAAANILPKLLELHNNPNSSEDLKAKCNIALKQILQKCMYIEALEA 419

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAPHLKTIN 476
            LL +    +L  +L  F+KILP D  ARR FVTS  L+KVQEI+  P   +  +++ IN
Sbjct: 420 -LLYDAPPNILKYVLGQFSKILPHDARARRLFVTSGGLKKVQEIQTDPGSTLFEYIQIIN 478

Query: 477 ACFPNEVIHFV 487
            CFP E+I  +
Sbjct: 479 CCFPEEIISLI 489

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854770|ref|XP_003702893.1| PREDICTED: sperm-associated antigen 6-like [Megachile rotundata]

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 192/512 (37%), Positives = 289/512 (56%), Gaps = 6/512 (1%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           M+ + +    D YQ+ARL FVQ+++ FA KP+ +  L+    +DL+ PLL D VPSIQH 
Sbjct: 1   MAARLIIQVFDRYQKARLSFVQSVADFASKPNNVQCLEAAGALDLLCPLLTDHVPSIQHM 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   LGKL    H  + Q ++ ++++  +LK++ KQNK YKK AL ++  VA+     A 
Sbjct: 61  AAVALGKLANNSH-RLAQAIIRKDILPQLLKNIDKQNKFYKKAALFVVRSVAKHSPELAS 119

Query: 121 L-IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
           + I++  L+ II  L DFD   +  AA  +G +A+ NK+  E +V  GA+P LV  L  P
Sbjct: 120 IVIQNNALEVIILCLEDFDSGVKEAAAWTVGYIARHNKNLTEAVVDAGAVPLLVLCLQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +L LK  +A AL  I KH+ +LAE+  D   IP L+KAL+N +  +K      L+ IAK 
Sbjct: 180 ELYLKQISASALFDISKHNSDLAETVVDAGAIPFLVKALSNPDNKLKHQVLSALSSIAKH 239

Query: 240 SPSLASTIADGATTLAV-EHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA ++ +      +  H+ +P   V   A  L R++CKH L +A L+V  GG+  L+
Sbjct: 240 SVQLAESVIEAEILPDILVHMAHPDECVVNAAVMLTREICKHTLEMAQLIVNNGGIGALV 299

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
            LI  +     L A+MA+GY++  S+Q+A  +I  Q +  L TIL       L     W 
Sbjct: 300 ELIAASKLTARLSAVMAIGYIAGHSDQLAVAVIGSQAIVHLSTILHNEDDNHLLAVTTWA 359

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           +GQIGKH+ ++  A+   NV   LL         ++LK+KC   L  ++ +C   + LE 
Sbjct: 360 IGQIGKHTSEHAKAVAIANVFPKLLQLYNDPNSPEDLKAKCNTTLKQVLQRCMYIESLEP 419

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTIN 476
            LL +    +L  IL  F+KILP D  ARR FVTS  L+KVQEI  EP   +  +++ IN
Sbjct: 420 -LLEDAPPNILKCILGQFSKILPHDARARRLFVTSGGLKKVQEIQAEPGSMLLEYIQIIN 478

Query: 477 ACFPNEVIHFVSPHYLEDLINRLDQFNPQKSS 508
            CFP E++ + SP Y + L+  ++Q+ P+ +S
Sbjct: 479 CCFPEEIVRYYSPGYPDSLLEAVEQYQPRCAS 510

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405950834|gb|EKC18795.1| Sperm-associated antigen 6 [Crassostrea gigas]

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 193/510 (37%), Positives = 296/510 (58%), Gaps = 6/510 (1%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           MS++ V    + YQ+AR  FVQT++  A +P  I  L++  V+ L+ PLL D VP+IQ  
Sbjct: 1   MSQRQVLQVFEQYQKARTGFVQTVAELASRPQNIETLQNAGVMSLLRPLLLDIVPTIQQT 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   LG+L    + D+ + V++ +++  ++  L +QN+ YKK A  +L  VA+   + A 
Sbjct: 61  AALALGRL-ANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVAKHSPQLAQ 119

Query: 121 LIED-KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
            + D   LD+++  L +FDP  + +AA ALG +A+ N   A+ +V  GA+P LV  +  P
Sbjct: 120 SVVDCGALDALVICLEEFDPGVKESAAWALGYIARHNAELAQAVVDAGAVPLLVLCIQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +LSLK  AA AL  I KHSPELA++  D   I  L + + N +  +K   F  L+ I+K 
Sbjct: 180 ELSLKRIAASALSDICKHSPELAQTVVDAGAIAHLAQMILNPDAKLKRQVFSALSQISKH 239

Query: 240 SPSLASTIADGATTLAVEH-LTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA  + +     AV   L  P   V+KN ATL+R++ KH   LA L+V AGG+  ++
Sbjct: 240 SVDLAEMVVEAEIFPAVLTCLKDPDEYVKKNVATLIREIAKHTPELAQLIVNAGGVAAVV 299

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
             +  + G   LP IM LGY++A SE +A  +I  +GV  L   L    ++ +Q AAAW 
Sbjct: 300 DYVGESKGNIRLPGIMMLGYVAAHSENLAMAVIVSKGVVQLAIALSEEPEDHIQAAAAWA 359

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           LGQIG+H+ ++  A+   NVL  LL    +   S++L++K K AL  ++ KC +   LE 
Sbjct: 360 LGQIGRHTPEHAKAVAVANVLPKLLQCYLRADASEDLQTKSKKALKNILQKCVHLPALEP 419

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTIN 476
            LL +    +L  ++  F+K+LP D  ARR FVTS  L+K+QEI  EP   +A ++ TIN
Sbjct: 420 -LLHDAPPNILKHVVGQFSKVLPHDSKARRLFVTSAGLKKIQEIKAEPGSALAEYINTIN 478

Query: 477 ACFPNEVIHFVSPHYLEDLINRLDQFNPQK 506
            C+P E++ + SP Y + L+ R++Q+ P K
Sbjct: 479 NCYPEEIVKYYSPGYSDTLLERVEQYQPSK 508

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|146085436|ref|XP_001465274.1| putative axoneme central apparatus protein [Leishmania infantum JPCM5] gi|398014591|ref|XP_003860486.1| axoneme central apparatus protein, putative [Leishmania donovani] gi|134069371|emb|CAM67523.1| putative axoneme central apparatus protein [Leishmania infantum JPCM5] gi|322498707|emb|CBZ33780.1| axoneme central apparatus protein, putative [Leishmania donovani]

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/510 (36%), Positives = 291/510 (57%), Gaps = 5/510 (0%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           MS + +  + D YQ+AR+ FVQT++  A KP+ I  L+   V+ L+ PLL D VPS+Q +
Sbjct: 1   MSNRVILQTFDEYQKARVRFVQTIADLASKPANIEALQHAGVMQLLRPLLLDSVPSVQQS 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   +G+L  +   ++ + V+  +++  ++  L  QN+ YKK+A  +L  VA+   + A 
Sbjct: 61  AALAIGRLANSSE-EMAENVVSGDVLTQLVYSLGDQNRFYKKSAAFVLRSVARHSPQLAQ 119

Query: 121 LIED-KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
            + D + +++++  L +FDP  + +AA ALG +A+ N   A+ +V  GA+PPLV  +  P
Sbjct: 120 AVADSQAVEALVGCLEEFDPTVKESAAWALGYVARHNADLAQEVVDKGAVPPLVLCVQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +LSLK  AA  L  I KHSPELA+S  D D I  L   + + +  +K     CLA IAK 
Sbjct: 180 ELSLKRVAASTLGDIAKHSPELAQSIVDQDAITHLAPLIASSDAKLKRQVCQCLAQIAKH 239

Query: 240 SPSLASTIADGATTLAVEHLTYPHG-LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA  + +G     +  L      +VQKNAAT +R++ KH   LA LVV AGG+  L+
Sbjct: 240 SVELAELVVEGEIFPKIFLLLADSDEVVQKNAATCIREIAKHTPELAQLVVNAGGVGALV 299

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
                  G   LP IM LGY+SA SE +A  +I   G+  L   L+   ++ ++ AAAW+
Sbjct: 300 EYTTTTKGSTRLPGIMTLGYLSAFSETLALAVIVAHGIMPLADALEKEAEDHIRAAAAWS 359

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           LGQ+G+HS D+  A+ + NVL  LL        SD+L++K K AL  +I  C     LE 
Sbjct: 360 LGQLGRHSADHAKAVADCNVLPRLLDVYLSPSSSDDLQTKSKRALKAIIQHCVYLPALEP 419

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTIN 476
           +L  +  +++L  +   +AK+LP D  A+R FV +  L  VQ I  EP   +A  ++ IN
Sbjct: 420 LLHPDAPQDVLKYVCGQYAKVLPTDVAAKREFVANRGLATVQRIKAEPGSSLAESIQIIN 479

Query: 477 ACFPNEVIHFVSPHYLEDLINRLDQFNPQK 506
           +CFP E++ + SP Y +  I +++ ++ Q+
Sbjct: 480 SCFPPEIVEYYSPEYAQTFIEKIENYHVQQ 509

Source: Leishmania infantum JPCM5

Species: Leishmania infantum

Genus: Leishmania

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|157868683|ref|XP_001682894.1| putative axoneme central apparatus protein [Leishmania major strain Friedlin] gi|68126350|emb|CAJ04349.1| putative axoneme central apparatus protein [Leishmania major strain Friedlin]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 186/510 (36%), Positives = 290/510 (56%), Gaps = 5/510 (0%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           MS + +  + D YQ+AR+ FVQT++  A KP+ I  L+   V+ L+ PLL D VPS+Q +
Sbjct: 1   MSNRVILQTFDEYQKARVRFVQTIAELASKPANIEALQHAGVMQLLRPLLLDSVPSVQQS 60

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   +G+L  +   ++ + V+  +++  ++  L  QN+ YKK+A  +L  VA+   + A 
Sbjct: 61  AALAIGRLANSSE-EMAENVVSGDVLTQLVYSLGDQNRFYKKSAAFVLRSVARHSPQLAQ 119

Query: 121 LIED-KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
            + D + +++++  L +FDP  + + A ALG +A+ N   A+ +V  GA+PPLV  +  P
Sbjct: 120 AVADSQAVEALVGCLEEFDPTVKESVAWALGYVARHNADLAQEVVDKGAVPPLVLCVQEP 179

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +LSLK  AA  L  I KHSPELA+S  D D I  L   + + +  +K     CLA IAK 
Sbjct: 180 ELSLKRVAASTLGDIAKHSPELAQSIVDQDAITHLAPLIASSDAKLKRQVCQCLAQIAKH 239

Query: 240 SPSLASTIADGATTLAVEHLTYPHG-LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA  + +G     +  L      +VQKNAAT +R++ KH   LA LVV AGG+  L+
Sbjct: 240 SVELAELVVEGEIFPKIFLLLADSDEVVQKNAATCIREIAKHTPELAQLVVNAGGVGALV 299

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
                  G   LP IM LGY+SA SE +A  +I   G+  L   L+   ++ ++ AAAW+
Sbjct: 300 EYTTATKGSTRLPGIMTLGYLSAFSETLALAVIVAHGIMPLADALEKEAEDHIRAAAAWS 359

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           LGQ+G+HS D+  A+ + NVL  LL        SD+L++K K AL  +I  C     LE 
Sbjct: 360 LGQLGRHSADHAKAVADCNVLPRLLDVYLSPSSSDDLQTKSKRALKAIIQHCVYLPALEP 419

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTIN 476
           +L  +  +++L  +   +AK+LP D  A+R FV +  L  VQ I  EP   +A  ++ IN
Sbjct: 420 LLHPDAPQDVLKYVCGQYAKVLPTDVAAKREFVANRGLATVQRIKAEPGSSLAESIQIIN 479

Query: 477 ACFPNEVIHFVSPHYLEDLINRLDQFNPQK 506
           +CFP E++ + SP Y +  I +++ ++ Q+
Sbjct: 480 SCFPPEIVEYYSPEYAQTFIEKIENYHVQQ 509

Source: Leishmania major strain Friedlin

Species: Leishmania major

Genus: Leishmania

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|389603936|ref|XP_003723113.1| putative axoneme central apparatus protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|322504855|emb|CBZ14641.1| putative axoneme central apparatus protein [Leishmania braziliensis MHOM/BR/75/M2904]

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 290/510 (56%), Gaps = 5/510 (0%)

Query: 1   MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
           MS + +  + D YQ+AR+ FVQT++  A KP+ I  L+   V+ L+ PLL D VPS+Q +
Sbjct: 144 MSNRVILQTFDEYQKARVRFVQTIADLASKPANIEALQQAGVMQLLRPLLLDSVPSVQQS 203

Query: 61  ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
           A   +G+L  +   ++ + V+  +++  ++  L  QN+ YKK+A  +L  VA+   + A 
Sbjct: 204 AALAIGRLANSSE-EMAENVVSGDVLTQLVYSLGDQNRFYKKSAAFVLRSVARHSPQLAQ 262

Query: 121 LIED-KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
            + D + + +++  L +FDP  + +AA ALG +A+ N   A+ +V  GA+PPLV  +  P
Sbjct: 263 AVADSQAVVALVGCLEEFDPTVKESAAWALGYVARHNADLAQEVVDKGAVPPLVLCVQEP 322

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
           +LSLK  AA  L  I KHSPELA+S  D D I  L   + + +  +K     CLA IAK 
Sbjct: 323 ELSLKRVAASTLSDIAKHSPELAQSIVDQDAITHLAPLITSSDAKLKRQVCQCLAQIAKH 382

Query: 240 SPSLASTIADGATTLAVEHLTYPHG-LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
           S  LA  + +G     +  L      +VQ+NAAT +R++ KH   LA LVV AGG+  L+
Sbjct: 383 SVELAELVVEGEIFPKIFLLLADSDEVVQRNAATCIREIAKHTPELAQLVVNAGGVGALV 442

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
                  G   LP +M LGY+SA SE +A  +I   G+  L   L+   ++ ++ AAAW+
Sbjct: 443 EYTSTTRGSTRLPGVMTLGYLSAFSETLALAVIVAHGIVPLADTLEKESEDHIRAAAAWS 502

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           LGQ+G+HS D+  A+ + NVL  LL        SD+L++K K AL  +I  C     LE 
Sbjct: 503 LGQLGRHSADHAKAVADRNVLPRLLDAYLNPGSSDDLQTKSKRALKAIIQHCVYLPALEP 562

Query: 419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTIN 476
           +L  +  +++L  +   +AK+LP D  A+R FV +  L  +Q I  EP   +A  ++ IN
Sbjct: 563 LLHPDAPQDVLKYVCGQYAKVLPTDVAAKREFVANRGLATIQRIKAEPGSSLAESIQIIN 622

Query: 477 ACFPNEVIHFVSPHYLEDLINRLDQFNPQK 506
           +CFP E++ + SP Y +  I +++ ++ Q+
Sbjct: 623 SCFPPEIVEYYSPEYAQTFIEKIENYHVQQ 652

Source: Leishmania braziliensis MHOM/BR/75/M2904

Species: Leishmania braziliensis

Genus: Leishmania

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
UNIPROTKB|E1C6P7	508	SPAG6 "Uncharacterized protein	0.920	0.982	0.342	6.5e-74
RGD|1310892	507	Spag6 "sperm associated antige	0.928	0.992	0.335	4.1e-72
UNIPROTKB|Q32L54	509	SPAG6 "Sperm associated antige	0.924	0.984	0.337	1.1e-71
UNIPROTKB|C1JEX7	509	SPAG6 "Sperm associated antige	0.924	0.984	0.335	2.9e-71
UNIPROTKB|O75602	509	SPAG6 "Sperm-associated antige	0.920	0.980	0.332	3.7e-71
MGI|MGI:1354388	507	Spag6 "sperm associated antige	0.924	0.988	0.333	4.8e-71
POMBASE|SPCC962.03c	542	cut15 "karyopherin Cut15" [Sch	0.793	0.793	0.212	4.9e-07
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.215	0.218	0.25	8.4e-07
UNIPROTKB|E1C8F9	876	E1C8F9 "Uncharacterized protei	0.468	0.289	0.229	9.6e-07
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.485	0.487	0.207	3.6e-06

UNIPROTKB|E1C6P7 SPAG6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 175/511 (34%), Positives = 273/511 (53%)

Query:     1 MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
             MS++ V    + YQ AR  FVQ ++  + +P  I  L++  V+ L+ PLL D VP+IQ  
Sbjct:     1 MSQRQVLQVFEQYQSARTHFVQAVAELSARPQNIGTLREAGVISLLRPLLLDVVPTIQQT 60

Query:    61 ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA- 119
             A   LG+L      D+ + V++ +++  ++  L++QN+ YKK A  +L  V +   + A 
Sbjct:    61 AALALGRLAYFND-DLAEAVVKEDILPQLVCSLSEQNRFYKKAAAFVLRAVGKHSPQLAQ 119

Query:   120 GLIEDKDLDSIISSLHDFDPDTRXXXXXXXXXXXKDNKHFAERIVQCGALPPLVQILASP 179
              ++E   L++++  L DFDP  +           + N   ++ +V  GA+P LV  +  P
Sbjct:   120 AIVECGALEALVICLEDFDPGVKEGAAWALGYIARHNSELSQAVVDAGAVPLLVLCIQEP 179

Query:   180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
             +++LK  AA  L  I KHSPELA++  D   I  L + + N +  +K      L+ IAK 
Sbjct:   180 EIALKRIAASTLSDISKHSPELAQTVVDAGAIAYLAQMILNPDAKLKCQVLSALSQIAKH 239

Query:   240 SPSLASTIADGAT-TLAVEHLTYPHGLVQKNAATLLRDMCKHXXXXXXXXXXXXXXXXXX 298
             S  LA  + +     + +  +      V+KN ATL+R++ KH                  
Sbjct:   240 SVDLAELVVEAEIFPVVLTCMKDSDEYVKKNGATLIREIAKHSPELSQFIVNAGGVAAV- 298

Query:   299 XXIDCNG---GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355
               IDC G   G   LP IM LGY++A SE ++  +I  +G+  L T L   H++ ++ AA
Sbjct:   299 --IDCIGSCKGTVRLPGIMMLGYVAAHSENLSMAVIVSKGIPPLCTCLLEEHEDHIKAAA 356

Query:   356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKE 415
             AW LGQIG+H+ ++  A+ E NVL TLLS       S++L+ K K AL  ++ KC     
Sbjct:   357 AWALGQIGRHTPEHARAVAETNVLGTLLSMYMDIRSSEDLQLKAKRALKNILQKCTYLPA 416

Query:   416 LEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLK 473
             LE  LL +    ++  I+  F+K+LP D  ARR FVTS  L+KVQEI  EP   +  ++ 
Sbjct:   417 LEP-LLHDAPPNIMKHIVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYIN 475

Query:   474 TINACFPNEVIHFVSPHYLEDLINRLDQFNP 504
             TIN C+P EV+ + SP Y E L+ R++ + P
Sbjct:   476 TINNCYPEEVVRYYSPGYSEMLLERVENYQP 506

GO:0015630 "microtubule cytoskeleton" evidence=IEA

RGD|1310892 Spag6 "sperm associated antigen 6" [Rattus norvegicus (taxid:10116)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 171/509 (33%), Positives = 267/509 (52%)

Query:     1 MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
             MS++ V    + YQ+AR  FVQ ++  A +P  I  L++  V+ L+ PLL D VP+IQ  
Sbjct:     1 MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMSLLRPLLLDVVPTIQQT 60

Query:    61 ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
             A   LG+L    + D+ + V++ +++  ++  L +QN+ YKK A  +L  V +   + A 
Sbjct:    61 AALALGRL-ANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQ 119

Query:   121 LIEDKD-LDSIISSLHDFDPDTRXXXXXXXXXXXKDNKHFAERIVQCGALPPLVQILASP 179
              I D   LD+++  L DFDP  +           + N   ++ +V  GA+P LV  +  P
Sbjct:   120 AIVDCGALDTLVICLEDFDPGVKEAAAWALGYIARHNTELSQAVVDAGAIPLLVLCIQEP 179

Query:   180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
             +++LK  AA AL  I KHSPELA++  D   I  L + + N +  +K      L+ IAK 
Sbjct:   180 EIALKRIAASALSDISKHSPELAQTVVDAGAIAHLAQMILNPDAKLKRQVLSALSQIAKH 239

Query:   240 SPSLASTIADGAT-TLAVEHLTYPHGLVQKNAATLLRDMCKHXXXXXXXXXXXXXXXXXX 298
             S  LA  + +     + +  L      V+KNA TL+R++ KH                  
Sbjct:   240 SVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNACTLIREIAKHTPELSQLIVNAGGVAAVI 299

Query:   299 XXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
               I  + G   LP IM LGY++A SE +A  +I  +GV  L   L    ++ ++ AAAW 
Sbjct:   300 DCIGSSKGNIRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSICLSEEPEDHIKAAAAWA 359

Query:   359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
             LGQ+G+H+ ++  A+   N L  LLS       S++L+ K K A+  ++ KC     LE 
Sbjct:   360 LGQLGRHTPEHARAVAVTNTLPVLLSLYMSAESSEDLQLKSKKAIKNILQKCTYLPALEP 419

Query:   419 MLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTIN 476
              L  +    +L  ++  F+K+LP D  ARR FVTS  L+KVQEI  EP   +  ++ +IN
Sbjct:   420 FLY-DAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSIN 478

Query:   477 ACFPNEVIHFVSPHYLEDLINRLDQFNPQ 505
              C+P E++ + SP Y E L+ R+D + PQ
Sbjct:   479 NCYPEEIVRYYSPGYSETLLQRVDSYQPQ 507

GO:0007283 "spermatogenesis" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO

UNIPROTKB|Q32L54 SPAG6 "Sperm associated antigen 6" [Bos taurus (taxid:9913)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 172/509 (33%), Positives = 267/509 (52%)

Query:     1 MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
             MS++ V    + YQ+AR  FVQ ++  A +P  I  L++  V+ L+ PLL D VP+IQ  
Sbjct:     1 MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMALLRPLLLDVVPTIQQT 60

Query:    61 ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
             A   LG+L    + D+ + V++ +++  ++  L +QN+ YKK A  +L  V +   + A 
Sbjct:    61 AALALGRL-ANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQ 119

Query:   121 LIEDKD-LDSIISSLHDFDPDTRXXXXXXXXXXXKDNKHFAERIVQCGALPPLVQILASP 179
              I D   LD+++  L DFDP  +           + N   ++ +V  GA+P LV  +  P
Sbjct:   120 AIVDCGALDTLVICLEDFDPGVKEAAAWALGYIARHNAELSQAVVDAGAVPLLVLCIQEP 179

Query:   180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
             +++LK  A  AL  I KHSPELA++  D  VI  L + + N +  +K      L+ IAK 
Sbjct:   180 EIALKRIAVSALSDIAKHSPELAQTVVDAGVIAHLAQMILNPDAKLKRQVLSALSQIAKH 239

Query:   240 SPSLASTIADGAT-TLAVEHLTYPHGLVQKNAATLLRDMCKHXXXXXXXXXXXXXXXXXX 298
             S  LA  + +     + +  L      V+KNA+TL+R++ KH                  
Sbjct:   240 SVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLIVNAGGVAAVI 299

Query:   299 XXI-DCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357
               I  C G    LP IM LGY++A SE +A  +I  +GV  L   L    ++ ++ AAAW
Sbjct:   300 DCIGSCKGNIR-LPGIMLLGYVAAHSENLAMAVIISKGVPQLSLCLSEEPEDHIKAAAAW 358

Query:   358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELE 417
              LG IG+H+ ++  A+   N L  LLS    T  S++L+ K K A+  ++ KC     LE
Sbjct:   359 ALGHIGRHTPEHARAVAVTNTLPVLLSLYMSTESSEDLQVKSKKAIKNILQKCTYLPALE 418

Query:   418 QMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTI 475
               L  +    +L  ++  F+K+LP D  ARR FVTS  L+KVQEI  EP   +  ++ +I
Sbjct:   419 PFLY-DAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSI 477

Query:   476 NACFPNEVIHFVSPHYLEDLINRLDQFNP 504
             N C+P E++ + SP Y E L+ R+D + P
Sbjct:   478 NNCYPEEIVRYYSPGYSETLLQRVDSYQP 506

GO:0030317 "sperm motility" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

UNIPROTKB|C1JEX7 SPAG6 "Sperm associated antigen 6" [Sus scrofa (taxid:9823)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 171/509 (33%), Positives = 268/509 (52%)

Query:     1 MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
             MS++ V    + YQ+AR  FVQ ++  A +P  I  L++  V+ L+ PLL D VP+IQ  
Sbjct:     1 MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMSLLRPLLLDVVPTIQQT 60

Query:    61 ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
             A   LG+L    + D+ + V++ +++  ++  L +QN+ YKK A  +L  V +   + A 
Sbjct:    61 AALALGRL-ANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQ 119

Query:   121 LIEDKD-LDSIISSLHDFDPDTRXXXXXXXXXXXKDNKHFAERIVQCGALPPLVQILASP 179
              I D   LD+++  L DFDP  +           + N   ++ +V  GA+P LV  +  P
Sbjct:   120 AIVDCGALDTLVICLEDFDPGVKEAAAWALGYIARHNAELSQAVVDAGAIPLLVLCIQEP 179

Query:   180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
             +++LK  AA AL  I KHSPELA++  D   I  L + + N +  +K      L+ IAK 
Sbjct:   180 EIALKRIAASALSDIAKHSPELAQTVVDAGAIAHLAQMILNPDAKLKRQILSALSQIAKH 239

Query:   240 SPSLASTIADGAT-TLAVEHLTYPHGLVQKNAATLLRDMCKHXXXXXXXXXXXXXXXXXX 298
             S  LA  + +     + +  L      V+KNA+TL+R++ KH                  
Sbjct:   240 SVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLIVNAGGVAAVI 299

Query:   299 XXI-DCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357
               I  C G    LP IM LGY++A SE +A  +I  +GV  L   L    ++ ++ AAAW
Sbjct:   300 DCIGSCKGNIR-LPGIMMLGYVAAHSENLAMAVIISKGVPQLSVCLSEEPEDHIKAAAAW 358

Query:   358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELE 417
              LGQIG+++ ++  A+   N L  LLS    T  S++L+ K K A+  ++ KC     LE
Sbjct:   359 ALGQIGRYTPEHARAVAVTNTLPVLLSLYMCTESSEDLQVKSKKAIKNILQKCTYLPALE 418

Query:   418 QMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTI 475
               L  +    +L  ++  F+K+LP D  ARR FVTS  L+KVQEI  EP   +  ++ +I
Sbjct:   419 PFLY-DAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSI 477

Query:   476 NACFPNEVIHFVSPHYLEDLINRLDQFNP 504
             N C+P E++ + SP Y + L+ R+D + P
Sbjct:   478 NNCYPEEIVRYYSPGYSDTLLQRVDSYQP 506

GO:0030317 "sperm motility" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

UNIPROTKB|O75602 SPAG6 "Sperm-associated antigen 6" [Homo sapiens (taxid:9606)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 170/511 (33%), Positives = 270/511 (52%)

Query:     1 MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
             MS++ V    + YQ+AR  FVQ ++  A +P  I  L++  V+ L+  LL D VP+IQ  
Sbjct:     1 MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMSLLRTLLLDVVPTIQQT 60

Query:    61 ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
             A   LG+L    + D+ + V++ +++  ++  L +QN+ YKK A  +L  V +   + A 
Sbjct:    61 AALALGRL-ANYNDDLAEAVVKCDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQ 119

Query:   121 LIEDKD-LDSIISSLHDFDPDTRXXXXXXXXXXXKDNKHFAERIVQCGALPPLVQILASP 179
              I D   LD+++  L DFDP  +           + N   ++ +V  GA+P LV  +  P
Sbjct:   120 AIVDCGALDTLVICLEDFDPGVKEAAAWALRYIARHNAELSQAVVDAGAVPLLVLCIQEP 179

Query:   180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
             +++LK  AA AL  I KHSPELA++  D   +  L + + N +  +K      L+ ++K 
Sbjct:   180 EIALKRIAASALSDIAKHSPELAQTVVDAGAVAHLAQMILNPDAKLKHQILSALSQVSKH 239

Query:   240 SPSLASTIADGAT-TLAVEHLTYPHGLVQKNAATLLRDMCKHXXXXXXXXXXXXXXXXXX 298
             S  LA  + +     + +  L      V+KNA+TL+R++ KH                  
Sbjct:   240 SVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNASTLIREIAKHTPELSQLVVNAGGVAAV- 298

Query:   299 XXIDCNG---GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355
               IDC G   G   LP IM LGY++A SE +A  +I  +GV  L   L    ++ ++ AA
Sbjct:   299 --IDCIGSCKGNTRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSVCLSEEPEDHIKAAA 356

Query:   356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKE 415
             AW LGQIG+H+ ++  A+   N L  LLS    T  S++L+ K K A+  ++ KC     
Sbjct:   357 AWALGQIGRHTPEHARAVAVTNTLPVLLSLYMSTESSEDLQVKSKKAIKNILQKCTYLPA 416

Query:   416 LEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLK 473
             LE  L  +    +L  ++  F+K+LP D  ARR FVTS  L+KVQEI  EP   +  ++ 
Sbjct:   417 LEPFLY-DAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYIN 475

Query:   474 TINACFPNEVIHFVSPHYLEDLINRLDQFNP 504
             +IN+C+P E++ + SP Y + L+ R+D + P
Sbjct:   476 SINSCYPEEIVRYYSPGYSDTLLQRVDSYQP 506

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0005930 "axoneme" evidence=TAS

GO:0007286 "spermatid development" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=IDA

MGI|MGI:1354388 Spag6 "sperm associated antigen 6" [Mus musculus (taxid:10090)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 170/509 (33%), Positives = 266/509 (52%)

Query:     1 MSRKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA 60
             MS++ V    + YQ+AR  FVQ ++  A +P  I  L++  V+ L+ PLL D VP+IQ  
Sbjct:     1 MSQRQVLQVFEQYQKARTQFVQMVAELATRPQNIETLQNAGVMSLLRPLLLDVVPTIQQT 60

Query:    61 ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120
             A   LG+L    + D+ + V++ +++  ++  L +QN+ YKK A  +L  V +   + A 
Sbjct:    61 AALALGRL-ANYNDDLAEAVVKGDILPQLVYSLAEQNRFYKKAAAFVLRAVGKHSPQLAQ 119

Query:   121 LIEDKD-LDSIISSLHDFDPDTRXXXXXXXXXXXKDNKHFAERIVQCGALPPLVQILASP 179
              I D   LD+++  L DFDP  +           + N   ++ +V  GA+P LV  +  P
Sbjct:   120 AIVDCGALDTLVICLEDFDPGVKEAAAWALGYIARHNTELSQAVVDAGAIPLLVLCIQEP 179

Query:   180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239
             +++LK  AA AL  I KHSPELA++  D   I  L + + N +  +K      L+ IAK 
Sbjct:   180 EIALKRIAASALSDISKHSPELAQTVVDAGAIAHLAQMILNPDAKLKRQVLSALSQIAKH 239

Query:   240 SPSLASTIADGAT-TLAVEHLTYPHGLVQKNAATLLRDMCKHXXXXXXXXXXXXXXXXXX 298
             S  LA  + +     + +  L      V+KNA TL+R++ KH                  
Sbjct:   240 SVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNACTLIREIAKHTPELSQLIVNAGGVAAVI 299

Query:   299 XXI-DCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357
               I  C G    LP IM LGY++A SE +A  +I  +GV  L   L    ++ ++ AAAW
Sbjct:   300 DCIGSCKGNIR-LPGIMMLGYVAAHSENLAMAVIISKGVPQLSICLSEEPEDHIKAAAAW 358

Query:   358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELE 417
              LGQ+G+H+ ++  A+   N L  LLS       S++L+ K K A+  ++ KC     LE
Sbjct:   359 ALGQLGRHTPEHARAVAVTNTLPVLLSLYMSPESSEDLQLKSKKAIKNILQKCTYLPALE 418

Query:   418 QMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI--EPTPEIAPHLKTI 475
               L  +    +L  ++  F+K+LP D  ARR FVTS  L+KVQEI  EP   +  ++ +I
Sbjct:   419 PFLY-DAPPNILKHVVGQFSKVLPHDSKARRLFVTSGGLKKVQEIKAEPGSLLQEYINSI 477

Query:   476 NACFPNEVIHFVSPHYLEDLINRLDQFNP 504
             N C+P E++ + SP Y + L+ R+D + P
Sbjct:   478 NNCYPEEIVRYYSPGYSDTLLQRVDSYQP 506

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

GO:0030317 "sperm motility" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

POMBASE|SPCC962.03c cut15 "karyopherin Cut15" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 148 (57.2 bits), Expect = 4.9e-07, P = 4.9e-07
 Identities = 98/462 (21%), Positives = 178/462 (38%)

Query:    92 DLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD--------SIISSLHDFDPDTRX 143
             ++ KQ +         L  V +  E    L +DK+ D         ++ +L+  D + + 
Sbjct:    37 EIRKQKREENLNKRRNLVDVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQI 96

Query:   144 XXXXXXXXX-XKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA 202
                        K+     ++++  G +P  V+ L+     LK  A++AL  +   S    
Sbjct:    97 QATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLSHENNLLKFEASWALTNVASGSSNQT 156

Query:   203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTY 261
                 + + +P+ +  L++ E +V+  A   L +IA DSP     +   G     +  +  
Sbjct:   157 HVVVEANAVPVFVSLLSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIES 216

Query:   262 PHGL-VQKNAATLLRDMCKHXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMS 320
                L + +N+   L +MC+                     I        + A+ A+ Y+S
Sbjct:   217 NRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLS 276

Query:   321 AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI--GKHSVDNVTALCEENV 378
               + +  + II+      L  +L  P   Q+Q  A  ++G I  G      V   C    
Sbjct:   277 DGANEKIQAIIDAGIPRRLVELLMHP-SAQVQTPALRSVGNIVTGDDVQTQVIINC--GA 333

Query:   379 LSTLLSKITQTCVSDNL-KSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFA 437
             LS LLS ++     D + K  C    NI      N  +++ ++  N+   L+  +  A  
Sbjct:   334 LSALLSLLSSP--RDGVRKEACWTISNIT---AGNSSQIQYVIEANIIPPLIHLLTTADF 388

Query:   438 KILPCDPVARRSFVTSHCLRKVQEIEPTPE---IAPHLKTINACFPNEVIHFVSPHYLED 494
             KI   +     S  TS   R+  +I    E   I P L  + AC  N++I  V+   +E+
Sbjct:   389 KIQK-EACWAISNATSGGARRPDQIRYLVEQGAIKP-LCNLLACQDNKIIQ-VALDGIEN 445

Query:   495 L--INRLDQFNPQKSSNLPDC--KDSGSGNPSGSAQSLQRSE 532
             +  +  LD+ N     NL     +D+G  +     Q+   SE
Sbjct:   446 ILRVGELDRANNPDKINLYAVYVEDAGGMDLIHECQNSSNSE 487

GO:0000087 "M phase of mitotic cell cycle" evidence=IMP

GO:0005525 "GTP binding" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=NAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0006606 "protein import into nucleus" evidence=IDA;IMP

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=TAS

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0008565 "protein transporter activity" evidence=ISO

GO:0030261 "chromosome condensation" evidence=IMP

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0033554 "cellular response to stress" evidence=IGI

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
 Identities = 31/124 (25%), Positives = 55/124 (44%)

Query:   161 ERIVQCGALPPLVQILAS---PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217
             E ++  G +P  V+ L     PQL  +  AA+AL  I   + E  +   +   +P+ ++ 
Sbjct:   114 EEVIDAGVVPRFVEFLTREDYPQLQFE--AAWALTNIASGTSENTKVVIEHGAVPIFVQL 171

Query:   218 LNNDEVNVKADAFLCLADIAKDSPSLASTI-ADGATTLAVEHLTYPHGL-VQKNAATLLR 275
             L +   +V+  A   L ++A DSP     +   GA    +  L     L + +NA   L 
Sbjct:   172 LASQSDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLS 231

Query:   276 DMCK 279
             + C+
Sbjct:   232 NFCR 235

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

UNIPROTKB|E1C8F9 E1C8F9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 148 (57.2 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 60/262 (22%), Positives = 112/262 (42%)

Query:    13 YQRARLCFVQTMSAFA-DKPSTIHFLKDLNVVDLIVPLL-ADKVPSIQHAALATLGKLMC 70
             Y   +L  ++T+   + D+   I  L +   +D ++ +L  ++   +   ALA LG   C
Sbjct:   204 YPVIQLLALKTLEVISKDREMRI-ILGENEGLDCLLKILETNEFNDLHVEALAVLGN--C 260

Query:    71 AKHVDIRQEVLERNLVALVLKDLTKQN-KHYKKTALHMLTCVAQQDERCAGLIEDKDLDS 129
              + V   Q + +   +  +L  +        +K A   +   A   E    ++ ++D++S
Sbjct:   261 LEDVHTMQLIRQTGGLKKLLSFVGVSTVPDIQKNAAKAIAKAASDSEN-RKILNEEDVES 319

Query:   130 IISSLHDFDPDTRXXXXXXXXXXXKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAF 189
              + +L + D D              +N   ++R      +P LVQ+L+S    +K AA  
Sbjct:   320 CLINLLEIDDDGVKVAASQAISAMCENLA-SKRAFGLQGIPQLVQLLSSDDEEVKEAAVI 378

Query:   190 ALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD 249
             AL  +   SP  A + ++ + I  L+K+LN +     A+A   L ++A   P   S  + 
Sbjct:   379 ALANLTTASPSNASAVAEAEGIEPLVKSLNAERHGAVANAATVLTNMAMQEPLRLSIQSH 438

Query:   250 GATTLAVEHLTYPHGLVQKNAA 271
             G  ++  E L      VQ  AA
Sbjct:   439 GVMSVLTEPLRSSSSQVQSRAA 460

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 56/270 (20%), Positives = 101/270 (37%)

Query:   163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
             +VQ G +P +VQ L+    + L+  AA+AL  I   + E      D   +PL +K L++ 
Sbjct:   115 VVQSGVVPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSA 174

Query:   222 EVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQ--KNAATLLRDMCK 279
                V+  A   L ++A DSP     +      +++    + H  +   +NA   L + C+
Sbjct:   175 SEEVREQAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCR 234

Query:   280 HXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSL 339
                                  +          A  AL Y+S  + +  + +I+   +  L
Sbjct:   235 GKPQPAFEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRL 294

Query:   340 QTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKC 399
               +L  P    L + A  T+G I         A+     L  LL+ +  T      K  C
Sbjct:   295 VQLLAHPSPSVL-IPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEAC 353

Query:   400 KNALNILIPKCENPKELEQMLLGNVSEELL 429
                 NI      N  +++++    +   L+
Sbjct:   354 WTISNIT---AGNTSQIQEVFQAGIIRPLI 380

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JLI7	SPAG6_MOUSE	No assigned EC number	0.3600	0.9206	0.9842	yes	N/A
O75602	SPAG6_HUMAN	No assigned EC number	0.3561	0.9206	0.9803	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	542
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-09
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-09
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-08
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-05
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	6e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.003

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)

Query: 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
           E ++Q G LP LV +L+S   +++  AA+AL  +   + +  ++  +   +P L++ L +
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 221 DEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMC 278
           ++  V   A   L ++A         + + G     V  L   +  +QKNA   L ++ 
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 30/117 (25%), Positives = 58/117 (49%)

Query: 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ 180
           +I+   L +++S L   D + +  AA AL  L+  N    + +V+ G LP LVQ+L S  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237
             +  AA +AL  +     +      +   +P L+  L++   +++ +A   L+++A
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 5/237 (2%)

Query: 152 LAKDNKHFAERIVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDV 210
           L+K+     + ++  G +P  V+ +   Q   L+  AA+AL  I   + +  +   D   
Sbjct: 99  LSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGA 158

Query: 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GA--TTLAVEHLTYPHGLVQ 267
           +PL I+ L++ E +V+  A   L +IA DS      +   GA    L +   +  H  + 
Sbjct: 159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISML 218

Query: 268 KNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA 327
           +NA   L ++C+      +   ++  L  L +LI        + A  A+ Y+S    +  
Sbjct: 219 RNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKI 278

Query: 328 EQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
           + ++++   G L  +L      ++Q  A  ++G I   S D    +     L    S
Sbjct: 279 QAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRS 334

Length = 526

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 51/260 (19%), Positives = 105/260 (40%), Gaps = 46/260 (17%)

Query: 131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAA 188
           I  L   + D R  A  ALG +A D++   + ++QCGAL PL+ +L S    +S+   A 
Sbjct: 163 IQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT 222

Query: 189 FALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA 248
           + L  + +      + ++    +P+L K + + +  V  DA   ++ ++         + 
Sbjct: 223 WTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVL 282

Query: 249 D-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY 307
           D G     VE L++    +Q                                        
Sbjct: 283 DVGIPGRLVELLSHESAKIQT--------------------------------------- 303

Query: 308 NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV 367
              PA+ ++G +   S+   + II    + + +++L  P KE ++  A WT+  I   + 
Sbjct: 304 ---PALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNT 359

Query: 368 DNVTALCEENVLSTLLSKIT 387
           + + A+ + N++  L+  ++
Sbjct: 360 EQIQAVIDANLIPPLIHLLS 379

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 287 LVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP 346
            V+ AGGL  L+ L+  +       A  AL  +SA +    + ++E  G+ +L  +L+  
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 347 HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL 406
             E++  AA W L  +     DN   + E   +  L++      +  + +   KNA   L
Sbjct: 62  D-EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN-----LLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 78  QEVLERNLVALVLKDLTKQN-KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHD 136
           + V++   +  ++  L+  +    ++ A  +    A  ++    ++E   L +++  L  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 137 FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV 195
            D +    A  AL  LA   +     +++ G +P LV +L S    ++  A  AL  + 
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 12/205 (5%)

Query: 49  LLADKVPSIQHAALATLGKLM-CAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHM 107
           LL +  P  Q  A  TL KL+  A    I Q      L AL+L DL +   H      H+
Sbjct: 538 LLKNGGPKGQEIAAKTLTKLVRTADAATISQ------LTALLLGDLPESKVHVLDVLGHV 591

Query: 108 LTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG 167
           L+  + +D    G   +  L ++I  L     +T+  AA  L  +    +   E +    
Sbjct: 592 LSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE 651

Query: 168 ALPPLVQILASPQLSLKHAAAFALDGI---VKHSPELAESASDCDVIPLLIKALNNDEVN 224
            + P +++L +   ++   +A AL  +   +K + +++ +A   D I  LIK   +  + 
Sbjct: 652 IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAE--DAIKPLIKLAKSSSIE 709

Query: 225 VKADAFLCLADIAKDSPSLASTIAD 249
           V   A   LA++  D    A  +A+
Sbjct: 710 VAEQAVCALANLLSDPEVAAEALAE 734

Length = 2102

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 57/236 (24%), Positives = 90/236 (38%), Gaps = 33/236 (13%)

Query: 37  LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALV------- 89
           L     V L+  LL+D+ P ++ AA   LG+L   + V    E+LE +    V       
Sbjct: 70  LGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARA 129

Query: 90  ------------LKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI---ISSL 134
                       L +  +        A      +  +      L E  D ++I   I  L
Sbjct: 130 LGKLGDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELL 189

Query: 135 HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD-- 192
            D D D R  AA ALG L  +N   A+          LV+ L+   L ++ AA  AL   
Sbjct: 190 EDEDADVRRAAASALGQLGSENVEAADL---------LVKALSDESLEVRKAALLALGEI 240

Query: 193 GIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA 248
           G  +    LA++  D DVI  L+ A     +++   A   L  +  ++ ++    A
Sbjct: 241 GDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAA 296

Length = 335

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-Q 180
           +E   +D ++  L   + D +ANAA  L  L    +    +++  GA+  L+++L    +
Sbjct: 186 LEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE 245

Query: 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217
           +S++  AA AL+ +   S E  ++ +D   IP LI A
Sbjct: 246 VSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINA 282

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 20/67 (29%), Positives = 38/67 (56%)

Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
           I+ CGAL     +L+SP+ +++  A + +  I   + E  ++  D ++IP LI  L++ E
Sbjct: 323 IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE 382

Query: 223 VNVKADA 229
             +K +A
Sbjct: 383 YKIKKEA 389

Length = 526

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 22/92 (23%)

Query: 134 LHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG 193
           L D DP+ RA AA ALG L               ALP L+++L  P   ++ AAA AL G
Sbjct: 9   LSDPDPEVRAAAARALGELGDPE-----------ALPALLELLKDPDPEVRRAAAEAL-G 56

Query: 194 IVKHSPELAESASDCDVIPLLIKALNNDEVNV 225
            +             + +P L++ L +D+  V
Sbjct: 57  KLGDP----------EALPALLELLQDDDDAV 78

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	542
KOG0166|consensus	514		100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166|consensus	514		100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG4224|consensus	550		100.0
KOG4224|consensus	550		100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
KOG1048|consensus	717		99.9
KOG1048|consensus	717		99.85
KOG2122|consensus	2195		99.79
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.78
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.77
KOG4199|consensus	461		99.76
PRK09687	280	putative lyase; Provisional	99.75
KOG4199|consensus	461		99.75
KOG2171|consensus	1075		99.74
KOG4500|consensus	604		99.73
KOG4500|consensus	604		99.71
PRK09687	280	putative lyase; Provisional	99.71
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.71
KOG1222|consensus	791		99.69
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.66
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.65
KOG2122|consensus	2195		99.63
PTZ00429	746	beta-adaptin; Provisional	99.62
KOG1222|consensus	791		99.62
KOG0168|consensus	1051		99.61
KOG1293|consensus	678		99.58
KOG1061|consensus	734		99.58
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.57
KOG2171|consensus	1075		99.56
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.5
KOG1293|consensus	678		99.5
KOG2023|consensus	885		99.49
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.49
KOG1241|consensus	859		99.49
KOG2023|consensus	885		99.45
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.45
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.45
KOG1241|consensus	859		99.45
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.44
KOG0168|consensus	1051		99.41
PTZ00429	746	beta-adaptin; Provisional	99.37
KOG1060|consensus	968		99.28
KOG0946|consensus	970		99.26
KOG2759|consensus	442		99.26
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.23
KOG0946|consensus	970		99.22
KOG1062|consensus	866		99.21
KOG2160|consensus	342		99.19
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.18
KOG1062|consensus	866		99.12
KOG2759|consensus	442		99.12
KOG2160|consensus	342		99.09
KOG1059|consensus	877		99.08
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.05
KOG4413|consensus	524		99.03
KOG0213|consensus	1172		98.93
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.92
TIGR02270	410	conserved hypothetical protein. Members are found	98.9
KOG1789|consensus	2235		98.89
TIGR02270	410	conserved hypothetical protein. Members are found	98.85
KOG0212|consensus	675		98.84
KOG3678|consensus	832		98.82
KOG3678|consensus	832		98.82
KOG0212|consensus	675		98.8
KOG0213|consensus	1172		98.76
KOG4413|consensus	524		98.75
KOG1824|consensus	1233		98.75
PF05536	543	Neurochondrin: Neurochondrin	98.73
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.71
KOG1242|consensus	569		98.7
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.7
KOG2973|consensus	353		98.67
KOG1824|consensus	1233		98.66
KOG1517|consensus	1387		98.63
KOG1061|consensus	734		98.62
KOG2973|consensus	353		98.62
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.6
KOG1059|consensus	877		98.6
KOG2259|consensus	823		98.6
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.55
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.53
KOG1242|consensus	569		98.52
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.51
KOG4535|consensus	728		98.51
KOG1517|consensus	1387		98.49
KOG1058|consensus	948		98.49
KOG1077|consensus	938		98.48
COG5369	743	Uncharacterized conserved protein [Function unknow	98.47
KOG2259|consensus	823		98.44
KOG0567|consensus	289		98.41
KOG1943|consensus	1133		98.38
KOG0211|consensus	759		98.37
COG5369	743	Uncharacterized conserved protein [Function unknow	98.37
KOG0211|consensus	759		98.34
KOG1060|consensus	968		98.33
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.31
KOG4646|consensus	173		98.27
KOG4646|consensus	173		98.27
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.27
KOG2734|consensus	536		98.21
KOG1077|consensus	938		98.2
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.19
KOG2734|consensus	536		98.18
KOG0915|consensus	1702		98.18
PF05536	543	Neurochondrin: Neurochondrin	98.17
KOG1789|consensus	2235		98.16
KOG1240|consensus	1431		98.16
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.11
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.07
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.04
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.02
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.98
KOG0567|consensus	289		97.98
KOG4535|consensus	728		97.98
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.96
KOG1240|consensus	1431		97.94
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.93
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.92
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.84
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.83
KOG1058|consensus	948		97.81
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.79
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.77
KOG1078|consensus	865		97.75
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.74
PRK14707	2710	hypothetical protein; Provisional	97.67
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.63
KOG0915|consensus	1702		97.58
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.52
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.49
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.45
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.44
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.44
KOG1020|consensus	1692		97.41
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.41
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.35
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.34
KOG4151|consensus	748		97.32
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.3
KOG1943|consensus	1133		97.28
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.27
KOG1991|consensus	1010		97.25
KOG4151|consensus	748		97.21
KOG3036|consensus	293		97.2
KOG1991|consensus	1010		97.18
KOG1248|consensus	1176		97.12
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.11
KOG4653|consensus	982		97.07
KOG2274|consensus	1005		97.07
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.06
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.05
KOG1020|consensus	1692		97.04
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.04
KOG4653|consensus	982		97.04
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.03
KOG3036|consensus	293		97.02
KOG2062|consensus	929		97.0
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.98
KOG2062|consensus	929		96.96
KOG1967|consensus	1030		96.96
KOG2274|consensus	1005		96.93
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.88
KOG1248|consensus	1176		96.87
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.8
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.76
KOG1078|consensus	865		96.73
KOG1967|consensus	1030		96.72
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.69
PRK14707	2710	hypothetical protein; Provisional	96.64
KOG1832|consensus	1516		96.64
PF05004	309	IFRD: Interferon-related developmental regulator (	96.57
KOG1566|consensus	342		96.53
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.53
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.51
KOG1243|consensus	690		96.47
KOG3665|consensus	699		96.47
KOG0414|consensus	1251		96.46
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.45
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.42
KOG2032|consensus	533		96.38
KOG2032|consensus	533		96.33
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	96.33
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.31
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	96.25
KOG0414|consensus	1251		96.25
PF05004	309	IFRD: Interferon-related developmental regulator (	96.2
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.14
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.0
KOG2956|consensus	516		95.95
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	95.9
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.87
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.86
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.85
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.82
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.78
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.71
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	95.65
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.61
KOG3665|consensus	699		95.57
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.46
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.44
KOG1832|consensus	1516		95.37
KOG2999|consensus	713		95.35
KOG1243|consensus	690		95.18
KOG2956|consensus	516		95.05
KOG2025|consensus	892		95.03
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.99
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.97
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.95
KOG2025|consensus	892		94.84
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.58
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.48
KOG2999|consensus	713		94.47
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.46
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.39
KOG2611|consensus	698		94.37
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.14
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.04
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.01
KOG1820|consensus	815		93.87
KOG1949|consensus	1005		93.75
KOG1788|consensus	2799		93.48
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.47
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.45
KOG0891|consensus	2341		93.35
KOG1788|consensus	2799		93.06
KOG1820|consensus	815		93.03
KOG2137|consensus	700		92.7
KOG1992|consensus	960		92.57
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	92.51
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	92.46
KOG4464|consensus	532		92.37
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.3
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.17
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.14
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.13
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.12
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	92.07
KOG2137|consensus	700		91.86
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.76
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.7
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.48
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.47
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	90.99
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	90.97
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	90.88
KOG1822|consensus	2067		90.61
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	90.51
KOG2933|consensus	334		90.4
KOG2933|consensus	334		90.4
KOG1822|consensus	2067		90.15
KOG1566|consensus	342		90.13
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	89.89
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.7
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.26
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	89.19
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.02
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	88.78
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	87.98
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.75
cd03561	133	VHS VHS domain family; The VHS domain is present i	87.23
KOG2611|consensus	698		87.19
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	87.0
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	86.8
COG5656	970	SXM1 Importin, protein involved in nuclear import	86.74
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.68
KOG0891|consensus	2341		86.08
KOG0413|consensus	1529		84.91
KOG1993|consensus	978		84.4
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.31
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	83.8
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	83.76
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	83.73
KOG1525|consensus	1266		83.51
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	83.24
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	82.99
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.18
PF08216	108	CTNNBL: Catenin-beta-like, Arm-motif containing nu	81.11
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	80.85

>KOG0166|consensus

Probab=100.00  E-value=1.2e-51  Score=397.65  Aligned_cols=397  Identities=19%  Similarity=0.279  Sum_probs=361.0

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594         86 VALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAER  162 (542)
Q Consensus        86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~  162 (542)
                      .+.++..+.+.++..+..+...++.+.+.  ++.+..++..|+++.+|..|... ++.++..|+|+|.|+++++.+..+.
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            67778888888988899999999997644  35555666779999999999755 5999999999999999999999999


Q ss_pred             HHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCh
Q psy12594        163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEV-NVKADAFLCLADIAKDSP  241 (542)
Q Consensus       163 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~  241 (542)
                      +++.|++|.|++++.+++..+++.|.|+|+|++.+++.++..+++.|++++|+.++..++. .+.+.+.|+|+|||++..
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999997765 799999999999999874


Q ss_pred             hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        242 SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       242 ~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                      .....-.-..++| |..++.+.|+++...++|++++|+.++++..+.+++.|++++|+.+|.+.++.++.+|++++||++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            3444444468999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHH
Q psy12594        321 AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCK  400 (542)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~  400 (542)
                      .+++.+++.+++.++++.|..++..++...++++|||+++||++|++++++.+++.|++|.|+.+|.+.  ++++|++|+
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--ef~~rKEAa  385 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--EFDIRKEAA  385 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc--chHHHHHHH
Confidence            999999999999999999999999766668999999999999999999999999999999999999988  479999999


Q ss_pred             HHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhh--------hHHHHhcchHHhhh
Q psy12594        401 NALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVAR--------RSFVTSHCLRKVQE  461 (542)
Q Consensus       401 ~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~--------~~~~~~g~~~~l~~  461 (542)
                      ||++|+..           ..+.+++||.+|. ..|.++...++.++.+++..++...        ..+.+.||+++++.
T Consensus       386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~-~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~  464 (514)
T KOG0166|consen  386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT-CPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN  464 (514)
T ss_pred             HHHHhhcccCCHHHHHHHHHcCCchhhhhccc-CCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH
Confidence            99999953           4678999999999 9999999999999999998765433        47889999999999


Q ss_pred             cC--CCCcHH-HHHHHHhccCccchhc
Q psy12594        462 IE--PTPEIA-PHLKTINACFPNEVIH  485 (542)
Q Consensus       462 l~--~~~~~~-~a~~~l~~~~~~~~~~  485 (542)
                      ++  .|.+++ +|..+|++||++|...
T Consensus       465 LQ~hen~~Iy~~A~~II~~yf~~e~~~  491 (514)
T KOG0166|consen  465 LQSHENEEIYKKAYKIIDTYFSEEDDE  491 (514)
T ss_pred             hhccccHHHHHHHHHHHHHhcCCCccc
Confidence            99  777888 5999999999977444

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.5e-50  Score=358.35  Aligned_cols=394  Identities=16%  Similarity=0.204  Sum_probs=352.8

Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhc--CChhhhhHhhcCChHHHHhhh-cCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQ--QDERCAGLIEDKDLDSIISSL-HDFDPDTRANAALALGGLAKDNKHFAE  161 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (542)
                      -+|.+.+-|-+++.+.+..+..-++.+.+  ++|.++.+++.|++|.++++| +.+....+.+|+|+|.|++++.....+
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            56888888888888889999888888653  356677799999999999999 455577788999999999998888788


Q ss_pred             HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcC
Q psy12594        162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKD  239 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~  239 (542)
                      .+++.|++|.++++|.+++.++++.+.|+|+|++.+++.+++.+.+.|++++++.++.+.  +..+.+.+.|+|+|||+.
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence            899999999999999999999999999999999999999999999999999999999866  458999999999999997


Q ss_pred             ChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594        240 SPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY  318 (542)
Q Consensus       240 ~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~  318 (542)
                      ...-...-.-...+| |..++-..|+++...|+|++.+|+....+..+.+.+.|..++|+++|.+++..++.+|++.+||
T Consensus       232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN  311 (526)
T COG5064         232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN  311 (526)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence            543334334457899 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHH
Q psy12594        319 MSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSK  398 (542)
Q Consensus       319 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~  398 (542)
                      +..+++.+++.+++.|+++.+..+|.+.. +.+|++|||+++|+++++.++.+.+++.+++|.|+.+|...+  ..+|++
T Consensus       312 IVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae--~k~kKE  388 (526)
T COG5064         312 IVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE--YKIKKE  388 (526)
T ss_pred             eeecCccceehheecccHHHHHHHhcChh-hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH--HHHHHH
Confidence            99999999999999999999999999854 599999999999999999999999999999999999999874  589999


Q ss_pred             HHHHHHHHHh-------------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhh-----------hHHHHhc
Q psy12594        399 CKNALNILIP-------------KCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVAR-----------RSFVTSH  454 (542)
Q Consensus       399 a~~aL~nl~~-------------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~-----------~~~~~~g  454 (542)
                      ||||+.|...             ..|++++||++|. ..|..+...++.++.|++..++..+           .++.+.|
T Consensus       389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~-~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Ag  467 (526)
T COG5064         389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD-VVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAG  467 (526)
T ss_pred             HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh-ccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcc
Confidence            9999999842             3478999999999 8999999999999999999875432           2445699


Q ss_pred             chHHhhhcC--CCCcHH-HHHHHHhccCccc
Q psy12594        455 CLRKVQEIE--PTPEIA-PHLKTINACFPNE  482 (542)
Q Consensus       455 ~~~~l~~l~--~~~~~~-~a~~~l~~~~~~~  482 (542)
                      |.+.+..++  .|.+++ +|..+|++||.+|
T Consensus       468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee  498 (526)
T COG5064         468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE  498 (526)
T ss_pred             cHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence            999999998  778887 7999999999755

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.3e-43  Score=390.26  Aligned_cols=485  Identities=17%  Similarity=0.175  Sum_probs=409.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC---hHHH-HHHHhcCcHHHH
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH---VDIR-QEVLERNLVALV   89 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~---~~~~-~~i~~~~~l~~L   89 (542)
                      ...|..++.++.+++.+++++..++..|++|+|+.+|++.+++.|..|+.+|..|+  .+   +..+ ..++..|++|.|
T Consensus        72 ~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS--~~~~~D~~~~~I~v~~GaVp~L  149 (2102)
T PLN03200         72 LGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVS--SGGLSDHVGSKIFSTEGVVPSL  149 (2102)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHH--cCcchhhhhhhhhhhcCChHHH
Confidence            44677888999999999999999999999999999999999999999999999999  54   3333 446689999999


Q ss_pred             HHhhccCC---HHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy12594         90 LKDLTKQN---KHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ  165 (542)
Q Consensus        90 v~~L~~~~---~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  165 (542)
                      ++++++.+   ..++..++.+|.+++...+.... +++.|+++.++.+|+++++..+..|+++|.+++...++.+..+++
T Consensus       150 v~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe  229 (2102)
T PLN03200        150 WDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD  229 (2102)
T ss_pred             HHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            99999753   44677888999999988877766 889999999999999999999999999999999877888999999


Q ss_pred             cCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC---------HHHHHHHHHHHHH
Q psy12594        166 CGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE---------VNVKADAFLCLAD  235 (542)
Q Consensus       166 ~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~---------~~~~~~a~~~L~~  235 (542)
                      .|+||.|+++|+++ ++.+|+.|+|+|.||+.++++.+..+++.|++|.|++++..++         ..++++++|+|+|
T Consensus       230 aGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsN  309 (2102)
T PLN03200        230 AGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALAN  309 (2102)
T ss_pred             CCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHH
Confidence            99999999999864 5799999999999999999999999999999999999998554         3469999999999


Q ss_pred             HhcCChh-----------hHH-----------------------------------------------------------
Q psy12594        236 IAKDSPS-----------LAS-----------------------------------------------------------  245 (542)
Q Consensus       236 l~~~~~~-----------~~~-----------------------------------------------------------  245 (542)
                      ||.+.+.           .+.                                                           
T Consensus       310 Icgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALas  389 (2102)
T PLN03200        310 ICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALAS  389 (2102)
T ss_pred             HhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence            9985221           000                                                           


Q ss_pred             ---------HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHH
Q psy12594        246 ---------TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA  315 (542)
Q Consensus       246 ---------~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~  315 (542)
                               .+.+.++++ |+.++...+.+++..++|+|++++.++.+..+.+.+.|+++.|+++|.+++..++..|+++
T Consensus       390 l~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~  469 (2102)
T PLN03200        390 LYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVAL  469 (2102)
T ss_pred             hcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence                     001112334 4555555667899999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHH
Q psy12594        316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNL  395 (542)
Q Consensus       316 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v  395 (542)
                      |++++.++++.+..+++.|+++.|+++|.++ +..++++|+|+|+|++.++++.+..+.+.|+++.|+++|+++  +.++
T Consensus       470 L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~  546 (2102)
T PLN03200        470 LAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKG  546 (2102)
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHH
Confidence            9999999999999999999999999999985 469999999999999876555555555889999999999987  4699


Q ss_pred             HHHHHHHHHHHHh-----------------------------------------------hCCCchhhHHhhcCCCCHHH
Q psy12594        396 KSKCKNALNILIP-----------------------------------------------KCENPKELEQMLLGNVSEEL  428 (542)
Q Consensus       396 ~~~a~~aL~nl~~-----------------------------------------------~~~~i~~L~~lL~~~~~~~v  428 (542)
                      |+.|+|+|.|++.                                               ..+.++.|.+||+ +.++.+
T Consensus       547 q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~-sgs~~i  625 (2102)
T PLN03200        547 QEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS-SSKEET  625 (2102)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc-CCCHHH
Confidence            9999999999941                                               1356889999999 889999


Q ss_pred             HHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHH-HHHHHHhccCc----cchhcccCccchHHHHHHHhh
Q psy12594        429 LASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIA-PHLKTINACFP----NEVIHFVSPHYLEDLINRLDQ  501 (542)
Q Consensus       429 ~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~-~a~~~l~~~~~----~~~~~~~~~~~~~~~l~~~~~  501 (542)
                      .+.+.++|.++....++....++..|+++++..+.  .+.+++ ++.+.|..++.    ++...+...+..+.+.+.+..
T Consensus       626 kk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~  705 (2102)
T PLN03200        626 QEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS  705 (2102)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999998888888999999999999988  444455 46666666652    223344567778888888765


Q ss_pred             cCC
Q psy12594        502 FNP  504 (542)
Q Consensus       502 ~~~  504 (542)
                      .+.
T Consensus       706 ~d~  708 (2102)
T PLN03200        706 SSI  708 (2102)
T ss_pred             CCh
Confidence            533

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.5e-42  Score=380.25  Aligned_cols=481  Identities=17%  Similarity=0.189  Sum_probs=398.4

Q ss_pred             HHHHHHHHHhcCCCCch-HHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc
Q psy12594         18 LCFVQTMSAFADKPSTI-HFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK   95 (542)
Q Consensus        18 ~~~~~~l~~l~~~~~~~-~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~   95 (542)
                      ..++-+|.+++.+++++ ..++++|++|.|+.+|+++++..|..|+.+|.+++  .. ++.+..+++.|++|.|+++|++
T Consensus       165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La--ss~ee~~~aVIeaGaVP~LV~LL~s  242 (2102)
T PLN03200        165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM--MAFESSISKVLDAGAVKQLLKLLGQ  242 (2102)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--cCChHHHHHHHHCCCHHHHHHHHcc
Confidence            34568899999988877 45689999999999999999999999999998888  65 7789999999999999999986


Q ss_pred             -CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCC---------HHHHHHHHHHHHHhhcCChH------
Q psy12594         96 -QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFD---------PDTRANAALALGGLAKDNKH------  158 (542)
Q Consensus        96 -~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~---------~~~~~~a~~~L~~l~~~~~~------  158 (542)
                       .++.+|..|+++|.+++.++++.+. +++.|+++.|++++..++         ..+++.|.|+|.|++.+.+.      
T Consensus       243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~  322 (2102)
T PLN03200        243 GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLG  322 (2102)
T ss_pred             CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence             5579999999999999999888888 999999999999997554         34689999999998864211      


Q ss_pred             -----H--------------------------------------------------------------------HHHHHH
Q psy12594        159 -----F--------------------------------------------------------------------AERIVQ  165 (542)
Q Consensus       159 -----~--------------------------------------------------------------------~~~i~~  165 (542)
                           .                                                                    ++.+.+
T Consensus       323 ~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~  402 (2102)
T PLN03200        323 ELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH  402 (2102)
T ss_pred             HhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Confidence                 0                                                                    011122


Q ss_pred             cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy12594        166 CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS  245 (542)
Q Consensus       166 ~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  245 (542)
                      .++++.|+.++...+.++|..++|+|.+++.++.+.+..+.+.|++|.|+++|.+++..+++.++|++++++..+.+.+.
T Consensus       403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~  482 (2102)
T PLN03200        403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW  482 (2102)
T ss_pred             ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34455566666666678999999999999998899999999999999999999999999999999999999998877888


Q ss_pred             HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh
Q psy12594        246 TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE  324 (542)
Q Consensus       246 ~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  324 (542)
                      .+.+.|++| |+++|.+++..+++.|+|+|.|++.+.++....+.+.|+++.|+++|+++++..+..|+++|.++....+
T Consensus       483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d  562 (2102)
T PLN03200        483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD  562 (2102)
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence            999999999 9999999999999999999999999877776666688999999999999999999999999999963221


Q ss_pred             H-------------------------------------HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh
Q psy12594        325 Q-------------------------------------IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV  367 (542)
Q Consensus       325 ~-------------------------------------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  367 (542)
                      .                                     ..+.....++++.|.+++.+++ +.+++.|+|+|.+++.+++
T Consensus       563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs-~~ikk~Aa~iLsnL~a~~~  641 (2102)
T PLN03200        563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK-EETQEKAASVLADIFSSRQ  641 (2102)
T ss_pred             hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCh
Confidence            1                                     0111124589999999999975 5999999999999999999


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHH
Q psy12594        368 DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAF  436 (542)
Q Consensus       368 ~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l  436 (542)
                      ++...++..|+++.++.+|.++  +++++++|+|+|.|+..           ..|.+++|+++|+ +.+.++...++.+|
T Consensus       642 d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~-~~d~~v~e~Al~AL  718 (2102)
T PLN03200        642 DLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK-SSSIEVAEQAVCAL  718 (2102)
T ss_pred             HHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh-CCChHHHHHHHHHH
Confidence            9999999999999999999987  56999999999999962           3578999999999 99999999999999


Q ss_pred             HhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHHH-HHHH---HhccCccch-h--cccCccchHHHHHHHhhcCCC
Q psy12594        437 AKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAP-HLKT---INACFPNEV-I--HFVSPHYLEDLINRLDQFNPQ  505 (542)
Q Consensus       437 ~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~~-a~~~---l~~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~  505 (542)
                      .|++..++ .+..+.+.|++..|.++.  .++..++ |.+.   |.+-++.+. .  ....-+....+++.+...+.+
T Consensus       719 anLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~  795 (2102)
T PLN03200        719 ANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD  795 (2102)
T ss_pred             HHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence            99998765 456677889999999998  4555664 4444   444555332 2  112345566666666555333

>KOG0166|consensus

Probab=100.00  E-value=2.1e-40  Score=320.04  Aligned_cols=396  Identities=18%  Similarity=0.280  Sum_probs=345.9

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-  120 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-  120 (542)
                      .+.++..+.|+++..+..+...++++.+.......+.++..|.+|.+|++|.. .++.++..|+|+|.|+++++.+..+ 
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            67778888999999999999999999966554445556666999999999974 6699999999999999999999988 


Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCH-hHHHHHHHHHHHHhcCC-
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL-SLKHAAAFALDGIVKHS-  198 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~nl~~~~-  198 (542)
                      +++.|++|.|+.++.+++..+++.|+|+|+|++.+++.+|+.+++.|++++|+.++..++. .+.+.+.|+|.|||++. 
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999998774 78999999999999976 


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                      |......+ ..++|.|..++.+.|+++...++|++++|+.+..+..+.+++.|+++ |+.+|.+.+..++..|+.++.|+
T Consensus       228 P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI  306 (514)
T KOG0166|consen  228 PSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI  306 (514)
T ss_pred             CCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence            32222222 56789999999999999999999999999999888999999999999 99999999999999999999999


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA  356 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  356 (542)
                      +.++....+.+++.|+++.|..++. ++...++..|+|+|+|++.++.++.+.+++.+++|.|+.++.+.. -.+|++|+
T Consensus       307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAa  385 (514)
T KOG0166|consen  307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAA  385 (514)
T ss_pred             eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHH
Confidence            9999999999999999999999999 556669999999999999999999999999999999999999964 68999999


Q ss_pred             HHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh------------------hCCCchhhH
Q psy12594        357 WTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP------------------KCENPKELE  417 (542)
Q Consensus       357 ~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~------------------~~~~i~~L~  417 (542)
                      |+++|++.+ ++++...+++.|.++.++++|.-.  +.++-..+.-+|.|+.+                  .++.+..+.
T Consensus       386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~--D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE  463 (514)
T KOG0166|consen  386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP--DVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIE  463 (514)
T ss_pred             HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC--ChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHH
Confidence            999999865 678999999999999999999765  45677778888888853                  234455554


Q ss_pred             HhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594        418 QMLLGNVSEELLASILCAFAKILPCD  443 (542)
Q Consensus       418 ~lL~~~~~~~v~~~~l~~l~~ll~~~  443 (542)
                      .|=. ..+.++-+.+...+.+....+
T Consensus       464 ~LQ~-hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  464 NLQS-HENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             Hhhc-cccHHHHHHHHHHHHHhcCCC
Confidence            4444 555567777777776665543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=7.3e-41  Score=298.86  Aligned_cols=362  Identities=17%  Similarity=0.248  Sum_probs=328.0

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      -+|.|..-|.|+|-+.+..|..-++++.+.++.+..+.++++|++|.++++|. ++....+..|+|+|.|++++.....+
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            56888888889999999999999999997777777788899999999999995 57788899999999999999888888


Q ss_pred             -HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC--HhHHHHHHHHHHHHhcC
Q psy12594        121 -LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ--LSLKHAAAFALDGIVKH  197 (542)
Q Consensus       121 -~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~nl~~~  197 (542)
                       +++.|++|.++++|.+++.++++.++|+|+|++.+++.+++.+++.|++++++.++.+..  ..+.+.+.|+|.|||++
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence             899999999999999999999999999999999999999999999999999999998764  58899999999999996


Q ss_pred             C-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594        198 S-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR  275 (542)
Q Consensus       198 ~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~  275 (542)
                      . |......+ ...+|.|.+++...|+++...|+|++++|+....+....++..|+.+ |+.+|.+++..++..++..+.
T Consensus       232 knP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG  310 (526)
T COG5064         232 KNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG  310 (526)
T ss_pred             CCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence            4 22223333 46789999999999999999999999999999888899999999999 999999999999999999999


Q ss_pred             HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594        276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA  355 (542)
Q Consensus       276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  355 (542)
                      |+..++....+.+++.|+++.+..+|.++...+++.|||+|+|+..++.++.+.+++.+.+|+|+.++.. .+-.++++|
T Consensus       311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEA  389 (526)
T COG5064         311 NIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEA  389 (526)
T ss_pred             CeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHH
Confidence            9999998888889999999999999999999999999999999999999999999999999999999998 456899999


Q ss_pred             HHHHHHhhcC---ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        356 AWTLGQIGKH---SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       356 ~~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      ||++.|.+.+   .|+..+.+.+.|++..|.++|.-.+  ..+-+-+.-++.|++
T Consensus       390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d--Nkiiev~LD~~eniL  442 (526)
T COG5064         390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD--NKIIEVALDAIENIL  442 (526)
T ss_pred             HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC--ccchhhhHHHHHHHH
Confidence            9999999876   4788999999999999999999763  246666777888875

>KOG4224|consensus

Probab=100.00  E-value=4.2e-33  Score=251.38  Aligned_cols=392  Identities=20%  Similarity=0.240  Sum_probs=336.4

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ...+.+..-++++.++.+|..|..++++++  .+-+.+..+++.+++..|+.-+..+..++|..+..++.+++..++...
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlA--Vn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~  161 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLA--VNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV  161 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccce--eccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence            345666777889999999999999999999  887788888889999999988888889999999999999998864444


Q ss_pred             hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594        120 GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP  199 (542)
Q Consensus       120 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~  199 (542)
                      ++...|++.++.++-++.|..+|..+..+|.++.. ..++++.++..|++|.|+.++++.++.+|+.|+.+++||+- +.
T Consensus       162 kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~  239 (550)
T KOG4224|consen  162 KIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DR  239 (550)
T ss_pred             hhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hH
Confidence            49999999999998889999999999999999986 66779999999999999999999999999999999999998 67


Q ss_pred             HHHHHhhhCC--ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        200 ELAESASDCD--VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       200 ~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                      ..++.+.+.+  .++.|+.++.+++++++..|.-+|.|++.+. +++..+++.|.+| ++.+|+++.-......+.|++|
T Consensus       240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn  318 (550)
T KOG4224|consen  240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN  318 (550)
T ss_pred             HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence            7888888777  9999999999999999999999999999987 5888899999999 9999999976666777789999


Q ss_pred             HhcCChHHHHHHHhcCCHHHHHHhhhcCCcc-chHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594        277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGY-NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA  355 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  355 (542)
                      ++.+.-. .-.+.+.|++.+||++|+..+.+ ++..|..+|.||+...+.....+.++|.++.+..++..++- .+|...
T Consensus       319 isihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv-svqsei  396 (550)
T KOG4224|consen  319 ISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV-SVQSEI  396 (550)
T ss_pred             cccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh-hHHHHH
Confidence            9976533 33477899999999999987665 99999999999999888899999999999999999999764 899988


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC---------------chhhHHhh
Q psy12594        356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN---------------PKELEQML  420 (542)
Q Consensus       356 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~---------------i~~L~~lL  420 (542)
                      ..++..++ .++..+..+.+.|.++.|+..+-+.  +++++-.|+.||.|+..+.+.               -..|.+.+
T Consensus       397 sac~a~La-l~d~~k~~lld~gi~~iLIp~t~s~--s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl  473 (550)
T KOG4224|consen  397 SACIAQLA-LNDNDKEALLDSGIIPILIPWTGSE--SEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFL  473 (550)
T ss_pred             HHHHHHHH-hccccHHHHhhcCCcceeecccCcc--chhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence            88898884 4566788999999999999999887  579999999999999754322               12455555


Q ss_pred             cCCCCHHHHHHHHHHHHhhCCC
Q psy12594        421 LGNVSEELLASILCAFAKILPC  442 (542)
Q Consensus       421 ~~~~~~~v~~~~l~~l~~ll~~  442 (542)
                      . +.+..+...+.|.|..++..
T Consensus       474 ~-S~~~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  474 A-SHELTFRHIARWTIQQLLED  494 (550)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHh
Confidence            5 44545555666666555443

>KOG4224|consensus

Probab=100.00  E-value=2.3e-31  Score=240.26  Aligned_cols=405  Identities=14%  Similarity=0.160  Sum_probs=343.5

Q ss_pred             HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHH
Q psy12594         20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKH   99 (542)
Q Consensus        20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~   99 (542)
                      +-..+.+++-+-+++..+++.+++.+|+.-+.++..++|..++.++.+|+  ..++++..+...|.+.++.++-++.+..
T Consensus       105 a~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLa--T~d~nk~kiA~sGaL~pltrLakskdir  182 (550)
T KOG4224|consen  105 AGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLA--TFDSNKVKIARSGALEPLTRLAKSKDIR  182 (550)
T ss_pred             hhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhh--ccccchhhhhhccchhhhHhhcccchhh
Confidence            44567778888888989999999998888888888899999999999999  6688889999999999999988889999


Q ss_pred             HHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhcc
Q psy12594        100 YKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG--ALPPLVQILA  177 (542)
Q Consensus       100 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~ll~  177 (542)
                      +|.++..+|.++....+..+.++..|++|.|+.+++++|+++|..++.++.+++. +...++.+.+.+  ++|.|++++.
T Consensus       183 vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd  261 (550)
T KOG4224|consen  183 VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMD  261 (550)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHh
Confidence            9999999999998655444449999999999999999999999999999999997 455688888887  9999999999


Q ss_pred             CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HH
Q psy12594        178 SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AV  256 (542)
Q Consensus       178 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~  256 (542)
                      ++++.++-.|..+|+||+. +.+....+++.|.+|.++++++++..+.....+.++.|++.+. -....+.+.|.+. |+
T Consensus       262 ~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLV  339 (550)
T KOG4224|consen  262 DGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLV  339 (550)
T ss_pred             CCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHH
Confidence            9999999999999999999 6778889999999999999999998888888888999999885 3667788899999 99


Q ss_pred             HhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCc
Q psy12594        257 EHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG  335 (542)
Q Consensus       257 ~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  335 (542)
                      .+|... +++++.+|..+|++|+.........+++.|.+|.+..++.+...+++...-.++..|+.. +.....+.+.|.
T Consensus       340 rlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi  418 (550)
T KOG4224|consen  340 RLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGI  418 (550)
T ss_pred             HHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCC
Confidence            999988 577999999999999988888888899999999999999999999998888888888655 445667889999


Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHc------CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        336 VGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEE------NVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       336 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~------~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      ++.|+.+..+.+ .+++-+|+.+|.|++..-. +-..+++.      |.-..|++.+.++.  ..++.-+.|++..+...
T Consensus       419 ~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss~v~-~YarviEawd~P~~gi~g~L~Rfl~S~~--~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  419 IPILIPWTGSES-EEVRGNAAAALINLSSDVE-HYARVIEAWDHPVQGIQGRLARFLASHE--LTFRHIARWTIQQLLED  494 (550)
T ss_pred             cceeecccCccc-hhhcccHHHHHHhhhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHh
Confidence            999999999865 5999999999999965543 33334332      55677888888763  47899999999999865


Q ss_pred             CCCchhhHHhhcCCCCHHHHHHHHHHHHh
Q psy12594        410 CENPKELEQMLLGNVSEELLASILCAFAK  438 (542)
Q Consensus       410 ~~~i~~L~~lL~~~~~~~v~~~~l~~l~~  438 (542)
                      -  .+++..+++ ++| ++.+..-..+.+
T Consensus       495 h--~~~~~~~i~-~~d-dii~~~~~~~~r  519 (550)
T KOG4224|consen  495 H--DLPLTAFIQ-SSD-DIIELLNDIVAR  519 (550)
T ss_pred             C--CccHHHHHh-Cch-hHHHHHHHHHHH
Confidence            3  566667776 444 444333333333

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=3.2e-25  Score=227.27  Aligned_cols=476  Identities=15%  Similarity=0.151  Sum_probs=363.4

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcCCC---hHHHHHHHHHHHHhHccCChHHHHHHHhcCc-----
Q psy12594         15 RARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLADKV---PSIQHAALATLGKLMCAKHVDIRQEVLERNL-----   85 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s~~---~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~-----   85 (542)
                      +.+......|..++.+|+|-+.++.. -.+..|...|+.+.   .+....-+.++..++  ...+....+....+     
T Consensus       137 ~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS--~f~~fH~~l~~~kiG~l~m  214 (708)
T PF05804_consen  137 PEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFS--NFSQFHPILAHYKIGSLCM  214 (708)
T ss_pred             HHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--hHHHHHHHHHhccHHHHHH
Confidence            45778889999999999999988764 56778888886543   334444444444444  32222211111000     


Q ss_pred             -------------------------------------HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChH
Q psy12594         86 -------------------------------------VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD  128 (542)
Q Consensus        86 -------------------------------------l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~  128 (542)
                                                           .+.+-.+++ ....+...++.+|.|++.+.....++.+.|+++
T Consensus       215 ~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~-kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~  293 (708)
T PF05804_consen  215 EIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIR-KQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVS  293 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHH
Confidence                                                 011111122 223344566778999998775555589999999


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC
Q psy12594        129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC  208 (542)
Q Consensus       129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~  208 (542)
                      .|+++|++++.++...++.+|.+++- ..+++..+.+.|+++.|.+++++++..++..++++|.||+. +++.+..++..
T Consensus       294 ~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~  371 (708)
T PF05804_consen  294 LLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSL  371 (708)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHC
Confidence            99999999999999999999999997 45679999999999999999999999999999999999999 78899999999


Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHH
Q psy12594        209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLAN  286 (542)
Q Consensus       209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~  286 (542)
                      |++|.|+.++.++  ..+..++.+|.+++.++ +.+..+...+.+| ++.++... ++.+...++..+.|++.+ +.+++
T Consensus       372 GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaq  447 (708)
T PF05804_consen  372 GLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQ  447 (708)
T ss_pred             CCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHH
Confidence            9999999999854  56677999999999976 5888888889999 98876654 777888889999999954 55667


Q ss_pred             HHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594        287 LVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS  366 (542)
Q Consensus       287 ~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  366 (542)
                      .+.+.++++.|+.........   ..+..+.|++.+++.....+.  +.+..|+.++..+.+++...+++.+|+|+...+
T Consensus       448 lm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~  522 (708)
T PF05804_consen  448 LMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPD  522 (708)
T ss_pred             HHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence            788889999999876554432   234688999988755554444  588888899988777899999999999997766


Q ss_pred             hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh---------hCCCchhhHHhhcC-CCCHHHHHHHHHHH
Q psy12594        367 VDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP---------KCENPKELEQMLLG-NVSEELLASILCAF  436 (542)
Q Consensus       367 ~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~---------~~~~i~~L~~lL~~-~~~~~v~~~~l~~l  436 (542)
                      ....+.+.+.+++|.+.+.|..+...+++..+++..++.++.         +.+.++.|+.+|+. ..|.+++..++.++
T Consensus       523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f  602 (708)
T PF05804_consen  523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVF  602 (708)
T ss_pred             cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence            666666667899999999999887778899999999998852         45779999999983 44779999999999


Q ss_pred             HhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHHH----HHHHHhccCccchhcccC---ccchHHHHHHHhhcCC
Q psy12594        437 AKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAP----HLKTINACFPNEVIHFVS---PHYLEDLINRLDQFNP  504 (542)
Q Consensus       437 ~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~~----a~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~  504 (542)
                      ++++.+.+.....+.+.+.+..+.++.  .|.++++    +..+|..+-.++-.+.-.   .-++..+++.++..+.
T Consensus       603 ~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~~~~  679 (708)
T PF05804_consen  603 YQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVESQQL  679 (708)
T ss_pred             HHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhcccc
Confidence            999998665444445688888888887  7888875    788887775555333221   2345667777765443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=8.5e-25  Score=224.19  Aligned_cols=372  Identities=16%  Similarity=0.177  Sum_probs=315.0

Q ss_pred             HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHH
Q psy12594         20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKH   99 (542)
Q Consensus        20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~   99 (542)
                      +...|.|++.++.+...+++.|+++.|+++|++++.++...++..|.+|+  ...+++..|.+.|+++.|++++.+++..
T Consensus       269 ~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS--i~~ENK~~m~~~giV~kL~kLl~s~~~~  346 (708)
T PF05804_consen  269 AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS--IFKENKDEMAESGIVEKLLKLLPSENED  346 (708)
T ss_pred             HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence            35679999999999999999999999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC
Q psy12594        100 YKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS  178 (542)
Q Consensus       100 ~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~  178 (542)
                      ++..++.+|.|++.+. +.+. ++..|++|.|+.+|.++  ..+..++.+|.+++. +++.+..+...+++|.+++++-+
T Consensus       347 l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~  422 (708)
T PF05804_consen  347 LVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLE  422 (708)
T ss_pred             HHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHh
Confidence            9999999999999766 5555 99999999999999754  455678899999998 55678888889999999997655


Q ss_pred             -CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HH
Q psy12594        179 -PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AV  256 (542)
Q Consensus       179 -~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~  256 (542)
                       +++.+...+++.+.|++. ++.+.+.+.+.++++.|++........+   ....+.|++.+++..+..+.  +.+. |+
T Consensus       423 ~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~  496 (708)
T PF05804_consen  423 NSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLA  496 (708)
T ss_pred             CCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHH
Confidence             457778888999999999 6778888888899999998876543332   44689999999866666554  4566 88


Q ss_pred             HhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594        257 EHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSEQIAEQIIEL  333 (542)
Q Consensus       257 ~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  333 (542)
                      ..+..+ +++....++++|+||...+.++.+.+.+.+.+|.|...|..+  ++++...++..+|.++. ++.....+.+.
T Consensus       497 ~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~s  575 (708)
T PF05804_consen  497 KIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKS  575 (708)
T ss_pred             HHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhC
Confidence            888776 789999999999999988778888777889999999999765  34588889999998874 56777888899


Q ss_pred             CchHHHHHhhcCCC-hhhHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        334 QGVGSLQTILQCPH-KEQLQVAAAWTLGQIGKHSVDNVTALC-EENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       334 ~~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      |.++.|+.++.... ++++..+.++++.++..+.+ .+..++ +.+++..|++++.+.  +.++|+.|-.+|--+.
T Consensus       576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~--N~~ir~~~d~~Ldii~  648 (708)
T PF05804_consen  576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDK--NAEIRKVCDNALDIIA  648 (708)
T ss_pred             ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            99999999998755 37888899999999987754 555555 578999999999987  5689998888775544

>KOG1048|consensus

Probab=99.90  E-value=4.4e-22  Score=199.17  Aligned_cols=373  Identities=18%  Similarity=0.200  Sum_probs=297.1

Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH--HHH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE--LAE  203 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~--~~~  203 (542)
                      -++..+.+|.+.++.++..|+..+..++..+.+.+..+-+.|+|+.|+.++.+...+++.+|+++|.||..+...  +.-
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            467788999999999999999999999999999999999999999999999999999999999999999987655  777


Q ss_pred             HhhhCCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--------------ChhHH
Q psy12594        204 SASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--------------HGLVQ  267 (542)
Q Consensus       204 ~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--------------~~~v~  267 (542)
                      .+.+.++++.++.+++. .|.++++.+..+||||+..+. +...++. ..++ |...+-.+              +.++.
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence            88899999999999996 699999999999999998853 4444443 3344 44433211              36788


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhc------CCccchHHHHHHHhHhhcCCh----------------
Q psy12594        268 KNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDC------NGGYNSLPAIMALGYMSAQSE----------------  324 (542)
Q Consensus       268 ~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~----------------  324 (542)
                      .++++||+|++....+..+.+.+. |.|+.|+.++++      .+..-.++++.++.|++..-.                
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            999999999998887777777754 789999998874      355577888999999872111                


Q ss_pred             -------------------------------------HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh
Q psy12594        325 -------------------------------------QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV  367 (542)
Q Consensus       325 -------------------------------------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  367 (542)
                                                           .....++...++.....++....+..+.++++.+|.|++++..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                                 1112244445677767777766667899999999999998854


Q ss_pred             H----HHHHH-HHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh--------CCCchhhHHhhcCC-----CCHHHH
Q psy12594        368 D----NVTAL-CEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK--------CENPKELEQMLLGN-----VSEELL  429 (542)
Q Consensus       368 ~----~~~~l-~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~--------~~~i~~L~~lL~~~-----~~~~v~  429 (542)
                      .    .+..+ ....+++.++++|..++  ++|.+.++.+|.|+..+        ...++.|++.|.+.     .+++++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~--~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv  629 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDD--SDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTV  629 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCC--chHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHH
Confidence            3    33444 46789999999999884  58999999999999643        24689999999842     246999


Q ss_pred             HHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC----CCCcHHHHHHHHhccCccchhcccCccchHHHHHHHhhcCCC
Q psy12594        430 ASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE----PTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQ  505 (542)
Q Consensus       430 ~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  505 (542)
                      ..++..|.+++++...+.+.+.+.+|+++|..|.    +.+.++.|...+..+|.....+   ..|.+.-+++-++|.+.
T Consensus       630 ~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh---~~~kk~g~~q~~F~~~~  706 (717)
T KOG1048|consen  630 RAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH---FKLKKKGFKQQDFYDAL  706 (717)
T ss_pred             HHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh---hhHhhhhhHHHHHHhHH
Confidence            9999999999999999999999999999999997    2334555788888888754444   56777888888888554

>KOG1048|consensus

Probab=99.85  E-value=5.5e-19  Score=177.18  Aligned_cols=358  Identities=16%  Similarity=0.138  Sum_probs=285.4

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh--h
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER--C  118 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--~  118 (542)
                      -+|-.+.+|.+.++.+|..|+..+..++  .. .+.+..+...|+++.|+.+|.+.+.+++..|+.+|.||......  .
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlc--fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLC--FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHH--hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            3566778888999999999999999999  65 78888999999999999999999999999999999999876544  5


Q ss_pred             hh-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC--------------CHh
Q psy12594        119 AG-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP--------------QLS  182 (542)
Q Consensus       119 ~~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--------------~~~  182 (542)
                      .. +.+.++++.++++|.. .|.++++....+|+||++. +.++..++... +..|..-+-.+              +..
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccce
Confidence            55 8899999999999986 6899999999999999984 66666666554 55555544211              256


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCh--------------
Q psy12594        183 LKHAAAFALDGIVKHSPELAESASD-CDVIPLLIKALN------NDEVNVKADAFLCLADIAKDSP--------------  241 (542)
Q Consensus       183 ~~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~--------------  241 (542)
                      +...+.+||+|++..+.+.++.+.+ .|.|..|+..++      ..|....++|+..+.|++..-.              
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            7889999999999988888888775 577899888876      3467788999999999974321              


Q ss_pred             ------------------hhHH---------------------HHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcC
Q psy12594        242 ------------------SLAS---------------------TIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       242 ------------------~~~~---------------------~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~  280 (542)
                                        ..++                     ......++. -+.+|... +..+.+.++++|-|++..
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                              0000                     011223444 34555544 788999999999999877


Q ss_pred             ChH----HHHHH-HhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-----hh
Q psy12594        281 NLR----LANLV-VLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-----EQ  350 (542)
Q Consensus       281 ~~~----~~~~~-~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----~~  350 (542)
                      ...    ....+ ....+.+.|+++|+.+++.+...++.+|.|++.+..  .+.++...+++-|++.|..+..     ++
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sed  627 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSED  627 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence            532    23333 577899999999999999999999999999987633  2345557899999999987654     67


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594        351 LQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL  406 (542)
Q Consensus       351 v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl  406 (542)
                      +...+|.+|.|+...+....+.+.+.+.++.|+.+.++.. ++.+-+.|...|-.|
T Consensus       628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~-S~k~~kaAs~vL~~l  682 (717)
T KOG1048|consen  628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH-SPKEFKAASSVLDVL  682 (717)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC-CHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999999854 567777777777666

>KOG2122|consensus

Probab=99.79  E-value=6e-17  Score=169.24  Aligned_cols=363  Identities=14%  Similarity=0.126  Sum_probs=272.1

Q ss_pred             HHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC---ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc
Q psy12594         18 LCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK---VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT   94 (542)
Q Consensus        18 ~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~---~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~   94 (542)
                      ....+.+.+++.+++.+..++..|++|+|+++|...   +.+.+..|-.+|.+|.... ++-+..-.+.    .++.+| 
T Consensus       212 ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~----kvL~lL-  285 (2195)
T KOG2122|consen  212 EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREK----KVLHLL-  285 (2195)
T ss_pred             HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHH----HHHHHH-
Confidence            345688999999999999999999999999999643   4578888999999999322 2222221221    223333 


Q ss_pred             cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q psy12594         95 KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ  174 (542)
Q Consensus        95 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  174 (542)
                         .+++.++-.+-.-+-.+.+               ......+..-...|+.+|..++. ++++++.+-+.|++..+-.
T Consensus       286 ---eQIraYC~~~~~~lqar~~---------------~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIae  346 (2195)
T KOG2122|consen  286 ---EQIRAYCETCWTWLQARGP---------------AIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAE  346 (2195)
T ss_pred             ---HHHHHHHHHHHHHHHhcCC---------------CCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHH
Confidence               2344444333333322221               00111121222256666777766 6788999999999988888


Q ss_pred             hccCC------------CHhHHHHHHHHHHHHhcCCHHHHHH-hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-
Q psy12594        175 ILASP------------QLSLKHAAAFALDGIVKHSPELAES-ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS-  240 (542)
Q Consensus       175 ll~~~------------~~~~~~~a~~~L~nl~~~~~~~~~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-  240 (542)
                      |+...            ...+|+++..+|.||+.++..++.. ....|++..++..|.+...++....+.+|.||+=.. 
T Consensus       347 Ll~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD  426 (2195)
T KOG2122|consen  347 LLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRAD  426 (2195)
T ss_pred             HHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccc
Confidence            77431            2579999999999999977655443 346789999999999888899999999999998543 


Q ss_pred             hhhHHHHHhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHh-cCCHHHHHHhhhcCCcc----chHHHH
Q psy12594        241 PSLASTIADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCKHNLRLANLVVL-AGGLDGLLRLIDCNGGY----NSLPAI  313 (542)
Q Consensus       241 ~~~~~~~~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~i~~Lv~lL~~~~~~----~~~~a~  313 (542)
                      ...++.+.+.|-+. |+.+.-. ..+.....++.+||||+.|..++...+.. .|++..||.+|....+.    +...|-
T Consensus       427 ~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaG  506 (2195)
T KOG2122|consen  427 SNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAG  506 (2195)
T ss_pred             ccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCc
Confidence            34556666677777 7766544 47788899999999999998776665653 58899999999876443    677777


Q ss_pred             HHHhHhh---cCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCC
Q psy12594        314 MALGYMS---AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTC  390 (542)
Q Consensus       314 ~~L~~l~---~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~  390 (542)
                      .+|.|.+   ..++.+++.+.+++.+..|++.|++++ -.+..++|.+|+||.+.+++.++.+++.|+++.|.+++.+. 
T Consensus       507 GILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-  584 (2195)
T KOG2122|consen  507 GILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-  584 (2195)
T ss_pred             cHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc-eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-
Confidence            7887765   467788899999999999999999965 48889999999999999999999999999999999999987 


Q ss_pred             CChHHHHHHHHHHHHHHh
Q psy12594        391 VSDNLKSKCKNALNILIP  408 (542)
Q Consensus       391 ~~~~v~~~a~~aL~nl~~  408 (542)
                       +..+-..++.+|.|++.
T Consensus       585 -hkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  585 -HKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             -hhhhhhhHHHHHHHHhc
Confidence             45888999999999963

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.78  E-value=5.7e-15  Score=150.79  Aligned_cols=401  Identities=20%  Similarity=0.210  Sum_probs=293.8

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594         88 LVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG  167 (542)
Q Consensus        88 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g  167 (542)
                      .++.+|...+.+....++.+|..+........  ...+..+.|...|.++++.+|..+++.|.++..++....+.+.+.+
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            37788888788888888889998775432111  1456788999999999999999999999999988888888888999


Q ss_pred             ChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594        168 ALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI  247 (542)
Q Consensus       168 ~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  247 (542)
                      +++.++.++.+++.++...|+.+|.+++.+ +.....+++.+.++.|..++...+..+|..+..++.+++..+++....+
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~  198 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV  198 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999999999999999999999995 4455678788889999999998888999999999999999999899999


Q ss_pred             HhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCcc-----chHH-HHHHHhHhh
Q psy12594        248 ADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY-----NSLP-AIMALGYMS  320 (542)
Q Consensus       248 ~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-----~~~~-a~~~L~~l~  320 (542)
                      .+.|+++ ++..+.++|.-++.+++.+|..|+. .+...+.+.+.|+++.|..++.+...+     +... .+...++++
T Consensus       199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la  277 (503)
T PF10508_consen  199 VNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA  277 (503)
T ss_pred             HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence            9999999 9999999999999999999999998 777788899999999999999775332     2333 336777887


Q ss_pred             cCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHH-HHc-CChHHH----HHHHhcCCCChH
Q psy12594        321 AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTAL-CEE-NVLSTL----LSKITQTCVSDN  394 (542)
Q Consensus       321 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~-~~l~~L----~~ll~~~~~~~~  394 (542)
                      ...+....... ..++..+.+++.+ .+...+..|.-++|.++. +.+-...+ ... +.++..    .....++  ..+
T Consensus       278 ~~~~~~v~~~~-p~~~~~l~~~~~s-~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~--~~~  352 (503)
T PF10508_consen  278 RVSPQEVLELY-PAFLERLFSMLES-QDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSG--STE  352 (503)
T ss_pred             hcChHHHHHHH-HHHHHHHHHHhCC-CChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCC--chH
Confidence            75443332211 2456666677776 456888899999999964 45556666 333 344444    4444444  458


Q ss_pred             HHHHHHHHHHHHHhhCC---------------------Cch-hhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHH
Q psy12594        395 LKSKCKNALNILIPKCE---------------------NPK-ELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVT  452 (542)
Q Consensus       395 v~~~a~~aL~nl~~~~~---------------------~i~-~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~  452 (542)
                      +|..+..+|.++....+                     ... .+..+++ ..=++++..++..+..+....--.+.....
T Consensus       353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~  431 (503)
T PF10508_consen  353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLK-QPFPELRCAAYRLLQALAAQPWGQREICSS  431 (503)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHhC
Confidence            99999999999952211                     112 4555555 344789999999998887654333333334


Q ss_pred             hcchHHhhhcC--CCCcHHH----HHHHHhccCccchhcccCccchHHHHHHHhhc
Q psy12594        453 SHCLRKVQEIE--PTPEIAP----HLKTINACFPNEVIHFVSPHYLEDLINRLDQF  502 (542)
Q Consensus       453 ~g~~~~l~~l~--~~~~~~~----a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  502 (542)
                      .|.++.+.+=.  ++++.++    .++.|.+... ......   ....+++++.+|
T Consensus       432 ~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~-~~~~~~---~~~~~~~kL~~y  483 (503)
T PF10508_consen  432 PGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST-NASSVF---DDPEYLGKLQEY  483 (503)
T ss_pred             ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc-chhhcC---CCHHHHHHHHHH
Confidence            56666665544  5555553    3344433322 111211   123455577777

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.77  E-value=1.4e-14  Score=147.98  Aligned_cols=354  Identities=18%  Similarity=0.211  Sum_probs=273.1

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-Hh
Q psy12594         44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LI  122 (542)
Q Consensus        44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~  122 (542)
                      +.+...+.+.+.+....++.+|.++.  ........  ..+..+.+...|.++++.+|..++..+.++..++..... +.
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l--~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLL--SALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHH--hccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            33777788888888888889999999  44222121  455778889999999999999999999999988877666 78


Q ss_pred             hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594        123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA  202 (542)
Q Consensus       123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~  202 (542)
                      +.++++.++.++.+++..+...|+.+|.+++...+. .+.+.+.+.++.|..++..++..+|..+..++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            899999999999999999999999999999986555 4667788889999999998788899999999999999999999


Q ss_pred             HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--Ch---h-HHHHHHHHHH
Q psy12594        203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HG---L-VQKNAATLLR  275 (542)
Q Consensus       203 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~---~-v~~~a~~~L~  275 (542)
                      ..+.+.|+++.++..+.+.|.-++..++.+|..|+.. +...+.+.+.|+++ |..++.+.  |+   . ..-.....+.
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            9999999999999999998889999999999999995 46788889999999 99999877  33   1 1223336667


Q ss_pred             HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH-Hhh-----CchHHHHHhhcCCChh
Q psy12594        276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI-IEL-----QGVGSLQTILQCPHKE  349 (542)
Q Consensus       276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~-----~~l~~L~~ll~~~~~~  349 (542)
                      +++...|...... -...+..+.+++.+.++..+..|+.++|.++... +....+ ...     ..+..+.....+++ .
T Consensus       275 ~la~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~-~  351 (503)
T PF10508_consen  275 NLARVSPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGS-T  351 (503)
T ss_pred             HHHhcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCc-h
Confidence            7776544433211 1345567777888899999999999999998554 444444 332     23455555555544 4


Q ss_pred             hHHHHHHHHHHHhhcCChH----H----HHHHH---HcCChH-HHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        350 QLQVAAAWTLGQIGKHSVD----N----VTALC---EENVLS-TLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       350 ~v~~~a~~~L~~l~~~~~~----~----~~~l~---~~~~l~-~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ++|..++.+++++....++    .    .+...   ..+-.. .++.+++.+  -+++|..+...|..+..
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP--F~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP--FPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chHHHHHHHHHHHHHhc
Confidence            8999999999999543221    1    12222   224444 778888776  46999999888888854

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199|consensus

Probab=99.76  E-value=2e-15  Score=136.28  Aligned_cols=318  Identities=18%  Similarity=0.208  Sum_probs=255.8

Q ss_pred             HhCCchHHHHhhhc---CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHh
Q psy12594         38 KDLNVVDLIVPLLA---DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVA  112 (542)
Q Consensus        38 ~~~g~i~~L~~lL~---s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~  112 (542)
                      ...|..+.++.++.   +.+..+...++.+|..+.  ..   ...+.+..++..++++|..  ++.++....+.++..-|
T Consensus       101 ~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt--~~---qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac  175 (461)
T KOG4199|consen  101 GKNGAHDALITLLELAESPNESVLKKSLEAINSLT--HK---QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKAC  175 (461)
T ss_pred             ccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh--cC---CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            35677777766654   556778888888888888  44   2234567788999999874  66788888888999988


Q ss_pred             cCChhhhh-HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCC---------hHHHHHHHHcCChHHHHHhccCC-C
Q psy12594        113 QQDERCAG-LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDN---------KHFAERIVQCGALPPLVQILASP-Q  180 (542)
Q Consensus       113 ~~~~~~~~-~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~---------~~~~~~i~~~g~i~~L~~ll~~~-~  180 (542)
                      -..+..++ +++.++++.+.+.|.... ..+.....|++..+..++         ..+.+.+.+.|++..|++.++.. +
T Consensus       176 ~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d  255 (461)
T KOG4199|consen  176 IMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID  255 (461)
T ss_pred             HHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence            77777777 999999999997776543 456677889999887543         35678889999999999999864 5


Q ss_pred             HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CH---HHHHHHHHHHHHHhcCChhhHHHHHhhchHH-H
Q psy12594        181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND-EV---NVKADAFLCLADIAKDSPSLASTIADGATTL-A  255 (542)
Q Consensus       181 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L  255 (542)
                      |.+....+.+|..|+- ..+.+..+.+.|++..|+.++.+. +.   ++...++..|..|+..+ ..+..+++.|+.+ +
T Consensus       256 p~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~i  333 (461)
T KOG4199|consen  256 PDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKI  333 (461)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHH
Confidence            7888888999999998 678999999999999999999974 33   35578889999999887 4899999999999 8


Q ss_pred             HHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc--cchHHHHHHHhHhhcCChHHHHHHH
Q psy12594        256 VEHLTYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG--YNSLPAIMALGYMSAQSEQIAEQII  331 (542)
Q Consensus       256 ~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~  331 (542)
                      +.++...  +|.+...++.++..|+-..|+....+++.|+-...++.++....  .++.+|++.|.|++..+.++...++
T Consensus       334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l  413 (461)
T KOG4199|consen  334 ITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL  413 (461)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH
Confidence            8776543  89999999999999999999999999999999999999887543  4899999999999999888888887


Q ss_pred             hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594        332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK  364 (542)
Q Consensus       332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  364 (542)
                      . .+++.|+..-+..+ +.....|--+|..+..
T Consensus       414 ~-~GiE~Li~~A~~~h-~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  414 A-NGIEKLIRTAKANH-ETCEAAAKAALRDLGC  444 (461)
T ss_pred             h-ccHHHHHHHHHhcC-ccHHHHHHHHHHhcCc
Confidence            7 55666666666543 4677777777777743

>PRK09687 putative lyase; Provisional

Probab=99.75  E-value=3.7e-16  Score=146.36  Aligned_cols=256  Identities=19%  Similarity=0.128  Sum_probs=204.9

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      .--++.|..+|.+++..+|..|+.+|..+.            ....++.+..++.++++.+|..++++|+.+......  
T Consensus        22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--   87 (280)
T PRK09687         22 KLNDDELFRLLDDHNSLKRISSIRVLQLRG------------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--   87 (280)
T ss_pred             hccHHHHHHHHhCCCHHHHHHHHHHHHhcC------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence            345678889999999999999999999888            455677888888999999999999999998643211  


Q ss_pred             hHhhcCChHHHHhh-hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        120 GLIEDKDLDSIISS-LHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       120 ~~~~~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                         ....++.|..+ ++++++.||..|+.+|+++.......     ...+++.+...+.++++.+|..++++|+.+..  
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence               11356777777 67888999999999999986433211     11235667788888899999999999987754  


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                               ...++.|+.++.++++.+|..|+.+|+.+..+++         .+++ |+..|.+.+++|+..|+++|..+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     3467999999999999999999999999944443         5677 99999999999999999999886


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW  357 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  357 (542)
                      -.           ..++|.|+..|.+++  ++..++.+||++...           ..++.|..++...++..++..|.+
T Consensus       220 ~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~~  275 (280)
T PRK09687        220 KD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAID  275 (280)
T ss_pred             CC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHHH
Confidence            42           367889999998865  677899999988542           578899999985567889998988


Q ss_pred             HHHH
Q psy12594        358 TLGQ  361 (542)
Q Consensus       358 ~L~~  361 (542)
                      +|..
T Consensus       276 a~~~  279 (280)
T PRK09687        276 KLKR  279 (280)
T ss_pred             HHhc
Confidence            8753

>KOG4199|consensus

Probab=99.75  E-value=3.7e-15  Score=134.54  Aligned_cols=318  Identities=14%  Similarity=0.140  Sum_probs=251.6

Q ss_pred             hcCcHHHHHHhhc---cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcC--CCHHHHHHHHHHHHHhhcCC
Q psy12594         82 ERNLVALVLKDLT---KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHD--FDPDTRANAALALGGLAKDN  156 (542)
Q Consensus        82 ~~~~l~~Lv~~L~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~  156 (542)
                      ..|..+.++..+.   +++..+-..++.+|..+....|+   +.+..++..++.+|..  ++.++......++..-+-.+
T Consensus       102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd---l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h  178 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD---LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH  178 (461)
T ss_pred             cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc---hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence            4456666555433   46677777888888777654432   5667788999999864  35777777888888888888


Q ss_pred             hHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCC---------HHHHHHhhhCCChHHHHHhhcCC-CHHH
Q psy12594        157 KHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHS---------PELAESASDCDVIPLLIKALNND-EVNV  225 (542)
Q Consensus       157 ~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~---------~~~~~~~~~~~~i~~L~~ll~~~-~~~~  225 (542)
                      +.+++.+++.++.+.+.+.+... ...+.+...|+++-|..++         ....+.+...|++..|+..++.. +|++
T Consensus       179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~  258 (461)
T KOG4199|consen  179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS  258 (461)
T ss_pred             HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH
Confidence            89999999999999999777654 4568889999999988644         34456777788899999999854 7889


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-Chh---HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHh
Q psy12594        226 KADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGL---VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL  300 (542)
Q Consensus       226 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~---v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~l  300 (542)
                      ....+.+|..|+-.+ ++...+.+.|++. |++++.+. +..   ..+.++..|+.|+.. ......+++.|+.+.++.+
T Consensus       259 L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l  336 (461)
T KOG4199|consen  259 LVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITL  336 (461)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHH
Confidence            999999999999887 4777889999999 99999986 333   446788888899854 4445568889999999988


Q ss_pred             hhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594        301 IDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTALCEEN  377 (542)
Q Consensus       301 L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~  377 (542)
                      +..  .+|.+...++.++..|+-..|+....+++.|+-...++.++..+. ..++.+|||.+.|++.++.+++..++.. 
T Consensus       337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-  415 (461)
T KOG4199|consen  337 ALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-  415 (461)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-
Confidence            643  567788889999999999999999999999999999998887664 6799999999999999988887777776 


Q ss_pred             ChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        378 VLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       378 ~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      +++.|+..-+..  +++.+..|..||..|-
T Consensus       416 GiE~Li~~A~~~--h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  416 GIEKLIRTAKAN--HETCEAAAKAALRDLG  443 (461)
T ss_pred             cHHHHHHHHHhc--CccHHHHHHHHHHhcC
Confidence            456666666655  3578888888888763

>KOG2171|consensus

Probab=99.74  E-value=8.6e-15  Score=152.49  Aligned_cols=349  Identities=15%  Similarity=0.188  Sum_probs=249.7

Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC---hHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN---KHF  159 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---~~~  159 (542)
                      .++++.|++..+++++..|..|+.+|..+...-.....-.-..+.+.+.+.+.+++..+|..|++++..++...   ...
T Consensus       117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~  196 (1075)
T KOG2171|consen  117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE  196 (1075)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence            34566666777889999999999999998643222111011124556667777776559999999999988544   333


Q ss_pred             HHHHHHcCChHHHHHh----ccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHH
Q psy12594        160 AERIVQCGALPPLVQI----LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCL  233 (542)
Q Consensus       160 ~~~i~~~g~i~~L~~l----l~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L  233 (542)
                      ++.+..  .+|.++..    ++..+...-..+..+|..++...|......+ ..++..-..+..+.  +..+|..|+..|
T Consensus       197 ~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  197 VDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            344433  35555544    4556666778888899999987777666655 45666666666655  688999999999


Q ss_pred             HHHhcCChhhHHHH--HhhchHH-HHHhhcCC--C--------------hhHHHHHHHHHHHHhcCChHHHHHHHhcCCH
Q psy12594        234 ADIAKDSPSLASTI--ADGATTL-AVEHLTYP--H--------------GLVQKNAATLLRDMCKHNLRLANLVVLAGGL  294 (542)
Q Consensus       234 ~~l~~~~~~~~~~~--~~~~~i~-L~~lL~~~--~--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i  294 (542)
                      ..+++..+...+..  ....+++ ++.++.+.  |              +.....|..+|-.++.+-+...   +-.-.+
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~  350 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLF  350 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHH
Confidence            99998855333221  2244555 55555322  1              2256677788888877643221   114567


Q ss_pred             HHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594        295 DGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALC  374 (542)
Q Consensus       295 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  374 (542)
                      +.+-.++.++++..|.+|+.+|+.++.++.+.....+. .+++.++..+.+ +++.||.+|+.+++.+++.-....+.-.
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~  428 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKH  428 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence            78889999999999999999999999999988776554 788888999988 4579999999999999877666666666


Q ss_pred             HcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC------CchhhHH-----hhcCCCCHHHHHHHHHHHHhhCC
Q psy12594        375 EENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE------NPKELEQ-----MLLGNVSEELLASILCAFAKILP  441 (542)
Q Consensus       375 ~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~------~i~~L~~-----lL~~~~~~~v~~~~l~~l~~ll~  441 (542)
                      ..-+++.|+..+.+.. ++.|+..|+.++-|+...|.      +++.|+.     |++ ++.+.++..+..+|..+..
T Consensus       429 ~e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~-~~~~~v~e~vvtaIasvA~  504 (1075)
T KOG2171|consen  429 HERLPPALIALLDSTQ-NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ-SSKPYVQEQAVTAIASVAD  504 (1075)
T ss_pred             HHhccHHHHHHhcccC-chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH
Confidence            7778889999999875 67899999999999987753      3444444     445 7777888888888877644

>KOG4500|consensus

Probab=99.73  E-value=4.6e-15  Score=138.11  Aligned_cols=383  Identities=14%  Similarity=0.106  Sum_probs=277.8

Q ss_pred             HHHHHHHHHHhcCCCCchHHH----HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHH
Q psy12594         17 RLCFVQTMSAFADKPSTIHFL----KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLK   91 (542)
Q Consensus        17 r~~~~~~l~~l~~~~~~~~~l----~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~   91 (542)
                      +.-...++++.+.++.-|..|    ++++.+..|.....|++.++..++.++|++++  .+ .+.|..+.+.|+-+.+++
T Consensus        59 ~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiC--ydn~E~R~a~~~lgGaqivid  136 (604)
T KOG4500|consen   59 YLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNIC--YDNNENRAAFFNLGGAQIVID  136 (604)
T ss_pred             hhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhh--ccCchhHHHHHhcCCceehHh
Confidence            334456678888777666655    45677888888888999999999999999999  76 899999999999888888


Q ss_pred             hhcc----CC---HHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcC--CC-----------------------
Q psy12594         92 DLTK----QN---KHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHD--FD-----------------------  138 (542)
Q Consensus        92 ~L~~----~~---~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~--~~-----------------------  138 (542)
                      .|+.    ++   .+.-.-++..|.|..-++.+.+. +.+.|+++.|...+.-  .+                       
T Consensus       137 ~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~  216 (604)
T KOG4500|consen  137 VLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLY  216 (604)
T ss_pred             hhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhh
Confidence            7763    22   35566677789998888888888 9999999977655421  11                       


Q ss_pred             ---------------------HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-CC-------HhHHHHHHH
Q psy12594        139 ---------------------PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-PQ-------LSLKHAAAF  189 (542)
Q Consensus       139 ---------------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~-------~~~~~~a~~  189 (542)
                                           ++.++.....|...+. ++..+-.+.+.|.+..++.+++. ++       ..+-..++.
T Consensus       217 ~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~e  295 (604)
T KOG4500|consen  217 PFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAE  295 (604)
T ss_pred             hhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhh
Confidence                                 1122222223333322 33444455666777777777665 11       122223333


Q ss_pred             HHHHHhcCCHHHHHHhhhCC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC-----C
Q psy12594        190 ALDGIVKHSPELAESASDCD-VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY-----P  262 (542)
Q Consensus       190 ~L~nl~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~-----~  262 (542)
                      ...-|..+ .+....+...+ +++.+..++.+.|.+++..+.-+++|+++.+. ....+++.+.+. |++++..     +
T Consensus       296 l~vllltG-DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdg  373 (604)
T KOG4500|consen  296 LDVLLLTG-DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDG  373 (604)
T ss_pred             HhhhhhcC-chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            33334443 33444555444 78999999999999999999999999999986 555677889999 9999865     2


Q ss_pred             ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh-hCchHHHHH
Q psy12594        263 HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE-LQGVGSLQT  341 (542)
Q Consensus       263 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~  341 (542)
                      +.+++..++.+|+|+....+.... +...|+.+.++..++...|.+...-+.++.-+..+-+.....+.+ ...+..|++
T Consensus       374 nV~~qhA~lsALRnl~IPv~nka~-~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~  452 (604)
T KOG4500|consen  374 NVERQHACLSALRNLMIPVSNKAH-FAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD  452 (604)
T ss_pred             cchhHHHHHHHHHhccccCCchhh-ccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence            678899999999999976666555 667899999999999999999888888888776665544444433 356777787


Q ss_pred             hhcCCChhhHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        342 ILQCPHKEQLQVAAAWTLGQIGKH--SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       342 ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      .-+++.-..+--+..+.+.-+..+  ..+....+-.+|++..++..+...  +...+.+|..||+-+.
T Consensus       453 Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~--hi~mqnEalVal~~~~  518 (604)
T KOG4500|consen  453 WSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN--HINMQNEALVALLSTE  518 (604)
T ss_pred             hhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHh--hHHHhHHHHHHHHHHH
Confidence            777754345777788888888777  345667777899999999999876  4689999999998774

>KOG4500|consensus

Probab=99.71  E-value=6.3e-15  Score=137.19  Aligned_cols=404  Identities=13%  Similarity=0.089  Sum_probs=291.9

Q ss_pred             CCChHHHHHHHHHHHHhHccCChHHHHHHH----hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCC
Q psy12594         52 DKVPSIQHAALATLGKLMCAKHVDIRQEVL----ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKD  126 (542)
Q Consensus        52 s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~----~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~  126 (542)
                      ..+..++..+..++...+  ..+.-+..+.    +.+.+..|.+..++++.++..+++++|+|+|..+.+.+. +.+.|+
T Consensus        53 ~~~~tv~~~qssC~A~~s--k~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG  130 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRS--KNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG  130 (604)
T ss_pred             eccchhhhhhHHHHHHHh--hhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence            344566666777777777  6654444443    456677777777788899999999999999999988888 889999


Q ss_pred             hHHHHhhhcCC----C---HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHHHHHHHHhcC
Q psy12594        127 LDSIISSLHDF----D---PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       127 v~~Lv~lL~~~----~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~  197 (542)
                      -..+++.|+..    +   .+...-+...|.|...++.+.+..+.+.|+++.|...+.-  .+....+.......|+.+-
T Consensus       131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~  210 (604)
T KOG4500|consen  131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF  210 (604)
T ss_pred             ceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH
Confidence            77777777532    2   3566667788999999999999999999999998887654  3566667777777777653


Q ss_pred             CHH-HHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-C-------hhH
Q psy12594        198 SPE-LAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-H-------GLV  266 (542)
Q Consensus       198 ~~~-~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~-------~~v  266 (542)
                      -.+ ......+......+.+++... .+++++.+...|...+.++. ..-.+.+.|.++ +++++..- +       -..
T Consensus       211 ~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l  289 (604)
T KOG4500|consen  211 VCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNL  289 (604)
T ss_pred             HHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHH
Confidence            222 233445667777888888744 77889999999999998874 556677788888 98888762 1       223


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594        267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP  346 (542)
Q Consensus       267 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  346 (542)
                      ...++....-+..+++..........+++.++.++.+.+......+..+|||+++.+. .+..+++.+.+..|++++..+
T Consensus       290 ~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~  368 (604)
T KOG4500|consen  290 FKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQE  368 (604)
T ss_pred             HHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHh
Confidence            4455566666666666655544344489999999999999999999999999988754 556678889999999998764


Q ss_pred             Ch----hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-----------CC
Q psy12594        347 HK----EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK-----------CE  411 (542)
Q Consensus       347 ~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~-----------~~  411 (542)
                      ++    ...+.+++.+|.|+. -...++..++..|+.+.++..++...|  .+...-..++.-+...           .+
T Consensus       369 ~~vdgnV~~qhA~lsALRnl~-IPv~nka~~~~aGvteaIL~~lk~~~p--pv~fkllgTlrM~~d~qe~~a~eL~kn~~  445 (604)
T KOG4500|consen  369 KDVDGNVERQHACLSALRNLM-IPVSNKAHFAPAGVTEAILLQLKLASP--PVTFKLLGTLRMIRDSQEYIACELAKNPE  445 (604)
T ss_pred             cCCCccchhHHHHHHHHHhcc-ccCCchhhccccchHHHHHHHHHhcCC--cchHHHHHHHHHHHhchHHHHHHHhcCHH
Confidence            32    467889999999995 445567888999999999999998854  5555444444433321           11


Q ss_pred             CchhhHHhhcCCCCH-HHHHHHHHHHHhhCCC--ChhhhhHHHHhcchHHhhhcC
Q psy12594        412 NPKELEQMLLGNVSE-ELLASILCAFAKILPC--DPVARRSFVTSHCLRKVQEIE  463 (542)
Q Consensus       412 ~i~~L~~lL~~~~~~-~v~~~~l~~l~~ll~~--~~~~~~~~~~~g~~~~l~~l~  463 (542)
                      .+..|++--+ ++|. .+.-+....+.-+++.  ..+....+.++||++.+..+.
T Consensus       446 l~ekLv~Wsk-s~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~  499 (604)
T KOG4500|consen  446 LFEKLVDWSK-SPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMF  499 (604)
T ss_pred             HHHHHHHhhh-CCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHH
Confidence            1233333333 4454 3666777777666665  344445667899998888775

>PRK09687 putative lyase; Provisional

Probab=99.71  E-value=1.1e-15  Score=143.29  Aligned_cols=255  Identities=16%  Similarity=0.101  Sum_probs=203.3

Q ss_pred             CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594        125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES  204 (542)
Q Consensus       125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~  204 (542)
                      --++.|...|.+.+..+|..++++|..+..  +         .+++.+..+++++++.+|..++++|+.|..... .   
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~---------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--Q---------DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C---   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--c---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence            467899999999999999999999988753  2         236778889999999999999999999876321 1   


Q ss_pred             hhhCCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCCh
Q psy12594        205 ASDCDVIPLLIKA-LNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNL  282 (542)
Q Consensus       205 ~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~  282 (542)
                        ....++.|..+ ++++++.+|..++.+|++++......     ....++ +...+.+++..||..++++|..+..   
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---  157 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---  157 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence              12345777777 67889999999999999997544211     123566 7788888899999999999976542   


Q ss_pred             HHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHh
Q psy12594        283 RLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI  362 (542)
Q Consensus       283 ~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l  362 (542)
                              ...++.|+.++.++++.++..|+.+||.+...++         .+++.|+..+.+. +..+|..|.++|+.+
T Consensus       158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR  219 (280)
T ss_pred             --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence                    3467899999999999999999999999844333         3566788888874 569999999999998


Q ss_pred             hcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHHh
Q psy12594        363 GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAK  438 (542)
Q Consensus       363 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~  438 (542)
                        +++.         +++.|+..+.++    +++..++.+|+++-.. ..+|.|..+++.+.|+.+...+.++|..
T Consensus       220 --~~~~---------av~~Li~~L~~~----~~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        220 --KDKR---------VLSVLIKELKKG----TVGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             --CChh---------HHHHHHHHHcCC----chHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence              3443         789999999975    4888999999998755 5799999999635688999999888764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.71  E-value=7.3e-15  Score=160.74  Aligned_cols=277  Identities=18%  Similarity=0.168  Sum_probs=221.6

Q ss_pred             hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594         39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      +...++.|+..|+++++.+|..|+..|..+.            ..+.++.|+..|+++++.+|..|+..|..+....   
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---  683 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---  683 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc---
Confidence            4567788999999999999999999999987            4557788999999999999999999998885322   


Q ss_pred             hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                            ...+.|...|+++++.+|..++.+|..+....            ...|++.|+++++.+|..|+.+|..+..  
T Consensus       684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence                  12457788888899999999999888875322            3457788999999999999999997632  


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                                  .+.|..++.++++++|..++.+|..+.....         ..++ |..+++++++.+|..++.+|..+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        2456788999999999999999999866543         2367 88999999999999999999888


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW  357 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  357 (542)
                      ....          ..++.+...|.++++.+|..|+.+|+.+...           ..++.|..+|.++ +..||..|++
T Consensus       803 g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~-~~~VR~~A~~  860 (897)
T PRK13800        803 GCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPALVEALTDP-HLDVRKAAVL  860 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCC-CHHHHHHHHH
Confidence            6321          1224577889999999999999999977422           4568889999885 5699999999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy12594        358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNI  405 (542)
Q Consensus       358 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~n  405 (542)
                      +|+.+ .+++.         ..+.|...+.+.  +.+||..|..+|..
T Consensus       861 aL~~~-~~~~~---------a~~~L~~al~D~--d~~Vr~~A~~aL~~  896 (897)
T PRK13800        861 ALTRW-PGDPA---------ARDALTTALTDS--DADVRAYARRALAH  896 (897)
T ss_pred             HHhcc-CCCHH---------HHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence            99997 44444         356777888876  56999999999863

>KOG1222|consensus

Probab=99.69  E-value=7.4e-14  Score=131.85  Aligned_cols=373  Identities=14%  Similarity=0.112  Sum_probs=288.4

Q ss_pred             HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHH
Q psy12594         20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKH   99 (542)
Q Consensus        20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~   99 (542)
                      ++-.|.|++++...-..++..+++..|++.|..++.+........|.+|+  -..+++..+...|.+..|++++..+.++
T Consensus       283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS--If~eNK~~M~~~~iveKL~klfp~~h~d  360 (791)
T KOG1222|consen  283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLS--IFDENKIVMEQNGIVEKLLKLFPIQHPD  360 (791)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhh--hhccchHHHHhccHHHHHHHhcCCCCHH
Confidence            45678999999999999999999999999999888888888889999999  7788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC
Q psy12594        100 YKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP  179 (542)
Q Consensus       100 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~  179 (542)
                      ++...+..+.|++.......+++..|.+|.++.++.++...  ..|+..|..++. ++..+..+....+|+.+.+.+-+.
T Consensus       361 L~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~  437 (791)
T KOG1222|consen  361 LRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSG  437 (791)
T ss_pred             HHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999997775555599999999999999876532  346667777776 455577777788899988876543


Q ss_pred             -CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHH
Q psy12594        180 -QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVE  257 (542)
Q Consensus       180 -~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~  257 (542)
                       +.++-......-.|+|. +..+.+.+.+..++..|+..--.....+   ....+.|++.+....+..++.  -+. |..
T Consensus       438 ~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSqHeg~tqn~Fid--yvgdLa~  511 (791)
T KOG1222|consen  438 TGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQHEGATQNMFID--YVGDLAG  511 (791)
T ss_pred             CCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhhccchHHHHHHH--HHHHHHH
Confidence             45555555545568887 5566777777778888887654332222   345678889887666666664  455 777


Q ss_pred             hhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC--ccchHHHHHHHhHhhcCChHHHHHHHhhC
Q psy12594        258 HLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG--GYNSLPAIMALGYMSAQSEQIAEQIIELQ  334 (542)
Q Consensus       258 lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  334 (542)
                      .++.. ++.....+.+++.||...+.++.+.+.+...+|.+-..|...-  ..+....+-.+|..+. +......+..++
T Consensus       512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~  590 (791)
T KOG1222|consen  512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAK  590 (791)
T ss_pred             HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccc
Confidence            77766 6778889999999999888888888888999999999887743  3366666666776544 355666778889


Q ss_pred             chHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        335 GVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTALC-EENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       335 ~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      +++.|+++|+...+ ++......+....+..+ ...++.++ +...-..+++++.+.  +.++|+.+-.+|--+.
T Consensus       591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDk--N~eiRkVCDn~LdIia  662 (791)
T KOG1222|consen  591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDK--NAEIRKVCDNALDIIA  662 (791)
T ss_pred             cHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcc--cHHHHHHHHHHHHHHH
Confidence            99999999987643 56777788888888766 44455555 456667889999887  5689998888775544

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.66  E-value=2.8e-14  Score=156.18  Aligned_cols=275  Identities=19%  Similarity=0.141  Sum_probs=208.5

Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER  162 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (542)
                      ...++.|+..|.++++.+|..|+..|..+..          .++++.|+..|+++++.+|..|+.+|..+....+     
T Consensus       620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-----  684 (897)
T PRK13800        620 APSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-----  684 (897)
T ss_pred             chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence            4566788888999999999999998888752          2467888999998899999999988888753211     


Q ss_pred             HHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594        163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS  242 (542)
Q Consensus       163 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  242 (542)
                           ..+.|...|+++++.+|..++.+|..+...+            ...|+..|.++++.+|..++++|..+-.    
T Consensus       685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----  743 (897)
T PRK13800        685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD----  743 (897)
T ss_pred             -----chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC----
Confidence                 1356778888888999999998888875322            2456778889999999999999887521    


Q ss_pred             hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                                .+ |...+.++++.||..++.+|..+....+         ..++.|..+++++++.+|..|+.+|+.+..
T Consensus       744 ----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~  804 (897)
T PRK13800        744 ----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGC  804 (897)
T ss_pred             ----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence                      24 6677888899999999999888864322         235677888888898999999999988743


Q ss_pred             CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHH
Q psy12594        322 QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKN  401 (542)
Q Consensus       322 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~  401 (542)
                      ..          .....+...+.+ +++.+|..|+++|+.+.  +++         .++.|+.+|.++  +..||..|++
T Consensus       805 ~~----------~~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~--~~~---------a~~~L~~~L~D~--~~~VR~~A~~  860 (897)
T PRK13800        805 PP----------DDVAAATAALRA-SAWQVRQGAARALAGAA--ADV---------AVPALVEALTDP--HLDVRKAAVL  860 (897)
T ss_pred             cc----------hhHHHHHHHhcC-CChHHHHHHHHHHHhcc--ccc---------hHHHHHHHhcCC--CHHHHHHHHH
Confidence            21          123456677777 45689999999998873  222         458888999877  4689999999


Q ss_pred             HHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHH
Q psy12594        402 ALNILIPKCENPKELEQMLLGNVSEELLASILCAFA  437 (542)
Q Consensus       402 aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~  437 (542)
                      +|..+.......+.|...++ +.|.+|+..+..+|.
T Consensus       861 aL~~~~~~~~a~~~L~~al~-D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        861 ALTRWPGDPAARDALTTALT-DSDADVRAYARRALA  895 (897)
T ss_pred             HHhccCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence            99886322234678888888 889999998888875

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.65  E-value=1.3e-13  Score=144.49  Aligned_cols=410  Identities=17%  Similarity=0.180  Sum_probs=292.8

Q ss_pred             HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCH
Q psy12594         20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNK   98 (542)
Q Consensus        20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~   98 (542)
                      ..+.++....+.+..      .+.+..++++.+.+...+..+-.++..+.  .. ++....     .+..+.+-|.++++
T Consensus        27 l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~--~~~~~~~~l-----~~n~l~kdl~~~n~   93 (526)
T PF01602_consen   27 LKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYL--HEDPELLIL-----IINSLQKDLNSPNP   93 (526)
T ss_dssp             HHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHT--TTSHHHHHH-----HHHHHHHHHCSSSH
T ss_pred             HHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hcchhHHHH-----HHHHHHHhhcCCCH
Confidence            344444444444333      66778889999999999999999999998  55 442222     45677778889999


Q ss_pred             HHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC
Q psy12594         99 HYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS  178 (542)
Q Consensus        99 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~  178 (542)
                      .++..|+.++++++  .++...    .+++.+.+++.++++.+|..|+.++..+....|+..+.   . .++.+.+++.+
T Consensus        94 ~~~~lAL~~l~~i~--~~~~~~----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d  163 (526)
T PF01602_consen   94 YIRGLALRTLSNIR--TPEMAE----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSD  163 (526)
T ss_dssp             HHHHHHHHHHHHH---SHHHHH----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTH
T ss_pred             HHHHHHHhhhhhhc--ccchhh----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccC
Confidence            99999999999987  333333    24788899999999999999999999998766553222   2 48899999999


Q ss_pred             CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHH
Q psy12594        179 PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVE  257 (542)
Q Consensus       179 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~  257 (542)
                      +++.++..|+.++..+ ..+++....+. ...+..|.+++...++-.+..++.++..++...+.....   ..+++ +..
T Consensus       164 ~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~  238 (526)
T PF01602_consen  164 KDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLN  238 (526)
T ss_dssp             SSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHH
Confidence            9999999999999999 33333321222 334466666777889999999999999998876544421   46778 888


Q ss_pred             hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchH
Q psy12594        258 HLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVG  337 (542)
Q Consensus       258 lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  337 (542)
                      ++.+.++.+...++.++..+....+      .-..+++.|..++.+.++.++..++..|..++...+...    .  ...
T Consensus       239 ~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v----~--~~~  306 (526)
T PF01602_consen  239 LLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV----F--NQS  306 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH----G--THH
T ss_pred             HhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh----h--hhh
Confidence            8988899999999999998886444      124567899999999999999999999999987763222    1  222


Q ss_pred             HHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-----C
Q psy12594        338 SLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE-----N  412 (542)
Q Consensus       338 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~-----~  412 (542)
                      ..+..+...++..++..++..|..++  ++++...     +++.|...+.+.. +.+++.+++.+++.+..+..     .
T Consensus       307 ~~~~~l~~~~d~~Ir~~~l~lL~~l~--~~~n~~~-----Il~eL~~~l~~~~-d~~~~~~~i~~I~~la~~~~~~~~~~  378 (526)
T PF01602_consen  307 LILFFLLYDDDPSIRKKALDLLYKLA--NESNVKE-----ILDELLKYLSELS-DPDFRRELIKAIGDLAEKFPPDAEWY  378 (526)
T ss_dssp             HHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHGSSHHHH
T ss_pred             hhhheecCCCChhHHHHHHHHHhhcc--cccchhh-----HHHHHHHHHHhcc-chhhhhhHHHHHHHHHhccCchHHHH
Confidence            23445554456799999999999995  3444444     4567777774332 46899999999999976532     3


Q ss_pred             chhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcCCCCcHH-HHHHHHhccCc
Q psy12594        413 PKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIA-PHLKTINACFP  480 (542)
Q Consensus       413 i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~~~~~~~-~a~~~l~~~~~  480 (542)
                      ++.+..++. ...+.+...+...+.+++...+..+...... .++.+.++ ..+++. .++++++.|..
T Consensus       379 v~~l~~ll~-~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~-L~~~l~~~-~~~~~~~~~~wilGEy~~  444 (526)
T PF01602_consen  379 VDTLLKLLE-ISGDYVSNEIINVIRDLLSNNPELREKILKK-LIELLEDI-SSPEALAAAIWILGEYGE  444 (526)
T ss_dssp             HHHHHHHHH-CTGGGCHCHHHHHHHHHHHHSTTTHHHHHHH-HHHHHTSS-SSHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHhhh-hccccccchHHHHHHHHhhcChhhhHHHHHH-HHHHHHHh-hHHHHHHHHHhhhcccCC
Confidence            678888888 7777788888888888877766654443222 12222222 333343 48888888865

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2122|consensus

Probab=99.63  E-value=2.5e-14  Score=150.14  Aligned_cols=310  Identities=16%  Similarity=0.121  Sum_probs=245.2

Q ss_pred             HHHHHHHHHHHHHHhcCC-CCchHHHHhCCchHHH----------HhhhcCCCh-------HHHH-HHHHHHHHhHccCC
Q psy12594         13 YQRARLCFVQTMSAFADK-PSTIHFLKDLNVVDLI----------VPLLADKVP-------SIQH-AALATLGKLMCAKH   73 (542)
Q Consensus        13 ~~~~r~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L----------~~lL~s~~~-------~v~~-~a~~~L~~l~~~~~   73 (542)
                      .+.+|+.+-++|.|+-.. ++....=++..++++|          +.++.+.++       .-+. .|+.+|.+++  .+
T Consensus       251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S--FD  328 (2195)
T KOG2122|consen  251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS--FD  328 (2195)
T ss_pred             hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh--cc
Confidence            556788999999999883 3322222222333332          334443222       2233 7888999999  99


Q ss_pred             hHHHHHHHhcCcHHHHHHhhcc------------CCHHHHHHHHHHHHHHhcCChhhhh-H-hhcCChHHHHhhhcCCCH
Q psy12594         74 VDIRQEVLERNLVALVLKDLTK------------QNKHYKKTALHMLTCVAQQDERCAG-L-IEDKDLDSIISSLHDFDP  139 (542)
Q Consensus        74 ~~~~~~i~~~~~l~~Lv~~L~~------------~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~g~v~~Lv~lL~~~~~  139 (542)
                      ++.+..|-+.|+++.+-.++.-            .+..+|+++..+|.||..++...+. + -..|+++.+|..|.+...
T Consensus       329 EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe  408 (2195)
T KOG2122|consen  329 EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE  408 (2195)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH
Confidence            9999999999999988886531            2357899999999999988877666 4 466999999999998888


Q ss_pred             HHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh-CCChHHHHH
Q psy12594        140 DTRANAALALGGLAKDNKH-FAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSPELAESASD-CDVIPLLIK  216 (542)
Q Consensus       140 ~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~  216 (542)
                      ++....+.+|.||++.-+. .++.+-+.|-+..|.... +..........+.+|+||+.|..+++..|.. .|++..|+.
T Consensus       409 eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg  488 (2195)
T KOG2122|consen  409 ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVG  488 (2195)
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHh
Confidence            8888888999999965544 445555668888887764 4445567788999999999998888776653 678999999


Q ss_pred             hhcCC----CHHHHHHHHHHHHHHhcC---ChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594        217 ALNND----EVNVKADAFLCLADIAKD---SPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV  288 (542)
Q Consensus       217 ll~~~----~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  288 (542)
                      +|.-.    ...+.+.+-.+|.|++..   .+++++.+..+..+. |+.+|++.+-.+..++|++||||+..+++..+.+
T Consensus       489 ~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~L  568 (2195)
T KOG2122|consen  489 TLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQML  568 (2195)
T ss_pred             hccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHH
Confidence            99733    466889999999888753   346788889999999 9999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh
Q psy12594        289 VLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE  324 (542)
Q Consensus       289 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  324 (542)
                      .+.|+++.|..++++.+..+..-+..+|.||....+
T Consensus       569 wD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  569 WDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             HhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            999999999999999999999999999999987654

>PTZ00429 beta-adaptin; Provisional

Probab=99.62  E-value=5.6e-12  Score=132.17  Aligned_cols=385  Identities=16%  Similarity=0.125  Sum_probs=269.7

Q ss_pred             hcCCCCchHHHH--hCCchHHHHhhhcCCChHHHHHHHH-HHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHH
Q psy12594         27 FADKPSTIHFLK--DLNVVDLIVPLLADKVPSIQHAALA-TLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKT  103 (542)
Q Consensus        27 l~~~~~~~~~l~--~~g~i~~L~~lL~s~~~~v~~~a~~-~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~  103 (542)
                      +-..+.....|.  ..|=+.-|.+.|.+.+...+..|++ .+..++  ...+.      ..+++.+++++.+.+..+|+.
T Consensus        16 ~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt--~G~Dv------S~LF~dVvk~~~S~d~elKKL   87 (746)
T PTZ00429         16 LEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMT--MGRDV------SYLFVDVVKLAPSTDLELKKL   87 (746)
T ss_pred             hhcCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCCc------hHHHHHHHHHhCCCCHHHHHH
Confidence            334444555554  3566777888888888777777764 555555  33222      236778888999999999999


Q ss_pred             HHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhH
Q psy12594        104 ALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSL  183 (542)
Q Consensus       104 a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~  183 (542)
                      ....+.+++...++...+    ++..+.+-+++++|.+|..|+++|+++-.  +...+.+     ++.+.+.+.+.++.|
T Consensus        88 vYLYL~~ya~~~pelalL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l-----~~~lkk~L~D~~pYV  156 (746)
T PTZ00429         88 VYLYVLSTARLQPEKALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYT-----LEPLRRAVADPDPYV  156 (746)
T ss_pred             HHHHHHHHcccChHHHHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHH-----HHHHHHHhcCCCHHH
Confidence            999999998766654331    46788899999999999999999998864  3333332     667888899999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC
Q psy12594        184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP  262 (542)
Q Consensus       184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~  262 (542)
                      |..|+.++.++...+++   .+.+.+.++.|..++.+.++.+..+|+.+|..+...++...  -.....+. |+..+.+.
T Consensus       157 RKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~  231 (746)
T PTZ00429        157 RKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPEC  231 (746)
T ss_pred             HHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcC
Confidence            99999999999886664   23346788999999999999999999999999987765322  23345567 88888888


Q ss_pred             ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC-hHHHHHHHhhCchHHHHH
Q psy12594        263 HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS-EQIAEQIIELQGVGSLQT  341 (542)
Q Consensus       263 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~  341 (542)
                      +++.+...+.+|......+....     ...+..+...|++.++.|...|++++.++.... ++....... .+.+.++.
T Consensus       232 ~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~  305 (746)
T PTZ00429        232 NEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLT  305 (746)
T ss_pred             ChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHH
Confidence            99999988888865433222222     245678888899999999999999999887542 332222221 23455666


Q ss_pred             hhcCCChhhHHHHHHHHHHHhhcCChHHHHH-------------------------HHHcCChHHHHHHHhc--CCCChH
Q psy12594        342 ILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA-------------------------LCEENVLSTLLSKITQ--TCVSDN  394 (542)
Q Consensus       342 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------------------------l~~~~~l~~L~~ll~~--~~~~~~  394 (542)
                      ++.+  +++++..+++.+.-+....|.....                         +.+..-+..++.-|..  .+.+.+
T Consensus       306 L~ss--~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~e  383 (746)
T PTZ00429        306 LSRR--DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMV  383 (746)
T ss_pred             hhCC--CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHH
Confidence            6543  3478888887776665544432211                         1222233333333332  122568


Q ss_pred             HHHHHHHHHHHHHhhC-----CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594        395 LKSKCKNALNILIPKC-----ENPKELEQMLLGNVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       395 v~~~a~~aL~nl~~~~-----~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                      +++++..+++++..+.     ..+..|++++. .+.. ++..++.++.++++++|+
T Consensus       384 f~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~-~~~~-~v~e~i~vik~IlrkyP~  437 (746)
T PTZ00429        384 FVVEVVRAIASLAIKVDSVAPDCANLLLQIVD-RRPE-LLPQVVTAAKDIVRKYPE  437 (746)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHhc-CCch-hHHHHHHHHHHHHHHCcc
Confidence            9999999999997653     23677888887 5544 455788899999888775

>KOG1222|consensus

Probab=99.62  E-value=2.1e-12  Score=122.22  Aligned_cols=372  Identities=16%  Similarity=0.174  Sum_probs=276.3

Q ss_pred             HHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCC
Q psy12594         59 HAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD  138 (542)
Q Consensus        59 ~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~  138 (542)
                      ..|+..|.+++  ++...-..++....+.-||+.|..++.++......+|..++-..+....+.+.|.++.|++++...+
T Consensus       281 rva~ylLlNlA--ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h  358 (791)
T KOG1222|consen  281 RVAVYLLLNLA--EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH  358 (791)
T ss_pred             HHHHHHHHHHh--hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence            45677888999  8766667788889999999999999999999999999999987755555888999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh
Q psy12594        139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL  218 (542)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll  218 (542)
                      ++++...+..+.|++.+ ...+..++..|.+|.+..++.++..  ...|+..+..++. +.+....+.....++.+.+.+
T Consensus       359 ~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v  434 (791)
T KOG1222|consen  359 PDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDV  434 (791)
T ss_pred             HHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999984 4668999999999999999997652  3346667778877 445566666678888888766


Q ss_pred             cC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHH
Q psy12594        219 NN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLD  295 (542)
Q Consensus       219 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~  295 (542)
                      -. .+.++--..+....|+|-+. ...+.+.+..++. |+..--.. |+-+    ...++|++.|.......+++  .+.
T Consensus       435 ~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvg  507 (791)
T KOG1222|consen  435 LSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVG  507 (791)
T ss_pred             HhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHH
Confidence            53 35555555555556888765 3667777777777 77654433 5433    35678888887554444433  344


Q ss_pred             HHHHhhhcCC-ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHH
Q psy12594        296 GLLRLIDCNG-GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTAL  373 (542)
Q Consensus       296 ~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l  373 (542)
                      .|...++..+ ......++.+++||.-.+-+..+.+.+.+.+|.+...|..+-+ +++.....-++|.+ +........+
T Consensus       508 dLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~-a~d~~cA~Ll  586 (791)
T KOG1222|consen  508 DLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTM-ARDLDCARLL  586 (791)
T ss_pred             HHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhh-hhhhHHHHHh
Confidence            5555555544 3466778888888888778888888899999999999987654 56777777778887 4555666677


Q ss_pred             HHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594        374 CEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCD  443 (542)
Q Consensus       374 ~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~  443 (542)
                      ..+++++.++++|+....++++-....+....++.          ....-..|++|.. +.+.++++.+=.+|--+...+
T Consensus       587 a~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMH-DkN~eiRkVCDn~LdIiae~d  665 (791)
T KOG1222|consen  587 APAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMH-DKNAEIRKVCDNALDIIAEHD  665 (791)
T ss_pred             CccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHh-cccHHHHHHHHHHHHHHHHhh
Confidence            78899999999999876556666666666655532          2233456889998 888888777666666554445


Q ss_pred             hh
Q psy12594        444 PV  445 (542)
Q Consensus       444 ~~  445 (542)
                      ..
T Consensus       666 ~E  667 (791)
T KOG1222|consen  666 KE  667 (791)
T ss_pred             HH
Confidence            43

>KOG0168|consensus

Probab=99.61  E-value=2.8e-13  Score=136.04  Aligned_cols=258  Identities=16%  Similarity=0.176  Sum_probs=208.8

Q ss_pred             hHHHHhhhcCC-ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         43 VDLIVPLLADK-VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        43 i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      +..|+.-|+.+ |+..|..|+.-|+.+.+-.+++....+--..++|.|+.+|++ .+.++...|+++|.+|+.--|.-..
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            44455555554 899999999888887754556665566666789999999997 5699999999999999988777777


Q ss_pred             -HhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        121 -LIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       121 -~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                       +++.++||.|+.-|..- --++-++++.+|..|++..   -+.+++.|++...+.++.--....|+.|+.+..|+|..-
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI  325 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             89999999999877654 4789999999999999744   367899999999999998778899999999999999843


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc---CChhhHHHHHhhchHH-HHHhhcCC----ChhHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK---DSPSLASTIADGATTL-AVEHLTYP----HGLVQKNA  270 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~-L~~lL~~~----~~~v~~~a  270 (542)
                      +.-....+ ...+|.|..+|+..|....+.++-++..++.   +.++..+.+...+.+. ..+++.-.    +..+....
T Consensus       326 ~sd~f~~v-~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  326 RSDEFHFV-MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CCccchHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            22222233 4678999999999999999999999999976   4555667778889998 88888765    45677788


Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC
Q psy12594        271 ATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN  304 (542)
Q Consensus       271 ~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~  304 (542)
                      +..|..++.+.|.....+.+.++...|..++.+.
T Consensus       405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence            8999999999898888888888888888887653

>KOG1293|consensus

Probab=99.58  E-value=1.6e-12  Score=127.86  Aligned_cols=425  Identities=12%  Similarity=0.059  Sum_probs=278.6

Q ss_pred             HHHHHHHhcC-CCCchHHHHhCCchHHHHhhhcCCCh--HHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc
Q psy12594         20 FVQTMSAFAD-KPSTIHFLKDLNVVDLIVPLLADKVP--SIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK   95 (542)
Q Consensus        20 ~~~~l~~l~~-~~~~~~~l~~~g~i~~L~~lL~s~~~--~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~   95 (542)
                      ++....++.- ++...+.+.+.|.++.|+.++..+++  ..+...+..+..++  .. .+....+.+...++.++++|+.
T Consensus        29 ai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f--~~eqd~v~svL~~~~ll~Ll~LLs~  106 (678)
T KOG1293|consen   29 AIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLF--LGEQDKVDSVLRIIELLKLLQLLSE  106 (678)
T ss_pred             HHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHH--hhccchHHHHHHHhhHHHHHHHhcC
Confidence            3444444444 66677789999999999999987664  55556777788887  44 6677788899999999999998


Q ss_pred             CC-HHHHHHHHHHHHHHhcCChhhhh---HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q psy12594         96 QN-KHYKKTALHMLTCVAQQDERCAG---LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP  171 (542)
Q Consensus        96 ~~-~~~~~~a~~~L~~l~~~~~~~~~---~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  171 (542)
                      .+ ..++...+.+++.+...++....   ......++.+..++..+.......-+....+++. .+..+....+.|+.+.
T Consensus       107 sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~-~~~hq~Il~Na~i~ek  185 (678)
T KOG1293|consen  107 SDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSS-TKDHQLILCNAGILEK  185 (678)
T ss_pred             cchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccc-cchhhheeccccchhh
Confidence            88 78888899999999877654444   2333455555555542332222223333334443 4565667777888777


Q ss_pred             HHHhccCCCHhHHHHHHHHHH---HHhcCCHHHHHH----hhhCCChH--HHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594        172 LVQILASPQLSLKHAAAFALD---GIVKHSPELAES----ASDCDVIP--LLIKALNNDEVNVKADAFLCLADIAKDSPS  242 (542)
Q Consensus       172 L~~ll~~~~~~~~~~a~~~L~---nl~~~~~~~~~~----~~~~~~i~--~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  242 (542)
                      +.-++...+..+|.+|+.+++   ++...++.....    ..+.|+.+  .+.+++++++...+-.++.++.++.+.+.+
T Consensus       186 I~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~  265 (678)
T KOG1293|consen  186 INILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFN  265 (678)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcccc
Confidence            777777767889999999999   887767665544    34566666  566778888888888888888888765511


Q ss_pred             hH-----HHHHhhc-------------------------hHH--HHHhh---cCC--ChhHHH---HHHHHHHHHhcCCh
Q psy12594        243 LA-----STIADGA-------------------------TTL--AVEHL---TYP--HGLVQK---NAATLLRDMCKHNL  282 (542)
Q Consensus       243 ~~-----~~~~~~~-------------------------~i~--L~~lL---~~~--~~~v~~---~a~~~L~~L~~~~~  282 (542)
                      ..     ..+...|                         ++.  +..+.   +..  ...+..   ..+.+-+.+....+
T Consensus       266 ~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~  345 (678)
T KOG1293|consen  266 YDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDE  345 (678)
T ss_pred             ccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcch
Confidence            00     0001110                         011  00011   111  111111   11122222222223


Q ss_pred             HHHHHHHhc----------------------CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHH
Q psy12594        283 RLANLVVLA----------------------GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQ  340 (542)
Q Consensus       283 ~~~~~~~~~----------------------~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  340 (542)
                      .....+.+.                      .+...+.......+...+.+|+.++.+++..-......+-..++..+|+
T Consensus       346 ~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plv  425 (678)
T KOG1293|consen  346 KYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLV  425 (678)
T ss_pred             hhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence            222221111                      1122222222334555777788788777665444444455668899999


Q ss_pred             HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC--------
Q psy12594        341 TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN--------  412 (542)
Q Consensus       341 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~--------  412 (542)
                      +++.. ++..++..++.+|.|++-.....+..++..|++..+...+.+.+  +.+|..+.|+|.++.-.++.        
T Consensus       426 qll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~--~n~r~~~~~~Lr~l~f~~de~~k~~~~~  502 (678)
T KOG1293|consen  426 QLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPD--FNSRANSLWVLRHLMFNCDEEEKFQLLA  502 (678)
T ss_pred             HHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCC--chHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            99976 45689999999999999888888999999999999999999874  58999999999999754321        


Q ss_pred             ---chhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHH
Q psy12594        413 ---PKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFV  451 (542)
Q Consensus       413 ---i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~  451 (542)
                         -..+..+.+ +.|+.|...++..+.|+++...+.-..+.
T Consensus       503 ki~a~~i~~l~n-d~d~~Vqeq~fqllRNl~c~~~~svdfll  543 (678)
T KOG1293|consen  503 KIPANLILDLIN-DPDWAVQEQCFQLLRNLTCNSRKSVDFLL  543 (678)
T ss_pred             HhhHHHHHHHHh-CCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence               234555666 88999999999999999998655544443

>KOG1061|consensus

Probab=99.58  E-value=2.1e-13  Score=136.88  Aligned_cols=407  Identities=17%  Similarity=0.184  Sum_probs=287.1

Q ss_pred             CCchHHHHhhhcCCChHHHHHHH-HHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAAL-ATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~-~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      .|.++.+.+-+.+..+.-|..|+ +++..+.  ...+.      +..++.+++++...+-+.++.+-..+.+.+...++.
T Consensus        12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt--~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~   83 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMT--VGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL   83 (734)
T ss_pred             hhhchHHHHHhhhhhhhhHHHHHHHHHhcCc--cCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH
Confidence            45666666666655555555555 5666666  44333      457888999999889999999999999999887766


Q ss_pred             hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                      ..    +++..++.-..++++.+|..|++.++.+-.  +...+.+     ..++.+.+++.++.+|..++.+..++-..+
T Consensus        84 a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~ey~-----~~Pl~~~l~d~~~yvRktaa~~vakl~~~~  152 (734)
T KOG1061|consen   84 AI----LAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKITEYL-----CDPLLKCLKDDDPYVRKTAAVCVAKLFDID  152 (734)
T ss_pred             HH----hhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHHHHH-----HHHHHHhccCCChhHHHHHHHHHHHhhcCC
Confidence            55    678888898999999999999888777654  2222332     678999999999999999999999988754


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                      +   +.+.+.|.++.|..++.+.++.+...|+.+|..+...+++.-........+. ++..+...+++-+.....++.+-
T Consensus       153 ~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y  229 (734)
T KOG1061|consen  153 P---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEY  229 (734)
T ss_pred             h---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence            4   4555689999999999999999999999999999887654222333345556 77777777888888888877777


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW  357 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  357 (542)
                      ...++...+     ..+.++...|.+.+..+...+...+.++...-+.....+. ...-+.|+.++...+  +++..+++
T Consensus       230 ~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~--e~qyvaLr  301 (734)
T KOG1061|consen  230 VPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES--EIQYVALR  301 (734)
T ss_pred             CCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc--hhhHHHHh
Confidence            655553333     3455888899999999999999988888765444333333 367778888887754  67766666


Q ss_pred             HHHHhhcCChHHHHH-------------------------HHHcCChHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhh-
Q psy12594        358 TLGQIGKHSVDNVTA-------------------------LCEENVLSTLLSKITQTCV--SDNLKSKCKNALNILIPK-  409 (542)
Q Consensus       358 ~L~~l~~~~~~~~~~-------------------------l~~~~~l~~L~~ll~~~~~--~~~v~~~a~~aL~nl~~~-  409 (542)
                      -+.-+....|+....                         +.....++.++.-+....+  +.+.-+++.+|++++..+ 
T Consensus       302 Ni~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~  381 (734)
T KOG1061|consen  302 NINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA  381 (734)
T ss_pred             hHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh
Confidence            665554444432211                         1122233334444443322  345557899999999644 


Q ss_pred             ---CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcCCCCcHHH-HHHHHhccC
Q psy12594        410 ---CENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAP-HLKTINACF  479 (542)
Q Consensus       410 ---~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~~~~~~~~-a~~~l~~~~  479 (542)
                         .+.+..|.++++ .+-..++++++..+..++++.|+..+.++...+ ..+..+ .+++.+. .+|+++.|.
T Consensus       382 e~~~~cv~~lLell~-~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~-~~~~sl-~epeak~amiWilg~y~  452 (734)
T KOG1061|consen  382 EQSNDCVSILLELLE-TKVDYVVQEAIVVIRDILRKYPNKYESVVAILC-ENLDSL-QEPEAKAALIWILGEYA  452 (734)
T ss_pred             hhhhhhHHHHHHHHh-hcccceeeehhHHHHhhhhcCCCchhhhhhhhc-cccccc-CChHHHHHHHHHHhhhh
Confidence               245888999998 888899999999999999999987665554321 122222 4555654 456776664

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.57  E-value=1.4e-12  Score=136.68  Aligned_cols=382  Identities=20%  Similarity=0.216  Sum_probs=271.8

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhc
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLT   94 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~   94 (542)
                      .|..+++++.++.. ++..+     ..++.+.+++.+++|.+|..|+.++.++.  .. ++..   ... +++.+.++|.
T Consensus        95 ~~~lAL~~l~~i~~-~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~--~~~p~~~---~~~-~~~~l~~lL~  162 (526)
T PF01602_consen   95 IRGLALRTLSNIRT-PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIY--RKDPDLV---EDE-LIPKLKQLLS  162 (526)
T ss_dssp             HHHHHHHHHHHH-S-HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHH--HHCHCCH---HGG-HHHHHHHHTT
T ss_pred             HHHHHHhhhhhhcc-cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHh--ccCHHHH---HHH-HHHHHhhhcc
Confidence            46677788887773 33332     34677889999999999999999999998  33 3321   122 5888999999


Q ss_pred             cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q psy12594         95 KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ  174 (542)
Q Consensus        95 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  174 (542)
                      +.++.++..|+.++..+ ..++....-.-...++.|.+++...+|..+...+..|..++...+.....   ..+++.+..
T Consensus       163 d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~  238 (526)
T PF01602_consen  163 DKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLN  238 (526)
T ss_dssp             HSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHH
Confidence            89999999999999999 33332211111234566666677889999999999999998766665422   344788888


Q ss_pred             hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594        175 ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL  254 (542)
Q Consensus       175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  254 (542)
                      ++++.++.+...++.++..+.. .+...     ..+++.|..++.++++.++..++..|..++...+   ..+.  ....
T Consensus       239 ~l~s~~~~V~~e~~~~i~~l~~-~~~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~---~~v~--~~~~  307 (526)
T PF01602_consen  239 LLQSSSPSVVYEAIRLIIKLSP-SPELL-----QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP---PAVF--NQSL  307 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSS-SHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH---HHHG--THHH
T ss_pred             HhhccccHHHHHHHHHHHHhhc-chHHH-----HhhHHHHHHHhhcccchhehhHHHHHHHhhcccc---hhhh--hhhh
Confidence            8888889999999999998887 34322     3456899999999999999999999999988762   1121  2222


Q ss_pred             HHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHHhHhhcCChHHHHHHHh
Q psy12594        255 AVEHLT-YPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMALGYMSAQSEQIAEQIIE  332 (542)
Q Consensus       255 L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  332 (542)
                      .+..+. ++|..++..++..|..++.  +.+...     +++.|..++. ..++.++..++..++.++...+....    
T Consensus       308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~----  376 (526)
T PF01602_consen  308 ILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAE----  376 (526)
T ss_dssp             HHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHH----
T ss_pred             hhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHH----
Confidence            333444 7799999999999999984  333332     4668888884 44777999999999998865433332    


Q ss_pred             hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy12594        333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN  412 (542)
Q Consensus       333 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~  412 (542)
                       ..++.+++++.... +.+...+...+.++....++....     .+..+++.+.+-. +++++..++|.++......+.
T Consensus       377 -~~v~~l~~ll~~~~-~~~~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~-~~~~~~~~~wilGEy~~~~~~  448 (526)
T PF01602_consen  377 -WYVDTLLKLLEISG-DYVSNEIINVIRDLLSNNPELREK-----ILKKLIELLEDIS-SPEALAAAIWILGEYGELIEN  448 (526)
T ss_dssp             -HHHHHHHHHHHCTG-GGCHCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSS-SHHHHHHHHHHHHHHCHHHTT
T ss_pred             -HHHHHHHHhhhhcc-ccccchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhh-HHHHHHHHHhhhcccCCcccc
Confidence             35677888888744 477888888888887766664433     3677888888743 678999999999999766544


Q ss_pred             ---chhhHH----hhcCCCCHHHHHHHHHHHHhhCCCCh
Q psy12594        413 ---PKELEQ----MLLGNVSEELLASILCAFAKILPCDP  444 (542)
Q Consensus       413 ---i~~L~~----lL~~~~~~~v~~~~l~~l~~ll~~~~  444 (542)
                         .+.+.+    .+. ..++.+...++.++.++....+
T Consensus       449 ~~~~~~~~~~l~~~~~-~~~~~vk~~ilt~~~Kl~~~~~  486 (526)
T PF01602_consen  449 TESAPDILRSLIENFI-EESPEVKLQILTALAKLFKRNP  486 (526)
T ss_dssp             TTHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccHHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhCC
Confidence               333333    333 5566788888888888766554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171|consensus

Probab=99.56  E-value=8.7e-12  Score=130.45  Aligned_cols=392  Identities=15%  Similarity=0.114  Sum_probs=268.3

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhh
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDL   93 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L   93 (542)
                      .|.+..+.+++++++.---   .=.+.++.|..-.+|.++..|..|+.+|..+.  ..  ......+.  .+.+.+.+.+
T Consensus        96 vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~--~~~~~~~~~~~~--~l~~lf~q~~  168 (1075)
T KOG2171|consen   96 VRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLP--ETFGNTLQPHLD--DLLRLFSQTM  168 (1075)
T ss_pred             HHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhh--hhhccccchhHH--HHHHHHHHhc
Confidence            4777778888888743222   11456777777788999999999999999999  44  22222221  2445556667


Q ss_pred             ccCCHHHHHHHHHHHHHHhcCChhhhh-H-hhcCChHHHH----hhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594         94 TKQNKHYKKTALHMLTCVAQQDERCAG-L-IEDKDLDSII----SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG  167 (542)
Q Consensus        94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~g~v~~Lv----~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g  167 (542)
                      .+++..+|..+++++..++...+.... . .-...+|.++    ..++.+|.+.-..+..+|..++...+.+....+.. 
T Consensus       169 ~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-  247 (1075)
T KOG2171|consen  169 TDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-  247 (1075)
T ss_pred             cCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-
Confidence            776666999999999998754421111 1 1113455444    44556677777888999999987777655544432 


Q ss_pred             ChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHHHhh--hCCChHHHHHhhcCC--C--------------HHHHH
Q psy12594        168 ALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAESAS--DCDVIPLLIKALNND--E--------------VNVKA  227 (542)
Q Consensus       168 ~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~--~~~~i~~L~~ll~~~--~--------------~~~~~  227 (542)
                      ++...++..++.  +..+|..|+.+|..+++..|..++..-  -...++.++.++.+.  |              ..--.
T Consensus       248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~  327 (1075)
T KOG2171|consen  248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR  327 (1075)
T ss_pred             HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence            355556666654  488999999999999986554444322  233456666666421  1              11345


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc
Q psy12594        228 DAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG  306 (542)
Q Consensus       228 ~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~  306 (542)
                      .|..+|-.++.+-+.   ..+-..+++ +-.++.+.+..-|..++.+|+.++.+.++...... ..+++.++..|.++++
T Consensus       328 ~A~~~lDrlA~~L~g---~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphp  403 (1075)
T KOG2171|consen  328 AAEQALDRLALHLGG---KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHP  403 (1075)
T ss_pred             HHHHHHHHHHhcCCh---hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCH
Confidence            677778777765431   112234566 77888999999999999999999998877665433 4788999999999999


Q ss_pred             cchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHH
Q psy12594        307 YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN-VTALCEENVLSTLLSK  385 (542)
Q Consensus       307 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~l~~L~~l  385 (542)
                      .||.+|+.++|.++..-....+......+.+.|+..+.+.....++..|+.++-|+....+.. ....+ .+++..++..
T Consensus       404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~  482 (1075)
T KOG2171|consen  404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLL  482 (1075)
T ss_pred             HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHH
Confidence            999999999999988655555555666788899999998777889999999999997655432 22222 2455544445


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHhhCC---------CchhhHHhhc
Q psy12594        386 ITQTCVSDNLKSKCKNALNILIPKCE---------NPKELEQMLL  421 (542)
Q Consensus       386 l~~~~~~~~v~~~a~~aL~nl~~~~~---------~i~~L~~lL~  421 (542)
                      |..+. ...+|+.++.+|+.....++         .+|.|...|+
T Consensus       483 L~~~~-~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~  526 (1075)
T KOG2171|consen  483 LLQSS-KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ  526 (1075)
T ss_pred             HhcCC-chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
Confidence            55443 57999999999999976543         1456666666

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=2e-12  Score=118.41  Aligned_cols=194  Identities=15%  Similarity=0.208  Sum_probs=163.5

Q ss_pred             HhCCchHHHHhhhc-CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh
Q psy12594         38 KDLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE  116 (542)
Q Consensus        38 ~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~  116 (542)
                      .+++-++.|+.+|+ +.||.++..|..++++.+  ..+.+++.+.+.|+++.+..+|..+++.++..|+.+|.+++...+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a--af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSA--AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc--cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            56677888999998 568999999999999999  889999999999999999999999999999999999999987764


Q ss_pred             hhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594        117 RCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI  194 (542)
Q Consensus       117 ~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl  194 (542)
                      ....+ +. .++.+++...+.  +..++..++++|.+++..+ .....+.  +.++.++.++.+++...+..++++|.||
T Consensus        87 n~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            44443 22 455555544333  6889999999999998643 3344443  3599999999999999999999999999


Q ss_pred             hcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC
Q psy12594        195 VKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKD  239 (542)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~  239 (542)
                      +. +|...+.++..++++.|+.++... +.++...+++.+.||..+
T Consensus       162 S~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            99 788888888899999999999865 788899999999999653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.50  E-value=3.9e-12  Score=116.49  Aligned_cols=194  Identities=18%  Similarity=0.230  Sum_probs=160.9

Q ss_pred             HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594        121 LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP  199 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~  199 (542)
                      +.+.+-++.|+.+|+. .||.+++.+..++++.+. .+..++.+.+.|+++.+..++.++++.++..|+++|.|++. +.
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~   85 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-ND   85 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-Ch
Confidence            4556778999999985 579999999999999866 67789999999999999999999999999999999999998 55


Q ss_pred             HHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        200 ELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       200 ~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                      ++...+-  ..++.+++.+.+.  +.+++..++.+|.+|+... +.+..+.  ..++ ++++|..++..++..++++|.|
T Consensus        86 en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   86 ENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN  160 (254)
T ss_pred             hhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5665543  2466666654433  7789999999999998775 3555554  4688 9999999999999999999999


Q ss_pred             HhcCChHHHHHHHhcCCHHHHHHhhhcC-CccchHHHHHHHhHhhcC
Q psy12594        277 MCKHNLRLANLVVLAGGLDGLLRLIDCN-GGYNSLPAIMALGYMSAQ  322 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~  322 (542)
                      |+. +|...+.+...++.+.++.++... +.++...++..+.||..+
T Consensus       161 LS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  161 LSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             hcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            994 566666688889999999999886 556888999999999653

>KOG1293|consensus

Probab=99.50  E-value=4.5e-12  Score=124.75  Aligned_cols=388  Identities=11%  Similarity=0.080  Sum_probs=256.4

Q ss_pred             HHHHHHHHHhcC-CCCchHHHHhCCchHHHHhhhcCCC-hHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhc
Q psy12594         18 LCFVQTMSAFAD-KPSTIHFLKDLNVVDLIVPLLADKV-PSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLT   94 (542)
Q Consensus        18 ~~~~~~l~~l~~-~~~~~~~l~~~g~i~~L~~lL~s~~-~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~   94 (542)
                      ..+...+..+.. .+.....+.+.+.++.|..++.+.| ..++...+..++.+.+... .+..........++.+..++.
T Consensus        71 ~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s  150 (678)
T KOG1293|consen   71 NGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS  150 (678)
T ss_pred             hhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh
Confidence            344555554444 5667788889999999999999888 7889999999999993332 222233333445555555555


Q ss_pred             cCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHH---HhhcCChHHHHH----HHHc
Q psy12594         95 KQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALG---GLAKDNKHFAER----IVQC  166 (542)
Q Consensus        95 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~---~l~~~~~~~~~~----i~~~  166 (542)
                      .+.......-+....+++... +++. ....|+.+.+.-++.......|..|..++.   ++...++.....    ..+.
T Consensus       151 ~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~  229 (678)
T KOG1293|consen  151 IELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDK  229 (678)
T ss_pred             hhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhcc
Confidence            344444455444444555444 6666 778899988888888778899999999999   777766654443    3445


Q ss_pred             CChH--HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH----H-HhhhCC----------------Ch-----H-----H
Q psy12594        167 GALP--PLVQILASPQLSLKHAAAFALDGIVKHSPELA----E-SASDCD----------------VI-----P-----L  213 (542)
Q Consensus       167 g~i~--~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~----~-~~~~~~----------------~i-----~-----~  213 (542)
                      |+.+  .+.+++++++.+.+..++.++.++...+....    . ...+.|                ++     .     .
T Consensus       230 ~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~  309 (678)
T KOG1293|consen  230 GVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCI  309 (678)
T ss_pred             ccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHH
Confidence            6666  67788899988888999999998877441100    0 111111                00     0     0


Q ss_pred             HHHhhc---CC-----CHHHHHHHHHHHHHHhcCChhhHHHH----------------------HhhchHH-HHHhhcCC
Q psy12594        214 LIKALN---ND-----EVNVKADAFLCLADIAKDSPSLASTI----------------------ADGATTL-AVEHLTYP  262 (542)
Q Consensus       214 L~~ll~---~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~----------------------~~~~~i~-L~~lL~~~  262 (542)
                      +....+   ..     ..+.......+-+.++...+..+...                      .+..... +.......
T Consensus       310 ~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k  389 (678)
T KOG1293|consen  310 LARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK  389 (678)
T ss_pred             HHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc
Confidence            011111   00     01111112222233333333322222                      2222222 22222334


Q ss_pred             ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594        263 HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI  342 (542)
Q Consensus       263 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  342 (542)
                      |.+.+..++.++.++++.-.....-+....++++|++++..++..+...++.+|.|++..-......++..|+++.+..+
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~  469 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM  469 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence            78889999999998886543333334456789999999999999999999999999998878888899999999999999


Q ss_pred             hcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHH-HHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        343 LQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLST-LLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       343 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~-L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      +.+. +..++..+.|+|.++.-+.++..+......+... +..+..++  +..|++.+...|.|+.-+
T Consensus       470 ~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  470 LTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhcC
Confidence            9985 5689999999999999888776666655555444 44555555  569999999999999643

>KOG2023|consensus

Probab=99.49  E-value=4.8e-12  Score=124.20  Aligned_cols=349  Identities=14%  Similarity=0.120  Sum_probs=224.1

Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh--Hhhc---CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG--LIED---KDLDSIISSLHDFDPDTRANAALALGGLAKDNK  157 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~---g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  157 (542)
                      ..++|.|..+|.+++.....-|..+|.+++.++.+.-.  +...   -.+|.++++.++++|.+|..|+.|+-.+.-..+
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence            45788999999998888999999999999987655433  2211   368999999999999999999999887663222


Q ss_pred             HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594        158 HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA  237 (542)
Q Consensus       158 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  237 (542)
                      ...-.-+ ...++.+..+-.++++++|...+.+|..|...-++....-. .++++.+++..++.+.++.-.||.....+|
T Consensus       207 qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  207 QALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             HHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            2111111 13467778888888999999999999999885554333222 567788888888999999999999999999


Q ss_pred             cCChhhHHHHHh--hchHH-HHHhhcCCChhH--HH------------------------HH------------------
Q psy12594        238 KDSPSLASTIAD--GATTL-AVEHLTYPHGLV--QK------------------------NA------------------  270 (542)
Q Consensus       238 ~~~~~~~~~~~~--~~~i~-L~~lL~~~~~~v--~~------------------------~a------------------  270 (542)
                      ... -+...+..  ..++| |++-+..++.++  ..                        ..                  
T Consensus       285 eqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  285 EQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             cCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            875 34443332  35666 654432221100  00                        00                  


Q ss_pred             ----HHHHHHHhcCChHHHHHHHhcC----CHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594        271 ----ATLLRDMCKHNLRLANLVVLAG----GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI  342 (542)
Q Consensus       271 ----~~~L~~L~~~~~~~~~~~~~~~----~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  342 (542)
                          -|-|+..+...-+....+....    .+|.|-+.|.++++.++++++.++|.++.+.-.......- ..+|.|+.+
T Consensus       364 D~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~  442 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSL  442 (885)
T ss_pred             cccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHH
Confidence                0111111111111111122223    4555556667788899999999999998765443221111 468888899


Q ss_pred             hcCCChhhHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC--CchhhHHh
Q psy12594        343 LQCPHKEQLQVAAAWTLGQIGKHSV-DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE--NPKELEQM  419 (542)
Q Consensus       343 l~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~--~i~~L~~l  419 (542)
                      |.+ ..+.+|.-+||+|+..+..-. +..+.... .++..|++.+.++  +..||+.|+.|+..+.++++  .+|.|..+
T Consensus       443 L~D-KkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD~--NK~VQEAAcsAfAtleE~A~~eLVp~l~~I  518 (885)
T KOG2023|consen  443 LDD-KKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLDS--NKKVQEAACSAFATLEEEAGEELVPYLEYI  518 (885)
T ss_pred             hcc-CccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            987 457899999999999864211 01111111 1334444444444  46999999999999987753  36666666


Q ss_pred             hcC---------CCCHHHHHHHHHHHHhh
Q psy12594        420 LLG---------NVSEELLASILCAFAKI  439 (542)
Q Consensus       420 L~~---------~~~~~v~~~~l~~l~~l  439 (542)
                      |+.         .++--++.-+++++..-
T Consensus       519 L~~l~~af~kYQ~KNLlILYDAIgtlAds  547 (885)
T KOG2023|consen  519 LDQLVFAFGKYQKKNLLILYDAIGTLADS  547 (885)
T ss_pred             HHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence            551         12334555566666544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.49  E-value=8.9e-13  Score=108.52  Aligned_cols=118  Identities=25%  Similarity=0.386  Sum_probs=111.4

Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE  200 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~  200 (542)
                      +++.|+++.+++++.++++.++..++++|.+++...+.....+.+.|+++.+++++.++++.++..++++|+||+.+.+.
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            56789999999999999999999999999999998889999999999999999999999999999999999999998878


Q ss_pred             HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594        201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK  238 (542)
Q Consensus       201 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  238 (542)
                      ....+.+.|+++.+++++.+.+.++++.++|+|.+|+.
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            88888889999999999999999999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1241|consensus

Probab=99.49  E-value=1.2e-11  Score=123.51  Aligned_cols=425  Identities=15%  Similarity=0.123  Sum_probs=267.9

Q ss_pred             HHHHHHHHHHHHHHHHhcC--CCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHH
Q psy12594         11 DHYQRARLCFVQTMSAFAD--KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVAL   88 (542)
Q Consensus        11 ~~~~~~r~~~~~~l~~l~~--~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~   88 (542)
                      +...++|..++.+|++...  ...........=+++..+..-+++|.+++..|+.+|.+|.+..++-... ......+..
T Consensus       185 e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~-yM~~alfai  263 (859)
T KOG1241|consen  185 ETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP-YMEQALFAI  263 (859)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            4445678888888877655  1111112222234455667778899999999999999999544444433 334456666


Q ss_pred             HHHhhccCCHHHHHHHHHHHHHHhcCChhhh----hHhh---------------cCChHHHHhhhcCCC-------HHHH
Q psy12594         89 VLKDLTKQNKHYKKTALHMLTCVAQQDERCA----GLIE---------------DKDLDSIISSLHDFD-------PDTR  142 (542)
Q Consensus        89 Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~---------------~g~v~~Lv~lL~~~~-------~~~~  142 (542)
                      -+..++++++++...++.+..++|....+..    ...+               .+++|.|+++|...+       ...-
T Consensus       264 tl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~  343 (859)
T KOG1241|consen  264 TLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA  343 (859)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence            7778889999999999999998886543311    1111               156788888885421       2344


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC
Q psy12594        143 ANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE  222 (542)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~  222 (542)
                      ..|..||.-++..   +.+.++. .++|.+-+-+++++..-++.++.+++.+-.+....+..-+-.+++|.++.++.++.
T Consensus       344 kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s  419 (859)
T KOG1241|consen  344 KAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS  419 (859)
T ss_pred             HHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence            5555566555531   1223332 33454555677889999999999999998865444544445899999999999888


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHH-HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH----HhcCCHHH
Q psy12594        223 VNVKADAFLCLADIAKDSPSLAS-TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV----VLAGGLDG  296 (542)
Q Consensus       223 ~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~----~~~~~i~~  296 (542)
                      .-++..+.|+|+.++...++... .......++ ++.-|. +.+.+..++||++.+|+.+.++....-    .....++.
T Consensus       420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~  498 (859)
T KOG1241|consen  420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA  498 (859)
T ss_pred             hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH
Confidence            88999999999999988763332 111123333 333332 258899999999999986543221100    00123344


Q ss_pred             HHHhh----hc---CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHH---------hhcCCCh---hhHHHHHHH
Q psy12594        297 LLRLI----DC---NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQT---------ILQCPHK---EQLQVAAAW  357 (542)
Q Consensus       297 Lv~lL----~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~---------ll~~~~~---~~v~~~a~~  357 (542)
                      ++.-|    ..   .+.+.|.+|..+|+.+...+++.....+. +....++.         .+.....   .+++...|.
T Consensus       499 ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~  577 (859)
T KOG1241|consen  499 IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN  577 (859)
T ss_pred             HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence            34332    22   23358999999999999887766544432 22222222         2222111   356667777


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC---------CCchhhHHhhcCCCCHHH
Q psy12594        358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC---------ENPKELEQMLLGNVSEEL  428 (542)
Q Consensus       358 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~---------~~i~~L~~lL~~~~~~~v  428 (542)
                      +|+.+...-......+.+ .++..+++++.++. +--+.++|..+++.++...         .+.|.|..-|++..+..|
T Consensus       578 ~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~~-s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV  655 (859)
T KOG1241|consen  578 TLQSIIRKVGSDIREVSD-QIMGLFLRIFESKR-SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV  655 (859)
T ss_pred             HHHHHHHHccccchhHHH-HHHHHHHHHHcCCc-cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence            787776654443333333 47788888998844 4568888888888886442         235666666642556678


Q ss_pred             HHHHHHHHHhhCCCCh
Q psy12594        429 LASILCAFAKILPCDP  444 (542)
Q Consensus       429 ~~~~l~~l~~ll~~~~  444 (542)
                      ...+.+.+..+.+.-.
T Consensus       656 c~~aVglVgdl~raL~  671 (859)
T KOG1241|consen  656 CAAAVGLVGDLARALE  671 (859)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888877755433

>KOG2023|consensus

Probab=99.45  E-value=2e-12  Score=126.85  Aligned_cols=439  Identities=14%  Similarity=0.147  Sum_probs=264.3

Q ss_pred             CchHHHHhhhc---CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHH-HhcCC-
Q psy12594         41 NVVDLIVPLLA---DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTC-VAQQD-  115 (542)
Q Consensus        41 g~i~~L~~lL~---s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~-l~~~~-  115 (542)
                      .++..+..+|+   |+++.+|..+...+.++-  ..++...      ++-.++--+++.+...|..|-..|.| +-.+. 
T Consensus        10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~--~~pdfnn------YL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~   81 (885)
T KOG2023|consen   10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFN--LFPDFNN------YLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYN   81 (885)
T ss_pred             HHHHHHHHHHHhccCCChHHHHHHHHHHHHHh--cccchhc------eeeEEEecccccchhHHHHhhhhHhcccccccc
Confidence            45566677775   678899999988888887  5544321      22222222345566666666666666 22221 


Q ss_pred             ---hhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHH
Q psy12594        116 ---ERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD  192 (542)
Q Consensus       116 ---~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  192 (542)
                         ++....++    ..+++.+.+.++-+|...--.+..+++.. .....   ..++|.|..+|.+++....+-|..+|.
T Consensus        82 ~~~~~~~~yiK----s~~l~~lgd~~~lIr~tvGivITTI~s~~-~~~~w---pelLp~L~~~L~s~d~n~~EgA~~AL~  153 (885)
T KOG2023|consen   82 SIPSEVLDYIK----SECLHGLGDASPLIRATVGIVITTIASTG-GLQHW---PELLPQLCELLDSPDYNTCEGAFGALQ  153 (885)
T ss_pred             CCChHHHHHHH----HHHHhhccCchHHHHhhhhheeeeeeccc-ccccc---hhHHHHHHHHhcCCcccccchhHHHHH
Confidence               11111222    23455666677766665555555554311 11111   245899999999999899999999999


Q ss_pred             HHhcCCHHHHHHhhh----CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHH
Q psy12594        193 GIVKHSPELAESASD----CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQ  267 (542)
Q Consensus       193 nl~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~  267 (542)
                      .+++++++.-+.-+.    .-.+|.++++.+++++.+|..|+.++-.+.-..+. .-...-...++ +..+-.+.+++||
T Consensus       154 KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVR  232 (885)
T KOG2023|consen  154 KICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVR  232 (885)
T ss_pred             HHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHH
Confidence            999977655443221    23468899999999999999999998877655431 11222245677 7888878899999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh--HHHHHHHhhCchHHHHHhhcC
Q psy12594        268 KNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE--QIAEQIIELQGVGSLQTILQC  345 (542)
Q Consensus       268 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~  345 (542)
                      .+.|.+|..|..-.++....- -.++++.++...++.+..+...|+.....++....  +....... +.+|.|++-+..
T Consensus       233 k~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~-kliPvLl~~M~Y  310 (885)
T KOG2023|consen  233 KNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD-KLIPVLLSGMVY  310 (885)
T ss_pred             HHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH-HHHHHHHccCcc
Confidence            999999999987665543211 13567788888888899999999999988886531  11122221 566666544332


Q ss_pred             CChhhHHHH-----------------------------------------------HHHHHHHhhcCChHHHHHHHHcCC
Q psy12594        346 PHKEQLQVA-----------------------------------------------AAWTLGQIGKHSVDNVTALCEENV  378 (542)
Q Consensus       346 ~~~~~v~~~-----------------------------------------------a~~~L~~l~~~~~~~~~~l~~~~~  378 (542)
                      +.++.+...                                               .-|-|....+..-+....++....
T Consensus       311 sd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el  390 (885)
T KOG2023|consen  311 SDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL  390 (885)
T ss_pred             ccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH
Confidence            111100000                                               002222222211222223334444


Q ss_pred             hHHHHHH----HhcCCCChHHHHHHHHHHHHHHhhC---------CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCCh-
Q psy12594        379 LSTLLSK----ITQTCVSDNLKSKCKNALNILIPKC---------ENPKELEQMLLGNVSEELLASILCAFAKILPCDP-  444 (542)
Q Consensus       379 l~~L~~l----l~~~~~~~~v~~~a~~aL~nl~~~~---------~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~-  444 (542)
                      ++.++-+    |.+++  -.+|+.++.||+.+.+.|         +.+|.|.++|. ++.+-|+..++|+|++.-..-. 
T Consensus       391 L~~l~PlLk~~L~~~~--W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~-DKkplVRsITCWTLsRys~wv~~  467 (885)
T KOG2023|consen  391 LPILLPLLKEHLSSEE--WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD-DKKPLVRSITCWTLSRYSKWVVQ  467 (885)
T ss_pred             HHHHHHHHHHHcCcch--hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc-cCccceeeeeeeeHhhhhhhHhc
Confidence            5555444    44443  369999999999998765         23577888888 8888999999999987644321 


Q ss_pred             hhh-hHHHH--hcchHHhhhcC-CCCcHHH----HHHHHhccCccchhcccCccchHHHHHHHhhcCCC
Q psy12594        445 VAR-RSFVT--SHCLRKVQEIE-PTPEIAP----HLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQ  505 (542)
Q Consensus       445 ~~~-~~~~~--~g~~~~l~~l~-~~~~~~~----a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  505 (542)
                      ..+ +.|..  .|.+   .++. .|+.+++    |...++.-...+.+.|+ ......+......|+.+
T Consensus       468 ~~~~~~f~pvL~~ll---~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l-~~IL~~l~~af~kYQ~K  532 (885)
T KOG2023|consen  468 DSRDEYFKPVLEGLL---RRLLDSNKKVQEAACSAFATLEEEAGEELVPYL-EYILDQLVFAFGKYQKK  532 (885)
T ss_pred             CChHhhhHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHhhc
Confidence            111 22221  1211   2222 7888886    45555555555655544 33344555556666554

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.45  E-value=8.6e-11  Score=114.61  Aligned_cols=318  Identities=15%  Similarity=0.101  Sum_probs=231.5

Q ss_pred             CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-Hhhc-----CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594         84 NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-LIED-----KDLDSIISSLHDFDPDTRANAALALGGLAKDN  156 (542)
Q Consensus        84 ~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~-----g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  156 (542)
                      .+...++.+++. .++++..+.+..+..+....+.... +.+.     .....++.+|+.+|..+...++..|+.+....
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            356677777775 6688888888888888877766666 5553     56788888999999999999999999998544


Q ss_pred             hHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHH
Q psy12594        157 KHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCL  233 (542)
Q Consensus       157 ~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L  233 (542)
                      +.........-.++.+...++++ +...+..++.+|..|.. .++.|..+.+.++++.|..+++..  +..++..++.++
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            33211111111345566666654 47788888999999998 677888888889999999999853  568999999999


Q ss_pred             HHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCC------hHHHHHHHhcCCHHHHHHhhhcC-
Q psy12594        234 ADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHN------LRLANLVVLAGGLDGLLRLIDCN-  304 (542)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~~i~~Lv~lL~~~-  304 (542)
                      |-++-... ....+...++++ ++.+++.. .+.+.+-++.+|.|+....      ......+++.++. .++..|... 
T Consensus       212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~~rk  289 (429)
T cd00256         212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLEQRK  289 (429)
T ss_pred             HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHhcCC
Confidence            99998764 666677789999 99999988 7999999999999998643      2233445555554 455555443 


Q ss_pred             --CccchHHHHHHHhHh--------h--------------cCCh---------HHHHHHHhh--CchHHHHHhhcCCChh
Q psy12594        305 --GGYNSLPAIMALGYM--------S--------------AQSE---------QIAEQIIEL--QGVGSLQTILQCPHKE  349 (542)
Q Consensus       305 --~~~~~~~a~~~L~~l--------~--------------~~~~---------~~~~~~~~~--~~l~~L~~ll~~~~~~  349 (542)
                        |+++. ..+..|...        +              .-+|         +....+-+.  .++..|++++..++++
T Consensus       290 ~~DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         290 YDDEDLT-DDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCcHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence              33322 222222211        1              0011         122222222  3678899999766677


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      .+..-||.-+|.++.+.|.-+..+-+.|+=..+++++.++  +++||.+|..|+..++
T Consensus       369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~--d~~Vr~eAL~avQklm  424 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE--DPNVRYEALLAVQKLM  424 (429)
T ss_pred             ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            8888999999999999998888777889999999999987  5699999999998775

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.45  E-value=2.1e-12  Score=106.26  Aligned_cols=117  Identities=22%  Similarity=0.363  Sum_probs=109.7

Q ss_pred             HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594        162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP  241 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  241 (542)
                      .+++.|+++.++++++++++.++..++++|.+++.++++....+++.++++.+.+++.+++++++..++|+|++++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            35688999999999999999999999999999999888999999999999999999999999999999999999999887


Q ss_pred             hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594        242 SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC  278 (542)
Q Consensus       242 ~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~  278 (542)
                      .....+...|+++ ++.++...+..+++.++++|.+|+
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            7777888889999 999999999999999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1241|consensus

Probab=99.45  E-value=2.3e-11  Score=121.44  Aligned_cols=385  Identities=18%  Similarity=0.164  Sum_probs=251.5

Q ss_pred             hcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC-HHHHHHHHHHHHHHhcC-ChhhhhHhhcCCh
Q psy12594         50 LADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN-KHYKKTALHMLTCVAQQ-DERCAGLIEDKDL  127 (542)
Q Consensus        50 L~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~-~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v  127 (542)
                      |.+..|.....|..++..++..+-|.+  .  ..+.++.++.....+. ..++..++.+++.+|.+ +++...-....++
T Consensus        99 L~~~ep~~~s~Aaq~va~IA~~ElP~n--~--wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL  174 (859)
T KOG1241|consen   99 LGSPEPRRPSSAAQCVAAIACIELPQN--Q--WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL  174 (859)
T ss_pred             cCCCCCCccchHHHHHHHHHHhhCchh--h--CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence            344445555555555555551111111  0  1233444444444433 45899999999999977 3442223344677


Q ss_pred             HHHHhhhcCC--CHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594        128 DSIISSLHDF--DPDTRANAALALGGLAKDNK-HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES  204 (542)
Q Consensus       128 ~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~  204 (542)
                      ..++..++..  +..+|..|..+|.+-..... .+....-..=++...++.-++++.+++.+|..||..|..-.-+....
T Consensus       175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~  254 (859)
T KOG1241|consen  175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP  254 (859)
T ss_pred             HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777644  57899999999987653211 22222222334667778888899999999999999999855555555


Q ss_pred             hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH----HH--------------HhhchHH-HHHhhcCC---
Q psy12594        205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS----TI--------------ADGATTL-AVEHLTYP---  262 (542)
Q Consensus       205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~--------------~~~~~i~-L~~lL~~~---  262 (542)
                      .........-+.-+++.++++.-+++..-+++|...-+..-    .+              .-..++| |+++|...   
T Consensus       255 yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~  334 (859)
T KOG1241|consen  255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED  334 (859)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence            55555566666777888999999999999989865433111    00              0136788 88888652   


Q ss_pred             ----ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHH
Q psy12594        263 ----HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGS  338 (542)
Q Consensus       263 ----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  338 (542)
                          +-.+...|..||.-++....+.   ++ ..++|-+-+-++++++.-+..|+.++|.+..+....+..-+..+++|.
T Consensus       335 ~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~  410 (859)
T KOG1241|consen  335 DDDDDWNPAKAAGVCLMLFAQCVGDD---IV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS  410 (859)
T ss_pred             cccccCcHHHHHHHHHHHHHHHhccc---ch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence                1235666667777666422111   11 144555555677899999999999999998877766666666799999


Q ss_pred             HHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------
Q psy12594        339 LQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA-LCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------  410 (542)
Q Consensus       339 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------  410 (542)
                      ++.++.++ .-.++..+.|+++.++.+.++.+-. ......++.++.-|++.   +.+-.+++|++.+|.+.+       
T Consensus       411 ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De---Prva~N~CWAf~~Laea~~eA~~s~  486 (859)
T KOG1241|consen  411 IINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE---PRVASNVCWAFISLAEAAYEAAVSN  486 (859)
T ss_pred             HHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC---chHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999964 4588899999999998877654322 33456788888888875   589999999999997431       


Q ss_pred             -------CCchh-hHHhhcC----C-CCHHHHHHHHHHHHhhCCCChhh
Q psy12594        411 -------ENPKE-LEQMLLG----N-VSEELLASILCAFAKILPCDPVA  446 (542)
Q Consensus       411 -------~~i~~-L~~lL~~----~-~~~~v~~~~l~~l~~ll~~~~~~  446 (542)
                             .+.+. +-.||+.    + .+..++..+-.+|..++...++.
T Consensus       487 ~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~  535 (859)
T KOG1241|consen  487 GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD  535 (859)
T ss_pred             CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence                   01222 2234441    1 23467777778888777776654

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.44  E-value=2.2e-10  Score=111.80  Aligned_cols=320  Identities=14%  Similarity=0.128  Sum_probs=231.7

Q ss_pred             CchHHHHhhhcC-CChHHHHHHHHHHHHhHccCC-hHHHHHHHh-----cCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKH-VDIRQEVLE-----RNLVALVLKDLTKQNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~-----~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~  113 (542)
                      ..+..++.+++. ..+++....+..+..+.  .. +.....+.+     .+...+++.+|..++..+...++.+|..+..
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll--~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~  130 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDML--QEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHH--HhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence            566677788764 56788888888888888  55 554455554     3567888889998999999999999999875


Q ss_pred             CChhhhh-HhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC--CHhHHHHHHH
Q psy12594        114 QDERCAG-LIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP--QLSLKHAAAF  189 (542)
Q Consensus       114 ~~~~~~~-~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~  189 (542)
                      ..+.... ....-.++-+...+... +...+..++.+|..+.. .+.+|..+.+.++++.|+.+|+..  +..++..++.
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll  209 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF  209 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence            5432211 11111334455555544 36777788899999987 567789999999999999999863  4689999999


Q ss_pred             HHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC------hhhHHHHHhhchHHHHHhhcCC
Q psy12594        190 ALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDS------PSLASTIADGATTLAVEHLTYP  262 (542)
Q Consensus       190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~L~~lL~~~  262 (542)
                      ++.-++. +++........+.++.++++++.. ..++.+-++.+|.|+....      ..+...++..++.+++..|...
T Consensus       210 ~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r  288 (429)
T cd00256         210 CIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR  288 (429)
T ss_pred             HHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence            9999998 555667777789999999999955 5679999999999999843      1244566666776655555543


Q ss_pred             ---ChhHHHHHHHHHHH-------Hhc--------------CC---------hHHHHHHHhc--CCHHHHHHhhh-cCCc
Q psy12594        263 ---HGLVQKNAATLLRD-------MCK--------------HN---------LRLANLVVLA--GGLDGLLRLID-CNGG  306 (542)
Q Consensus       263 ---~~~v~~~a~~~L~~-------L~~--------------~~---------~~~~~~~~~~--~~i~~Lv~lL~-~~~~  306 (542)
                         |+++....-..-..       ++.              .+         .++...+.+.  ..+..|+.+|. +.++
T Consensus       289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~  368 (429)
T cd00256         289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP  368 (429)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence               66654433222111       110              01         1333434433  24678889984 5567


Q ss_pred             cchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594        307 YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH  365 (542)
Q Consensus       307 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  365 (542)
                      .+..-||.=||.++...|.....+-+.|+-..+++++.++ +++++.+|+.|+..+..+
T Consensus       369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            7888899999999999998888888889999999999985 579999999999988543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168|consensus

Probab=99.41  E-value=2.2e-10  Score=115.62  Aligned_cols=257  Identities=16%  Similarity=0.139  Sum_probs=208.4

Q ss_pred             cHHHHHHhhccC-CHHHHHHHHHHHHHH-hcCChhhhh-HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHH
Q psy12594         85 LVALVLKDLTKQ-NKHYKKTALHMLTCV-AQQDERCAG-LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFA  160 (542)
Q Consensus        85 ~l~~Lv~~L~~~-~~~~~~~a~~~L~~l-~~~~~~~~~-~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~  160 (542)
                      -+..|+.-|... ++..+.+++.=|+.+ ...+++... +--..++|.|+.+|+++. .+++..|+++|.+++..-|.-.
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            455666667654 788888887777764 455655555 555678999999999874 9999999999999998888888


Q ss_pred             HHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594        161 ERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD  239 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  239 (542)
                      ..+++.++||.|+.-|..- ..++.++++.+|..|++..+   ..+.+.|++...+..+.-.....++.|+.+..|+|..
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999877764 48999999999999998544   4667799999999999888889999999999999975


Q ss_pred             Ch-hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc---CChHHHHHHHhcCCHHHHHHhhhcCCcc----chH
Q psy12594        240 SP-SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK---HNLRLANLVVLAGGLDGLLRLIDCNGGY----NSL  310 (542)
Q Consensus       240 ~~-~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~i~~Lv~lL~~~~~~----~~~  310 (542)
                      -. +-...+.  ..+| |..+|+..|....+.++-|+..++.   +.++..+.+...+.+....+++.-....    +..
T Consensus       325 i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  325 IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence            32 2222232  6799 9999999999999999999999865   4577777788889999999998766432    556


Q ss_pred             HHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594        311 PAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP  346 (542)
Q Consensus       311 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  346 (542)
                      ..++.+..++.+++-....+.+.++...|..+|...
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence            677888888889899999999999999999888764

>PTZ00429 beta-adaptin; Provisional

Probab=99.37  E-value=3.6e-09  Score=111.32  Aligned_cols=370  Identities=14%  Similarity=0.085  Sum_probs=227.0

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI  122 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  122 (542)
                      +..+.+=+++.+|.+|..|+++++++.  . ++..+     -.++.+.+.+.+.++.||+.|+.++.++-..+++.  +.
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~Ir--~-~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel--v~  176 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCIR--V-SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL--FY  176 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCC--c-HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc--cc
Confidence            344444556677888888888777776  2 22211     13456677788899999999999999987655432  34


Q ss_pred             hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594        123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA  202 (542)
Q Consensus       123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~  202 (542)
                      +.+.++.|.++|.+.|+.+...|+.+|..+...++....  ...+.+..|+..+.+-++-.|...+.+|....-.+.+..
T Consensus       177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~  254 (746)
T PTZ00429        177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA  254 (746)
T ss_pred             ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH
Confidence            567888999999999999999999999999865543211  223345667777776666666666666654322111111


Q ss_pred             HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594        203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       203 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~  280 (542)
                           ...+..+...+++.++.|.-.|+.++.++.... ++....+.. .+.. ++.+ .+++++++..++..+..+...
T Consensus       255 -----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~  327 (746)
T PTZ00429        255 -----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALLVI  327 (746)
T ss_pred             -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence                 245577888888889999999999999887542 222222221 2223 5555 345677777777766666544


Q ss_pred             ChHHHHHHH-------------------------hc----CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594        281 NLRLANLVV-------------------------LA----GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII  331 (542)
Q Consensus       281 ~~~~~~~~~-------------------------~~----~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  331 (542)
                      .|.....-.                         +.    .++..|.++..+.+...+..+++++|.++..-+....   
T Consensus       328 ~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~---  404 (746)
T PTZ00429        328 FPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAP---  404 (746)
T ss_pred             CHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH---
Confidence            432211100                         00    1334455555566667778888888888765444332   


Q ss_pred             hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHh-cCCCChHHHHHHHHHHHHHHhhC
Q psy12594        332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKIT-QTCVSDNLKSKCKNALNILIPKC  410 (542)
Q Consensus       332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~v~~~a~~aL~nl~~~~  410 (542)
                        ..+..|++++....  .+..++...+.++....|+..       .++.|+..+. ..-.+++.|....|.|+.+....
T Consensus       405 --~cV~~Ll~ll~~~~--~~v~e~i~vik~IlrkyP~~~-------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I  473 (746)
T PTZ00429        405 --DCANLLLQIVDRRP--ELLPQVVTAAKDIVRKYPELL-------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI  473 (746)
T ss_pred             --HHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHCccHH-------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence              45666777776532  234456777777766655421       2344443221 11124578888899999876432


Q ss_pred             CCch-hhHHhhcC--CCCHHHHHHHHHHHHhhCCCChh
Q psy12594        411 ENPK-ELEQMLLG--NVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       411 ~~i~-~L~~lL~~--~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                      +.-+ .|..+++.  ..+..|+..++.+..++....+.
T Consensus       474 ~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~  511 (746)
T PTZ00429        474 ENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ  511 (746)
T ss_pred             hhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence            2222 22233331  45667888888888888777764

>KOG1060|consensus

Probab=99.28  E-value=4e-09  Score=106.03  Aligned_cols=364  Identities=16%  Similarity=0.190  Sum_probs=253.0

Q ss_pred             HHHHhhhcCCChHHHHHHH-HHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594         44 DLIVPLLADKVPSIQHAAL-ATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI  122 (542)
Q Consensus        44 ~~L~~lL~s~~~~v~~~a~-~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  122 (542)
                      .-|.++|.|........|+ +++.-++  ...+.      ...+|.+|+...+.+.++++..--.|.+.+...++...  
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA--~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIA--KGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHh--cCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--
Confidence            3578889888777777777 4555566  33332      34788999999999999999999999999877765443  


Q ss_pred             hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594        123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA  202 (542)
Q Consensus       123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~  202 (542)
                        =-+..+-+-|.++++.+|..|+++|..+-.  +     ++..-++-.+-++..++.+.+|..|+.++-.+-+-+++..
T Consensus       108 --LSIntfQk~L~DpN~LiRasALRvlSsIRv--p-----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k  178 (968)
T KOG1060|consen  108 --LSINTFQKALKDPNQLIRASALRVLSSIRV--P-----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK  178 (968)
T ss_pred             --eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--h-----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence              135788899999999999999888887642  1     1111113334456677889999999999999998888777


Q ss_pred             HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCC
Q psy12594        203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHN  281 (542)
Q Consensus       203 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~  281 (542)
                      .++.     +.+-.+|.+.++-+.-.|+.++-.+|-+.-+..     ++-.. +..+|.+-+++-+...+..|...+++.
T Consensus       179 ~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerldLI-----HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~  248 (968)
T KOG1060|consen  179 DQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI-----HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQ  248 (968)
T ss_pred             HHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh-----hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhc
Confidence            6554     778888899999999999999988876543222     24455 888888888888888888888877663


Q ss_pred             ---hHHHHHHH-hcC------------------------CHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594        282 ---LRLANLVV-LAG------------------------GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL  333 (542)
Q Consensus       282 ---~~~~~~~~-~~~------------------------~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  333 (542)
                         |....... +.|                        .+...-.++.+.++.+..+++.+...++..+..       .
T Consensus       249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~  321 (968)
T KOG1060|consen  249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------T  321 (968)
T ss_pred             CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------H
Confidence               21100000 011                        123334566778888999999999988754321       2


Q ss_pred             CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH-----------------HHH--------HHHHcCChHHHHHHHhc
Q psy12594        334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD-----------------NVT--------ALCEENVLSTLLSKITQ  388 (542)
Q Consensus       334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~--------~l~~~~~l~~L~~ll~~  388 (542)
                      .+++.|+.+|++.+  .+|...+..+..++...+.                 +.+        .+++..-+..++.-++.
T Consensus       322 ~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~  399 (968)
T KOG1060|consen  322 KIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT  399 (968)
T ss_pred             HHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            46788999998854  5777677777666533222                 221        12344445555444432


Q ss_pred             C--CCChHHHHHHHHHHHHHHhhC-----CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhh
Q psy12594        389 T--CVSDNLKSKCKNALNILIPKC-----ENPKELEQMLLGNVSEELLASILCAFAKILPCDPVA  446 (542)
Q Consensus       389 ~--~~~~~v~~~a~~aL~nl~~~~-----~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~  446 (542)
                      .  +++.++-..++.||+.+....     ..+..|+.++. +.|..|+..+.-.|..++..+|..
T Consensus       400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Lls-shde~Vv~eaV~vIk~Llq~~p~~  463 (968)
T KOG1060|consen  400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLS-SHDELVVAEAVVVIKRLLQKDPAE  463 (968)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHh-cccchhHHHHHHHHHHHHhhChHH
Confidence            1  112346667777787776543     23788999999 899999999999999999988753

>KOG0946|consensus

Probab=99.26  E-value=1.4e-08  Score=102.30  Aligned_cols=322  Identities=17%  Similarity=0.231  Sum_probs=242.3

Q ss_pred             ChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCH---
Q psy12594        126 DLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP--QLSLKHAAAFALDGIVKHSP---  199 (542)
Q Consensus       126 ~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~---  199 (542)
                      .++.|+.-+.+.. ++-|..|+..|..+++   .+|..+...| +++|++.|+.+  +++....++.++.++..++.   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            5677777666554 7889999999999986   6677777766 89999999875  69999999999999988652   


Q ss_pred             ---HH----------HHH-hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHH-hhchHH-HHHhhcCC
Q psy12594        200 ---EL----------AES-ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTIA-DGATTL-AVEHLTYP  262 (542)
Q Consensus       200 ---~~----------~~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~-~~~~i~-L~~lL~~~  262 (542)
                         +.          .+. +...+.|..++..+...|-.+|..++..|.++-.+.+ +.++.+. ...++. ++.+|.+.
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds  178 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS  178 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence               11          112 2246778889999998999999999999999987654 4555444 467888 99999999


Q ss_pred             ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC---c-cchHHHHHHHhHhhcCChHHHHHHHhhCchHH
Q psy12594        263 HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG---G-YNSLPAIMALGYMSAQSEQIAEQIIELQGVGS  338 (542)
Q Consensus       263 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  338 (542)
                      .+.+|..++-.|..+++.++...+.+.=..++.+|...+..+.   . -+...++..|.||-..+......+.+.+.+|.
T Consensus       179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r  258 (970)
T KOG0946|consen  179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR  258 (970)
T ss_pred             hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence            9999999999999999999999887777789999999998753   2 37888999999999999999999999999999


Q ss_pred             HHHhhcCCC--hh--------h--HHHHHHHHHHHhhcC-C-----hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHH
Q psy12594        339 LQTILQCPH--KE--------Q--LQVAAAWTLGQIGKH-S-----VDNVTALCEENVLSTLLSKITQTCVSDNLKSKCK  400 (542)
Q Consensus       339 L~~ll~~~~--~~--------~--v~~~a~~~L~~l~~~-~-----~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~  400 (542)
                      |..+|....  +.        .  -...++.++..++.. +     ....+.+..++++..|+.++.++.-..+|+.++.
T Consensus       259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi  338 (970)
T KOG0946|consen  259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI  338 (970)
T ss_pred             HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence            997775321  10        0  122345555555432 1     1233456678999999999998866789999999


Q ss_pred             HHHHHHHhhC------------CCch----h----hHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHH
Q psy12594        401 NALNILIPKC------------ENPK----E----LEQMLLGNVSEELLASILCAFAKILPCDPVARRSFV  451 (542)
Q Consensus       401 ~aL~nl~~~~------------~~i~----~----L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~  451 (542)
                      .++++.++.+            ..+|    .    ++.+.....++..+..+++.+...+..+.+..+.|+
T Consensus       339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l  409 (970)
T KOG0946|consen  339 ITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL  409 (970)
T ss_pred             HHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence            9999997431            1122    2    223333133668888888888888877766555443

>KOG2759|consensus

Probab=99.26  E-value=3.5e-09  Score=99.61  Aligned_cols=317  Identities=14%  Similarity=0.103  Sum_probs=223.4

Q ss_pred             cHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-Hh------hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594         85 LVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-LI------EDKDLDSIISSLHDFDPDTRANAALALGGLAKDN  156 (542)
Q Consensus        85 ~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-~~------~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  156 (542)
                      .+..++.++++ ..++....++..+..+.+.+..... +.      .....+.++.+|..+++.+.+.+.++++.++...
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g  145 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG  145 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence            45566777775 3466666777777776554433333 21      2235788999999999999988889998887533


Q ss_pred             hHHH---HHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC--CCHHHHHHHH
Q psy12594        157 KHFA---ERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN--DEVNVKADAF  230 (542)
Q Consensus       157 ~~~~---~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~  230 (542)
                      +...   +.-+.   ...|...+++ .++.-...|++||..+.. -++.|..++..+++..++..+.+  .+-.++.+.+
T Consensus       146 ~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  146 NCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             cccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            2211   11111   2334455555 557788889999999998 57789999989999999998842  3678999999


Q ss_pred             HHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCCh------HHHHHHHhcCCHHHHHHhhh
Q psy12594        231 LCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNL------RLANLVVLAGGLDGLLRLID  302 (542)
Q Consensus       231 ~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~------~~~~~~~~~~~i~~Lv~lL~  302 (542)
                      .++|-|+-+. ...+.+...+.++ |..++++. .+.|.+-++.+++|+....+      +....++..++.+.+-.+..
T Consensus       222 fciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~  300 (442)
T KOG2759|consen  222 FCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE  300 (442)
T ss_pred             HHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence            9999998775 4667777789999 99999998 89999999999999997774      33344555555444444333


Q ss_pred             c--CCccchHHHHH-------HHhHhhcC--------------Ch---------HHHHHHHhh--CchHHHHHhhcCCCh
Q psy12594        303 C--NGGYNSLPAIM-------ALGYMSAQ--------------SE---------QIAEQIIEL--QGVGSLQTILQCPHK  348 (542)
Q Consensus       303 ~--~~~~~~~~a~~-------~L~~l~~~--------------~~---------~~~~~~~~~--~~l~~L~~ll~~~~~  348 (542)
                      .  .|+++....-.       -...|+..              +|         +....+.+.  .++..|+.+|+.+++
T Consensus       301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D  380 (442)
T KOG2759|consen  301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND  380 (442)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence            3  23322211111       11111110              11         122223222  478999999999887


Q ss_pred             hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        349 EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      +.+...||.-++.+..+.|+-...+.+.|+-..+++++.+++  ++||.+|..|+..++.
T Consensus       381 p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d--~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  381 PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED--PEVRYHALLAVQKLMV  438 (442)
T ss_pred             CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC--chHHHHHHHHHHHHHh
Confidence            888889999999999999999999999999999999999985  5999999999887763

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.23  E-value=8.6e-09  Score=100.10  Aligned_cols=413  Identities=16%  Similarity=0.139  Sum_probs=255.4

Q ss_pred             HHHHHHHHHHHHHHHH-hcC------CCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc
Q psy12594         11 DHYQRARLCFVQTMSA-FAD------KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER   83 (542)
Q Consensus        11 ~~~~~~r~~~~~~l~~-l~~------~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~   83 (542)
                      ++-..+|..++.+|.+ +-.      .+..|..+     ++..+..-+++|.+++..|..+|.++.+..++-. ..+.+.
T Consensus       189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm-~~ymE~  262 (858)
T COG5215         189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFM-QSYMEN  262 (858)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            4456678888888877 322      23333333     3345566778999999999999999994333333 355565


Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-Hh----------------hcCChHHHHhhhcCC-------CH
Q psy12594         84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LI----------------EDKDLDSIISSLHDF-------DP  139 (542)
Q Consensus        84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~----------------~~g~v~~Lv~lL~~~-------~~  139 (542)
                      -......+.+++++.++...+..+...+|....+... ..                -.+++|.|+.+|...       +.
T Consensus       263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW  342 (858)
T COG5215         263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW  342 (858)
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence            5666677889999999999999998777754322211 11                123789999999652       13


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH-HHHHhhhCCChHHHHHhh
Q psy12594        140 DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE-LAESASDCDVIPLLIKAL  218 (542)
Q Consensus       140 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~-~~~~~~~~~~i~~L~~ll  218 (542)
                      .+...|..||.-.+..   ..+.+++. ++..+-+-+++++..-++.++.+++.+..+..+ ....++ ..++|.+..++
T Consensus       343 n~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m  417 (858)
T COG5215         343 NPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEM  417 (858)
T ss_pred             chhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhc
Confidence            4555666666655531   12333322 344444566778888999999999998875433 344455 78889999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHH-hhcC--CChhHHHHHHHHHHHHhcCChHHHHH--HHhcC
Q psy12594        219 NNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVE-HLTY--PHGLVQKNAATLLRDMCKHNLRLANL--VVLAG  292 (542)
Q Consensus       219 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~-lL~~--~~~~v~~~a~~~L~~L~~~~~~~~~~--~~~~~  292 (542)
                      .++..-++..++|+++.++.+-+....   ..+-++ .++ ++..  +.+.+..+++|...|+..|-+.....  -.-..
T Consensus       418 ~D~~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~  494 (858)
T COG5215         418 SDSCLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAK  494 (858)
T ss_pred             ccceeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHH
Confidence            988888999999999999876543222   222222 222 2221  25778889999999999886544311  11123


Q ss_pred             CHHHHHHhhhc------CCccchHHHHHHHhHhhcCChHHHHHHHhh----------CchHHHHHhhcCCC---hhhHHH
Q psy12594        293 GLDGLLRLIDC------NGGYNSLPAIMALGYMSAQSEQIAEQIIEL----------QGVGSLQTILQCPH---KEQLQV  353 (542)
Q Consensus       293 ~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~~~~---~~~v~~  353 (542)
                      ..+.++.-|-+      .+...|..+..+|+.+...+++....++-.          ..+..+-+.+..+.   .++++.
T Consensus       495 fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqS  574 (858)
T COG5215         495 FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQS  574 (858)
T ss_pred             HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            34444443322      334578888888988876655433222110          12222222232211   135566


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh---------CCCchhhHHhhcCCC
Q psy12594        354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK---------CENPKELEQMLLGNV  424 (542)
Q Consensus       354 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~---------~~~i~~L~~lL~~~~  424 (542)
                      +-+..|..+....+.....+-+ .++..++++|.+.++ .-+-.....+++++...         ..++|.|.+-|+ ..
T Consensus       575 N~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~-t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~  651 (858)
T COG5215         575 NYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKP-TTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CT  651 (858)
T ss_pred             HHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCC-chhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-ch
Confidence            6666666665544332222221 266788888887743 34666777777777532         346888888888 88


Q ss_pred             CHHHHHHHHHHHHhhC
Q psy12594        425 SEELLASILCAFAKIL  440 (542)
Q Consensus       425 ~~~v~~~~l~~l~~ll  440 (542)
                      |..+...+.+.+..+.
T Consensus       652 d~~v~~~avglvgdla  667 (858)
T COG5215         652 DRFVLNSAVGLVGDLA  667 (858)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            8888777777665553

>KOG0946|consensus

Probab=99.22  E-value=2.6e-08  Score=100.38  Aligned_cols=319  Identities=16%  Similarity=0.213  Sum_probs=241.3

Q ss_pred             cHHHHHHhhccC-CHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCCh----
Q psy12594         85 LVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNK----  157 (542)
Q Consensus        85 ~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~----  157 (542)
                      .++.|++.+.+. -.+-|+.|+..|..++.   ..+.-+...+++.|++.|+.+  |+++...++.++.++....+    
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            566777766653 37789999999988874   334444556789999999765  69999999999999875432    


Q ss_pred             ------------HHHHHHHHc-CChHHHHHhccCCCHhHHHHHHHHHHHHhcCC-HHHHHHhh-hCCChHHHHHhhcCCC
Q psy12594        158 ------------HFAERIVQC-GALPPLVQILASPQLSLKHAAAFALDGIVKHS-PELAESAS-DCDVIPLLIKALNNDE  222 (542)
Q Consensus       158 ------------~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~-~~~~i~~L~~ll~~~~  222 (542)
                                  ...+.+++. +.|..++.++...+-.+|..+...|.++.++- ++.+..+. ..-+|..++.+|.+..
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr  179 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR  179 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence                        123334433 77899999999999999999999999987754 44444443 4668999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC---C-hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHH
Q psy12594        223 VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP---H-GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGL  297 (542)
Q Consensus       223 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~---~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L  297 (542)
                      ..+|-.++..|..+.++++..++.+.-.++.. |++++...   | .-|...|...|-||-+++..+...+.+.+.+|+|
T Consensus       180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL  259 (970)
T KOG0946|consen  180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL  259 (970)
T ss_pred             hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence            99999999999999999988888888889999 99999865   3 3688899999999999999999989999999999


Q ss_pred             HHhhhc---CCc-----c-----chHHHHHHHhHhhc-CCh-----HHHHHHHhhCchHHHHHhhcCC-ChhhHHHHHHH
Q psy12594        298 LRLIDC---NGG-----Y-----NSLPAIMALGYMSA-QSE-----QIAEQIIELQGVGSLQTILQCP-HKEQLQVAAAW  357 (542)
Q Consensus       298 v~lL~~---~~~-----~-----~~~~a~~~L~~l~~-~~~-----~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~  357 (542)
                      ..+|.-   .+.     .     -...++.++..++. +++     .....+..++++..|..++.++ -..+|+..+..
T Consensus       260 ~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesii  339 (970)
T KOG0946|consen  260 LKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESII  339 (970)
T ss_pred             HhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHH
Confidence            988754   231     1     12234445555543 221     2235677789999999999886 23689999999


Q ss_pred             HHHHhhcCChHHHHHHHHc---------CChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594        358 TLGQIGKHSVDNVTALCEE---------NVLSTLLSKITQTCVSDNLKSKCKNALNIL  406 (542)
Q Consensus       358 ~L~~l~~~~~~~~~~l~~~---------~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl  406 (542)
                      ++++...++..+...+.+.         ..+-.++..+.++...+..|-.+.+++..+
T Consensus       340 tvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~  397 (970)
T KOG0946|consen  340 TVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSY  397 (970)
T ss_pred             HHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            9999999988777776543         133345555555555678888888888776

>KOG1062|consensus

Probab=99.21  E-value=6.9e-09  Score=104.81  Aligned_cols=355  Identities=14%  Similarity=0.107  Sum_probs=204.1

Q ss_pred             cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHH
Q psy12594         51 ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI  130 (542)
Q Consensus        51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L  130 (542)
                      ++.+.-++..|+.+|++++  .. +.     ..+..|.+.+++++.++.+|+.|+.+..++-...|+..+    ..++..
T Consensus       117 ~s~nq~vVglAL~alg~i~--s~-Em-----ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f~~~~  184 (866)
T KOG1062|consen  117 NSSNQYVVGLALCALGNIC--SP-EM-----ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HFVIAF  184 (866)
T ss_pred             cCCCeeehHHHHHHhhccC--CH-HH-----hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----HhhHHH
Confidence            4566778888999999998  32 22     234678888999999999999999999998877776665    346778


Q ss_pred             HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC---------------CCHhHHHHHHHHHHHHh
Q psy12594        131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS---------------PQLSLKHAAAFALDGIV  195 (542)
Q Consensus       131 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~nl~  195 (542)
                      ..+|.+.+..+...++..+..++..+++....+-+  +++.|+..|+.               ++|-+|...++.|+-+.
T Consensus       185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG  262 (866)
T KOG1062|consen  185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG  262 (866)
T ss_pred             HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence            88888888888888888888888777765555554  56666666642               35889999999999999


Q ss_pred             cCCHHHHHHhhhCCChHHHHHhhcCCC------HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHH
Q psy12594        196 KHSPELAESASDCDVIPLLIKALNNDE------VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQK  268 (542)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~  268 (542)
                      .++++..+.+.     ..|.+...+.+      ..+...++.++..|-...+ .+.     -++. |-.+|.+.|..+|+
T Consensus       263 q~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~-Lrv-----lainiLgkFL~n~d~NirY  331 (866)
T KOG1062|consen  263 QNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG-LRV-----LAINILGKFLLNRDNNIRY  331 (866)
T ss_pred             CCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCch-HHH-----HHHHHHHHHhcCCccceee
Confidence            98776666554     34444443221      1244444444444433321 222     2334 44555555555555


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh
Q psy12594        269 NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK  348 (542)
Q Consensus       269 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  348 (542)
                      .++..|......++..++.-.     ..++++|+++|..++..|+..+..|...+.  ..     ..+..|+.+|... +
T Consensus       332 vaLn~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~N--v~-----~mv~eLl~fL~~~-d  398 (866)
T KOG1062|consen  332 VALNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNESN--VR-----VMVKELLEFLESS-D  398 (866)
T ss_pred             eehhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH-----HHHHHHHHHHHhc-c
Confidence            555555555544444333221     134555555555555555555544433211  11     1222334444432 2


Q ss_pred             hhHHHHHHHHHHHhhcCC-hHHH---H---H-------HHHcCChHHHHHHHhcC-----------------------CC
Q psy12594        349 EQLQVAAAWTLGQIGKHS-VDNV---T---A-------LCEENVLSTLLSKITQT-----------------------CV  391 (542)
Q Consensus       349 ~~v~~~a~~~L~~l~~~~-~~~~---~---~-------l~~~~~l~~L~~ll~~~-----------------------~~  391 (542)
                      ++.+...+.-+..++... |+.+   +   .       ++..+++..++.++.+.                       -+
T Consensus       399 ~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is  478 (866)
T KOG1062|consen  399 EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDIS  478 (866)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhh
Confidence            334333333333332110 1000   0   0       01112223333333322                       11


Q ss_pred             ChHHHHHHHHHHHHHHh---h------------CCCchhhHHhhcC-CCCHHHHHHHHHHHHhhCCCC
Q psy12594        392 SDNLKSKCKNALNILIP---K------------CENPKELEQMLLG-NVSEELLASILCAFAKILPCD  443 (542)
Q Consensus       392 ~~~v~~~a~~aL~nl~~---~------------~~~i~~L~~lL~~-~~~~~v~~~~l~~l~~ll~~~  443 (542)
                      .+.+..-|.|+|+....   .            .+.+..|+.++.. .++..+..+++.++.++-...
T Consensus       479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~  546 (866)
T KOG1062|consen  479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF  546 (866)
T ss_pred             hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence            23456678888887641   1            1236677777763 456788889999998886543

>KOG2160|consensus

Probab=99.19  E-value=2.6e-08  Score=92.77  Aligned_cols=187  Identities=18%  Similarity=0.252  Sum_probs=163.2

Q ss_pred             cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHH
Q psy12594         51 ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDS  129 (542)
Q Consensus        51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~  129 (542)
                      .+.+.+-+..|+.-|..++  ++-++...+...|++..++..+.+.+..+|..|+++++..+..+|..+. +++.|+++.
T Consensus        93 ~s~~le~ke~ald~Le~lv--e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~  170 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELV--EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK  170 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHH--HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence            4567888999999999999  8888889999999999999999999999999999999999999999999 999999999


Q ss_pred             HHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594        130 IISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAAFALDGIVKHSPELAESAS  206 (542)
Q Consensus       130 Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~  206 (542)
                      |+..+.+.+ ..+|..|+.++..+.+.++.....+...++...|...+++  .+..+++.++..+..+..........+.
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999998665 6788999999999999999989999999889999999999  4588999999999999987766666666


Q ss_pred             hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594        207 DCDVIPLLIKALNNDEVNVKADAFLCLADIAKD  239 (542)
Q Consensus       207 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  239 (542)
                      ..++...+..+....+.++.+.++.++..+...
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            666667777777777888888888777666543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.18  E-value=1.5e-08  Score=98.50  Aligned_cols=340  Identities=15%  Similarity=0.065  Sum_probs=214.5

Q ss_pred             HhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh----cc-CCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         47 VPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL----TK-QNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L----~~-~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      .+-|++..|.....|+..+..++  ..+      .-.+..|.+++.+    .. +....+..++.++++.|........+
T Consensus       100 l~aL~s~epr~~~~Aaql~aaIA--~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li  171 (858)
T COG5215         100 LRALKSPEPRFCTMAAQLLAAIA--RME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI  171 (858)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHH--Hhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence            34456666777777777777776  221      1133444444443    33 44678899999999998664331112


Q ss_pred             hhc-CChHHHHh-hhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHH----cCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594        122 IED-KDLDSIIS-SLHD-FDPDTRANAALALGGLAKDNKHFAERIVQ----CGALPPLVQILASPQLSLKHAAAFALDGI  194 (542)
Q Consensus       122 ~~~-g~v~~Lv~-lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~nl  194 (542)
                      ... .++-.++. -++. ++..+|..++.+|.+-..   ..+..+-.    .-+++..++.-+.++.+++..|..||..|
T Consensus       172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ki  248 (858)
T COG5215         172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKI  248 (858)
T ss_pred             HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHH
Confidence            222 23333333 3333 357899999999887321   11111111    12355666777888999999999999999


Q ss_pred             hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH----------------HhhchHH-HHH
Q psy12594        195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI----------------ADGATTL-AVE  257 (542)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----------------~~~~~i~-L~~  257 (542)
                      ..-.-+......+........+.++++++++...++..-+.+|....+..-..                .-..++| |++
T Consensus       249 m~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~  328 (858)
T COG5215         249 MMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLS  328 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHH
Confidence            88555555555555555667778889999999999988888887543211111                1135789 999


Q ss_pred             hhcCC-------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH
Q psy12594        258 HLTYP-------HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI  330 (542)
Q Consensus       258 lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  330 (542)
                      +|...       +-.+...|..||--++....+.   +.+ .++..+-+-++++++.-+..|+.++|.+..+..+.+..-
T Consensus       329 LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~  404 (858)
T COG5215         329 LLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTK  404 (858)
T ss_pred             HHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---hHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHh
Confidence            99763       2346666777776665322211   222 233444456778899999999999999988766655555


Q ss_pred             HhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCCh----HHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594        331 IELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVL----STLLSKITQTCVSDNLKSKCKNALNIL  406 (542)
Q Consensus       331 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l----~~L~~ll~~~~~~~~v~~~a~~aL~nl  406 (542)
                      +-...+|.+.....++ .-.++..++|+++.++.+-++   .+-..+-+    ...+.-+.+.   +.+-..++|+..|+
T Consensus       405 ~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~---p~~~~ncsw~~~nl  477 (858)
T COG5215         405 IVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDC---PFRSINCSWRKENL  477 (858)
T ss_pred             hHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhcc---chHHhhhHHHHHhH
Confidence            5568899999888863 458899999999999643222   11122322    2223334432   46788999999999


Q ss_pred             Hh
Q psy12594        407 IP  408 (542)
Q Consensus       407 ~~  408 (542)
                      ..
T Consensus       478 v~  479 (858)
T COG5215         478 VD  479 (858)
T ss_pred             HH
Confidence            64

>KOG1062|consensus

Probab=99.12  E-value=3.2e-08  Score=100.17  Aligned_cols=367  Identities=14%  Similarity=0.201  Sum_probs=210.7

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ...|...++++..++.+|..|+.+..++-  .. ++..+.     +++..-++|.+.+..+-..++..+..+|..+++..
T Consensus       142 dlapeVe~Ll~~~~~~irKKA~Lca~r~i--rK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l  214 (866)
T KOG1062|consen  142 DLAPEVERLLQHRDPYIRKKAALCAVRFI--RKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL  214 (866)
T ss_pred             HhhHHHHHHHhCCCHHHHHHHHHHHHHHH--HcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH
Confidence            34677889999999999999999888887  44 555333     44566666776677777777777777777665555


Q ss_pred             h-HhhcCChHHHHhhhcC---------------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc------------C-ChH
Q psy12594        120 G-LIEDKDLDSIISSLHD---------------FDPDTRANAALALGGLAKDNKHFAERIVQC------------G-ALP  170 (542)
Q Consensus       120 ~-~~~~g~v~~Lv~lL~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~------------g-~i~  170 (542)
                      . +.+  .++.|+..|++               .||.++...++.|.-+...++...+.+-+-            + +-.
T Consensus       215 ~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnA  292 (866)
T KOG1062|consen  215 SYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNA  292 (866)
T ss_pred             HHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhH
Confidence            4 433  55555555431               257777777777777766555444433210            0 001


Q ss_pred             HHHHhcc-----CCCHhHHHHHHHHHHHHhcCCHHHHHHhh----------hCCCh----HHHHHhhcCCCHHHHHHHHH
Q psy12594        171 PLVQILA-----SPQLSLKHAAAFALDGIVKHSPELAESAS----------DCDVI----PLLIKALNNDEVNVKADAFL  231 (542)
Q Consensus       171 ~L~~ll~-----~~~~~~~~~a~~~L~nl~~~~~~~~~~~~----------~~~~i----~~L~~ll~~~~~~~~~~a~~  231 (542)
                      .|.+..+     .++..+|..|+-+|+.+-.....+.+.+.          +..++    ..++.+|+++|..+++.|+.
T Consensus       293 ILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralE  372 (866)
T KOG1062|consen  293 ILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALE  372 (866)
T ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            1111111     12345555555555555443222221110          11111    46778888888888888888


Q ss_pred             HHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCHHHHHHhhhcCCccch
Q psy12594        232 CLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-NLRLANLVVLAGGLDGLLRLIDCNGGYNS  309 (542)
Q Consensus       232 ~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~  309 (542)
                      .+..|...+. .+      ..+. |+..|...+++.+..++.-+..++.. .|+....      ++.+...+.....-++
T Consensus       373 Ls~~lvn~~N-v~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~  439 (866)
T KOG1062|consen  373 LSYALVNESN-VR------VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVN  439 (866)
T ss_pred             HHHHHhcccc-HH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccc
Confidence            8888876642 33      3455 88888888888888888877777643 3443332      3445555555444444


Q ss_pred             HHHHHHHhHhhcCC-hH----HHHHHHhhCchHHHHH-hhcCCChhhHHHHHHHHHHHhhc----C-ChHHHHHHHHcCC
Q psy12594        310 LPAIMALGYMSAQS-EQ----IAEQIIELQGVGSLQT-ILQCPHKEQLQVAAAWTLGQIGK----H-SVDNVTALCEENV  378 (542)
Q Consensus       310 ~~a~~~L~~l~~~~-~~----~~~~~~~~~~l~~L~~-ll~~~~~~~v~~~a~~~L~~l~~----~-~~~~~~~l~~~~~  378 (542)
                      ..+...+..+..+. ++    ....+..     .+.. .+...+.+.+...|.|+||..+.    + +.+....+-++.+
T Consensus       440 ~dv~~nll~LIa~~~~e~~~y~~~rLy~-----a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdi  514 (866)
T KOG1062|consen  440 DDVVNNLLRLIANAFQELHEYAVLRLYL-----ALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDI  514 (866)
T ss_pred             hhhHHHHHHHHhcCCcchhhHHHHHHHH-----HHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHH
Confidence            44443333333221 11    1111111     1111 01112234667789999998751    1 1122223345678


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC-chhhHHhh---cCCCCHHHHHHHHH
Q psy12594        379 LSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN-PKELEQML---LGNVSEELLASILC  434 (542)
Q Consensus       379 l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~-i~~L~~lL---~~~~~~~v~~~~l~  434 (542)
                      +..+..++.+...+..+|..|..||..|..+... .+.+.+++   ..+.+.++.+.+.+
T Consensus       515 vd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~~~elQQRa~E  574 (866)
T KOG1062|consen  515 VDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYKSSLDTELQQRAVE  574 (866)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhcccccHHHHHHHHH
Confidence            8888999988877778898999999998765433 33333333   32456677776654

>KOG2759|consensus

Probab=99.12  E-value=5.7e-08  Score=91.65  Aligned_cols=320  Identities=15%  Similarity=0.137  Sum_probs=222.6

Q ss_pred             CchHHHHhhhcCCC-hHHHHHHHHHHHHhHccCChHHHHHHH-------hcCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy12594         41 NVVDLIVPLLADKV-PSIQHAALATLGKLMCAKHVDIRQEVL-------ERNLVALVLKDLTKQNKHYKKTALHMLTCVA  112 (542)
Q Consensus        41 g~i~~L~~lL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~~i~-------~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~  112 (542)
                      ..+..++.|++..+ ++.....+..+..+.  ..+..+..+.       +.......+.+|..++..+...+.+++..++
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmL--s~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDML--SEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHH--hhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            45667777776543 455556666666666  3222211111       2233667888899999999988999999887


Q ss_pred             cCChhhhhHhhc-CChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHH
Q psy12594        113 QQDERCAGLIED-KDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAA  188 (542)
Q Consensus       113 ~~~~~~~~~~~~-g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~  188 (542)
                      ......-...+. =....|-..+++ .+++....+++||..+.. -+++|..++...++..++..+.+  .+-.+|...+
T Consensus       143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            543222111000 012334444554 557777888899999987 56778999998889999998843  2478999999


Q ss_pred             HHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCh------hhHHHHHhhchHHHHHhhcC
Q psy12594        189 FALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSP------SLASTIADGATTLAVEHLTY  261 (542)
Q Consensus       189 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~L~~lL~~  261 (542)
                      .++.-|+. +|...+.+...+.++.|..++++. ...+.+-++.++.|+....+      +....++..++.+-++.|..
T Consensus       222 fciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~  300 (442)
T KOG2759|consen  222 FCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE  300 (442)
T ss_pred             HHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence            99999998 666777777789999999999965 56799999999999998874      33455666666664444443


Q ss_pred             C---ChhHHHHHHHHHHHH-------hcC--------------C---------hHHHHHHHh--cCCHHHHHHhhhcCC-
Q psy12594        262 P---HGLVQKNAATLLRDM-------CKH--------------N---------LRLANLVVL--AGGLDGLLRLIDCNG-  305 (542)
Q Consensus       262 ~---~~~v~~~a~~~L~~L-------~~~--------------~---------~~~~~~~~~--~~~i~~Lv~lL~~~~-  305 (542)
                      .   |+++....-..-..|       +..              +         .+++..+-+  ...+..|+.+|...+ 
T Consensus       301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D  380 (442)
T KOG2759|consen  301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND  380 (442)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence            3   666554433222222       111              1         122332322  236788899998866 


Q ss_pred             ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594        306 GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH  365 (542)
Q Consensus       306 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  365 (542)
                      |.+..-|+.-||...+..|+....+.+.|+-..+++++.++ ++.|+..|+.|+..+..+
T Consensus       381 p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  381 PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence            66788899999999999999999999999999999999995 579999999998887543

>KOG2160|consensus

Probab=99.09  E-value=2e-08  Score=93.47  Aligned_cols=184  Identities=20%  Similarity=0.230  Sum_probs=152.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q psy12594         96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI  175 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  175 (542)
                      .+.+-+..|+.-|..++..=+....++..|++..++..+++.++.+|+.|+|+|+..+..+|..++.+++.|+.+.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            55777888888888887554344449999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhhch
Q psy12594        176 LASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN--DEVNVKADAFLCLADIAKDSPSLASTIADGAT  252 (542)
Q Consensus       176 l~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  252 (542)
                      +.+++ ..++..|+.+++.+.++.+.....+...++...|...+++  .+..+++.++..+.++..........+...+.
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            98764 6788999999999999998889999889999999999998  57889999999999999876544443433444


Q ss_pred             HH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        253 TL-AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       253 i~-L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                      .. +..+....+.++.+.+..++..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            44 5566556688888888777665553

>KOG1059|consensus

Probab=99.08  E-value=3e-07  Score=92.05  Aligned_cols=215  Identities=14%  Similarity=0.154  Sum_probs=150.6

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      -+-+++||.+..|-+|..|+..+.+++  .. ++..     ...+|.|+.-|.++++.++..|+.+++.|+..+|..-. 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvF--LkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVF--LKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHH--HhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence            345677788888888888888888887  33 3331     23678888888888888888888888888877654333 


Q ss_pred             hhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHH--HHhcC
Q psy12594        122 IEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALD--GIVKH  197 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~--nl~~~  197 (542)
                         ..-|.+.++|-+. +-.+....+..+++|+--.|...+.+     ++++..++.+.. .++...|..++.  ++..+
T Consensus       218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL-----ieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL-----IEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh-----hhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence               2456677777543 45555666777777776666655554     778888888765 566666666553  33433


Q ss_pred             CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                      .++....+  .-+++.|-.++.+.|+.++.-++-+++.+....+....     .--. ++.+|.+.|+.+|-.|+..|..
T Consensus       290 ~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~g  362 (877)
T KOG1059|consen  290 MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLYG  362 (877)
T ss_pred             CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHHH
Confidence            22211111  12346777788899999999999999999988765443     2345 7899999999999999999998


Q ss_pred             HhcC
Q psy12594        277 MCKH  280 (542)
Q Consensus       277 L~~~  280 (542)
                      +...
T Consensus       363 mVsk  366 (877)
T KOG1059|consen  363 MVSK  366 (877)
T ss_pred             Hhhh
Confidence            8743

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.05  E-value=3.1e-08  Score=95.64  Aligned_cols=227  Identities=18%  Similarity=0.222  Sum_probs=162.8

Q ss_pred             chHHHHhhhcC--CChHHHHHHHHHHHHhHccCC-hHHHHHHHh------cCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy12594         42 VVDLIVPLLAD--KVPSIQHAALATLGKLMCAKH-VDIRQEVLE------RNLVALVLKDLTKQNKHYKKTALHMLTCVA  112 (542)
Q Consensus        42 ~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~------~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~  112 (542)
                      ....++.+|+.  .++++....+..+..+.  .+ +...+.+..      ...+.++++++.+++..++..++.+|..+.
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll--~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll  133 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLL--SDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL  133 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHH--H-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHH--hcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            35566666653  67899999999999998  44 333333333      236788999888999999999999999998


Q ss_pred             cCChhhhhHhhcCChHHHHhhhcC----CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc------cC-CCH
Q psy12594        113 QQDERCAGLIEDKDLDSIISSLHD----FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL------AS-PQL  181 (542)
Q Consensus       113 ~~~~~~~~~~~~g~v~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll------~~-~~~  181 (542)
                      ...+........+.++.+++.+.+    .+..++..++.+|.++.. .+.+|..+.+.++++.+..++      .. .+.
T Consensus       134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred             HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence            765444442224567778877765    345677889999999986 788899999999999999999      22 238


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh-hHHHHHhhchHHHHHhh
Q psy12594        182 SLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPS-LASTIADGATTLAVEHL  259 (542)
Q Consensus       182 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~L~~lL  259 (542)
                      .++++++.+++-|+. +++....+...+.++.|..+++. ...++.+-++.+|.|+....++ +...++..++++++..|
T Consensus       213 Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L  291 (312)
T PF03224_consen  213 QLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL  291 (312)
T ss_dssp             HHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence            899999999999999 78888889888999999999984 4788999999999999987654 77788888888855555


Q ss_pred             cCC---ChhHHHHHHH
Q psy12594        260 TYP---HGLVQKNAAT  272 (542)
Q Consensus       260 ~~~---~~~v~~~a~~  272 (542)
                      ...   |+++....-.
T Consensus       292 ~~rk~~Dedl~edl~~  307 (312)
T PF03224_consen  292 SERKWSDEDLTEDLEF  307 (312)
T ss_dssp             HSS--SSHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHH
Confidence            443   7887765543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4413|consensus

Probab=99.03  E-value=1.5e-06  Score=79.29  Aligned_cols=361  Identities=15%  Similarity=0.126  Sum_probs=238.0

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-h--HH--HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-V--DI--RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD  115 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~--~~--~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~  115 (542)
                      +..|.|-.-|..++..++..++..++.+.  ++ +  ..  ...++..+.++.+++++..++.++...|...+.+++...
T Consensus        82 nlmpdLQrGLiaddasVKiLackqigcil--EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp  159 (524)
T KOG4413|consen   82 NLMPDLQRGLIADDASVKILACKQIGCIL--EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP  159 (524)
T ss_pred             hhhHHHHhcccCCcchhhhhhHhhhhHHH--hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH
Confidence            34455555566788899999999999998  65 2  22  234457899999999999999999999999999999776


Q ss_pred             hhhhhHhhcCChHHH--HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHHH
Q psy12594        116 ERCAGLIEDKDLDSI--ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-PQLSLKHAAAFALD  192 (542)
Q Consensus       116 ~~~~~~~~~g~v~~L--v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~  192 (542)
                      .....+.+......+  .++-...+.-.|......+..+.+-++......-++|.+..|..=|+. .+.-++..++....
T Consensus       160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt  239 (524)
T KOG4413|consen  160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT  239 (524)
T ss_pred             HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence            555556655554433  334344455667777778888888888888888899999999888887 56778888888888


Q ss_pred             HHhcCCHHHHHHhhhCCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChh---hHHHHHh--hchHH-HHHhhcCCCh
Q psy12594        193 GIVKHSPELAESASDCDVIPLLIKALNN--DEVNVKADAFLCLADIAKDSPS---LASTIAD--GATTL-AVEHLTYPHG  264 (542)
Q Consensus       193 nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~--~~~i~-L~~lL~~~~~  264 (542)
                      .++. ....++.+.+.|.|+.+..++..  ++|.-.-.+....+.+-....-   ..+.+.+  -..+. .+.+....|+
T Consensus       240 eLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDp  318 (524)
T KOG4413|consen  240 ELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDP  318 (524)
T ss_pred             HHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCc
Confidence            8887 55677888889999999999983  3554444455555554433210   1111222  12344 5677778899


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHhcC--CHHHHHHhhhcCCcc-chHHHHHHHhHhhcC---ChH----------HHH
Q psy12594        265 LVQKNAATLLRDMCKHNLRLANLVVLAG--GLDGLLRLIDCNGGY-NSLPAIMALGYMSAQ---SEQ----------IAE  328 (542)
Q Consensus       265 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~---~~~----------~~~  328 (542)
                      +....|+.++..|..+ .+..+.+...|  ...+++.-..+.+.. -+..++++|.+++..   .++          .+.
T Consensus       319 daieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrc  397 (524)
T KOG4413|consen  319 DAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRC  397 (524)
T ss_pred             hHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHH
Confidence            9999999999999754 44445455444  355566555554443 567788888888742   111          111


Q ss_pred             HHHh-------hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcC-CCChHHHHHHH
Q psy12594        329 QIIE-------LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT-CVSDNLKSKCK  400 (542)
Q Consensus       329 ~~~~-------~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~v~~~a~  400 (542)
                      .+.+       ..-+..+..+++.+ -++++-++.+++..++...=.....+.+.+++..+.+--... ....+.|.+++
T Consensus       398 lifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYecc  476 (524)
T KOG4413|consen  398 LIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECC  476 (524)
T ss_pred             HHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHH
Confidence            1111       13345566777764 468999999999999654333333333556666555433322 11234556666


Q ss_pred             HHHHHH
Q psy12594        401 NALNIL  406 (542)
Q Consensus       401 ~aL~nl  406 (542)
                      .||.+-
T Consensus       477 KAiaea  482 (524)
T KOG4413|consen  477 KAIAEA  482 (524)
T ss_pred             HHHHHH
Confidence            666653

>KOG0213|consensus

Probab=98.93  E-value=1.7e-07  Score=93.98  Aligned_cols=349  Identities=16%  Similarity=0.111  Sum_probs=209.3

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCC--HHHHHHHHHHHHHHhcC--Chh
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQN--KHYKKTALHMLTCVAQQ--DER  117 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~--~~~~~~a~~~L~~l~~~--~~~  117 (542)
                      +..++.=++++.+..|.-.+.+..++.+.-. .+. ..-.+...+..++..+.+++  ..+-.....++.+-...  .+.
T Consensus       718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~di-derleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy  796 (1172)
T KOG0213|consen  718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADI-DERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY  796 (1172)
T ss_pred             HHHHhhhhccccHHHHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence            3444555677778777777777777763222 111 11112334445555555433  22333344343332111  111


Q ss_pred             hhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHH--HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHh
Q psy12594        118 CAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF--AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV  195 (542)
Q Consensus       118 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~  195 (542)
                      ..     .++..++..|++..+.+|..|+..++.++.--..+  -+.+...|.  .|.+.|..+.+++.-..+.++..|.
T Consensus       797 lp-----qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  797 LP-----QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             hH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHH
Confidence            11     24567788899999999999999999887321111  233334443  4788888888888877777776665


Q ss_pred             cCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594        196 KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL---ASTIADGATTL-AVEHLTYPHGLVQKNAA  271 (542)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~-L~~lL~~~~~~v~~~a~  271 (542)
                      ..-.-....---.+.+|.|..+|++.+..++++++..++.+|...++.   ++.+   .+.- |+++|+..+.++|+++.
T Consensus       870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~  946 (1172)
T KOG0213|consen  870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAV  946 (1172)
T ss_pred             HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            421100011111578899999999999999999999999999987753   3333   3455 99999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhH
Q psy12594        272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQL  351 (542)
Q Consensus       272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  351 (542)
                      ..+..+++.-       --..++..|+.-|+..+-..+....-+|+-.+..+..       ..++|.|++=-.. ++..+
T Consensus       947 nTfG~IakaI-------GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrt-Pe~nV 1011 (1172)
T KOG0213|consen  947 NTFGYIAKAI-------GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRT-PEANV 1011 (1172)
T ss_pred             hhhhHHHHhc-------CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccC-chhHH
Confidence            9999998632       1112344555555555444444333344333322211       1466666665555 34577


Q ss_pred             HHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC---CCchhhHHhhc
Q psy12594        352 QVAAAWTLGQIGKHSVDN-VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC---ENPKELEQMLL  421 (542)
Q Consensus       352 ~~~a~~~L~~l~~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~---~~i~~L~~lL~  421 (542)
                      |.-.+++++.+...-.+. ...+  .-+.|.|-+.|.+.+  .--|..|+.++..+.-.+   +....++.||+
T Consensus      1012 QnGVLkalsf~FeyigemskdYi--yav~PlleDAlmDrD--~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1012 QNGVLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRD--LVHRQTAMNVIKHLALGVPGTGCEDALIHLLN 1081 (1172)
T ss_pred             HHhHHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhcccc--HHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Confidence            777777777664321111 1111  235688888888874  366778888888886543   34555555555

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.92  E-value=9.4e-08  Score=92.28  Aligned_cols=229  Identities=15%  Similarity=0.186  Sum_probs=159.0

Q ss_pred             hHHHHHhccC--CCHhHHHHHHHHHHHHhcCCHHHHHHhhh------CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594        169 LPPLVQILAS--PQLSLKHAAAFALDGIVKHSPELAESASD------CDVIPLLIKALNNDEVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       169 i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  240 (542)
                      ...++.+|+.  ++.++.+.++..+..+...++.....+..      .....++++++..+|..++..++..|..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            4455555543  46889999999999999988766555543      225788888898899999999999999999877


Q ss_pred             hhhHHHHHhhchHH-HHHhhcCC----ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh-----c--CCccc
Q psy12594        241 PSLASTIADGATTL-AVEHLTYP----HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID-----C--NGGYN  308 (542)
Q Consensus       241 ~~~~~~~~~~~~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-----~--~~~~~  308 (542)
                      +....... .+.++ +++.+.+.    +..++..++.+|.+|. ..+.....+.+.++++.+...+.     +  .+..+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            54433322 45667 77777653    5667899999999998 45556666778999999999992     2  22346


Q ss_pred             hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHHHh
Q psy12594        309 SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD-NVTALCEENVLSTLLSKIT  387 (542)
Q Consensus       309 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~l~~L~~ll~  387 (542)
                      +..++.++.-++ .+++....+.+.+.++.|.++++....+.+.+-+..++.|+....++ ....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            778888888664 55777788888899999999999988889999999999999877654 7777888888888777666


Q ss_pred             cCCCChHHHHHHH
Q psy12594        388 QTCVSDNLKSKCK  400 (542)
Q Consensus       388 ~~~~~~~v~~~a~  400 (542)
                      ..-.++|+...-.
T Consensus       294 rk~~Dedl~edl~  306 (312)
T PF03224_consen  294 RKWSDEDLTEDLE  306 (312)
T ss_dssp             S--SSHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            5545666766443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>TIGR02270 conserved hypothetical protein

Probab=98.90  E-value=3.1e-07  Score=90.55  Aligned_cols=242  Identities=17%  Similarity=0.064  Sum_probs=171.8

Q ss_pred             CCchHHHHhhhc-CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594         40 LNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        40 ~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      ..+++.++..+. ++++.++..++.++....            ....+..+++.|.+.++.++..++..|+.+-.     
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~------------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----  115 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLAQE------------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG-----  115 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhccC------------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-----
Confidence            346777888884 566777776666554333            11237888999998888899999988876542     


Q ss_pred             hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                           ....+.|+.+|.+.++.+|..++.++.....            ...+.+..+|+++++.++..|+.+|+.+..  
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--  176 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHEDALVRAAALRALGELPR--  176 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--
Confidence                 2467889999999999999888776665322            225678888999999999999999998876  


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                               ...++.|...+.+.++.+|..+++++..+..  +         .... +..+...........+...+...
T Consensus       177 ---------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       177 ---------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                     4566778888999999999999999977633  2         2233 44444444433333333333322


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW  357 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  357 (542)
                        ..         ...++.|..+++.+.  ++..++.++|.+...           ..++.|+..+...   .++..|..
T Consensus       237 --~~---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~---~~aR~A~e  289 (410)
T TIGR02270       237 --GG---------PDAQAWLRELLQAAA--TRREALRAVGLVGDV-----------EAAPWCLEAMREP---PWARLAGE  289 (410)
T ss_pred             --Cc---------hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc-----------chHHHHHHHhcCc---HHHHHHHH
Confidence              11         245667788888765  899999999976433           5788888888763   48999999


Q ss_pred             HHHHhhc
Q psy12594        358 TLGQIGK  364 (542)
Q Consensus       358 ~L~~l~~  364 (542)
                      ++..|+-
T Consensus       290 A~~~ItG  296 (410)
T TIGR02270       290 AFSLITG  296 (410)
T ss_pred             HHHHhhC
Confidence            9999953

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1789|consensus

Probab=98.89  E-value=8.1e-07  Score=92.23  Aligned_cols=355  Identities=15%  Similarity=0.158  Sum_probs=225.4

Q ss_pred             HHHHHHHhcC-CCCchHHHHh----CCchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594         20 FVQTMSAFAD-KPSTIHFLKD----LNVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL   93 (542)
Q Consensus        20 ~~~~l~~l~~-~~~~~~~l~~----~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L   93 (542)
                      .+.+|.|+-+ +|+....|..    -|-.+.+..++.+ .++.++..|+..+..+.  .+.++.+.+...+.+..|+.+|
T Consensus      1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T--an~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT--ANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred             HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh--cccHHHHHHHhhhHHHHHHHHH
Confidence            4667777766 6655554432    3667777888865 57899999999999999  8888999999999888888887


Q ss_pred             ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCC---hHHHHHHHHcCCh
Q psy12594         94 TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDN---KHFAERIVQCGAL  169 (542)
Q Consensus        94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i  169 (542)
                       ++-|..|..++.+|..+++...-...-.++|++..+..++... .+..|.+++..++.+..+.   |..+-.+++. .-
T Consensus      1823 -HS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF-LP 1900 (2235)
T KOG1789|consen 1823 -HSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF-LP 1900 (2235)
T ss_pred             -hcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh-ch
Confidence             4567889999999999997775555578889888888887654 5899999999999987532   2222222211 01


Q ss_pred             HHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH------HHhhhCCChHH-HHHhhcC--CCHH----HHHHHHH-----
Q psy12594        170 PPLVQILASPQLSLKHAAAFALDGIVKHSPELA------ESASDCDVIPL-LIKALNN--DEVN----VKADAFL-----  231 (542)
Q Consensus       170 ~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~------~~~~~~~~i~~-L~~ll~~--~~~~----~~~~a~~-----  231 (542)
                      ..++..+++. |   +++..++..-.. +|+..      ..+  ++.+.. ..++.+.  .++.    +-++.+.     
T Consensus      1901 ~~f~d~~RD~-P---EAaVH~fE~T~E-nPELiWn~~~r~kv--S~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~ 1973 (2235)
T KOG1789|consen 1901 EIFADSLRDS-P---EAAVHMFESTSE-NPELIWNEVTRQKV--SGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEAD 1973 (2235)
T ss_pred             HHHHHHHhcC-H---HHHHHHHhccCC-CcccccCHhHHHHH--HHHHHHHHHHHHHHhccCCcccccCchhhcchhhhc
Confidence            2233344432 2   444444443333 33221      111  111211 1122211  0110    0011000     


Q ss_pred             --------HHHHHhcCCh---hhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHH
Q psy12594        232 --------CLADIAKDSP---SLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGL  297 (542)
Q Consensus       232 --------~L~~l~~~~~---~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L  297 (542)
                              .+..+.....   ...+.+. .+.++ +.+++..+  ..........++..|.++.|..+..+-.-|.+|.+
T Consensus      1974 ~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL-~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~ 2052 (2235)
T KOG1789|consen 1974 KECAVGGSINREFVVGPGFNLRHPKLFL-TELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKF 2052 (2235)
T ss_pred             cCcccchhhhHHHhhCCCCcccCHHHHH-HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHH
Confidence                    0111111100   0111222 25666 77777766  34455555666777778888888777777999999


Q ss_pred             HHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC-hHHHHHHHHc
Q psy12594        298 LRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS-VDNVTALCEE  376 (542)
Q Consensus       298 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~  376 (542)
                      +..+...+..+-..|++.|+.|+.+ .-.++.+.....+..++..+....+  ..-.|+.+|-.+...+ .+.....++.
T Consensus      2053 ~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~~--~~GLA~EalkR~~~r~~~eLVAQ~LK~ 2129 (2235)
T KOG1789|consen 2053 CTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQPS--LMGLAAEALKRLMKRNTGELVAQMLKC 2129 (2235)
T ss_pred             HHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcch--HHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence            9999999988889999999999754 4556666666777778888877543  4446888887776543 4556667788


Q ss_pred             CChHHHHHHHhcC
Q psy12594        377 NVLSTLLSKITQT  389 (542)
Q Consensus       377 ~~l~~L~~ll~~~  389 (542)
                      |.+|.|+.+|...
T Consensus      2130 gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2130 GLVPYLLQLLDSS 2142 (2235)
T ss_pred             CcHHHHHHHhccc
Confidence            8889988888754

>TIGR02270 conserved hypothetical protein

Probab=98.85  E-value=8.3e-07  Score=87.56  Aligned_cols=240  Identities=19%  Similarity=0.138  Sum_probs=172.9

Q ss_pred             CcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594         84 NLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER  162 (542)
Q Consensus        84 ~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (542)
                      ..++.++..|. .++..++..++..+...  ..        ..++..|+..|.+.++.++..++.+|+.+-.  +     
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~-----  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--ED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R-----  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h-----
Confidence            35677888885 46677777665554322  11        1248899999999999999999999987643  1     


Q ss_pred             HHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594        163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS  242 (542)
Q Consensus       163 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  242 (542)
                          ...+.|+.+++++++.++..++.+++....            ...+.+..++++.++.++..++.+|+.+...   
T Consensus       117 ----~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---  177 (410)
T TIGR02270       117 ----QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHEDALVRAAALRALGELPRR---  177 (410)
T ss_pred             ----HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence                237889999999999999988877776332            2346888999999999999999999988654   


Q ss_pred             hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                              ..++ |...+.+.++.|+..+++++..+-.  +         ...+.+..+..............++...  
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~--  236 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA--  236 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC--
Confidence                    3455 7788899999999999999977642  2         2233444444444444444444444332  


Q ss_pred             CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHH
Q psy12594        322 QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKN  401 (542)
Q Consensus       322 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~  401 (542)
                      +.+         ..++.|..+++.+   .++..++++++.+  +++.         .++.|+..+.+.    .++..|..
T Consensus       237 ~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~l--g~p~---------av~~L~~~l~d~----~~aR~A~e  289 (410)
T TIGR02270       237 GGP---------DAQAWLRELLQAA---ATRREALRAVGLV--GDVE---------AAPWCLEAMREP----PWARLAGE  289 (410)
T ss_pred             Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHc--CCcc---------hHHHHHHHhcCc----HHHHHHHH
Confidence            211         4677788888773   4899999999988  4444         678899999865    59999999


Q ss_pred             HHHHHH
Q psy12594        402 ALNILI  407 (542)
Q Consensus       402 aL~nl~  407 (542)
                      ++..+.
T Consensus       290 A~~~It  295 (410)
T TIGR02270       290 AFSLIT  295 (410)
T ss_pred             HHHHhh
Confidence            999886

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0212|consensus

Probab=98.84  E-value=4.4e-07  Score=88.50  Aligned_cols=388  Identities=12%  Similarity=0.092  Sum_probs=230.8

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-Chhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ-DERC  118 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~  118 (542)
                      ++.+|+.+....+.|..+|..|+..|.+++.....+....  ....+..+.++..+.+..++. ++..+-.+-.. ..+.
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTES  159 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccc
Confidence            5678888888889999999999999999992221111111  122333444444444444443 34454444322 1111


Q ss_pred             h-hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594        119 A-GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV-QCGALPPLVQILASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       119 ~-~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~  196 (542)
                      . .+.-.+.+|.|-+-+...++..|...+.-|..+-. .|. .+.+- -..+++-|..+|.+++.++|..+-.++.++-.
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            1 23333556666666667788888887776666654 222 12221 12457778899999999999888777766543


Q ss_pred             C---CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChh-HHHHHH
Q psy12594        197 H---SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGL-VQKNAA  271 (542)
Q Consensus       197 ~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~-v~~~a~  271 (542)
                      .   +|...   --...++.++.-+.++++.++..|+.-+..+..-.+ ..-...-.+++. ++.++.++++. ++..+.
T Consensus       238 eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~  313 (675)
T KOG0212|consen  238 EIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILPCLSDTEEMSIKEYAQ  313 (675)
T ss_pred             HHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence            1   23221   113567889999999999999988777777666543 222334467788 88888888653 444333


Q ss_pred             ---HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh
Q psy12594        272 ---TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK  348 (542)
Q Consensus       272 ---~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  348 (542)
                         ..+..++.......+ +--...++.+..++.++....+..++.-+..+-...+... ........+.|+.-|.+.+ 
T Consensus       314 ~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~s-  390 (675)
T KOG0212|consen  314 MVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRS-  390 (675)
T ss_pred             HHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCch-
Confidence               234444432221111 1112457788889999998899988876666644433322 2334467888888888855 


Q ss_pred             hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH---HhhCCCchhhHHhhcCCCC
Q psy12594        349 EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL---IPKCENPKELEQMLLGNVS  425 (542)
Q Consensus       349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl---~~~~~~i~~L~~lL~~~~~  425 (542)
                      +.+...++..+.+++..+... ..   -.++..|+++....  ..-++..+...+..+   +....+...+..+|.+..+
T Consensus       391 d~vvl~~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~n  464 (675)
T KOG0212|consen  391 DEVVLLALSLLASICSSSNSP-NL---RKFLLSLLEMFKED--TKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREEN  464 (675)
T ss_pred             hHHHHHHHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhh--hHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhcccc
Confidence            488889999999997654331 00   11233344444433  123445555554444   3333345667777763344


Q ss_pred             HHHHHHHHHHHHhhCCCChh
Q psy12594        426 EELLASILCAFAKILPCDPV  445 (542)
Q Consensus       426 ~~v~~~~l~~l~~ll~~~~~  445 (542)
                      -+.......+|..++-..++
T Consensus       465 l~FAstMV~~Ln~iLlTStE  484 (675)
T KOG0212|consen  465 LKFASTMVQALNTILLTSTE  484 (675)
T ss_pred             chHHHHHHHHHHhhhcccHH
Confidence            46777777777777666543

>KOG3678|consensus

Probab=98.82  E-value=5.5e-07  Score=85.81  Aligned_cols=272  Identities=16%  Similarity=0.146  Sum_probs=189.7

Q ss_pred             chHHHHhCCchHHHHhhhcCCCh--HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHH
Q psy12594         33 TIHFLKDLNVVDLIVPLLADKVP--SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLT  109 (542)
Q Consensus        33 ~~~~l~~~g~i~~L~~lL~s~~~--~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~  109 (542)
                      .+..++..|++..|+.++.+.+.  .+|..|...|..+..   .++++.+...| +..++.+.+ .+.++..+..+.+|.
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~---aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~  247 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV---AENRDRVARIG-LGVILNLAKEREPVELARSVAGILE  247 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh---hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence            44567788999999999988764  569999999998873   24455555555 445555544 366888999999999


Q ss_pred             HHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh-cCChHHHHHHHHcCChHHHHHhccCCCHhHHHHH
Q psy12594        110 CVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLA-KDNKHFAERIVQCGALPPLVQILASPQLSLKHAA  187 (542)
Q Consensus       110 ~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a  187 (542)
                      ++..++++... ++..|++..++-..+..+|.+...++.+|+|++ ......++.+++..+-+.|.-+..+.+.-++..|
T Consensus       248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A  327 (832)
T KOG3678|consen  248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA  327 (832)
T ss_pred             HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence            99999888777 999999999999999999999999999999988 4456678889999888999988888888899999


Q ss_pred             HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhH
Q psy12594        188 AFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLV  266 (542)
Q Consensus       188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v  266 (542)
                      +.+++.|+. +.+.-..+-.+|.+..+-.++..-|+.-          ++++..+..+ -....-++ |+.+|.+..-+.
T Consensus       328 ClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EA  395 (832)
T KOG3678|consen  328 CLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEA  395 (832)
T ss_pred             HHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHHHHhhhhhhcchhhh
Confidence            999999998 5666666766777665555555545432          1222111111 11124566 888888664444


Q ss_pred             HHHHHHHHHHHhc--CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        267 QKNAATLLRDMCK--HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       267 ~~~a~~~L~~L~~--~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                      +.-++.-|..=+.  ......+.+.+-|.|+.|-++..+++.....-|-.+|..+.
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            4433332221111  11222344556788999999888877654444555554443

>KOG3678|consensus

Probab=98.82  E-value=8.9e-07  Score=84.45  Aligned_cols=158  Identities=14%  Similarity=0.167  Sum_probs=133.2

Q ss_pred             HhhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcC
Q psy12594        121 LIEDKDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~  197 (542)
                      +...|++..|++++..++  ..+|.++.+.|..+..  .++++.+...| ...++.+.+.. .+++++..+.+|.++-.|
T Consensus       176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence            445689999999999987  5669999999998874  45677787777 55555555543 488999999999999999


Q ss_pred             CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594        198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR  275 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~  275 (542)
                      +.+.+..+++.|+++.++-.++..++.+.++|+-+|+|++-+. ...+..+++..+.+ |+.+..+.|+-.+.+||-+..
T Consensus       253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~  332 (832)
T KOG3678|consen  253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVA  332 (832)
T ss_pred             hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998754 34567888888889 999888889999999999998


Q ss_pred             HHhcCC
Q psy12594        276 DMCKHN  281 (542)
Q Consensus       276 ~L~~~~  281 (542)
                      -++...
T Consensus       333 vlat~K  338 (832)
T KOG3678|consen  333 VLATNK  338 (832)
T ss_pred             hhhhhh
Confidence            887654

>KOG0212|consensus

Probab=98.80  E-value=1.3e-06  Score=85.20  Aligned_cols=362  Identities=17%  Similarity=0.100  Sum_probs=219.0

Q ss_pred             HhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCC
Q psy12594         47 VPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD  126 (542)
Q Consensus        47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~  126 (542)
                      -.+..+.+..-+..++..+...+-.-..+...  .-.+.+++++.++.+++..+|..|+..+.|++..........-..+
T Consensus        49 ~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~--Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~i  126 (675)
T KOG0212|consen   49 GDYAYSPHANMRKGGLIGLAAVAIALGIKDAG--YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEI  126 (675)
T ss_pred             HHhccCcccccccchHHHHHHHHHHhccccHH--HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHH
Confidence            34555655555555554444443112222212  3456889999999999999999999999998754322111223345


Q ss_pred             hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594        127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE-RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA  205 (542)
Q Consensus       127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  205 (542)
                      ...+.++..+.+..++..| ..+-.+..+-..-+. .+.-.+++|.|-.-+-..++..|...+.-|..|-. .|.....-
T Consensus       127 FdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~  204 (675)
T KOG0212|consen  127 FDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMIS  204 (675)
T ss_pred             HHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHh
Confidence            6677777777777766543 223333211000000 12212345555555555678888888777776655 33222221


Q ss_pred             hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCC
Q psy12594        206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD---SPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHN  281 (542)
Q Consensus       206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~  281 (542)
                      .-...++.|..+|.++++++|..+-.+++++-..   +|..   +.-...++ ++..++++++.++..|+.-+..+..-.
T Consensus       205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~  281 (675)
T KOG0212|consen  205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP  281 (675)
T ss_pred             cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence            2245678899999999999998887777766432   2211   12245678 999999999999999988777776554


Q ss_pred             hHHHHHHHhcCCHHHHHHhhhcCCcc-chHHHHHHHh---HhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594        282 LRLANLVVLAGGLDGLLRLIDCNGGY-NSLPAIMALG---YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW  357 (542)
Q Consensus       282 ~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~~~a~~~L~---~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  357 (542)
                      +...- ..-.|++..++.++.+..+. ++..+...-+   .++.. +...+.+--...+.++...+.++. .+.|.+++.
T Consensus       282 g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~-~~~~~~id~~~ii~vl~~~l~~~~-~~tri~~L~  358 (675)
T KOG0212|consen  282 GRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS-ERLKEEIDYGSIIEVLTKYLSDDR-EETRIAVLN  358 (675)
T ss_pred             Ccchh-hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh-hhhccccchHHHHHHHHHHhhcch-HHHHHHHHH
Confidence            33221 23357777888888877664 5544443322   22222 111111111246778888888854 578888877


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC---CCchhhHHhhc
Q psy12594        358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC---ENPKELEQMLL  421 (542)
Q Consensus       358 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~---~~i~~L~~lL~  421 (542)
                      -+..+-...|. ....-....++.|+.-|.++  +++|-..+...+.++....   +..+.+..||+
T Consensus       359 Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~--sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~  422 (675)
T KOG0212|consen  359 WIILLYHKAPG-QLLVHNDSIFLTLLKTLSDR--SDEVVLLALSLLASICSSSNSPNLRKFLLSLLE  422 (675)
T ss_pred             HHHHHHhhCcc-hhhhhccHHHHHHHHhhcCc--hhHHHHHHHHHHHHHhcCcccccHHHHHHHHHH
Confidence            77777444443 23333457899999999987  5689999999999997653   23445555554

>KOG0213|consensus

Probab=98.76  E-value=1.7e-06  Score=87.04  Aligned_cols=360  Identities=13%  Similarity=0.131  Sum_probs=194.0

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      ++.+|++-+++.....-..-+.+++-|....+++....+ ...++-.+++-..+++.+.++-.+.++...|....--...
T Consensus       595 VlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yy-Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y  673 (1172)
T KOG0213|consen  595 VLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYY-TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAY  673 (1172)
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHh-HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHH
Confidence            455566666555555555555666666622223332222 2234445566667788999999999999888654322334


Q ss_pred             hhcCChHHHHhhhcCC-------C-HHHHHHHHH-------------HHHHhhcCChHHHHHHHHcCChHHHHHhccCCC
Q psy12594        122 IEDKDLDSIISSLHDF-------D-PDTRANAAL-------------ALGGLAKDNKHFAERIVQCGALPPLVQILASPQ  180 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~-------~-~~~~~~a~~-------------~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~  180 (542)
                      +....+|.+.......       + ..+...+..             .+..+-.+++.+++...  +.+..++..+...+
T Consensus       674 ~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~--etv~ri~~~lg~~d  751 (1172)
T KOG0213|consen  674 IRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVA--ETVSRIVGRLGAAD  751 (1172)
T ss_pred             HhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHH--HHHHHHHhcccccc
Confidence            4445666665544221       1 111111111             11112222233332222  12333333333221


Q ss_pred             --HhHHHHHHHHHHH-HhcCCHHHH----------HHhh------hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594        181 --LSLKHAAAFALDG-IVKHSPELA----------ESAS------DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP  241 (542)
Q Consensus       181 --~~~~~~a~~~L~n-l~~~~~~~~----------~~~~------~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  241 (542)
                        ..+.+.-...+.+ +...+.+..          ..+.      -..++..++..|.++++.+|.+++..++.++..-.
T Consensus       752 iderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlk  831 (1172)
T KOG0213|consen  752 IDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLK  831 (1172)
T ss_pred             ccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence              1111111111111 111110000          0000      01234456677888999999999999999875432


Q ss_pred             hhHH-HHHhhchHHHHHhhcCCChhHHHHHHHHHHHHhcCC--hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594        242 SLAS-TIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHN--LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY  318 (542)
Q Consensus       242 ~~~~-~~~~~~~i~L~~lL~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~  318 (542)
                      .+.+ .+..+-++-|...|....+++.-..+.++..++..-  .....-  -.+.+|+|...|++...+++.+++..+|.
T Consensus       832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP--i~dllPrltPILknrheKVqen~IdLvg~  909 (1172)
T KOG0213|consen  832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP--IKDLLPRLTPILKNRHEKVQENCIDLVGT  909 (1172)
T ss_pred             hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC--hhhhcccchHhhhhhHHHHHHHHHHHHHH
Confidence            2221 122222222777888888999888888877775321  000000  14789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC--ChHHHHH----------------------HH
Q psy12594        319 MSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH--SVDNVTA----------------------LC  374 (542)
Q Consensus       319 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~----------------------l~  374 (542)
                      ++...++....---..+.--|+++|+..+ ..+|.+|..++|.|+..  ..+....                      +.
T Consensus       910 IadrgpE~v~aREWMRIcfeLlelLkahk-K~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVa  988 (1172)
T KOG0213|consen  910 IADRGPEYVSAREWMRICFELLELLKAHK-KEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA  988 (1172)
T ss_pred             HHhcCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhh
Confidence            99876654321111123334677887754 58999999999988632  1111111                      11


Q ss_pred             H-cC---ChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        375 E-EN---VLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       375 ~-~~---~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      + ++   ++|.|++-...+  +..||.....+++-+.+.
T Consensus       989 E~c~pFtVLPalmneYrtP--e~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen  989 ETCGPFTVLPALMNEYRTP--EANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred             hhcCchhhhHHHHhhccCc--hhHHHHhHHHHHHHHHHH
Confidence            2 22   455555555554  457888888888888654

>KOG4413|consensus

Probab=98.75  E-value=3.9e-05  Score=70.34  Aligned_cols=380  Identities=16%  Similarity=0.156  Sum_probs=236.5

Q ss_pred             HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh--hhhh---HhhcCChHHH
Q psy12594         56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE--RCAG---LIEDKDLDSI  130 (542)
Q Consensus        56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~--~~~~---~~~~g~v~~L  130 (542)
                      +....++.+|.+|.  ...+...  ...+..+.|-.-|..++..++..++..++.+..+.+  ....   ++..+.++.+
T Consensus        58 ekttlcVscLERLf--kakegah--lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkli  133 (524)
T KOG4413|consen   58 EKTTLCVSCLERLF--KAKEGAH--LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI  133 (524)
T ss_pred             chhhhHHHHHHHHH--hhccchh--hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH
Confidence            34445778888887  3311111  122355666666778899999999999988876544  2222   5688999999


Q ss_pred             HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH--HHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC
Q psy12594        131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPL--VQILASPQLSLKHAAAFALDGIVKHSPELAESASDC  208 (542)
Q Consensus       131 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L--~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~  208 (542)
                      +..+..+|.++-..|...+..++. .+.--..+.++...+.+  ..+.-..+.-.|......+..+.+-+++.......+
T Consensus       134 ldcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkS  212 (524)
T KOG4413|consen  134 LDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKS  212 (524)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhh
Confidence            999999999999999999999997 44445666666655433  333333455677788888999999899999999999


Q ss_pred             CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHhcCChHH
Q psy12594        209 DVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMCKHNLRL  284 (542)
Q Consensus       209 ~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~  284 (542)
                      |.+..|..-++. .|.-++..++.....|+... ..++.+.+.+++. +.+++...  ++--+..+.-.+..+-....-.
T Consensus       213 GLldlLeaElkGteDtLVianciElvteLaete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaim  291 (524)
T KOG4413|consen  213 GLLDLLEAELKGTEDTLVIANCIELVTELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIM  291 (524)
T ss_pred             hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHh
Confidence            999999888875 56778889999999998765 4667777888899 88888765  4444443444444333221100


Q ss_pred             ---HHHHHh--cCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCc--hHHH-HHhhcCCChhhHHHHHH
Q psy12594        285 ---ANLVVL--AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG--VGSL-QTILQCPHKEQLQVAAA  356 (542)
Q Consensus       285 ---~~~~~~--~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~--l~~L-~~ll~~~~~~~v~~~a~  356 (542)
                         .+.+.+  .-.++...+++...++..+..|+-++|.+... .+..+.+.+.|-  ...+ ...... +...-+..+.
T Consensus       292 dvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn-teGadlllkTgppaaehllarafdq-nahakqeaai  369 (524)
T KOG4413|consen  292 DVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQ-NAHAKQEAAI  369 (524)
T ss_pred             hcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcc-cccchHHHHH
Confidence               011111  12455667778889999999999999987544 445555555442  2233 333333 2224566788


Q ss_pred             HHHHHhhcC---ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC--CCchhhHHhhcCCCCHHHHHH
Q psy12594        357 WTLGQIGKH---SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC--ENPKELEQMLLGNVSEELLAS  431 (542)
Q Consensus       357 ~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~--~~i~~L~~lL~~~~~~~v~~~  431 (542)
                      ++|.+++..   .+++                ..++.  .+.+..+.| .....+..  +-+..+..+++ ...+++...
T Consensus       370 haLaaIagelrlkpeq----------------itDgk--aeerlrcli-fdaaaqstkldPleLFlgilq-QpfpEihcA  429 (524)
T KOG4413|consen  370 HALAAIAGELRLKPEQ----------------ITDGK--AEERLRCLI-FDAAAQSTKLDPLELFLGILQ-QPFPEIHCA  429 (524)
T ss_pred             HHHHHhhccccCChhh----------------ccccH--HHHHHHHHH-HHHHhhccCCChHHHHHHHHc-CCChhhHHH
Confidence            888888532   1221                11111  123333332 11122221  11333444555 556677777


Q ss_pred             HHHHHHhhCCCChhhhhHHHHhcchHHhhhcC
Q psy12594        432 ILCAFAKILPCDPVARRSFVTSHCLRKVQEIE  463 (542)
Q Consensus       432 ~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~  463 (542)
                      ++..+..+....=..+..|...|.++.+.+-.
T Consensus       430 alktfTAiaaqPWalkeifakeefieiVtDas  461 (524)
T KOG4413|consen  430 ALKTFTAIAAQPWALKEIFAKEEFIEIVTDAS  461 (524)
T ss_pred             HHHHHHHHHcCcHHHHHHhcCccceeeecccc
Confidence            77777766543323334555666666555543

>KOG1824|consensus

Probab=98.75  E-value=3.1e-06  Score=87.43  Aligned_cols=400  Identities=14%  Similarity=0.076  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCCh---HHHHHHHhcC
Q psy12594          8 NSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHV---DIRQEVLERN   84 (542)
Q Consensus         8 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~---~~~~~i~~~~   84 (542)
                      .+-++-|++|.+++.++..+-.+-...-...-...++.++.-|+  +...|..|++++..++  ..+   +....  -..
T Consensus       578 ~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia--~S~l~i~l~~~--l~~  651 (1233)
T KOG1824|consen  578 KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIA--MSPLDIDLSPV--LTE  651 (1233)
T ss_pred             hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHH--hccceeehhhh--HHH
Confidence            34456677777777666554442221111112345555555554  4677889999999999  442   11222  234


Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-hhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDE-RCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI  163 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  163 (542)
                      +++.+...++......+...+.++-.+..... ....-.-.-++..+..++...|-.+-..|..+|..+....+.. ..-
T Consensus       652 il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~-l~~  730 (1233)
T KOG1824|consen  652 ILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS-LLK  730 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH-HHH
Confidence            77888888888778888887777766653321 1111111123445556666777778888888888888755543 344


Q ss_pred             HHcCChHHHHHhccCCCHhHHHHHHHHHHHH----hcCCHHHHHHhhhCCChHHHHHhhcCCCHH-----HHHH------
Q psy12594        164 VQCGALPPLVQILASPQLSLKHAAAFALDGI----VKHSPELAESASDCDVIPLLIKALNNDEVN-----VKAD------  228 (542)
Q Consensus       164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl----~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-----~~~~------  228 (542)
                      +..-+++.++.+++++-  ++-.+..++-++    .......      -+ ...+..++..+-.+     +-.+      
T Consensus       731 ~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~------l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA  801 (1233)
T KOG1824|consen  731 ISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPD------LD-YISLLSLLTAPVYEQVTDGLHKQAYYSIA  801 (1233)
T ss_pred             HhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCC------cc-HHHHHHHHcCCcccccccchhHHHHHHHH
Confidence            55567899999999764  333333333222    2211110      11 34455566544211     2222      


Q ss_pred             -HHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC
Q psy12594        229 -AFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN  304 (542)
Q Consensus       229 -a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~  304 (542)
                       ++.+|...|...  ..      .... ++.-+. .. +..++.-|.-.|+.+-++.+....    .+....+++.+.++
T Consensus       802 ~cvA~Lt~~~~~~--s~------s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~----~e~~~~iieaf~sp  869 (1233)
T KOG1824|consen  802 KCVAALTCACPQK--SK------SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQ----NELKDTIIEAFNSP  869 (1233)
T ss_pred             HHHHHHHHhcccc--ch------hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcc----hhhHHHHHHHcCCC
Confidence             333333333211  11      1222 333333 22 567777777778877766543222    23445677888888


Q ss_pred             CccchHHHHHHHhHhhcCChHHH-HHHH----------------------h----------hCchHHHHHhhcCCChhhH
Q psy12594        305 GGYNSLPAIMALGYMSAQSEQIA-EQII----------------------E----------LQGVGSLQTILQCPHKEQL  351 (542)
Q Consensus       305 ~~~~~~~a~~~L~~l~~~~~~~~-~~~~----------------------~----------~~~l~~L~~ll~~~~~~~v  351 (542)
                      +.+++.+|..+||+++.++-+.. ..+.                      .          .++|..|....... ++..
T Consensus       870 ~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~-eegt  948 (1233)
T KOG1824|consen  870 SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECA-EEGT  948 (1233)
T ss_pred             hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccc-hhhh
Confidence            88888888888888876432211 0000                      0          01233333333332 2456


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh-hCCC--------chhhHHhhcC
Q psy12594        352 QVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP-KCEN--------PKELEQMLLG  422 (542)
Q Consensus       352 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~-~~~~--------i~~L~~lL~~  422 (542)
                      |.-.+.+||.++..+|+        ..+|.|-..+.++.  ...|..++.++.-.+. ++.-        +..+..+++ 
T Consensus       949 R~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a--~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~- 1017 (1233)
T KOG1824|consen  949 RNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEA--SNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLR- 1017 (1233)
T ss_pred             HHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCC--cchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHh-
Confidence            77777888888777776        36688888888774  4778777777665542 2222        445556778 


Q ss_pred             CCCHHHHHHHHHHHHhhCCCChhhh
Q psy12594        423 NVSEELLASILCAFAKILPCDPVAR  447 (542)
Q Consensus       423 ~~~~~v~~~~l~~l~~ll~~~~~~~  447 (542)
                      +.|.+|++.++.++.....+.|...
T Consensus      1018 dpDl~VrrvaLvv~nSaahNKpslI 1042 (1233)
T KOG1824|consen 1018 DPDLEVRRVALVVLNSAAHNKPSLI 1042 (1233)
T ss_pred             CCchhHHHHHHHHHHHHHccCHhHH
Confidence            8999999999999998887776543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.73  E-value=4.2e-05  Score=78.84  Aligned_cols=194  Identities=18%  Similarity=0.179  Sum_probs=132.9

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhhcc-------CCHHHHHHHHHHHHHHhc
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDLTK-------QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L~~-------~~~~~~~~a~~~L~~l~~  113 (542)
                      +...+.+|++.+..-|..++..+.++....+  ...++.+.+.=+.+-+-++|++       +....+..++.+|..+|.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            4456788998888888889999999994333  2334456677667777777775       335677888999999987


Q ss_pred             CChhhhh-HhhcCChHHHHhhhcCCCH-HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHH
Q psy12594        114 QDERCAG-LIEDKDLDSIISSLHDFDP-DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL  191 (542)
Q Consensus       114 ~~~~~~~-~~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L  191 (542)
                      . ++... ---.+-+|.|++.+...+. .+...+..+|..++. .++-++.+++.|.++.|++.+.+ .+...+.++.++
T Consensus        87 ~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   87 D-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             C-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            3 34433 2223579999999987776 899999999999995 66668999999999999999987 556788888888


Q ss_pred             HHHhcCCHH-H---HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594        192 DGIVKHSPE-L---AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       192 ~nl~~~~~~-~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  240 (542)
                      .+++..... .   ....+ ...++.+...+.......+-..+..|..+-...
T Consensus       164 ~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             HHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence            887763321 0   00000 123344444444444445555555555554443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.71  E-value=3.3e-06  Score=82.39  Aligned_cols=327  Identities=14%  Similarity=0.131  Sum_probs=213.5

Q ss_pred             CCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHH
Q psy12594         30 KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHM  107 (542)
Q Consensus        30 ~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~  107 (542)
                      +|..+..+.-....+.+..++-+++.++|..+.++++.+.  .+++....+.+.+.---++..|..  .+..-|.+|+..
T Consensus        14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i--~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkl   91 (371)
T PF14664_consen   14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLI--SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKL   91 (371)
T ss_pred             CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH--cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence            5656665555555555655555555999999999999999  888888888887766667777875  446778899999


Q ss_pred             HHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHH
Q psy12594        108 LTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAA  187 (542)
Q Consensus       108 L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a  187 (542)
                      ++.+........ .+..|++..++.+..+.++..+..|+.+|..++-.+|+   .+...|++..|++.+-++..++.+..
T Consensus        92 iR~~l~~~~~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l  167 (371)
T PF14664_consen   92 IRAFLEIKKGPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESL  167 (371)
T ss_pred             HHHHHHhcCCcc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHH
Confidence            999875532211 23457889999999999999999999999999986664   57788999999999998766688888


Q ss_pred             HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-------CH--HHHHHHHHHHHHHhcCChhhHHHHHh-hchHH-HH
Q psy12594        188 AFALDGIVKHSPELAESASDCDVIPLLIKALNND-------EV--NVKADAFLCLADIAKDSPSLASTIAD-GATTL-AV  256 (542)
Q Consensus       188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~-L~  256 (542)
                      +.++-.+.. .|..|..+...--++.+..-+.+.       +.  +....+..++..+-+.=+........ ...+. |+
T Consensus       168 ~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv  246 (371)
T PF14664_consen  168 LDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV  246 (371)
T ss_pred             HHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence            889988887 677777665433445554444322       22  34555666666665543323222222 25788 99


Q ss_pred             HhhcCCChhHHHHHHHHHHHHhcCC-hHHHHHHH------hcCCHHHHHHhhh--cCCccchHHHHHHHhHhhcCC-hHH
Q psy12594        257 EHLTYPHGLVQKNAATLLRDMCKHN-LRLANLVV------LAGGLDGLLRLID--CNGGYNSLPAIMALGYMSAQS-EQI  326 (542)
Q Consensus       257 ~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~------~~~~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~-~~~  326 (542)
                      ..|..++++++......|..+-+-. |.+.....      ..+-+..--.+..  .+.......-..-=.++..+. .-.
T Consensus       247 ~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLl  326 (371)
T PF14664_consen  247 DSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALL  326 (371)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHH
Confidence            9999999999999999999886543 22222111      1111100001110  000000000000000111110 112


Q ss_pred             HHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594        327 AEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIG  363 (542)
Q Consensus       327 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  363 (542)
                      ...++++|.++.|+++....+++.+...|...|+.+.
T Consensus       327 l~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  327 LAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            3457889999999999999767788888888888774

>KOG1242|consensus

Probab=98.70  E-value=2e-05  Score=78.73  Aligned_cols=338  Identities=15%  Similarity=0.121  Sum_probs=206.9

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHH-HHHHHHHHhcCChhhhh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKT-ALHMLTCVAQQDERCAG  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~-a~~~L~~l~~~~~~~~~  120 (542)
                      ..+.+.+++++....-|..|...+..+.  .+. ....+.+.+.+..+-+.+.+.+...++. +..+....+.+-.   .
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v--~g~-~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~  208 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLV--NGL-GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---P  208 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHH--cCc-HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---C
Confidence            4456666777666777777777777777  431 2233445677777877777655544443 3333332222111   1


Q ss_pred             HhhcC---ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        121 LIEDK---DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       121 ~~~~g---~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      ..+..   .+|.++....+..+.+|..|..+...+.+.-+.+.-..    ++|.++.-+.+....-+..++..|+.++..
T Consensus       209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWRTKMASLELLGAMADC  284 (569)
T ss_pred             CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            12223   44455555556678999988888777764333221111    255555555545677888999999999987


Q ss_pred             CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                      .+....... ..++|.+.+.|.++++++++.+..++..++..-. +.+   -...+| |++.+.++...+....-    .
T Consensus       285 ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~d---I~~~ip~Lld~l~dp~~~~~e~~~----~  355 (569)
T KOG1242|consen  285 APKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPD---IQKIIPTLLDALADPSCYTPECLD----S  355 (569)
T ss_pred             chHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHH---HHHHHHHHHHHhcCcccchHHHHH----h
Confidence            665555444 8899999999999999999999999999987532 222   125678 88988888644333221    1


Q ss_pred             HhcCChHHHHHHHhcC----CHHHHHHhhhcCCccchHHHHHHHhHhhcCC--hHHHHHHHhhCchHHHHHhhcCCChhh
Q psy12594        277 MCKHNLRLANLVVLAG----GLDGLLRLIDCNGGYNSLPAIMALGYMSAQS--EQIAEQIIELQGVGSLQTILQCPHKEQ  350 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~----~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~  350 (542)
                      |....  ... .++..    .+|.|.+-+...+...+..++.+++|++.--  +.....++. .++|.|-..+... .++
T Consensus       356 L~~tt--FV~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~-~PE  430 (569)
T KOG1242|consen  356 LGATT--FVA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDA-VPE  430 (569)
T ss_pred             hccee--eee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCC-Chh
Confidence            11110  000 01112    2344445555566678889999999998743  333333332 5677777777775 679


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        351 LQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       351 v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      +|..+.++|+.+...-.+.    ...+.+|.+...+..+.. ..-+..++..|+..+.
T Consensus       431 vR~vaarAL~~l~e~~g~~----~f~d~~p~l~e~~~~~k~-~~~~~g~aq~l~evl~  483 (569)
T KOG1242|consen  431 VRAVAARALGALLERLGEV----SFDDLIPELSETLTSEKS-LVDRSGAAQDLSEVLA  483 (569)
T ss_pred             HHHHHHHHHHHHHHHHHhh----cccccccHHHHhhccchh-hhhhHHHhhhHHHHHh
Confidence            9999999998885432221    115678888888877642 3344455555555543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.70  E-value=1.3e-06  Score=85.95  Aligned_cols=260  Identities=16%  Similarity=0.151  Sum_probs=169.1

Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh--HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNK--HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAE  203 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~  203 (542)
                      ++..++..|++..|.+|..|+...+.++.--.  .-.+.+...|.  .|.+.+....+++.-..+.++..|.+. ...+.
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv-~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSV-HRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhh-hcccc
Confidence            56778899999999999999998887763111  11234444443  467778888888888777777776652 11111


Q ss_pred             -HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594        204 -SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL---ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC  278 (542)
Q Consensus       204 -~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~  278 (542)
                       +---.|++|.|..+|++.+..+..+.+..++.+|..+++.   ++.+   .+.- |+++|++.+.++|++|...+..++
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is  758 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCIS  758 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence             1112688999999999999999999999999999988753   2333   3455 999999999999999999999998


Q ss_pred             cCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHH
Q psy12594        279 KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT  358 (542)
Q Consensus       279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  358 (542)
                      +.--       -..++..|+.-|+..+-..+....-+|+-.+..+..       ..++|.|+.=-.. ++..+|.-.+++
T Consensus       759 ~aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~T-Pe~nVQnGvLka  823 (975)
T COG5181         759 RAIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYET-PEANVQNGVLKA  823 (975)
T ss_pred             hhcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccC-chhHHHHhHHHH
Confidence            5321       112334555555555444444433444433322111       1456666655555 345677777777


Q ss_pred             HHHhhcCChH-HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594        359 LGQIGKHSVD-NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC  410 (542)
Q Consensus       359 L~~l~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~  410 (542)
                      ++.+...-.+ ....+  ....|.|-+.|.+.+  +--|..|...+..+.-+|
T Consensus       824 m~fmFeyig~~s~dYv--y~itPlleDAltDrD--~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         824 MCFMFEYIGQASLDYV--YSITPLLEDALTDRD--PVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHHHHHHH--HHhhHHHHhhhcccc--hHHHHHHHHHHHHHhcCC
Confidence            6665322111 11111  235678888888874  467778888888887555

>KOG2973|consensus

Probab=98.67  E-value=1.8e-05  Score=72.07  Aligned_cols=273  Identities=15%  Similarity=0.138  Sum_probs=176.4

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH--hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594         86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL--IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI  163 (542)
Q Consensus        86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  163 (542)
                      +..+++++.+.+|.++..|+..+..+...  ..+.+  -+...++.+.+++.+.++  ...|+.+|.|++. ++..++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKL   79 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHH
Confidence            45688999999999999999888887655  22221  233578889999988777  5678899999987 66778888


Q ss_pred             HHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh--h----CCChHHHHHhhcCC-C-HHHHHHHHHHHHH
Q psy12594        164 VQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS--D----CDVIPLLIKALNND-E-VNVKADAFLCLAD  235 (542)
Q Consensus       164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~--~----~~~i~~L~~ll~~~-~-~~~~~~a~~~L~~  235 (542)
                      ++. ++..++..+-++...+-...+..|.|+++..........  .    .+.+..+......+ + ..-....+..+.|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            777 778888888888777888899999999996554443322  1    33344444444422 1 1223456678889


Q ss_pred             HhcCChhhHHHHHhhchHH--HHHhhcCCChhHHH-HHHHHHHHHhcCChHHHHHHHhc--CCHHHHH------------
Q psy12594        236 IAKDSPSLASTIADGATTL--AVEHLTYPHGLVQK-NAATLLRDMCKHNLRLANLVVLA--GGLDGLL------------  298 (542)
Q Consensus       236 l~~~~~~~~~~~~~~~~i~--L~~lL~~~~~~v~~-~a~~~L~~L~~~~~~~~~~~~~~--~~i~~Lv------------  298 (542)
                      |++.. ..+..+.+...++  .+.-+.+.+..+|+ ..+++|.|.|-..+.... +.+.  ..+|.|+            
T Consensus       159 ls~~~-~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  159 LSQFE-AGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             Hhhhh-hhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccCHH
Confidence            98875 4677777755554  33333335555555 578889998865543332 2221  1222221            


Q ss_pred             ---------Hhhh-----cCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594        299 ---------RLID-----CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK  364 (542)
Q Consensus       299 ---------~lL~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  364 (542)
                               +++.     .+++.++..-+.+|.-|+.. ...++.+.+.|+-+.+-.+=+...++++++.+-.....+..
T Consensus       237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                     3332     24556888888888877765 44566677767777666666666667787755555555544


Q ss_pred             CCh
Q psy12594        365 HSV  367 (542)
Q Consensus       365 ~~~  367 (542)
                      ..+
T Consensus       316 ~e~  318 (353)
T KOG2973|consen  316 LEP  318 (353)
T ss_pred             ccc
Confidence            443

>KOG1824|consensus

Probab=98.66  E-value=2.8e-05  Score=80.63  Aligned_cols=291  Identities=15%  Similarity=0.178  Sum_probs=173.3

Q ss_pred             CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHH
Q psy12594         52 DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSI  130 (542)
Q Consensus        52 s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~L  130 (542)
                      +.|.+|+..|..+++.+.....+......  ...++.+++-|  +++..|..|+.++..++...-.+.. -+-..+++.+
T Consensus       581 d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l  656 (1233)
T KOG1824|consen  581 DSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL  656 (1233)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence            56789999999999988832222222221  12344444444  5677788899999988866544443 3334577888


Q ss_pred             HhhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCC
Q psy12594        131 ISSLHDFDPDTRANAALALGGLAKDNK-HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCD  209 (542)
Q Consensus       131 v~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~  209 (542)
                      ...+.......+...+.++-.+..... .......+ -++..+-.++...+..+...|..+|..+....|..- .-+...
T Consensus       657 ~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~  734 (1233)
T KOG1824|consen  657 ASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNP  734 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhh
Confidence            888877777777776666665552111 11111111 124445556677778888899999999988655433 334467


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHH----HhcCChhhHHHHHhhchHH-HHHhhcCCC---------hhHHHHHHHHHH
Q psy12594        210 VIPLLIKALNNDEVNVKADAFLCLAD----IAKDSPSLASTIADGATTL-AVEHLTYPH---------GLVQKNAATLLR  275 (542)
Q Consensus       210 ~i~~L~~ll~~~~~~~~~~a~~~L~~----l~~~~~~~~~~~~~~~~i~-L~~lL~~~~---------~~v~~~a~~~L~  275 (542)
                      +++.++.+++++-  ++-.+..++-+    +.....+.      .+ .. ++.++..+-         .......+.|..
T Consensus       735 iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~------l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA  805 (1233)
T KOG1824|consen  735 ILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPD------LD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVA  805 (1233)
T ss_pred             hHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCC------cc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHH
Confidence            8899999998663  33333333222    22222111      12 34 777777661         122334455555


Q ss_pred             HHhcCChHHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHH
Q psy12594        276 DMCKHNLRLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV  353 (542)
Q Consensus       276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~  353 (542)
                      .|+...++....+     ...+..-+.+  .+..++.-|+..+|.+..+.+....    .+.-..+++-+.+++ ++++.
T Consensus       806 ~Lt~~~~~~s~s~-----a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~----~e~~~~iieaf~sp~-edvks  875 (1233)
T KOG1824|consen  806 ALTCACPQKSKSL-----ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQ----NELKDTIIEAFNSPS-EDVKS  875 (1233)
T ss_pred             HHHHhccccchhH-----HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcc----hhhHHHHHHHcCCCh-HHHHH
Confidence            5655444332222     2234444443  3455888888899998765443222    234446778888854 69999


Q ss_pred             HHHHHHHHhhcCCh
Q psy12594        354 AAAWTLGQIGKHSV  367 (542)
Q Consensus       354 ~a~~~L~~l~~~~~  367 (542)
                      +|.++||+++.|+-
T Consensus       876 AAs~ALGsl~vgnl  889 (1233)
T KOG1824|consen  876 AASYALGSLAVGNL  889 (1233)
T ss_pred             HHHHHhhhhhcCch
Confidence            99999999998764

>KOG1517|consensus

Probab=98.63  E-value=3.8e-06  Score=87.63  Aligned_cols=227  Identities=15%  Similarity=0.157  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhc
Q psy12594         58 QHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLH  135 (542)
Q Consensus        58 ~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~  135 (542)
                      |..|+..|++..  .- +=....-..-|++|.++++|++...++|.--+++..++..-++..+. +++.++-..+++.|.
T Consensus       487 RlRAL~LL~RFL--DlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  487 RLRALVLLARFL--DLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHh--ccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence            455777777766  33 33334444679999999999999999999999999998777777777 888888889999987


Q ss_pred             C-C--CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCCh
Q psy12594        136 D-F--DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVI  211 (542)
Q Consensus       136 ~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i  211 (542)
                      + +  +++-|..|+.+|+.+....+--++...+.+.+...+..|.++ .+-++..++-+|+.|-.+.++.+-.-.+.++.
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            7 3  368999999999999988888888889999999999999985 68899999999999999888888888889999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCC----hhhHH------------HHHhh----chHHHHHhhcCCChhHHHHHH
Q psy12594        212 PLLIKALNNDEVNVKADAFLCLADIAKDS----PSLAS------------TIADG----ATTLAVEHLTYPHGLVQKNAA  271 (542)
Q Consensus       212 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~------------~~~~~----~~i~L~~lL~~~~~~v~~~a~  271 (542)
                      +.|..++.++.+++|..|+.+|+.+....    ++...            ...+.    +.++++.++++.++-++...+
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            99999999999999999999999998752    11111            11121    122366677778888888888


Q ss_pred             HHHHHHhcCChHHHH
Q psy12594        272 TLLRDMCKHNLRLAN  286 (542)
Q Consensus       272 ~~L~~L~~~~~~~~~  286 (542)
                      -+|..+..+......
T Consensus       725 v~ls~~~~g~~~~~~  739 (1387)
T KOG1517|consen  725 VALSHFVVGYVSHLK  739 (1387)
T ss_pred             HHHHHHHHhhHHHhH
Confidence            888887766544433

>KOG1061|consensus

Probab=98.62  E-value=2.4e-06  Score=86.92  Aligned_cols=374  Identities=19%  Similarity=0.126  Sum_probs=203.0

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      ++..+++=.++++|.+|..|++.++.+-  .. ....     -...++...+++.++.+|+.++....++-..+  ...+
T Consensus        87 avnt~~kD~~d~np~iR~lAlrtm~~l~--v~-~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--~~~~  156 (734)
T KOG1061|consen   87 AVNTFLKDCEDPNPLIRALALRTMGCLR--VD-KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID--PDLV  156 (734)
T ss_pred             hhhhhhccCCCCCHHHHHHHhhceeeEe--eh-HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC--hhhc
Confidence            3444444445667778877777776665  22 1111     24568888899999999999998888876433  2236


Q ss_pred             hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594        122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL  201 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~  201 (542)
                      .+.|.++.|-.++.+.+|.+...|+.+|..+...++..-...+....+..++..+...+.=-|...+.++.+-.-.++..
T Consensus       157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e  236 (734)
T KOG1061|consen  157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE  236 (734)
T ss_pred             cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh
Confidence            68899999999999999999999999999998655431111111111223333333322222322322333222211111


Q ss_pred             HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594        202 AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       202 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~  280 (542)
                      ..     ..+..+...+++.+..+.-.+..++.++...-......+. ..+-+ ++.++.... ++...++.=+..+..+
T Consensus       237 a~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~  309 (734)
T KOG1061|consen  237 AE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLILQK  309 (734)
T ss_pred             HH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence            11     1234455555555555555555555555443322111111 12333 444444443 3333222222111111


Q ss_pred             ChHH-----------------H-----H---HHHh----cCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594        281 NLRL-----------------A-----N---LVVL----AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII  331 (542)
Q Consensus       281 ~~~~-----------------~-----~---~~~~----~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  331 (542)
                      .|..                 .     +   .+..    ..++..+.++-...+......+++++|+++..-++.     
T Consensus       310 ~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----  384 (734)
T KOG1061|consen  310 RPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----  384 (734)
T ss_pred             ChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----
Confidence            1110                 0     0   0000    013344455555567778888999999997643332     


Q ss_pred             hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594        332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE  411 (542)
Q Consensus       332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~  411 (542)
                       ++.++.|++++....+ .+..++...+..+....|.....+     ++.+..-+.+=+ +++.|..-.|.++.-....+
T Consensus       385 -~~cv~~lLell~~~~~-yvvqE~~vvi~dilRkyP~~~~~v-----v~~l~~~~~sl~-epeak~amiWilg~y~~~i~  456 (734)
T KOG1061|consen  385 -NDCVSILLELLETKVD-YVVQEAIVVIRDILRKYPNKYESV-----VAILCENLDSLQ-EPEAKAALIWILGEYAERIE  456 (734)
T ss_pred             -hhhHHHHHHHHhhccc-ceeeehhHHHHhhhhcCCCchhhh-----hhhhcccccccC-ChHHHHHHHHHHhhhhhccC
Confidence             5789999999987544 677778888888877766543322     233333333322 46888888998887765543


Q ss_pred             Cchh-hHHhhcC--CCCHHHHHHHHHHHHhhCCCChh
Q psy12594        412 NPKE-LEQMLLG--NVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       412 ~i~~-L~~lL~~--~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                      .-+. |..++++  +.+.+|....+.+..+++-+.+.
T Consensus       457 ~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~  493 (734)
T KOG1061|consen  457 NALELLESFLENFKDETAEVQLELLTAAIKLFLKKPT  493 (734)
T ss_pred             cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc
Confidence            3333 3333332  33446666666666665444443

>KOG2973|consensus

Probab=98.62  E-value=2.9e-05  Score=70.68  Aligned_cols=271  Identities=13%  Similarity=0.143  Sum_probs=171.6

Q ss_pred             hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594        127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV-QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA  205 (542)
Q Consensus       127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  205 (542)
                      ...++.++.+.+|.++..|+..+..++..  ..+-... +...++.+.+++...++  .+.|+.+|.|++. ++..++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKL   79 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHH
Confidence            34688899999999999999988888764  1111111 22457889999988776  6778899999999 77788888


Q ss_pred             hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------hchHHHHHh-hcCC-C-hhHHHHHHHHHHH
Q psy12594        206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD------GATTLAVEH-LTYP-H-GLVQKNAATLLRD  276 (542)
Q Consensus       206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~L~~l-L~~~-~-~~v~~~a~~~L~~  276 (542)
                      ++. .+..++.++.++....-...+.+|.|+++...........      .+.+.++.. ...+ + ..-....+..+.|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            765 7788888888887888899999999999987655554433      233444433 3333 2 2344567778888


Q ss_pred             HhcCChHHHHHHHhcCCH--HHHHHhhhcCCccchH-HHHHHHhHhhcCChHHHHHHH-hhCchHHHH------------
Q psy12594        277 MCKHNLRLANLVVLAGGL--DGLLRLIDCNGGYNSL-PAIMALGYMSAQSEQIAEQII-ELQGVGSLQ------------  340 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~~i--~~Lv~lL~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~------------  340 (542)
                      +++....+ ..+.+...+  ..++.+-. .+..+|. ..+.+|.|.|.....+...+- +.+.++.|+            
T Consensus       159 ls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  159 LSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             Hhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence            88654433 334333332  34444444 4445554 445688887654433222211 112333322            


Q ss_pred             ---------Hhhc----CCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        341 ---------TILQ----CPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       341 ---------~ll~----~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                               +++.    ..+++.++.....+|..+|+.. .-++.+.+.|+.+.+-.+-+.. .++++++.+-....-++
T Consensus       237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e-~ded~~~ace~vvq~Lv  314 (353)
T KOG2973|consen  237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWE-EDEDIREACEQVVQMLV  314 (353)
T ss_pred             HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCC-CcHHHHHHHHHHHHHHH
Confidence                     3333    2234678888999999997654 3466777777777766665554 46677765554443333

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.60  E-value=2.4e-05  Score=76.80  Aligned_cols=251  Identities=25%  Similarity=0.340  Sum_probs=180.2

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      ..++.+..++.+.+..++..|...++.+.            ....++.+...+.+.++.+|..++.+|+.+-..      
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~------------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG------------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP------  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc------------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh------
Confidence            46788899999999999999999988887            456788999999999999999999988776532      


Q ss_pred             HhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCH------------hHHHHH
Q psy12594        121 LIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL------------SLKHAA  187 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~------------~~~~~a  187 (542)
                          ..++.++.++. +++..+|..+.++|+.+-...           .+..++..+++...            .++..+
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                37889999998 588999999999999886521           26677777776552            355556


Q ss_pred             HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhH
Q psy12594        188 AFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLV  266 (542)
Q Consensus       188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v  266 (542)
                      ...|+.+..           ...++.+...+.+.+..+|..+..+|..+....         ..+.+ +...+.+.+..+
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence            666665544           456788889999888899999999999887765         24456 788888889999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594        267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP  346 (542)
Q Consensus       267 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  346 (542)
                      +..++.+|..+-.           ....+.+...+...+..++..+...++.+  .   .      ......+...+.+ 
T Consensus       230 r~~~~~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~---~------~~~~~~l~~~~~~-  286 (335)
T COG1413         230 RKAALLALGEIGD-----------EEAVDALAKALEDEDVILALLAAAALGAL--D---L------AEAALPLLLLLID-  286 (335)
T ss_pred             HHHHHHHhcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhccc--C---c------hhhHHHHHHHhhc-
Confidence            9998888776653           23345566777777766655555444411  0   0      0122233444444 


Q ss_pred             ChhhHHHHHHHHHHHhhcCCh
Q psy12594        347 HKEQLQVAAAWTLGQIGKHSV  367 (542)
Q Consensus       347 ~~~~v~~~a~~~L~~l~~~~~  367 (542)
                      ....++..+...++.+.....
T Consensus       287 ~~~~~~~~~~~~l~~~~~~~~  307 (335)
T COG1413         287 EANAVRLEAALALGQIGQEKA  307 (335)
T ss_pred             chhhHHHHHHHHHHhhcccch
Confidence            234677777777777754443

>KOG1059|consensus

Probab=98.60  E-value=2.3e-05  Score=78.97  Aligned_cols=216  Identities=14%  Similarity=0.111  Sum_probs=142.8

Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV  164 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  164 (542)
                      .-+.++.+|++.-+-+|+.|+.++..+.-.-|+..+    ..+|.|++-|.++||.++..|+.+++.|++.+|.+.-   
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---  217 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---  217 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence            344555667777777777777777776644433333    3567788888888888888888888888876665322   


Q ss_pred             HcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC-HHHHHHHHHHHH--HHhcCC
Q psy12594        165 QCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE-VNVKADAFLCLA--DIAKDS  240 (542)
Q Consensus       165 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~--~l~~~~  240 (542)
                        ..-|.+.++|.+. +.=+....+..+++|+--.|....     ..++++..++.+.. ..+...|+.++.  +++...
T Consensus       218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~  290 (877)
T KOG1059|consen  218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM  290 (877)
T ss_pred             --cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence              2256677777554 233444556667777765565543     34578888887653 334444444432  233332


Q ss_pred             hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594        241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM  319 (542)
Q Consensus       241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l  319 (542)
                      ++.-..+  .-.+. |-.++.++|+.+++-++-+++.+....|...+...     +.++++|.+.|+++|..|+..+..+
T Consensus       291 ~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  291 SDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESIRLRALDLLYGM  363 (877)
T ss_pred             CCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchhHHHHHHHHHHH
Confidence            2222211  13456 77888899999999999999999988877665432     4678999999999999999988777


Q ss_pred             hc
Q psy12594        320 SA  321 (542)
Q Consensus       320 ~~  321 (542)
                      +.
T Consensus       364 Vs  365 (877)
T KOG1059|consen  364 VS  365 (877)
T ss_pred             hh
Confidence            64

>KOG2259|consensus

Probab=98.60  E-value=5.7e-07  Score=89.29  Aligned_cols=298  Identities=16%  Similarity=0.140  Sum_probs=196.3

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-----hhhhh
Q psy12594         46 IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD-----ERCAG  120 (542)
Q Consensus        46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-----~~~~~  120 (542)
                      |..+..+.|+.+|..|+..|..|.  +.-....     -.....++.|++++..+|..|+..+.-++...     .+...
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~--eg~kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALS--EGFKLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhc--ccccccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            667777788888888888888887  4322211     14567788999999999999976655554322     11111


Q ss_pred             -HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH--h--
Q psy12594        121 -LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI--V--  195 (542)
Q Consensus       121 -~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl--~--  195 (542)
                       -....++..+.+.+.+....+|..|+.+|+.+-..+.+....-++..++..+-+--....     .......+-  +  
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahk-----rpk~l~s~GewSsG  350 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHK-----RPKALYSSGEWSSG  350 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhccc-----chHHHHhcCCcccC
Confidence             122357778888999888999999999999887655554444433322221111000000     000111111  1  


Q ss_pred             ---------cCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChh
Q psy12594        196 ---------KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGL  265 (542)
Q Consensus       196 ---------~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~  265 (542)
                               .+..+....++..|+-..++.-+.+.--++|+.|+..++.|+...|.+..     ..+. |++++.+..+.
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV  425 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence                     01122344567788888899888888889999999999999999887766     5678 99999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcC
Q psy12594        266 VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQC  345 (542)
Q Consensus       266 v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  345 (542)
                      ||..|+.+|..++.+-      .++...++.+...|.+.++++|.+.-..|++.--.+.+....     .+..|+.-|..
T Consensus       426 VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~k  494 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHL------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGK  494 (823)
T ss_pred             HHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhh
Confidence            9999999999999762      223455778889999999999988887877654444333332     23333433433


Q ss_pred             CChhhHHHHHHHHHHHhhcCChHHHHHH
Q psy12594        346 PHKEQLQVAAAWTLGQIGKHSVDNVTAL  373 (542)
Q Consensus       346 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l  373 (542)
                      -+  .-+.....+++.++.+++.....+
T Consensus       495 yP--qDrd~i~~cm~~iGqnH~~lv~s~  520 (823)
T KOG2259|consen  495 YP--QDRDEILRCMGRIGQNHRRLVLSN  520 (823)
T ss_pred             CC--CCcHHHHHHHHHHhccChhhHHHH
Confidence            22  235567788999988877655544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.55  E-value=4.2e-05  Score=75.12  Aligned_cols=249  Identities=24%  Similarity=0.282  Sum_probs=173.8

Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594         84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI  163 (542)
Q Consensus        84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  163 (542)
                      ..++.+++.+.+.+..++..+...++.+...          -+++.+..++.+.++.+|..++.+|+.+-.  +.     
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~~-----  105 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE----------EAVPLLRELLSDEDPRVRDAAADALGELGD--PE-----  105 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC--hh-----
Confidence            3677888899988999999999887766533          378999999999999999999998888753  22     


Q ss_pred             HHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCH------------HHHHHHH
Q psy12594        164 VQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEV------------NVKADAF  230 (542)
Q Consensus       164 ~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------~~~~~a~  230 (542)
                          .++.++.++. +++..+|..+.++|+.+-.           ...+..++..+.+...            .++..+.
T Consensus       106 ----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         106 ----AVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             ----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence                3888999998 5889999999999999876           2336677777776542            3555555


Q ss_pred             HHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccch
Q psy12594        231 LCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNS  309 (542)
Q Consensus       231 ~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~  309 (542)
                      .+++.+-..           ..++ +...+.+.+..++..+..+|..+..+.         ....+.+...+.+++..++
T Consensus       171 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr  230 (335)
T COG1413         171 EALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVR  230 (335)
T ss_pred             HHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHH
Confidence            555554322           3455 788888888899999999988887654         2344567788888888899


Q ss_pred             HHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcC
Q psy12594        310 LPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT  389 (542)
Q Consensus       310 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~  389 (542)
                      ..++.+++.+...           .....+...+.... ..++..+...++..  ....         ....+...+.+.
T Consensus       231 ~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~-~~~~~~~~~~~~~~--~~~~---------~~~~l~~~~~~~  287 (335)
T COG1413         231 KAALLALGEIGDE-----------EAVDALAKALEDED-VILALLAAAALGAL--DLAE---------AALPLLLLLIDE  287 (335)
T ss_pred             HHHHHHhcccCcc-----------hhHHHHHHHHhccc-hHHHHHHHHHhccc--Cchh---------hHHHHHHHhhcc
Confidence            9999888876433           34455666666643 34444444444311  1111         234445555554


Q ss_pred             CCChHHHHHHHHHHHHHHhh
Q psy12594        390 CVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       390 ~~~~~v~~~a~~aL~nl~~~  409 (542)
                        ...++..+++++......
T Consensus       288 --~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         288 --ANAVRLEAALALGQIGQE  305 (335)
T ss_pred             --hhhHHHHHHHHHHhhccc
Confidence              347888888877766544

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.53  E-value=7.9e-05  Score=77.62  Aligned_cols=265  Identities=17%  Similarity=0.127  Sum_probs=169.8

Q ss_pred             hcCCChHHHHHHH-HHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChH
Q psy12594         50 LADKVPSIQHAAL-ATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD  128 (542)
Q Consensus        50 L~s~~~~v~~~a~-~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~  128 (542)
                      +.+.+...+..|+ .++..+.  .+++.      ...++.+++...+.+.++++..-..|..++...|+...+    +++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~--~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMS--LGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHh--cCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHH
Confidence            6777777777777 6777777  44332      225677888887889999999999999999888744332    478


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC
Q psy12594        129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC  208 (542)
Q Consensus       129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~  208 (542)
                      .+.+-++++++.+|..|+++++.+-.  ++....     +++.+.+++.++++.+|+.|+.++.++-+-+++   .+.+.
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~  165 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLRV--KELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHEL  165 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcc
Confidence            88999999999999999999887743  232222     378899999999999999999999999875554   34457


Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHH
Q psy12594        209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLA  285 (542)
Q Consensus       209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~  285 (542)
                      |.+..+..++.+.+|.+...|+.+|..+....  ....... ...++ +.-..... .++++..-...|..-....+...
T Consensus       166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~--a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~  243 (757)
T COG5096         166 GLIDILKELVADSDPIVIANALASLAEIDPEL--AHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSA  243 (757)
T ss_pred             cHHHHHHHHhhCCCchHHHHHHHHHHHhchhh--hhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcH
Confidence            78899999999999999999999999886551  1111110 01111 11001111 14444444455544444444322


Q ss_pred             HHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594        286 NLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP  346 (542)
Q Consensus       286 ~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  346 (542)
                      ..+     ..++...+.+.++.+...++..+..+....+....   .....+.++.++..+
T Consensus       244 ~~~-----~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~---~~~~~~~l~~Ll~~~  296 (757)
T COG5096         244 EDF-----EERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNL---FLISSPPLVTLLAKP  296 (757)
T ss_pred             HHH-----HHhccchhhhCcHHHHHHHHHHHHHHhhhhccccH---HHhhccHHHHHHcCC
Confidence            212     22334445556666666666655544432222111   112344555666553

>KOG1242|consensus

Probab=98.52  E-value=1.9e-05  Score=78.81  Aligned_cols=338  Identities=16%  Similarity=0.130  Sum_probs=205.3

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI  122 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  122 (542)
                      +..+..-+....+.+|.....+|..+........     .....+.+.++++.....-+..+.+.+..+..+. ....+.
T Consensus        98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~-----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~  171 (569)
T KOG1242|consen   98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS-----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLK  171 (569)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC-----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhh
Confidence            3444444555667888887777777761111111     1235567778888777788888888888887654 333456


Q ss_pred             hcCChHHHHhhhcCCCHHHHHH-HHHHHHHhhcCChHHHHHHHHcC---ChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        123 EDKDLDSIISSLHDFDPDTRAN-AALALGGLAKDNKHFAERIVQCG---ALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       123 ~~g~v~~Lv~lL~~~~~~~~~~-a~~~L~~l~~~~~~~~~~i~~~g---~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                      +.+.+..+....++.....+.. +..+.......-.    ...+..   .+|.++..+.+....+|..|..+...+...-
T Consensus       172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~  247 (569)
T KOG1242|consen  172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL  247 (569)
T ss_pred             hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc
Confidence            6778888888888776443332 3332222221000    111122   2455556666667889999888887776633


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                      +...-    .-.+|.++.-+.......+..++..++.++...+ .+-...-..++| +.+.|-+..++++..+..++..+
T Consensus       248 ~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap-~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  248 SAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP-KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF  322 (569)
T ss_pred             Ccchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch-HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            22111    1223444444444467788899999999988876 444455578999 99999999999999999999999


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC---ChhhHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP---HKEQLQVA  354 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~v~~~  354 (542)
                      +.-.....  +  ...+|.|++.+.++.-.+. .++..|+.-..      -..++.-.+..++.++..+   .+..+++.
T Consensus       323 ~svidN~d--I--~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttF------V~~V~~psLalmvpiL~R~l~eRst~~kr~  391 (569)
T KOG1242|consen  323 GSVIDNPD--I--QKIIPTLLDALADPSCYTP-ECLDSLGATTF------VAEVDAPSLALMVPILKRGLAERSTSIKRK  391 (569)
T ss_pred             HHhhccHH--H--HHHHHHHHHHhcCcccchH-HHHHhhcceee------eeeecchhHHHHHHHHHHHHhhccchhhhh
Confidence            85321111  1  2356788888877764432 23333332110      0111122333333333322   23578889


Q ss_pred             HHHHHHHhhcCC--hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        355 AAWTLGQIGKHS--VDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       355 a~~~L~~l~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      ++..++|++.--  +.....++. .++|.|-..+.+.  .+++|..++.||+.+.++
T Consensus       392 t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  392 TAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDA--VPEVRAVAARALGALLER  445 (569)
T ss_pred             HHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHH
Confidence            999999998654  333332222 2556666666665  469999999999999765

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.51  E-value=2.1e-05  Score=76.85  Aligned_cols=326  Identities=15%  Similarity=0.104  Sum_probs=205.0

Q ss_pred             hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHH
Q psy12594         74 VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGG  151 (542)
Q Consensus        74 ~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~  151 (542)
                      +..+..+......+.+..++-+++.+++..+.++++.+..+......+.+.+.--.++..|..+  +..-|++|++.+..
T Consensus        15 p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~   94 (371)
T PF14664_consen   15 PTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRA   94 (371)
T ss_pred             chhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHH
Confidence            5555555555556666655555669999999999999988877777777777767777777654  36678899998888


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHH
Q psy12594        152 LAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFL  231 (542)
Q Consensus       152 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  231 (542)
                      +..-....  ..+..|++..++.+..+++..++..|+.+|..++-.+|+   .+...|++..+.+.+.++..++.+..+.
T Consensus        95 ~l~~~~~~--~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~  169 (371)
T PF14664_consen   95 FLEIKKGP--KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLD  169 (371)
T ss_pred             HHHhcCCc--ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHH
Confidence            87542211  112346788899999999999999999999999997775   4456999999999998876678889999


Q ss_pred             HHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-------Ch--hHHHHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHh
Q psy12594        232 CLADIAKDSPSLASTIADGATTL-AVEHLTYP-------HG--LVQKNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRL  300 (542)
Q Consensus       232 ~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-------~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~l  300 (542)
                      ++..+-... ..++.+...--++ ++.-+.+.       +.  +....+..++..+-+..+.....-.+. .++..|+..
T Consensus       170 ~lL~lLd~p-~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~  248 (371)
T PF14664_consen  170 TLLYLLDSP-RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDS  248 (371)
T ss_pred             HHHHHhCCc-chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHH
Confidence            999998775 4666555544444 44333322       22  345556666666655544433211122 578889999


Q ss_pred             hhcCCccchHHHHHHHhHhhcC-ChHHHHHHH------hhCch---HHHHHhhcCCChhhHHHHHHHHHHHhhcCCh-HH
Q psy12594        301 IDCNGGYNSLPAIMALGYMSAQ-SEQIAEQII------ELQGV---GSLQTILQCPHKEQLQVAAAWTLGQIGKHSV-DN  369 (542)
Q Consensus       301 L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~------~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~  369 (542)
                      |..++++++...+..+..+-.- .+.......      ..+-.   ..+..-... ......... .-=.++..+.- -.
T Consensus       249 L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e-~~~~~~~~~-~~~~~l~~~y~aLl  326 (371)
T PF14664_consen  249 LRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAE-AKSILPHRS-SKRPNLVNHYLALL  326 (371)
T ss_pred             HcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccc-cccccCccc-cccccHHHHHHHHH
Confidence            9999988888888887776531 111111110      00110   000000000 000000000 00011111111 12


Q ss_pred             HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        370 VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       370 ~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ...++++|.++.|+++..+.. +..+..+|...|+.+..
T Consensus       327 l~ili~~gL~~~L~~li~~~~-d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  327 LAILIEAGLLEALVELIESSE-DSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHHcChHHHHHHHHhcCC-CchHHHHHHHHHHHHHH
Confidence            334568899999999998763 46788888888887754

>KOG4535|consensus

Probab=98.51  E-value=3.2e-06  Score=81.01  Aligned_cols=384  Identities=15%  Similarity=0.082  Sum_probs=201.9

Q ss_pred             HHHHHHHHhcCCCC-chHHH-HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHH-------------
Q psy12594         19 CFVQTMSAFADKPS-TIHFL-KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVL-------------   81 (542)
Q Consensus        19 ~~~~~l~~l~~~~~-~~~~l-~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~-------------   81 (542)
                      +.+++|+++-++.. .+-.+ .-..++..+.+++++.|+.++..++..+..+.+...  ++....+.             
T Consensus       126 q~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~  205 (728)
T KOG4535|consen  126 QIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHL  205 (728)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCC
Confidence            45666777766433 22222 123456677888999999999999999999884333  44432221             


Q ss_pred             ----------hcC------------------c-----------------HHHHHHhhcc--CCHHHHHHHHHHHHHHhcC
Q psy12594         82 ----------ERN------------------L-----------------VALVLKDLTK--QNKHYKKTALHMLTCVAQQ  114 (542)
Q Consensus        82 ----------~~~------------------~-----------------l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~  114 (542)
                                +..                  .                 .......+.+  ....+|.++..+|..++.+
T Consensus       206 s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~  285 (728)
T KOG4535|consen  206 SPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY  285 (728)
T ss_pred             CChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH
Confidence                      000                  0                 0011111221  2235677777777777654


Q ss_pred             ChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc-----CChHHHHHHHHcCChHHHH------Hh-ccCCCHh
Q psy12594        115 DERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAK-----DNKHFAERIVQCGALPPLV------QI-LASPQLS  182 (542)
Q Consensus       115 ~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~------~l-l~~~~~~  182 (542)
                      -.-.+. +...+...+...+.+.+|.++..+..++..+..     ..|+..+.-...|.+-.+.      .. -.+..+.
T Consensus       286 ~~~~~~-~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~T  364 (728)
T KOG4535|consen  286 FSMTQA-YLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPT  364 (728)
T ss_pred             HHHHHH-HHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCC
Confidence            322222 111233445555667789999999988887752     2233222222222111111      00 1112245


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHhhhCC---ChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHH
Q psy12594        183 LKHAAAFALDGIVKHSPELAESASDCD---VIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVE  257 (542)
Q Consensus       183 ~~~~a~~~L~nl~~~~~~~~~~~~~~~---~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~  257 (542)
                      .+...+.++.+|.....+   . ...|   ..+.+..=..+. +.-++..|.+++.-+.-+..-............ +..
T Consensus       365 l~~s~Cdals~i~~~~f~---~-lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~  440 (728)
T KOG4535|consen  365 LQASACDALSSILPEAFS---N-LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILM  440 (728)
T ss_pred             chhHHHHHHhhcCchhhc---C-CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHH
Confidence            666677777777652211   0 0011   112222212211 222555566665555444332223333345556 667


Q ss_pred             hhcCCChhHHHHHHHHHHHHhcC----ChH---HHHHHHhcCCHHHHHHhh---hcCCccchHHHHHHHhHhhcCCh---
Q psy12594        258 HLTYPHGLVQKNAATLLRDMCKH----NLR---LANLVVLAGGLDGLLRLI---DCNGGYNSLPAIMALGYMSAQSE---  324 (542)
Q Consensus       258 lL~~~~~~v~~~a~~~L~~L~~~----~~~---~~~~~~~~~~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~---  324 (542)
                      .+.+..-..+..++|++.|++..    .|.   ..+.+. .-.+.++...-   ...+.+++.++.++|+|+..--.   
T Consensus       441 sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~  519 (728)
T KOG4535|consen  441 SLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIE  519 (728)
T ss_pred             HhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhh
Confidence            77777788999999999998643    222   122111 11122222221   22456799999999999864211   


Q ss_pred             HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594        325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD-NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL  403 (542)
Q Consensus       325 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL  403 (542)
                      +.....+..+....+......+..-+++.+||++++|+..+..- ....=+...+++.|..++.+.. ++.||..|+.+|
T Consensus       520 ~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~-NFKVRi~AA~aL  598 (728)
T KOG4535|consen  520 KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK-NFKVRIRAAAAL  598 (728)
T ss_pred             hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc-cceEeehhhhhh
Confidence            11111111222222222222222357999999999999655321 1112223357889999998765 789999999998


Q ss_pred             HHHHhh
Q psy12594        404 NILIPK  409 (542)
Q Consensus       404 ~nl~~~  409 (542)
                      .--.+.
T Consensus       599 ~vp~~r  604 (728)
T KOG4535|consen  599 SVPGKR  604 (728)
T ss_pred             cCCCCc
Confidence            765444

>KOG1517|consensus

Probab=98.49  E-value=7.1e-06  Score=85.72  Aligned_cols=239  Identities=15%  Similarity=0.122  Sum_probs=186.1

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC-
Q psy12594        142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN-  220 (542)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-  220 (542)
                      |..|+..|+.+..-.+......+.-|+.|.++++|+++..+++..-+.+=..|-.-++.+...++..++-..++..+.. 
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            3456667777777677767777777999999999999999999988888888877788888888888888888888875 


Q ss_pred             C--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHH
Q psy12594        221 D--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDG  296 (542)
Q Consensus       221 ~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~  296 (542)
                      .  +++-|..++.+|+.++.+-.-.++...+.+.+. .+..|.++ .+-++.-++-||+.|-.+.+.....=.+.++.+.
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence            2  578999999999999998777778888888899 88999886 6888999999999998777665554456788999


Q ss_pred             HHHhhhcCCccchHHHHHHHhHhhcC----ChHHHHHH------------HhhCch---HHHHHhhcCCChhhHHHHHHH
Q psy12594        297 LLRLIDCNGGYNSLPAIMALGYMSAQ----SEQIAEQI------------IELQGV---GSLQTILQCPHKEQLQVAAAW  357 (542)
Q Consensus       297 Lv~lL~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~  357 (542)
                      |..+|.++-++||.+|+.+||.+...    .++.....            ++....   -.++.++..++ +-++.+..-
T Consensus       647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs-plvr~ev~v  725 (1387)
T KOG1517|consen  647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS-PLVRTEVVV  725 (1387)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc-hHHHHHHHH
Confidence            99999999999999999999998764    22222221            222222   25566666654 588888999


Q ss_pred             HHHHhhcCChHHHHHHHHcCChHH
Q psy12594        358 TLGQIGKHSVDNVTALCEENVLST  381 (542)
Q Consensus       358 ~L~~l~~~~~~~~~~l~~~~~l~~  381 (542)
                      +|..++.+...+...+.-+...+.
T Consensus       726 ~ls~~~~g~~~~~~~va~n~~~~~  749 (1387)
T KOG1517|consen  726 ALSHFVVGYVSHLKVVAGNYLLPE  749 (1387)
T ss_pred             HHHHHHHhhHHHhHHHhhhhcccc
Confidence            999998888777666655444444

>KOG1058|consensus

Probab=98.49  E-value=9.1e-05  Score=75.17  Aligned_cols=346  Identities=15%  Similarity=0.112  Sum_probs=194.8

Q ss_pred             hccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q psy12594         93 LTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPL  172 (542)
Q Consensus        93 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  172 (542)
                      |+++|+.+|-..+++|+.|-.  ++.-    ...+|.+...|++.++-+|..|..++..+-.....    ++. .+-+.+
T Consensus       108 LQHPNEyiRG~TLRFLckLkE--~ELl----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~p-DapeLi  176 (948)
T KOG1058|consen  108 LQHPNEYIRGSTLRFLCKLKE--PELL----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LIP-DAPELI  176 (948)
T ss_pred             ccCchHhhcchhhhhhhhcCc--HHHh----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hcC-ChHHHH
Confidence            456777777777766666532  1221    24667777888888888888888777776542111    111 111222


Q ss_pred             HHhc-cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594        173 VQIL-ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA  251 (542)
Q Consensus       173 ~~ll-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  251 (542)
                      -.+| .+.++..+++|...|...   +++......     ..-+.-+.+.++.++-..+..+...|...+..+.     .
T Consensus       177 ~~fL~~e~DpsCkRNAFi~L~~~---D~ErAl~Yl-----~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~  243 (948)
T KOG1058|consen  177 ESFLLTEQDPSCKRNAFLMLFTT---DPERALNYL-----LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----R  243 (948)
T ss_pred             HHHHHhccCchhHHHHHHHHHhc---CHHHHHHHH-----HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----H
Confidence            2222 344677777775544432   343322211     1111222234566777777777777765543332     4


Q ss_pred             hHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC-CccchHHHHHHHhHhhcCChHHHHH
Q psy12594        252 TTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN-GGYNSLPAIMALGYMSAQSEQIAEQ  329 (542)
Q Consensus       252 ~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~  329 (542)
                      .+. +..+|.+.++.++..|+..|..|+.. |...+.     ....+++++... +..+..-.+--|..+...+....+ 
T Consensus       244 ~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-  316 (948)
T KOG1058|consen  244 YIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-  316 (948)
T ss_pred             HHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-
Confidence            567 88899999999999999999888844 333221     223455555443 334444444444444433222211 


Q ss_pred             HHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       330 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                          +.+--++.+|.+ ++-+++..+......|+.. +-+....++...+...--.  . .+.+...|..-..++..+..
T Consensus       317 ----~l~mDvLrvLss-~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e-~d~~~~yRqlLiktih~cav  388 (948)
T KOG1058|consen  317 ----GLIMDVLRVLSS-PDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--E-SDDNGKYRQLLIKTIHACAV  388 (948)
T ss_pred             ----HHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--c-cccchHHHHHHHHHHHHHhh
Confidence                444456677776 4567888887766666543 3333322222211111000  0 01112345555566666543


Q ss_pred             h-----CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcCCCCcHH-HHHHHHhccCc
Q psy12594        409 K-----CENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIA-PHLKTINACFP  480 (542)
Q Consensus       409 ~-----~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~~~~~~~-~a~~~l~~~~~  480 (542)
                      +     +.+++.|++.+. +.++.....++..+..++.+.|+-|..+.+. -++.+-.+ ....+. -++|+++.|-.
T Consensus       389 ~Fp~~aatvV~~ll~fis-D~N~~aas~vl~FvrE~iek~p~Lr~~ii~~-l~~~~~~i-rS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  389 KFPEVAATVVSLLLDFIS-DSNEAAASDVLMFVREAIEKFPNLRASIIEK-LLETFPQI-RSSKICRGALWILGEYCE  463 (948)
T ss_pred             cChHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhCchHHHHHHHH-HHHhhhhh-cccccchhHHHHHHHHHh
Confidence            3     345788999998 8888888888999998888888887776654 22222222 344444 48888888864

>KOG1077|consensus

Probab=98.48  E-value=0.00056  Score=69.13  Aligned_cols=368  Identities=13%  Similarity=0.123  Sum_probs=202.2

Q ss_pred             hhhcCC--ChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc
Q psy12594         48 PLLADK--VPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED  124 (542)
Q Consensus        48 ~lL~s~--~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  124 (542)
                      ++|-|.  .+-+++.|+.+|.+|.  .. ++...   ..++...++.+|.+.+-.+...+...+..++...++..+..-.
T Consensus       153 KlLvS~~~~~~vkqkaALclL~L~--r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~  227 (938)
T KOG1077|consen  153 KLLVSGSSMDYVKQKAALCLLRLF--RKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP  227 (938)
T ss_pred             HHHhCCcchHHHHHHHHHHHHHHH--hcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence            555443  3567888888888887  43 33322   2357788899998877777777777887787766555442111


Q ss_pred             CChHHHHhhhc-------------CCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhccCC----C---HhH
Q psy12594        125 KDLDSIISSLH-------------DFDPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASP----Q---LSL  183 (542)
Q Consensus       125 g~v~~Lv~lL~-------------~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~----~---~~~  183 (542)
                      .++..|.+...             -+.|.++...++.|.+.-. .++..+..+.+  +++.++...+++    +   ...
T Consensus       228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na  305 (938)
T KOG1077|consen  228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNA  305 (938)
T ss_pred             HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhh
Confidence            12222222211             1347788778777777642 22333333322  233444444422    1   233


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-C
Q psy12594        184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-Y  261 (542)
Q Consensus       184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~  261 (542)
                      +.+.+.-.-+++.+-......+  ...+..|.+++.+....+|..++..++.|+.... ..+.+..+  .+ ++..|+ .
T Consensus       306 ~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkte  380 (938)
T KOG1077|consen  306 KNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTE  380 (938)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccc
Confidence            3444444445554332222222  3556788899999999999999999999998753 44444433  67 888898 6


Q ss_pred             CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC-ChHHHHHHHhhCchHHHH
Q psy12594        262 PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ-SEQIAEQIIELQGVGSLQ  340 (542)
Q Consensus       262 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~  340 (542)
                      .|..+|+.++..|..+|..+  +++.     ++..++++|.+.+..+++..+.-+.-|+.. ..+..      -.+..++
T Consensus       381 rDvSirrravDLLY~mcD~~--Nak~-----IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~------WyVdviL  447 (938)
T KOG1077|consen  381 RDVSIRRRAVDLLYAMCDVS--NAKQ-----IVAELLQYLETADYSIREEIVLKVAILAEKYATDYS------WYVDVIL  447 (938)
T ss_pred             cchHHHHHHHHHHHHHhchh--hHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcc------hhHHHHH
Confidence            69999999999999999543  3332     345788999998888887766555545431 11111      1233333


Q ss_pred             HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH---HhhCCC--chh
Q psy12594        341 TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL---IPKCEN--PKE  415 (542)
Q Consensus       341 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl---~~~~~~--i~~  415 (542)
                      ++++-..+ .+-...-+-+..+..++++..... .    ..+.+.|..+.-++.+-+.+.+.|+.+   +..-.-  -..
T Consensus       448 qLiriagd-~vsdeVW~RvvQiVvNnedlq~ya-a----k~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~  521 (938)
T KOG1077|consen  448 QLIRIAGD-YVSDEVWYRVVQIVVNNEDLQGYA-A----KRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAV  521 (938)
T ss_pred             HHHHHhcc-cccHHHHHHhheeEecchhhhHHH-H----HHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHH
Confidence            44332221 223333334445545554432221 1    233444444332334555555555544   222111  122


Q ss_pred             hHHhhcC---CCCHHHHHHHHHHHHhhCCCChhh
Q psy12594        416 LEQMLLG---NVSEELLASILCAFAKILPCDPVA  446 (542)
Q Consensus       416 L~~lL~~---~~~~~v~~~~l~~l~~ll~~~~~~  446 (542)
                      +..+|..   ..++-.+...+....+++...|+.
T Consensus       522 qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi  555 (938)
T KOG1077|consen  522 QFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEI  555 (938)
T ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHHHhhChhh
Confidence            3334431   334445555555655555555543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=2.3e-06  Score=83.07  Aligned_cols=191  Identities=11%  Similarity=0.118  Sum_probs=149.1

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC
Q psy12594        143 ANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE  222 (542)
Q Consensus       143 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~  222 (542)
                      ..++.+|..+++.-...|..+.+..+++.|+++|.+|+..+.-.+...++|+.-.-...+..+.+.+++..++.++.+.|
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            34455666777766667777788888999999999988878888888999988766778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhh-HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHH---HHHHHh----cCC
Q psy12594        223 VNVKADAFLCLADIAKDSPSL-ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRL---ANLVVL----AGG  293 (542)
Q Consensus       223 ~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~----~~~  293 (542)
                      ..+|....|.+..+..++.+. +-.+....++. ++++..+++-.++..++..|+|++++...+   .....+    .-.
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            999999999999998765433 33555667788 999999999999999999999998754332   111111    124


Q ss_pred             HHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594        294 LDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL  333 (542)
Q Consensus       294 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  333 (542)
                      +..+...+...+|-.....+.+|-+++..++...+.+++.
T Consensus       567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q  606 (743)
T COG5369         567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ  606 (743)
T ss_pred             HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence            5677777888888888888999988888777776666554

>KOG2259|consensus

Probab=98.44  E-value=6.6e-06  Score=81.98  Aligned_cols=261  Identities=14%  Similarity=0.117  Sum_probs=166.1

Q ss_pred             CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHH---HHHhc--CCH
Q psy12594        125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL---DGIVK--HSP  199 (542)
Q Consensus       125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L---~nl~~--~~~  199 (542)
                      +++..+..+..+.|+.+|..|+..|..+.... ...+.     +....++.+++++..+|..|+..+   +|.+-  ...
T Consensus       198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~  271 (823)
T KOG2259|consen  198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER  271 (823)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            34555888888899999999999888887622 22222     256678899999999999885554   45441  001


Q ss_pred             H-HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhh-cCCChhHHHH-HHHHHH
Q psy12594        200 E-LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHL-TYPHGLVQKN-AATLLR  275 (542)
Q Consensus       200 ~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL-~~~~~~v~~~-a~~~L~  275 (542)
                      + ....+. ..+...+...+.+.+..+|..|+.+|+.+-.-+.++.........+. +-..= .+..+.-... .-|-=+
T Consensus       272 e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  272 ESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence            1 111122 23456777888888899999999999988665544443333222222 11100 0000000000 000000


Q ss_pred             -HHhcC-----ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChh
Q psy12594        276 -DMCKH-----NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE  349 (542)
Q Consensus       276 -~L~~~-----~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  349 (542)
                       .....     ..+....++..|+...++.-+.++-.++|.+|+..++.|+...+....     ..+..|++++.++ ..
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~  424 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IE  424 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HH
Confidence             00000     112233456678888888888888888999999999999998887664     4677899999884 46


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594        350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL  406 (542)
Q Consensus       350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl  406 (542)
                      .+|..|.++|..|+.+      ..++..-++.++..|.+.  ++++|.+.-..|++.
T Consensus       425 ~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVH------LAIREEQLRQILESLEDR--SVDVREALRELLKNA  473 (823)
T ss_pred             HHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc
Confidence            8999999999998654      223445667888888877  579998776666654

>KOG0567|consensus

Probab=98.41  E-value=2.9e-05  Score=69.26  Aligned_cols=252  Identities=16%  Similarity=0.198  Sum_probs=166.2

Q ss_pred             HHHHhhhcC--CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         44 DLIVPLLAD--KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        44 ~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      ..+.+.|..  ..-.-+..|+..|+++.  .          .+.+..+.+...+++...+...+++|+.+...       
T Consensus         6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~--~----------~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-------   66 (289)
T KOG0567|consen    6 ETIGNILVNKSQPLQNRFRALFNLRNLL--G----------PAAIKAITKAFIDDSALLKHELAYVLGQMQDE-------   66 (289)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHhhhccC--C----------hHHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence            344445543  23345667777777777  2          23366677777777777888888898888744       


Q ss_pred             hhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594        122 IEDKDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP  199 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~  199 (542)
                         .+++.|+..|.+.+  |.+|+.|..+|+.+.. . .         .++.+-++.+++..++++.+..++..+-..+.
T Consensus        67 ---~Av~~l~~vl~desq~pmvRhEAaealga~~~-~-~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   67 ---DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P-E---------SLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             ---hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h-h---------hHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence               48999999998765  8999999999999872 2 2         37778888877778888888888876643111


Q ss_pred             HHH-------HHh-----hhCCChHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCCh
Q psy12594        200 ELA-------ESA-----SDCDVIPLLIKALNNDE--VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHG  264 (542)
Q Consensus       200 ~~~-------~~~-----~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~  264 (542)
                      -..       ..+     ...+-+.-+-..+.+.+  .--|..+...|.|+...           ..+. +++-+..++.
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E-----------eaI~al~~~l~~~Sa  201 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE-----------EAINALIDGLADDSA  201 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH-----------HHHHHHHHhcccchH
Confidence            000       000     01122444444444332  22455566666665332           2355 7777888888


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594        265 LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI  342 (542)
Q Consensus       265 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  342 (542)
                      -.|..++.+|+.|-.           .-.++.|...|..  +++-+|..|+.+||.++..           ..++.|.++
T Consensus       202 lfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~  259 (289)
T KOG0567|consen  202 LFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEY  259 (289)
T ss_pred             HHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHH
Confidence            899999999988753           3445666666655  4566999999999988653           456777888


Q ss_pred             hcCCChhhHHHHHHHHHHHh
Q psy12594        343 LQCPHKEQLQVAAAWTLGQI  362 (542)
Q Consensus       343 l~~~~~~~v~~~a~~~L~~l  362 (542)
                      +..+ ++-+++.+..+|..+
T Consensus       260 ~~D~-~~vv~esc~valdm~  278 (289)
T KOG0567|consen  260 LGDE-ERVVRESCEVALDML  278 (289)
T ss_pred             cCCc-HHHHHHHHHHHHHHH
Confidence            8774 456777777766555

>KOG1943|consensus

Probab=98.38  E-value=0.00022  Score=75.52  Aligned_cols=343  Identities=15%  Similarity=0.101  Sum_probs=203.4

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      +++..|...+++.|..+|-.|++.+++++++-..+..+.     ++...++++.. +++..-..++-+|+.++...--..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            677788888899999999999999999994333444443     44566666654 345666688999999885431111


Q ss_pred             hHhhcCChHHHHhhhcCC--------CHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhccCCCHhHHHHHHHH
Q psy12594        120 GLIEDKDLDSIISSLHDF--------DPDTRANAALALGGLAKDNKHF-AERIVQCGALPPLVQILASPQLSLKHAAAFA  190 (542)
Q Consensus       120 ~~~~~g~v~~Lv~lL~~~--------~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~  190 (542)
                      .. -..++|.++..|.-+        ...+|..|+.+++.+++..... -+.+++.=.-..|+..+-+++..+|++|..+
T Consensus       416 s~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  416 SL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            10 013566666655322        2579999999999998644331 1222222223345566777888999999888


Q ss_pred             HHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHh-hcCCChhHHH
Q psy12594        191 LDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEH-LTYPHGLVQK  268 (542)
Q Consensus       191 L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~l-L~~~~~~v~~  268 (542)
                      +-......+..      ..+++. +..........+.++-..+..-....+.+..     .++. ++.. +.+-|+.+++
T Consensus       495 lqE~VGR~~n~------p~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~-----~~f~~L~t~Kv~HWd~~ire  562 (1133)
T KOG1943|consen  495 LQENVGRQGNF------PHGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYRE-----PVFNHLLTKKVCHWDVKIRE  562 (1133)
T ss_pred             HHHHhccCCCC------CCchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHH-----HHHHHHHhcccccccHHHHH
Confidence            87655421100      122222 1111112233444443333322222222333     2333 3333 6667999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHH-------HHHHh---hCchHH
Q psy12594        269 NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA-------EQIIE---LQGVGS  338 (542)
Q Consensus       269 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-------~~~~~---~~~l~~  338 (542)
                      .++++|.+|+...|+...    ...+++++....+.+...+.....+.+.+........       +..+.   .-..+.
T Consensus       563 laa~aL~~Ls~~~pk~~a----~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~  638 (1133)
T KOG1943|consen  563 LAAYALHKLSLTEPKYLA----DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPI  638 (1133)
T ss_pred             HHHHHHHHHHHhhHHhhc----ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHH
Confidence            999999999987776543    5788888888888888766655555555443211111       11111   112222


Q ss_pred             HHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        339 LQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       339 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ....+..+...-++...+..+.++....+...+.....+.-..+.+.+.++  + .+|..|.|+++.+..
T Consensus       639 ~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~--n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  639 CDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP--N-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch--H-HHHHHHHHHHHHHHH
Confidence            233333332346777888888888776666555555555555566666443  2 799999999999863

>KOG0211|consensus

Probab=98.37  E-value=0.00018  Score=75.81  Aligned_cols=384  Identities=13%  Similarity=0.106  Sum_probs=247.5

Q ss_pred             hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594         39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      +....+...++.++..+.++..++.-+++++  ..  ........+.++.+..+..++...++..|...+.++...-...
T Consensus       235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a--~~--~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~  310 (759)
T KOG0211|consen  235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIA--KV--LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD  310 (759)
T ss_pred             HHHHHHHHHhhccccchhhHHHHHhhhHHHH--HH--HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence            3444555566667778889998888888888  43  2225557788889999988888889998888888765321111


Q ss_pred             hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                      . -....+.+.+++..++.+..++.........+...   ..........++....++++...+.+.+++.-...++...
T Consensus       311 ~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l  386 (759)
T KOG0211|consen  311 D-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSA---VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL  386 (759)
T ss_pred             h-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHH---hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence            0 12234678888888888877777666655555421   1112222244777888888888888888777777766532


Q ss_pred             H-HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        199 P-ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       199 ~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                      . +....+.....+|.+..+..+.+..++...+.....+.--.+   ..-.-....| ++..+++.++.|+.+..+.+..
T Consensus       387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~  463 (759)
T KOG0211|consen  387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLIDKLSL  463 (759)
T ss_pred             CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence            2 233455556678888888888888888888777766654332   1111134566 7778888899999999987766


Q ss_pred             HhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594        277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA  356 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  356 (542)
                      +-......-........+|.++.+-....+.++.+.++.+..++....   ..+.+...-+.+...+.+ ....++..|+
T Consensus       464 ~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa  539 (759)
T KOG0211|consen  464 LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD-HVYSIREAAA  539 (759)
T ss_pred             HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh-hHHHHHHHHH
Confidence            543322222223344567777777777778888888888877765422   233333344444444444 3457888888


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------CCchhhHHhhcCCCCHHHH
Q psy12594        357 WTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------ENPKELEQMLLGNVSEELL  429 (542)
Q Consensus       357 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------~~i~~L~~lL~~~~~~~v~  429 (542)
                      ..+..++......   -.....++.++....+++  --.|.....++.-+..-.       ..+|.+..+.. +..++|+
T Consensus       540 ~~l~~l~~~~G~~---w~~~~~i~k~L~~~~q~~--y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~-D~vanVR  613 (759)
T KOG0211|consen  540 RNLPALVETFGSE---WARLEEIPKLLAMDLQDN--YLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVK-DPVANVR  613 (759)
T ss_pred             HHhHHHHHHhCcc---hhHHHhhHHHHHHhcCcc--cchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhcc-CCchhhh
Confidence            8877765332210   011224556566555542  367777777776554332       34788888888 8888999


Q ss_pred             HHHHHHHHhhCCCC
Q psy12594        430 ASILCAFAKILPCD  443 (542)
Q Consensus       430 ~~~l~~l~~ll~~~  443 (542)
                      ..++..+..+.+.-
T Consensus       614 ~nvak~L~~i~~~L  627 (759)
T KOG0211|consen  614 INVAKHLPKILKLL  627 (759)
T ss_pred             hhHHHHHHHHHhhc
Confidence            99999988887654

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=3.8e-06  Score=81.65  Aligned_cols=290  Identities=11%  Similarity=0.061  Sum_probs=189.5

Q ss_pred             HHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCC
Q psy12594         60 AALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDF  137 (542)
Q Consensus        60 ~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~  137 (542)
                      +++..|..++  .. .-.+.-+.+..+.+.|++.|+.++..+..-+...+++..-.-++.+. +...|.+..++.++.+.
T Consensus       408 a~~l~LkS~S--rSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         408 AIVLFLKSMS--RSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHhh--HHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            3445566665  44 56677777888999999999988888888888888887655557777 99999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH---HHHhhhCC----
Q psy12594        138 DPDTRANAALALGGLAKDNKHF-AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL---AESASDCD----  209 (542)
Q Consensus       138 ~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~---~~~~~~~~----  209 (542)
                      |..+|....|++.++.....+. +-.++..-++..++.+..++.-.++.+++..|.|+..++..+   .+..+...    
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            9999999999999998654432 335556666999999999999999999999999999854331   22111111    


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc-hHH-HHHhhc----C-----C--ChhHHHHHHHHHHH
Q psy12594        210 VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA-TTL-AVEHLT----Y-----P--HGLVQKNAATLLRD  276 (542)
Q Consensus       210 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~-L~~lL~----~-----~--~~~v~~~a~~~L~~  276 (542)
                      ....|++.+...+|-.....+..|.+++..+.+....+.+.. .+. +...|.    .     +  .+.+...-.....+
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            235666777766666666678889888887766666665533 232 222221    1     1  11121111122222


Q ss_pred             HhcCChHHHHHHHhcCCHHHHHHhh----------hcCCccchHHHHHHHhHhhc---------CChHHHHHHHhhCchH
Q psy12594        277 MCKHNLRLANLVVLAGGLDGLLRLI----------DCNGGYNSLPAIMALGYMSA---------QSEQIAEQIIELQGVG  337 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~~i~~Lv~lL----------~~~~~~~~~~a~~~L~~l~~---------~~~~~~~~~~~~~~l~  337 (542)
                      +..+          .+.+.+.+..-          ..++.+...++.|.+.|+.-         ...+.++.+.+.|+-+
T Consensus       646 l~e~----------~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e  715 (743)
T COG5369         646 LSEN----------SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIRE  715 (743)
T ss_pred             cccc----------ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHH
Confidence            2221          13333333211          11233466677777777541         2225666777767766


Q ss_pred             HHHHhhcCCChhhHHHHHHHHHHHh
Q psy12594        338 SLQTILQCPHKEQLQVAAAWTLGQI  362 (542)
Q Consensus       338 ~L~~ll~~~~~~~v~~~a~~~L~~l  362 (542)
                      .+..+..++ ...+|+.+--+|.++
T Consensus       716 ~l~k~q~~~-Sl~vrek~~taL~~l  739 (743)
T COG5369         716 WLVKIQAKD-SLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHhccC-cHHHHHHHHHHHHhh
Confidence            666666664 457888888777766

>KOG0211|consensus

Probab=98.34  E-value=7.4e-05  Score=78.56  Aligned_cols=399  Identities=14%  Similarity=0.107  Sum_probs=247.9

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK   95 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~   95 (542)
                      +|+.+.+-+.+.+.--.  ......+.+|.+..+..++...+|..|...+..+....+.+. .  ....+.+.++....+
T Consensus       253 Vr~~~a~~l~~~a~~~~--~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d--~~~~~~~~l~~~~~d  327 (759)
T KOG0211|consen  253 VRRAVASNLGNIAKVLE--SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-D--VVKSLTESLVQAVED  327 (759)
T ss_pred             hHHHHHhhhHHHHHHHH--HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-h--hhhhhhHHHHHHhcC
Confidence            45555565666555222  255667899999999998889999999999998883333221 1  123467788888888


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHH
Q psy12594         96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQ  174 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~  174 (542)
                      .+..++.........+...-..  .......++....++++...+.+...+.-...++. .+......+....++|.+..
T Consensus       328 ~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~  405 (759)
T KOG0211|consen  328 GSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQV  405 (759)
T ss_pred             hhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHH
Confidence            8888888877776666532111  11122356777888887777777666655555542 23233455556666888888


Q ss_pred             hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594        175 ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL  254 (542)
Q Consensus       175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  254 (542)
                      +..+.+..++.+.+....++.--.+.  ..-+ ....|.+...+++..+.++.+..+.+..+-......-........+|
T Consensus       406 lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp  482 (759)
T KOG0211|consen  406 LVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLP  482 (759)
T ss_pred             HHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhh
Confidence            88888888888887777766543331  1111 44567888888888999999999888666544332223344456667


Q ss_pred             -HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594        255 -AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL  333 (542)
Q Consensus       255 -L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  333 (542)
                       +..+-......++....+.+..++...-  . .+.+...-+.+...+.+....++.+|...+..++....  .+. ...
T Consensus       483 ~i~el~~d~~wRvr~ail~~ip~la~q~~--~-~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w-~~~  556 (759)
T KOG0211|consen  483 AIVELAEDLLWRVRLAILEYIPQLALQLG--V-EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEW-ARL  556 (759)
T ss_pred             hhhhhccchhHHHHHHHHHHHHHHHHhhh--h-HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cch-hHH
Confidence             6666666677888888888777764332  1 12222223333344444455678888877776664222  111 112


Q ss_pred             CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh----
Q psy12594        334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK----  409 (542)
Q Consensus       334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~----  409 (542)
                      ..++.++.....+ .-..|...+.++.-++.   -.-+.+.....+|.+..+..++  .++||..++..|..+...    
T Consensus       557 ~~i~k~L~~~~q~-~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~~  630 (759)
T KOG0211|consen  557 EEIPKLLAMDLQD-NYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDES  630 (759)
T ss_pred             HhhHHHHHHhcCc-ccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcchH
Confidence            3455555555553 23566666666665531   2233455556889999998887  469999999998888532    


Q ss_pred             ---CCCchhhHHhhcCCCCHHHHHHHHHHHH
Q psy12594        410 ---CENPKELEQMLLGNVSEELLASILCAFA  437 (542)
Q Consensus       410 ---~~~i~~L~~lL~~~~~~~v~~~~l~~l~  437 (542)
                         ....|.+..+.+ +.+.++...+..++.
T Consensus       631 ~~~~~v~pll~~L~~-d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  631 VRDEEVLPLLETLSS-DQELDVRYRAILAFG  660 (759)
T ss_pred             HHHHHHHHHHHHhcc-CcccchhHHHHHHHH
Confidence               223455555555 666666555544443

>KOG1060|consensus

Probab=98.33  E-value=0.00021  Score=73.02  Aligned_cols=367  Identities=14%  Similarity=0.090  Sum_probs=186.9

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhh
Q psy12594         44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIE  123 (542)
Q Consensus        44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  123 (542)
                      ..+-+-|++.++.+|..|+++|..+-  ..      ++..=.+-.+-++..+..+.+|..|+.++..+=+-+++...   
T Consensus       111 ntfQk~L~DpN~LiRasALRvlSsIR--vp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~---  179 (968)
T KOG1060|consen  111 NTFQKALKDPNQLIRASALRVLSSIR--VP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD---  179 (968)
T ss_pred             HHHHhhhcCCcHHHHHHHHHHHHhcc--hh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH---
Confidence            33444455566666666666655554  11      00000111223344456677777777777766544433322   


Q ss_pred             cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC---HH
Q psy12594        124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS---PE  200 (542)
Q Consensus       124 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~---~~  200 (542)
                       ..++.+-.+|.+.+|.+.-.|+.+...++-   +..+.+.+.  ...+++++.+-+.=-|......|..-|++.   |.
T Consensus       180 -qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIHkn--yrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~  253 (968)
T KOG1060|consen  180 -QLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIHKN--YRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT  253 (968)
T ss_pred             -HHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhhHH--HHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence             233455556666667777667666666653   212222211  445555555433223333333443333311   10


Q ss_pred             HHHH---------------------hhhCCCh----HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-
Q psy12594        201 LAES---------------------ASDCDVI----PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-  254 (542)
Q Consensus       201 ~~~~---------------------~~~~~~i----~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-  254 (542)
                      ....                     +....-+    ...-.++.+.++.+.-.++.+++.++-... .      ..++. 
T Consensus       254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-~------~~i~ka  326 (968)
T KOG1060|consen  254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-V------TKIAKA  326 (968)
T ss_pred             ccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-H------HHHHHH
Confidence            0000                     0000111    222345557788888999999999875531 1      24566 


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCChHH-----------------HH--------HHHhcC----CHHHHHHhhhcCC
Q psy12594        255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRL-----------------AN--------LVVLAG----GLDGLLRLIDCNG  305 (542)
Q Consensus       255 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~-----------------~~--------~~~~~~----~i~~Lv~lL~~~~  305 (542)
                      |+.+|.++ .+++...+..+..++...+..                 .+        .+.+..    ++..+..++++.+
T Consensus       327 LvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d  405 (968)
T KOG1060|consen  327 LVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSD  405 (968)
T ss_pred             HHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc
Confidence            77776654 334444444444444332211                 10        111112    2344455666666


Q ss_pred             ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHH
Q psy12594        306 GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSK  385 (542)
Q Consensus       306 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~l  385 (542)
                      .++...++.+||..+.......     ...+..|+.++.++ +..+..++...+..|...+|..-..     ++..|.++
T Consensus       406 ~~faa~aV~AiGrCA~~~~sv~-----~tCL~gLv~Llssh-de~Vv~eaV~vIk~Llq~~p~~h~~-----ii~~La~l  474 (968)
T KOG1060|consen  406 RSFAAAAVKAIGRCASRIGSVT-----DTCLNGLVQLLSSH-DELVVAEAVVVIKRLLQKDPAEHLE-----ILFQLARL  474 (968)
T ss_pred             hhHHHHHHHHHHHHHHhhCchh-----hHHHHHHHHHHhcc-cchhHHHHHHHHHHHHhhChHHHHH-----HHHHHHHH
Confidence            6777788888887765443322     24566788888885 4578888888888887776653222     34556666


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHhhC-CCch----hhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhh
Q psy12594        386 ITQTCVSDNLKSKCKNALNILIPKC-ENPK----ELEQMLLGNVSEELLASILCAFAKILPCDPVARR  448 (542)
Q Consensus       386 l~~~~~~~~v~~~a~~aL~nl~~~~-~~i~----~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~  448 (542)
                      +.+-. -+..|....|.++-.+... ...|    .+..-+. +..+.+...++....++.-.+.++-+
T Consensus       475 ldti~-vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs-~E~~evKlQILnL~aKLyl~~~~~~k  540 (968)
T KOG1060|consen  475 LDTIL-VPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFS-DEGDEVKLQILNLSAKLYLTNIDQTK  540 (968)
T ss_pred             hhhhh-hhhhhceeeeeehhhhhhcchhchHHHHHHHHhhc-cccchhhHHHHHhhhhheEechhhHH
Confidence            64432 2345555566655543221 1112    2222233 44556666777766666655554433

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.31  E-value=8.8e-05  Score=74.88  Aligned_cols=262  Identities=15%  Similarity=0.155  Sum_probs=180.5

Q ss_pred             HHHHHHhcCCCCchHHHHhCCchHHHHhhh----------cCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHH
Q psy12594         21 VQTMSAFADKPSTIHFLKDLNVVDLIVPLL----------ADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALV   89 (542)
Q Consensus        21 ~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL----------~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~L   89 (542)
                      +++|.-++.++.+...+....++..|..+-          .+.++.+...|+++|+|+.  .. +..++.+.+.|+.+.+
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~l--f~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNAL--FLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHH--hCCHHHHHHHHHcCcHHHH
Confidence            567888999999999999888888888776          2456899999999999999  76 8899999999999999


Q ss_pred             HHhhccC-----CHHHHHHHHHHHHHHhcCChhhhh-Hh-hcCChHHHHhhhcC-----------------CCHHHHHHH
Q psy12594         90 LKDLTKQ-----NKHYKKTALHMLTCVAQQDERCAG-LI-EDKDLDSIISSLHD-----------------FDPDTRANA  145 (542)
Q Consensus        90 v~~L~~~-----~~~~~~~a~~~L~~l~~~~~~~~~-~~-~~g~v~~Lv~lL~~-----------------~~~~~~~~a  145 (542)
                      +..|+..     +.++.....++|.-++...+..+. ++ +.+++..++..+..                 .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999865     788999999999888877666665 44 55777777766521                 134556778


Q ss_pred             HHHHHHhhcCChHHHH-HHHHc--CChHHHHHhc---cCC--CHhHHHHHHHHHHHHhcCCHHH-------HH----Hhh
Q psy12594        146 ALALGGLAKDNKHFAE-RIVQC--GALPPLVQIL---ASP--QLSLKHAAAFALDGIVKHSPEL-------AE----SAS  206 (542)
Q Consensus       146 ~~~L~~l~~~~~~~~~-~i~~~--g~i~~L~~ll---~~~--~~~~~~~a~~~L~nl~~~~~~~-------~~----~~~  206 (542)
                      ++.+.|+....+.... .....  .++..+..++   ..+  .......+..+|.|+--...+.       ..    ...
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            8899999854444222 11110  2233444442   111  2567778888888874322211       00    011


Q ss_pred             hCCChHHHHHhhcC----C----CHHHHHHHHHHHHHHhcCChhhHHHHHh---------------hchHH--HHHhhcC
Q psy12594        207 DCDVIPLLIKALNN----D----EVNVKADAFLCLADIAKDSPSLASTIAD---------------GATTL--AVEHLTY  261 (542)
Q Consensus       207 ~~~~i~~L~~ll~~----~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~---------------~~~i~--L~~lL~~  261 (542)
                      ....+..|+.+|..    .    -.+.....+.+|.++++.+...++.+..               ...++  |+.++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            22345666666641    1    1356777888899998876555554433               23344  8999999


Q ss_pred             CChhHHHHHHHHHHHHhcCChHH
Q psy12594        262 PHGLVQKNAATLLRDMCKHNLRL  284 (542)
Q Consensus       262 ~~~~v~~~a~~~L~~L~~~~~~~  284 (542)
                      ..+.++..+...|..||..++..
T Consensus       320 ~~~~~k~~vaellf~Lc~~d~~~  342 (446)
T PF10165_consen  320 PDPQLKDAVAELLFVLCKEDASR  342 (446)
T ss_pred             CCchHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999766543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG4646|consensus

Probab=98.27  E-value=7.4e-06  Score=64.93  Aligned_cols=112  Identities=19%  Similarity=0.213  Sum_probs=98.6

Q ss_pred             hhhHHH-HHHHHHH-----HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHH
Q psy12594          3 RKSVKN-SIDHYQR-----ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDI   76 (542)
Q Consensus         3 ~~~~~~-~~~~~~~-----~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~   76 (542)
                      |.+-.| ..++|+.     ++.+.+.-|+|++.||.|...+++.+++..++.-|..++......+...|++++  -++.+
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC--~d~~n   91 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC--LDKTN   91 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc--cChHH
Confidence            334444 4456654     577888899999999999999999999999999999999999999999999999  99999


Q ss_pred             HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh
Q psy12594         77 RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE  116 (542)
Q Consensus        77 ~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~  116 (542)
                      ...|.+.+++|.++..++++.......++.++..++....
T Consensus        92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R  131 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER  131 (173)
T ss_pred             HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc
Confidence            9999999999999999999999999999999999886553

>KOG4646|consensus

Probab=98.27  E-value=1.6e-05  Score=63.09  Aligned_cols=126  Identities=14%  Similarity=0.093  Sum_probs=106.3

Q ss_pred             hHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594        127 LDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA  205 (542)
Q Consensus       127 v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  205 (542)
                      +..|+.-.+ ..+.+.++....-|+|++. +|.+...+.+..+++.++..+..++..+.+.+...|+|+|- ++.+...+
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I   95 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFI   95 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHH
Confidence            444554443 4467888888888888887 66778999999999999999999999999999999999999 78899999


Q ss_pred             hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594        206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL  254 (542)
Q Consensus       206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  254 (542)
                      .+.+++|.++..++++...+...++.++..++...-..++.+....++.
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~  144 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR  144 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence            9999999999999999999999999999999887655666666555555

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.27  E-value=6.2e-05  Score=74.60  Aligned_cols=327  Identities=14%  Similarity=0.117  Sum_probs=192.5

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChH---HHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVD---IRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~---~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      ++...+++|++..|.+|..|+...+.|+  .--.   -...+.+.|.  .|.+.|....+++--..+.+++.+-+.. ..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~--~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~-~~  679 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLA--KVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVH-RF  679 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHH--HHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhh-cc
Confidence            4566778889999999999999888887  2211   0122333333  3566777778888777666666654221 11


Q ss_pred             hh--HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHH---HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHH
Q psy12594        119 AG--LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF---AERIVQCGALPPLVQILASPQLSLKHAAAFALDG  193 (542)
Q Consensus       119 ~~--~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n  193 (542)
                      +.  ---.|++|.|...|++....+....+..++.++...|++   ++.+.   +---|+++|++.+.++|+.|..+++-
T Consensus       680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~  756 (975)
T COG5181         680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGC  756 (975)
T ss_pred             cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence            11  113489999999999999999999999999998766652   22221   12247888888999999999999998


Q ss_pred             HhcCC-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594        194 IVKHS-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAA  271 (542)
Q Consensus       194 l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~  271 (542)
                      |+..- |        ..++..|++-|+..+-..|....-+++-.++.+..       ..++| |+.=...++..|+...+
T Consensus       757 Is~aiGP--------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvL  821 (975)
T COG5181         757 ISRAIGP--------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVL  821 (975)
T ss_pred             HHhhcCH--------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHH
Confidence            88721 2        22334444444433333333333334333332211       24566 66666666778888888


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHH--HHHHhhCchHHHH-HhhcCCCh
Q psy12594        272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA--EQIIELQGVGSLQ-TILQCPHK  348 (542)
Q Consensus       272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~-~ll~~~~~  348 (542)
                      .+++.+-....+....- -.-..|.|-..|.+.++..+..|...|..|+-+++...  ...+.  .+..|. +++..  .
T Consensus       822 kam~fmFeyig~~s~dY-vy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~--s  896 (975)
T COG5181         822 KAMCFMFEYIGQASLDY-VYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEP--S  896 (975)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCC--C
Confidence            88877764332222111 12445667778888898899999999999887654321  11111  222222 22222  2


Q ss_pred             hhHHHHHHHHHHHhhcCChHHHHHHHHcC-ChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        349 EQLQVAAAWTLGQIGKHSVDNVTALCEEN-VLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      +.+.......+-.+.        ..+..| .+..+.+-|-+++  ..|| ++.|..-|..
T Consensus       897 Phvi~~~~Eg~e~~~--------~~lg~g~~m~Yv~qGLFHPs--~~VR-k~ywtvyn~m  945 (975)
T COG5181         897 PHVIQSFDEGMESFA--------TVLGSGAMMKYVQQGLFHPS--STVR-KRYWTVYNIM  945 (975)
T ss_pred             cHHHHHHHHHHHHHH--------HHhccHHHHHHHHHhccCch--HHHH-HHHHHHHhhh
Confidence            344433333332221        112222 2355566666663  3455 5778777775

>KOG2734|consensus

Probab=98.21  E-value=0.0012  Score=63.40  Aligned_cols=239  Identities=14%  Similarity=0.154  Sum_probs=178.0

Q ss_pred             HHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--------hHHHHHHHhcCcHHHHH
Q psy12594         19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--------VDIRQEVLERNLVALVL   90 (542)
Q Consensus        19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--------~~~~~~i~~~~~l~~Lv   90 (542)
                      ..+|-+.-+++-|.....+++.++++.|+.||.+++.++....+..|..|....-        +...+.+++.++++.|+
T Consensus       103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            3578899999999999999999999999999999999999999999999983211        24567788889999999


Q ss_pred             HhhccCC------HHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHHH
Q psy12594         91 KDLTKQN------KHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFAE  161 (542)
Q Consensus        91 ~~L~~~~------~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~  161 (542)
                      +.+..=+      ..-...++.++-|+....+.... +++.|.+.-|+.-+...  -...+..|..+|.-+...+.+.+.
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            9876422      23345667778888888878877 88888888777644332  245667788888888877777777


Q ss_pred             HHHHcCChHHHHHhcc-----CC----CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHH
Q psy12594        162 RIVQCGALPPLVQILA-----SP----QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLC  232 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~-----~~----~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  232 (542)
                      ..-...++..+++-+.     +|    ..+.-++...+|+.+.. .++++..+....+++...-+++. ....+..++.+
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv  340 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV  340 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence            7777788998888763     22    25666777778887777 57788888878888877666664 45577788888


Q ss_pred             HHHHhcCCh--hhHHHHHhhchHH-HHHhh
Q psy12594        233 LADIAKDSP--SLASTIADGATTL-AVEHL  259 (542)
Q Consensus       233 L~~l~~~~~--~~~~~~~~~~~i~-L~~lL  259 (542)
                      |-....+.+  ++...+++..++. ++.+.
T Consensus       341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence            888776654  3444555555555 54443

>KOG1077|consensus

Probab=98.20  E-value=0.0021  Score=65.14  Aligned_cols=330  Identities=14%  Similarity=0.133  Sum_probs=197.7

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc
Q psy12594         46 IVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED  124 (542)
Q Consensus        46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  124 (542)
                      -++||+++-...++-.-..+.-|.  +. .+..+.     ++..+..-|.+.|+.....|+.+++++...+  ..+-   
T Consensus        79 aV~LLss~kysEKqIGYl~is~L~--n~n~dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~re--~~ea---  146 (938)
T KOG1077|consen   79 AVNLLSSNKYSEKQIGYLFISLLL--NENSDLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGSRE--MAEA---  146 (938)
T ss_pred             HHHHhhcCCccHHHHhHHHHHHHH--hcchHHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHHH---
Confidence            456666655444444555555555  22 222111     2334444566778888889999999986432  2221   


Q ss_pred             CChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594        125 KDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA  202 (542)
Q Consensus       125 g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~  202 (542)
                       .-+-+-++|-+++  +-++..|+-||..+-+.+|+..   -..+-...++.+|.+.+..+..++...+.-|+...|+..
T Consensus       147 -~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y  222 (938)
T KOG1077|consen  147 -FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY  222 (938)
T ss_pred             -hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence             1122335665554  7788999999999887665521   112446789999999888888888888888888776654


Q ss_pred             HHhhhCCChHHHHHhhcC-------------CCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCC--Ch-
Q psy12594        203 ESASDCDVIPLLIKALNN-------------DEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYP--HG-  264 (542)
Q Consensus       203 ~~~~~~~~i~~L~~ll~~-------------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~--~~-  264 (542)
                      ...+ ...+..|..+...             +.|=++...+++|.+.-... +..+.  .-..+++ ++...+.+  .. 
T Consensus       223 k~~~-~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~--~l~evl~~iLnk~~~~~~~k~  299 (938)
T KOG1077|consen  223 KTCL-PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRA--RLNEVLERILNKAQEPPKSKK  299 (938)
T ss_pred             hhhH-HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHH--HHHHHHHHHHhccccCccccc
Confidence            4333 2223333333321             23446777777777663221 11222  2224555 55555533  11 


Q ss_pred             ----hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHH
Q psy12594        265 ----LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQ  340 (542)
Q Consensus       265 ----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  340 (542)
                          ..+..++.-..+|+.+-...-+.+  ...+..|-.+|.+....+|--|+..+..|+..... .+.+-. . ...++
T Consensus       300 vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~-h-~d~Ii  374 (938)
T KOG1077|consen  300 VQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKK-H-QDTII  374 (938)
T ss_pred             hHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHH-H-HHHHH
Confidence                222233333334544432222222  24677888999999999999999999998876332 233333 2 77788


Q ss_pred             HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        341 TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       341 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ..|+.+.+..+|..|.-.|..+|..  ++.+.+     +.-+++.|.+.  +..+|++-+.-+.-+.+
T Consensus       375 ~sLkterDvSirrravDLLY~mcD~--~Nak~I-----V~elLqYL~tA--d~sireeivlKvAILaE  433 (938)
T KOG1077|consen  375 NSLKTERDVSIRRRAVDLLYAMCDV--SNAKQI-----VAELLQYLETA--DYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHhccccchHHHHHHHHHHHHHhch--hhHHHH-----HHHHHHHHhhc--chHHHHHHHHHHHHHHH
Confidence            8999778889999999999999643  344433     45567777765  34788876655554543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.19  E-value=3.4e-06  Score=53.82  Aligned_cols=41  Identities=37%  Similarity=0.647  Sum_probs=38.1

Q ss_pred             ChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594        156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       156 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~  196 (542)
                      ++++++.+++.|++|.|+++|+++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2734|consensus

Probab=98.18  E-value=0.00081  Score=64.45  Aligned_cols=229  Identities=15%  Similarity=0.123  Sum_probs=170.2

Q ss_pred             CChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC---------hHHHHHHHHcCChHHHHHhccCCC---
Q psy12594        114 QDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN---------KHFAERIVQCGALPPLVQILASPQ---  180 (542)
Q Consensus       114 ~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---------~~~~~~i~~~g~i~~L~~ll~~~~---  180 (542)
                      .-|+.-- +++.++++.|+.+|.+++.++-...+..|..+...+         ......+++.++++.|++-+..-+   
T Consensus       113 t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsv  192 (536)
T KOG2734|consen  113 TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESV  192 (536)
T ss_pred             cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcc
Confidence            3445554 889999999999999999999999999999887321         245677888899999999887644   


Q ss_pred             ---HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-
Q psy12594        181 ---LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-  254 (542)
Q Consensus       181 ---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-  254 (542)
                         ..-...++..+.|+..-.++.+..+++.|.+.-|+.-+...  -..-...|..+++-+-.++.+.+.....-.++. 
T Consensus       193 keea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~  272 (536)
T KOG2734|consen  193 KEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDV  272 (536)
T ss_pred             hhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHH
Confidence               33455677888999998899999999888888887755432  334556677778877777766777666667777 


Q ss_pred             HHHhhc-----CC----ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh-
Q psy12594        255 AVEHLT-----YP----HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE-  324 (542)
Q Consensus       255 L~~lL~-----~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-  324 (542)
                      ++.-+.     ++    ..+..++...+|+.+........ .+....+++-..-+++. ....+..++.+|-....+.+ 
T Consensus       273 lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~-~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~g  350 (536)
T KOG2734|consen  273 LLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRE-RFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEG  350 (536)
T ss_pred             HHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhh-hhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCc
Confidence            666553     21    35678888888888876555544 46666777666666665 44557788899988887766 


Q ss_pred             -HHHHHHHhhCchHHHHHhhc
Q psy12594        325 -QIAEQIIELQGVGSLQTILQ  344 (542)
Q Consensus       325 -~~~~~~~~~~~l~~L~~ll~  344 (542)
                       ..+..+++..++..+..++.
T Consensus       351 t~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  351 TPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             hHHHHHHHHHHhHHHHHHHHh
Confidence             77888888888888887766

>KOG0915|consensus

Probab=98.18  E-value=0.00092  Score=73.33  Aligned_cols=295  Identities=16%  Similarity=0.154  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC
Q psy12594        142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND  221 (542)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~  221 (542)
                      |.-|+.-++.++....+ +..-.-..+||.|.++=-+|++.+|.....+=..|..+.....+... ..++.-|+.-+.+.
T Consensus       974 k~GaAfGf~~i~~~a~~-kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen  974 KKGAAFGFGAIAKQAGE-KLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSK 1051 (1702)
T ss_pred             ccchhhchHHHHHHHHH-hhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccch
Confidence            44455556666532211 11111124588888888889999988777666666664444444433 45556666667778


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHHhhcCCChhHHHHHHH---HHHHHhcCChHHHHHHHhcCCHH
Q psy12594        222 EVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVEHLTYPHGLVQKNAAT---LLRDMCKHNLRLANLVVLAGGLD  295 (542)
Q Consensus       222 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~lL~~~~~~v~~~a~~---~L~~L~~~~~~~~~~~~~~~~i~  295 (542)
                      ...+|+.+|-||..|-+..+ ..+ +.+  ..+.. ++..+.+-.+.||..+-.   +|..++...-+...-.....++.
T Consensus      1052 ewRVReasclAL~dLl~g~~-~~~-~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRP-FDQ-VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred             hHHHHHHHHHHHHHHHcCCC-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence            89999999999999998764 222 221  24455 566666657778776544   44444422100000000112344


Q ss_pred             HHHHhhhc-----CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHH----------HHHHHHH
Q psy12594        296 GLLRLIDC-----NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV----------AAAWTLG  360 (542)
Q Consensus       296 ~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~----------~a~~~L~  360 (542)
                      .++.+|-+     .-+++|..++.++..++.+......... ...++.|++....-.+..+-.          +|+-.+.
T Consensus      1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R 1208 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLR 1208 (1702)
T ss_pred             HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHH
Confidence            44544433     3446888899999999877665433322 256666666665533222222          2222222


Q ss_pred             -HhhcCChH--HHHHHH---H----cCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC---------chhhHHhhc
Q psy12594        361 -QIGKHSVD--NVTALC---E----ENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN---------PKELEQMLL  421 (542)
Q Consensus       361 -~l~~~~~~--~~~~l~---~----~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~---------i~~L~~lL~  421 (542)
                       +.+.++|.  .....+   +    ...+|.++++++.+- .-..|..++..++-+..+++.         +..+...++
T Consensus      1209 ~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-gl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~ 1287 (1702)
T KOG0915|consen 1209 ASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-GLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAK 1287 (1702)
T ss_pred             HhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-CCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccc
Confidence             12222221  111111   1    147788888888764 456888889889888776532         334444445


Q ss_pred             CCCCHHHHHHHHHHHHhhCCCC
Q psy12594        422 GNVSEELLASILCAFAKILPCD  443 (542)
Q Consensus       422 ~~~~~~v~~~~l~~l~~ll~~~  443 (542)
                       +.++.+.+....+...++...
T Consensus      1288 -dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1288 -DRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred             -cccHHHHHHHHHHHHHHHhcC
Confidence             777778887777777776665

>PF05536 Neurochondrin: Neurochondrin

Probab=98.17  E-value=0.0004  Score=71.74  Aligned_cols=236  Identities=14%  Similarity=0.047  Sum_probs=168.0

Q ss_pred             hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH---HHHhhhCCChHHHHHhhcC-------CCHHHHHHHHHHHHHHhc
Q psy12594        169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPEL---AESASDCDVIPLLIKALNN-------DEVNVKADAFLCLADIAK  238 (542)
Q Consensus       169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~---~~~~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~  238 (542)
                      +...+++|+..+.+-|-.++..+.++...++..   ++.+.+.=+.+.+-++|..       +....+.-++.+|..+|.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            566788898888777888888999999866532   3357777777888888886       345688889999999998


Q ss_pred             CChhhHHHHHhhchHH-HHHhhcCCCh-hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHH
Q psy12594        239 DSPSLASTIADGATTL-AVEHLTYPHG-LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL  316 (542)
Q Consensus       239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L  316 (542)
                      .. +....-.--+-+| |+..+...+. .+...+..+|..++ ..++..+.+.+.|+++.|.+.+.+ .+.....|+.++
T Consensus        87 ~~-~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   87 DP-ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             Ch-hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            53 4442222236789 9999988866 99999999999999 778888889999999999999988 556678888888


Q ss_pred             hHhhcCChHHHHH---HHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH-----HHHHHHcCChHHHHHHHhc
Q psy12594        317 GYMSAQSEQIAEQ---IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN-----VTALCEENVLSTLLSKITQ  388 (542)
Q Consensus       317 ~~l~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~l~~L~~ll~~  388 (542)
                      .+++.........   -.-..+++.+-..+.... ...+...+..|..+....+..     ...-+-..+...+..++.+
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            8887643311110   000135556666666543 367778899999987665321     1222333456667777776


Q ss_pred             CCCChHHHHHHHHHHHHHHhh
Q psy12594        389 TCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       389 ~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      . ..+.-|..+......+++.
T Consensus       243 r-~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  243 R-LTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             C-CCHHHHHHHHHHHHHHHHH
Confidence            4 4677788777777777543

>KOG1789|consensus

Probab=98.16  E-value=0.00042  Score=72.93  Aligned_cols=314  Identities=16%  Similarity=0.163  Sum_probs=210.1

Q ss_pred             HHHHHHHHHHHHhcCChhhhhHh-----hcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q psy12594        100 YKKTALHMLTCVAQQDERCAGLI-----EDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLV  173 (542)
Q Consensus       100 ~~~~a~~~L~~l~~~~~~~~~~~-----~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  173 (542)
                      -...++.+|.|+....|+...+.     --|..+.+...+.. .++.++..|+.++..+.. +.++...+...|.+..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence            45678889999988887776632     23677888777764 468899999988877665 677889999999999999


Q ss_pred             HhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC---hhhHHHHH-
Q psy12594        174 QILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDS---PSLASTIA-  248 (542)
Q Consensus       174 ~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~-  248 (542)
                      .+|.+. |+.|+.++.+|..|++ +++......+.|++..+..++. +.++..|.+++..++.+..+.   |...-.++ 
T Consensus      1820 ~lLHS~-PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence            998854 6889999999999998 6777777788888888777766 557889999999999997643   21111111 


Q ss_pred             -------h--hchHH-HHHhhcCC--Ch------hHHHHHHHHHHHHhc--------CC------hHH------------
Q psy12594        249 -------D--GATTL-AVEHLTYP--HG------LVQKNAATLLRDMCK--------HN------LRL------------  284 (542)
Q Consensus       249 -------~--~~~i~-L~~lL~~~--~~------~v~~~a~~~L~~L~~--------~~------~~~------------  284 (542)
                             .  ....+ .++.+...  ++      ..+......+..+..        ++      |+.            
T Consensus      1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred             hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence                   0  11123 44555443  22      223333333333221        10      100            


Q ss_pred             ------HHHHHhc------------CCHHHHHHhhhcCCccc--hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhc
Q psy12594        285 ------ANLVVLA------------GGLDGLLRLIDCNGGYN--SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQ  344 (542)
Q Consensus       285 ------~~~~~~~------------~~i~~Lv~lL~~~~~~~--~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  344 (542)
                            ...+.+.            +.++.+.+++..+++..  ...-..++-.|....+.....+-..|-+|.++..+.
T Consensus      1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred             cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence                  0111111            13455566666655542  222233455566777888888888899999998888


Q ss_pred             CCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh-----------hCCCc
Q psy12594        345 CPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP-----------KCENP  413 (542)
Q Consensus       345 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~-----------~~~~i  413 (542)
                      ..+. .+-..|.+.|..++ .+.-.+..+.....+..++..++..   .+.---|+.+|..+.+           +++.+
T Consensus      2058 ~~n~-s~P~SaiRVlH~Ls-en~~C~~AMA~l~~i~~~m~~mkK~---~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2058 LQNT-SAPRSAIRVLHELS-ENQFCCDAMAQLPCIDGIMKSMKKQ---PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             hcCC-cCcHHHHHHHHHHh-hccHHHHHHhccccchhhHHHHHhc---chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            7553 66678999999994 4556677777777788888888865   2555567777777753           36778


Q ss_pred             hhhHHhhc
Q psy12594        414 KELEQMLL  421 (542)
Q Consensus       414 ~~L~~lL~  421 (542)
                      |.|..||.
T Consensus      2133 pyLL~LLd 2140 (2235)
T KOG1789|consen 2133 PYLLQLLD 2140 (2235)
T ss_pred             HHHHHHhc
Confidence            89988887

>KOG1240|consensus

Probab=98.16  E-value=4.9e-05  Score=80.91  Aligned_cols=283  Identities=14%  Similarity=0.076  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHh
Q psy12594         15 RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKD   92 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~   92 (542)
                      ..|..+++.|..++..-..-..+  ..++|.++.++.++++.||..|+.+|..+.....  +..-..+.-.=++|.|-.+
T Consensus       438 ~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l  515 (1431)
T KOG1240|consen  438 QTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL  515 (1431)
T ss_pred             hhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence            45778888888888743333223  4689999999999999999999999998883322  2222223233456666677


Q ss_pred             hcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q psy12594         93 LTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP  171 (542)
Q Consensus        93 L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  171 (542)
                      +.+ ....+|..-+..|..++...-   .+.+.+.-.....++++++.+.       .... ..+.+ .+.+++ ++-..
T Consensus       516 ~~d~~~~~vRiayAsnla~LA~tA~---rFle~~q~~~~~g~~n~~nset-------~~~~-~~~~~-~~~L~~-~V~~~  582 (1431)
T KOG1240|consen  516 LNDSSAQIVRIAYASNLAQLAKTAY---RFLELTQELRQAGMLNDPNSET-------APEQ-NYNTE-LQALHH-TVEQM  582 (1431)
T ss_pred             hccCccceehhhHHhhHHHHHHHHH---HHHHHHHHHHhcccccCccccc-------cccc-ccchH-HHHHHH-HHHHH
Confidence            766 445666666677777764221   1222111122222344433320       0000 00111 122221 22344


Q ss_pred             HHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh-hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy12594        172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESAS-DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADG  250 (542)
Q Consensus       172 L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  250 (542)
                      ...++.++++-+++.-+..|.-||.--    -... +.=+++.|+..|.+.|..+|..-...+..+|..-.   ..-++.
T Consensus       583 v~sLlsd~~~~Vkr~Lle~i~~LC~FF----Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~se  655 (1431)
T KOG1240|consen  583 VSSLLSDSPPIVKRALLESIIPLCVFF----GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSE  655 (1431)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHh----hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHH
Confidence            566777777788887777777766511    1111 12246899999999999999887777776654321   111345


Q ss_pred             chHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        251 ATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       251 ~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      .++| |..-|.+..+.|...|+++|.-|+...--....+  ...++....+|-+++..+|..++..|..+..
T Consensus       656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            7788 8888999999999999999999987543222222  2355666778889999999999998887754

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.11  E-value=6.7e-06  Score=52.44  Aligned_cols=41  Identities=27%  Similarity=0.436  Sum_probs=38.1

Q ss_pred             CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594        198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK  238 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  238 (542)
                      +++.+..+++.|++|.|++++++.++++++.++|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788899999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.07  E-value=0.0027  Score=66.56  Aligned_cols=167  Identities=20%  Similarity=0.222  Sum_probs=130.0

Q ss_pred             hcCCCHHHHHHHHH-HHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594        134 LHDFDPDTRANAAL-ALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP  212 (542)
Q Consensus       134 L~~~~~~~~~~a~~-~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~  212 (542)
                      +.+.++..|..|++ +++.+..+++ ..      -..+.+++.+.+.+.++++..-.-|.+.+...|+.....+     .
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLav-----N   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAV-----N   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHH-----H
Confidence            66666666666654 5666665444 21      2266778888888999999999999999998886554443     7


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594        213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA  291 (542)
Q Consensus       213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~  291 (542)
                      .+.+=++++++.+|..|+++++.+=.  ++...     .+++ +..++.++++.||+.|+-|+.++-+-+++...   +.
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~---~~  165 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH---EL  165 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhh---cc
Confidence            78888899999999999999987622  22222     5667 99999999999999999999999977776543   46


Q ss_pred             CCHHHHHHhhhcCCccchHHHHHHHhHhhcC
Q psy12594        292 GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ  322 (542)
Q Consensus       292 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  322 (542)
                      |.+..+..++.+.+|.+..+|+.++..+-..
T Consensus       166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         166 GLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            7888899999999999999999999887544

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.04  E-value=0.0017  Score=59.75  Aligned_cols=265  Identities=16%  Similarity=0.069  Sum_probs=163.9

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594        128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAES  204 (542)
Q Consensus       128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~~  204 (542)
                      +.|-++++.-++..|..|+.++.++.. .++.|..+... .+-..++..++..  ...+|.+.+.++.-++. ++...+.
T Consensus       152 eyLgkl~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqd  229 (432)
T COG5231         152 EYLGKLSQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQD  229 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHH
Confidence            344455556677788899999999987 44555555443 4456677777764  47899999999999888 6666633


Q ss_pred             hhh-CCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCh--hhHHHHHhhchHHHHHhh-cCC--ChhHHHHHHHHHHHH
Q psy12594        205 ASD-CDVIPLLIKALNND-EVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHL-TYP--HGLVQKNAATLLRDM  277 (542)
Q Consensus       205 ~~~-~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~L~~lL-~~~--~~~v~~~a~~~L~~L  277 (542)
                      +-. -..+.-++++.+.. ...+.+.++..+.|++...+  ..........+.+-+..| ...  |++++...-..=..|
T Consensus       230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l  309 (432)
T COG5231         230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL  309 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            221 23455666666644 56788999999999998543  233344445566644444 333  777766544433333


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh--hCchHHHHHhhcCCChhhHHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE--LQGVGSLQTILQCPHKEQLQVAA  355 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~v~~~a  355 (542)
                      ........-  .+ ..+..|-.-+-+-+|..+....|.         .....+.+  ..++..|..+++...+......|
T Consensus       310 ~~~~k~l~~--fD-~Y~~ELdsg~l~wSp~H~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vA  377 (432)
T COG5231         310 VQNTKKLCI--FD-NYLNELDSGRLEWSPYHHKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVA  377 (432)
T ss_pred             HhhhhhhhH--HH-HHHHHHhhCcccCCCcccccCchh---------hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeee
Confidence            322211110  00 001111111111222222222210         11222222  24778889999886554455678


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       356 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      |.-++.+....|+....+.+.|+-..+++++.+++  ++||.+|..|+..++.
T Consensus       378 c~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d--~~VkfeAl~a~q~~i~  428 (432)
T COG5231         378 CSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDD--DDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCC--chhhHHHHHHHHHHHh
Confidence            99999999999999888889999999999999884  5999999999877653

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.02  E-value=1.4e-05  Score=61.16  Aligned_cols=86  Identities=24%  Similarity=0.378  Sum_probs=71.4

Q ss_pred             hHHHHhhh-cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         43 VDLIVPLL-ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        43 i~~L~~lL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      ||.|++.+ +++++.+|..|+.+|+.+.            ....++.|+++++++++.+|..++.+|+.+..        
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence            57888888 8889999999999999776            33468999999999999999999999998742        


Q ss_pred             hhcCChHHHHhhhcCCC-HHHHHHHHHHHH
Q psy12594        122 IEDKDLDSIISSLHDFD-PDTRANAALALG  150 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~  150 (542)
                        ..+++.|.+++.+++ ..+|..|+.+|+
T Consensus        61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 --PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              247899999998764 667898888774

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.98  E-value=0.00011  Score=67.74  Aligned_cols=189  Identities=22%  Similarity=0.236  Sum_probs=118.4

Q ss_pred             ccCCHHHHHHHHHHHHHHhcCC--hhhhh-Hhh--cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy12594         94 TKQNKHYKKTALHMLTCVAQQD--ERCAG-LIE--DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGA  168 (542)
Q Consensus        94 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~-~~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~  168 (542)
                      .+.+...|..++.-|..+..+.  ..... +..  ...+..+...+.+....+...|+.++..++..-....+.. -..+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            4577899999999999987655  22222 221  1566777778877778888999999998884322222222 2235


Q ss_pred             hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy12594        169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA  248 (542)
Q Consensus       169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  248 (542)
                      +|.|++.+.++...++..|..+|..++...+ ....+.    .+.+...+.+.++.+|..++..+..+....+.....+.
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            8999999999999999999999999998644 111110    36677778889999999999999998776541111111


Q ss_pred             ----hhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594        249 ----DGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV  288 (542)
Q Consensus       249 ----~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  288 (542)
                          -..+.+ +..++.+.++++|..|-.++..+..+.++....+
T Consensus       171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~  215 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESI  215 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred             ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccc
Confidence                135777 8999999999999999999999987777666544

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0567|consensus

Probab=97.98  E-value=0.00068  Score=60.71  Aligned_cols=88  Identities=15%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchh
Q psy12594        336 VGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKE  415 (542)
Q Consensus       336 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~  415 (542)
                      +..|.+-+..+ ..-.|..+++++|.+  .++.         .++.|...|.+...++-||.+|+.||+.+... +.++.
T Consensus       189 I~al~~~l~~~-SalfrhEvAfVfGQl--~s~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-~~~~v  255 (289)
T KOG0567|consen  189 INALIDGLADD-SALFRHEVAFVFGQL--QSPA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE-DCVEV  255 (289)
T ss_pred             HHHHHHhcccc-hHHHHHHHHHHHhhc--cchh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-HHHHH
Confidence            34445555554 357899999999999  3343         56888888887776778999999999988643 44777


Q ss_pred             hHHhhcCCCCHHHHHHHHHHHH
Q psy12594        416 LEQMLLGNVSEELLASILCAFA  437 (542)
Q Consensus       416 L~~lL~~~~~~~v~~~~l~~l~  437 (542)
                      |...+. +.++-|...+--+|.
T Consensus       256 L~e~~~-D~~~vv~esc~vald  276 (289)
T KOG0567|consen  256 LKEYLG-DEERVVRESCEVALD  276 (289)
T ss_pred             HHHHcC-CcHHHHHHHHHHHHH
Confidence            777776 444444444444443

>KOG4535|consensus

Probab=97.98  E-value=0.003  Score=61.33  Aligned_cols=434  Identities=10%  Similarity=0.073  Sum_probs=224.1

Q ss_pred             cCCChHHHHHHHHHHHHhHccCChHHHHH------HH---hcCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         51 ADKVPSIQHAALATLGKLMCAKHVDIRQE------VL---ERNLVALVLKD-LTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~------i~---~~~~l~~Lv~~-L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      ++....+|..|+.++..+.  +.-+-+..      ++   ..++-|.|+-+ |++.++..|..|+.++..+..++.....
T Consensus         6 r~~~akvr~~al~~~~~~~--~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls   83 (728)
T KOG4535|consen    6 RSYQAKVRQGALVCFLSTI--KSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLS   83 (728)
T ss_pred             hhHHHHHHhhHHHHHHHHH--hhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHH
Confidence            3445678888888888777  43111111      11   34566666544 7788999999999998888766543322


Q ss_pred             -Hhh---cCCh--------------HHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhccCCC
Q psy12594        121 -LIE---DKDL--------------DSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIV-QCGALPPLVQILASPQ  180 (542)
Q Consensus       121 -~~~---~g~v--------------~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~  180 (542)
                       -.+   +..-              ..|+-.|. ...+.+....++||+++....|..+-.+. -..++..+-.++++.+
T Consensus        84 ~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d  163 (728)
T KOG4535|consen   84 VAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD  163 (728)
T ss_pred             HHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence             111   1211              22233333 34567778899999999986665443331 1234556667788889


Q ss_pred             HhHHHHHHHHHHHHhcCC---HHHHHHhhhC-----------CCh---------HHHHHh--------------------
Q psy12594        181 LSLKHAAAFALDGIVKHS---PELAESASDC-----------DVI---------PLLIKA--------------------  217 (542)
Q Consensus       181 ~~~~~~a~~~L~nl~~~~---~~~~~~~~~~-----------~~i---------~~L~~l--------------------  217 (542)
                      +.++..++..++.|....   |+....+-..           ..-         +.+.+.                    
T Consensus       164 ~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~  243 (728)
T KOG4535|consen  164 VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCIS  243 (728)
T ss_pred             CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeee
Confidence            999999998888876532   2222111000           000         000000                    


Q ss_pred             ------------------hcC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        218 ------------------LNN--DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       218 ------------------l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                                        +..  ....+|-.+...|.-++.+-.-.+  .....+.. +...+...++.++..+..++..
T Consensus       244 i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~--~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~  321 (728)
T KOG4535|consen  244 IVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQ--AYLMELGRVICKCMGEADPSIQLHGAKLLEE  321 (728)
T ss_pred             eeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHccCCCCChHHHHHHHHHHHH
Confidence                              000  012355555555655554422111  11112333 4444555688999999888887


Q ss_pred             Hhc-----CChHHHHHHHhcCCHHHHHH------h-hhcCCccchHHHHHHHhHhhcCCh------HHHHHHHhhCchHH
Q psy12594        277 MCK-----HNLRLANLVVLAGGLDGLLR------L-IDCNGGYNSLPAIMALGYMSAQSE------QIAEQIIELQGVGS  338 (542)
Q Consensus       277 L~~-----~~~~~~~~~~~~~~i~~Lv~------l-L~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~l~~  338 (542)
                      +..     ..|+-.+.-...+.+-.+..      . -.+..+..+..++-++.++....-      ..+..       +.
T Consensus       322 lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~-------~~  394 (728)
T KOG4535|consen  322 LGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLC-------IT  394 (728)
T ss_pred             HHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhh-------HH
Confidence            642     22332222222222221111      1 122334466677777777754211      11111       11


Q ss_pred             HHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC--------
Q psy12594        339 LQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC--------  410 (542)
Q Consensus       339 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~--------  410 (542)
                      +..-..++.+.-++.+|.++++=+..+..-......-.+....+...+.+.  ...+|.+++|+++|+....        
T Consensus       395 Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~--~ln~r~KaawtlgnITdAL~~~~Ps~~  472 (728)
T KOG4535|consen  395 FLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK--SLNVRAKAAWSLGNITDALIVNMPTPD  472 (728)
T ss_pred             HHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH--hHhHHHHHHHHhhhhHHHHHcCCCCch
Confidence            111111223345777888888877666544444444455666666777665  4689999999999995321        


Q ss_pred             ----CC----chhhHHhhcC-CCCH-HHHHHHHHHHHhhCCCChhhh----hHHHHhcchHHhhhcC--CCCcHH-HHHH
Q psy12594        411 ----EN----PKELEQMLLG-NVSE-ELLASILCAFAKILPCDPVAR----RSFVTSHCLRKVQEIE--PTPEIA-PHLK  473 (542)
Q Consensus       411 ----~~----i~~L~~lL~~-~~~~-~v~~~~l~~l~~ll~~~~~~~----~~~~~~g~~~~l~~l~--~~~~~~-~a~~  473 (542)
                          .+    +..+.++-.. +.|. +|...+..+|.|+++.-....    ..+.+...++.+....  .+-.++ .+..
T Consensus       473 s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCy  552 (728)
T KOG4535|consen  473 SFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACY  552 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHH
Confidence                11    1122221111 2333 577778888877755322111    1111211111122222  333443 6889


Q ss_pred             HHhccCccchhcccCccchHHHHH
Q psy12594        474 TINACFPNEVIHFVSPHYLEDLIN  497 (542)
Q Consensus       474 ~l~~~~~~~~~~~~~~~~~~~~l~  497 (542)
                      .|.++|.++-...-.......++.
T Consensus       553 a~gNLfkn~a~~lq~~~wA~~~F~  576 (728)
T KOG4535|consen  553 AMGNLFKNPALPLQTAPWASQAFN  576 (728)
T ss_pred             HHHHhhcCccccccCCCchHHHHH
Confidence            999999877664443333444333

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.96  E-value=2.5e-05  Score=59.79  Aligned_cols=85  Identities=28%  Similarity=0.388  Sum_probs=68.7

Q ss_pred             hHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594        169 LPPLVQIL-ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI  247 (542)
Q Consensus       169 i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  247 (542)
                      |+.|++.+ +++++.+|..++++|+++..           ...++.|..+++++++.+|..++++|+.+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57889988 78889999999999996643           234799999999999999999999999873          


Q ss_pred             HhhchHH-HHHhhcCC-ChhHHHHHHHHHH
Q psy12594        248 ADGATTL-AVEHLTYP-HGLVQKNAATLLR  275 (542)
Q Consensus       248 ~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~  275 (542)
                       ....++ |..++.++ +..++..|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             125678 99989887 5667888888774

>KOG1240|consensus

Probab=97.94  E-value=0.00049  Score=73.68  Aligned_cols=297  Identities=15%  Similarity=0.064  Sum_probs=178.5

Q ss_pred             HHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc---CChHHHH
Q psy12594         86 VALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAK---DNKHFAE  161 (542)
Q Consensus        86 l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~---~~~~~~~  161 (542)
                      ++.+..++++ ...+.+..|+..|..++....+-.+  -.-++|.++.+++++...||..|+.+|..+..   +-+..-.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da  501 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA  501 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence            3444455554 4567888899999888754322111  12478999999999999999999999888762   2222122


Q ss_pred             HHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594        162 RIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  240 (542)
                      .+...=++|.|-.++.+ ....+|..-+.+|..|+..    ...+.+.+.-.....++.+++.+       .....- .+
T Consensus       502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t----A~rFle~~q~~~~~g~~n~~nse-------t~~~~~-~~  569 (1431)
T KOG1240|consen  502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT----AYRFLELTQELRQAGMLNDPNSE-------TAPEQN-YN  569 (1431)
T ss_pred             hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH----HHHHHHHHHHHHhcccccCcccc-------cccccc-cc
Confidence            23333457888888888 4567777777788888762    11221111111112223333332       000000 00


Q ss_pred             hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594        241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM  319 (542)
Q Consensus       241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l  319 (542)
                      .+..+  ....+-. ...+|.++++-|++.....+.-||.---..   =.+.-.++.|+.+|++.++.+|.+=...|..+
T Consensus       570 ~~~~~--L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gv  644 (1431)
T KOG1240|consen  570 TELQA--LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGV  644 (1431)
T ss_pred             hHHHH--HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccce
Confidence            11111  1123444 677888888899998888888887421000   00123578999999999888776655555544


Q ss_pred             hcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHH
Q psy12594        320 SAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKC  399 (542)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a  399 (542)
                      +..-..   .-.+...+|.|.+-|.++. +.|...|+.++..|+...--.+..+.+  +++...-+|-++  +.=+|..+
T Consensus       645 si~VG~---rs~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hP--N~WIR~~~  716 (1431)
T KOG1240|consen  645 SIFVGW---RSVSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHP--NLWIRRAV  716 (1431)
T ss_pred             EEEEee---eeHHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCc--hHHHHHHH
Confidence            332111   1123467888888888854 588889999999887654322333322  556666777777  45799999


Q ss_pred             HHHHHHHHhh
Q psy12594        400 KNALNILIPK  409 (542)
Q Consensus       400 ~~aL~nl~~~  409 (542)
                      +..|....++
T Consensus       717 ~~iI~~~~~~  726 (1431)
T KOG1240|consen  717 LGIIAAIARQ  726 (1431)
T ss_pred             HHHHHHHHhh
Confidence            8888877543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.0037  Score=62.04  Aligned_cols=129  Identities=16%  Similarity=0.117  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC----HHHHHHHHHHHHHHhcCChhhhhHhhcCChHHH
Q psy12594         55 PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN----KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI  130 (542)
Q Consensus        55 ~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L  130 (542)
                      +.-|-.|+..|..+-  .++..        ....+++.+....    ......-.++...+...++....    ...|.|
T Consensus       204 ~isqYHalGlLyq~k--r~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~----q~rpfL  269 (898)
T COG5240         204 PISQYHALGLLYQSK--RTDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALL----QLRPFL  269 (898)
T ss_pred             hHHHHHHHHHHHHHh--cccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHH----HHHHHH
Confidence            455666777776666  33222        2223444444322    22222233334444433333322    234666


Q ss_pred             HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594        131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE  200 (542)
Q Consensus       131 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~  200 (542)
                      -..+++.-..+..++++++..++..+  ....+++. .+..|-.+|+++....|-.|+++|..|+...|+
T Consensus       270 ~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~  336 (898)
T COG5240         270 NSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ  336 (898)
T ss_pred             HHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence            66776666788888888888887543  11222222 267778888888899999999999999875553

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.92  E-value=6.1e-05  Score=69.46  Aligned_cols=187  Identities=18%  Similarity=0.171  Sum_probs=119.1

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHc--CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCC
Q psy12594        135 HDFDPDTRANAALALGGLAKDN--KHFAERIVQC--GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDV  210 (542)
Q Consensus       135 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~  210 (542)
                      .+.+.+.|..++..|..+...+  ......+.+.  .++..+...+.+....+...|+.++..++........... ...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence            4567888999999999988655  2223333222  5566777778777788999999999999875433333333 456


Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhch-HH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594        211 IPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGAT-TL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV  288 (542)
Q Consensus       211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  288 (542)
                      +|.|++.+.++...++..|..+|..++...+ ...     .+ .+ +...+.+.++.+|..++..+..+....+.....+
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-YSP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS--H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            7999999999999999999999999998764 111     23 55 7777888899999999999998876555111111


Q ss_pred             H----hcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHH
Q psy12594        289 V----LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAE  328 (542)
Q Consensus       289 ~----~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  328 (542)
                      .    -....+.+..++.+.++++|..|-.++..+....++...
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            1    134677889999999999999999999988655444443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.84  E-value=0.0015  Score=60.01  Aligned_cols=287  Identities=12%  Similarity=0.060  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCch---HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHH-HhcCcHHHHHH
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVV---DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEV-LERNLVALVLK   91 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i---~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i-~~~~~l~~Lv~   91 (542)
                      .|..|...+..+..+..   ..++.|..   ..|-+++++-++-.+.-|+.++.++.  ..++.+... .+...-..++.
T Consensus       124 ~k~~f~~vf~~~~~~~~---~~v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~--~~~e~R~i~waentcs~r~~e  198 (432)
T COG5231         124 HKKEFLSVFKQMLKDNT---SYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLE--FDVEKRKIEWAENTCSRRFME  198 (432)
T ss_pred             HHHHHHHHHHHHccCch---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhhHHHHHHH
Confidence            45566776666665321   22233322   33445666667888999999999999  776666544 34456677888


Q ss_pred             hhcc--CCHHHHHHHHHHHHHHhcCChhhhh-Hhh-cCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCC-hHHHHHHHH
Q psy12594         92 DLTK--QNKHYKKTALHMLTCVAQQDERCAG-LIE-DKDLDSIISSLHDFD-PDTRANAALALGGLAKDN-KHFAERIVQ  165 (542)
Q Consensus        92 ~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~-~~~-~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~-~~~~~~i~~  165 (542)
                      .++.  ...++|...+.++.-+.... ...+ +-+ ...+.-++++.+... ..+-..++..+.|++... ......+.-
T Consensus       199 ~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll  277 (432)
T COG5231         199 ILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL  277 (432)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh
Confidence            8875  55788999998888877443 3333 221 245666777776543 566677888888888633 233444444


Q ss_pred             cCChHHHHHhccCC---CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594        166 CGALPPLVQILASP---QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS  242 (542)
Q Consensus       166 ~g~i~~L~~ll~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  242 (542)
                      .|-+..-++.|...   +.+++...-.+=..+.....+...  .+.-.-+.-..++. .+|.-+..-.|.         .
T Consensus       278 l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~--fD~Y~~ELdsg~l~-wSp~H~~~dFWs---------~  345 (432)
T COG5231         278 LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI--FDNYLNELDSGRLE-WSPYHHKKDFWS---------T  345 (432)
T ss_pred             hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHhhCccc-CCCcccccCchh---------h
Confidence            44455555655442   455555433332222221111110  00000011111111 122222222221         1


Q ss_pred             hHHHHHh--hchHH-HHHhhcCCChh-HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594        243 LASTIAD--GATTL-AVEHLTYPHGL-VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY  318 (542)
Q Consensus       243 ~~~~~~~--~~~i~-L~~lL~~~~~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~  318 (542)
                      +.+.+.+  ..++. |.++++...+. ....||.-+..+.+..|+....+.++|+=+.+..++.+++++++..|+.++..
T Consensus       346 N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~  425 (432)
T COG5231         346 NLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQT  425 (432)
T ss_pred             hHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHH
Confidence            2222222  46778 99999988554 66678888999999999999989999999999999999999999999988876


Q ss_pred             hh
Q psy12594        319 MS  320 (542)
Q Consensus       319 l~  320 (542)
                      +.
T Consensus       426 ~i  427 (432)
T COG5231         426 CI  427 (432)
T ss_pred             HH
Confidence            54

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.043  Score=54.81  Aligned_cols=209  Identities=15%  Similarity=0.133  Sum_probs=125.7

Q ss_pred             HHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHH
Q psy12594        189 FALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQ  267 (542)
Q Consensus       189 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~  267 (542)
                      ++...+...+++...++.     |.|-.++++.-.-+.-.+++++..++..+  .....+. ..+. |-.+|+++....|
T Consensus       249 r~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~r  320 (898)
T COG5240         249 RATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLR  320 (898)
T ss_pred             HHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHH
Confidence            334444445565555554     77888888776778888888888887654  1222222 4566 8888999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC
Q psy12594        268 KNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH  347 (542)
Q Consensus       268 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~  347 (542)
                      ..|..+|..|+...|+...     -+=+.+-.++.+.+..+...|+..|.  -.++++....+++  .++.++.=+.++-
T Consensus       321 FsA~Riln~lam~~P~kv~-----vcN~evEsLIsd~Nr~IstyAITtLL--KTGt~e~idrLv~--~I~sfvhD~SD~F  391 (898)
T COG5240         321 FSAMRILNQLAMKYPQKVS-----VCNKEVESLISDENRTISTYAITTLL--KTGTEETIDRLVN--LIPSFVHDMSDGF  391 (898)
T ss_pred             HHHHHHHHHHHhhCCceee-----ecChhHHHHhhcccccchHHHHHHHH--HcCchhhHHHHHH--HHHHHHHhhccCc
Confidence            9999999999987765432     11133456667777777777777663  3566665555543  2333333232221


Q ss_pred             hhhHHHHHHHHHHHhhcCChHHHHH--------HHHcCC-------hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy12594        348 KEQLQVAAAWTLGQIGKHSVDNVTA--------LCEENV-------LSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN  412 (542)
Q Consensus       348 ~~~v~~~a~~~L~~l~~~~~~~~~~--------l~~~~~-------l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~  412 (542)
                       .-+...|.+.|++.   .|.-...        +.+.|+       +..+.+.+..   .++-|+.|...||.++++|++
T Consensus       392 -KiI~ida~rsLsl~---Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~---~p~skEraLe~LC~fIEDcey  464 (898)
T COG5240         392 -KIIAIDALRSLSLL---FPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN---DPDSKERALEVLCTFIEDCEY  464 (898)
T ss_pred             -eEEeHHHHHHHHhh---CcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHhhcch
Confidence             13444455555544   3322221        223333       3444555543   247777788888888888877


Q ss_pred             chhhHHhhc
Q psy12594        413 PKELEQMLL  421 (542)
Q Consensus       413 i~~L~~lL~  421 (542)
                      -+..+++|.
T Consensus       465 ~~I~vrIL~  473 (898)
T COG5240         465 HQITVRILG  473 (898)
T ss_pred             hHHHHHHHH
Confidence            766666654

>KOG1058|consensus

Probab=97.81  E-value=0.004  Score=63.73  Aligned_cols=323  Identities=12%  Similarity=0.083  Sum_probs=167.6

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-------hhh
Q psy12594         46 IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD-------ERC  118 (542)
Q Consensus        46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-------~~~  118 (542)
                      +.+=|+++++-+|...++.|++|-  + ++..     ...+|.+.++|.+.++-+|+.|..++..+-...       ++.
T Consensus       104 ~RkDLQHPNEyiRG~TLRFLckLk--E-~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeL  175 (948)
T KOG1058|consen  104 YRKDLQHPNEYIRGSTLRFLCKLK--E-PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPEL  175 (948)
T ss_pred             HhhhccCchHhhcchhhhhhhhcC--c-HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHH
Confidence            445567888888988888888875  3 3332     236788888999999999998888777654331       111


Q ss_pred             hh-Hhh--cC--C-hHHHHhhh------------------cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q psy12594        119 AG-LIE--DK--D-LDSIISSL------------------HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ  174 (542)
Q Consensus       119 ~~-~~~--~g--~-v~~Lv~lL------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  174 (542)
                      .. +..  .+  . -..++-++                  .+.++.++...+..+...+..+|..+..     .+..+..
T Consensus       176 i~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~  250 (948)
T KOG1058|consen  176 IESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYN  250 (948)
T ss_pred             HHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHH
Confidence            11 110  00  0 00111111                  1112223333333333333323332222     2455666


Q ss_pred             hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchH
Q psy12594        175 ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATT  253 (542)
Q Consensus       175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  253 (542)
                      +|.+.++.++..|+.+|.+++. +|.......     ..++.++. .++..+.--...-|..+...+    +.+.+ +.+
T Consensus       251 lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa-----~~~i~l~~kesdnnvklIvldrl~~l~~~~----~~il~-~l~  319 (948)
T KOG1058|consen  251 LLSSTSSAVIFEAAGTLVTLSN-DPTALKAAA-----STYIDLLVKESDNNVKLIVLDRLSELKALH----EKILQ-GLI  319 (948)
T ss_pred             HHhcCCchhhhhhcceEEEccC-CHHHHHHHH-----HHHHHHHHhccCcchhhhhHHHHHHHhhhh----HHHHH-HHH
Confidence            7777777777777777777766 443333222     34444443 223333333333344443221    12222 444


Q ss_pred             H-HHHhhcCCChhHHHHHHHHHHHHhcCC--hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH
Q psy12594        254 L-AVEHLTYPHGLVQKNAATLLRDMCKHN--LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI  330 (542)
Q Consensus       254 ~-L~~lL~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  330 (542)
                      - ++..|..+|-+++..++.....|+.+.  .+... +....+...--. =+..+.+.|..-+++++..+..-++...  
T Consensus       320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~-~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~aa--  395 (948)
T KOG1058|consen  320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQ-FLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEVAA--  395 (948)
T ss_pred             HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHH-HHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHHHH--
Confidence            4 889999999999999999888886432  12211 111010000000 0111223466667788777666555443  


Q ss_pred             HhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594        331 IELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL  406 (542)
Q Consensus       331 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl  406 (542)
                         .+++.|++.+.+.++ ..-...+..+.......|..+..++     ..|+..+..-. +..+.+.|.|.++..
T Consensus       396 ---tvV~~ll~fisD~N~-~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~ir-S~ki~rgalwi~GeY  461 (948)
T KOG1058|consen  396 ---TVVSLLLDFISDSNE-AAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQIR-SSKICRGALWILGEY  461 (948)
T ss_pred             ---HHHHHHHHHhccCCH-HHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhhhc-ccccchhHHHHHHHH
Confidence               577888999988553 4444444444444445555444443     33333333211 225677778877765

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.79  E-value=0.0036  Score=63.40  Aligned_cols=261  Identities=13%  Similarity=0.059  Sum_probs=167.0

Q ss_pred             HHHHHHhHccCChHHHHHHHhcCcHHHHHHhh----------ccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHH
Q psy12594         62 LATLGKLMCAKHVDIRQEVLERNLVALVLKDL----------TKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSI  130 (542)
Q Consensus        62 ~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L----------~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~L  130 (542)
                      +.+|+-++  .++...+.+....++..|.+.-          ...++.+..+|+.+|+|+...++..+. +.+.|..+.+
T Consensus         2 L~~LRiLs--Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRILS--RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHHc--cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            34455555  5544555555555555555544          246789999999999999999989888 8899999999


Q ss_pred             HhhhcCC-----CHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccC-----------------CCHhHHHHH
Q psy12594        131 ISSLHDF-----DPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILAS-----------------PQLSLKHAA  187 (542)
Q Consensus       131 v~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~-----------------~~~~~~~~a  187 (542)
                      ++.|+..     +.++.....+.|.-++...+..+..+++. +++..++..+..                 .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999876     67888888888888877777777777666 667766665521                 124456678


Q ss_pred             HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCChhh-----------HHHH
Q psy12594        188 AFALDGIVKHSPELAESASDCDVIPLLIKALN---------NDEVNVKADAFLCLADIAKDSPSL-----------ASTI  247 (542)
Q Consensus       188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~-----------~~~~  247 (542)
                      +..+-|+..+.+..... .+...++.++.++.         .+......+++.+|.|+--.....           ....
T Consensus       160 LKllFNit~~~~~~~~~-~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~  238 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPE-EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG  238 (446)
T ss_pred             HHHHHHhhhccCcccch-hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence            88889998765543321 11233343333322         123457788888888873211111           0001


Q ss_pred             HhhchHH-HHHhhcCC--------ChhHHHHHHHHHHHHhcCChHHHHHHHh----------------cCCHHHHHHhhh
Q psy12594        248 ADGATTL-AVEHLTYP--------HGLVQKNAATLLRDMCKHNLRLANLVVL----------------AGGLDGLLRLID  302 (542)
Q Consensus       248 ~~~~~i~-L~~lL~~~--------~~~v~~~a~~~L~~L~~~~~~~~~~~~~----------------~~~i~~Lv~lL~  302 (542)
                      .....+. |+.+|...        -.+.....+.+|..++.......+.+..                ...-.+|++++.
T Consensus       239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt  318 (446)
T PF10165_consen  239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT  318 (446)
T ss_pred             CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence            1233445 66665432        1356667778888888776544443332                123457888888


Q ss_pred             cCCccchHHHHHHHhHhhcCChH
Q psy12594        303 CNGGYNSLPAIMALGYMSAQSEQ  325 (542)
Q Consensus       303 ~~~~~~~~~a~~~L~~l~~~~~~  325 (542)
                      ++.+.++..+...+..||..+..
T Consensus       319 ~~~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  319 SPDPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             CCCchHHHHHHHHHHHHHhhhHH
Confidence            88877888888888888765543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.77  E-value=5.8e-05  Score=51.76  Aligned_cols=55  Identities=22%  Similarity=0.414  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594        349 EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL  406 (542)
Q Consensus       349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl  406 (542)
                      +.+|..|+++|++++...++..+. ....+++.|+.+|.++  +++||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence            368999999999998777776665 4446999999999876  469999999999986

...

>KOG1078|consensus

Probab=97.75  E-value=0.028  Score=58.19  Aligned_cols=69  Identities=25%  Similarity=0.251  Sum_probs=49.9

Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP  199 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~  199 (542)
                      ..+.+-.++.+....+...|+.++.++...++..   +.  ..+..|--++.++...+|..|.++|..++...|
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P  314 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP  314 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence            4556666777777888888888888887544331   11  146777778888889999999999988887444

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.74  E-value=4.9e-05  Score=52.13  Aligned_cols=55  Identities=31%  Similarity=0.487  Sum_probs=47.6

Q ss_pred             HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594        181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADI  236 (542)
Q Consensus       181 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  236 (542)
                      +.+|..|+++|++++...++...... ..+++.|..++.++++++|..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999987776666644 77889999999999999999999999875

...

>PRK14707 hypothetical protein; Provisional

Probab=97.67  E-value=0.2  Score=57.83  Aligned_cols=422  Identities=16%  Similarity=0.111  Sum_probs=221.1

Q ss_pred             HHHHHHhcCCCCchHHHHhCCchHHHHhhhcC--CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CC
Q psy12594         21 VQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD--KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QN   97 (542)
Q Consensus        21 ~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~   97 (542)
                      ......++.+...+..+ +..+|..+++-+..  +++..+..+...-..++  .++..+..+ +...+-..+..|+. ++
T Consensus       186 ~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~--~~~~l~~~~-~~q~va~~lN~lsKwp~  261 (2710)
T PRK14707        186 PRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLA--DESRLRNEL-KPQELGNALNALSKWAD  261 (2710)
T ss_pred             HHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHc--CcHHHHHhC-ChHHHHHHHHHHhcCCC
Confidence            33334444444444333 34444544544432  33444444444444444  334443333 34445555665654 45


Q ss_pred             HHHHHHHHHHHHH-HhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q psy12594         98 KHYKKTALHMLTC-VAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI  175 (542)
Q Consensus        98 ~~~~~~a~~~L~~-l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  175 (542)
                      ...-..++..+.. ++. .+..++ +-..++-..|-.+-+-++..+...|+..|..=..++++.++.+-..++-..|-.+
T Consensus       262 ~~~C~~a~~~lA~rl~~-~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNal  340 (2710)
T PRK14707        262 TPVCAAAASALAERLVD-DPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNAL  340 (2710)
T ss_pred             chHHHHHHHHHHHHHhh-hHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHh
Confidence            4455555555444 543 334444 3322232333333344566677777766665555577776666555533333333


Q ss_pred             ccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchH
Q psy12594        176 LASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATT  253 (542)
Q Consensus       176 l~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  253 (542)
                      -+=++ ...+..+...-..++. +++.+..+-. .++...++-++ =++....+.++..|..=..++++.++.+...++-
T Consensus       341 sKWpd~~~C~~Aa~~LA~rl~~-d~~l~~~l~~-q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~va  418 (2710)
T PRK14707        341 SKWPDNPVCAAAVSALAERLVA-DPELRKDLEP-QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVS  418 (2710)
T ss_pred             hcCCCchhHHHHHHHHHHHhcc-CHhhhcccch-hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHH
Confidence            34355 4455555544555555 6777766653 34444444444 3455555555555554444556677777766666


Q ss_pred             HHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594        254 LAVEHLTY-PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMALGYMSAQSEQIAEQII  331 (542)
Q Consensus       254 ~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  331 (542)
                      .+++-|+. ++..+...++..|..-..++++..+.+--.+ +...+..++ =++..+-..+...|..-...+.+..+.+-
T Consensus       419 n~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~  497 (2710)
T PRK14707        419 NALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALK  497 (2710)
T ss_pred             HHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcC
Confidence            65555554 5888888888888877777777766543223 333343333 35555666666666555455566666554


Q ss_pred             hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-
Q psy12594        332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-  410 (542)
Q Consensus       332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-  410 (542)
                      -.++...|-.+-+-+......+.+.|..+.+..  +......+...-+..+++-+... +..+.++.++..|..+.... 
T Consensus       498 ~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKw-p~s~~C~~A~~~iA~~l~~~~  574 (2710)
T PRK14707        498 PQEVVIALHSLSKWPDTPICAEAASALAERVVD--ELQLRKAFDAHQVVNTLKALSKW-PDKQLCAVAASGLAERLADEP  574 (2710)
T ss_pred             HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcC-CchhHHHHHHHHHHHHhhcch
Confidence            445555555555554446677778888888842  22233333322334444444432 24467777777777664321 


Q ss_pred             --------CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHh
Q psy12594        411 --------ENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTS  453 (542)
Q Consensus       411 --------~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~  453 (542)
                              ..+..+...|+.-.+......+...|...+...+..+..+...
T Consensus       575 ~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~q  625 (2710)
T PRK14707        575 QLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKELDPV  625 (2710)
T ss_pred             hhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhccHH
Confidence                    1134444444323344556666666665555555444444333

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.63  E-value=0.084  Score=53.34  Aligned_cols=341  Identities=13%  Similarity=0.099  Sum_probs=190.0

Q ss_pred             hHHHHhhhcCCCh---HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhh
Q psy12594         43 VDLIVPLLADKVP---SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        43 i~~L~~lL~s~~~---~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      +|.+...|.++++   ......+.+|..++  ..+...+.+.. ..+..+-..... .+.......+..+.++.......
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls--~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALS--TSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHH--CChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            3667777766654   56777889999999  76555444333 334344333332 35667777777887775433222


Q ss_pred             h-----h-HhhcCChHHHHhhhcCC-------CHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhcc-------
Q psy12594        119 A-----G-LIEDKDLDSIISSLHDF-------DPDTRANAALALGGLAKDN-KHFAERIVQCGALPPLVQILA-------  177 (542)
Q Consensus       119 ~-----~-~~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~-------  177 (542)
                      .     . ..+..+++.+.++.-..       ++.+...+...+..+...- ++.++.+     +..+..++.       
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~  152 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSP  152 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCC
Confidence            2     1 33445788877776321       2455555666666555433 3333333     223333332       


Q ss_pred             ---CC------CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594        178 ---SP------QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTI  247 (542)
Q Consensus       178 ---~~------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~  247 (542)
                         ..      ..........+++.+-..   ..-. .....+..++.+.. ..++..+..++.+++-+...-++..   
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~---~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---  225 (415)
T PF12460_consen  153 FQPSSSTISEQQSRLVILFSAILCSLRKD---VSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---  225 (415)
T ss_pred             CCccccccccccccHHHHHHHHHHcCCcc---cCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---
Confidence               01      111222222333333321   1100 11124556666655 4468889999999998887632111   


Q ss_pred             HhhchHH-HHHhh-cCCChhHHH----HHHHHHHHHhcC-ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        248 ADGATTL-AVEHL-TYPHGLVQK----NAATLLRDMCKH-NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       248 ~~~~~i~-L~~lL-~~~~~~v~~----~a~~~L~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                      .-..++. +...+ ...+...+.    ..+|+...+... ++...      ..++.|++++.+  +.+...+.+.++-+.
T Consensus       226 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--~~~g~~aA~~f~il~  297 (415)
T PF12460_consen  226 DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--PELGQQAAKAFGILL  297 (415)
T ss_pred             hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--hhhHHHHHHHHhhHh
Confidence            1113344 44444 222334444    444554444332 33222      235577888877  567788888888887


Q ss_pred             cCChH--------HHHHHHhh----CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhc
Q psy12594        321 AQSEQ--------IAEQIIEL----QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQ  388 (542)
Q Consensus       321 ~~~~~--------~~~~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~  388 (542)
                      ...+.        ..+.+.+.    ..+|.|++-.+...+ ..+..-+.+|.++..+-|.....--=..++|.|++-|..
T Consensus       298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~  376 (415)
T PF12460_consen  298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL  376 (415)
T ss_pred             cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence            65232        22333333    467777777776543 588888999999988776433222224688999999977


Q ss_pred             CCCChHHHHHHHHHHHHHHhh
Q psy12594        389 TCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       389 ~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      +  +.+++..+..+|..++..
T Consensus       377 ~--~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  377 P--DADVLLSSLETLKMILEE  395 (415)
T ss_pred             C--CHHHHHHHHHHHHHHHHc
Confidence            6  457888888888887754

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0915|consensus

Probab=97.58  E-value=0.024  Score=62.89  Aligned_cols=172  Identities=19%  Similarity=0.178  Sum_probs=105.2

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ..||.|.++-.++++.+|..-..+...|.  .+ ....+.+ -..+++.|+.-|.+....+|+.++.+|..+..+.+.-.
T Consensus       998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li--~D~k~~vd~y-~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPDKKVQDAMTSIWNALI--TDSKKVVDEY-LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred             HhhHHHhhhccCCcHHHHHHHHHHHHHhc--cChHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence            35677777767888999988888888888  66 3333322 33577788888888889999999999999987753322


Q ss_pred             hHhh--cCChHHHHhhhcCCCHHHHHHH---HHHHHHhhc-----CChHHHHHHHHcCChHHHHH--hccCCCHhHHHHH
Q psy12594        120 GLIE--DKDLDSIISSLHDFDPDTRANA---ALALGGLAK-----DNKHFAERIVQCGALPPLVQ--ILASPQLSLKHAA  187 (542)
Q Consensus       120 ~~~~--~g~v~~Lv~lL~~~~~~~~~~a---~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~~--ll~~~~~~~~~~a  187 (542)
                      . .+  ...+..+.+.+.+-...+|+.|   +.+|+.++.     .++.-.+.+.+ .++|.|+.  .+ +.-+++|+.+
T Consensus      1075 ~-~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gim-s~v~evr~~s 1151 (1702)
T KOG0915|consen 1075 V-KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIM-SKVNEVRRFS 1151 (1702)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcc-cchHHHHHHH
Confidence            2 21  1466666777665556777664   445555541     11111112211 12343332  12 3348899999


Q ss_pred             HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc
Q psy12594        188 AFALDGIVKHSPELAESASDCDVIPLLIKALN  219 (542)
Q Consensus       188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~  219 (542)
                      +.++..|+.+.+....... ...+|.|+....
T Consensus      1152 i~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHF-PKLIPLLLNAYS 1182 (1702)
T ss_pred             HHHHHHHHHhchhhhcchh-hHHHHHHHHHcc
Confidence            9999999986654332222 344555555554

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.52  E-value=0.0051  Score=62.55  Aligned_cols=251  Identities=16%  Similarity=0.140  Sum_probs=137.2

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy12594         87 ALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC  166 (542)
Q Consensus        87 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~  166 (542)
                      ..++...+ .+...+..|+..+.....+-|+...    .++..++.+..++|..+|..|+..|-.+|.++++....+   
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv---   97 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV---   97 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence            34444444 5788999999999999888777665    467899999999999999999999999999887766665   


Q ss_pred             CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---CCCHHHHHHHHHHHHHHhc-CChh
Q psy12594        167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN---NDEVNVKADAFLCLADIAK-DSPS  242 (542)
Q Consensus       167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~-~~~~  242 (542)
                        +..|+++|.++++.-...+-.+|..+...++..        .+..+...+.   +.+..+|+.++..|..=.. -..+
T Consensus        98 --aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~  167 (556)
T PF05918_consen   98 --ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE  167 (556)
T ss_dssp             --HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred             --HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence              678999999998777777888888888766643        2333333333   4577899998877743322 1111


Q ss_pred             hHH--HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc----CChHHHHHHHhcCCHHHHHHhh------hcCCccch
Q psy12594        243 LAS--TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK----HNLRLANLVVLAGGLDGLLRLI------DCNGGYNS  309 (542)
Q Consensus       243 ~~~--~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~----~~~~~~~~~~~~~~i~~Lv~lL------~~~~~~~~  309 (542)
                      ...  .-.+.-++. +-..|.+-..+=......+|..+-.    ..+...+.+++     .+.+..      ...++...
T Consensus       168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~I  242 (556)
T PF05918_consen  168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPESI  242 (556)
T ss_dssp             TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHHH
T ss_pred             HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHHH
Confidence            111  223334455 6666765444444455566666654    23444443322     222211      11222221


Q ss_pred             HHHH----HHHhHhhc--CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594        310 LPAI----MALGYMSA--QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS  366 (542)
Q Consensus       310 ~~a~----~~L~~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  366 (542)
                      ..-+    .++-..+.  .+......+++ .++|.+-.+     .+..+...+.++..++...
T Consensus       243 drli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~  299 (556)
T PF05918_consen  243 DRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL-----PEDRKLDLLKLLAELSPFC  299 (556)
T ss_dssp             HHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT----------HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC-----ChHHHHHHHHHHHHHcCCC
Confidence            1111    22222222  22233333333 577765555     2356777888888887553

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.49  E-value=0.14  Score=51.63  Aligned_cols=335  Identities=18%  Similarity=0.131  Sum_probs=187.7

Q ss_pred             HHHHHHhhccCCH---HHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChH---
Q psy12594         86 VALVLKDLTKQNK---HYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKH---  158 (542)
Q Consensus        86 l~~Lv~~L~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~---  158 (542)
                      +|.++..|.+.++   ......+.+|..+|...+-...+.. ..+..+-...+.. +.+.....+.+|..+......   
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            3567777776443   5677888899999866533333221 3444444444322 456666677777777632222   


Q ss_pred             --HHHHHHHcCChHHHHHhccCC-------CHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhc---------
Q psy12594        159 --FAERIVQCGALPPLVQILASP-------QLSLKHAAAFALDGIVKHS-PELAESASDCDVIPLLIKALN---------  219 (542)
Q Consensus       159 --~~~~i~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~---------  219 (542)
                        ......+..+++.+.+.....       +..+...+...+..+...- ++....+.     ..+..++.         
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCC
Confidence              123334445677777766332       1445555555555555533 22333332     22333222         


Q ss_pred             -C------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHh
Q psy12594        220 -N------DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVL  290 (542)
Q Consensus       220 -~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~  290 (542)
                       .      .......-...++..+-.+.. ..   .....+. ++.+..+. ++..+..++.+++.+.-.-+.... +  
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~-~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~-l--  227 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRKDVS-LP---DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD-L--  227 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCcccC-cc---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh-H--
Confidence             0      111222223333433332221 11   1123667 77776655 688899999999988855222211 1  


Q ss_pred             cCCHHHHHHhh-hcCCccchHHHHHHHhHhh-----cCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594        291 AGGLDGLLRLI-DCNGGYNSLPAIMALGYMS-----AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK  364 (542)
Q Consensus       291 ~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~-----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  364 (542)
                      ...++.+...+ ...++..+..++..+..++     ++++...      ..+..|+.++.+   +.+...++.+++-+..
T Consensus       228 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~---~~~g~~aA~~f~il~~  298 (415)
T PF12460_consen  228 DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS---PELGQQAAKAFGILLS  298 (415)
T ss_pred             HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence            12333344333 3334445555555444333     2333322      355667888877   3678888888888866


Q ss_pred             CChH--------HHHHHHHc----CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC----------CCchhhHHhhcC
Q psy12594        365 HSVD--------NVTALCEE----NVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC----------ENPKELEQMLLG  422 (542)
Q Consensus       365 ~~~~--------~~~~l~~~----~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~----------~~i~~L~~lL~~  422 (542)
                      ..++        ..+.+...    ..+|.|++..+..+  .+.|..-..||.+++...          ..+|.|.+-|. 
T Consensus       299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~--~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~-  375 (415)
T PF12460_consen  299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD--DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLS-  375 (415)
T ss_pred             CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC--hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC-
Confidence            5232        33444443    35677777777653  358888889999997653          23566777777 


Q ss_pred             CCCHHHHHHHHHHHHhhCCCChh
Q psy12594        423 NVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       423 ~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                      ..|.+++..++..+..++...++
T Consensus       376 ~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  376 LPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCHH
Confidence            78889999999999999887754

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.45  E-value=0.0011  Score=51.17  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHHHHHHHHhcCCHHHHHHhhh
Q psy12594        141 TRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAAFALDGIVKHSPELAESASD  207 (542)
Q Consensus       141 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~  207 (542)
                      .+...+..|++++..++..++.+.+.|++|.++....-  .+|-+++.|.+++.||+.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            35667889999999999999999999999999987643  46999999999999999999988877653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.44  E-value=0.00037  Score=44.29  Aligned_cols=39  Identities=31%  Similarity=0.507  Sum_probs=35.6

Q ss_pred             HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594        158 HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       158 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~  196 (542)
                      +.+..+.+.|+++.|++++++++++++..++|+|+||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            467888999999999999999899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.44  E-value=0.001  Score=51.27  Aligned_cols=67  Identities=15%  Similarity=0.286  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594        183 LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN--NDEVNVKADAFLCLADIAKDSPSLASTIAD  249 (542)
Q Consensus       183 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  249 (542)
                      ++...+.+|+|++..++.....+.+.+++|.++....  +.+|.+++.|++++.||+..+++.++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4667889999999999999999999999999998876  458999999999999999999888775543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1020|consensus

Probab=97.41  E-value=0.35  Score=54.17  Aligned_cols=107  Identities=17%  Similarity=0.259  Sum_probs=73.6

Q ss_pred             hhhHHHHHHHHHHH------------HHHHHHHHHHhcC-CCCchH-HHHhCCchHHHHhhhcCCChHHHHHHHHHHHHh
Q psy12594          3 RKSVKNSIDHYQRA------------RLCFVQTMSAFAD-KPSTIH-FLKDLNVVDLIVPLLADKVPSIQHAALATLGKL   68 (542)
Q Consensus         3 ~~~~~~~~~~~~~~------------r~~~~~~l~~l~~-~~~~~~-~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l   68 (542)
                      .+...|.||.|.+-            |..++++|..+.+ +|.... .-+..|+    -.-+.++...||.+|+..+++.
T Consensus       807 ~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V----h~R~~DssasVREAaldLvGrf  882 (1692)
T KOG1020|consen  807 ARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV----HGRLNDSSASVREAALDLVGRF  882 (1692)
T ss_pred             hhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH----HHhhccchhHHHHHHHHHHhhh
Confidence            46788888888763            6778888888877 333221 2223333    2334556789999999999987


Q ss_pred             HccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         69 MCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        69 ~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      .  -. ++...++     ...+..-..+....||+.++.+++.+|...|+...
T Consensus       883 v--l~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~  928 (1692)
T KOG1020|consen  883 V--LSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK  928 (1692)
T ss_pred             h--hccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh
Confidence            7  43 5554443     33566666778889999999999999987766544

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.41  E-value=0.02  Score=51.94  Aligned_cols=181  Identities=16%  Similarity=0.213  Sum_probs=116.9

Q ss_pred             HHH-HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCC-----hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHH
Q psy12594         17 RLC-FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKV-----PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVL   90 (542)
Q Consensus        17 r~~-~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~-----~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv   90 (542)
                      |.+ ++..+-.++.||+.|..|.++.+.-.|.++|+..+     +..|..++.+++.+.+..+++....+...+.+|..+
T Consensus        66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL  145 (262)
T PF04078_consen   66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL  145 (262)
T ss_dssp             HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence            444 55666677889999999999999888888886432     468899999999999545588889999999999999


Q ss_pred             HhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594         91 KDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP  170 (542)
Q Consensus        91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  170 (542)
                      +.+..++.-.|..|.+++.++..++.....+.              ..++-......+|.++.                 
T Consensus       146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC--------------~t~eRf~av~~vL~~mV-----------------  194 (262)
T PF04078_consen  146 RIMEFGSELSKTVATFILQKILLDDVGLNYIC--------------QTAERFFAVAMVLNKMV-----------------  194 (262)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHT--------------SSHHHHHHHHHHHHHHH-----------------
T ss_pred             HHHHhccHHHHHHHHHHHHHHHcchhHHHHHh--------------cCHHHHHHHHHHHHHHH-----------------
Confidence            99999999999999999999876553222211              12222222333333332                 


Q ss_pred             HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc--------CCCHHHHHHHHHHHHHH
Q psy12594        171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN--------NDEVNVKADAFLCLADI  236 (542)
Q Consensus       171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l  236 (542)
                        ..+.+++++.+.....++-..|+. ++..+..+..     .+-..++        ..|+.+++.-...+.|+
T Consensus       195 --~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~-----~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  195 --EQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ-----CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             --HHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH-----HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             --HHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH-----hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence              233455677788888888888887 5555555441     1112222        23566666666665554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.35  E-value=0.0094  Score=57.40  Aligned_cols=213  Identities=10%  Similarity=0.168  Sum_probs=152.1

Q ss_pred             HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHh--hchHH-HHHhhcCCChhHHHHHHHHH
Q psy12594        203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL-----ASTIAD--GATTL-AVEHLTYPHGLVQKNAATLL  274 (542)
Q Consensus       203 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~--~~~i~-L~~lL~~~~~~v~~~a~~~L  274 (542)
                      ..+...+.+..|+..|..-+-+.|..++..+.++-+.....     .+.+..  ..++. |+....  ++++--.+...|
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml  147 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence            34445688889999999889999999999999998765332     223322  23333 433333  567777788888


Q ss_pred             HHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC---chHHHHHhhcCCChhhH
Q psy12594        275 RDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ---GVGSLQTILQCPHKEQL  351 (542)
Q Consensus       275 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v  351 (542)
                      +.+.++ +..++.+.....+..+..+...++-++...|..++..+-..++.....++..+   +...+..++.++ +--+
T Consensus       148 Rec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvt  225 (335)
T PF08569_consen  148 RECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVT  225 (335)
T ss_dssp             HHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHH
T ss_pred             HHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEe
Confidence            888865 55556677788999999999999999999999999998887777776666553   566777888885 4588


Q ss_pred             HHHHHHHHHHhhcCChHH---HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhc
Q psy12594        352 QVAAAWTLGQIGKHSVDN---VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLL  421 (542)
Q Consensus       352 ~~~a~~~L~~l~~~~~~~---~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~  421 (542)
                      +..++..|+.+.......   .+.+-+...+..++.+|++.  +..+|.+|...+.=++.+..--+++..+|.
T Consensus       226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~  296 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVANPNKPPPIVDILI  296 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH-SS-BHHHHHHHH
T ss_pred             ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHhCCCCChHHHHHHH
Confidence            999999999997543322   23333557889999999987  578999999999888887766666666665

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.34  E-value=0.015  Score=52.88  Aligned_cols=218  Identities=16%  Similarity=0.195  Sum_probs=133.8

Q ss_pred             ChHHHHHHHHHHHHhHccCC-hHHHHHHHhc-CcHHHHHHh-------hccCC--H---HHHHHHHHHHHHHhcCChhhh
Q psy12594         54 VPSIQHAALATLGKLMCAKH-VDIRQEVLER-NLVALVLKD-------LTKQN--K---HYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        54 ~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~-~~l~~Lv~~-------L~~~~--~---~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      +++.|..|+.-|.+--  +. ++....+..+ |.+..|++=       ++.++  .   .-...++..|..++++.+...
T Consensus         8 ~~~~Re~Al~eLsk~r--~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~   85 (262)
T PF04078_consen    8 NPETRENALLELSKKR--ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRM   85 (262)
T ss_dssp             SHHHHHHHHHHHHHTC--CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHH
T ss_pred             CcchHHHHHHHHHHhh--hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHH
Confidence            5777888888777766  54 5554444443 555555442       22222  1   223455566666787664444


Q ss_pred             hHhhcCChHHHHhhhcCCC-----HHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHH
Q psy12594        120 GLIEDKDLDSIISSLHDFD-----PDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG  193 (542)
Q Consensus       120 ~~~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n  193 (542)
                      .+.+....-.|..+|+..+     ..+|..++.+++.+.. ++++....+.+.+++|..++.|+.++.-.+..|..++..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4888888777777776543     5788999999999984 456778888899999999999999988889999999998


Q ss_pred             HhcCCHHHHHHhhh--------CCCh-HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH--HH----Hh
Q psy12594        194 IVKHSPELAESASD--------CDVI-PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL--AV----EH  258 (542)
Q Consensus       194 l~~~~~~~~~~~~~--------~~~i-~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--L~----~l  258 (542)
                      |-.++ ..-..+..        ..++ ..+..+..++++.+..+.+++...|+.+. ..++.+..  .+|  |-    ..
T Consensus       166 IL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL~~--~LP~~Lrd~~f~~  241 (262)
T PF04078_consen  166 ILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREALRQ--CLPDQLRDGTFSN  241 (262)
T ss_dssp             HHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHHHH--HS-GGGTSSTTTT
T ss_pred             HHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHHHH--hCcHHHhcHHHHH
Confidence            87743 22222211        1122 22333455789999999999999999885 45554432  222  21    11


Q ss_pred             hcCCChhHHHHHHHHHHHH
Q psy12594        259 LTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       259 L~~~~~~v~~~a~~~L~~L  277 (542)
                      +-.+|+.++..-...+.|+
T Consensus       242 ~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  242 ILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             GGCS-HHHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            2223566666655555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG4151|consensus

Probab=97.32  E-value=0.0064  Score=63.01  Aligned_cols=226  Identities=15%  Similarity=0.070  Sum_probs=156.3

Q ss_pred             CChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHH-HhcCChhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHH
Q psy12594         72 KHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTC-VAQQDERCAGLIEDKDLDSIISSLHDFD-PDTRANAALAL  149 (542)
Q Consensus        72 ~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L  149 (542)
                      ....-+...+..|+...|+.+...+.+..+.....+|.. +.-.. +    .....++.+...++... ..-...++.++
T Consensus       492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~----~~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-E----RSYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-C----chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            345555666788999999999988888888888888872 21111 0    01134555555554332 22335678899


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHhhcCCCHHHHHH
Q psy12594        150 GGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD-CDVIPLLIKALNNDEVNVKAD  228 (542)
Q Consensus       150 ~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~  228 (542)
                      .|+++.+...++.+.+.-.++.+-.++..+++..|+.++..+.||..+.--....+++ ...++.....+...+......
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            9999888888888888877887777888889999999999999999843333344554 445666666666666777777


Q ss_pred             HHHHHHHHhcCChhhHH-HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh
Q psy12594        229 AFLCLADIAKDSPSLAS-TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID  302 (542)
Q Consensus       229 a~~~L~~l~~~~~~~~~-~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~  302 (542)
                      ++.++..+......+.. ......... +..++.+.++++++..+.+..|+.....+....+.....++.+..+-.
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~  722 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQK  722 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            77777766655444443 222245566 888899999999999998888877666666666666666665555433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.30  E-value=0.0097  Score=60.57  Aligned_cols=293  Identities=16%  Similarity=0.121  Sum_probs=151.5

Q ss_pred             HhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcC
Q psy12594         47 VPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDK  125 (542)
Q Consensus        47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g  125 (542)
                      +...+ .++.....|+..+.+..  .+ |+..+.     .+..++++..+++..+|..|+..|..+|.++++...    .
T Consensus        29 l~~~k-g~~k~K~Laaq~I~kff--k~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~----k   96 (556)
T PF05918_consen   29 LDGVK-GSPKEKRLAAQFIPKFF--KHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS----K   96 (556)
T ss_dssp             HHGGG-S-HHHHHHHHHHHHHHH--CC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH----H
T ss_pred             HHHcc-CCHHHHHHHHHHHHHHH--hhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh----H
Confidence            34444 46889999999999999  77 777554     567899999999999999999999999988755544    2


Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc---CCCHhHHHHHHHHHHHHhcC-CHHH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA---SPQLSLKHAAAFALDGIVKH-SPEL  201 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~nl~~~-~~~~  201 (542)
                      +...|+++|+++++.....+-.+|..+...++..        .+..+..-+.   ..+..+|+.++..|..-... .++.
T Consensus        97 vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~  168 (556)
T PF05918_consen   97 VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPEL  168 (556)
T ss_dssp             HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHH
Confidence            4568999999999887777778888777655442        2333444333   45678899988777532221 1111


Q ss_pred             HH--HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC----ChhhHHHHHhhchHH-HHHhh------cCCChhHHH
Q psy12594        202 AE--SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD----SPSLASTIADGATTL-AVEHL------TYPHGLVQK  268 (542)
Q Consensus       202 ~~--~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~-L~~lL------~~~~~~v~~  268 (542)
                      ..  .=.+.-++..+-+.|.+-..+--.....+|..+-..    ...-+.     .+++ +....      ...|++...
T Consensus       169 ~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~q-----eLv~ii~eQa~Ld~~f~~sD~e~Id  243 (556)
T PF05918_consen  169 LTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQ-----ELVDIIEEQADLDQPFDPSDPESID  243 (556)
T ss_dssp             S---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHH-----HHHHHHHHHHTTTS---SSSHHHHH
T ss_pred             hhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHH-----HHHHHHHHHhccCCCCCCcCHHHHH
Confidence            10  001111234555666654444444455555555431    111112     2233 22222      222555555


Q ss_pred             HHHHHHHH----HhcCC--hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594        269 NAATLLRD----MCKHN--LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI  342 (542)
Q Consensus       269 ~a~~~L~~----L~~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  342 (542)
                      ..+.|+..    ++...  ......+. ..++|.+-.+    ....+..-+.++..++.......    ....++.+..+
T Consensus       244 rli~C~~~Alp~fs~~v~Sskfv~y~~-~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d----~~~~L~~i~~~  314 (556)
T PF05918_consen  244 RLISCLRQALPFFSRGVSSSKFVNYMC-EKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD----ARQLLPSIFQL  314 (556)
T ss_dssp             HHHHHHHHHGGG-BTTB--HHHHHHHH-HHTCCCTT---------HHHHHHHHHHHHHTT----T----HHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHhcCCCChHHHHHHHH-HHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHH
Confidence            55555443    22211  22222222 2344433222    44567777888888776543211    11234444444


Q ss_pred             hc----CCC-h----hhHHHHHHHHHHHhhcCChHHHHHH
Q psy12594        343 LQ----CPH-K----EQLQVAAAWTLGQIGKHSVDNVTAL  373 (542)
Q Consensus       343 l~----~~~-~----~~v~~~a~~~L~~l~~~~~~~~~~l  373 (542)
                      |.    ... .    -...+..++++.+|+...|+....+
T Consensus       315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~l  354 (556)
T PF05918_consen  315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNFL  354 (556)
T ss_dssp             HHTTS----------HHHHHHHHHHHHHHHTT-THHHH--
T ss_pred             HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhhH
Confidence            42    211 1    2356778889999988887755444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1943|consensus

Probab=97.28  E-value=0.13  Score=55.42  Aligned_cols=163  Identities=11%  Similarity=0.046  Sum_probs=101.3

Q ss_pred             chHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC-ccchHHHHHHHhHhhcCChHHHH
Q psy12594        251 ATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMSAQSEQIAE  328 (542)
Q Consensus       251 ~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~  328 (542)
                      .+++ |+..+.+.|..++..|+..+..++...|..   +. ..++..+++++...+ +..-..|+.+|+.++...--.-.
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            6777 888889999999999999999999887622   11 355666677555544 44556788888888754221111


Q ss_pred             HHHhhCchHHHHHhhcCC-------ChhhHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHH
Q psy12594        329 QIIELQGVGSLQTILQCP-------HKEQLQVAAAWTLGQIGKHSV-DNVTALCEENVLSTLLSKITQTCVSDNLKSKCK  400 (542)
Q Consensus       329 ~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~  400 (542)
                      .+.  .++|.++.-+.-+       ....||.+||+.++.++.... .....+...=.-..|+..+-++  +..+|+.|.
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr--evncRRAAs  492 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR--EVNCRRAAS  492 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc--hhhHhHHHH
Confidence            111  3555555444321       225799999999999986643 3333333221222333444444  568999999


Q ss_pred             HHHHHHHhhCCCchhhHHhhc
Q psy12594        401 NALNILIPKCENPKELEQMLL  421 (542)
Q Consensus       401 ~aL~nl~~~~~~i~~L~~lL~  421 (542)
                      .|+...+.+.+..|.=++++.
T Consensus       493 AAlqE~VGR~~n~p~Gi~Lis  513 (1133)
T KOG1943|consen  493 AALQENVGRQGNFPHGISLIS  513 (1133)
T ss_pred             HHHHHHhccCCCCCCchhhhh
Confidence            999888766455543334443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.27  E-value=0.00078  Score=42.73  Aligned_cols=39  Identities=21%  Similarity=0.404  Sum_probs=35.3

Q ss_pred             HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594        200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK  238 (542)
Q Consensus       200 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  238 (542)
                      +.+..+.+.|+++.|++++.+.++++++.++|+|.||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            467778899999999999998899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1991|consensus

Probab=97.25  E-value=0.4  Score=51.44  Aligned_cols=385  Identities=15%  Similarity=0.106  Sum_probs=210.9

Q ss_pred             HHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc------c--CCHHHHHHHHHHHHHHhcC---ChhhhhHhhcCCh
Q psy12594         59 HAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT------K--QNKHYKKTALHMLTCVAQQ---DERCAGLIEDKDL  127 (542)
Q Consensus        59 ~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~------~--~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~v  127 (542)
                      .+|...+..+++...++.-     .+.++.+++.+.      .  .++.-+..|+.+++++++.   ....+...+.=++
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv  464 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence            3555566666632223331     345566667666      2  3355667788888888732   1111123333345


Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594        128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESAS  206 (542)
Q Consensus       128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~  206 (542)
                      +.+...++++--.+|..|||++..++..+-.  ..-.-..++......|. +.+..++..|+.+|..+.++.+.....+.
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            5666677788889999999999999832111  11111123556667777 66788999999999999986654323222


Q ss_pred             h--CCChHHHHHhhcCCCHHHHHHHHHH-HHHHhcCChhhHHHHHhhchHH-HHHhhcC---C---ChhHHHHHHHHHHH
Q psy12594        207 D--CDVIPLLIKALNNDEVNVKADAFLC-LADIAKDSPSLASTIADGATTL-AVEHLTY---P---HGLVQKNAATLLRD  276 (542)
Q Consensus       207 ~--~~~i~~L~~ll~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~---~---~~~v~~~a~~~L~~  276 (542)
                      .  .+.++.|+.+.+..+.+....+... +...+..-..+...+.+ .... ..+++..   .   +++=...|.++|+.
T Consensus       543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            0  2344455555555444444443333 33444332223333332 3444 5666663   1   23334455566655


Q ss_pred             Hhc------CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhh
Q psy12594        277 MCK------HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQ  350 (542)
Q Consensus       277 L~~------~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  350 (542)
                      +..      ..|+..+. .+.-+++.+-..|++.-.++-..++..+.++....++..-.++  +.++.+.+.+.... -+
T Consensus       622 i~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~-~d  697 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDG-ID  697 (1010)
T ss_pred             HHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhh-HH
Confidence            432      12333221 2334455555666666566666777777666655444333334  47777788887743 35


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHc-----CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC-----chhhHHhh
Q psy12594        351 LQVAAAWTLGQIGKHSVDNVTALCEE-----NVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN-----PKELEQML  420 (542)
Q Consensus       351 v~~~a~~~L~~l~~~~~~~~~~l~~~-----~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~-----i~~L~~lL  420 (542)
                      .-....-+|.|+......   .+.+.     -.+...-..+.+.+..+.=...|+..+.-++.+|+.     +|.++++.
T Consensus       698 yf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a  774 (1010)
T KOG1991|consen  698 YFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELA  774 (1010)
T ss_pred             HHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHH
Confidence            566778888887654322   12222     123344455555544445556688888888877766     66665532


Q ss_pred             c----C-CCCHHHHHHHHHHHHhhCCCChhh-hhHHHHhcchHH
Q psy12594        421 L----G-NVSEELLASILCAFAKILPCDPVA-RRSFVTSHCLRK  458 (542)
Q Consensus       421 ~----~-~~~~~v~~~~l~~l~~ll~~~~~~-~~~~~~~g~~~~  458 (542)
                      -    . ..+......++..+.|.+-..|.. ...+...|....
T Consensus       775 ~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~  818 (1010)
T KOG1991|consen  775 LSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNN  818 (1010)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            2    1 234456667777777666555543 233334444433

>KOG4151|consensus

Probab=97.21  E-value=0.0067  Score=62.91  Aligned_cols=219  Identities=14%  Similarity=0.092  Sum_probs=154.5

Q ss_pred             cCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHH-HhHccCC-hHHHHHHHhcCcHHHHHHhhccCC-HHHHHHH
Q psy12594         28 ADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLG-KLMCAKH-VDIRQEVLERNLVALVLKDLTKQN-KHYKKTA  104 (542)
Q Consensus        28 ~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~-~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~-~~~~~~a  104 (542)
                      +....-+...++.|+...|..+..-..+..+..+..+|. .+.  .. ...      ...++.+...+.... ..-...+
T Consensus       491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~~------~~v~~~~~s~~~~d~~~~en~E~  562 (748)
T KOG4151|consen  491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGERS------YEVVKPLDSALHNDEKGLENFEA  562 (748)
T ss_pred             hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCch------hhhhhhhcchhhhhHHHHHHHHH
Confidence            445666677788899999999887777777777777777 333  11 111      123334444443322 2334578


Q ss_pred             HHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhccCCCHh
Q psy12594        105 LHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ-CGALPPLVQILASPQLS  182 (542)
Q Consensus       105 ~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~  182 (542)
                      +.+++|+++.++..+. +.....++.+-.++..+++..+..++..+.||.....-+.+.+.+ ...++....++......
T Consensus       563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~  642 (748)
T KOG4151|consen  563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK  642 (748)
T ss_pred             HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence            8899999988777776 888888888778888889999999999999999866666666666 34566666666666778


Q ss_pred             HHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594        183 LKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL  254 (542)
Q Consensus       183 ~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  254 (542)
                      ...+++.++..|+......+. ..--......+..++.+.+.+++...+....|+.....+....+.+...++
T Consensus       643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~  715 (748)
T KOG4151|consen  643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVME  715 (748)
T ss_pred             HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHH
Confidence            888888888877765544444 333356678888999999999999999998887666555566666655555

>KOG3036|consensus

Probab=97.20  E-value=0.053  Score=48.33  Aligned_cols=143  Identities=14%  Similarity=0.160  Sum_probs=105.9

Q ss_pred             HHHHHHHhcCCCCchHHHHhCCchHHHHhhhc-----CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc
Q psy12594         20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA-----DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT   94 (542)
Q Consensus        20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~-----s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~   94 (542)
                      ++..+-.++.+|+.|..|.++.+=-.|-.+|.     ...+-.|..++.+++.|....+.+....+...+++|..++.+.
T Consensus        99 aL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime  178 (293)
T KOG3036|consen   99 ALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME  178 (293)
T ss_pred             HHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence            45556677889999999999887555666663     2356789999999999995445778888889999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHhcCChhhhhHhh--------cCChH-HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594         95 KQNKHYKKTALHMLTCVAQQDERCAGLIE--------DKDLD-SIISSLHDFDPDTRANAALALGGLAKDNKHFAERI  163 (542)
Q Consensus        95 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~g~v~-~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  163 (542)
                      .+++..+.-|.+++..+..++.....+..        .-.+. .+.++.+.+++.+...++++..+++. ++..+..+
T Consensus       179 ~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL  255 (293)
T KOG3036|consen  179 SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAAL  255 (293)
T ss_pred             cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            99999999999999998766544433111        01222 23344556778888899999999876 66655544

>KOG1991|consensus

Probab=97.18  E-value=0.12  Score=55.07  Aligned_cols=300  Identities=13%  Similarity=0.100  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhc------CC--ChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCc
Q psy12594         15 RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA------DK--VPSIQHAALATLGKLMCAKH-VDIRQEVLERNL   85 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~------s~--~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~   85 (542)
                      ..+..+...+..+++ ....+.+  .+.++.++..++      .+  ++.....|+..++.|++.-. +..-....+.=.
T Consensus       387 sp~~Aa~~~l~~~~~-KR~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl  463 (1010)
T KOG1991|consen  387 SPDTAALDFLTTLVS-KRGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL  463 (1010)
T ss_pred             CCcHHHHHHHHHHHH-hcchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            334444444555544 2223333  466777777776      22  34556678888888883222 222222234445


Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594         86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIV  164 (542)
Q Consensus        86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  164 (542)
                      ++.+...++++.-..|..||+++..++.-+-.... .-..+++...+.|. +.+--++..|+.+|..+.+..+...+.+.
T Consensus       464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~-~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPN-NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            66667778888899999999999999843211111 11235566667776 66677899999999999876554323332


Q ss_pred             Hc--CChHHHHHhccCCCHhHHHHHH-HHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC---C---CHHHHHHHHHHHHH
Q psy12594        165 QC--GALPPLVQILASPQLSLKHAAA-FALDGIVKHSPELAESASDCDVIPLLIKALNN---D---EVNVKADAFLCLAD  235 (542)
Q Consensus       165 ~~--g~i~~L~~ll~~~~~~~~~~a~-~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~---~---~~~~~~~a~~~L~~  235 (542)
                      ..  +.++.|+.+.+.-+.+....++ ..++..+..-......+. ......+.+++..   .   +.+-.-.|..+|..
T Consensus       543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            22  3455566666654422222222 222333322111222222 3344667777763   1   22222333333333


Q ss_pred             Hhc---CChhhHHHH--HhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccch
Q psy12594        236 IAK---DSPSLASTI--ADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNS  309 (542)
Q Consensus       236 l~~---~~~~~~~~~--~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~  309 (542)
                      +..   .-++..+.+  .+..+++ +-..|++.-.++-+.++....+++...++....+  -+.++.+.+.+......--
T Consensus       622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf  699 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYF  699 (1010)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHH
Confidence            321   111111111  2245566 6666777778888888888888876554333222  2455666777776666666


Q ss_pred             HHHHHHHhHhhc
Q psy12594        310 LPAIMALGYMSA  321 (542)
Q Consensus       310 ~~a~~~L~~l~~  321 (542)
                      ....-+|.|+..
T Consensus       700 ~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  700 TDMMPALHNYVT  711 (1010)
T ss_pred             HHHHHHHhhhee
Confidence            667778887765

>KOG1248|consensus

Probab=97.12  E-value=0.61  Score=51.13  Aligned_cols=228  Identities=14%  Similarity=0.090  Sum_probs=137.4

Q ss_pred             CCCHhHHHHHHHHHHHHhcCCHHHHHHhhh---CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594        178 SPQLSLKHAAAFALDGIVKHSPELAESASD---CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL  254 (542)
Q Consensus       178 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~---~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  254 (542)
                      +.+..+|..+...|..++.. +.. ....+   ..+...|.+-+++.+...+...+.+|..|-+..+.-...++...+.+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34688999999999999985 211 11111   11224444555556777888888888888776542222333334444


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCC------hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHH
Q psy12594        255 AVEHLTYPHGLVQKNAATLLRDMCKHN------LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAE  328 (542)
Q Consensus       255 L~~lL~~~~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  328 (542)
                      ++-.+++.+...++++..+|..++...      .+.....+ ...++.|...+-.+...+....+-++..+.....+...
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~l-nefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld  821 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAIL-NEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD  821 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHH-HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            444447779999999999999998310      00001111 12233333333333333333324455555432222111


Q ss_pred             HHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        329 QIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       329 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ...=.+++..+...|.+. .++++..|...+.-++...|+....-....+++.+..++++.  ...+|.+....|--|+.
T Consensus       822 ~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~--k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  822 DETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH--KIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHH
Confidence            111124566666777774 469999999999999888887655555556889999988876  35888888888888887


Q ss_pred             hCC
Q psy12594        409 KCE  411 (542)
Q Consensus       409 ~~~  411 (542)
                      +++
T Consensus       899 kfg  901 (1176)
T KOG1248|consen  899 KFG  901 (1176)
T ss_pred             HhC
Confidence            764

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.11  E-value=0.011  Score=49.59  Aligned_cols=124  Identities=17%  Similarity=0.228  Sum_probs=99.5

Q ss_pred             HHHHHHHcCChHHHHHhccCCC------HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHH
Q psy12594        159 FAERIVQCGALPPLVQILASPQ------LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAF  230 (542)
Q Consensus       159 ~~~~i~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~  230 (542)
                      +...++..++++.|++++.++.      .+....++.++..|..++ ......++..++..++..+...  +..+...++
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            3567888899999999998865      367778888999998865 3344555566777777777644  688999999


Q ss_pred             HHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594        231 LCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       231 ~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~  283 (542)
                      ..|-++...++.....+.+.--++ |+.+|+.++++++.++...+-.|....++
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            999999999887777777777788 99999999999999999999888765543

>KOG4653|consensus

Probab=97.07  E-value=0.019  Score=59.96  Aligned_cols=222  Identities=13%  Similarity=0.108  Sum_probs=137.3

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc
Q psy12594         45 LIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED  124 (542)
Q Consensus        45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  124 (542)
                      ..+..+.++.+.++..|+..|+++.  +..+....+...+++...++.|+++++.+...|+..+..+|.--       ..
T Consensus       731 eai~sl~d~qvpik~~gL~~l~~l~--e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-------~e  801 (982)
T KOG4653|consen  731 EAISSLHDDQVPIKGYGLQMLRHLI--EKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-------PE  801 (982)
T ss_pred             HHHHHhcCCcccchHHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------ch
Confidence            3444556666788999999999999  75555566667789999999999999999999999888887543       23


Q ss_pred             CChHHHHh-hhcCCC---HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594        125 KDLDSIIS-SLHDFD---PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE  200 (542)
Q Consensus       125 g~v~~Lv~-lL~~~~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~  200 (542)
                      ..+|.+.+ ..+..+   ++.+...-.++.++...-.+......+ -++..++..+++++...|..++..++++|.-..-
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~  880 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF  880 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence            56677766 333221   344444456666665322222222222 3467788888888888999999999999973221


Q ss_pred             HHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHh---hchHH-HHHhhcCC-ChhHHHHHHHHH
Q psy12594        201 LAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIAD---GATTL-AVEHLTYP-HGLVQKNAATLL  274 (542)
Q Consensus       201 ~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~-L~~lL~~~-~~~v~~~a~~~L  274 (542)
                      .....+ ...+..++.+.. +....+|+.|+..+..+-.......-.+..   ..... +.+..... +..++..++.++
T Consensus       881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            111111 122333444444 557789999999998887654321111111   12223 33333333 455666666555


Q ss_pred             HHH
Q psy12594        275 RDM  277 (542)
Q Consensus       275 ~~L  277 (542)
                      -.+
T Consensus       960 eei  962 (982)
T KOG4653|consen  960 EEI  962 (982)
T ss_pred             HHH
Confidence            443

>KOG2274|consensus

Probab=97.07  E-value=0.16  Score=53.77  Aligned_cols=222  Identities=15%  Similarity=0.152  Sum_probs=143.4

Q ss_pred             CCChHHHHHHHHHHHHhHccC--ChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChH
Q psy12594         52 DKVPSIQHAALATLGKLMCAK--HVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD  128 (542)
Q Consensus        52 s~~~~v~~~a~~~L~~l~~~~--~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~  128 (542)
                      ++.|..-..+.-++...++..  .+.....     .+...+..+. +..+.++..|+.+++..++.  ....-...++++
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-----fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~p~ild  533 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQH-----FLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQPMILD  533 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHH-----HHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccchHHHH
Confidence            445666667777777666221  1222111     2333344444 45577888888888887722  111123446778


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc--CCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594        129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA--SPQLSLKHAAAFALDGIVKHSPELAESAS  206 (542)
Q Consensus       129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nl~~~~~~~~~~~~  206 (542)
                      .|.++......++......+|...+.-+|+. ....++.+.|.++.++.  +++|.+...+-.++..++. ...+... .
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~-m  610 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGP-M  610 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcc-h
Confidence            8888888778888888888999988878774 34445566776666553  3457777777777777776 2222222 2


Q ss_pred             hCCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcCChh-hHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhc
Q psy12594        207 DCDVIPLLIKALNNDE----VNVKADAFLCLADIAKDSPS-LASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCK  279 (542)
Q Consensus       207 ~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~  279 (542)
                      ....+|.++..+..+.    ......++..|..+.+..+. ..+.+.. -+.| +.++.-++ |.+...++..||+.+..
T Consensus       611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            3567899999998665    67888888888888776543 4444443 4556 77666554 88999999999999876


Q ss_pred             CChHH
Q psy12594        280 HNLRL  284 (542)
Q Consensus       280 ~~~~~  284 (542)
                      ...+.
T Consensus       690 ~~~eq  694 (1005)
T KOG2274|consen  690 VTLEQ  694 (1005)
T ss_pred             cCHHH
Confidence            65443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.06  E-value=0.027  Score=49.42  Aligned_cols=92  Identities=21%  Similarity=0.302  Sum_probs=73.6

Q ss_pred             CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHh
Q psy12594        180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEH  258 (542)
Q Consensus       180 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~l  258 (542)
                      ++.+|..++.+++.|+...|...+     ..++.+...|.++++.+|..|+.+|..|...+.--.    ...++. ++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence            467899999999999986554443     446899999999999999999999999987642111    123336 8889


Q ss_pred             hcCCChhHHHHHHHHHHHHhcC
Q psy12594        259 LTYPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       259 L~~~~~~v~~~a~~~L~~L~~~  280 (542)
                      +.+++++++..|..++..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999876

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.05  E-value=0.02  Score=50.28  Aligned_cols=93  Identities=17%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q psy12594         97 NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL  176 (542)
Q Consensus        97 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll  176 (542)
                      ++.+|..++.+++.++..-+....    ..++.+...|+++++.+|..|+.+|.+|...+.--    .+..++..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHH
Confidence            478899999999999865544333    45789999999999999999999999998532110    0112247788889


Q ss_pred             cCCCHhHHHHHHHHHHHHhcC
Q psy12594        177 ASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       177 ~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      .+++++++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999884

>KOG1020|consensus

Probab=97.04  E-value=0.85  Score=51.36  Aligned_cols=142  Identities=13%  Similarity=0.145  Sum_probs=92.7

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      +.+..++..+..+-..+|..|+++|..+.  .-+...-  ....+-..+-.-+.+....||..|+..++......++...
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~iv--e~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIV--EADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHH--hcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence            45667777777777899999999999999  5422110  1112223344456667889999999999985433333222


Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc---cCCCHhHHHHHHHHHHHHhc
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL---ASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll---~~~~~~~~~~a~~~L~nl~~  196 (542)
                          .....+..-..++...||..+++.+..++...|.+...      +....+++   .++...++..+..++.++-.
T Consensus       892 ----qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 ----QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             ----HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence                12234555556677899999999999999877775322      33344444   34445588888888888765

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.04  E-value=0.0056  Score=47.19  Aligned_cols=92  Identities=18%  Similarity=0.181  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC
Q psy12594        142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND  221 (542)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~  221 (542)
                      |..++.+|..++..-+.......+ .++++++..+.+++..+|..|+.+|.|++.......-.. -..+.+.|.+++.++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence            455666666666433332222222 358999999999999999999999999998543222221 245678889999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy12594        222 EVNVKADAFLCLADI  236 (542)
Q Consensus       222 ~~~~~~~a~~~L~~l  236 (542)
                      ++.++..| +.|-++
T Consensus        81 d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   81 DENVRSAA-ELLDRL   94 (97)
T ss_pred             chhHHHHH-HHHHHH
Confidence            99987766 555554

>KOG4653|consensus

Probab=97.04  E-value=0.02  Score=59.76  Aligned_cols=223  Identities=13%  Similarity=0.082  Sum_probs=146.6

Q ss_pred             HHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594        172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA  251 (542)
Q Consensus       172 L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  251 (542)
                      -+..+.++.+.++-.++..|..+.+ ..+....+...+++..+...+++.|+.+--+|+..+..||.-.++        .
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~  802 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------D  802 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------h
Confidence            3445566668899999999999998 335556666788999999999999999999999988888876442        5


Q ss_pred             hHH-HHHhhcCC----ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHH
Q psy12594        252 TTL-AVEHLTYP----HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQI  326 (542)
Q Consensus       252 ~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~  326 (542)
                      ++| +.....+.    ..+.+-.+-.++.++...-.+....-. ...+.......++++...|..++..+|+++.-..-.
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence            667 66643322    234555555777777654333322221 134555666667777778999999999998644322


Q ss_pred             HHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHH---cCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594        327 AEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCE---ENVLSTLLSKITQTCVSDNLKSKCKNAL  403 (542)
Q Consensus       327 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~l~~L~~ll~~~~~~~~v~~~a~~aL  403 (542)
                      .... -..++..++.+.+.+....+|.+|...+..+..+..+..-.+..   .+....+......++ ++.+|..|+-++
T Consensus       882 vsd~-~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~-dd~~klhaql~l  959 (982)
T KOG4653|consen  882 VSDF-FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHD-DDGLKLHAQLCL  959 (982)
T ss_pred             hhHH-HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence            2221 12466667777777666789999999999887665543333332   234455555555543 456777777666


Q ss_pred             HHH
Q psy12594        404 NIL  406 (542)
Q Consensus       404 ~nl  406 (542)
                      -.+
T Consensus       960 eei  962 (982)
T KOG4653|consen  960 EEI  962 (982)
T ss_pred             HHH
Confidence            544

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.03  E-value=0.0053  Score=47.34  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH--hhchHH-HHHhhc
Q psy12594        184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA--DGATTL-AVEHLT  260 (542)
Q Consensus       184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~-L~~lL~  260 (542)
                      |..++.+|...+..-+....... ..++++++..+.+++..+|..|+.+|.|+++...   ..+.  -..+.+ |..++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHc
Confidence            55667777777665444444333 5677999999999999999999999999997642   2222  256788 999999


Q ss_pred             CCChhHHHHHH
Q psy12594        261 YPHGLVQKNAA  271 (542)
Q Consensus       261 ~~~~~v~~~a~  271 (542)
                      ++++.|+..|.
T Consensus        79 D~d~~Vr~~a~   89 (97)
T PF12755_consen   79 DPDENVRSAAE   89 (97)
T ss_pred             CCchhHHHHHH
Confidence            99999887774

>KOG3036|consensus

Probab=97.02  E-value=0.23  Score=44.44  Aligned_cols=144  Identities=17%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-----CHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHH
Q psy12594        101 KKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-----DPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQ  174 (542)
Q Consensus       101 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~  174 (542)
                      ...++..|..++++.+....+.+...--.+-.+|...     ..-+|..++.+++.+.. ++.+....+...++||..++
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            4456666666777764444487777666666666533     36789999999999984 45567777888899999999


Q ss_pred             hccCCCHhHHHHHHHHHHHHhcCCHHHH------H--HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy12594        175 ILASPQLSLKHAAAFALDGIVKHSPELA------E--SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS  245 (542)
Q Consensus       175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~------~--~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  245 (542)
                      .+..++...+..|..++..|-.++.-..      +  ..+..-.-..+.++.+.+++.+..+++++..+|+.+. ..+.
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-rar~  253 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-RARA  253 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-HHHH
Confidence            9999999999999999999887542111      1  1111111134455566788999999999999998764 3444

>KOG2062|consensus

Probab=97.00  E-value=0.034  Score=57.15  Aligned_cols=155  Identities=16%  Similarity=0.124  Sum_probs=98.1

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHh-hhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594        255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL-IDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL  333 (542)
Q Consensus       255 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  333 (542)
                      +-+++.+.|+-+|......+..--.+..       +.+++..|++. .++.+..|+.+|+.+||-++..+++.       
T Consensus       524 I~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-------  589 (929)
T KOG2062|consen  524 IKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-------  589 (929)
T ss_pred             HHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-------
Confidence            4456666688888776655432211111       23456667776 67788899999999999988887754       


Q ss_pred             CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-C-
Q psy12594        334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-E-  411 (542)
Q Consensus       334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-~-  411 (542)
                        ++..+++|..+.++.||..++.+||-.|++.-...       ++..|=.+..++  ..-||..|+-++.-++.++ + 
T Consensus       590 --~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~  658 (929)
T KOG2062|consen  590 --LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQ  658 (929)
T ss_pred             --chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccc
Confidence              45567788777778999999999999988754211       223333334433  4468998988888775332 1 


Q ss_pred             -------CchhhHHhhcCCCCHHHHHHHHHH
Q psy12594        412 -------NPKELEQMLLGNVSEELLASILCA  435 (542)
Q Consensus       412 -------~i~~L~~lL~~~~~~~v~~~~l~~  435 (542)
                             +.+.+.+++. ++.++........
T Consensus       659 ~~pkv~~frk~l~kvI~-dKhEd~~aK~GAi  688 (929)
T KOG2062|consen  659 LCPKVNGFRKQLEKVIN-DKHEDGMAKFGAI  688 (929)
T ss_pred             cCchHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence                   2244445555 5555544443333

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.98  E-value=0.036  Score=46.53  Aligned_cols=122  Identities=14%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             HHHhhhCCChHHHHHhhcCCC------HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHH
Q psy12594        202 AESASDCDVIPLLIKALNNDE------VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAAT  272 (542)
Q Consensus       202 ~~~~~~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~  272 (542)
                      ...++..++++.|++++.++.      .++...++.++..|..++.-..+ ......+. ++......  |..+...+..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence            456778999999999999765      47888899999999988643444 44456666 77777765  7899999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh
Q psy12594        273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE  324 (542)
Q Consensus       273 ~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  324 (542)
                      .|-++..+++.....+.+.-.++.|+..|+..++.++..++..+-.|-...+
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            9999999998877777777789999999999999999999988777655433

>KOG2062|consensus

Probab=96.96  E-value=0.025  Score=58.08  Aligned_cols=127  Identities=14%  Similarity=0.130  Sum_probs=89.2

Q ss_pred             HHHHHhhhcCCccchHHHHHHHhH--hhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHH
Q psy12594        295 DGLLRLIDCNGGYNSLPAIMALGY--MSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA  372 (542)
Q Consensus       295 ~~Lv~lL~~~~~~~~~~a~~~L~~--l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  372 (542)
                      +.+-+++.+.++-+|..++.+++-  ...++         .+++..|+..--+..+++||.+|..+||-++..+|++   
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---  589 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---  589 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence            445567777888788877765542  22222         3567777777555556799999999999999988884   


Q ss_pred             HHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC---chhhHHhhcCCCCHHHHHHHHHHHHhhCC
Q psy12594        373 LCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN---PKELEQMLLGNVSEELLASILCAFAKILP  441 (542)
Q Consensus       373 l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~---i~~L~~lL~~~~~~~v~~~~l~~l~~ll~  441 (542)
                            .+..+.+|..+ .++.||..++.||+-.+...|.   +..|..+.. +...-|++-++-++.-|+-
T Consensus       590 ------~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  590 ------LPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS-DPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             ------chHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHH
Confidence                  46778888765 4789999999999987755432   555666655 5555677777777665543

>KOG1967|consensus

Probab=96.96  E-value=0.011  Score=62.10  Aligned_cols=186  Identities=17%  Similarity=0.158  Sum_probs=126.1

Q ss_pred             hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH-------------HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHH
Q psy12594        169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPEL-------------AESASDCDVIPLLIKALNNDEVNVKADAFLCLAD  235 (542)
Q Consensus       169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~-------------~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  235 (542)
                      ...|+.+|+++  ++-..++.++.-+..+++..             ++.++ ..++|.|...+...+...+..-..+|.+
T Consensus       817 a~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            34566777654  33444555566555544322             22333 5678899988886677788888889999


Q ss_pred             HhcCChhhHHHH-HhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC---ccchH
Q psy12594        236 IAKDSPSLASTI-ADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG---GYNSL  310 (542)
Q Consensus       236 l~~~~~~~~~~~-~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~~~~  310 (542)
                      +-.+-|. .... .-..++| |++.|+-+|..++..+..++.-+....+.....-+ .-.+|.++.+-.+.+   ..+|.
T Consensus       894 Vl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  894 VLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHH
Confidence            8887663 2111 1256788 89999999999999999999887765544332111 245677777766665   34899


Q ss_pred             HHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHH
Q psy12594        311 PAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLG  360 (542)
Q Consensus       311 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  360 (542)
                      .|+.+|+.|...-|...-...+..++..|...|.+ +...+|++|..+=+
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD-kKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD-KKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCc-HHHHHHHHHHHHhh
Confidence            99999999988544443334445788889999988 45688998886643

>KOG2274|consensus

Probab=96.93  E-value=0.4  Score=50.89  Aligned_cols=227  Identities=14%  Similarity=0.113  Sum_probs=146.9

Q ss_pred             CCHHHHHHHHHHHHHhhcCC---hHHHHHHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594        137 FDPDTRANAALALGGLAKDN---KHFAERIVQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP  212 (542)
Q Consensus       137 ~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~  212 (542)
                      ..|.+...+.+++...+...   +.....+     +...+..+. +..+.++..|+.+++..+.  ++..... ..++++
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~f-----l~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild  533 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQLLQHF-----LNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILD  533 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchhHHHHH-----HHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHH
Confidence            34666668888888776532   2222222     222333333 3447788888888887773  2222222 256778


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CC-ChhHHHHHHHHHHHHhcCChHHHHHHH
Q psy12594        213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YP-HGLVQKNAATLLRDMCKHNLRLANLVV  289 (542)
Q Consensus       213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~  289 (542)
                      .|+++....+.++......+|+..+.-+++... ..+..+.| .+.+.. .. |+.+...+-.++-.++. ...+...+ 
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m-  610 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPM-  610 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcch-
Confidence            888998888999999999999999998875544 44557777 555543 33 78777777777777774 22222212 


Q ss_pred             hcCCHHHHHHhhhcCCc----cchHHHHHHHhHhhcCCh-HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594        290 LAGGLDGLLRLIDCNGG----YNSLPAIMALGYMSAQSE-QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK  364 (542)
Q Consensus       290 ~~~~i~~Lv~lL~~~~~----~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  364 (542)
                      ....+|.++..+..+++    .....|+..|..+.++.+ ...+.++ .-+.|.+.++.-+..+......+..+|..+..
T Consensus       611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            23578999999988773    355566667776666443 3333343 36788888887776666777789999998887


Q ss_pred             CChHHHHHHHH
Q psy12594        365 HSVDNVTALCE  375 (542)
Q Consensus       365 ~~~~~~~~l~~  375 (542)
                      .+.++...--.
T Consensus       690 ~~~eq~~t~~~  700 (1005)
T KOG2274|consen  690 VTLEQLLTWHD  700 (1005)
T ss_pred             cCHHHHHhhcc
Confidence            77665544433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.88  E-value=0.54  Score=46.51  Aligned_cols=128  Identities=14%  Similarity=0.214  Sum_probs=98.3

Q ss_pred             Hhh-cCChHHHHhhhcCCC---HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc-C---CCHhHHHHHHHHHH
Q psy12594        121 LIE-DKDLDSIISSLHDFD---PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA-S---PQLSLKHAAAFALD  192 (542)
Q Consensus       121 ~~~-~g~v~~Lv~lL~~~~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~---~~~~~~~~a~~~L~  192 (542)
                      +++ ......|...+++..   +.+-..|+..+..+....|.....+.+.|+++.+++.+. .   ++.++....-.+|+
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            666 556677777777654   788889999999999989999999999999999999888 3   24677777778889


Q ss_pred             HHhcCCHHHHHHhhhCCChHHHHHhhcCCC-------HHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594        193 GIVKHSPELAESASDCDVIPLLIKALNNDE-------VNVKADAFLCLADIAKDSPSLASTIAD  249 (542)
Q Consensus       193 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~  249 (542)
                      .||- +.+..+.+.+.+.++.+.+++.+++       .+.....-..+-.|.++.|..+..+.+
T Consensus       181 AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  181 AICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9998 7788999999999999999987542       133344445666777777766665443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1248|consensus

Probab=96.87  E-value=0.44  Score=52.20  Aligned_cols=222  Identities=14%  Similarity=0.090  Sum_probs=137.1

Q ss_pred             cCCHHHHHHHHHHHHHHhcCChhhhhHh---hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChH
Q psy12594         95 KQNKHYKKTALHMLTCVAQQDERCAGLI---EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK-HFAERIVQCGALP  170 (542)
Q Consensus        95 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~  170 (542)
                      +.+..+|..+..+|..++... ......   -..+...|.+-+++.....+...+.+|..+....+ ++...+ ..- |+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~-I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKL-IP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHH-HH
Confidence            457889999999999988762 222211   11344556666666667778888888888775444 332332 222 55


Q ss_pred             HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh---CCChHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhh
Q psy12594        171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD---CDVIPLLIKALNN----DEVNVKADAFLCLADIAKDSPSL  243 (542)
Q Consensus       171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~---~~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~  243 (542)
                      -++-+++..+...++.+..+|..|+...  ......+   ...+..++..+..    ....+...-+-++..+.....+.
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~--~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~  819 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQ--SSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI  819 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHH--hhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence            5555558888889999999998888310  0000000   1133444444432    22333333245555554433333


Q ss_pred             HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      .....-.+++. +...|.+.+++++..|+..+.-++..-|+..-.-.....++.+..+++.....++...-..+-.++.
T Consensus       820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            33333356777 8888899999999999999999988777655434445678888888887777777766666665553

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.80  E-value=0.21  Score=48.20  Aligned_cols=201  Identities=11%  Similarity=0.142  Sum_probs=141.3

Q ss_pred             HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH-----HHHhhh--CCChHHHHHhhcCCCHHHHHHHHHHH
Q psy12594        161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL-----AESASD--CDVIPLLIKALNNDEVNVKADAFLCL  233 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~-----~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L  233 (542)
                      ..+...+.+..|+..|..-+-+.|..+..+..++.......     ...+..  ..++..|+.-..  ++++.-.+-..|
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml  147 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence            45556688999999999888899999999999998754332     222321  223444444444  455666666677


Q ss_pred             HHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc---CCHHHHHHhhhcCCccch
Q psy12594        234 ADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA---GGLDGLLRLIDCNGGYNS  309 (542)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~~i~~Lv~lL~~~~~~~~  309 (542)
                      ...+++. .+...+.....+. +......++-++...|..++..+-...+.........   ..+.....+|.+++.-.+
T Consensus       148 Rec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  148 RECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            7777764 5777888888888 9999999999999999999998655554443333332   456788889999999999


Q ss_pred             HHHHHHHhHhhcCChHH---HHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594        310 LPAIMALGYMSAQSEQI---AEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH  365 (542)
Q Consensus       310 ~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  365 (542)
                      ..++..||.+.......   ...+-+..-+..++.+|++.+ ..+|.+|-..+--++++
T Consensus       227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-
T ss_pred             hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhC
Confidence            99999999998654432   234445577888999999855 58999999888777665

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.76  E-value=0.17  Score=49.99  Aligned_cols=143  Identities=17%  Similarity=0.195  Sum_probs=105.9

Q ss_pred             HHHHH-cCChHHHHHhccCCC---HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-C---CCHHHHHHHHHH
Q psy12594        161 ERIVQ-CGALPPLVQILASPQ---LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-N---DEVNVKADAFLC  232 (542)
Q Consensus       161 ~~i~~-~g~i~~L~~ll~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~---~~~~~~~~a~~~  232 (542)
                      +.+++ ..+...|...++...   +.+-..|+.++..+....|.....+.+.|.++.+++.+. .   ++.++....-.+
T Consensus        99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~  178 (379)
T PF06025_consen   99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV  178 (379)
T ss_pred             ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            33445 445566667776654   788899999999999988988889999999999998887 3   367888888899


Q ss_pred             HHHHhcCChhhHHHHHhhchHH-HHHhhcCCC-------hhHHHHHHHHHHHHhcCChHHHHHHHhc--CCHHHHHHhhh
Q psy12594        233 LADIAKDSPSLASTIADGATTL-AVEHLTYPH-------GLVQKNAATLLRDMCKHNLRLANLVVLA--GGLDGLLRLID  302 (542)
Q Consensus       233 L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~i~~Lv~lL~  302 (542)
                      |..||-+. ...+.+.+.+.++ +++++.+++       .+.-...-..+-.|.+|.|.....+.+.  ..+..+..+-+
T Consensus       179 l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~  257 (379)
T PF06025_consen  179 LSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGK  257 (379)
T ss_pred             HhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999886 4778888889999 999988762       2444555667778899998877655542  23444444444


Q ss_pred             cC
Q psy12594        303 CN  304 (542)
Q Consensus       303 ~~  304 (542)
                      ..
T Consensus       258 ~~  259 (379)
T PF06025_consen  258 DK  259 (379)
T ss_pred             cc
Confidence            33

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1078|consensus

Probab=96.73  E-value=0.98  Score=47.36  Aligned_cols=245  Identities=14%  Similarity=0.097  Sum_probs=127.6

Q ss_pred             hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy12594        169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA  248 (542)
Q Consensus       169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  248 (542)
                      .+.+-.++++....+...|+.++.++....+...     ...+..|..+++++..-+|-.|.++|..++...|.... ..
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l-----~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~c  320 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL-----APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VC  320 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc-----chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-cc
Confidence            4555566777778899999999999887543322     23678888888889999999999999999987653221 11


Q ss_pred             hhchHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHH------------
Q psy12594        249 DGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL------------  316 (542)
Q Consensus       249 ~~~~i~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L------------  316 (542)
                      .   .+|-++..+.+-.+...|...|..-  +.......+.  .-++..+.-+.++..-+...|+++|            
T Consensus       321 N---~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm--~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m  393 (865)
T KOG1078|consen  321 N---LDLESLITDSNRSIATLAITTLLKT--GTESSVDRLM--KQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMM  393 (865)
T ss_pred             c---hhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHH--HHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHH
Confidence            0   0133333333333333333322211  1111111111  1122222222222222333333333            


Q ss_pred             -----------------------hHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHH
Q psy12594        317 -----------------------GYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTAL  373 (542)
Q Consensus       317 -----------------------~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  373 (542)
                                             ..+...+++...     .++..|...+.+..   ...-+.+.|.-++...|.   ..
T Consensus       394 ~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce---~~~i~~rILhlLG~EgP~---a~  462 (865)
T KOG1078|consen  394 NFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE---FTQIAVRILHLLGKEGPK---AP  462 (865)
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc---chHHHHHHHHHHhccCCC---CC
Confidence                                   333332222211     23333333333321   122233333333222111   01


Q ss_pred             HHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCc-----hhhHHhhcCCCCHHHHHHHHHHHHhhC
Q psy12594        374 CEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENP-----KELEQMLLGNVSEELLASILCAFAKIL  440 (542)
Q Consensus       374 ~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i-----~~L~~lL~~~~~~~v~~~~l~~l~~ll  440 (542)
                      -....+..+.+...=+  +..+|.+|..||.++...+..+     -.|.+.+. ++|.+++..+--++.++.
T Consensus       463 ~Pskyir~iyNRviLE--n~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~-D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  463 NPSKYIRFIYNRVILE--NAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLN-DSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             CcchhhHHHhhhhhhh--hhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhc-CchHHHHHHHHHHHHHhh
Confidence            1223455555555444  3589999999999998554432     34555666 899999999998888875

>KOG1967|consensus

Probab=96.72  E-value=0.013  Score=61.65  Aligned_cols=147  Identities=17%  Similarity=0.233  Sum_probs=109.2

Q ss_pred             cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH--cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594        124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ--CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL  201 (542)
Q Consensus       124 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~  201 (542)
                      ...+|.|++.....+...+..-..+|.++...-|.  +.+..  ....|.|++.|.-++..+|..+..++..+....+..
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL  943 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL  943 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence            35889999999866667777777788887765554  22222  256889999999999999999999998877655444


Q ss_pred             HHHhhhCCChHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHH
Q psy12594        202 AESASDCDVIPLLIKALNNDE---VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATL  273 (542)
Q Consensus       202 ~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~  273 (542)
                      ...-+ ...+|.++.+=++.+   ..+|..|+.+|..|.+.-|...-.-....++. |...|.++.--+|..|..+
T Consensus       944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            44433 456677777776655   67999999999999996554433444567888 9999999988888888765

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.69  E-value=0.028  Score=51.46  Aligned_cols=100  Identities=22%  Similarity=0.122  Sum_probs=85.6

Q ss_pred             chHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHh
Q psy12594        308 NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKIT  387 (542)
Q Consensus       308 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~  387 (542)
                      ....|++.|--++--++..+..+-+...+..|+.++.....+.++.+++.+|..+...++.+.+.+-+.+++..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            45567788888887778888888899999999999966555789999999999999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHHH
Q psy12594        388 QTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       388 ~~~~~~~v~~~a~~aL~nl~  407 (542)
                      +...+.++|.++...|.-.+
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccccHHHhHHHHHHHHHHH
Confidence            98878888888877765544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PRK14707 hypothetical protein; Provisional

Probab=96.64  E-value=2.1  Score=50.06  Aligned_cols=410  Identities=16%  Similarity=0.136  Sum_probs=211.6

Q ss_pred             hHHHHhhhc--CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCChhh
Q psy12594         43 VDLIVPLLA--DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        43 i~~L~~lL~--s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      +.+|++-.+  .+++..+..+......++  .++..+..+ ....+..++.-++.  +++..+..+ ..|.....+.+..
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~--~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa-~~la~~l~~~~~l  240 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVA--SDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAV-SALAERLADESRL  240 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhc--CChhhhccc-chHHHHHHHHHHhcCCCChhHHHHH-HHHHHHHcCcHHH
Confidence            344444443  234555655555555555  555554444 44566666766664  445555444 4444433334455


Q ss_pred             hhHhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHH-HHHhc
Q psy12594        119 AGLIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL-DGIVK  196 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L-~nl~~  196 (542)
                      ..-.+...+-..++.|.. ++..+...++..|..-....+..++.+-..++-..|-.+-+=++..+-..|+..| ..|..
T Consensus       241 ~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~  320 (2710)
T PRK14707        241 RNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD  320 (2710)
T ss_pred             HHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence            443344445555555543 4554555555555543334566666665555333333444445644444444444 44554


Q ss_pred             CCHHHHHHhhhCCChHHHHHhhcC-CC-HHHHHHHHHHHHHHhcCChhhHHHHHhhchHHHHHhhcCC-ChhHHHHHHHH
Q psy12594        197 HSPELAESASDCDVIPLLIKALNN-DE-VNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYP-HGLVQKNAATL  273 (542)
Q Consensus       197 ~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~L~~lL~~~-~~~v~~~a~~~  273 (542)
                       +++.+..+- .-.+...++-|+. ++ ...+..+...-..++.+ ++.++.+-..++-.+++-++.- +..+...++..
T Consensus       321 -d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d-~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        321 -DPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVAD-PELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             -cHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccC-HhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence             777765544 3344444455543 33 44455555555555555 4566655544544455555554 77777777777


Q ss_pred             HHHHhcCChHHHHHHHhcCCHHHHHHhh-hcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHH
Q psy12594        274 LRDMCKHNLRLANLVVLAGGLDGLLRLI-DCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ  352 (542)
Q Consensus       274 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~  352 (542)
                      |..=..++++..+.+- ...+..++.-| +=++..+-..+...|..-..++.+.++.+--.++...|-.+-+- ++..+-
T Consensus       398 LA~~l~~d~~l~~~~~-~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKW-Pd~p~c  475 (2710)
T PRK14707        398 LAEHVVDDLELRKGLD-PQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKW-PDTPIC  475 (2710)
T ss_pred             HHHHhccChhhhhhcc-hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcC-CCChhH
Confidence            7765556777666554 34444444444 44666677777777777667777777655444444444344344 444444


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCch---------hhHHhhcCC
Q psy12594        353 VAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPK---------ELEQMLLGN  423 (542)
Q Consensus       353 ~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~---------~L~~lL~~~  423 (542)
                      ..|+..|..=..++++.++.+--.++...|-.+-+-++ .....+.+.|.-..+... ..++         .+..-|...
T Consensus       476 ~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd-~~~c~~A~~~lA~rl~~~-~~l~~~~~~~~~~~~lnalSKw  553 (2710)
T PRK14707        476 GQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPD-TPICAEAASALAERVVDE-LQLRKAFDAHQVVNTLKALSKW  553 (2710)
T ss_pred             HHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHhccc-hhhhhhhhhHHHHHHHHhhhcC
Confidence            44444444433666666665554555555555555553 233333444444444321 1111         111112113


Q ss_pred             CCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC
Q psy12594        424 VSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE  463 (542)
Q Consensus       424 ~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~  463 (542)
                      .+......+...|...+...+..+..|-..+..-.+..+.
T Consensus       554 p~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLS  593 (2710)
T PRK14707        554 PDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALS  593 (2710)
T ss_pred             CchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhc
Confidence            4445566666666665555555555555444333344444

>KOG1832|consensus

Probab=96.64  E-value=0.09  Score=55.23  Aligned_cols=327  Identities=11%  Similarity=0.080  Sum_probs=171.4

Q ss_pred             HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHH-HHHHHHHhHccCChHHHHHH------HhcCcHHHHHHh
Q psy12594         20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA-ALATLGKLMCAKHVDIRQEV------LERNLVALVLKD   92 (542)
Q Consensus        20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~-a~~~L~~l~~~~~~~~~~~i------~~~~~l~~Lv~~   92 (542)
                      +.+.|+.++.+......|++.|||..|+..   +.+..... .-.+|..|.  ......+.+      +-..++..-+.+
T Consensus       373 ~~k~~~~l~~h~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~--~~q~~mervc~~p~~v~~~vv~~~~~l  447 (1516)
T KOG1832|consen  373 VMKLICALAAHRKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIG--SLQGIMERVCALPLVVIHQVVKLAIEL  447 (1516)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHh--hhhhHHHHHhhccHHHHHHHHHHHHHH
Confidence            466778888888899999999998766554   22322222 225566665  322222211      122344444555


Q ss_pred             hccCC------HHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcC--------CC---HHHH--------HHHHH
Q psy12594         93 LTKQN------KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHD--------FD---PDTR--------ANAAL  147 (542)
Q Consensus        93 L~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~--------~~---~~~~--------~~a~~  147 (542)
                      |.-..      ...-..+++.++.+...      +-....+..|+.++++        .+   +++.        ...|.
T Consensus       448 ~~cs~~~~~~~~~~ff~~~f~frail~~------fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~  521 (1516)
T KOG1832|consen  448 LDCSQDQARKNSALFFAAAFVFRAILDA------FDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCF  521 (1516)
T ss_pred             HhcchhhccchHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHH
Confidence            65332      23333444444443211      2222445555555431        22   2222        23444


Q ss_pred             HHHHhhc-----CChHHHHHHHHcCChHHHHHhccCCC------HhHHHHHHHHHHHHhcCCHH-------HHHHhhhCC
Q psy12594        148 ALGGLAK-----DNKHFAERIVQCGALPPLVQILASPQ------LSLKHAAAFALDGIVKHSPE-------LAESASDCD  209 (542)
Q Consensus       148 ~L~~l~~-----~~~~~~~~i~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~nl~~~~~~-------~~~~~~~~~  209 (542)
                      +|.....     .-+.+++.-+..|.++..+.-+..+.      ..-.++.+|-+..+....+.       ..+.+...+
T Consensus       522 alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls  601 (1516)
T KOG1832|consen  522 ALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLS  601 (1516)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhH
Confidence            4443321     12333444455566666665444332      23445566666655554442       334455667


Q ss_pred             ChHHHHHhhcCC--------CHHHHHHHHHHHHHHhcCChhhHHHHHh--------hchHH-HHHhhcCC----ChhHHH
Q psy12594        210 VIPLLIKALNND--------EVNVKADAFLCLADIAKDSPSLASTIAD--------GATTL-AVEHLTYP----HGLVQK  268 (542)
Q Consensus       210 ~i~~L~~ll~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~~~i~-L~~lL~~~----~~~v~~  268 (542)
                      ++..++++..-+        ..++...|+.+|.-+..- |+.+..+..        ..++. ++..-...    |++++.
T Consensus       602 ~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~  680 (1516)
T KOG1832|consen  602 GVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQ  680 (1516)
T ss_pred             HHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHH
Confidence            788888877632        244566666666544433 345544433        12344 33332221    799999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc-CCcc----------chHHHHHHHhHhhcCChHHHHHHHhhCchH
Q psy12594        269 NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC-NGGY----------NSLPAIMALGYMSAQSEQIAEQIIELQGVG  337 (542)
Q Consensus       269 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~----------~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  337 (542)
                      .|+.++.|+....|+.....        ++....+ +++.          .....++-          .-..+...+++.
T Consensus       681 ~AL~vIincVc~pp~~r~s~--------i~~v~S~~g~~r~~l~~~~ks~~le~~l~~----------mw~~Vr~ndGIk  742 (1516)
T KOG1832|consen  681 PALNVIINCVCPPPTTRPST--------IVAVGSQSGDRRIFLGAGTKSAKLEQVLRQ----------MWEAVRGNDGIK  742 (1516)
T ss_pred             HHHhhhheeecCCCCcchhh--------hhhccccCCCccccccCCCchHHHHHHHHH----------HHHHHhcCccHH
Confidence            99999999988876554322        1222221 1111          11111111          123345568999


Q ss_pred             HHHHhhcCCCh----hhHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594        338 SLQTILQCPHK----EQLQVAAAWTLGQIGKHSVDNVTALCEEN  377 (542)
Q Consensus       338 ~L~~ll~~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~  377 (542)
                      .|+.+|+....    +.+|..||++|.-|+ .+++.++.+.+..
T Consensus       743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLa-R~~tVrQIltKLp  785 (1516)
T KOG1832|consen  743 ILLKLLQYKNPPTTADCIRALACRVLLGLA-RDDTVRQILTKLP  785 (1516)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHHhccc-cCcHHHHHHHhCc
Confidence            99999975332    579999999999994 5566666655443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.57  E-value=0.11  Score=49.79  Aligned_cols=188  Identities=16%  Similarity=0.065  Sum_probs=113.9

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH--cCChHHHHHhccCCCHhHHHHHHHHHHHHhcC--CHHHHH
Q psy12594        128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ--CGALPPLVQILASPQLSLKHAAAFALDGIVKH--SPELAE  203 (542)
Q Consensus       128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~--~~~~~~  203 (542)
                      ...+..+.+.....|+.++..+.++...... .+.+.+  ..+++.+.+.++.+..+-+..|+.++.-++-.  ......
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            3445555566688899999888887743322 122221  14577888888887765566677777766653  223344


Q ss_pred             HhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhc---CChhhHHHHHhhchHH-HHHh--hcC----------CChh
Q psy12594        204 SASDCDVIPLLIKALNND--EVNVKADAFLCLADIAK---DSPSLASTIADGATTL-AVEH--LTY----------PHGL  265 (542)
Q Consensus       204 ~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~-L~~l--L~~----------~~~~  265 (542)
                      .++ ....|.|.+.+.+.  .+.+|..++.+|+-++.   .+++.....  ...+. +...  .+.          +++.
T Consensus       125 ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~  201 (309)
T PF05004_consen  125 EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAA  201 (309)
T ss_pred             HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence            555 45678888888865  35666777767666543   222211100  11222 2111  111          1356


Q ss_pred             HHHHHHHHHHHHhcCChHH-HHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        266 VQKNAATLLRDMCKHNLRL-ANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       266 v~~~a~~~L~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                      +...|+.+-..|...-+.. ..... ...++.|+.+|.+++..+|.+|..+|.-|-
T Consensus       202 l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  202 LVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7888877766666554442 22222 356899999999999999999999888663

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1566|consensus

Probab=96.53  E-value=0.69  Score=43.13  Aligned_cols=215  Identities=11%  Similarity=0.183  Sum_probs=149.8

Q ss_pred             HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH----HHHH-hhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594        202 AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA----STIA-DGATTL-AVEHLTYPHGLVQKNAATLLR  275 (542)
Q Consensus       202 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~-~~~~i~-L~~lL~~~~~~v~~~a~~~L~  275 (542)
                      ...+.++|.+..+++.+..-+-+-+..+.....++-+.....+    +.+. ...++. |+.--.. .+++.-.+...|+
T Consensus        72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            3456668999999999998888899999999988876443222    2222 234444 4444222 3666666666666


Q ss_pred             HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCc----hHHHHHhhcCCChhhH
Q psy12594        276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG----VGSLQTILQCPHKEQL  351 (542)
Q Consensus       276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~~v  351 (542)
                      ...++ +..++.+....-+.....+...+.-++...|..+...+..........+...+.    .+..-.++.+++ --+
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N-yvt  228 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN-YVT  228 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc-eeh
Confidence            66644 455566777788888899999998889999999998887766655555555443    333556777754 478


Q ss_pred             HHHHHHHHHHhhcCChH---HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhc
Q psy12594        352 QVAAAWTLGQIGKHSVD---NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLL  421 (542)
Q Consensus       352 ~~~a~~~L~~l~~~~~~---~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~  421 (542)
                      +..+...++.+..+.+.   ..+.+.+...+..++.+|+++  +..+|.+|-....-+..+..--+++..+|.
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk--skniQ~eAFhvFKvfvAnpnK~q~V~~IL~  299 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK--SKNIQLEAFHVFKVFVANPNKPQPVRDILV  299 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc--cccchHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            88999999998765432   334444557899999999987  468999998888777766544555555555

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.53  E-value=0.3  Score=46.89  Aligned_cols=171  Identities=19%  Similarity=0.176  Sum_probs=116.6

Q ss_pred             CChHHHH-hhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CHHHH
Q psy12594        125 KDLDSII-SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH-SPELA  202 (542)
Q Consensus       125 g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~~~~  202 (542)
                      +.++.|+ ..+++.++.+|+.++.+|+-.+--+.......     ++.+.+.++.++.+++..|+.++..+... +.+..
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4444444 77788999999999999998886555433332     67788888777899999999999887652 22222


Q ss_pred             HHhh-------hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC----ChhHHHHH
Q psy12594        203 ESAS-------DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP----HGLVQKNA  270 (542)
Q Consensus       203 ~~~~-------~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~----~~~v~~~a  270 (542)
                      ....       ....+..+.+.+.+.+++++..++..++.|--.+. ...   ...++. |+-+.-++    +..++...
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~-i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR-ISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-CCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            1111       23456788888888899999999999999865542 111   124455 44443333    46777777


Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC
Q psy12594        271 ATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG  305 (542)
Q Consensus       271 ~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  305 (542)
                      ...+-..+..++.+.+.+ ...+++.+-.+.+..+
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l-~~~f~~~l~~~~~~~~  210 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERL-AEAFLPTLRTLSNAPD  210 (298)
T ss_pred             HHHHHHHHcCCHHHHHHH-HHHHHHHHHHHHhCcc
Confidence            777888887777776544 4567777777666544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.51  E-value=0.023  Score=48.56  Aligned_cols=145  Identities=17%  Similarity=0.173  Sum_probs=96.7

Q ss_pred             hHHHHhhhc--CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         43 VDLIVPLLA--DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        43 i~~L~~lL~--s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      +..++..+.  ...+++|..+..++.++.....++..+.+     -+.+-..+...+.+-...++.++..+-...++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~-----~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKI-----SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            344444443  46789999999999988611112222222     12223334443344677778888888878888777


Q ss_pred             --HhhcCChHHHHhhhc--CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-CCHh-HHHHHHHHHHHH
Q psy12594        121 --LIEDKDLDSIISSLH--DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-PQLS-LKHAAAFALDGI  194 (542)
Q Consensus       121 --~~~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~-~~~~a~~~L~nl  194 (542)
                        +...|.++.++.++.  ..+..++..++.+|..-+. +..++..+.+.| ++.|-++++. ++.. ++..|+-.|..+
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhcC
Confidence              557799999999998  6778888888887776554 667677776666 9999999964 4555 788888777653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1243|consensus

Probab=96.47  E-value=0.023  Score=58.25  Aligned_cols=228  Identities=14%  Similarity=0.148  Sum_probs=148.8

Q ss_pred             CchHHHHhCCchHHHHhhhcCCC-hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHH
Q psy12594         32 STIHFLKDLNVVDLIVPLLADKV-PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTC  110 (542)
Q Consensus        32 ~~~~~l~~~g~i~~L~~lL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~  110 (542)
                      ..-+.+....++|.|...+.-.+ .......+..+.+..  ..++     ...+++|.++++++..+..+|..-+.-+-.
T Consensus       284 ~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~l--d~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~  356 (690)
T KOG1243|consen  284 NFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDL--DEEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEK  356 (690)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhc--cccc-----cccchhhhHHHHhcCcchHHHHHHHHhHHH
Confidence            34445555667777777665544 222222222233332  2222     356789999999999999999886665555


Q ss_pred             HhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHH
Q psy12594        111 VAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAF  189 (542)
Q Consensus       111 l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~  189 (542)
                      ...   .... +++..++|.+...+.+.++.+|+.++.++..++..-.   +..+....+..|-++-.+++..+|....-
T Consensus       357 ~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~---~~~Ln~Ellr~~ar~q~d~~~~irtntti  430 (690)
T KOG1243|consen  357 YID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS---KRNLNGELLRYLARLQPDEHGGIRTNTTI  430 (690)
T ss_pred             Hhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc---hhhhcHHHHHHHHhhCccccCccccccee
Confidence            442   3333 6677889999999999999999999999998874211   11222223444444444556889999999


Q ss_pred             HHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHH
Q psy12594        190 ALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQK  268 (542)
Q Consensus       190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~  268 (542)
                      ||+.++.+.....   ...-.+..+.+-++++-..-|..+.++++.....-+   ..-+...++| +..+..+++..++.
T Consensus       431 clgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~e~~vr~  504 (690)
T KOG1243|consen  431 CLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLTVDPEKTVRD  504 (690)
T ss_pred             eecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccccCcccchhh
Confidence            9999988642222   212234566667777877888888888877655432   2223447888 88888888888988


Q ss_pred             HHHHHHHHHh
Q psy12594        269 NAATLLRDMC  278 (542)
Q Consensus       269 ~a~~~L~~L~  278 (542)
                      .+..++...-
T Consensus       505 ~a~~~i~~fl  514 (690)
T KOG1243|consen  505 TAEKAIRQFL  514 (690)
T ss_pred             HHHHHHHHHH
Confidence            8887766554

>KOG3665|consensus

Probab=96.47  E-value=0.43  Score=51.15  Aligned_cols=194  Identities=15%  Similarity=0.083  Sum_probs=122.7

Q ss_pred             HHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchH-H-HHHhhcCCCh-h
Q psy12594        190 ALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATT-L-AVEHLTYPHG-L  265 (542)
Q Consensus       190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~-L~~lL~~~~~-~  265 (542)
                      +|.+++...++.++.+++.+++..+...+... ..+++..+...+.+++...+..........+- . +-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            78899999999999999999999999999855 56799999999999998653211111111111 2 2234444444 8


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHH-HHHhhc
Q psy12594        266 VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGS-LQTILQ  344 (542)
Q Consensus       266 v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~ll~  344 (542)
                      .-+.++..|..+..+.+..........+-..+++               ++..+...   ....... ..... +..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e---------------~i~~~~~~---~~~~~~~-~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVE---------------AISRWLTS---EIRVIND-RSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHH---------------HhhccCcc---ceeehhh-hhcchhHHHHhc
Confidence            8888888888887654431110001111111111               12211111   1111111 22222 556666


Q ss_pred             CCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594        345 CPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL  403 (542)
Q Consensus       345 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL  403 (542)
                      .+..+..+.-|.|++.+++..+++..+.+.+.++++.+.++-..+. ..+++.++...+
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i  692 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSE-VVDVKEEAVLVI  692 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHH-HHHHHHHHHHHh
Confidence            6555678888999999999999999999999999999888777654 455666655443

>KOG0414|consensus

Probab=96.46  E-value=0.054  Score=58.74  Aligned_cols=158  Identities=13%  Similarity=0.151  Sum_probs=118.6

Q ss_pred             cHHHHHHhhc----cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHH
Q psy12594         85 LVALVLKDLT----KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHF  159 (542)
Q Consensus        85 ~l~~Lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~  159 (542)
                      ..|.+++..+    .++|+++..|.-+|+.+..-+.+...    ..+|.|+..+. +++|.+|..+.-+++.++...|..
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            4455556654    36789999999999997654433322    35788888887 778999999999999888655543


Q ss_pred             HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594        160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD  239 (542)
Q Consensus       160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  239 (542)
                      .+..     -+.|...|+++++.+|+.|..+|.+|...     ..+.-.|.++-+..++.+++.+++..|-..+-.|+..
T Consensus       996 ie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  996 IEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             cchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            2222     56788889999999999999999999872     2233378899999999999999999998888888876


Q ss_pred             ChhhHHHHHhhchHH-HHHhhcCC
Q psy12594        240 SPSLASTIADGATTL-AVEHLTYP  262 (542)
Q Consensus       240 ~~~~~~~~~~~~~i~-L~~lL~~~  262 (542)
                      ....      .+++| ++..|++.
T Consensus      1066 ~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred             ccch------hhhchHHHHhhccC
Confidence            5322      26778 88888776

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.45  E-value=1.8  Score=46.96  Aligned_cols=207  Identities=15%  Similarity=0.170  Sum_probs=120.1

Q ss_pred             HHHHhcCcHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhc----CCC----HHHHH
Q psy12594         78 QEVLERNLVALVLKDLTK-----QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLH----DFD----PDTRA  143 (542)
Q Consensus        78 ~~i~~~~~l~~Lv~~L~~-----~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~----~~~----~~~~~  143 (542)
                      ..+.+.|++..++..+.+     .....-...+.+|...+.-. .+++ +++.|+++.|+..+.    ...    +.+-+
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E  189 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE  189 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence            344578999999998875     22344445555666656554 5555 888999999988874    333    55556


Q ss_pred             HHHHHHHHhhcCChH----HHHHHHHcC--------ChHHHHHhccCC----CHhHHHHHHHHHHHHhcCCHHHHHHhhh
Q psy12594        144 NAALALGGLAKDNKH----FAERIVQCG--------ALPPLVQILASP----QLSLKHAAAFALDGIVKHSPELAESASD  207 (542)
Q Consensus       144 ~a~~~L~~l~~~~~~----~~~~i~~~g--------~i~~L~~ll~~~----~~~~~~~a~~~L~nl~~~~~~~~~~~~~  207 (542)
                      ..+.++..+......    .........        -+..|++.+.++    ++.+....+++|-+|+.++++..+.++ 
T Consensus       190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv-  268 (802)
T PF13764_consen  190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV-  268 (802)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH-
Confidence            666655555432111    000101111        266677766654    488999999999999998888777766 


Q ss_pred             CCChHHHHHhhc--CC----CHHHHHHHHHHHHHHhcC----C--hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHH
Q psy12594        208 CDVIPLLIKALN--ND----EVNVKADAFLCLADIAKD----S--PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLL  274 (542)
Q Consensus       208 ~~~i~~L~~ll~--~~----~~~~~~~a~~~L~~l~~~----~--~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L  274 (542)
                          ..+-..++  ..    .++- ...+.+++.++..    .  ...++.+.+.|++. .+..|...-+...       
T Consensus       269 ----~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~-------  336 (802)
T PF13764_consen  269 ----EHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLK-------  336 (802)
T ss_pred             ----HHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccc-------
Confidence                33444433  11    1111 1224445555432    1  34677888889888 8887766533330       


Q ss_pred             HHHhcCChHHHHHHHhcCCHHHHHHhhh
Q psy12594        275 RDMCKHNLRLANLVVLAGGLDGLLRLID  302 (542)
Q Consensus       275 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~  302 (542)
                       +  ..++++.+ ......+|.++.+|.
T Consensus       337 -~--~~s~eWk~-~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  337 -N--TDSPEWKE-FLSRPSLPYILRLLR  360 (802)
T ss_pred             -c--CCCHHHHH-HhcCCcHHHHHHHHH
Confidence             0  13444444 334455555555543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.42  E-value=0.0084  Score=47.54  Aligned_cols=73  Identities=10%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      .++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..++.++.++  +++||.+|..|+..++.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE--DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S--SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence            47888999997766778888999999999999998877777889999999999987  57999999999987764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2032|consensus

Probab=96.38  E-value=0.38  Score=47.61  Aligned_cols=289  Identities=14%  Similarity=0.073  Sum_probs=146.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHhCCchHH----HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcH
Q psy12594         11 DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDL----IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLV   86 (542)
Q Consensus        11 ~~~~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~----L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l   86 (542)
                      ++|++-|..-...+.++...+...    +.|.+..    +..-..+++..++..|+..|.+.++.. ++-.... ....+
T Consensus       228 s~~~~~ritd~Af~ael~~~~~l~----~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th-~~~~l  301 (533)
T KOG2032|consen  228 SEKENGRITDIAFFAELKRPKELD----KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKVRTH-KTTQL  301 (533)
T ss_pred             hhcccchHHHHHHHHHHhCccccc----ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHHHHh-HHHHH
Confidence            344444555555555555433322    3344333    333334566788999999999999432 3332222 22345


Q ss_pred             HHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHH
Q psy12594         87 ALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK-HFAERI  163 (542)
Q Consensus        87 ~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i  163 (542)
                      ..++.-|-+ .+.++..+++.+|..+........- ..-..+.-.+..+..+.++++|..+...++.++.-.. ..++.+
T Consensus       302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~F  381 (533)
T KOG2032|consen  302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFF  381 (533)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhh
Confidence            556655554 5689999999998887643222111 2222345567788889999999999988888772111 112222


Q ss_pred             H---HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHH--HHHHhc
Q psy12594        164 V---QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLC--LADIAK  238 (542)
Q Consensus       164 ~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~--L~~l~~  238 (542)
                      .   ..+ ...|+-.+.++++.+-.++ ......+..+- .++...  +.   +-+.+ +.+.. +-.+...  ...+..
T Consensus       382 te~v~k~-~~~lllhl~d~~p~va~AC-r~~~~~c~p~l-~rke~~--~~---~q~~l-d~~~~-~~q~Fyn~~c~~L~~  451 (533)
T KOG2032|consen  382 TEQVKKR-LAPLLLHLQDPNPYVARAC-RSELRTCYPNL-VRKELY--HL---FQESL-DTDMA-RFQAFYNQWCIQLNH  451 (533)
T ss_pred             HHHHHhc-cccceeeeCCCChHHHHHH-HHHHHhcCchh-HHHHHH--HH---Hhhhh-HHhHH-HHHHHHHHHHHHHhh
Confidence            2   223 3345555677777665544 44444443111 122211  11   11111 11111 1111100  001111


Q ss_pred             CChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHH-HHHHhcCCHHHHHHhhhcCCccchHHHHHHH
Q psy12594        239 DSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLA-NLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL  316 (542)
Q Consensus       239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L  316 (542)
                      ..++..-     -... ...+++..-+.++..+...-.++..+..... ...........+-.+.+++-++++..|..++
T Consensus       452 i~~d~l~-----~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al  526 (533)
T KOG2032|consen  452 IHPDILM-----LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKAL  526 (533)
T ss_pred             hCHHHHH-----HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHh
Confidence            1111100     0111 2333444456677766665555554433222 2222223455677778888899999998888


Q ss_pred             hHhh
Q psy12594        317 GYMS  320 (542)
Q Consensus       317 ~~l~  320 (542)
                      +-+.
T Consensus       527 ~~l~  530 (533)
T KOG2032|consen  527 DLLS  530 (533)
T ss_pred             hhHh
Confidence            7654

>KOG2032|consensus

Probab=96.33  E-value=0.25  Score=48.81  Aligned_cols=262  Identities=15%  Similarity=0.054  Sum_probs=138.1

Q ss_pred             cCcHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCCh
Q psy12594         83 RNLVALVLKDL----TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNK  157 (542)
Q Consensus        83 ~~~l~~Lv~~L----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~  157 (542)
                      .|.+..++..+    ++++..++..|+..|++.+++.|+...-...-.+..++.-|-++ +.+|..++..+|..+...- 
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-  331 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-  331 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-
Confidence            45555555544    45778999999999999998855544433344566666666555 4889999999888876311 


Q ss_pred             HHHHHHHHcCCh---HHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHH----HhhhCCChHHHHHhhcCCCHHHHHHHH
Q psy12594        158 HFAERIVQCGAL---PPLVQILASPQLSLKHAAAFALDGIVKHSPELAE----SASDCDVIPLLIKALNNDEVNVKADAF  230 (542)
Q Consensus       158 ~~~~~i~~~g~i---~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~----~~~~~~~i~~L~~ll~~~~~~~~~~a~  230 (542)
                        ...-+..+.+   -.+..+..+.++++|.++...++.|+.-.....+    ..+ .+....|+-.+.++++.+- .||
T Consensus       332 --~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v-~k~~~~lllhl~d~~p~va-~AC  407 (533)
T KOG2032|consen  332 --SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV-KKRLAPLLLHLQDPNPYVA-RAC  407 (533)
T ss_pred             --hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH-HhccccceeeeCCCChHHH-HHH
Confidence              1111222333   3466677888899999999888887753211111    112 1223344445566776654 455


Q ss_pred             HHHHHHhcCChhhHHHHHhhchHHHHHhhcCCChhHHHH---HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCcc
Q psy12594        231 LCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKN---AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY  307 (542)
Q Consensus       231 ~~L~~l~~~~~~~~~~~~~~~~i~L~~lL~~~~~~v~~~---a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~  307 (542)
                      ......|..+- .++...  +.++  ..+ +.+.. +..   .-|| ..+....++.......     ....++++.-+.
T Consensus       408 r~~~~~c~p~l-~rke~~--~~~q--~~l-d~~~~-~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~  474 (533)
T KOG2032|consen  408 RSELRTCYPNL-VRKELY--HLFQ--ESL-DTDMA-RFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQ  474 (533)
T ss_pred             HHHHHhcCchh-HHHHHH--HHHh--hhh-HHhHH-HHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHH
Confidence            55555554332 222111  1111  111 11111 111   1111 1233333443332221     223344444456


Q ss_pred             chHHHHHHHhHhhcCChHHHHHHHh-hCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594        308 NSLPAIMALGYMSAQSEQIAEQIIE-LQGVGSLQTILQCPHKEQLQVAAAWTLGQIG  363 (542)
Q Consensus       308 ~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  363 (542)
                      ++.++...-.+...+.......... ......+..+.+. +-++++..+..++..+.
T Consensus       475 vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~d-p~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  475 VREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRD-PRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccC-CCchhHHHHHHHhhhHh
Confidence            7777776666655443332222221 2233444455554 55688888888887764

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=96.33  E-value=0.16  Score=53.81  Aligned_cols=165  Identities=15%  Similarity=0.139  Sum_probs=98.2

Q ss_pred             chHH-HHHhhcCC----ChhHHHHHHHHHHHHhc----CChHHHHHHHhcCCHHHHHHhhhc----CCccchHHHHHHHh
Q psy12594        251 ATTL-AVEHLTYP----HGLVQKNAATLLRDMCK----HNLRLANLVVLAGGLDGLLRLIDC----NGGYNSLPAIMALG  317 (542)
Q Consensus       251 ~~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~----~~~~~~~~~~~~~~i~~Lv~lL~~----~~~~~~~~a~~~L~  317 (542)
                      ..+. +..++.++    .+.++..+.-+++.+..    +.+.... .+....++.+...|..    .+...+...+++||
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            3455 66777654    45677777777776643    2221101 1112345555555543    44556777899999


Q ss_pred             HhhcCChHHHHHHHhhCchHHHHHhhcC--CChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHH
Q psy12594        318 YMSAQSEQIAEQIIELQGVGSLQTILQC--PHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNL  395 (542)
Q Consensus       318 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v  395 (542)
                      |+...           ..++.+..++..  ..+..+|..|+++|..++...+..        +-+.++.++.+...+.++
T Consensus       472 N~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence            98543           234444555542  123579999999999997656554        337778888887778899


Q ss_pred             HHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHH
Q psy12594        396 KSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCA  435 (542)
Q Consensus       396 ~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~  435 (542)
                      |..|..+|...--....+..+...+..+.+.+|...+...
T Consensus       533 RiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~  572 (574)
T smart00638      533 RMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSH  572 (574)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHh
Confidence            9999988865422222344444544423445665555443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.31  E-value=1.5  Score=47.46  Aligned_cols=238  Identities=13%  Similarity=0.105  Sum_probs=147.7

Q ss_pred             HHHhCCchHHHHhhhcCC-----ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc----cCC----HHHHH
Q psy12594         36 FLKDLNVVDLIVPLLADK-----VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT----KQN----KHYKK  102 (542)
Q Consensus        36 ~l~~~g~i~~L~~lL~s~-----~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~----~~~----~~~~~  102 (542)
                      .+.++||+..++.++.+-     ....-...+..|..++  +-+.+++.+.+.+.++.|++.+.    ...    +.+-.
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~--Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E  189 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC--KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE  189 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH--hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence            456799999999998752     2344455667777777  66999999999999999998775    333    56666


Q ss_pred             HHHHHHHHHhcCChh--hh--h-HhhcC--------ChHHHHhhhcCC----CHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy12594        103 TALHMLTCVAQQDER--CA--G-LIEDK--------DLDSIISSLHDF----DPDTRANAALALGGLAKDNKHFAERIVQ  165 (542)
Q Consensus       103 ~a~~~L~~l~~~~~~--~~--~-~~~~g--------~v~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~~~i~~  165 (542)
                      ..+.++..+......  ..  . .....        -+..|++.+++.    ++.+....+++|-.++.++++..+.+++
T Consensus       190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~  269 (802)
T PF13764_consen  190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE  269 (802)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence            666666665432211  11  1 11111        366777777654    4888899999999999988887666644


Q ss_pred             cCChHHHHHhcc--CC-CHhHHHHHHHHHHHHhcCC------HHHHHHhhhCCChHHHHHhhcCC--------CHH----
Q psy12594        166 CGALPPLVQILA--SP-QLSLKHAAAFALDGIVKHS------PELAESASDCDVIPLLIKALNND--------EVN----  224 (542)
Q Consensus       166 ~g~i~~L~~ll~--~~-~~~~~~~a~~~L~nl~~~~------~~~~~~~~~~~~i~~L~~ll~~~--------~~~----  224 (542)
                      .  +.+.+++=+  .. .++- ..-+.+++.++..-      ...++.+++.|++...+..+...        +++    
T Consensus       270 ~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~  346 (802)
T PF13764_consen  270 H--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF  346 (802)
T ss_pred             H--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence            3  122222111  11 1111 22355666665432      46778899999999888777532        222    


Q ss_pred             ----HHHHHHHHHHHHhcCChhhHHHHHhhchHHHHHhhcCC--ChhHHHHHHHHHHHHhc
Q psy12594        225 ----VKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYP--HGLVQKNAATLLRDMCK  279 (542)
Q Consensus       225 ----~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~L~~lL~~~--~~~v~~~a~~~L~~L~~  279 (542)
                          -.-.++..|.-|+......+.. ....++++++.|...  +..+=.-|=.+|-.|..
T Consensus       347 l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  347 LSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             hcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence                2345778888889887655554 555667766666554  34444444444444444

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=96.25  E-value=0.12  Score=55.35  Aligned_cols=197  Identities=21%  Similarity=0.242  Sum_probs=107.5

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc----CCHHHHHHHHHHHHHHhc-
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK----QNKHYKKTALHMLTCVAQ-  113 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~----~~~~~~~~a~~~L~~l~~-  113 (542)
                      ...+..+..++.+..-. -..|...|..+.  .. ...-.     ..+..+..++..    .++.++..|+..++.+.. 
T Consensus       394 ~~av~~i~~~I~~~~~~-~~ea~~~l~~l~--~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~  465 (618)
T PF01347_consen  394 NPAVKFIKDLIKSKKLT-DDEAAQLLASLP--FHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHK  465 (618)
T ss_dssp             HHHHHHHHHHHHTT-S--HHHHHHHHHHHH--HT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCC-HHHHHHHHHHHH--hhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence            45566777777764322 222445555555  22 11111     234445555542    557778777777776642 


Q ss_pred             ---CC------hhhhhHhhcCChHHHHhhhc----CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-
Q psy12594        114 ---QD------ERCAGLIEDKDLDSIISSLH----DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-  179 (542)
Q Consensus       114 ---~~------~~~~~~~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-  179 (542)
                         ..      ......+....++.+...+.    ..+.+-+..++.+|+|+..  +         ..++.|..++... 
T Consensus       466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~  534 (618)
T PF01347_consen  466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKE  534 (618)
T ss_dssp             HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS
T ss_pred             eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcc
Confidence               21      01111233345666666665    4566788889999999974  1         2377788888776 


Q ss_pred             --CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-
Q psy12594        180 --QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-  254 (542)
Q Consensus       180 --~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-  254 (542)
                        +..+|..|+++|..++...++..        .+.+.+++.+.  +.++|..|..+|..   ..|..       ..+. 
T Consensus       535 ~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~  596 (618)
T PF01347_consen  535 EVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQR  596 (618)
T ss_dssp             -S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHH
T ss_pred             ccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHH
Confidence              58899999999999987665322        25677777644  67888888766654   22211       2344 


Q ss_pred             HHHhhcCC-ChhHHHHHHHH
Q psy12594        255 AVEHLTYP-HGLVQKNAATL  273 (542)
Q Consensus       255 L~~lL~~~-~~~v~~~a~~~  273 (542)
                      +...+... +..|...+...
T Consensus       597 i~~~l~~E~~~QV~sfv~S~  616 (618)
T PF01347_consen  597 IAQSLWNEPSNQVASFVYSH  616 (618)
T ss_dssp             HHHHHTT-S-HHHHHHHHHH
T ss_pred             HHHHHhhCchHHHHHHHHHh
Confidence            55666544 56665555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0414|consensus

Probab=96.25  E-value=0.073  Score=57.82  Aligned_cols=158  Identities=20%  Similarity=0.224  Sum_probs=121.6

Q ss_pred             ChHHHHHhccC----CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh
Q psy12594        168 ALPPLVQILAS----PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPS  242 (542)
Q Consensus       168 ~i~~L~~ll~~----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~  242 (542)
                      +.|.+++..+.    .+|++|.+|.-+|+.+..-+.+.+..-     +|.|+..+. ++++.+|.+++-+++.++-.-|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            46777777754    359999999999999988777766554     488999998 77899999999999999877665


Q ss_pred             hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      ..+     ..-+ |...|.+.++.+|+.|.-.|.+|-..+-     +.-.|.++.+..+|.+++..++.-|-.....|+.
T Consensus       995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            554     3456 8899999999999999999999975332     3335889999999999999988888777777765


Q ss_pred             CChHHHHHHHhhCchHHHHHhhcCC
Q psy12594        322 QSEQIAEQIIELQGVGSLQTILQCP  346 (542)
Q Consensus       322 ~~~~~~~~~~~~~~l~~L~~ll~~~  346 (542)
                      ...    .++  +++|-++.-|..+
T Consensus      1065 k~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1065 KGN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred             ccc----chh--hhchHHHHhhccC
Confidence            432    121  4666666666654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.20  E-value=0.31  Score=46.79  Aligned_cols=190  Identities=19%  Similarity=0.106  Sum_probs=116.1

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH--hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC--ChHHHH
Q psy12594         86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL--IEDKDLDSIISSLHDFDPDTRANAALALGGLAKD--NKHFAE  161 (542)
Q Consensus        86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~  161 (542)
                      +...++.+.+.....|..++..+.++.........+  ....++..+.+.++.+..+-+..|+.++.-++-.  ......
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            445566666677889999998888876443211111  1224677888888888776666777777766533  122234


Q ss_pred             HHHHcCChHHHHHhccCCC--HhHHHHHHHHHHHHhc---CCHHHHHHhhhCCChHHHH--Hhhc----------CCCHH
Q psy12594        162 RIVQCGALPPLVQILASPQ--LSLKHAAAFALDGIVK---HSPELAESASDCDVIPLLI--KALN----------NDEVN  224 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~i~~L~--~ll~----------~~~~~  224 (542)
                      .+.+ .+.|.|.+.+.+..  +..|..++.+|+-++.   .+++......  ..++.+.  ...+          .+++.
T Consensus       125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~  201 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAA  201 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccH
Confidence            4444 34788889888764  5566677777776544   2332222111  1122111  1111          12356


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594        225 VKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC  278 (542)
Q Consensus       225 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~  278 (542)
                      +...|+.+.+-|...-+...-.-.-...++ |..+|.+++.+||..|..+|.-|.
T Consensus       202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            888888777777765543211122245688 999999999999999999988775

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.14  E-value=0.12  Score=49.62  Aligned_cols=169  Identities=19%  Similarity=0.193  Sum_probs=111.6

Q ss_pred             CchHHHH-hhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhc-CChh
Q psy12594         41 NVVDLIV-PLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQ-QDER  117 (542)
Q Consensus        41 g~i~~L~-~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~-~~~~  117 (542)
                      +.+..|+ +.+++.++.+|..|+++|+-.+  -- .+..     ...++.+...+..++..++..|+.++..+.. +...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~--Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~   98 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCC--LLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID   98 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence            4454444 7789999999999999999998  43 2221     2246667777877899999999999999653 2222


Q ss_pred             hhh-Hh-------hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC----CCHhHHH
Q psy12594        118 CAG-LI-------EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS----PQLSLKH  185 (542)
Q Consensus       118 ~~~-~~-------~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~  185 (542)
                      ... ..       ....+..+.+.+.+.+++++..++..++.|...+.-..    ...++..|+-+.-+    ++..+|.
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ  174 (298)
T PF12719_consen   99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ  174 (298)
T ss_pred             hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence            211 11       23577888899999999999999999999874222111    01223334333333    2367777


Q ss_pred             HHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC
Q psy12594        186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNND  221 (542)
Q Consensus       186 ~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~  221 (542)
                      .-...+-..+..+++.. ..+...+++.+..+....
T Consensus       175 ~L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  175 CLSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence            77777888888666554 444466777777766643

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.00  E-value=0.32  Score=48.00  Aligned_cols=239  Identities=14%  Similarity=0.082  Sum_probs=124.4

Q ss_pred             cHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594         85 LVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAER  162 (542)
Q Consensus        85 ~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~  162 (542)
                      -+..+++-+.+ ....+|..++--|+.-+......+.+..+|.+..+++.+.+. +..+...+..++..+...+......
T Consensus        22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            45666666663 446778888777777776554444499999999999999543 3324444444444444333333444


Q ss_pred             HHHcCChHHHHHhccCC-----CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---------CCCHHHHHH
Q psy12594        163 IVQCGALPPLVQILASP-----QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN---------NDEVNVKAD  228 (542)
Q Consensus       163 i~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~  228 (542)
                      +.+.+....+++++.-.     .......-..-+.....            ..+..+...+.         .....-+..
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~------------~~~~~~~~~~~~~~~~~~~~~~~lsp~~l  169 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQ------------KSRSLCKELLSSGSSWKSPKPPELSPQTL  169 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHH------------HHHHHHHHHHhccccccccCCcccccccH
Confidence            45556667767777711     00000000001111111            01111111110         111122233


Q ss_pred             HHHHHHHHh--------------cCChhhHHHHHhhchHH-HHHhhcC----C------------ChhHHHHHHHHHHHH
Q psy12594        229 AFLCLADIA--------------KDSPSLASTIADGATTL-AVEHLTY----P------------HGLVQKNAATLLRDM  277 (542)
Q Consensus       229 a~~~L~~l~--------------~~~~~~~~~~~~~~~i~-L~~lL~~----~------------~~~v~~~a~~~L~~L  277 (542)
                      +..++-.++              ...+.+++.+...|++. ++..+.+    .            +......++.+|-+.
T Consensus       170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~  249 (361)
T PF07814_consen  170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV  249 (361)
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence            333333332              12223556677778888 8888752    1            112455677777777


Q ss_pred             hcCChHHHHHHHhc--CCHHHHHH-hhh---cCCccchHHHHHHHhHhhcCChHHHHHHHhhCc
Q psy12594        278 CKHNLRLANLVVLA--GGLDGLLR-LID---CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG  335 (542)
Q Consensus       278 ~~~~~~~~~~~~~~--~~i~~Lv~-lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  335 (542)
                      +.....+...+...  +.++.+.. ++.   ...+.....+++.+.|+..+++..+..+...++
T Consensus       250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l  313 (361)
T PF07814_consen  250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL  313 (361)
T ss_pred             HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence            76666555444432  23333222 222   223345678899999999888777766665543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2956|consensus

Probab=95.95  E-value=0.45  Score=46.80  Aligned_cols=182  Identities=14%  Similarity=0.041  Sum_probs=114.4

Q ss_pred             HHHHhhcc-CCHHHHHHHHHHHHHH-hcCChhhhhHhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594         88 LVLKDLTK-QNKHYKKTALHMLTCV-AQQDERCAGLIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIV  164 (542)
Q Consensus        88 ~Lv~~L~~-~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~  164 (542)
                      .++.-++. +..+-+..|+.-|..+ +.++.....-.-..++..+++.|.+ .+...+..|+++|..++...+.--..-.
T Consensus       290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst  369 (516)
T KOG2956|consen  290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST  369 (516)
T ss_pred             HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence            33333433 3456667777655554 4444333331222356678888887 6788999999999999975543211111


Q ss_pred             HcCChHHHHHhccCCCHhH-HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q psy12594        165 QCGALPPLVQILASPQLSL-KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL  243 (542)
Q Consensus       165 ~~g~i~~L~~ll~~~~~~~-~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  243 (542)
                      + -++..+++.-.+.+.++ +.++-.++.-++.+.|..+        |..+..++...|.+.-..++..+..+++.-. .
T Consensus       370 E-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~-~  439 (516)
T KOG2956|consen  370 E-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLS-A  439 (516)
T ss_pred             H-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC-H
Confidence            1 23556666666665544 4444456777788777433        3445556666777777777778888877642 1


Q ss_pred             HHH-HHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        244 AST-IADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       244 ~~~-~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                      -.. ..-..+.| ++.-..+.+..||..++.||..+..
T Consensus       440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            111 12257788 8888888899999999999998863

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=95.90  E-value=0.14  Score=54.90  Aligned_cols=166  Identities=15%  Similarity=0.135  Sum_probs=95.4

Q ss_pred             hHH-HHHhhcCC----ChhHHHHHHHHHHHHhcC---Ch------HHHHHHHhcCCHHHHHHhhh----cCCccchHHHH
Q psy12594        252 TTL-AVEHLTYP----HGLVQKNAATLLRDMCKH---NL------RLANLVVLAGGLDGLLRLID----CNGGYNSLPAI  313 (542)
Q Consensus       252 ~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~~---~~------~~~~~~~~~~~i~~Lv~lL~----~~~~~~~~~a~  313 (542)
                      .+. +..+++.+    ++.++..|+-+++.+...   ..      ...........++.+...+.    ..+...+..++
T Consensus       432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  511 (618)
T PF01347_consen  432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL  511 (618)
T ss_dssp             HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence            444 55555543    466777777776666421   11      00011112345666666655    34556788899


Q ss_pred             HHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC--ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC
Q psy12594        314 MALGYMSAQSEQIAEQIIELQGVGSLQTILQCP--HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV  391 (542)
Q Consensus       314 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  391 (542)
                      ++|||+...           ..++.|..++...  ....+|..|+++|..+....++..        .+.++.++.+...
T Consensus       512 kaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e  572 (618)
T PF01347_consen  512 KALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTE  572 (618)
T ss_dssp             HHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS
T ss_pred             HHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCC
Confidence            999998532           4667777777665  236899999999999977777543        3778888888777


Q ss_pred             ChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHH
Q psy12594        392 SDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAF  436 (542)
Q Consensus       392 ~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l  436 (542)
                      +.++|..|...|...--....+..+...+..+.+.+|...+-..|
T Consensus       573 ~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  573 DPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             -HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            788999998877653211122444555554234456665555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.87  E-value=0.25  Score=48.70  Aligned_cols=254  Identities=20%  Similarity=0.178  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcC-CCh-HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD-KVP-SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL   93 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s-~~~-~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L   93 (542)
                      .|...+-.|+.-+.++..+..|+..|....+++.+.+ .+. ..-..++.++.-++  .+......+.+.+....++.++
T Consensus        38 ~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~--~d~~~~~l~~~~~~~~ll~~Ll  115 (361)
T PF07814_consen   38 VRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLS--RDGLNMHLLLDRDSLRLLLKLL  115 (361)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHc--cCCcchhhhhchhHHHHHHHHh
Confidence            4666777788888899999999999999999999844 333 33333444444444  3322223333444455556666


Q ss_pred             cc--C---CHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhh------c---CCCHHHHHHHHHHHHHh-------
Q psy12594         94 TK--Q---NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL------H---DFDPDTRANAALALGGL-------  152 (542)
Q Consensus        94 ~~--~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL------~---~~~~~~~~~a~~~L~~l-------  152 (542)
                      .-  .   ...........+.+...           +.+..+...+      .   .....-+..|..++..+       
T Consensus       116 ~~~~~~~~~~~~~~~~~~~lsk~~~-----------~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~  184 (361)
T PF07814_consen  116 KVDKSLDVPSDSDSSRKKNLSKVQQ-----------KSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREA  184 (361)
T ss_pred             ccccccccccchhhhhhhhhhHHHH-----------HHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhc
Confidence            51  0   00000000000100000           0011111111      0   11112223333333333       


Q ss_pred             -------hcCChHHHHHHHHcCChHHHHHhccC----C-------C-----HhHHHHHHHHHHHHhcCCHHHHHHhhhC-
Q psy12594        153 -------AKDNKHFAERIVQCGALPPLVQILAS----P-------Q-----LSLKHAAAFALDGIVKHSPELAESASDC-  208 (542)
Q Consensus       153 -------~~~~~~~~~~i~~~g~i~~L~~ll~~----~-------~-----~~~~~~a~~~L~nl~~~~~~~~~~~~~~-  208 (542)
                             ....+.+++.+...|++..++..+.+    .       +     ......++++|.|.+..+.++....... 
T Consensus       185 ~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~  264 (361)
T PF07814_consen  185 GDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHR  264 (361)
T ss_pred             ccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhc
Confidence                   12334567778888889999888752    1       1     2345678888888887666666555432 


Q ss_pred             -CChH-HHHHhhc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-H-------HHhhcCC-------ChhHHH
Q psy12594        209 -DVIP-LLIKALN---NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-A-------VEHLTYP-------HGLVQK  268 (542)
Q Consensus       209 -~~i~-~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L-------~~lL~~~-------~~~v~~  268 (542)
                       +.++ .+..++.   .....+...+++.+.|++.++++..+.+...++.. +       ..++..+       .-+...
T Consensus       265 ~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~I  344 (361)
T PF07814_consen  265 SSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILI  344 (361)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccchHHH
Confidence             2222 2222222   23445577899999999998866554444432222 1       1112211       245666


Q ss_pred             HHHHHHHHHhcCCh
Q psy12594        269 NAATLLRDMCKHNL  282 (542)
Q Consensus       269 ~a~~~L~~L~~~~~  282 (542)
                      -++++|.||+.+++
T Consensus       345 L~Lg~LINL~E~s~  358 (361)
T PF07814_consen  345 LALGLLINLVEHSE  358 (361)
T ss_pred             HHHHhHHHheeeCc
Confidence            78888888887654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.86  E-value=0.094  Score=44.81  Aligned_cols=145  Identities=15%  Similarity=0.113  Sum_probs=99.2

Q ss_pred             hHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q psy12594        211 IPLLIKALN--NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANL  287 (542)
Q Consensus       211 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~  287 (542)
                      ++.++..+.  ...+++|..+.-++..+-   ...++ -....+-+ +-.++...+.+-...++.++..+-...|+....
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            344444444  356789999988888883   11222 22233444 556666666667888999999999888887766


Q ss_pred             HH-hcCCHHHHHHhhh--cCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhh-HHHHHHHHHHH
Q psy12594        288 VV-LAGGLDGLLRLID--CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQ-LQVAAAWTLGQ  361 (542)
Q Consensus       288 ~~-~~~~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~~  361 (542)
                      +. ..|.++.+..+..  ..+..++..++.+|..- .. .+.+...+...+++.|..+++.++++. +|..|+-.|..
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aA-c~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAA-CI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHH-TT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHH-Hc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            65 6688889999998  67777888888888643 33 344555566689999999997666555 78777766654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.85  E-value=0.017  Score=45.88  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=60.8

Q ss_pred             hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        250 GATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       250 ~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      ..++. |+.+|..+ |+.+..-||.-|+.++++.|.....+.+.|+-+.+..++.++|++++..|+.++.-+..
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            45777 99999555 88899999999999999999998878788999999999999999999999999887643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.82  E-value=0.011  Score=34.66  Aligned_cols=29  Identities=41%  Similarity=0.639  Sum_probs=25.9

Q ss_pred             hHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        169 LPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      +|.++++++++++++|..|+.+|+.++++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            78899999999999999999999999863

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.78  E-value=1.2  Score=40.97  Aligned_cols=201  Identities=13%  Similarity=0.040  Sum_probs=123.7

Q ss_pred             hHHHHH-hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594        169 LPPLVQ-ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI  247 (542)
Q Consensus       169 i~~L~~-ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  247 (542)
                      ++.|+. +-+..++.++...+.+|..++.++.....     -++..+..+...++.+.+..+...+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            344444 44556799999999999999996522222     234677777777777777778888888877664222   


Q ss_pred             HhhchHH-HHHh-----h---cCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhh-hcCCccchHHHHHH
Q psy12594        248 ADGATTL-AVEH-----L---TYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLI-DCNGGYNSLPAIMA  315 (542)
Q Consensus       248 ~~~~~i~-L~~l-----L---~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~  315 (542)
                         +.+. ++..     .   .+.  ..+.......++..+|...|+..     ...++.+..++ ++.++..+..++.+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence               2222 2222     1   111  34455555678888998887732     34567888888 67777788899999


Q ss_pred             HhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHHHhcCC
Q psy12594        316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV-DNVTALCEENVLSTLLSKITQTC  390 (542)
Q Consensus       316 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~~~  390 (542)
                      |..++...--..     ...+..+..-+..+..+.+....+..+..+..+.- ..........++..+.+...+.+
T Consensus       146 l~~Lc~~~vvd~-----~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  146 LAPLCEAEVVDF-----YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHHhhccH-----HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            999984321111     13555666666555555666655555554433322 22333455567777777777653

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.71  E-value=0.066  Score=54.77  Aligned_cols=193  Identities=12%  Similarity=0.079  Sum_probs=133.0

Q ss_pred             HHHHHHhhhc----CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH
Q psy12594        294 LDGLLRLIDC----NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN  369 (542)
Q Consensus       294 i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  369 (542)
                      .|.+.+...+    .++.++.+|..+|..+..-+.+.+.     .-+|.|+..+..++.|.+|.+|.-.++.++......
T Consensus       894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~  968 (1128)
T COG5098         894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT  968 (1128)
T ss_pred             hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence            3444444444    5677888888888877665444443     568899999997788899999999999887654332


Q ss_pred             HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-----CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCCh
Q psy12594        370 VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK-----CENPKELEQMLLGNVSEELLASILCAFAKILPCDP  444 (542)
Q Consensus       370 ~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~-----~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~  444 (542)
                      ...     .-..|.+-|.+.+  .+||+.|..++.+++-.     -|.++.+..+|. +.|..+-..+--.+..+..++.
T Consensus       969 ~de-----~t~yLyrrL~De~--~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~-deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098         969 ADE-----HTHYLYRRLGDED--ADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLT-DEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred             hHH-----HHHHHHHHhcchh--hHHHHHHHHHHHHHHHccceeeccchhhhHhhcc-CCcchHHHHHHHHHHHHHhccc
Confidence            222     2345667777764  58999999999999743     366888888998 8887777666666666655553


Q ss_pred             hhhhHHHHhcchHHhhhcC-----CCCcHHHHHHHHhccCccchhcccCccchHHHHHHHhhcCCCCc
Q psy12594        445 VARRSFVTSHCLRKVQEIE-----PTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQKS  507 (542)
Q Consensus       445 ~~~~~~~~~g~~~~l~~l~-----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  507 (542)
                      .     .-.|.++....+.     .....++.+..+..+.+.+.+.   .+..+.++-++.+-+.+.|
T Consensus      1041 t-----~yn~fidifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~---kql~E~L~~rl~rc~tq~q 1100 (1128)
T COG5098        1041 T-----MYNGFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKERHQ---KQLKESLFLRLLRCNTQSQ 1100 (1128)
T ss_pred             c-----hhhhhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHH
Confidence            3     2345666666665     2333566777777777776665   4467778888877755533

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=95.65  E-value=0.39  Score=51.01  Aligned_cols=132  Identities=18%  Similarity=0.247  Sum_probs=80.1

Q ss_pred             cHHHHHHhhcc----CCHHHHHHHHHHHHHHhc----CChhhhhHhhcCChHHHHhhhc----CCCHHHHHHHHHHHHHh
Q psy12594         85 LVALVLKDLTK----QNKHYKKTALHMLTCVAQ----QDERCAGLIEDKDLDSIISSLH----DFDPDTRANAALALGGL  152 (542)
Q Consensus        85 ~l~~Lv~~L~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~l  152 (542)
                      .+..+..++.+    ..+.++..++..++.+..    ..+.....+....++.+.+.|.    ..+.+.+...+.+|+|+
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            44556666654    346677777777666542    2221111112235555555553    34566677788889988


Q ss_pred             hcCChHHHHHHHHcCChHHHHHhcc-C--CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHH
Q psy12594        153 AKDNKHFAERIVQCGALPPLVQILA-S--PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKA  227 (542)
Q Consensus       153 ~~~~~~~~~~i~~~g~i~~L~~ll~-~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~  227 (542)
                      ....           .++.+..++. +  .+..+|..|+++|..++...++        .+-+.+.+++.+.  ++++|.
T Consensus       474 g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      474 GHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             CChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHH
Confidence            7521           2455555555 2  2478999999999999865553        2335667777643  778888


Q ss_pred             HHHHHHHH
Q psy12594        228 DAFLCLAD  235 (542)
Q Consensus       228 ~a~~~L~~  235 (542)
                      .|+.+|..
T Consensus       535 aA~~~lm~  542 (574)
T smart00638      535 AAVLVLME  542 (574)
T ss_pred             HHHHHHHh
Confidence            88777654

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.71  Score=46.52  Aligned_cols=131  Identities=18%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHh-hhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594        255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL-IDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL  333 (542)
Q Consensus       255 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  333 (542)
                      +-.++.+.|+-+|......+..--.+..       +.+++..++++ ..+.++.++.+|+.+||-+|..++         
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------  584 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------  584 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------
Confidence            3355556677777776655442221111       23566677777 677889999999999998887655         


Q ss_pred             CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594        334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC  410 (542)
Q Consensus       334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~  410 (542)
                      ..+...+++|..+.+..+|...+.+|+-.|++...+.       ++..|-.++.+.  .+-||..|+-+++-++.++
T Consensus       585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~--~dfVRQ~AmIa~~mIl~Q~  652 (926)
T COG5116         585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDT--NDFVRQSAMIAVGMILMQC  652 (926)
T ss_pred             chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCc--HHHHHHHHHHHHHHHHhhc
Confidence            3555667788777778999999999999988765422       334455566655  4569999999988876543

>KOG3665|consensus

Probab=95.57  E-value=2.2  Score=45.95  Aligned_cols=148  Identities=14%  Similarity=0.093  Sum_probs=98.6

Q ss_pred             HHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCC-hHHHHHHHhcCCCCh
Q psy12594        315 ALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENV-LSTLLSKITQTCVSD  393 (542)
Q Consensus       315 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-l~~L~~ll~~~~~~~  393 (542)
                      ++.++...+++.+..+++.++...+...+..-...+++..+...++|++...+........... ...+-..+...+ +.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~-~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWD-SI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc-hh
Confidence            7888899999999999999999999999987656789999999999997554222111111100 011112222111 11


Q ss_pred             HHHHHHHHHHHHHHhhC---------------------------------CCchh-hHHhhcCCCCHHHHHHHHHHHHhh
Q psy12594        394 NLKSKCKNALNILIPKC---------------------------------ENPKE-LEQMLLGNVSEELLASILCAFAKI  439 (542)
Q Consensus       394 ~v~~~a~~aL~nl~~~~---------------------------------~~i~~-L~~lL~~~~~~~v~~~~l~~l~~l  439 (542)
                      +.-..|+..|..++.+.                                 ..+.+ +..++..+..+.....+++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            33344444444443210                                 11233 555665244668889999999999


Q ss_pred             CCCChhhhhHHHHhcchHHhhhcC
Q psy12594        440 LPCDPVARRSFVTSHCLRKVQEIE  463 (542)
Q Consensus       440 l~~~~~~~~~~~~~g~~~~l~~l~  463 (542)
                      +...+++.+.+.+.|++..+.++-
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~  676 (699)
T KOG3665|consen  653 LEQNKEYCKLVRESNGFELIENIR  676 (699)
T ss_pred             HHcChhhhhhhHhccchhhhhhcc
Confidence            999988888899999999999886

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.46  E-value=0.18  Score=46.20  Aligned_cols=99  Identities=12%  Similarity=0.099  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q psy12594         98 KHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI  175 (542)
Q Consensus        98 ~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  175 (542)
                      ......|+.+|..++--.+..+. +.....++.++++|.. ..+.++..++.+|..+..+++.+.+.+-+.+++..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            34566688899998877777777 8889999999999954 468999999999999999999999999999999999999


Q ss_pred             ccCCC--HhHHHHHHHHHHHHhc
Q psy12594        176 LASPQ--LSLKHAAAFALDGIVK  196 (542)
Q Consensus       176 l~~~~--~~~~~~a~~~L~nl~~  196 (542)
                      +++..  .+++..++..|.-...
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHc
Confidence            99864  6777777776665443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.44  E-value=0.03  Score=32.82  Aligned_cols=29  Identities=34%  Similarity=0.638  Sum_probs=25.8

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594        211 IPLLIKALNNDEVNVKADAFLCLADIAKD  239 (542)
Q Consensus       211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  239 (542)
                      +|.+.++++++++++|..|+++|+.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1832|consensus

Probab=95.37  E-value=2  Score=45.81  Aligned_cols=375  Identities=14%  Similarity=0.083  Sum_probs=184.1

Q ss_pred             HHHHHHHHhcCCCCchHHHHhCCchHHHHhh---hcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc
Q psy12594         19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPL---LADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK   95 (542)
Q Consensus        19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~l---L~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~   95 (542)
                      ..+|+|--+-...+....+.+.|+-..++-+   -+-+|.-....+++.|+.|+  -+......+++.+++..|+..=+-
T Consensus       328 ~~~q~l~~lgey~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~--~h~kfa~~fv~~~gi~kll~vpr~  405 (1516)
T KOG1832|consen  328 YCIQCLEILGEYVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALA--AHRKFAAMFVERRGILKLLAVPRV  405 (1516)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHH--HhhHHHHHHHHhhhhHHHhcCCCc
Confidence            3566666666666666666666654333322   23345556677888888898  888888889999998887765442


Q ss_pred             CCH-HHHHHHHHHHHHHhcCChhh---hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q psy12594         96 QNK-HYKKTALHMLTCVAQQDERC---AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP  171 (542)
Q Consensus        96 ~~~-~~~~~a~~~L~~l~~~~~~~---~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  171 (542)
                      ... .-...+++.|+.+-..-+..   ..++-+.++..-+.+|......-+..+...+. ++.......+.+-....+..
T Consensus       406 s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~-~~f~frail~~fd~~d~l~~  484 (1516)
T KOG1832|consen  406 SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFA-AAFVFRAILDAFDAQDSLQK  484 (1516)
T ss_pred             hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHH-HHHHHHHHHHHHhhhhHHHH
Confidence            221 11223333333321100000   01223345666667776554333332222111 11111122223333344555


Q ss_pred             HHHhccC--------CC-----------HhHHHHHHHHHHHHhcC-----CHHHHHHhhhCCChHHHHHhhcCC------
Q psy12594        172 LVQILAS--------PQ-----------LSLKHAAAFALDGIVKH-----SPELAESASDCDVIPLLIKALNND------  221 (542)
Q Consensus       172 L~~ll~~--------~~-----------~~~~~~a~~~L~nl~~~-----~~~~~~~~~~~~~i~~L~~ll~~~------  221 (542)
                      |+.++++        .+           ...-...+.+|+.--..     -...+..-+..+..+..++-+...      
T Consensus       485 l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~  564 (1516)
T KOG1832|consen  485 LLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDI  564 (1516)
T ss_pred             HHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchh
Confidence            6655542        11           12233445555443221     111233333445555544433322      


Q ss_pred             CHHHHHHHHHHHHHHhcCChh-------hHHHHHhhchHH-HHHhhcCC--------ChhHHHHHHHHHHHHhcCChHHH
Q psy12594        222 EVNVKADAFLCLADIAKDSPS-------LASTIADGATTL-AVEHLTYP--------HGLVQKNAATLLRDMCKHNLRLA  285 (542)
Q Consensus       222 ~~~~~~~a~~~L~~l~~~~~~-------~~~~~~~~~~i~-L~~lL~~~--------~~~v~~~a~~~L~~L~~~~~~~~  285 (542)
                      ..+..+..+|-+-.+-+..+.       ..+.+...+.+. ++.+..-+        ..+....|+..|.-+..- |...
T Consensus       565 s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq  643 (1516)
T KOG1832|consen  565 SNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQ  643 (1516)
T ss_pred             hhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHH
Confidence            223455566665555544432       223444455555 66555433        245666777777666543 3333


Q ss_pred             HHHHh--------cCCHHHHHHhhhc----CCccchHHHHHHHhHhhcCChHHHHHHHh----hCchHHHHHhhcCCChh
Q psy12594        286 NLVVL--------AGGLDGLLRLIDC----NGGYNSLPAIMALGYMSAQSEQIAEQIIE----LQGVGSLQTILQCPHKE  349 (542)
Q Consensus       286 ~~~~~--------~~~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~l~~L~~ll~~~~~~  349 (542)
                      ..+..        ..++..++..-..    .+++++.+|+.+|-|++...+......+.    ..+-+.  ..+..++..
T Consensus       644 ~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r--~~l~~~~ks  721 (1516)
T KOG1832|consen  644 KALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR--IFLGAGTKS  721 (1516)
T ss_pred             HHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc--ccccCCCch
Confidence            22321        1244444433322    36779999999999998876644332221    111000  011111111


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC---ChHHHHHHHHHHHHHHhh
Q psy12594        350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV---SDNLKSKCKNALNILIPK  409 (542)
Q Consensus       350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~---~~~v~~~a~~aL~nl~~~  409 (542)
                      ...+..+.          .....+...++|..|+++|+...+   .+.+|.-|+.+|.-|.+.
T Consensus       722 ~~le~~l~----------~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~  774 (1516)
T KOG1832|consen  722 AKLEQVLR----------QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARD  774 (1516)
T ss_pred             HHHHHHHH----------HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccC
Confidence            11111111          222334456899999999985433   245899999999888654

>KOG2999|consensus

Probab=95.35  E-value=0.9  Score=45.62  Aligned_cols=153  Identities=14%  Similarity=0.163  Sum_probs=117.4

Q ss_pred             hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhhH
Q psy12594        169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE----VNVKADAFLCLADIAKDSPSLA  244 (542)
Q Consensus       169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~  244 (542)
                      ...+.+.+.+++..-+..+...|..++. ++.....++...++..|..++.+.+    .++...++.++..+-.+.....
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4456777888887778889999999988 7889999999999999999999764    4677888888888877654223


Q ss_pred             HHHHhhchHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC
Q psy12594        245 STIADGATTLAVEHLTYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ  322 (542)
Q Consensus       245 ~~~~~~~~i~L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  322 (542)
                      +.+-...+.....+....  +..+...|+..|-++...++...+.+.+.--+..|+..+...+..++..|+..+..+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            333223333344444333  677888999999999988887777788888899999999999999888888777776543

>KOG1243|consensus

Probab=95.18  E-value=0.47  Score=49.13  Aligned_cols=184  Identities=12%  Similarity=0.099  Sum_probs=128.8

Q ss_pred             hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594        122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL  201 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~  201 (542)
                      ...+++|.+++++...|..+|..-+.-+-...   +...+.+++..++|.+...+.+.++.+|+.++.++..|+.-   .
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L  400 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---L  400 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---h
Confidence            44578999999999999999876655444443   34456777888899999999999999999999999888762   2


Q ss_pred             HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH--HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        202 AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL--AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       202 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                      .........+..|.++-.+.+..+|....-+|+.++.+....   . ..+++.  ...-++++-...|..+.+.++....
T Consensus       401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---V-RKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh---h-hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence            222333444566666666677889998888888887663211   1 223333  5555666666777788877776664


Q ss_pred             CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594        280 HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY  318 (542)
Q Consensus       280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~  318 (542)
                      .-+..   -+...++|.++.+.-+++..++..|-.++..
T Consensus       477 ~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~  512 (690)
T KOG1243|consen  477 YFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQ  512 (690)
T ss_pred             ccchh---hhhhhccccccccccCcccchhhHHHHHHHH
Confidence            43322   1235778888888888888888777766543

>KOG2956|consensus

Probab=95.05  E-value=1.5  Score=43.36  Aligned_cols=175  Identities=17%  Similarity=0.220  Sum_probs=109.2

Q ss_pred             ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHh
Q psy12594         54 VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIIS  132 (542)
Q Consensus        54 ~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~  132 (542)
                      ..+-+..|+.-|..+........+++.. ..++..+++.|++ .+...+..|+++|..++...+..-.=-..-++..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence            4456667777566665222234444332 2356677888887 7889999999999999976543322111124556666


Q ss_pred             hhcCCCHHHHHHHHH-HHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCC
Q psy12594        133 SLHDFDPDTRANAAL-ALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS-PELAESASDCDV  210 (542)
Q Consensus       133 lL~~~~~~~~~~a~~-~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~  210 (542)
                      .-.+.++++...|.. |+.-++...|..        .|..+..++...+...-..++..+..++..- .+.-..++ ..+
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~di  449 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDI  449 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhh
Confidence            666666655555554 445555555442        1334445555555555556666777777632 22222333 577


Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594        211 IPLLIKALNNDEVNVKADAFLCLADIAK  238 (542)
Q Consensus       211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~  238 (542)
                      .|.+++-..+.+..+|..++.+|..+..
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            8999999999999999999999988754

>KOG2025|consensus

Probab=95.03  E-value=1.7  Score=45.24  Aligned_cols=128  Identities=13%  Similarity=0.097  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh
Q psy12594        224 NVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID  302 (542)
Q Consensus       224 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~  302 (542)
                      .+.+-++..+..+-..+.  -..++ .+.+. ++....+++..||..++..|..+.....+..+.+. .+....+..-+.
T Consensus        61 RIl~fla~fv~sl~q~d~--e~DlV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~  136 (892)
T KOG2025|consen   61 RILSFLARFVESLPQLDK--EEDLV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLK  136 (892)
T ss_pred             HHHHHHHHHHHhhhccCc--hhhHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHh
Confidence            455555555555543332  11122 25556 77777788999999999999999875444433333 366777888888


Q ss_pred             cCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHH
Q psy12594        303 CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLG  360 (542)
Q Consensus       303 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  360 (542)
                      +..+.+|..|+.+|..+-....+     -+..+...+..+++..+.++||.+|+..+.
T Consensus       137 Drep~VRiqAv~aLsrlQ~d~~d-----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  137 DREPNVRIQAVLALSRLQGDPKD-----EECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ccCchHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            89999999999999988532111     023567788899998888899988775443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.99  E-value=3.7  Score=42.14  Aligned_cols=91  Identities=12%  Similarity=0.072  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC------ChhHHHHHHHHHHHHhcCC-hHHHHHHHhcC--C
Q psy12594        224 NVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP------HGLVQKNAATLLRDMCKHN-LRLANLVVLAG--G  293 (542)
Q Consensus       224 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~------~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~--~  293 (542)
                      ++...+-.++.||++... ..      ..+. |..+|.++      +..+.+.|+..+..+..+. ......+--..  +
T Consensus       230 ~l~~~~w~~m~nL~~S~~-g~------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v  302 (464)
T PF11864_consen  230 SLCKPSWRTMRNLLKSHL-GH------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV  302 (464)
T ss_pred             ccchhHHHHHHHHHcCcc-HH------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence            667778888888887642 11      3455 77777322      4567778888888776554 22222222223  6


Q ss_pred             HHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        294 LDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       294 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      ++.+...++..++.+-...+..+.++..
T Consensus       303 l~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  303 LPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            7788888888888877777777777653

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.97  E-value=3.9  Score=41.69  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=77.9

Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC--ChHHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD--NKHFA  160 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~  160 (542)
                      .|.+..+++.+.+.+..+|..++.+|+.+...-.++......|.+..|..-+-+..+.+|.+|+.+|..+-..  ++++ 
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-  168 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-  168 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence            3567778888888999999999999999987766666666668888888888788899999999999988743  3332 


Q ss_pred             HHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhc
Q psy12594        161 ERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~  196 (542)
                            ..+..|+.+++. |+.++|+.|   |.||.-
T Consensus       169 ------~~~n~l~~~vqnDPS~EVRr~a---llni~v  196 (885)
T COG5218         169 ------RIVNLLKDIVQNDPSDEVRRLA---LLNISV  196 (885)
T ss_pred             ------HHHHHHHHHHhcCcHHHHHHHH---HHHeee
Confidence                  123456666765 457888876   455544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.95  E-value=0.77  Score=47.42  Aligned_cols=141  Identities=17%  Similarity=0.129  Sum_probs=103.6

Q ss_pred             HHHHHhccC----CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhH
Q psy12594        170 PPLVQILAS----PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLA  244 (542)
Q Consensus       170 ~~L~~ll~~----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~  244 (542)
                      |.+.....+    .+++++.+|..+|..+..-+.+.+..     -+|.|+..+. .++|.+|.+++-.++.+.-.-....
T Consensus       895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~  969 (1128)
T COG5098         895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA  969 (1128)
T ss_pred             HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence            444444444    46899999999998887655555544     3588998888 7789999999998888865443333


Q ss_pred             HHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC
Q psy12594        245 STIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS  323 (542)
Q Consensus       245 ~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  323 (542)
                      +     ..-. |..-|.+.+..|++.|..++.+|.-...-     .-.|-.+.+..+|.+++..+...|-..+..++..+
T Consensus       970 d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         970 D-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             H-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence            3     3345 78888888999999999999888643322     12477888899999999998888888888887654


Q ss_pred             hH
Q psy12594        324 EQ  325 (542)
Q Consensus       324 ~~  325 (542)
                      ..
T Consensus      1040 Nt 1041 (1128)
T COG5098        1040 NT 1041 (1128)
T ss_pred             cc
Confidence            43

>KOG2025|consensus

Probab=94.84  E-value=2.1  Score=44.54  Aligned_cols=102  Identities=16%  Similarity=0.175  Sum_probs=75.6

Q ss_pred             CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy12594        167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST  246 (542)
Q Consensus       167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  246 (542)
                      |.+..+++...+++..+|..++..|..+.....+.-+.++ .+....+..-+.+..+.+|..|+.+|+.+-....+-   
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence            4466777777888899999999999998874443333333 566778888888899999999999999998543211   


Q ss_pred             HHhhchHH-HHHhhcCC-ChhHHHHHHHHH
Q psy12594        247 IADGATTL-AVEHLTYP-HGLVQKNAATLL  274 (542)
Q Consensus       247 ~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L  274 (542)
                        +..+.. +..+++++ +++||+.+...+
T Consensus       161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  161 --ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             --cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence              124566 77777766 899999887654

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.58  E-value=2.7  Score=42.73  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      +|.+..++..+.+.|..+|..++..|..+.  ..-.-.+.....+.+..|.+-+-+..+.+|..|+.+|+.+-....+-.
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~--d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLS--DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            456667777778899999999999999998  552222334456677777777777889999999999999864321111


Q ss_pred             hHhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCC
Q psy12594        120 GLIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDN  156 (542)
Q Consensus       120 ~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~  156 (542)
                      .    .....|+..++ ++..++|..|   |.|+..++
T Consensus       168 n----~~~n~l~~~vqnDPS~EVRr~a---llni~vdn  198 (885)
T COG5218         168 N----RIVNLLKDIVQNDPSDEVRRLA---LLNISVDN  198 (885)
T ss_pred             H----HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence            1    12345556665 4557888776   45665433

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.48  E-value=0.38  Score=42.41  Aligned_cols=124  Identities=13%  Similarity=0.050  Sum_probs=82.6

Q ss_pred             cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC----------------CChHHHHHhhcC------CCHHHHHHHHHHHH
Q psy12594        177 ASPQLSLKHAAAFALDGIVKHSPELAESASDC----------------DVIPLLIKALNN------DEVNVKADAFLCLA  234 (542)
Q Consensus       177 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~----------------~~i~~L~~ll~~------~~~~~~~~a~~~L~  234 (542)
                      .+++......++..|.|++.. ...+..+++.                ..+..|+..+..      ....-....+.+|.
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            345556777888999999984 4444433321                235566666654      23445677888999


Q ss_pred             HHhcCChhhHHHHHhh--ch--HH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh--cCCHHHHHHhhh
Q psy12594        235 DIAKDSPSLASTIADG--AT--TL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVL--AGGLDGLLRLID  302 (542)
Q Consensus       235 ~l~~~~~~~~~~~~~~--~~--i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~i~~Lv~lL~  302 (542)
                      |+++.. ..++.+.+.  +.  +. |+.++.+.+..-|..++++++|+|-........+-+  .+++|.|+--|.
T Consensus        84 NlS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   84 NLSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HhcCCH-HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            999885 578877763  33  67 888888888888889999999999766555443322  244555554444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2999|consensus

Probab=94.47  E-value=0.89  Score=45.66  Aligned_cols=155  Identities=18%  Similarity=0.266  Sum_probs=113.8

Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC----HhHHHHHHHHHHHHhcCCHHH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ----LSLKHAAAFALDGIVKHSPEL  201 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~nl~~~~~~~  201 (542)
                      ....+.+.+.+++...+..+..-|..++. ++.+.+.++...++..|.+++.+..    .++...++.++..+..++- .
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence            34567788888888888889888998887 6777889999988999999998865    4566667777777666442 2


Q ss_pred             HHHhhhCCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594        202 AESASDCDVIPLLIKALN--NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC  278 (542)
Q Consensus       202 ~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~  278 (542)
                      ....+...++.....+..  ..+..+...|+..|-++...+......+.+.--+. |+..++..+..+...|...+..+.
T Consensus       162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            222222333333333332  22556778888888888888776778888888888 999999999999999888888876


Q ss_pred             cCCh
Q psy12594        279 KHNL  282 (542)
Q Consensus       279 ~~~~  282 (542)
                      ...+
T Consensus       242 ~~a~  245 (713)
T KOG2999|consen  242 RKAP  245 (713)
T ss_pred             hhCC
Confidence            6544

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=6.1  Score=41.56  Aligned_cols=275  Identities=13%  Similarity=0.040  Sum_probs=154.2

Q ss_pred             CChHHHHhhhcCC--------CHHHHHHHHHHHHHhhc--CChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594        125 KDLDSIISSLHDF--------DPDTRANAALALGGLAK--DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI  194 (542)
Q Consensus       125 g~v~~Lv~lL~~~--------~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl  194 (542)
                      |.++.+...|...        ++.-.+.|++.++++..  ..+.....+.+.=+++.++-.++++.--++..|+..+..+
T Consensus       408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~  487 (970)
T COG5656         408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI  487 (970)
T ss_pred             hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence            6777788777321        24445667777777764  3333344455555677888888888888999999999988


Q ss_pred             hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHHhhcCCChhHHHHHH
Q psy12594        195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVEHLTYPHGLVQKNAA  271 (542)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~lL~~~~~~v~~~a~  271 (542)
                      ..+   .....+-..+.+....++++.+..++-.|+-|+..+..+.. ....+..  .+.++ |+.+-..-+.++...+.
T Consensus       488 eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sahVp~tmekLLsLSn~feiD~LS~vM  563 (970)
T COG5656         488 EED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM  563 (970)
T ss_pred             HHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence            542   22222224455677788888888999999999999887762 4343333  24444 55554444556555555


Q ss_pred             HHHHH-H----hcCChHHHHHHHhcCCHHHHHHhhhcCCc------cchHHHHHHHhHhhc-----CChHHHHHHHhhCc
Q psy12594        272 TLLRD-M----CKHNLRLANLVVLAGGLDGLLRLIDCNGG------YNSLPAIMALGYMSA-----QSEQIAEQIIELQG  335 (542)
Q Consensus       272 ~~L~~-L----~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~------~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~  335 (542)
                      ..+.. .    +...++.+..+++ ..+.....++..+++      +-+.+|...|..+..     .+....-.-.+...
T Consensus       564 e~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl  642 (970)
T COG5656         564 ESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL  642 (970)
T ss_pred             HHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            44432 2    2222333332222 222222233332211      234445554444321     22222222233355


Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        336 VGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       336 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      .|.+--++.+.. .+.-.+|+..+-+.+-...+.-.  +--|+.+.+.+++.++.. ...-.+++-++.|++.
T Consensus       643 ypvi~Filkn~i-~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t-~~y~ee~~~al~nfit  711 (970)
T COG5656         643 YPVISFILKNEI-SDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEIT-AVYSEEVADALDNFIT  711 (970)
T ss_pred             HHHHHHHHhhhH-HHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccch-hhhHHHHHHHHHHHHH
Confidence            565555566543 45666777777666433322111  112566777777776642 3566788889999963

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.39  E-value=0.26  Score=35.50  Aligned_cols=66  Identities=18%  Similarity=0.211  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCC
Q psy12594        142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCD  209 (542)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~  209 (542)
                      .+.++|++++++..... ...+.+.++++.++++....+ ..+|-.|..+|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G-~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLG-IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHH-HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            46789999999984443 466667799999999998654 8899999999999988 677776665544

>KOG2611|consensus

Probab=94.37  E-value=6  Score=39.35  Aligned_cols=228  Identities=10%  Similarity=0.074  Sum_probs=130.6

Q ss_pred             HHHhccCCCHhHHHHHHHHHHHHhcCC---HHHHHHhhhCCChHHHHHhhcCC-------CHHHHHHHHHHHHHHhcCCh
Q psy12594        172 LVQILASPQLSLKHAAAFALDGIVKHS---PELAESASDCDVIPLLIKALNND-------EVNVKADAFLCLADIAKDSP  241 (542)
Q Consensus       172 L~~ll~~~~~~~~~~a~~~L~nl~~~~---~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~  241 (542)
                      +..+.+..+.+-|.+|+.....++.++   ...++.+++.=+.+.+-+++...       +.-.+.-++..|..+|+..+
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            556666666777888888888888754   34556677787888888888743       33367778888999998753


Q ss_pred             hhHH--HHHhhchHH-HHHhhcCC-Chh------HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchH-
Q psy12594        242 SLAS--TIADGATTL-AVEHLTYP-HGL------VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL-  310 (542)
Q Consensus       242 ~~~~--~~~~~~~i~-L~~lL~~~-~~~------v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~-  310 (542)
                       ...  .++  .-+| |...+... |++      +...+..||..++.+ +.....++..|+++.+.+.-..++...-. 
T Consensus        96 -lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a  171 (698)
T KOG2611|consen   96 -LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMA  171 (698)
T ss_pred             -hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence             332  233  4577 88888765 444      788899999999977 44455577889999999876665544222 


Q ss_pred             HHHHHHhHhhcCC---hHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh------HHHHHHHHcCChHH
Q psy12594        311 PAIMALGYMSAQS---EQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV------DNVTALCEENVLST  381 (542)
Q Consensus       311 ~a~~~L~~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~l~~  381 (542)
                      -++..+.-.....   ++-...+.  .++..+..=+... +...+.+.|+.|..+....+      ..+...+-.....-
T Consensus       172 lal~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G  248 (698)
T KOG2611|consen  172 LALKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG  248 (698)
T ss_pred             HHHHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence            2332222222111   01111111  1122232223332 23678888888886543221      11111222223344


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        382 LLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       382 L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      +..+|.+.- .+.-|.-|.....|+.
T Consensus       249 ~~~IL~~kv-~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  249 VVAILQNKV-APSQRLPALILAANMM  273 (698)
T ss_pred             HHHHHhccc-CchhcChHHHHHHHHH
Confidence            455565432 2344445555555553

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.14  E-value=0.37  Score=34.71  Aligned_cols=66  Identities=17%  Similarity=0.134  Sum_probs=51.2

Q ss_pred             hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy12594        309 SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEE  376 (542)
Q Consensus       309 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  376 (542)
                      .+.+++++++++.. +.....+.+.++++.++++..+.+...+|--+.++|+-+ +.+.+-...+-+.
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lgli-s~T~~G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLI-SSTEEGAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHH-hCCHHHHHHHHHc
Confidence            56899999999764 455556667799999999999887788999999999888 4555555544443

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.04  E-value=4.8  Score=36.98  Aligned_cols=201  Identities=18%  Similarity=0.135  Sum_probs=118.5

Q ss_pred             HHHHHHhhc-cCCHHHHHHHHHHHHHHhcCC-hhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594         86 VALVLKDLT-KQNKHYKKTALHMLTCVAQQD-ERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI  163 (542)
Q Consensus        86 l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  163 (542)
                      ++.++.-+. ..++..+...+..|..++.++ .....     ++..+..+...+..+.+..+.+.+..+-..++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            345555344 578999999999999999877 22222     35566667766666665566666666665444321   


Q ss_pred             HHcCChHHHHHh--------ccC--CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh-cCCCHHHHHHHHHH
Q psy12594        164 VQCGALPPLVQI--------LAS--PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL-NNDEVNVKADAFLC  232 (542)
Q Consensus       164 ~~~g~i~~L~~l--------l~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~  232 (542)
                         +.+..++..        ..+  ...+.....+.++..+|...|+.-     ...++.+..++ ++.++..+..++.+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence               223333332        111  125566666778899998777633     23458888888 77888899999999


Q ss_pred             HHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHH-HHHHHhcCCHHHHHHhhhcCCcc
Q psy12594        233 LADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRL-ANLVVLAGGLDGLLRLIDCNGGY  307 (542)
Q Consensus       233 L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~~~~~~  307 (542)
                      +..+|...  ..+.   ..... +..-+..+ .+.+....+..+..+....-+. ........++..+-++..+.+.+
T Consensus       146 l~~Lc~~~--vvd~---~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~  218 (234)
T PF12530_consen  146 LAPLCEAE--VVDF---YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN  218 (234)
T ss_pred             HHHHHHHh--hccH---HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence            99999442  2221   12334 44444444 5677766666555554333111 11122345555666666655543

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.01  E-value=0.44  Score=47.90  Aligned_cols=120  Identities=16%  Similarity=0.188  Sum_probs=78.0

Q ss_pred             CCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHH
Q psy12594        208 CDVIPLLIKA-LNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRL  284 (542)
Q Consensus       208 ~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~  284 (542)
                      .+++..++.. .++.+.++|+.|+-+|+-+|-.++         ..++ .+.+|..+ +..||...+.+|.-.|.+.-..
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~  620 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK  620 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence            3456666666 567788999999999998887765         4455 67777766 8889888888888777665433


Q ss_pred             HHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc-CChHHHHHHHhhCchHHHHHhhcC
Q psy12594        285 ANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA-QSEQIAEQIIELQGVGSLQTILQC  345 (542)
Q Consensus       285 ~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~  345 (542)
                      ..       ++.|-.+..+.+.-+|..|+-+++-+.. ++++..-.+  .++.+.+.+++..
T Consensus       621 ~a-------~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~  673 (926)
T COG5116         621 VA-------TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVD  673 (926)
T ss_pred             HH-------HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhh
Confidence            22       2344556666777788888888887654 333322111  1344455555544

>KOG1820|consensus

Probab=93.87  E-value=1.1  Score=48.52  Aligned_cols=189  Identities=16%  Similarity=0.166  Sum_probs=128.4

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh-ccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL-TKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      .-+.+-.-+.+.+..-|..|+..+....  ........-...+.+-.+++.. .+.|..+...++.+|..++........
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l--~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAIL--EEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHH--hccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            3445566667888899999998888888  4422111111233444444443 357788899999999999876544433


Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH-
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP-  199 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~-  199 (542)
                      -...++.+.++..+.+..+.++..+..++-.++...+.       ..+.+.+...+++.++..+..+...+........ 
T Consensus       332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence            33447888999999888888888888877777653222       1346778889999999999887776665554322 


Q ss_pred             HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594        200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD  239 (542)
Q Consensus       200 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  239 (542)
                      .....-.-.+.+|.++....+.+.++|..+..+++.+.+.
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            1111111145678888888899999999999999877654

>KOG1949|consensus

Probab=93.75  E-value=2  Score=44.57  Aligned_cols=146  Identities=15%  Similarity=0.124  Sum_probs=95.8

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhHccCChHH----HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDI----RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~----~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      |.|..-|+-.+..||..|+..+.++.--.+++.    .+.+++. -...+.++|+++-+.+|..|..-+..+.+   ...
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW  252 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITS---KFW  252 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence            667778888999999999999999884444332    2333332 34578889999999999998877666542   112


Q ss_pred             hHhhc----CChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594        120 GLIED----KDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI  194 (542)
Q Consensus       120 ~~~~~----g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl  194 (542)
                      .++-.    .++..+..-+. +...++|......|..+.. +|. ...+.+.+ +|.+-..|.+....+|.++...|..|
T Consensus       253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~-sh~~le~~-Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPL-SHPLLEQL-LPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Ccc-chhHHHHH-HHhcchhhhccchhHHHHHHHHHHHH
Confidence            22211    22333333333 3347888888888888875 443 23344443 66777777888888999888888766


Q ss_pred             hc
Q psy12594        195 VK  196 (542)
Q Consensus       195 ~~  196 (542)
                      -.
T Consensus       330 k~  331 (1005)
T KOG1949|consen  330 KA  331 (1005)
T ss_pred             Hh
Confidence            54

>KOG1788|consensus

Probab=93.48  E-value=2.2  Score=46.32  Aligned_cols=276  Identities=13%  Similarity=0.093  Sum_probs=159.2

Q ss_pred             ccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC--ChhhHHHHHhhchH
Q psy12594        176 LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD--SPSLASTIADGATT  253 (542)
Q Consensus       176 l~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i  253 (542)
                      |+.++.+++...+..+..|-..++++....-+...+|.++.-+......++...+..|-.-...  ....+      ..+
T Consensus       476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeq------ELl  549 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQ------ELL  549 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHH------HHH
Confidence            4566778888888888888888888888877788899998888877666666666555332111  11122      334


Q ss_pred             HHHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCcc---chHHHHHHHhHhhcCChHHHHH
Q psy12594        254 LAVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY---NSLPAIMALGYMSAQSEQIAEQ  329 (542)
Q Consensus       254 ~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~---~~~~a~~~L~~l~~~~~~~~~~  329 (542)
                      .|.-+|+.+ +..++...+.....|..-+....+.+.+.|+++.|..-++...--   -+..++.-...=--.++...+.
T Consensus       550 SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~  629 (2799)
T KOG1788|consen  550 SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQH  629 (2799)
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhc
Confidence            466677777 666777777777777766777777788889988888776652110   0111111110000011111111


Q ss_pred             HHhhCchHHHHHhhcCCCh-hhHHH------HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHH
Q psy12594        330 IIELQGVGSLQTILQCPHK-EQLQV------AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNA  402 (542)
Q Consensus       330 ~~~~~~l~~L~~ll~~~~~-~~v~~------~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~a  402 (542)
                      +-....+-.--.+..+++. ..+.+      ...-+|..+..++.++.+.+.+.+++..++..+.+.    +-|......
T Consensus       630 ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflind----ehRSslLri  705 (2799)
T KOG1788|consen  630 LDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRI  705 (2799)
T ss_pred             cccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHH
Confidence            1111111111122222111 11111      112345566677778888888888777777777543    566666666


Q ss_pred             HHHHHhhC-C-----CchhhHHhhcCC---C---------CHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhc
Q psy12594        403 LNILIPKC-E-----NPKELEQMLLGN---V---------SEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI  462 (542)
Q Consensus       403 L~nl~~~~-~-----~i~~L~~lL~~~---~---------~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l  462 (542)
                      +..++... .     .+-.+++.|+ +   +         ........++++..+.-.+...++.|.+.+|+-.+...
T Consensus       706 vscLitvdpkqvhhqelmalVdtLk-sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLltt  782 (2799)
T KOG1788|consen  706 VSCLITVDPKQVHHQELMALVDTLK-SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTT  782 (2799)
T ss_pred             HHHHhccCcccccHHHHHHHHHHHH-hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHH
Confidence            66664321 1     2345556665 3   1         12456677888888876666777888898888776554

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.47  E-value=8.4  Score=45.91  Aligned_cols=286  Identities=12%  Similarity=0.068  Sum_probs=154.3

Q ss_pred             CCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChH
Q psy12594         52 DKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD  128 (542)
Q Consensus        52 s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~  128 (542)
                      +.+..+...|+..|+.++...-  ++....-.....+.++..++.+ .+.+++...+.++.++.....   .-+. .+++
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nIk-SGWk 1223 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNVK-SGWK 1223 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhhh-cCcH
Confidence            3456788899999999983222  3321111234567788777764 668999999999998764321   1122 3677


Q ss_pred             HHHhhhc----CCCHHHHHHHHHHHHHhhcCChHHHHHHHH--c----CChHHHHHhccCC-CHhHHHHHHHHHHHHhcC
Q psy12594        129 SIISSLH----DFDPDTRANAALALGGLAKDNKHFAERIVQ--C----GALPPLVQILASP-QLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       129 ~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~----g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~  197 (542)
                      .+..++.    +.++.+...|..++..+..+.-   ..+..  .    .+|..|..+.... +.++-..|+..|.+++..
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            7777765    4457777777777777664211   11110  1    2233444444332 344555566666654210


Q ss_pred             CHH---------------------------HHHHhhh-----CCChHHH---HHhhcCCCHHHHHHHHHHHHHHhcCC--
Q psy12594        198 SPE---------------------------LAESASD-----CDVIPLL---IKALNNDEVNVKADAFLCLADIAKDS--  240 (542)
Q Consensus       198 ~~~---------------------------~~~~~~~-----~~~i~~L---~~ll~~~~~~~~~~a~~~L~~l~~~~--  240 (542)
                      -.+                           ....+.+     ...+|.|   ..+..+..++||..|+..|..+-...  
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence            000                           0000000     1123333   34455778999999999998876432  


Q ss_pred             ---hhhHHHHHhhchHHHHHhhcCC-----------------------ChhHHHHHHHHHHHHhcCChHHHHHH--HhcC
Q psy12594        241 ---PSLASTIADGATTLAVEHLTYP-----------------------HGLVQKNAATLLRDMCKHNLRLANLV--VLAG  292 (542)
Q Consensus       241 ---~~~~~~~~~~~~i~L~~lL~~~-----------------------~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~  292 (542)
                         ++....+...-+.|+++.++..                       +.++...+..+|.+++.--...-..+  .-.+
T Consensus      1381 ~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~ 1460 (1780)
T PLN03076       1381 LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKK 1460 (1780)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2344555553333465554311                       12345556666666653322221111  1124


Q ss_pred             CHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHH-HHHHhhCchHHHHHhhcC
Q psy12594        293 GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA-EQIIELQGVGSLQTILQC  345 (542)
Q Consensus       293 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll~~  345 (542)
                      .+..|..++..++..+...+..+|.+|...+.... ...+ ..++..+.+++..
T Consensus      1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W-~~i~~~~~~lf~~ 1513 (1780)
T PLN03076       1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKW-LEVVLSLKEAANA 1513 (1780)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHH-HHHHHHHHHHHHH
Confidence            55556666677888888888888888876443322 2222 2455566666655

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.45  E-value=0.74  Score=40.59  Aligned_cols=109  Identities=14%  Similarity=0.113  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhh----------------cCChHHHHhhhcC------CCHHHHHHHHHHHHHhh
Q psy12594         96 QNKHYKKTALHMLTCVAQQDERCAGLIE----------------DKDLDSIISSLHD------FDPDTRANAALALGGLA  153 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~l~  153 (542)
                      ++......++.+|.|++..+.....+.+                ...+..|+..+..      ....-....+.++.|++
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            3344555666777777766544443211                1256666666654      12344566778899999


Q ss_pred             cCChHHHHHHHHc--CC--hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594        154 KDNKHFAERIVQC--GA--LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS  206 (542)
Q Consensus       154 ~~~~~~~~~i~~~--g~--i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~  206 (542)
                      . .++.|+.+.+.  +.  +..|+.++...+..-|.-++.+|.|+|.+. +....+.
T Consensus        87 ~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~-~~H~~LL  141 (192)
T PF04063_consen   87 Q-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT-DSHEWLL  141 (192)
T ss_pred             C-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH-hHHHHhc
Confidence            8 66778888866  34  777888888888778889999999999954 3444444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG0891|consensus

Probab=93.35  E-value=4.4  Score=49.14  Aligned_cols=270  Identities=17%  Similarity=0.216  Sum_probs=150.8

Q ss_pred             HhhccCCHHHHHHHHHHHHHHhcCChhhhhHh------hcCChHHHHhh-hcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594         91 KDLTKQNKHYKKTALHMLTCVAQQDERCAGLI------EDKDLDSIISS-LHDFDPDTRANAALALGGLAKDNKHFAERI  163 (542)
Q Consensus        91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  163 (542)
                      ..+...+++++..+...+..+........+..      ....+..+..+ +.++++.++......+.      ..+-...
T Consensus       488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~l  561 (2341)
T KOG0891|consen  488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQL  561 (2341)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhh
Confidence            34566889999998777666554432211111      11112222222 23455666655444333      2222334


Q ss_pred             HHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q psy12594        164 VQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL  243 (542)
Q Consensus       164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  243 (542)
                      .+.+.+..+...+.++.-..+..+...+++++..+|...-.......+..+.++..+.-..+...+..-+..+....+..
T Consensus       562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence            44455666777778888889999999999999987744333332333333333333333333333333333332222222


Q ss_pred             HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc-CCccchHHHHHHHhHhhc
Q psy12594        244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC-NGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~  321 (542)
                      ..... ...+. ++..+.+.+..+...+..++..||.-.-+......+ ..++.+.+.+.. .+...+.++.++++++..
T Consensus       642 i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  642 ISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             HHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence            22222 24445 778888888888888888888888654433322233 344444444443 444577889999999976


Q ss_pred             CChHHHHHHH-hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH
Q psy12594        322 QSEQIAEQII-ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD  368 (542)
Q Consensus       322 ~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  368 (542)
                      ...-...... ...++..+...+..+....++..+...++++...++.
T Consensus       720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~  767 (2341)
T KOG0891|consen  720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY  767 (2341)
T ss_pred             ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence            5333222221 2246667777777766678899999999988765543

>KOG1788|consensus

Probab=93.06  E-value=12  Score=41.10  Aligned_cols=239  Identities=14%  Similarity=0.061  Sum_probs=133.8

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc---CCHHHHHHhhhCCCh
Q psy12594        135 HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK---HSPELAESASDCDVI  211 (542)
Q Consensus       135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~i  211 (542)
                      +.++.+.+...+..+..+-...+++-...-+.--+|.++.-+......+|...+.+|.--..   +-|+ ++       +
T Consensus       477 kaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPe-qE-------L  548 (2799)
T KOG1788|consen  477 KAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPE-QE-------L  548 (2799)
T ss_pred             HhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcH-HH-------H
Confidence            45566677777777777777677776666666778888888877666666665555432211   0111 11       1


Q ss_pred             HHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC------CC---------------h----
Q psy12594        212 PLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY------PH---------------G----  264 (542)
Q Consensus       212 ~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~------~~---------------~----  264 (542)
                      -.|+-+|+.+ ...+....+..+..|...+..+++.+.+-|+++ |...++.      +|               +    
T Consensus       549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~  628 (2799)
T KOG1788|consen  549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQ  628 (2799)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhh
Confidence            1244445433 334444445555555555545555666666666 5544422      00               0    


Q ss_pred             ----------------------hHHH------HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHH
Q psy12594        265 ----------------------LVQK------NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL  316 (542)
Q Consensus       265 ----------------------~v~~------~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L  316 (542)
                                            .+..      ....+|..+.+++.++.+.+.+..++..++.++  -++..|..-++++
T Consensus       629 ~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRSslLriv  706 (2799)
T KOG1788|consen  629 HLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIV  706 (2799)
T ss_pred             ccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHH
Confidence                                  0111      224566777777778877777777777777766  3445566677777


Q ss_pred             hHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-----------hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHH
Q psy12594        317 GYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-----------EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSK  385 (542)
Q Consensus       317 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~l  385 (542)
                      ..|...++.+..    ++-+-.+++.|+++-.           .......+.+++.+..-+...+..+-+++++..|...
T Consensus       707 scLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLltt  782 (2799)
T KOG1788|consen  707 SCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTT  782 (2799)
T ss_pred             HHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHH
Confidence            777665554321    1223344555554211           1234455666667654455555566677777776665


Q ss_pred             Hh
Q psy12594        386 IT  387 (542)
Q Consensus       386 l~  387 (542)
                      |.
T Consensus       783 Lh  784 (2799)
T KOG1788|consen  783 LH  784 (2799)
T ss_pred             HH
Confidence            54

>KOG1820|consensus

Probab=93.03  E-value=3.5  Score=44.82  Aligned_cols=180  Identities=17%  Similarity=0.172  Sum_probs=120.8

Q ss_pred             HhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy12594         91 KDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSL-HDFDPDTRANAALALGGLAKDNKHFAERIVQCGA  168 (542)
Q Consensus        91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~  168 (542)
                      .-+.+.+..-|..++.-+........ ... ....|.+..++... .+.+..+-..++.+|..++......... ...++
T Consensus       260 t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v  337 (815)
T KOG1820|consen  260 TEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNV  337 (815)
T ss_pred             HhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhh
Confidence            34556777888888888888765543 111 11223344444433 3556777888888888888544332111 22356


Q ss_pred             hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHH
Q psy12594        169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTI  247 (542)
Q Consensus       169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~  247 (542)
                      .|.++..+.+....++..+..++..++...+.       ....+.+...+.+.++.++..+...+........ .....-
T Consensus       338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~  410 (815)
T KOG1820|consen  338 FPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE  410 (815)
T ss_pred             cchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence            88899999988888888887777776653321       3345788899999999999997777776655433 222222


Q ss_pred             HhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        248 ADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       248 ~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                      .-...++ ++....+.+.+||..+..++..+-+
T Consensus       411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            2346788 8888889999999999999887764

>KOG2137|consensus

Probab=92.70  E-value=4.2  Score=42.57  Aligned_cols=134  Identities=17%  Similarity=0.152  Sum_probs=90.0

Q ss_pred             hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594        122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSPE  200 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~~  200 (542)
                      +...++|.|...+++.+..+++.++..+..++..-+   -..++.-++|.+-.+. +..+..++..++.|+..+..    
T Consensus       386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----  458 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----  458 (700)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----
Confidence            345678889999999999999999998888875322   2333444567666653 44568999999999999884    


Q ss_pred             HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCC
Q psy12594        201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPH  263 (542)
Q Consensus       201 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~  263 (542)
                      ..+...-...+..+.+..+..++.+....+.+..++.-....- ..+....++| ++.+...+.
T Consensus       459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            1221111233455556666778898888888888777654322 3445567888 777666653

>KOG1992|consensus

Probab=92.57  E-value=17  Score=38.94  Aligned_cols=375  Identities=13%  Similarity=0.059  Sum_probs=184.9

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHH----HHHHHh--cCChhh
Q psy12594         45 LIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALH----MLTCVA--QQDERC  118 (542)
Q Consensus        45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~----~L~~l~--~~~~~~  118 (542)
                      .+++++-+....+|.+--.+|.-++....|+.+.     ..++.|+..+++.+-.+-...+.    ++.+.-  ..++..
T Consensus        92 lIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWp-----tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL  166 (960)
T KOG1992|consen   92 LIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWP-----TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDAL  166 (960)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHhccccchhhH-----HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHH
Confidence            5667777888889999899999998322366533     46777888777655433333222    222221  111111


Q ss_pred             hh-Hh--hcCChHHHHhhhc---------CCCHH-------HHHHHHHHHHHhh-cCChHHHHHHHHcCChHHHHHhccC
Q psy12594        119 AG-LI--EDKDLDSIISSLH---------DFDPD-------TRANAALALGGLA-KDNKHFAERIVQCGALPPLVQILAS  178 (542)
Q Consensus       119 ~~-~~--~~g~v~~Lv~lL~---------~~~~~-------~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~  178 (542)
                      -. +.  -...-.++..++.         ..|..       +....+.....+. .+-|++.+.-.+.+ ++.+.+++..
T Consensus       167 ~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~w-M~~F~k~l~~  245 (960)
T KOG1992|consen  167 WLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTW-MGAFHKLLTY  245 (960)
T ss_pred             HHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHH-HHHHHHHHhc
Confidence            11 10  0011123333332         11211       1122223333333 23344444444433 6677777763


Q ss_pred             CC-------------HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCC
Q psy12594        179 PQ-------------LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND-----EVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       179 ~~-------------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~  240 (542)
                      ++             ..++...+..+.--+...++....++ ..++.....++.+.     -+.+...|...|.++++..
T Consensus       246 ~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl-~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~  324 (960)
T KOG1992|consen  246 DNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFL-PDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRP  324 (960)
T ss_pred             cCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhh
Confidence            22             23444555554444443444443333 33344444555432     2346777788888887764


Q ss_pred             hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccc-hHHHHHHHhH
Q psy12594        241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYN-SLPAIMALGY  318 (542)
Q Consensus       241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~~~a~~~L~~  318 (542)
                       .....+...+++. +.+...-+             |++...  ..+.+.+...++.+-+-+...|... |..|+..++.
T Consensus       325 -~y~~~F~~~~vl~~i~e~Vvlp-------------N~~lR~--eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg  388 (960)
T KOG1992|consen  325 -HYAELFEGENVLAQICEKVVLP-------------NLILRE--EDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG  388 (960)
T ss_pred             -hhHhhhcchHHHHHHHHhhccc-------------ccccch--hhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Confidence             4555555555555 55444333             222211  1123556677778888888887764 5567778888


Q ss_pred             hhcCChHHHHHHHhhCchHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHH------------HHcCChHHHHHH
Q psy12594        319 MSAQSEQIAEQIIELQGVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTAL------------CEENVLSTLLSK  385 (542)
Q Consensus       319 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l------------~~~~~l~~L~~l  385 (542)
                      |+...+.....++...+-..|-+....++. ..-+..+.+....++........-+            ....++|.|.+-
T Consensus       389 L~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~  468 (960)
T KOG1992|consen  389 LCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSP  468 (960)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccC
Confidence            988776665555554333333344444332 2233444455555543322222211            111222222110


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHhh------CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594        386 ITQTCVSDNLKSKCKNALNILIPK------CENPKELEQMLLGNVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       386 l~~~~~~~~v~~~a~~aL~nl~~~------~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                        +....+-+|..+..-+.-+-.+      ...+|.+.+.|+ ....-+=.++..++.+++...++
T Consensus       469 --~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~-a~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  469 --NVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLE-AESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             --ccccccchhhcccceeeeecccCChHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHhccccccC
Confidence              1111223443332221111001      123677777777 66666777888888888876655

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=92.51  E-value=9.2  Score=35.76  Aligned_cols=216  Identities=16%  Similarity=0.147  Sum_probs=118.8

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594         45 LIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVAQQDERCAGLI  122 (542)
Q Consensus        45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~  122 (542)
                      .|-..|.++|+.+|..|+..|..+...-.++.    ....-+..|++++.+  .+......++..+..+.....-.... 
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-   77 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-   77 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence            45677899999999999999999882222221    122234455555432  44444444466666665332110000 


Q ss_pred             hcCChHHHHhhhc--CCCHHHHHHHHHHHHHhhcCChHHHHHHH--HcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcC
Q psy12594        123 EDKDLDSIISSLH--DFDPDTRANAALALGGLAKDNKHFAERIV--QCGALPPLVQILASP-QLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       123 ~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~  197 (542)
                      ....+..+.+-..  +.....|..+...+..+.....   ..+.  ..+.+..+++.+..+ ||.....+...+..+...
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~  154 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE  154 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            0112222222221  1225677778888887775332   2222  234577788888765 587777777777766653


Q ss_pred             CHHHHHHhhhCCChHHHHHhhc---------CC-CH--HHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCCh
Q psy12594        198 SPELAESASDCDVIPLLIKALN---------ND-EV--NVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHG  264 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~---------~~-~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~  264 (542)
                      -+      . ....+-+...+.         .+ ++  =.++.-..+|.+.-...+.+..     -.+| |++-|.++.+
T Consensus       155 ~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~  222 (262)
T PF14500_consen  155 FD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSP  222 (262)
T ss_pred             cc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCc
Confidence            22      1 222333333332         11 21  1233333333333333333333     5788 9999999999


Q ss_pred             hHHHHHHHHHHHHhcC
Q psy12594        265 LVQKNAATLLRDMCKH  280 (542)
Q Consensus       265 ~v~~~a~~~L~~L~~~  280 (542)
                      .++..++.+|...+..
T Consensus       223 ~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  223 SVKLDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887653

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=92.46  E-value=3.9  Score=41.13  Aligned_cols=235  Identities=11%  Similarity=0.112  Sum_probs=131.5

Q ss_pred             hHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHH
Q psy12594         34 IHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCV  111 (542)
Q Consensus        34 ~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l  111 (542)
                      .....+...+..|+.++.|+|+..|......|.++-  .. ...+..+ .......+.+.+.. ....-....+.+++.+
T Consensus       126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy--~k~~~~r~~I-r~~i~~~~~~fi~e~~~~~gI~elLeil~si  202 (409)
T PF01603_consen  126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIY--GKFPNLRSFI-RKSINNIFYRFIYETERHNGIAELLEILGSI  202 (409)
T ss_dssp             CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHH--HH-TTTHHHH-HHHHHHHHHHHHHTTS--STHHHHHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HHhhhhHHHH-HHHHHHHHHHHhcCcccccCHHHHHHHHHHH
Confidence            445666778888999999999999999998888877  32 2222222 22333455555553 3344556667777777


Q ss_pred             hcCC-----hhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHH
Q psy12594        112 AQQD-----ERCAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKH  185 (542)
Q Consensus       112 ~~~~-----~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~  185 (542)
                      ..+-     ++...+.    ...++.+.+... ......-..++..+...++.....+     +..+++.=-..++.=+.
T Consensus       203 i~gf~~plk~eh~~fl----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev  273 (409)
T PF01603_consen  203 INGFAVPLKEEHKQFL----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEV  273 (409)
T ss_dssp             HTT--SS--HHHHHHH----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHH
T ss_pred             HhccCCCCcHHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHH
Confidence            6541     2222222    234455555544 2333444555666665555543333     33344444444444444


Q ss_pred             HHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHHhhcC-
Q psy12594        186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVEHLTY-  261 (542)
Q Consensus       186 ~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~lL~~-  261 (542)
                      .-+.-+..+...-+.....-+.......+...+.+.+..|.+.|+..+.|     +.....+.+  ..++| +..-|.. 
T Consensus       274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i~p~i~~~L~~~  348 (409)
T PF01603_consen  274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVILPIIFPALYRN  348 (409)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHHHHHHHHHHSST
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHHHHHHHHHHHHH
Confidence            44445555555332222222223455777888889999998888765432     223333322  34666 6666543 


Q ss_pred             ---C-ChhHHHHHHHHHHHHhcCChHHH
Q psy12594        262 ---P-HGLVQKNAATLLRDMCKHNLRLA  285 (542)
Q Consensus       262 ---~-~~~v~~~a~~~L~~L~~~~~~~~  285 (542)
                         . +..++..+..++..+..-++..-
T Consensus       349 ~~~HWn~~Vr~~a~~vl~~l~~~d~~lf  376 (409)
T PF01603_consen  349 SKNHWNQTVRNLAQNVLKILMEMDPKLF  376 (409)
T ss_dssp             TSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence               2 78999999999999987776543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG4464|consensus

Probab=92.37  E-value=12  Score=36.64  Aligned_cols=137  Identities=16%  Similarity=0.189  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhc---C-------CChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCc
Q psy12594         17 RLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA---D-------KVPSIQHAALATLGKLMCAKH-VDIRQEVLERNL   85 (542)
Q Consensus        17 r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~---s-------~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~   85 (542)
                      |...++++.-++.++..-+.+....-+..|..+-+   .       .|-.+...++++|+++.  .+ ...+....+...
T Consensus        63 ~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv--f~Sq~~q~~~~~~~~  140 (532)
T KOG4464|consen   63 RVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV--FHSQRAQDLFLENPL  140 (532)
T ss_pred             hhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH--hccHHHHHHHHhhhh
Confidence            44556777777776666555544444444444421   1       23378889999999999  77 778888888777


Q ss_pred             HHHHHHhhccC-----CHHHHHHHHHHHHHHhcCChhhhh--HhhcCChHHHHhhhcCC---------C---H---HHHH
Q psy12594         86 VALVLKDLTKQ-----NKHYKKTALHMLTCVAQQDERCAG--LIEDKDLDSIISSLHDF---------D---P---DTRA  143 (542)
Q Consensus        86 l~~Lv~~L~~~-----~~~~~~~a~~~L~~l~~~~~~~~~--~~~~g~v~~Lv~lL~~~---------~---~---~~~~  143 (542)
                      ...+++.+...     ...++..-+..|.-+..-.++++.  +.+.++++.+.+.+.+.         .   |   ....
T Consensus       141 ~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~  220 (532)
T KOG4464|consen  141 TGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRAC  220 (532)
T ss_pred             HHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHH
Confidence            77777765431     124445555555555544556655  77889999999998642         1   1   2335


Q ss_pred             HHHHHHHHhhcC
Q psy12594        144 NAALALGGLAKD  155 (542)
Q Consensus       144 ~a~~~L~~l~~~  155 (542)
                      .++.++.|+..+
T Consensus       221 EaLK~~FNvt~~  232 (532)
T KOG4464|consen  221 EALKVFFNVTCD  232 (532)
T ss_pred             HHHHHHhheeec
Confidence            566777777743

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.30  E-value=0.45  Score=36.26  Aligned_cols=84  Identities=25%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy12594         86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ  165 (542)
Q Consensus        86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~  165 (542)
                      +...+..+.++.+.+|..++..|+++..... .......+++..+...|+++|+-+-..|+.+|..++...+.       
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-------   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-------   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------
Confidence            4566777888889999999999999986654 11123346788889999999999999999999999975554       


Q ss_pred             cCChHHHHHhccC
Q psy12594        166 CGALPPLVQILAS  178 (542)
Q Consensus       166 ~g~i~~L~~ll~~  178 (542)
                       .+++.|++...+
T Consensus        77 -~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 -EVLPILLDEYAD   88 (92)
T ss_pred             -HHHHHHHHHHhC
Confidence             235666655443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.17  E-value=1.2  Score=39.20  Aligned_cols=77  Identities=16%  Similarity=0.200  Sum_probs=59.3

Q ss_pred             hhHhhcCChHHHHhhhcC---------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHH
Q psy12594        119 AGLIEDKDLDSIISSLHD---------FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAF  189 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~  189 (542)
                      ..|++.||+..|++.|..         .+......++.||..+..........+-..+++..++..|.+++..++..++.
T Consensus       101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le  180 (187)
T PF06371_consen  101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE  180 (187)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred             HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence            338888999999988842         34678889999999998765554444445688999999999999999999999


Q ss_pred             HHHHHh
Q psy12594        190 ALDGIV  195 (542)
Q Consensus       190 ~L~nl~  195 (542)
                      +|..+|
T Consensus       181 iL~~lc  186 (187)
T PF06371_consen  181 ILAALC  186 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.14  E-value=7.1  Score=34.75  Aligned_cols=142  Identities=15%  Similarity=0.166  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCC-----CHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHH
Q psy12594        102 KTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDF-----DPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQ  174 (542)
Q Consensus       102 ~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~  174 (542)
                      ..++..|.-++++. +.+. +.+..+--.+...|...     ..-+|..++.+++.+.. +++...+.+....++|.+++
T Consensus       118 cnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         118 CNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            34555666666655 5555 76665443444444322     25688889999999885 45566677778899999999


Q ss_pred             hccCCCHhHHHHHHHHHHHHhcCCHHHHHH------hhh-CCChH-HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy12594        175 ILASPQLSLKHAAAFALDGIVKHSPELAES------ASD-CDVIP-LLIKALNNDEVNVKADAFLCLADIAKDSPSLAS  245 (542)
Q Consensus       175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~------~~~-~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  245 (542)
                      ++..++.-.+..|+.++..+..++......      +.. ...+. ...++.+.+...+...++++-..+|.+. ..+.
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p-~aR~  274 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP-HARA  274 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH-hHHH
Confidence            999988888888999998887754321111      100 11111 2223344556778888888888887663 3444

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.13  E-value=2.1  Score=36.90  Aligned_cols=112  Identities=18%  Similarity=0.234  Sum_probs=75.2

Q ss_pred             CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh--hCchHHHHHhhcCCChhhHHHHHHHHHHHhh---cCC
Q psy12594        292 GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE--LQGVGSLQTILQCPHKEQLQVAAAWTLGQIG---KHS  366 (542)
Q Consensus       292 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~---~~~  366 (542)
                      ..+.++..++++.++..+-.++..++.++..++.  +.+.+  ...+..++.+++......+++.++.++..|.   .+.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4566788999999999999999999988876532  12222  2467788899998766788888888888775   344


Q ss_pred             hHHHHHHHHc---CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        367 VDNVTALCEE---NVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       367 ~~~~~~l~~~---~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      ++..+.+.-.   ++++.++.++.+    ......+..+|..++..
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHH
Confidence            5555555432   344555555543    24566666666666543

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.12  E-value=3.6  Score=36.54  Aligned_cols=99  Identities=19%  Similarity=0.349  Sum_probs=76.3

Q ss_pred             HHH-HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcC-----CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHH
Q psy12594         17 RLC-FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD-----KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVL   90 (542)
Q Consensus        17 r~~-~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s-----~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv   90 (542)
                      |.+ ++..+-.++++|+.+..|.++.+--.+-..|..     .-+-.|..++..++.|....+......+....++|.++
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            443 456667778899999999998765455555532     23467899999999999433377888888899999999


Q ss_pred             HhhccCCHHHHHHHHHHHHHHhcCC
Q psy12594         91 KDLTKQNKHYKKTALHMLTCVAQQD  115 (542)
Q Consensus        91 ~~L~~~~~~~~~~a~~~L~~l~~~~  115 (542)
                      +++..+++..+.-++.++..+..++
T Consensus       196 rIme~gSElSktvaifI~qkil~dD  220 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDD  220 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccc
Confidence            9999988888888888888876544

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.07  E-value=11  Score=37.18  Aligned_cols=139  Identities=12%  Similarity=0.057  Sum_probs=82.4

Q ss_pred             hHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCh
Q psy12594        169 LPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN------NDEVNVKADAFLCLADIAKDSP  241 (542)
Q Consensus       169 i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~  241 (542)
                      .+.+-+-+...+ ..-|.+|+..|..++..-++....++    ...+..++.      ..+..-+..|+..++.|+....
T Consensus       212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~  287 (370)
T PF08506_consen  212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS  287 (370)
T ss_dssp             HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred             HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence            333333444333 56788888999999874333333332    122333333      3467888999999999987652


Q ss_pred             hh------------HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccc
Q psy12594        242 SL------------ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYN  308 (542)
Q Consensus       242 ~~------------~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~  308 (542)
                      ..            ...+....++| |. --.+..+-++..|++.+..+...-+...  +  .+++|.++.+|.+++.-+
T Consensus       288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~--l--~~~~~~l~~~L~~~~~vv  362 (370)
T PF08506_consen  288 TTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ--L--LQIFPLLVNHLQSSSYVV  362 (370)
T ss_dssp             -BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH--H--HHHHHHHHHHTTSS-HHH
T ss_pred             cccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH--H--HHHHHHHHHHhCCCCcch
Confidence            21            12333344555 44 1112367789999999888876544322  1  357899999999999888


Q ss_pred             hHHHHHHH
Q psy12594        309 SLPAIMAL  316 (542)
Q Consensus       309 ~~~a~~~L  316 (542)
                      ...|+.++
T Consensus       363 ~tyAA~~i  370 (370)
T PF08506_consen  363 HTYAAIAI  370 (370)
T ss_dssp             HHHHHHHH
T ss_pred             hhhhhhhC
Confidence            88887664

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2137|consensus

Probab=91.86  E-value=1.4  Score=45.93  Aligned_cols=169  Identities=15%  Similarity=0.148  Sum_probs=103.3

Q ss_pred             ChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594        168 ALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI  247 (542)
Q Consensus       168 ~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  247 (542)
                      ++|.|...++..+  -.+.-+.++.|+-.-.......-+...++|.|..-+++.+..+++.++..+..+++.-+   -.+
T Consensus       350 ~~p~l~pi~~~~~--~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~  424 (700)
T KOG2137|consen  350 MLPALKPIYSASD--PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPF  424 (700)
T ss_pred             hhHHHHHHhccCC--cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHH
Confidence            3666666666422  12222334444321111122222335667888888999999999999999998876532   344


Q ss_pred             HhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChH
Q psy12594        248 ADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQ  325 (542)
Q Consensus       248 ~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~  325 (542)
                      +...++| |-.+... .+..++.+++-|+..+...    .....-...+..+....+..++.+....+++..++......
T Consensus       425 vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~  500 (700)
T KOG2137|consen  425 VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS  500 (700)
T ss_pred             HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence            5567788 7666433 4889999999999998821    11111123345556666677888777777777766654443


Q ss_pred             HHHHHHhhCchHHHHHhhcCC
Q psy12594        326 IAEQIIELQGVGSLQTILQCP  346 (542)
Q Consensus       326 ~~~~~~~~~~l~~L~~ll~~~  346 (542)
                      . ..++...++|.++.+...+
T Consensus       501 g-~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  501 G-VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             c-eeeehhhhhhhhhhhhhcc
Confidence            3 3444557778777776654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.76  E-value=1.9  Score=38.06  Aligned_cols=108  Identities=19%  Similarity=0.191  Sum_probs=73.3

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc---------CCHHHHHHHHHHHHHHhcC
Q psy12594         44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK---------QNKHYKKTALHMLTCVAQQ  114 (542)
Q Consensus        44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~---------~~~~~~~~a~~~L~~l~~~  114 (542)
                      ..++..+.+.....  ..+..|..............|++.||+..|+..|..         .+......++.++..+...
T Consensus        69 ~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~  146 (187)
T PF06371_consen   69 EWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT  146 (187)
T ss_dssp             HHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence            34555555443322  333333333311234567788889999999998752         3357888999999999877


Q ss_pred             Chhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh
Q psy12594        115 DERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLA  153 (542)
Q Consensus       115 ~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~  153 (542)
                      ...... +-..+.+..++..|.++++.+|..++..|..++
T Consensus       147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            766666 556789999999999999999999999998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.70  E-value=15  Score=36.38  Aligned_cols=128  Identities=14%  Similarity=0.185  Sum_probs=75.9

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh------cCCccchHHHHHHHhHhhcCChH------------
Q psy12594        264 GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID------CNGGYNSLPAIMALGYMSAQSEQ------------  325 (542)
Q Consensus       264 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~------~~~~~~~~~a~~~L~~l~~~~~~------------  325 (542)
                      ...|..|+..+..|+...+.....++    ...+..++.      +.++..+..|+..++.++.....            
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v  300 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV  300 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence            44677899999999865433322221    122333333      24556777889999988854321            


Q ss_pred             HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594        326 IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL  403 (542)
Q Consensus       326 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL  403 (542)
                      ....+....++|-|.  -.....+-++..|++.+..+-..-+.  ..+.  +++|.++..|.++  +.-|+..|+.++
T Consensus       301 ~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~--~~vv~tyAA~~i  370 (370)
T PF08506_consen  301 DVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSS--SYVVHTYAAIAI  370 (370)
T ss_dssp             -HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS---HHHHHHHHHHH
T ss_pred             cHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCC--CcchhhhhhhhC
Confidence            234445556666655  12223467899999999888443222  2222  3789999999987  457888888775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.48  E-value=1.4  Score=33.64  Aligned_cols=70  Identities=16%  Similarity=0.115  Sum_probs=56.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594        212 PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       212 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~  283 (542)
                      ...+..+.++.+.+|..++..|..+.....  ........++. +...|+++|+-|--+|+.+|..|+...|.
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            445667788889999999999999998764  22222357778 88999999999999999999999976554

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.47  E-value=1.6  Score=37.44  Aligned_cols=38  Identities=18%  Similarity=0.217  Sum_probs=32.1

Q ss_pred             CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHH
Q psy12594        334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT  371 (542)
Q Consensus       334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  371 (542)
                      ..++.|.++++.+....+|.++.+++|.|++-+|-..+
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k   47 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK   47 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence            56788999999987789999999999999987765444

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=90.99  E-value=2.3  Score=36.38  Aligned_cols=145  Identities=19%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594         84 NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER  162 (542)
Q Consensus        84 ~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (542)
                      ..++.|+.+|+. .+..+|.+++++|+.+..-+|...+....+.-..   .-...+......... ........++    
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~l~-~~~~~~~~ee----   81 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDISLP-MMGISPSSEE----   81 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhHHh-hccCCCchHH----
Confidence            356677788876 4699999999999999877766655211111000   001111111111111 1111112223    


Q ss_pred             HHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594        163 IVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA  237 (542)
Q Consensus       163 i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  237 (542)
                      ..-..++..|++.|+++. ..-...++.++.++.......+.... ..++|.++..++..+...++...+-|+.|.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            333334788888888875 34444566666666542211222222 466789999999777788888877777664

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=90.97  E-value=16  Score=35.53  Aligned_cols=155  Identities=15%  Similarity=0.151  Sum_probs=108.3

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhc-CChhhhh-Hhhc-C-ChHHHHhhhcCC-----C--------HHHHHHHHHH
Q psy12594         86 VALVLKDLTKQNKHYKKTALHMLTCVAQ-QDERCAG-LIED-K-DLDSIISSLHDF-----D--------PDTRANAALA  148 (542)
Q Consensus        86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~-~~~~~~~-~~~~-g-~v~~Lv~lL~~~-----~--------~~~~~~a~~~  148 (542)
                      ++.+.+.|++....+...++..|..+.. ....... +... + -.+.+.+++...     +        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7778888988888888899999999987 4434444 4432 2 234455555211     1        2788777765


Q ss_pred             HHH-hhcCChHHHHHHHHc-CChHHHHHhccCCCHhHHHHHHHHHHH-HhcCC---HHHHHHhhhCCChHHHHHhhcCCC
Q psy12594        149 LGG-LAKDNKHFAERIVQC-GALPPLVQILASPQLSLKHAAAFALDG-IVKHS---PELAESASDCDVIPLLIKALNNDE  222 (542)
Q Consensus       149 L~~-l~~~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~n-l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~  222 (542)
                      +.. +...++..+..+++. +.+..+.+.|..+++++....+.+|.. +..+.   ...+..++....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            554 446677777777765 678889999998889999999888885 44322   334445666777888888877666


Q ss_pred             H----HHHHHHHHHHHHHhcCC
Q psy12594        223 V----NVKADAFLCLADIAKDS  240 (542)
Q Consensus       223 ~----~~~~~a~~~L~~l~~~~  240 (542)
                      +    .+...+-..|..+|.+.
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCC
Confidence            6    78888888888888654

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=90.88  E-value=8  Score=36.40  Aligned_cols=183  Identities=18%  Similarity=0.158  Sum_probs=100.7

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcC--cHHHHHHhhc----cCCHHHHHHHHHHHHHHhcCChh
Q psy12594         44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERN--LVALVLKDLT----KQNKHYKKTALHMLTCVAQQDER  117 (542)
Q Consensus        44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~--~l~~Lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~  117 (542)
                      ..+...+.+=.++.+.-++..++-++  -++.....+...+  ....+...+.    ...+..+..++++++|+..+...
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~  143 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAA--LHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG  143 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHC--CCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHH--hCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence            33444444434455667777777777  6655555444333  2334444433    25688899999999999877655


Q ss_pred             hhhHhhc-C-ChHHHHhhhcCC----CHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhcc-C-CCHhHHHHHH
Q psy12594        118 CAGLIED-K-DLDSIISSLHDF----DPDTRANAALALGGLAKDNKHFA-ERIVQCGALPPLVQILA-S-PQLSLKHAAA  188 (542)
Q Consensus       118 ~~~~~~~-g-~v~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~-~-~~~~~~~~a~  188 (542)
                      ...+... + .+...+..+...    +..+|..++..+.|++......+ ..-.....+..+++.+. . .+++....++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            5543332 3 333343333333    68889888889999873111100 00001112455556333 2 4799999999


Q ss_pred             HHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHH
Q psy12594        189 FALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKAD  228 (542)
Q Consensus       189 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~  228 (542)
                      -+|+++...++.........++-..+...-. ...+.+++.
T Consensus       224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v  264 (268)
T PF08324_consen  224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEV  264 (268)
T ss_dssp             HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHH
Confidence            9999999866554444333333333333322 334444443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1822|consensus

Probab=90.61  E-value=43  Score=39.70  Aligned_cols=231  Identities=16%  Similarity=0.205  Sum_probs=120.7

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-  120 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-  120 (542)
                      ...++..+...+|..+..+..++.+++  ...+-..-  -....+..++-+.+ .++-.|..-.-+++.+-+....... 
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLa--q~v~~~~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLA--QVVGSAPF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHH--Hhccccch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            344556667778888888888888888  43111010  12234455666665 3333333223333333322211111 


Q ss_pred             HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc-CCC--HhHHHHHHHHHH----
Q psy12594        121 LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA-SPQ--LSLKHAAAFALD----  192 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~--~~~~~~a~~~L~----  192 (542)
                      -.....+..+..+.+++. |.++..++.++.-+...........++.. +..+..++. .++  .++...--+++.    
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~t-lsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPT-LSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHH-HHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            112234566677776665 69999999999988854444334443333 333334433 332  223222222222    


Q ss_pred             --HHhc-CCHHHH-------HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC
Q psy12594        193 --GIVK-HSPELA-------ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY  261 (542)
Q Consensus       193 --nl~~-~~~~~~-------~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~  261 (542)
                        ++.. -.|+..       ...+....+-...-++.++++..+..+..++-++.-..+.   .+.-.-.++ +..++..
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr---~~n~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR---HVNLDSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch---hccHHHHHHHHHHHhcc
Confidence              2211 011100       0001111112223334455788888899998888766542   222234566 8888888


Q ss_pred             CChhHHHHHHHHHHHHhcCC
Q psy12594        262 PHGLVQKNAATLLRDMCKHN  281 (542)
Q Consensus       262 ~~~~v~~~a~~~L~~L~~~~  281 (542)
                      .-.-.|...+.+++.+....
T Consensus      1110 ~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhHHH
Confidence            87778888888888887554

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=90.51  E-value=7.3  Score=34.03  Aligned_cols=140  Identities=16%  Similarity=0.085  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHhcC-CHHHHH----Hhh-hC------CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-
Q psy12594        183 LKHAAAFALDGIVKH-SPELAE----SAS-DC------DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-  249 (542)
Q Consensus       183 ~~~~a~~~L~nl~~~-~~~~~~----~~~-~~------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-  249 (542)
                      +|..|+.+|..++.. ++....    .++ +.      ...+.+.-++.++++.+|..|+.++..|-++...+.....+ 
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            577788888888775 221111    111 11      22344555667889999999999999997765332221111 


Q ss_pred             ------------------hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHH-HHhcCCHHHHHHhhhcCCccc
Q psy12594        250 ------------------GATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANL-VVLAGGLDGLLRLIDCNGGYN  308 (542)
Q Consensus       250 ------------------~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~~~i~~Lv~lL~~~~~~~  308 (542)
                                        ..... |+..|+.. +..+....+.++..|....|-..-. =.-...+..+..++.+.|+.+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                              12334 56666665 7888889999999999887654311 011234556667788899999


Q ss_pred             hHHHHHHHhHhhcC
Q psy12594        309 SLPAIMALGYMSAQ  322 (542)
Q Consensus       309 ~~~a~~~L~~l~~~  322 (542)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999988654

>KOG2933|consensus

Probab=90.40  E-value=2.3  Score=39.74  Aligned_cols=143  Identities=12%  Similarity=0.112  Sum_probs=97.9

Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC
Q psy12594        255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ  334 (542)
Q Consensus       255 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  334 (542)
                      .+..|.+.+-.....++..++.|+...++....... .++..++.-++.....+...|+.+++.+...-.+....     
T Consensus        93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-----  166 (334)
T KOG2933|consen   93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-----  166 (334)
T ss_pred             HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            667777777788888888888888766654443332 45667778888888889999999999987654433332     


Q ss_pred             chHHHH-HhhcCCC--hhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594        335 GVGSLQ-TILQCPH--KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE  411 (542)
Q Consensus       335 ~l~~L~-~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~  411 (542)
                      .+..++ .++....  +.-+++.|..+|..++.+-..+       .+++.|+..+.+..  ..++..++....+.....+
T Consensus       167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~  237 (334)
T KOG2933|consen  167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLG  237 (334)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhc--hhhhhhhhccccccceecc
Confidence            222233 3333322  2468999999999987654322       25678888888874  5899999888888776655


Q ss_pred             C
Q psy12594        412 N  412 (542)
Q Consensus       412 ~  412 (542)
                      +
T Consensus       238 v  238 (334)
T KOG2933|consen  238 V  238 (334)
T ss_pred             c
Confidence            3

>KOG2933|consensus

Probab=90.40  E-value=1.3  Score=41.42  Aligned_cols=141  Identities=20%  Similarity=0.265  Sum_probs=96.4

Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV  164 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  164 (542)
                      .+...++.|.+++...+..++..+..++...++...-.-+.++-.+++-+++....+-..|+.++..+...-.   ..+.
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln---~~i~  165 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN---NSID  165 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            4556777888899999999999999998766544441222466677777888888999999999998875222   2222


Q ss_pred             HcCChHHH-HHhcc---CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594        165 QCGALPPL-VQILA---SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA  237 (542)
Q Consensus       165 ~~g~i~~L-~~ll~---~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  237 (542)
                      +  ....+ ..++.   .++.-+++.|-.+|..+..+-..       ..+++.|+..+++..+.++..++.++.+..
T Consensus       166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            2  12223 33333   23467899999999988874321       234577888888889999988887766553

>KOG1822|consensus

Probab=90.15  E-value=47  Score=39.42  Aligned_cols=297  Identities=18%  Similarity=0.148  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC-CHHHHHHHHH------HHHHHhcCChh--hhh-HhhcC
Q psy12594         56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ-NKHYKKTALH------MLTCVAQQDER--CAG-LIEDK  125 (542)
Q Consensus        56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~------~L~~l~~~~~~--~~~-~~~~g  125 (542)
                      .+...|....+.+.....+..+..+.+  .++..+.-.+.. ...++..+..      ++..++.....  ... .+..-
T Consensus       799 s~Idta~~lfg~vfp~v~~k~~~~ile--~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~  876 (2067)
T KOG1822|consen  799 SLIDTAVSLFGSVFPHVNNKIRLSILE--HFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSS  876 (2067)
T ss_pred             HHHHHHHHHHHHhccCccHHHHHHHHH--HHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence            455667777777772222445444443  233333322222 2334444333      34444433321  111 22333


Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAES  204 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~  204 (542)
                      ....++..+...+|..+-.+..+++.++..-+.  ..++ .+..+.+++-+.+. ++-.|.--..+++.+-++.......
T Consensus       877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            455667777788899998888888888842221  1111 11234445555543 4444444444555554422111111


Q ss_pred             hhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC-C--ChhHHHHHHHHHH----
Q psy12594        205 ASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY-P--HGLVQKNAATLLR----  275 (542)
Q Consensus       205 ~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~-~--~~~v~~~a~~~L~----  275 (542)
                      -.....+..+..+.+++ ++.+++.++.++..+...........++ .-+. +..+|-. +  ..++...--.++.    
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence            11134466777777766 5689999999999998876555543333 3333 4444433 2  3444444333333    


Q ss_pred             --HHhcC-ChH--------HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhc
Q psy12594        276 --DMCKH-NLR--------LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQ  344 (542)
Q Consensus       276 --~L~~~-~~~--------~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  344 (542)
                        ++... .|+        ... ..+.-.+-...-++.++++-++..++.++-++-...+....   -..++..|..++.
T Consensus      1033 ~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred             HHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence              22211 111        111 11112222333345566777888888888887655443221   1235556666666


Q ss_pred             CCChhhHHHHHHHHHHHhh
Q psy12594        345 CPHKEQLQVAAAWTLGQIG  363 (542)
Q Consensus       345 ~~~~~~v~~~a~~~L~~l~  363 (542)
                      +.. --.|.....++..++
T Consensus      1109 s~~-~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SSY-LILRRASFSCLRQLV 1126 (2067)
T ss_pred             chh-hhhhhhHHhhhhHHh
Confidence            532 234444444444443

>KOG1566|consensus

Probab=90.13  E-value=17  Score=34.32  Aligned_cols=203  Identities=11%  Similarity=0.139  Sum_probs=134.8

Q ss_pred             HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH---HHhh--hCCChHHHHHhhcCCCHHHHHHHHHHHH
Q psy12594        160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA---ESAS--DCDVIPLLIKALNNDEVNVKADAFLCLA  234 (542)
Q Consensus       160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~---~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~L~  234 (542)
                      ...+.++|.+..+++.+..-+-+.+..++.+..|+-...-..+   ...+  ....+..|+.--.+ .+++.-.+-..|.
T Consensus        72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            3556678889999999998888888888888888765332111   1111  12223333333221 3555555555555


Q ss_pred             HHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc-CChHHHHHHHhc-C-C-HHHHHHhhhcCCccch
Q psy12594        235 DIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK-HNLRLANLVVLA-G-G-LDGLLRLIDCNGGYNS  309 (542)
Q Consensus       235 ~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~-~-~-i~~Lv~lL~~~~~~~~  309 (542)
                      ...++. ...+.+....-.. .....+.+.-++...|..++..+.. |....++.+... . . .+.--.++.+.+.-.+
T Consensus       151 Ecirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk  229 (342)
T KOG1566|consen  151 ECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK  229 (342)
T ss_pred             HHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence            555554 4677777777778 8888888888999999999887754 434444433321 1 2 3336677888888899


Q ss_pred             HHHHHHHhHhhcCChH---HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594        310 LPAIMALGYMSAQSEQ---IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH  365 (542)
Q Consensus       310 ~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  365 (542)
                      ..+...+|.+-.+.+.   ..+.+.+...+..++.+|+..+ ..+|.+|-....-..++
T Consensus       230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdks-kniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS-KNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc-ccchHHHHHHHHHHhcC
Confidence            9999999998754332   2344445578999999999865 48999998887777654

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=89.89  E-value=3.7  Score=35.80  Aligned_cols=140  Identities=20%  Similarity=0.208  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhcCCCCchH------HHH------hCCchH-HHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHH
Q psy12594         15 RARLCFVQTMSAFADKPSTIH------FLK------DLNVVD-LIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEV   80 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~~~~~~~------~l~------~~g~i~-~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i   80 (542)
                      |.|..++.+|..+++.-+-|.      .+.      ..+.-+ .+--++.+.++.+|..|+.++..|.  +. ...-...
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL--~gsk~~L~~A   78 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALL--EGSKPFLAQA   78 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHH--HccHHHHHHH
Confidence            357777888877777522221      111      222333 4445567889999999999999999  54 2211111


Q ss_pred             Hhc-------------------CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-H-hhcCChHHHHhhhcCCC
Q psy12594         81 LER-------------------NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-L-IEDKDLDSIISSLHDFD  138 (542)
Q Consensus        81 ~~~-------------------~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~g~v~~Lv~lL~~~~  138 (542)
                      .+.                   ..-..|+..|.. .+.......+.++..+....|..+- . .-...+..+..++.+.|
T Consensus        79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d  158 (182)
T PF13251_consen   79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD  158 (182)
T ss_pred             HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence            111                   112233334554 4577778888999998887766554 1 11134444556667889


Q ss_pred             HHHHHHHHHHHHHhhcCC
Q psy12594        139 PDTRANAALALGGLAKDN  156 (542)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~  156 (542)
                      +.++..++.+++.+....
T Consensus       159 ~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  159 PNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            999999999998887543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.70  E-value=2.1  Score=36.92  Aligned_cols=112  Identities=22%  Similarity=0.252  Sum_probs=73.1

Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc--CChHHHHhhhcCCC-HHHHHHHHHHHHHhh---cCChH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED--KDLDSIISSLHDFD-PDTRANAALALGGLA---KDNKH  158 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~---~~~~~  158 (542)
                      ....+..+|++.++.-|-.++..+..++...+. ..+.+.  ..+..++..|+.++ +.+.+.++.+|..+.   .+.++
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            445677788888888888888888887755421 113222  35778888888766 677888888888776   45566


Q ss_pred             HHHHHHHc---CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594        159 FAERIVQC---GALPPLVQILASPQLSLKHAAAFALDGIVKHSP  199 (542)
Q Consensus       159 ~~~~i~~~---g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~  199 (542)
                      ..+.+...   ++++.+++++++  ......++.+|..+....|
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence            55555444   345555555554  4566677777777665443

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.26  E-value=1.7  Score=41.00  Aligned_cols=159  Identities=14%  Similarity=0.013  Sum_probs=85.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc--hHH-HHHhhcC----CChhHHHHHHHHHHHHhcCChHH
Q psy12594        212 PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA--TTL-AVEHLTY----PHGLVQKNAATLLRDMCKHNLRL  284 (542)
Q Consensus       212 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~-L~~lL~~----~~~~v~~~a~~~L~~L~~~~~~~  284 (542)
                      ..+..++...+.+-+-.++..+.-+..+. .....+....  +.. +..++..    ..+..+..+++++.|+..+....
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALHP-PASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCCH-CHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhCc-cHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            33444555444455555666665554443 3333333221  233 3333332    36778889999999998776555


Q ss_pred             HHHHHhcC-CHHHHHHhhhcC----CccchHHHHHHHhHhhcCChHHH-HHHHhhCchHHHHH-hhcCCChhhHHHHHHH
Q psy12594        285 ANLVVLAG-GLDGLLRLIDCN----GGYNSLPAIMALGYMSAQSEQIA-EQIIELQGVGSLQT-ILQCPHKEQLQVAAAW  357 (542)
Q Consensus       285 ~~~~~~~~-~i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~-ll~~~~~~~v~~~a~~  357 (542)
                      ...+.... .+...+..+...    +..++.++...+.|++....... ..-.....+..+.+ +.....+++....++-
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            44333322 233333333333    56788888889998874211110 00011124555666 3444356788889999


Q ss_pred             HHHHhhcCChHHHH
Q psy12594        358 TLGQIGKHSVDNVT  371 (542)
Q Consensus       358 ~L~~l~~~~~~~~~  371 (542)
                      ++|++...++....
T Consensus       225 AlGtL~~~~~~~~~  238 (268)
T PF08324_consen  225 ALGTLLSSSDSAKQ  238 (268)
T ss_dssp             HHHHHHCCSHHHHH
T ss_pred             HHHHHhccChhHHH
Confidence            99999866654433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=89.19  E-value=19  Score=33.64  Aligned_cols=213  Identities=17%  Similarity=0.133  Sum_probs=121.8

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcC--CCHHHHHHHHHHHHHhhcCC---hHHHHHH
Q psy12594         89 VLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHD--FDPDTRANAALALGGLAKDN---KHFAERI  163 (542)
Q Consensus        89 Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~---~~~~~~i  163 (542)
                      |=..|.++++.+|..++.+|..+...-+...  ....-+..|++.+.+  .|......++.++..+....   ++.... 
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~-   80 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVK-   80 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHH-
Confidence            4456788999999999999999765433211  111223444444322  24444444466666665322   121111 


Q ss_pred             HHcCChHHHHHhcc--CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC
Q psy12594        164 VQCGALPPLVQILA--SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       164 ~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~  240 (542)
                          ++..+.+-..  +-....|..+...|..+..+..+.... .....+..+++.+. ..||+-.-.+...+..+...-
T Consensus        81 ----i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~  155 (262)
T PF14500_consen   81 ----ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF  155 (262)
T ss_pred             ----HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence                1222222222  122677888888898888743322222 22456778888887 458887777777777666543


Q ss_pred             hhhHHHHHhhchHH-HHHhhc--------CC--Ch--hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCcc
Q psy12594        241 PSLASTIADGATTL-AVEHLT--------YP--HG--LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY  307 (542)
Q Consensus       241 ~~~~~~~~~~~~i~-L~~lL~--------~~--~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~  307 (542)
                      + .      ....+ +.+.+.        .+  |+  -.++.....|++.-...+..+     .-.+|.|++-|.++.+.
T Consensus       156 ~-~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~  223 (262)
T PF14500_consen  156 D-I------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPS  223 (262)
T ss_pred             c-c------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcH
Confidence            2 1      12233 443332        11  22  234444455555444455443     35788999999999999


Q ss_pred             chHHHHHHHhHhhc
Q psy12594        308 NSLPAIMALGYMSA  321 (542)
Q Consensus       308 ~~~~a~~~L~~l~~  321 (542)
                      ++..++.+|...+.
T Consensus       224 ~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  224 VKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.02  E-value=2.5  Score=35.37  Aligned_cols=73  Identities=21%  Similarity=0.184  Sum_probs=62.3

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~  113 (542)
                      .++..|.+-|.+.++.++..|+..|..+...........+...+++..|++++.. .++.++...+..+...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            4566777888899999999999999999943347888888888999999999987 789999999999988763

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=88.78  E-value=25  Score=34.32  Aligned_cols=156  Identities=19%  Similarity=0.187  Sum_probs=111.7

Q ss_pred             hHHHHhhhcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHc-CC-hHHHHHhccCC-----C--------HhHHHHHHHH
Q psy12594        127 LDSIISSLHDFDPDTRANAALALGGLAK-DNKHFAERIVQC-GA-LPPLVQILASP-----Q--------LSLKHAAAFA  190 (542)
Q Consensus       127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~-g~-i~~L~~ll~~~-----~--------~~~~~~a~~~  190 (542)
                      ++.+.+.|+...+.+...++..|..+.. ......+.+.+. +. .+.+.+++...     .        +++|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788888888888888899999999997 776777777665 32 44566666321     1        1777777765


Q ss_pred             HHH-HhcCCHHHHHHhhh-CCChHHHHHhhcCCCHHHHHHHHHHHHH-HhcCC---hhhHHHHHhhchHH-HHHhhcCCC
Q psy12594        191 LDG-IVKHSPELAESASD-CDVIPLLIKALNNDEVNVKADAFLCLAD-IAKDS---PSLASTIADGATTL-AVEHLTYPH  263 (542)
Q Consensus       191 L~n-l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~-l~~~~---~~~~~~~~~~~~i~-L~~lL~~~~  263 (542)
                      +.. +...++..+..+.+ .+.+..+.+-+..+++++....+.+|.. +..+.   ...+-.+.....+. |..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            544 44556667776664 4567888888888888999999888884 44443   12334556677888 999888777


Q ss_pred             h----hHHHHHHHHHHHHhcCCh
Q psy12594        264 G----LVQKNAATLLRDMCKHNL  282 (542)
Q Consensus       264 ~----~v~~~a~~~L~~L~~~~~  282 (542)
                      +    .+...+-..|..+|....
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCC
Confidence            7    899999999999986543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=87.98  E-value=3.4  Score=34.27  Aligned_cols=73  Identities=15%  Similarity=0.099  Sum_probs=60.8

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~  113 (542)
                      .++..+.+-|++.++.++..|+..|..+...........+...+++..+++++..      .++.++...+..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4566788888999999999999999999943348888889889999999999963      468999999988888763

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=87.75  E-value=3.5  Score=34.47  Aligned_cols=73  Identities=18%  Similarity=0.202  Sum_probs=61.7

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~  113 (542)
                      .++..|.+-|++.++.++..|+..|..+...........+...+++..|++++. ..++.++..++.++...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            566778888899999999999999999994334778888888999999999987 4678999999999888763

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=87.23  E-value=4.4  Score=33.46  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=60.1

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc---CCHHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK---QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~---~~~~~~~~a~~~L~~l~~  113 (542)
                      .++..|.+-|++.+|.++..|+..|..+.....+.....+.....+..+++++..   .++.++..++.++...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4566788888999999999999999999943336677888777888889999875   468999999999988764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2611|consensus

Probab=87.19  E-value=35  Score=34.28  Aligned_cols=131  Identities=16%  Similarity=0.186  Sum_probs=89.6

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhhccC-----CH--HHHHHHHHHHHHHhcCCh
Q psy12594         46 IVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDLTKQ-----NK--HYKKTALHMLTCVAQQDE  116 (542)
Q Consensus        46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L~~~-----~~--~~~~~a~~~L~~l~~~~~  116 (542)
                      +..+++......|..|+...-+++...+  ..+++.+.+.=+++.+-+++.+.     .+  -.+.-++.+|...|+.. 
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p-   94 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP-   94 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh-
Confidence            4566677778889999999999994444  44566677777777777777641     12  33455666777777554 


Q ss_pred             hhhh---HhhcCChHHHHhhhcCC-CH------HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC
Q psy12594        117 RCAG---LIEDKDLDSIISSLHDF-DP------DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ  180 (542)
Q Consensus       117 ~~~~---~~~~g~v~~Lv~lL~~~-~~------~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~  180 (542)
                      +...   ++  +.+|.|...+... |+      .+...+-.+|..++...+. ...++..|+++.+.++-.-++
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~  165 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPD  165 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCC
Confidence            3322   33  4688888888643 22      3667788899999886444 688889999999998766544

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=87.00  E-value=18  Score=31.90  Aligned_cols=146  Identities=14%  Similarity=0.094  Sum_probs=91.1

Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV  164 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  164 (542)
                      .++.++++..+++..++..|+.++..+....=-    .-...+|.++.+..++++.++..|...+..+....+.....-.
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~   84 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY   84 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            567888888889999999999999887643100    0113689999999999999999999999999876655444433


Q ss_pred             HcCChHHHHHhc---cCCC-HhH---HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--------CHHHHHHH
Q psy12594        165 QCGALPPLVQIL---ASPQ-LSL---KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--------EVNVKADA  229 (542)
Q Consensus       165 ~~g~i~~L~~ll---~~~~-~~~---~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~~~~~a  229 (542)
                      ..| +..-.++-   ..+. ...   ......-+..+...+...+..++     ..+++.+...        .+.-....
T Consensus        85 ~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~~~~~~~~~~~~~~l~~~  158 (187)
T PF12830_consen   85 SEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDFDLTKLSSESSPSDLDFL  158 (187)
T ss_pred             HHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHhhccccccccchhHHHHH
Confidence            334 33222222   1111 111   34444555566665566666554     5555555432        33445556


Q ss_pred             HHHHHHHhcCC
Q psy12594        230 FLCLADIAKDS  240 (542)
Q Consensus       230 ~~~L~~l~~~~  240 (542)
                      .++.-||+.-+
T Consensus       159 ~Fla~nLA~l~  169 (187)
T PF12830_consen  159 LFLAENLATLP  169 (187)
T ss_pred             HHHHHHHhcCC
Confidence            66666666543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=86.80  E-value=37  Score=34.21  Aligned_cols=255  Identities=12%  Similarity=0.071  Sum_probs=137.7

Q ss_pred             HHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCC-
Q psy12594         60 AALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD-  138 (542)
Q Consensus        60 ~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~-  138 (542)
                      .+-..|.++......+.....++...+..|+.++.++++.-|.....+|.++-..-...+.++.......+.+.+.... 
T Consensus       109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~  188 (409)
T PF01603_consen  109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETER  188 (409)
T ss_dssp             HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccc
Confidence            3445666665211111123334556778899999999999999999999997544445555444455566666665443 


Q ss_pred             HHHHHHHHHHHHHhhcCCh----HHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHH
Q psy12594        139 PDTRANAALALGGLAKDNK----HFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPL  213 (542)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~----~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~  213 (542)
                      ..-....+..++.+..+..    +.-..+.    ...++-+.+.+. ......-..++..+...++.....++     ..
T Consensus       189 ~~gI~elLeil~sii~gf~~plk~eh~~fl----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~  259 (409)
T PF01603_consen  189 HNGIAELLEILGSIINGFAVPLKEEHKQFL----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KG  259 (409)
T ss_dssp             -STHHHHHHHHHHHHTT--SS--HHHHHHH----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HH
Confidence            4444566777777775422    1111222    233344445443 33344445566666665665554443     44


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh--
Q psy12594        214 LIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVL--  290 (542)
Q Consensus       214 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--  290 (542)
                      +++.--..+..-....+.-+..+...-+...-.-+...+.. +..++.+.+..|.+.|+..+.     ++.....+.+  
T Consensus       260 llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~li~~~~  334 (409)
T PF01603_consen  260 LLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLSLISQNS  334 (409)
T ss_dssp             HHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHHHHHCTH
T ss_pred             HHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHHHHHhCh
Confidence            44444445555444555556666554332222223345666 778888888888888775432     2222222211  


Q ss_pred             cCCHHHHHHhhhc-----CCccchHHHHHHHhHhhcCChHHHH
Q psy12594        291 AGGLDGLLRLIDC-----NGGYNSLPAIMALGYMSAQSEQIAE  328 (542)
Q Consensus       291 ~~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~  328 (542)
                      ..++|.+..-+..     -+..++..|..++..+..-++....
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence            1245555555433     3556888888888888777666544

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=86.74  E-value=48  Score=35.37  Aligned_cols=349  Identities=10%  Similarity=0.059  Sum_probs=178.9

Q ss_pred             hcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHH
Q psy12594         27 FADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTAL  105 (542)
Q Consensus        27 l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~  105 (542)
                      +-+.+...+.+.+.=+++.+++..++..--.+..|+..+..+.  .+ ++.   -.-....+....++.+.+..++..|+
T Consensus       446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~e--eDfkd~---~ill~aye~t~ncl~nn~lpv~ieAa  520 (970)
T COG5656         446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIE--EDFKDN---GILLEAYENTHNCLKNNHLPVMIEAA  520 (970)
T ss_pred             HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHH--Hhcccc---hHHHHHHHHHHHHHhcCCcchhhhHH
Confidence            3344555555555666677777777777788888998888886  44 222   12233566677788887788999999


Q ss_pred             HHHHHHhcCChhhhhHhh--cCChHHHHhhhcCCCHHHHHHHHHHH-HHhhcCChHHHHHHHHcCChHHHHH----hccC
Q psy12594        106 HMLTCVAQQDERCAGLIE--DKDLDSIISSLHDFDPDTRANAALAL-GGLAKDNKHFAERIVQCGALPPLVQ----ILAS  178 (542)
Q Consensus       106 ~~L~~l~~~~~~~~~~~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L-~~l~~~~~~~~~~i~~~g~i~~L~~----ll~~  178 (542)
                      .++.-+-.+...+.++.+  .+.++.|+.+-+..+.+....+...+ ...+..-..+...+.. ..+..+++    ++..
T Consensus       521 lAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~en  599 (970)
T COG5656         521 LALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLEN  599 (970)
T ss_pred             HHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcC
Confidence            998887766533333322  24566666666655544433333322 2222222222222221 12333333    3332


Q ss_pred             CC------HhHHHHHHHHHHHHhc------CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy12594        179 PQ------LSLKHAAAFALDGIVK------HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST  246 (542)
Q Consensus       179 ~~------~~~~~~a~~~L~nl~~------~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  246 (542)
                      ++      .+-+.+|.+.|..+..      ..+..-+. .+....|.+--.+.+.-.+.-..|+..+-+..--..+.-. 
T Consensus       600 s~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~p-  677 (970)
T COG5656         600 SSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEP-  677 (970)
T ss_pred             CccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhh-
Confidence            21      3445666666665543      11222222 2234455555566666666777777776554322211111 


Q ss_pred             HHhhchHH-HHHhhcCCC-hhHHHHHHHHHHHHhcCC-hHHHH-HHHhcCCHHHHHHhhhcCCc--cchHHHHHHHhHhh
Q psy12594        247 IADGATTL-AVEHLTYPH-GLVQKNAATLLRDMCKHN-LRLAN-LVVLAGGLDGLLRLIDCNGG--YNSLPAIMALGYMS  320 (542)
Q Consensus       247 ~~~~~~i~-L~~lL~~~~-~~v~~~a~~~L~~L~~~~-~~~~~-~~~~~~~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~  320 (542)
                       .--|+.+ +.+++.+.. ......+.-++.|+.... .+..+ .....-..+.....+.+++.  .-...+++.+-.++
T Consensus       678 -imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~  756 (970)
T COG5656         678 -IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLI  756 (970)
T ss_pred             -hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHH
Confidence             1235666 666666665 356667777888876443 11111 00001112233344444443  33455666555544


Q ss_pred             cCChH-HHHHHHhhCchHHHHHhhcCC------ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcC
Q psy12594        321 AQSEQ-IAEQIIELQGVGSLQTILQCP------HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT  389 (542)
Q Consensus       321 ~~~~~-~~~~~~~~~~l~~L~~ll~~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~  389 (542)
                      -.-.+ .-.     .-+|.+.+...++      .........--.+.|+.....+..+.+-+.|.+.......-+.
T Consensus       757 Ln~rd~Ll~-----qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~  827 (970)
T COG5656         757 LNIRDELLS-----QYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQ  827 (970)
T ss_pred             HHccchhHH-----hhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence            21111 111     1233333332211      1122233333456677677777788888889888887766654

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.68  E-value=28  Score=32.57  Aligned_cols=172  Identities=14%  Similarity=0.080  Sum_probs=94.4

Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-------ChHHHHHHHHcCChHHHHHhccCCC----HhHHHHHHHHHHHH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKD-------NKHFAERIVQCGALPPLVQILASPQ----LSLKHAAAFALDGI  194 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~nl  194 (542)
                      +.+.+++.+.+..  .-+.++..|..+...       .++.+-.+.=.+.+|.++.-+.+++    ......++..|..+
T Consensus        65 lq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~  142 (262)
T PF14225_consen   65 LQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV  142 (262)
T ss_pred             HHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence            3344445555443  334456666666532       1111222222245777777777766    13445566777777


Q ss_pred             hcCCHHHHHHhhhCCChHHHHHhhc-C---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHH
Q psy12594        195 VKHSPELAESASDCDVIPLLIKALN-N---DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKN  269 (542)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~L~~ll~-~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~  269 (542)
                      |....        ...+..++.... .   +..+....++..|..-..  |+.     +...+. |+.+|.++.+.++..
T Consensus       143 a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~  207 (262)
T PF14225_consen  143 AEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRK  207 (262)
T ss_pred             HHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHH
Confidence            75211        222333333322 2   234455555555543211  111     125566 999999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594        270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM  319 (542)
Q Consensus       270 a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l  319 (542)
                      +..+|..+-.+.+-...  ...+.+.++.++++.+..   ..|+.+|.++
T Consensus       208 ~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~  252 (262)
T PF14225_consen  208 TLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEI  252 (262)
T ss_pred             HHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence            99999999766432222  345678888888877654   3455555444

>KOG0891|consensus

Probab=86.08  E-value=15  Score=44.98  Aligned_cols=268  Identities=17%  Similarity=0.136  Sum_probs=139.5

Q ss_pred             hhhcCCChHHHHHHHHHHHHhHccCChHHHHHH----H--hcCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         48 PLLADKVPSIQHAALATLGKLMCAKHVDIRQEV----L--ERNLVALVLKD-LTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        48 ~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i----~--~~~~l~~Lv~~-L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      ..+...+++++..+...+..+.  .........    .  ....+..+..+ +.+.++.++......+.     ....+.
T Consensus       488 ~~~~~~~~e~r~~~~l~~~~ll--~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~  560 (2341)
T KOG0891|consen  488 SYLEADDSEIRKNAALTCCELL--KYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQ  560 (2341)
T ss_pred             HHHhcccHHHHHHHHHHHHHHH--hhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhh
Confidence            3445567777777766666666  332110000    0  11122222222 12344554444433332     111111


Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE  200 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~  200 (542)
                      ....+.+..+...+.++.-.++..+...+++++..+|.+.-.......+..+-.+..+.-......+..-+..+....+.
T Consensus       561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence            33445556666667777788888888889989887775444333333333333333333333344444434433333333


Q ss_pred             HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHh
Q psy12594        201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMC  278 (542)
Q Consensus       201 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~  278 (542)
                      .....+ ...+..+...+.+.+..+...+..++..||...........+ ..++ +.+.+.+. +..-+..+.+++.++.
T Consensus       641 ~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~  718 (2341)
T KOG0891|consen  641 LISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE  718 (2341)
T ss_pred             HHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence            333333 344466666777778888889999999999876433333333 4555 56666554 5666778888998887


Q ss_pred             cCChHHHHH-HHhcCCHHHHHHhhhcCC-ccchHHHHHHHhHhhcCCh
Q psy12594        279 KHNLRLANL-VVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMSAQSE  324 (542)
Q Consensus       279 ~~~~~~~~~-~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~  324 (542)
                      ...--.... .....++..++..+.... ..++..++..++++...++
T Consensus       719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~  766 (2341)
T KOG0891|consen  719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP  766 (2341)
T ss_pred             cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence            543211110 011123334444444433 2366667777776554333

>KOG0413|consensus

Probab=84.91  E-value=5.9  Score=42.94  Aligned_cols=127  Identities=16%  Similarity=0.230  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh
Q psy12594        139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA  217 (542)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l  217 (542)
                      +.++..+.-+|++++-......+.     .+|.|++-|...+ ..+|.+..-+++.+|.+..    .++ ...+|.+...
T Consensus       945 ~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~-d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMT-DRYIPMIAAS 1014 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHH-HHhhHHHHHH
Confidence            467888888999999755554443     3888998887544 6677777777787877432    222 4567999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH--HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594        218 LNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL--AVEHLTYPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       218 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--L~~lL~~~~~~v~~~a~~~L~~L~~~  280 (542)
                      |.++++-+|+++.-.|.+|....-  .+   =.|.+-  .+.-|-+.+++++..+-.++..+-..
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~~--vK---w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGI--VK---WNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhhh--hh---cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999976532  11   123222  45555567889999998888877643

>KOG1993|consensus

Probab=84.40  E-value=64  Score=34.75  Aligned_cols=337  Identities=12%  Similarity=0.068  Sum_probs=173.1

Q ss_pred             hHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCC---hhhhhHhhcCChHH
Q psy12594         55 PSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQD---ERCAGLIEDKDLDS  129 (542)
Q Consensus        55 ~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~---~~~~~~~~~g~v~~  129 (542)
                      ..+|...+..++...+.+. .+.+...     ...++.++++. +..++..++..+.-+..+-   ++.-.-.-......
T Consensus       501 RiiRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~  575 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVL  575 (978)
T ss_pred             hHHHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHH
Confidence            4567777778888875444 4554443     34677888876 5677788888888776442   22212112345555


Q ss_pred             HHhhhcCC-CHHHHHHHHHHHHHhhcCChHHH-HHHHHc-CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594        130 IISSLHDF-DPDTRANAALALGGLAKDNKHFA-ERIVQC-GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS  206 (542)
Q Consensus       130 Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~  206 (542)
                      +..+++.- .-+.|...+..|+.+.....+.. .....- ..+|.|.+--+ +++-+|-+.+.+|.|+...-....    
T Consensus       576 lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS----  650 (978)
T KOG1993|consen  576 LFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQS----  650 (978)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCC----
Confidence            66666543 24556666666666553222211 111110 11233332222 346678888889999876211111    


Q ss_pred             hCCChHHHHHhhc---CC-C---HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH-HH
Q psy12594        207 DCDVIPLLIKALN---ND-E---VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR-DM  277 (542)
Q Consensus       207 ~~~~i~~L~~ll~---~~-~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~-~L  277 (542)
                       ...-+.+...+.   ++ +   .-+.+.+...-...-...+.....+.  +.+| +...+....+.++ .++.++. +.
T Consensus       651 -~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYi  726 (978)
T KOG1993|consen  651 -FEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYI  726 (978)
T ss_pred             -ccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHH
Confidence             112233333332   22 2   22445554443333333333333333  4566 6666665544333 2233322 22


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhh-cCCChhhHHHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTIL-QCPHKEQLQVAAA  356 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~  356 (542)
                      --.++.... ....|++..+..++.+-..+-....+.++..+...++ ........++++.+..-+ ...+.+.+-..-+
T Consensus       727 lLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl  804 (978)
T KOG1993|consen  727 LLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYL  804 (978)
T ss_pred             hhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHH
Confidence            222333222 2234667778888877666666667777776666555 333445556777765444 3333356666677


Q ss_pred             HHHHHhhcCChHHHHHHHHc-C--------ChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        357 WTLGQIGKHSVDNVTALCEE-N--------VLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       357 ~~L~~l~~~~~~~~~~l~~~-~--------~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ..++.+.-.+++....++.. .        .+..-+.+..+- ++++-|+--+-|+..+..
T Consensus       805 ~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I-~~~k~rKl~~LalsSll~  864 (978)
T KOG1993|consen  805 LVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHI-NHPKDRKLNTLALSSLLR  864 (978)
T ss_pred             HHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccC-CCHHHhhHHHHHHHHHhc
Confidence            77778777788766666542 1        111112222222 244566656666666653

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.31  E-value=28  Score=30.62  Aligned_cols=144  Identities=10%  Similarity=0.049  Sum_probs=89.7

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594        210 VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV  288 (542)
Q Consensus       210 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  288 (542)
                      .++.++++..+++..++..|+..+.-+.+.+--...     ..+| |+.+..++++.++..|...+..+....+.....-
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            346777788889999999999999988776432222     5788 9999999999999999999999987666554432


Q ss_pred             HhcCCHHHHHHhhhc--CCcc--c---hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-------hhhHHHH
Q psy12594        289 VLAGGLDGLLRLIDC--NGGY--N---SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-------KEQLQVA  354 (542)
Q Consensus       289 ~~~~~i~~Lv~lL~~--~~~~--~---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v~~~  354 (542)
                      .. .++..-..+-..  ++..  .   ....+..+..+..++...+..+     +..|++.+....       ...-...
T Consensus        84 ~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   84 YS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence            22 233333333322  1111  1   4455556666666555555544     344444444321       2233445


Q ss_pred             HHHHHHHhhc
Q psy12594        355 AAWTLGQIGK  364 (542)
Q Consensus       355 a~~~L~~l~~  364 (542)
                      ..++.-|++.
T Consensus       158 ~~Fla~nLA~  167 (187)
T PF12830_consen  158 LLFLAENLAT  167 (187)
T ss_pred             HHHHHHHHhc
Confidence            6666666654

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=83.80  E-value=30  Score=35.95  Aligned_cols=172  Identities=17%  Similarity=0.196  Sum_probs=99.9

Q ss_pred             cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-----------cCCHHHHHHHHHHHHHH--hc-CCh
Q psy12594         51 ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-----------KQNKHYKKTALHMLTCV--AQ-QDE  116 (542)
Q Consensus        51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-----------~~~~~~~~~a~~~L~~l--~~-~~~  116 (542)
                      .+.+..+...|-..|.++.  ..      +-+...+..|+.+..           ..++.+|...+..|.+-  +. ..+
T Consensus       247 ad~~~~V~~~ae~~LKr~~--~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~  318 (501)
T PF13001_consen  247 ADSNSSVSDRAEDLLKRLS--VS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFP  318 (501)
T ss_pred             eCCcchHHHHHHHHHhhcC--CC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCc
Confidence            4556788888999999998  33      112224445555433           24567777777776662  11 122


Q ss_pred             hhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHH---HHhhcCC-hHHH---HHHHHcCChHHHHH----hccCCCHhH
Q psy12594        117 RCAGLIEDKDLDSIISSLHDF--DPDTRANAALAL---GGLAKDN-KHFA---ERIVQCGALPPLVQ----ILASPQLSL  183 (542)
Q Consensus       117 ~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L---~~l~~~~-~~~~---~~i~~~g~i~~L~~----ll~~~~~~~  183 (542)
                              ..+..+...+.+.  +..++..++..+   ....... +...   ...+..++.|.+-.    --...+..+
T Consensus       319 --------~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~l  390 (501)
T PF13001_consen  319 --------NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIEL  390 (501)
T ss_pred             --------cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHH
Confidence                    2333344444444  455665655555   3333222 2211   22223344444410    011235789


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594        184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  240 (542)
                      |..+..+|+.|+...|....  -+.+.+..|..-|.+++++++...-.+|..++..-
T Consensus       391 R~~aYe~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af  445 (501)
T PF13001_consen  391 RSLAYETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF  445 (501)
T ss_pred             HHHHHHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence            99999999999997665431  12455677777777888999999999999887643

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=83.76  E-value=36  Score=31.42  Aligned_cols=87  Identities=21%  Similarity=0.264  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHH--------HHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q psy12594         98 KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPD--------TRANAALALGGLAKDNKHFAERIVQCGAL  169 (542)
Q Consensus        98 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~--------~~~~a~~~L~~l~~~~~~~~~~i~~~g~i  169 (542)
                      .....+++..|+.+-.          ..+.+.++++++.++..        +-+....++..++.            |-+
T Consensus        56 ~~~~~~a~~LLaq~re----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~  113 (249)
T PF06685_consen   56 YNLHFYALYLLAQFRE----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDI  113 (249)
T ss_pred             hHHHHHHHHHHHHHhh----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCH
Confidence            3445566666666542          34789999999765521        12222233333333            457


Q ss_pred             HHHHHhccCCC--HhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594        170 PPLVQILASPQ--LSLKHAAAFALDGIVKHSPELAESAS  206 (542)
Q Consensus       170 ~~L~~ll~~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~  206 (542)
                      +.|.+++.+++  .-+|..|+.+|..++..++..|..++
T Consensus       114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi  152 (249)
T PF06685_consen  114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI  152 (249)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            77888888875  78999999999999998888888776

The function of this family is unknown.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=83.73  E-value=7.2  Score=32.15  Aligned_cols=73  Identities=21%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC--HHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN--KHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~--~~~~~~a~~~L~~l~~  113 (542)
                      .++..|.+-|++.+|.++..|+..|..+.....+.....+...+++..|+.++....  +.++..++.++...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            455667788889999999999999999994334778888888899999999888633  4488888888888763

Unpublished observations. Domain of unknown function.

>KOG1525|consensus

Probab=83.51  E-value=95  Score=36.03  Aligned_cols=167  Identities=11%  Similarity=-0.001  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc
Q psy12594        225 VKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC  303 (542)
Q Consensus       225 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~  303 (542)
                      ++...-..+..|....+...     .+++| |-.-|...++.+|..|...++.+......... -.........+.-+.+
T Consensus       238 ~~~~~he~i~~L~~~~p~ll-----~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D  311 (1266)
T KOG1525|consen  238 LKIKYHELILELWRIAPQLL-----LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFND  311 (1266)
T ss_pred             hhhHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhcc
Confidence            44444445555554433222     37888 99999999999999999999998755433221 0012334455566667


Q ss_pred             CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q psy12594        304 NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL  383 (542)
Q Consensus       304 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~  383 (542)
                      ....+|..++....+.-..++........    -..+..  ...++.++.....++... .- ......+... .+..+.
T Consensus       312 ~~~~vR~~~v~~~~~~l~~~~~~~~~~~~----~~~l~~--~~~D~~~rir~~v~i~~~-~v-~~~~l~~~~~-ll~~~~  382 (1266)
T KOG1525|consen  312 ISVEVRMECVESIKQCLLNNPSIAKASTI----LLALRE--RDLDEDVRVRTQVVIVAC-DV-MKFKLVYIPL-LLKLVA  382 (1266)
T ss_pred             CChhhhhhHHHHhHHHHhcCchhhhHHHH----HHHHHh--hcCChhhhheeeEEEEEe-eh-hHhhhhhhHH-HHHHHH
Confidence            77889998888887776666655443221    111111  112333433222212111 11 1122222223 666667


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        384 SKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       384 ~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ..+.+..  ..||+.|...|..+-.
T Consensus       383 eR~rDKk--~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  383 ERLRDKK--IKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHhhhh--HHHHHHHHHHHHHHHH
Confidence            7777764  5899999999988854

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=83.24  E-value=3.9  Score=36.93  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhcCChhhhhHhhcC-------ChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHH-HHcCCh
Q psy12594         99 HYKKTALHMLTCVAQQDERCAGLIEDK-------DLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERI-VQCGAL  169 (542)
Q Consensus        99 ~~~~~a~~~L~~l~~~~~~~~~~~~~g-------~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i-~~~g~i  169 (542)
                      .-|..++.+|++++-.+.+...+...+       .+..|++++.. +++..|+.|+-.|.+++..+......+ .+.+.|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            458999999999987654444333332       45566677754 468999999999999998777665444 466889


Q ss_pred             HHHHHhccCCC
Q psy12594        170 PPLVQILASPQ  180 (542)
Q Consensus       170 ~~L~~ll~~~~  180 (542)
                      ..|+.++.+.+
T Consensus       219 ~~Li~FiE~a~  229 (257)
T PF12031_consen  219 SHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=82.99  E-value=52  Score=39.65  Aligned_cols=264  Identities=13%  Similarity=0.019  Sum_probs=136.2

Q ss_pred             CCCHHHHHHHHHHHHHhhcCC---hHHHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCCh
Q psy12594        136 DFDPDTRANAALALGGLAKDN---KHFAERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVI  211 (542)
Q Consensus       136 ~~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i  211 (542)
                      +.+..+...|+..|..++...   ++....-.+..++.++..++.. .+.++++..+.++.+|.....   .. +.. +-
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~n-IkS-GW 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NN-VKS-GW 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hh-hhc-Cc
Confidence            446778888888888877321   1111111222346667776654 458999999999999887322   22 223 34


Q ss_pred             HHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHh------hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhc
Q psy12594        212 PLLIKALN----NDEVNVKADAFLCLADIAKDSPSLASTIAD------GATTL-AVEHLTYP-HGLVQKNAATLLRDMCK  279 (542)
Q Consensus       212 ~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~  279 (542)
                      +.+..++.    +.++.+.+.+..++..+..+.-   ..+..      ...+. +..+.... +.++--.|+..|++++.
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence            44444443    5678888889888888775421   11110      12333 44444333 56677777777776521


Q ss_pred             CCh---------------------------HHHHHH-----HhcCCHHH---HHHhhhcCCccchHHHHHHHhHhhcC-C
Q psy12594        280 HNL---------------------------RLANLV-----VLAGGLDG---LLRLIDCNGGYNSLPAIMALGYMSAQ-S  323 (542)
Q Consensus       280 ~~~---------------------------~~~~~~-----~~~~~i~~---Lv~lL~~~~~~~~~~a~~~L~~l~~~-~  323 (542)
                      .-.                           .....+     .....+|.   |..+..++..+||..|+..|..+... .
T Consensus      1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence            100                           000000     00123333   33445667778999999988776532 1


Q ss_pred             hHHH---HHHHhhCchHHHHHhhcCC------------------C----hhhHHHHHHHHHHHhhcCChHHHHHHHH--c
Q psy12594        324 EQIA---EQIIELQGVGSLQTILQCP------------------H----KEQLQVAAAWTLGQIGKHSVDNVTALCE--E  376 (542)
Q Consensus       324 ~~~~---~~~~~~~~l~~L~~ll~~~------------------~----~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~  376 (542)
                      ....   ...+-.+++-++...++..                  +    ...+.+....+|.+++.--...-..+-.  .
T Consensus      1380 ~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076       1380 HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111   1122224555555554321                  0    0123333334444443222222222211  1


Q ss_pred             CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        377 NVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       377 ~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      +++..|...+..+  ++.+-+-+..+|.+|+..
T Consensus      1460 ~~l~ll~~ci~q~--n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076       1460 KVLMLLVSFIKRP--HQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred             HHHHHHHHHHcCc--hHHHHHHHHHHHHHHHHH
Confidence            3455555555544  467778888889988644

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=82.18  E-value=30  Score=30.12  Aligned_cols=73  Identities=18%  Similarity=0.192  Sum_probs=54.9

Q ss_pred             ChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594        168 ALPPLVQILASPQLSLKHAAAFALDGIVKH-SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP  241 (542)
Q Consensus       168 ~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  241 (542)
                      .+|.+++-|++.+...+..|...+..+... ..+..-.++ ...+..+...|.+.++++...++.+|..|...++
T Consensus        39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            478888888887777777777777777665 343333344 5667778888889999999999999999966544

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins

Probab=81.11  E-value=2.9  Score=32.61  Aligned_cols=41  Identities=22%  Similarity=0.258  Sum_probs=36.1

Q ss_pred             HHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHH
Q psy12594         19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQH   59 (542)
Q Consensus        19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~   59 (542)
                      ..++.+..++..|+.-..|++.|+++.|+.||.+++.++..
T Consensus        65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai  105 (108)
T PF08216_consen   65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI  105 (108)
T ss_pred             HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence            34788999999999999999999999999999988876654

A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=80.85  E-value=3.3  Score=37.38  Aligned_cols=81  Identities=22%  Similarity=0.252  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhHccCChHHHHHHHhcCc-------HHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhh--HhhcC
Q psy12594         56 SIQHAALATLGKLMCAKHVDIRQEVLERNL-------VALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAG--LIEDK  125 (542)
Q Consensus        56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~-------l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~g  125 (542)
                      .-|..|+++|++|+  ..+.+.+.+...+-       +..|++.+. .+++..|+.|+..|.+++..++....  -.+.+
T Consensus       139 SPqrlaLEaLcKLs--V~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLS--VIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhh--eeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            45889999999999  66666555554443       334444555 37789999999999999998877776  35678


Q ss_pred             ChHHHHhhhcCCC
Q psy12594        126 DLDSIISSLHDFD  138 (542)
Q Consensus       126 ~v~~Lv~lL~~~~  138 (542)
                      .+..|+.++.+.+
T Consensus       217 ~i~~Li~FiE~a~  229 (257)
T PF12031_consen  217 CISHLIAFIEDAE  229 (257)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999986554

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	542
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		6e-07
4b8j_A	528	Rimp_alpha1a Length = 528		8e-06
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		9e-06
2yns_A	490	Rimp_alpha_b54nls Length = 490		1e-05
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-05
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-05
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		7e-05
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		9e-05
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-04
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-04
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-04
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-04
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-04

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 2/194 (1%)
Query: 89  VLKDLTKQNKHYKKTALHMLTCVAQQ-DERCAGLIEDKDLDSIISSLHDFDPDTRXXXXX 147
           +++ L   ++   ++AL  L+ +A   +E+   +I+   L +++  L   +         
Sbjct: 17  MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 148 XXXXXXKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD 207
                        + ++  GALP LVQ+L+SP   +   A +AL  I     E  ++  D
Sbjct: 77  ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 208 CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHL-TYPHGLV 266
              +P L++ L++    +  +A   L++IA         + +     A+E L + P+  +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKI 196
Query: 267 QKNAATLLRDMCKH 280
           QK A   L  +  H
Sbjct: 197 QKEAQEALEKIQSH 210

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 161 ERIVQCGALPPLVQILAS---PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217
           E ++Q G +P  VQ L     PQL  +  AA+AL  I   + E  +   D   +P+ +K 
Sbjct: 111 EEVIQSGVVPRFVQFLTREDFPQLQFE--AAWALTNIASGTSENTKVVIDHGAVPIFVKL 168
Query: 218 LNNDEVNVKADAFLCLADIAKDSPSLAS-TIADGATTLAVEHLTYPHGL-VQKNAATLLR 275
           L +   +V+  A   L ++A DSP      +A+GA    +  L     L + +NA   L 
Sbjct: 169 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228
Query: 276 DMCK 279
           + C+
Sbjct: 229 NFCR 232

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
           ++  GALP LVQ+L+SP   +   A +AL  I     E  ++  D   +P L++ L++  
Sbjct: 92  VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 223 VNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHL-TYPHGLVQKNAATLLRDMCKH 280
             +  +A   L++IA         + +      +E L ++ +  +QK A   L  +  H
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 161 ERIVQCGALPPLVQILAS---PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217
           E ++Q G +P  VQ L     PQL  +  AA+AL  I   + E  +   D   +P+ +K 
Sbjct: 73  EEVIQSGVVPRFVQFLTREDFPQLQFE--AAWALTNIASGTSENTKVVIDHGAVPIFVKL 130
Query: 218 LNNDEVNVKADAFLCLADIAKDSPSLAS-TIADGATTLAVEHLTYPHGL-VQKNAATLLR 275
           L +   +V+  A   L ++A DSP      +A+GA    +  L     L + +NA   L 
Sbjct: 131 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 190
Query: 276 DMCK 279
           + C+
Sbjct: 191 NFCR 194

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
           ++  GALP LVQ+L+SP   +   A +AL  I     E  ++  D   +P L++ L++  
Sbjct: 92  VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 223 VNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHL-TYPHGLVQKNAATLLRDMCKH 280
             +  +A   L++IA         + +      +E L ++ +  +QK A   L  +  H
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
           D     + ++  GALP LVQ+L+SP   +   A +AL  I     E  ++  D   +P L
Sbjct: 42  DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATL 273
           ++ L++    +  +A   L++IA         + D GA    V+ L+ P+  + + A   
Sbjct: 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161
Query: 274 LRDMC 278
           L ++ 
Sbjct: 162 LSNIA 166

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
           ++Q G +P LV+ +   Q   L+  AA+AL  I   +    +   D D +PL I+ L   
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185
Query: 222 EVNVKADAFLCLADIAKDS 240
            V VK  A   L ++A DS
Sbjct: 186 SVEVKEQAIWALGNVAGDS 204

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
           ++Q G +P LV+ +   Q   L+  AA+AL  I   +    +   D D +PL I+ L   
Sbjct: 39  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 222 EVNVKADAFLCLADIAKDS 240
            V VK  A   L ++A DS
Sbjct: 99  SVEVKEQAIWALGNVAGDS 117

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
           ++Q G +P LV+ +   Q   L+  AA+AL  I   +    +   D D +PL I+ L   
Sbjct: 40  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 222 EVNVKADAFLCLADIAKDS 240
            V VK  A   L ++A DS
Sbjct: 100 SVEVKEQAIWALGNVAGDS 118

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
           ++Q G +P LV+ +   Q   L+  AA+AL  I   +    +   D D +PL I+ L   
Sbjct: 39  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 222 EVNVKADAFLCLADIAKDS 240
            V VK  A   L ++A DS
Sbjct: 99  SVEVKEQAIWALGNVAGDS 117

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
           ++Q G +P LV+ +   Q   L+  AA+AL  I   +    +   D D +PL I+ L   
Sbjct: 40  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 222 EVNVKADAFLCLADIAKDS 240
            V VK  A   L ++A DS
Sbjct: 100 SVEVKEQAIWALGNVAGDS 118

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
           ++Q G +P LV+ +   Q   L+  AA+AL  I   +    +   D D +PL I+ L   
Sbjct: 38  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 222 EVNVKADAFLCLADIAKDS 240
            V VK  A   L ++A DS
Sbjct: 98  SVEVKEQAIWALGNVAGDS 116

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
           ++Q G +P LV+ +   Q   L+  AA+AL  I   +    +   D D +PL I+ L   
Sbjct: 38  VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 222 EVNVKADAFLCLADIAKDS 240
            V VK  A   L ++A DS
Sbjct: 98  SVEVKEQAIWALGNVAGDS 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	542
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-44
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-30
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-42
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-39
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-31
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-09
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-18
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-35
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-18
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-09
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-34
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-30
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-34
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-24
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-17
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-16
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-27
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-15
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-11
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-16
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-10
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-18
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-16
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-14
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-13
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-10
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-15
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-14
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-10
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	9e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-14
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-06
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-10
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-08
3grl_A	651	General vesicular transport factor P115; vesicle t	5e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	4e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	7e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  161 bits (410), Expect = 3e-44
 Identities = 73/402 (18%), Positives = 152/402 (37%), Gaps = 9/402 (2%)

Query: 23  TMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHV-DIRQEVL 81
            M     + + +       +   ++ ++  K P  Q +A     KL+  +    I + + 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 82  ERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQD-ERCAGLIEDKDLDSIISSLHDFDP 139
              +VA  ++ L + +N   +  +  +LT +A  +  +   +I+   +   I  L     
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 140 DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHS 198
           D +  A  ALG +A D+    + ++ C  LPPL+Q+ +   +L++   A +AL  + +  
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVE 257
               E A     + +L   L   + +V ADA   L+ ++         + D G     VE
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241

Query: 258 HLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG 317
            L +    V   A   + ++   +     +++    L  LL L+          A   + 
Sbjct: 242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 318 YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQ-IGKHSVDNVTALCEE 376
            ++A +    + +I+     +L +ILQ       +  AAW +       S + +  L E 
Sbjct: 302 NITAGNRAQIQTVIDANIFPALISILQTAEFR-TRKEAAWAITNATSGGSAEQIKYLVEL 360

Query: 377 NVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
             +  L   +  T +   +     N L  ++   E   +   
Sbjct: 361 GCIKPLCDLL--TVMDSKIVQVALNGLENILRLGEQEAKRNG 400

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  123 bits (309), Expect = 1e-30
 Identities = 58/326 (17%), Positives = 120/326 (36%), Gaps = 16/326 (4%)

Query: 39  DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
               V + + LL+ +   +Q  A+  LG +        R  VL+ N++  +L+  +KQN+
Sbjct: 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNI-AGDSTMCRDYVLDCNILPPLLQLFSKQNR 163

Query: 99  H-YKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKDN 156
               + A+  L+ + +         +    L+ +   L   D D  A+A  AL  L+   
Sbjct: 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223

Query: 157 KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIK 216
               + ++  G    LV++L      +   A  A+  IV       +   +C  +  L+ 
Sbjct: 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283

Query: 217 ALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAA-TLL 274
            L++ + ++K +A   +++I   + +   T+ D       +  L       +K AA  + 
Sbjct: 284 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343

Query: 275 RDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQ--------- 325
                 +      +V  G +  L  L+          A+  L  +    EQ         
Sbjct: 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI 403

Query: 326 --IAEQIIELQGVGSLQTILQCPHKE 349
                 I E  G+  ++ +    ++E
Sbjct: 404 NPYCALIEEAYGLDKIEFLQSHENQE 429

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  158 bits (401), Expect = 1e-42
 Identities = 73/437 (16%), Positives = 164/437 (37%), Gaps = 18/437 (4%)

Query: 3   RKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNV-------VDLIVPLLADKVP 55
           RK+ ++  +   + R     T  A +D+        D          +  +   L     
Sbjct: 44  RKAKRD--EALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDM 101

Query: 56  SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQ 114
             Q +A     +++  +H      V++  +V  +++ + + Q +  +  A   LT +A  
Sbjct: 102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161

Query: 115 DERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLV 173
                 ++ D D +   I  L+    + +  A  ALG +A D+  + + ++QC A+ P++
Sbjct: 162 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL 221

Query: 174 QILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCL 233
            +  S + SL   A + L  + +      + +     +P L K + + +     DA   +
Sbjct: 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281

Query: 234 ADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAG 292
           + ++         + D       VE L++   LVQ  A   + ++   N     +V+ AG
Sbjct: 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341

Query: 293 GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352
            L  L  L+          A   +  ++A + +  + +I+   +  L  +L+    +  +
Sbjct: 342 VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK-TK 400

Query: 353 VAAAWTLGQI---GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409
             A W +      G    D +  L  +  +  L   +      + +     +AL  ++  
Sbjct: 401 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL--EIADNRIIEVTLDALENILKM 458

Query: 410 CENPKELEQMLLGNVSE 426
            E  KE   + +   ++
Sbjct: 459 GEADKEARGLNINENAD 475

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  143 bits (363), Expect = 1e-39
 Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 2/240 (0%)

Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHA 186
           L  +   L+  D   + +A      +  D     + ++  GALP LVQ+L+SP   +   
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST 246
           A +AL  I     E  ++  D   +P L++ L++    +  +A   L++IA         
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 247 IAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305
           + D GA    V+ L+ P+  + + A   L ++          V+ AG L  L++L+    
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193

Query: 306 GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH 365
                 A+ AL  +++   +  + + E   +  L+ +    + E++Q  A   L ++  H
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  120 bits (302), Expect = 4e-31
 Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 3/251 (1%)

Query: 32  STIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK 91
            + H     + +  +   L       Q +A     ++  +   +  Q V++   +  +++
Sbjct: 3   GSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQI-LSDGNEQIQAVIDAGALPALVQ 61

Query: 92  DLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALG 150
            L+  N+   + AL  L+ +A         + D   L +++  L   +      A  AL 
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 151 GLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDV 210
            +A       + ++  GALP LVQ+L+SP   +   A +AL  I     E  ++  D   
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181

Query: 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKN 269
           +P L++ L++    +  +A   L++IA         + + GA     +  ++ +  +QK 
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241

Query: 270 AATLLRDMCKH 280
           A   L  +  H
Sbjct: 242 AQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 44/177 (24%)

Query: 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQ 267
             +P + + LN+D++  +  A    + I  D       + D GA    V+ L+ P+  + 
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 268 KNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA 327
           + A   L ++          V+ AG L  L++L                  +S+ +EQI 
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQL------------------LSSPNEQIL 113

Query: 328 EQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
           ++                         A W L  I     + + A+ +   L  L+ 
Sbjct: 114 QE-------------------------ALWALSNIASGGNEQIQAVIDAGALPALVQ 145

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 288 VVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH 347
                 L  + + ++ +     L A      + +   +  + +I+   + +L  +L  P+
Sbjct: 8   HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 348 KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
            EQ+   A W L  I     + + A+ +   L  L+ 
Sbjct: 68  -EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  140 bits (353), Expect = 2e-35
 Identities = 64/429 (14%), Positives = 137/429 (31%), Gaps = 26/429 (6%)

Query: 37  LKDLNVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK 95
           ++   +V  IV  + +            TL  L  + H +    + +   +  ++K L  
Sbjct: 52  MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGS 109

Query: 96  QNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAK 154
                   A+  L  +    E     +     L  +++ L+  +    A     L  LA 
Sbjct: 110 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169

Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
            N+     I+  G    LV I+ +            +  ++        +  +   +  L
Sbjct: 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 229

Query: 215 IKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
              L +    +  +    L +++  +        +G     V+ L      V   AA +L
Sbjct: 230 GLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGIL 287

Query: 275 RDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL--PAIMALGYMSA---QSEQIAEQ 329
            ++  +N +   +V   GG++ L+R +   G    +  PAI AL ++++   ++E     
Sbjct: 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 347

Query: 330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389
           +    G+  +  +L  P    L  A    +  +      N   L E+  +  L+      
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQ--LLV 404

Query: 390 CVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRS 449
               + + +                     + G   EE++     A   IL  D   R  
Sbjct: 405 RAHQDTQRRTSMGGTQQQ-----------FVEGVRMEEIVEGCTGALH-ILARDVHNRIV 452

Query: 450 FVTSHCLRK 458
               + +  
Sbjct: 453 IRGLNTIPL 461

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  108 bits (271), Expect = 4e-25
 Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 2/225 (0%)

Query: 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
           +  +   A+P L ++L      + + AA  +  + K             ++  +++ + N
Sbjct: 8   DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 67

Query: 221 -DEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCK 279
            ++V         L +++     L +    G     V+ L  P   V   A T L ++  
Sbjct: 68  TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 127

Query: 280 HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSL 339
           H       V LAGGL  ++ L++             L  ++  +++    I+   G  +L
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187

Query: 340 QTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
             I++    E+L    +  L  +   S  N  A+ E   +  L  
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGL 231

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  105 bits (264), Expect = 3e-24
 Identities = 45/347 (12%), Positives = 105/347 (30%), Gaps = 41/347 (11%)

Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKH 185
           +  +   L+D D      AA+ +  L+K        +     +  +V+ + +   +    
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75

Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245
             A  L   + H  E   +      IP L+K L +   +V   A   L ++         
Sbjct: 76  CTAGTL-HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134

Query: 246 TIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN 304
            +   G     V  L   +          L+ +   N     +++ +GG   L+ ++   
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194

Query: 305 GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA--------- 355
                L     +  + +        I+E  G+ +L   L  P +  +Q            
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254

Query: 356 -----------------------------AWTLGQIGKHSVDNVTALCEENVLSTLLSKI 386
                                        A  L  +  ++  N   +C+   +  L+  +
Sbjct: 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314

Query: 387 TQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASIL 433
            +    +++      AL  L  + +  +  +  +  +    ++  +L
Sbjct: 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.5 bits (214), Expect = 5e-18
 Identities = 52/368 (14%), Positives = 106/368 (28%), Gaps = 30/368 (8%)

Query: 21  VQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEV 80
            + +   +   S    + +   +  +   L D    +    L TL  L  A       E 
Sbjct: 204 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 263

Query: 81  LERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDP- 139
           L   LV L L              L  LTC     +    + +   +++++ ++      
Sbjct: 264 LLGTLVQL-LGSDDINVVTCAAGILSNLTC--NNYKNKMMVCQVGGIEALVRTVLRAGDR 320

Query: 140 -DTRANAALALGGLA---KDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV 195
            D    A  AL  L    ++ +     +     LP +V++L  P       A   L   +
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380

Query: 196 KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLA 255
              P       +   IP L++ L     + +    +                        
Sbjct: 381 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME---------- 430

Query: 256 VEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA 315
                     + +     L  + +       ++     +   ++L+          A   
Sbjct: 431 ---------EIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 480

Query: 316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCE 375
           L  + AQ ++ AE I        L  +L   + E +   AA  L ++ +    +      
Sbjct: 481 LCEL-AQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMSEDKPQDYKKRLS 538

Query: 376 ENVLSTLL 383
             + S+L 
Sbjct: 539 VELTSSLF 546

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.1 bits (213), Expect = 6e-18
 Identities = 51/330 (15%), Positives = 99/330 (30%), Gaps = 28/330 (8%)

Query: 39  DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
              ++  +V LL     ++   A   L  L    +   +  V +   +  +++ + +   
Sbjct: 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGD 319

Query: 99  HYKKT-----ALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGL 152
               T     AL  LT   Q+ E     +     L  ++  LH         A + L   
Sbjct: 320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 379

Query: 153 AKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK----HSPELAESAS-- 206
                     + + GA+P LVQ+L       +   +               E+ E  +  
Sbjct: 380 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439

Query: 207 ---------------DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA 251
                            + IPL ++ L +   N++  A   L ++A+D  +  +  A+GA
Sbjct: 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA 499

Query: 252 TTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLP 311
           T    E L   +  V   AA +L  M +   +     +       L R         +  
Sbjct: 500 TAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADL 559

Query: 312 AIMALGYMSAQSEQIAEQIIELQGVGSLQT 341
            +           +  +        G    
Sbjct: 560 GLDIGAQGEPLGYRQDDPSYRSFHSGGYGQ 589

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  139 bits (352), Expect = 4e-35
 Identities = 60/391 (15%), Positives = 135/391 (34%), Gaps = 16/391 (4%)

Query: 37  LKDLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK 95
           ++   +V  IV  +              TL  L  + H +    + +   +  ++  L  
Sbjct: 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL--SHHREGLLAIFKSGGIPALVNMLGS 245

Query: 96  QNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAK 154
                   A+  L  +    E     +     L  +++ L+  +    A     L  LA 
Sbjct: 246 PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305

Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
            N+     I+  G    LV I+ +            +  ++        +  +   +  L
Sbjct: 306 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 365

Query: 215 IKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
              L +    +  +    L +++ D+ +    +     TL V+ L      V   AA +L
Sbjct: 366 GLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGLLGTL-VQLLGSDDINVVTCAAGIL 423

Query: 275 RDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL--PAIMALGYMSA---QSEQIAEQ 329
            ++  +N +   +V   GG++ L+R +   G    +  PAI AL ++++    +E     
Sbjct: 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483

Query: 330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389
           +    G+  +  +L  P    L  A    +  +      N   L E+  +  L+    Q 
Sbjct: 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLV----QL 538

Query: 390 CVSDNLKSKCKNALNILIPKCENPKELEQML 420
            V  +  ++ + ++     +      +E+++
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  113 bits (283), Expect = 2e-26
 Identities = 47/385 (12%), Positives = 109/385 (28%), Gaps = 53/385 (13%)

Query: 130 IISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAA 188
           +   L+D D      AA+ +  L+K        +     +  +V+ + +   +      +
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214

Query: 189 FALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA 248
             L   + H  E   +      IP L+  L +   +V   A   L ++          + 
Sbjct: 215 GTL-HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273

Query: 249 D-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY 307
             G     V  L   +          L+ +   N     +++ +GG   L+ ++      
Sbjct: 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 333

Query: 308 NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA----------- 356
             L     +  + +        I+E  G+ +L   L  P +  +Q               
Sbjct: 334 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393

Query: 357 ---------------------------WTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389
                                        L  +  ++  N   +C+   +  L+  + + 
Sbjct: 394 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 453

Query: 390 CVSDNLKSKCKNALNILIPKCENPKELEQM------------LLGNVSEELLASILCAFA 437
              +++      AL  L  + ++ +  +              LL   S   L        
Sbjct: 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513

Query: 438 KILPCDPVARRSFVTSHCLRKVQEI 462
           + L   P           + ++ ++
Sbjct: 514 RNLALCPANHAPLREQGAIPRLVQL 538

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 88.2 bits (218), Expect = 2e-18
 Identities = 45/352 (12%), Positives = 104/352 (29%), Gaps = 32/352 (9%)

Query: 39  DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
           +   +  +   L D    +    L TL  L         ++     L+  +++ L   + 
Sbjct: 358 EAGGMQALGLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDI 413

Query: 99  HYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDF--DPDTRANAALALGGLA-- 153
           +    A  +L+ +   + +   ++     +++++ ++       D    A  AL  L   
Sbjct: 414 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473

Query: 154 -KDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212
            +D +     +     LP +V++L  P       A   L   +   P       +   IP
Sbjct: 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 533

Query: 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
            L++ L     + +    +               I +                       
Sbjct: 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC-------------------TG 574

Query: 273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
            L  + +       ++     +   ++L+          A   L  ++   E  AE I  
Sbjct: 575 ALHILARDIHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEA 632

Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
                 L  +L   + E +   AA  L ++ +    +        + S+L  
Sbjct: 633 EGATAPLTELLHSRN-EGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 63.5 bits (154), Expect = 1e-10
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 26/216 (12%)

Query: 28  ADKPSTIHFLKDLNVVDLIVPLLADKVP-SIQHAALATLGKLMCAKHVDIRQEVLERNLV 86
            D     + ++    + ++V LL       +  A +  +     A        + E+  +
Sbjct: 475 QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN--LALCPANHAPLREQGAI 532

Query: 87  ALVLKDLTKQNKHYKKTALHMLTCVAQQD--------ERCAG--------------LIED 124
             +++ L + ++  ++      T     +        E C G              +   
Sbjct: 533 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592

Query: 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLK 184
             +   +  L+    + +  AA  L  LA+D +  AE I   GA  PL ++L S    + 
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELLHSRNEGVA 651

Query: 185 HAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
             AA  L  + +  P+  +     ++   L +    
Sbjct: 652 TYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPM 687

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 58.9 bits (142), Expect = 3e-09
 Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 6/192 (3%)

Query: 197 HSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKD--SPSLASTIADGATT 253
            +    E+  +   IP       +   V   A+    L     +  +    + +A  A  
Sbjct: 94  RAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIP 153

Query: 254 LAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLI-DCNGGYNSLPA 312
              + L     +V   AA ++  + K       ++     +  ++R + + N    +   
Sbjct: 154 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 213

Query: 313 IMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA 372
              L  +S    +    I +  G+ +L  +L  P    +   A  TL  +  H      A
Sbjct: 214 SGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDS-VLFHAITTLHNLLLHQEGAKMA 271

Query: 373 LCEENVLSTLLS 384
           +     L  +++
Sbjct: 272 VRLAGGLQKMVA 283

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  135 bits (342), Expect = 1e-34
 Identities = 69/463 (14%), Positives = 144/463 (31%), Gaps = 64/463 (13%)

Query: 43  VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKK 102
           V+ IV  +       Q  A     KL+  +       ++   L+   +  L K +     
Sbjct: 59  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD----- 113

Query: 103 TALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162
                                                  +  +A AL  +A       + 
Sbjct: 114 -----------------------------------CSPIQFESAWALTNIASGTSEQTKA 138

Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
           +V  GA+P  + +LASP   +   A +AL  I        +       I  L+  L   +
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198

Query: 223 VNVKADAFLC-----LADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATLLRD 276
           ++  A  +L      L+++ ++        A        V  L +    V  ++   +  
Sbjct: 199 LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258

Query: 277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGV 336
           +         +VV  G +  L++L+         PA+ A+G +   +++  +++I+   +
Sbjct: 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 318

Query: 337 GSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS---------KIT 387
               ++L  P K  +Q  A WT+  I     D +  +    ++  L+          +  
Sbjct: 319 AVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377

Query: 388 QTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASI-----LCAFAKILPC 442
                 N  S       + +  C   + L  +L    ++ +   +     +   A+ L  
Sbjct: 378 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437

Query: 443 DPVARRSFVTSHCLRKVQEI--EPTPEIAPH-LKTINACFPNE 482
                        L K++ +       +    L  I   F  E
Sbjct: 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  122 bits (306), Expect = 6e-30
 Identities = 56/332 (16%), Positives = 123/332 (37%), Gaps = 15/332 (4%)

Query: 39  DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
           D   +   + LLA     I   A+  LG +        R  V++   +  +L  L   + 
Sbjct: 141 DGGAIPAFISLLASPHAHISEQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDL 199

Query: 99  HYKKTALH-----MLTCVAQQDERCAGLIEDKDLDSIISSL-HDFDPDTRANAALALGGL 152
                         L+ + +       L   + +   +  L H  DP+  A++  A+  L
Sbjct: 200 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259

Query: 153 AKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212
                   E +V+ G +P LV++L + +L +   A  A+  IV  + E  +   D   + 
Sbjct: 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319

Query: 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAA 271
           +    L N + N++ +A   +++I          + + G     V  L+      QK AA
Sbjct: 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379

Query: 272 TLLRDMC-KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM------SAQSE 324
             + +      +     +V  G ++ L+ L+           + A+  +        ++E
Sbjct: 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETE 439

Query: 325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAA 356
           +++  I E  G+  ++ + +  ++   + +  
Sbjct: 440 KLSIMIEECGGLDKIEALQRHENESVYKASLN 471

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  115 bits (288), Expect = 2e-27
 Identities = 53/319 (16%), Positives = 117/319 (36%), Gaps = 14/319 (4%)

Query: 111 VAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLA-KDNKHFAERIVQCGAL 169
            A  D        +  ++ I+  ++  + +++  A  A   L  ++ +   + I++ G +
Sbjct: 43  KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI 102

Query: 170 PPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKAD 228
           P  V  L  +    ++  +A+AL  I   + E  ++  D   IP  I  L +   ++   
Sbjct: 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQ 162

Query: 229 AFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQK-----NAATLLRDMCKHNL 282
           A   L +IA D  +    +   GA    +  L  P           N    L ++C++  
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222

Query: 283 RLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI 342
               L  +   L  L+RL+  N       +  A+ Y++    +  E +++   V  L  +
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282

Query: 343 LQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNA 402
           L       +   A   +G I   + +    + +   L+   S      +++   +  K A
Sbjct: 283 LGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS-----LLTNPKTNIQKEA 336

Query: 403 LNILIPKCENPKELEQMLL 421
              +       ++  Q ++
Sbjct: 337 TWTMSNITAGRQDQIQQVV 355

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  134 bits (340), Expect = 3e-34
 Identities = 63/401 (15%), Positives = 140/401 (34%), Gaps = 16/401 (3%)

Query: 29  DKPSTIHFLKDLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVA 87
            + S    ++   +V  IV  +              TL  L  + H +    + +   + 
Sbjct: 47  KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIP 104

Query: 88  LVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAA 146
            ++K L          A+  L  +    E     +     L  +++ L+  +    A   
Sbjct: 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 164

Query: 147 LALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS 206
             L  LA  N+     I+  G    LV I+ +            +  ++        +  
Sbjct: 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 224

Query: 207 DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLV 266
           +   +  L   L +    +  +    L +++ D+ +    +     TL V+ L      V
Sbjct: 225 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGLLGTL-VQLLGSDDINV 282

Query: 267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL--PAIMALGYMSA--- 321
              AA +L ++  +N +   +V   GG++ L+R +   G    +  PAI AL ++++   
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342

Query: 322 QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLST 381
           ++E     +    G+  +  +L  P    L  A    +  +      N   L E+  +  
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPR 401

Query: 382 LLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLG 422
           L+    Q  V  +  ++ + ++     +      +E+++ G
Sbjct: 402 LV----QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  111 bits (279), Expect = 3e-26
 Identities = 52/308 (16%), Positives = 106/308 (34%), Gaps = 13/308 (4%)

Query: 148 ALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD 207
           A+  L        +  +   A+P L ++L      + + AA  +  + K           
Sbjct: 1   AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 208 CDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLV 266
             ++  +++ + N ++V         L +++     L +    G     V+ L  P   V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQI 326
              A T L ++  H       V LAGGL  ++ L++             L  ++  +++ 
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 327 AEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKI 386
              I+   G  +L  I++    E+L    +  L  +   S  N  A+ E   +  L   +
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL 236

Query: 387 TQTCVSDNLKSKCKNALNILIPKCENPKELEQM------LLGNVSEELLASILCAFAKIL 440
             T  S  L   C   L  L       + +E +      LLG+    ++       + + 
Sbjct: 237 --TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 441 PCDPVARR 448
             +   + 
Sbjct: 295 CNNYKNKM 302

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  104 bits (262), Expect = 4e-24
 Identities = 46/347 (13%), Positives = 106/347 (30%), Gaps = 41/347 (11%)

Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKH 185
           +  +   L+D D      AA+ +  L+K        +     +  +V+ + +   +    
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245
             A  L  +  H  E   +      IP L+K L +   +V   A   L ++         
Sbjct: 79  CTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137

Query: 246 TIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN 304
            +   G     V  L   +          L+ +   N     +++ +GG   L+ ++   
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197

Query: 305 GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVA---------- 354
                L     +  + +        I+E  G+ +L   L  P +  +Q            
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257

Query: 355 ----------------------------AAWTLGQIGKHSVDNVTALCEENVLSTLLSKI 386
                                       AA  L  +  ++  N   +C+   +  L+  +
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317

Query: 387 TQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASIL 433
            +    +++      AL  L  + +  +  +  +  +    ++  +L
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 82.9 bits (205), Expect = 5e-17
 Identities = 51/348 (14%), Positives = 103/348 (29%), Gaps = 32/348 (9%)

Query: 21  VQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEV 80
            + +   +   S    + +   +  +   L D    +    L TL  L  A       E 
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 266

Query: 81  LERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDP 139
           L   LV L    L   + +    A  +L+ +   + +   ++     +++++ ++     
Sbjct: 267 LLGTLVQL----LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322

Query: 140 --DTRANAALALGGLAKDNKHF---AERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194
             D    A  AL  L   ++        +     LP +V++L  P       A   L   
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382

Query: 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL 254
           +   P       +   IP L++ L     + +    +               I +G T  
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442

Query: 255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIM 314
                   H  +                     +     +   ++L+          A  
Sbjct: 443 LHILARDVHNRIV--------------------IRGLNTIPLFVQLLYSPIENIQRVAAG 482

Query: 315 ALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI 362
            L  + AQ ++ AE I        L  +L   + E +   AA  L ++
Sbjct: 483 VLCEL-AQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 80.6 bits (199), Expect = 3e-16
 Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 28/285 (9%)

Query: 42  VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
           ++  +V LL     ++   A   L  L    +   +  V +   +  +++ + +      
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325

Query: 102 KT-----ALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKD 155
            T     AL  LT   Q+ E     +     L  ++  LH         A + L      
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLI 215
                  + + GA+P LVQ+L       +   +              E            
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME------------ 433

Query: 216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLR 275
                    +       L  +A+D  +           L V+ L  P   +Q+ AA +L 
Sbjct: 434 --------EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320
           ++ +     A  +   G    L  L+       +  A   L  MS
Sbjct: 486 ELAQDK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  109 bits (274), Expect = 1e-27
 Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 1/197 (0%)

Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHA 186
           L  ++  L+  D     +A   L  +A       + ++  GALP LVQ+L+SP   +   
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST 246
           A +AL  I     E  ++  D   +P L++ L++    +  +A   L++IA         
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 247 IAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305
           + D GA    V+ L+ P+  + + A   L ++          V  AG L+ L +L     
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193

Query: 306 GYNSLPAIMALGYMSAQ 322
                 A  AL  + + 
Sbjct: 194 EKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 42/200 (21%)

Query: 39  DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
           D   +  +V LL+     I   AL  L  +  +   +  Q V++                
Sbjct: 52  DAGALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQIQAVID---------------- 94

Query: 99  HYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKH 158
                               AG +      +++  L   +      A  AL  +A     
Sbjct: 95  --------------------AGALP-----ALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 159 FAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL 218
             + ++  GALP LVQ+L+SP   +   A +AL  I     E  ++  +   +  L +  
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189

Query: 219 NNDEVNVKADAFLCLADIAK 238
           +++   ++ +A   L  +  
Sbjct: 190 SHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 256 VEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA 315
           V+ L  P     ++A   L  +          V+ AG L  L++L+          A+ A
Sbjct: 18  VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77

Query: 316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCE 375
           L  +++   +  + +I+   + +L  +L  P+++ +   A W L  I     + + A+ +
Sbjct: 78  LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVID 136

Query: 376 ENVLSTLLS 384
              L  L+ 
Sbjct: 137 AGALPALVQ 145

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 92.6 bits (229), Expect = 8e-20
 Identities = 47/295 (15%), Positives = 93/295 (31%), Gaps = 8/295 (2%)

Query: 37  LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
           L +  +   +  L   +  + Q      L  +      ++R +V++   V  +L+   + 
Sbjct: 491 LANEGITTALCALAKTESHNSQELIARVLNAV--CGLKELRGKVVQEGGVKALLRMALEG 548

Query: 97  NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL----HDFDPDTRANAALALGGL 152
            +  K+ A   L  +             + LD I   L     D        + +AL  L
Sbjct: 549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608

Query: 153 AKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212
           A  N+   +RI++   +  +   L    L L  AAA  L  +V     +     + D + 
Sbjct: 609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668

Query: 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTLAVEHLTYPHGLVQKNA 270
            L     +++          LA I   S      I        +    +  P   VQ   
Sbjct: 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728

Query: 271 ATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQ 325
             ++ +M      +A  +     ++ L  L        +    +A   ++A    
Sbjct: 729 IVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 82.2 bits (202), Expect = 1e-16
 Identities = 62/512 (12%), Positives = 142/512 (27%), Gaps = 67/512 (13%)

Query: 7   KNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLG 66
              ++   R  +     ++   D  + +  +    ++ +I+ +        Q  A   L 
Sbjct: 258 APDMESKVRVTVAITALLNGPLDVGNQV--VAREGILQMILAMATTDDELQQRVACECLI 315

Query: 67  KLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL--IED 124
                K    + + L    V ++ +    +N   +  AL  L  +     + A +    D
Sbjct: 316 AASSKKD---KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGD 372

Query: 125 KDLDSIISSLHDF------DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178
                +  +   F      D D R  AA  L  L  D +   + I    ++  L+ +   
Sbjct: 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG 432

Query: 179 PQLSLKHAAAFALDGIVKHS------PELAESAS-------------------------- 206
              S  +        +          PE+ E A                           
Sbjct: 433 GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492

Query: 207 DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLV 266
           +  +   L      +  N +      L  +          + +G     +          
Sbjct: 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG 552

Query: 267 QKNAATLLRDMC--KHNLRLANLVVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMSAQS 323
           +++A   L  +    +     +       +  LL L+  +     +  ++MAL  +++ +
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612

Query: 324 EQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
           E + ++II+ QGV  ++  L   H   L  AAA  L  +              + +  L 
Sbjct: 613 ESVRQRIIKEQGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA 671

Query: 384 SKITQTCVSDNLKSKCKNALNILIPKCENPKELEQM-------------LLGNVSEELLA 430
                    D  +         L        +  +              L+ N S  +  
Sbjct: 672 L-----LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH 726

Query: 431 SILCAFAKILPCDPVARRSFVTSHCLRKVQEI 462
             +     ++       +    +  +  +  +
Sbjct: 727 RGIVIILNMINAGEEIAKKLFETDIMELLSGL 758

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 82.2 bits (202), Expect = 1e-16
 Identities = 61/409 (14%), Positives = 127/409 (31%), Gaps = 62/409 (15%)

Query: 29  DKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVAL 88
           D       ++D   +  ++ L      S  +  + T   L  A          E+  +  
Sbjct: 409 DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY---------EKQEMLP 459

Query: 89  VLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALA 148
            + +L K  K       H L  V   ++R   L  +    ++ +       +++   A  
Sbjct: 460 EMIELAKFAKQ-HIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARV 518

Query: 149 LGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI-VKHSPELAESASD 207
           L  +    +    ++VQ G +  L+++        K  A  AL  I +  +PE++ S   
Sbjct: 519 LNAVCGLKEL-RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577

Query: 208 C-DVIPLLIKALNNDEVNV-KADAFLCLADIAKDSPSLASTI-ADGATTLAVEHLTYPHG 264
             DVI  L+  L  D   +   ++ + L ++A  + S+   I  +   +    +L   H 
Sbjct: 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL 637

Query: 265 LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE 324
            + + AA  L ++      +         +  L  L +                      
Sbjct: 638 YLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-------------------- 677

Query: 325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
                                   E+   A A  L  I   SV     +       + L 
Sbjct: 678 -----------------------DEETATACAGALAIITSVSVKCCEKILAIA---SWLD 711

Query: 385 KITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASIL 433
            +     + +   +    + I++      +E+ + L      ELL+ + 
Sbjct: 712 ILHTLIANPSPAVQ-HRGIVIILNMINAGEEIAKKLFETDIMELLSGLG 759

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 83.9 bits (207), Expect = 5e-18
 Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 5/203 (2%)

Query: 55  PSIQHAALATLGKLMCAKHVDIRQEVLERN-LVALVLKDLTKQNKHYKKTALHMLTCVAQ 113
              +  AL  L      +++D   +  + + +  LV + L       +  A  ++   +Q
Sbjct: 54  QQEREGALELL--ADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ 111

Query: 114 QDERCAGLIEDKDLDSIISSL--HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP 171
                   +        +  L   D     R  A  A+  L ++ +    + ++      
Sbjct: 112 NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171

Query: 172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFL 231
           L++ +      LK  +AF L  ++   PE   +     ++  L+  +  +          
Sbjct: 172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLG 231

Query: 232 CLADIAKDSPSLASTIADGATTL 254
            L  +  D P       +    L
Sbjct: 232 ALCSLVTDFPQGVRECREPELGL 254

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 5/176 (2%)

Query: 212 PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTLAVEHLTYPHGLVQKN 269
           P   +A    +   +  A   LAD+  ++   A+      G   L   +L      ++  
Sbjct: 43  PTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWR 101

Query: 270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLP-AIMALGYMSAQSEQIAE 328
           AA L+    ++   +   V+  G L  LLRL+D +        A+ A+  +  + E    
Sbjct: 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161

Query: 329 QIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
           Q + L G   L   +Q    ++L+V +A+ L  +     ++   LC   ++  L++
Sbjct: 162 QFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 85.0 bits (210), Expect = 9e-18
 Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 24/334 (7%)

Query: 52  DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCV 111
           DK    +   L  L ++          +      +      +    +H    A+ +L  +
Sbjct: 116 DKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175

Query: 112 AQQDE-----RCAGLIE------DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA 160
           +  +E        G ++        D +    +   +    R  A +AL  L   +    
Sbjct: 176 SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 235

Query: 161 ERIVQ-CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA-SDCDVIPLLIKAL 218
             +    G +  LV  L S    L+   A  L  +   +   ++    +   +  L++  
Sbjct: 236 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295

Query: 219 -NNDEVNVKADAFLCLADIAKDSPSLASTI--ADGATTLAVEHLTYPHG----LVQKNAA 271
               + +        L +++       + I   DGA    V  LTY        + ++  
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355

Query: 272 TLLRDMCKHNLRLAN---LVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAE 328
            +LR++        +   ++     L  LL+ +  +       A   L  +SA++ +  E
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415

Query: 329 QIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI 362
            + ++  V  L+ ++   HK  + + +A  L  +
Sbjct: 416 ALWDMGAVSMLKNLIHSKHKM-IAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 80.0 bits (197), Expect = 3e-16
 Identities = 49/335 (14%), Positives = 110/335 (32%), Gaps = 30/335 (8%)

Query: 78  QEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIE-----DKDLDSIIS 132
           +E   R   AL     ++ +    +  + +L  + Q    C    E     +  +D   +
Sbjct: 96  KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKN 155

Query: 133 SLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-----------L 181
            +          A   L  L+ D +H    + + G L  + ++L               +
Sbjct: 156 PMPAPVEHQICPAVCVLMKLSFDEEH-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSI 214

Query: 182 SLKHAAAFALDGIVKHSPEL-AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240
           +L+  A  AL  +        A   S    +  L+  L ++  +++      L +++  +
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274

Query: 241 PSLASTI---ADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRL-ANLVVLAGGLDG 296
              +            L    L        K+  + L ++  H     A++  + G L  
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 297 LLRLIDCNGGYNSLP-------AIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE 349
           L+  +      N+L         +  +  + A +E   + + E   + +L   L+     
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-L 393

Query: 350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
            +   A  TL  +   +  +  AL +   +S L +
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 41/308 (13%), Positives = 95/308 (30%), Gaps = 26/308 (8%)

Query: 43  VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLE----RNLVALVLKDLTKQNK 98
           +D     +   V      A+  L KL  +   + R  + E    + +  L+  D      
Sbjct: 150 MDQDKNPMPAPVEHQICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGL 207

Query: 99  HYKKTALHMLTCVA--------QQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALAL 149
                ++ +                   A L   K  + ++++ L     D +   A  L
Sbjct: 208 TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267

Query: 150 GGLA-KDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPEL-AESAS 206
             L+ + + +  + + + G++  L++     +  S   +   AL  +  H  E  A+  +
Sbjct: 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 327

Query: 207 DCDVIPLLIKALNNDEVNVKADAFL-------CLADIAKDSPSLASTIAD-GATTLAVEH 258
               +  L+  L                     ++ +   +      + +       ++H
Sbjct: 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387

Query: 259 LTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318
           L      +  NA   L ++   N +    +   G +  L  LI       ++ +  AL  
Sbjct: 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447

Query: 319 MSAQSEQI 326
           + A     
Sbjct: 448 LMANRPAK 455

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 10/227 (4%)

Query: 26  AFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNL 85
            F D  +          +  +V  L  +   +Q    + L  L     V+ ++ + E   
Sbjct: 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287

Query: 86  VALVLKDLTKQNKHY-KKTALHML-TCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTR 142
           V  +++   +  K    K+ L  L    A   E  A +      L  ++ +L        
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347

Query: 143 ANAALALGG-------LAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV 195
                + GG       L   N+   + + +   L  L+Q L S  L++   A   L  + 
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407

Query: 196 KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242
             +P+  E+  D   + +L   +++    +   +   L ++  + P+
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 66.9 bits (163), Expect = 6e-12
 Identities = 44/309 (14%), Positives = 93/309 (30%), Gaps = 27/309 (8%)

Query: 124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSL 183
              ++ + S L       + + +  L  ++         + Q G LP L+Q+L       
Sbjct: 28  GTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDS-CISMRQSGCLPLLIQLLHGNDKDS 86

Query: 184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK---DS 240
                       +              +  +I +  +D+   +    L L +  +   ++
Sbjct: 87  VLLGNSRGSKEARA--------RASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCET 138

Query: 241 PSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL 300
                   +         +  P       A  +L  +        + +   GGL  +  L
Sbjct: 139 CWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAEL 197

Query: 301 IDCNGGYNSLP-----------AIMALGYMSAQSEQIAEQIIELQG-VGSLQTILQCPHK 348
           +  +     L            A MAL  ++         +  ++G + +L   L+    
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES- 256

Query: 349 EQLQVAAAWTLGQI-GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407
           E LQ   A  L  +  +  V++   L E   +  L+    +      LKS      N+  
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316

Query: 408 PKCENPKEL 416
              EN  ++
Sbjct: 317 HCTENKADI 325

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 40/287 (13%), Positives = 80/287 (27%), Gaps = 35/287 (12%)

Query: 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ 180
           L+   D DS++        + RA A+ AL  +            +   L  L QI A  +
Sbjct: 78  LLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCE 137

Query: 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240
              +   A                      +      +     +    A   L  ++ D 
Sbjct: 138 TCWEWQEA------------------HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE 179

Query: 241 PSLASTIADGATTLAVEHLTYPHGL-----------VQKNAATLLRDMCKHNLRLANLVV 289
               +    G      E L     +           +++ A   L ++   ++     + 
Sbjct: 180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 239

Query: 290 -LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA-QSEQIAEQIIELQGVGSLQTILQCPH 347
            + G +  L+  +              L  +S        + + E+  V +L        
Sbjct: 240 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299

Query: 348 KEQLQVAAAWTLGQIGKHSVDNVTALCEEN----VLSTLLSKITQTC 390
           KE    +    L  +  H  +N   +C  +     L   L+  +QT 
Sbjct: 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 49/328 (14%), Positives = 108/328 (32%), Gaps = 24/328 (7%)

Query: 58  QHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE- 116
            H  L  L ++          +      +      +    +H    A+ +L  ++  +E 
Sbjct: 6   HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 65

Query: 117 ----RCAGLIE------DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC 166
                  G ++        D +    +   +    R  A +AL  L   +      +   
Sbjct: 66  RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125

Query: 167 -GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA-SDCDVIPLLIKAL-NNDEV 223
            G +  LV  L S    L+   A  L  +   +   ++    +   +  L++      + 
Sbjct: 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 185

Query: 224 NVKADAFLCLADIAKDSPSLASTI--ADGATTLAVEHLTYPHG----LVQKNAATLLR-- 275
           +        L +++       + I   DGA    V  LTY        + ++   +LR  
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245

Query: 276 -DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ 334
             +   N     ++     L  LL+ +  +       A   L  +SA++ +  E + ++ 
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305

Query: 335 GVGSLQTILQCPHKEQLQVAAAWTLGQI 362
            V  L+ ++   HK  + + +A  L  +
Sbjct: 306 AVSMLKNLIHSKHKM-IAMGSAAALRNL 332

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 83.4 bits (206), Expect = 1e-17
 Identities = 49/312 (15%), Positives = 105/312 (33%), Gaps = 27/312 (8%)

Query: 98  KHYKKTALHMLTCVAQQDERCAGLIEDKD--LDSIISSLHDFDPDTRANAALALGGLAKD 155
            H+    LH+L  +    E C    E  +  +D   + +          A   L  L+ D
Sbjct: 3   HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 62

Query: 156 NKHFAERIVQCGALPPLVQILASPQ-----------LSLKHAAAFALDGIVKHSPEL-AE 203
            +H    + + G L  + ++L               ++L+  A  AL  +        A 
Sbjct: 63  EEH-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121

Query: 204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI---ADGATTLAVEHLT 260
             S    +  L+  L ++  +++      L +++  +   +            L    L 
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 181

Query: 261 YPHGLVQKNAATLLRDMCKHNLRL-ANLVVLAGGLDGLLRLIDCNGGYNSLP-------A 312
                  K+  + L ++  H     A++  + G L  L+  +      N+L         
Sbjct: 182 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 241

Query: 313 IMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA 372
           +  +  + A +E   + + E   + +L   L+  H   +   A  TL  +   +  +  A
Sbjct: 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEA 300

Query: 373 LCEENVLSTLLS 384
           L +   +S L +
Sbjct: 301 LWDMGAVSMLKN 312

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 75.3 bits (185), Expect = 6e-15
 Identities = 41/321 (12%), Positives = 98/321 (30%), Gaps = 26/321 (8%)

Query: 43  VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLE----RNLVALVLKDLTKQNK 98
           +D     +   V      A+  L KL  +   + R  + E    + +  L+  D      
Sbjct: 34  MDQDKNPMPAPVEHQICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGL 91

Query: 99  HYKKTALHMLTCVA-------QQDERCAGLIEDKD--LDSIISSLHDFDPDTRANAALAL 149
                ++ +              D      +      + ++++ L     D +   A  L
Sbjct: 92  TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151

Query: 150 GGLA-KDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPEL-AESAS 206
             L+ + + +  + + + G++  L++     +  S   +   AL  +  H  E  A+  +
Sbjct: 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 211

Query: 207 DCDVIPLLIKALNNDEVNVKADAFL-------CLADIAKDSPSLASTIAD-GATTLAVEH 258
               +  L+  L                     ++ +   +      + +       ++H
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271

Query: 259 LTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318
           L      +  NA   L ++   N +    +   G +  L  LI       ++ +  AL  
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331

Query: 319 MSAQSEQIAEQIIELQGVGSL 339
           + A      +    +    SL
Sbjct: 332 LMANRPAKYKDANIMSPGSSL 352

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 72.2 bits (177), Expect = 6e-14
 Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 14/229 (6%)

Query: 26  AFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERN- 84
            F D  +          +  +V  L  +   +Q    + L  L     V+ ++ + E   
Sbjct: 112 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 171

Query: 85  ---LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-----LDSIISSLHD 136
              L+   L+   +       +AL  L+  A   E  A +          + ++      
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGALAFLVGTLTYRSQT 229

Query: 137 FDPDTRANAALAL---GGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG 193
                  +    L     L   N+   + + +   L  L+Q L S  L++   A   L  
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289

Query: 194 IVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242
           +   +P+  E+  D   + +L   +++    +   +   L ++  + P+
Sbjct: 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 76.4 bits (187), Expect = 5e-15
 Identities = 40/268 (14%), Positives = 78/268 (29%), Gaps = 16/268 (5%)

Query: 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKH 185
            +   +  L   D   +A  A  +      ++   +++ Q G +  LV +L SP  +++ 
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKAL-NNDEVNVKADAFLCLADIAKDSPSLA 244
           AAA AL  +V  S          + I   +  L       ++      L +++       
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 245 STIADGATTLAVEHLTYPHGL---------------VQKNAATLLRDMCKHNLRLANLVV 289
             IAD    LA   +    G                V  NA   LR++   +     +  
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 290 LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE 349
            +G +D L+  +      +          M            E+                
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 350 QLQVAAAWTLGQIGKHSVDNVTALCEEN 377
           +      ++       + +    L EE 
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEE 270

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 20/183 (10%), Positives = 54/183 (29%), Gaps = 12/183 (6%)

Query: 20  FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-----V 74
           +   +      P    +L   + +   + L+          A A   + + A        
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321

Query: 75  DIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL 134
             +   L+   +  + + L   N    ++   +L+ +++       ++ ++    +   L
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLL 380

Query: 135 HDFDP------DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAA 188
                      D  ++A   +  L       A++      L  ++ +  S        AA
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440

Query: 189 FAL 191
             L
Sbjct: 441 RLL 443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 30/267 (11%), Positives = 75/267 (28%), Gaps = 28/267 (10%)

Query: 42  VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
           ++D ++  + + V + +    +    +    ++  R +         +  +         
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245

Query: 102 KTA--------------LHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD-PDTRANAA 146
            T                  L       +    L     + + ++ +       T    A
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305

Query: 147 LALGGLAKDNKHFAE-----RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201
            AL  L       +        ++   LP + ++L S    +  + A  L  + +H P L
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLL 364

Query: 202 AESASDCDVIPLLIK-----ALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAV 256
                +     +           ++  ++ + A   + ++    P LA      +    +
Sbjct: 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424

Query: 257 EHLTYPHGL--VQKNAATLLRDMCKHN 281
            +L          + A  LL DM    
Sbjct: 425 INLCRSSASPKAAEAARLLLSDMWSSK 451

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 73.2 bits (179), Expect = 1e-14
 Identities = 41/236 (17%), Positives = 90/236 (38%), Gaps = 24/236 (10%)

Query: 42  VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
           V+  ++ LL D + ++   A++ +  +  AK  +   E + + L +L+ K    +     
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVI--AKTREDLYEPMLKKLFSLLKKS---EAIPLT 87

Query: 102 KTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161
           +        +A++            +  + ++    D  T+ N + AL  +AK N     
Sbjct: 88  QEIAKAFGQMAKEKPELV----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
            IV+       + +L+S     K  A   ++ + ++S +          +P +I  L++ 
Sbjct: 144 SIVR-----DFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF-----LPRIINLLHDG 193

Query: 222 EVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDM 277
           +  V+A A   L  +A  +  L   +        +E L     LV K     +  +
Sbjct: 194 DEIVRASAVEALVHLATLNDKLRKVVIK-----RLEELNDTSSLVNKTVKEGISRL 244

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 68.2 bits (166), Expect = 5e-13
 Identities = 41/208 (19%), Positives = 82/208 (39%), Gaps = 20/208 (9%)

Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL-ASPQLSLKH 185
           L  +I  L D       NA   +  +AK  +   E       L  L  +L  S  + L  
Sbjct: 34  LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQ 88

Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245
             A A   + K  PEL +S     +IP+L       +   K +    L +IAK +P L +
Sbjct: 89  EIAKAFGQMAKEKPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 246 TIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305
           +I     ++    L+  +   +  A   +  M +++ +      +   L  ++ L+    
Sbjct: 144 SIVRDFMSM----LSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGD 194

Query: 306 GYNSLPAIMALGYMSAQSEQIAEQIIEL 333
                 A+ AL +++  ++++ + +I+ 
Sbjct: 195 EIVRASAVEALVHLATLNDKLRKVVIKR 222

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 60.5 bits (146), Expect = 2e-10
 Identities = 34/244 (13%), Positives = 77/244 (31%), Gaps = 25/244 (10%)

Query: 133 SLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD 192
           S+ + + D R   A          K           L  L+++L     ++   A   + 
Sbjct: 2   SMEEEEFDIREALANG----EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIM 57

Query: 193 GIVKHSPELAESASDCDVIPLLIKALNNDE-VNVKADAFLCLADIAKDSPSLASTIADGA 251
            I K   +L E      ++  L   L   E + +  +       +AK+ P L  ++    
Sbjct: 58  VIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP-- 110

Query: 252 TTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLP 311
             +   +        + N +  L ++ K N  L   +V        + ++      + L 
Sbjct: 111 --VLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSSKNREDKLT 163

Query: 312 AIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT 371
           A+  +  M   S +     +       +  +L     E ++ +A   L  +   +     
Sbjct: 164 ALNFIEAMGENSFKYVNPFLPR-----IINLLH-DGDEIVRASAVEALVHLATLNDKLRK 217

Query: 372 ALCE 375
            + +
Sbjct: 218 VVIK 221

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 49.3 bits (117), Expect = 9e-07
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 42  VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
           ++ ++           +      L ++  A        +L  ++V   +  L+ +N+  K
Sbjct: 108 MIPVLFANYRIGDEKTKINVSYALEEIAKAN------PMLMASIVRDFMSMLSSKNREDK 161

Query: 102 KTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161
            TAL+ +  + +   +         L  II+ LHD D   RA+A  AL  LA  N    +
Sbjct: 162 LTALNFIEAMGENSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217

Query: 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH 197
                  +   ++ L      +       +  ++  
Sbjct: 218 ------VVIKRLEELNDTSSLVNKTVKEGISRLLLL 247

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 75.4 bits (184), Expect = 2e-14
 Identities = 65/420 (15%), Positives = 130/420 (30%), Gaps = 72/420 (17%)

Query: 113 QQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPL 172
           ++           +L  +I+ L       ++NAA  L  L   N      + +   +P L
Sbjct: 36  RKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVL 95

Query: 173 VQILASPQLSLKHAAAFALDGI-VKHSPELAESASDCDVIPLLIKALNN-DEVNVKADAF 230
           V +L  P+  +   A  AL  I      +   +  +CD +P L++ L    ++++     
Sbjct: 96  VGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVIT 155

Query: 231 LCLADIAKDSPSLASTIADGATTLAVE-----------------HLTYPHGLVQKNAATL 273
             L +++         +      L  E                         V  N A  
Sbjct: 156 GTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC 215

Query: 274 LRDMCKHNLRLANLVVLAGGL-DGLLRLID---------------CNGGYNSLPAIMALG 317
           LR++          +    GL D L+ ++                C     +L   +   
Sbjct: 216 LRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275

Query: 318 YMSAQSEQIA----------------EQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQ 361
              A+  Q A                E + + + V    ++L+      +  A+A  +  
Sbjct: 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQN 335

Query: 362 I----GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELE 417
           +      +     +AL +E  LS +   +T     + +      AL  L     N + + 
Sbjct: 336 LCAGRWTYGRYIRSALRQEKALSAIADLLTNE--HERVVKAASGALRNLAVDARNKELIG 393

Query: 418 ---------------QMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI 462
                          Q    N SE+ + SIL    +++  +  A +    +  + K+  I
Sbjct: 394 KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLI 453

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 53.8 bits (128), Expect = 8e-08
 Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 15/203 (7%)

Query: 11  DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD-KVPSIQHAALATLGKLM 69
              +          +           L    VV + + LL + K P+I  A+   +  L 
Sbjct: 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337

Query: 70  CAKH---VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD 126
             +      IR  + +   ++ +   LT +++   K A   L  +A  D R   LI    
Sbjct: 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV-DARNKELIGKHA 396

Query: 127 LDSIISSLHDFDP--------DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178
           + +++ +L             DT  +    +  +  +N   A+++ +   +  LV I  S
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456

Query: 179 PQLSLK--HAAAFALDGIVKHSP 199
              S K   AAA  L  I  +  
Sbjct: 457 GNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 52.3 bits (124), Expect = 2e-07
 Identities = 49/367 (13%), Positives = 116/367 (31%), Gaps = 24/367 (6%)

Query: 14  QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLM--CA 71
                  ++ +S   D+ + I       V  L+  L   +   +      TL  L    +
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166

Query: 72  KHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSII 131
             ++I    L   L   V+   +   +   +                AG + +   +   
Sbjct: 167 IKMEIVDHALH-ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSE 225

Query: 132 SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC-----GALPPLVQILASPQLSLKHA 186
           +     + D   +A + +       K    ++V+        L   V          + A
Sbjct: 226 ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285

Query: 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVN-VKADAFLCLADIAKDSPSLAS 245
           A    +          E     +V+ + I  L   +   +   +   + ++     +   
Sbjct: 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGR 345

Query: 246 TI-----ADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL 300
            I      + A +   + LT  H  V K A+  LR++          ++    +  L++ 
Sbjct: 346 YIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE--LIGKHAIPNLVKN 403

Query: 301 IDCNGGYNSLP--------AIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352
           +      +S           +  +  + A++ + A+++ E QG+  L  I +  ++ + +
Sbjct: 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKE 463

Query: 353 VAAAWTL 359
           V AA  +
Sbjct: 464 VRAAALV 470

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 49.2 bits (116), Expect = 2e-06
 Identities = 38/228 (16%), Positives = 65/228 (28%), Gaps = 2/228 (0%)

Query: 235 DIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGL 294
           D  +                 +  L +    V+ NAA  L+ +C  N ++   V    G+
Sbjct: 33  DSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGI 92

Query: 295 DGLLRLIDCNGGYNSLPAIMALGYMS-AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV 353
             L+ L+D       L A  AL  +S  + +     I    GV +L  +L+      L  
Sbjct: 93  PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTE 152

Query: 354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENP 413
               TL  +  H    +  +       T    I  +         CK           N 
Sbjct: 153 VITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNT 212

Query: 414 KELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQE 461
               + +    SE       C    +     + +          K+ E
Sbjct: 213 AGCLRNVSSERSEARRKLRECDGL-VDALIFIVQAEIGQKDSDSKLVE 259

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 19/198 (9%)

Query: 123 EDKDLDSIISSLH--DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ 180
            +  L+  +S L      P   + AA  +           +R+ Q   +  L+Q+L    
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKD 239
             ++ A   AL  +V    +     ++ + +P L++ L    ++  K      L +++ +
Sbjct: 66  EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 240 SPSLASTIADGATTLAVEHLTYPHGL---------------VQKNAATLLRDMCKHNLRL 284
                  I +   TL    +    G                +  N    LR+M       
Sbjct: 126 DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 285 ANLVVLAGGL-DGLLRLI 301
              +    GL D L+  +
Sbjct: 186 RKAMRRCDGLIDSLVHYV 203

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 41/249 (16%)

Query: 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178
               +  + D +   L D +   R ++A  L                  A+   ++  + 
Sbjct: 17  YNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSD 65

Query: 179 PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238
                +   AF L  I     ++ +   D     L   ALN+    V+A A    A   K
Sbjct: 66  KNYIRRDIGAFILGQI-----KICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK 120

Query: 239 DSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
            +P  +  I +     +          V++  A  +  +      +  L+ L    +G +
Sbjct: 121 KNPIYSPKIVE----QSQITAFDKSTNVRRATAFAISVI-NDKATIPLLINLLKDPNGDV 175

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
           R            A  A+      +  I +  +E+         LQ  + E++++ A   
Sbjct: 176 RNW----------AAFAININKYDNSDIRDCFVEM---------LQDKN-EEVRIEAIIG 215

Query: 359 LGQIGKHSV 367
           L       V
Sbjct: 216 LSYRKDKRV 224

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 32/216 (14%)

Query: 37  LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
               + V L +   +DK    +      LG++   K  +   + +   L  + L D   +
Sbjct: 50  RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNVFNILNNMALND---K 103

Query: 97  NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN 156
           +   + TA+       +++     +   K ++    +  D   + R   A A+  +    
Sbjct: 104 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK- 158

Query: 157 KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIK 216
                       +P L+ +L  P   +++ AAFA++     + +         +    ++
Sbjct: 159 ----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVE 199

Query: 217 ALNNDEVNVKADAFLCLADIAKDS--PSLASTIADG 250
            L +    V+ +A + L+          L   +   
Sbjct: 200 MLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN 235

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 56/233 (24%)

Query: 43  VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKK 102
           V++ +  L D    ++ AA   LGK+   + V+         L+   LKD   ++   ++
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP--------LIKA-LKD---EDAWVRR 68

Query: 103 TALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161
            A   L           G I D+  ++ +I +L D D   R +AA+ALG +  +      
Sbjct: 69  AAADAL-----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER----- 112

Query: 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
                 A+ PL++ L      ++ AAAFAL  I            D   +  LIKAL ++
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEI-----------GDERAVEPLIKALKDE 155

Query: 222 EVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
           +  V+  A   L +I            +       +      G  +K A   L
Sbjct: 156 DGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 48/246 (19%), Positives = 83/246 (33%), Gaps = 56/246 (22%)

Query: 119 AGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA 177
           A L  D + ++  I +L D     R  AA ALG +  +            A+ PL++ L 
Sbjct: 12  APLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALK 60

Query: 178 SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237
                ++ AAA AL  I            D   +  LIKAL +++  V+  A + L  I 
Sbjct: 61  DEDAWVRRAAADALGQI-----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109

Query: 238 KDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGL 297
                      + A    ++ L      V+  AA  L ++      +  L+      DG 
Sbjct: 110 ----------DERAVEPLIKALKDEDWFVRIAAAFALGEI-GDERAVEPLIKALKDEDGW 158

Query: 298 LRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357
           +R            A  ALG +  +           +   +++ + +       +  A  
Sbjct: 159 VRQS----------AADALGEIGGE-----------RVRAAMEKLAETGT-GFARKVAVN 196

Query: 358 TLGQIG 363
            L    
Sbjct: 197 YLETHK 202

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 35/159 (22%)

Query: 37  LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
           + D   V+ ++  L D+   ++ +A   LG++   + V+         L+   LKD   +
Sbjct: 77  IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEP--------LIKA-LKD---E 124

Query: 97  NKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKD 155
           +   +  A   L           G I D+  ++ +I +L D D   R +AA ALG +  +
Sbjct: 125 DWFVRIAAAFAL-----------GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE 173

Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194
                           + ++  +     +  A   L+  
Sbjct: 174 -----------RVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 56/239 (23%)

Query: 37  LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
             D   V++ +  L D    ++ AA   LGK+   + V+         L+   LKD   +
Sbjct: 10  HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP--------LIKA-LKD---E 57

Query: 97  NKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKD 155
           +   ++ A   L           G I D+  ++ +I +L D D   R +AA+ALG +  +
Sbjct: 58  DAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 106

Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLI 215
                       A+ PL++ L      ++ AAAFAL  I            D   +  LI
Sbjct: 107 R-----------AVEPLIKALKDEDWFVRIAAAFALGEI-----------GDERAVEPLI 144

Query: 216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
           KAL +++  V+  A   L +I            +       +      G  +K A   L
Sbjct: 145 KALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 55/241 (22%)

Query: 123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLS 182
           + + ++  I +L D     R  AA ALG +  +            A+ PL++ L      
Sbjct: 12  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAW 60

Query: 183 LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242
           ++ AAA AL  I            D   +  LIKAL +++  V+  A + L  I      
Sbjct: 61  VRRAAADALGQI-----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG----- 104

Query: 243 LASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID 302
                 + A    ++ L      V+  AA  L ++         L+      DG +R   
Sbjct: 105 -----DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEP-LIKALKDEDGWVRQS- 157

Query: 303 CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI 362
                    A  ALG +  +           +   +++ + +       +  A   L   
Sbjct: 158 ---------AADALGEIGGE-----------RVRAAMEKLAETGT-GFARKVAVNYLETH 196

Query: 363 G 363
            
Sbjct: 197 K 197

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 35/159 (22%)

Query: 37  LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
           + D   V+ ++  L D+   ++ +A   LG++   + V+         L+   LKD   +
Sbjct: 72  IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEP--------LIKA-LKD---E 119

Query: 97  NKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKD 155
           +   +  A   L           G I D+  ++ +I +L D D   R +AA ALG +  +
Sbjct: 120 DWFVRIAAAFAL-----------GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE 168

Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194
                           + ++  +     +  A   L+  
Sbjct: 169 -----------RVRAAMEKLAETGTGFARKVAVNYLETH 196

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 38/332 (11%), Positives = 108/332 (32%), Gaps = 36/332 (10%)

Query: 115 DERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ 174
                 ++  + +  +   +H+  P+ +      +  + +      + + Q GA+  +++
Sbjct: 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILE 505

Query: 175 ILASPQ---LSLKHAAAFALDGI-VKHSPELAESASDC-DVIPLLIKALNNDEVNVKA-- 227
            LA+ Q     ++     AL  + +  +P L        + IP L + L           
Sbjct: 506 YLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565

Query: 228 ------------DAFLCLADIAKDSPSLASTIA------DGATTLAVEHLTYPHGLVQKN 269
                       +A L L ++A    S    +           +     +   +  +Q++
Sbjct: 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625

Query: 270 AATLLRDMCKHNLRLANLVVLAGG------LDGLLRLIDCNGGYNSLPAIMALGYMSAQS 323
              L+ +M  H L +A               + L++L+  +   +          ++   
Sbjct: 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685

Query: 324 EQIAEQIIEL-QGVGSLQTILQCPHKE-QLQVAAAWTLGQIGKHSVDNVTALCEENVLST 381
             IA++++   + + +   +      + +L+         + +   DN T      +   
Sbjct: 686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQEN 745

Query: 382 --LLSKITQTCVSDNLKSKCKNALNILIPKCE 411
             L   +  +    +   +   A+ +++ K +
Sbjct: 746 QKLKDALNMSLKRGDSGPEFSAAIPVILAKIK 777

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 33/151 (21%)

Query: 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLK 184
             L    S + D +   R + + AL  +  +            A  PL++ L++    ++
Sbjct: 12  SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIR 59

Query: 185 HAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA 244
            AAA+ +               D   +  LIK L +D   V++ A   L  I        
Sbjct: 60  GAAAWIIGNF-----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIG------- 101

Query: 245 STIADGATTLAVEHLTYPHGLVQKNAATLLR 275
               +       +      G  +K A   L 
Sbjct: 102 ---GERVRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 22/110 (20%)

Query: 120 GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
             + D+  + ++ SL + D   R  AA  +G          ER     A+ PL+++L   
Sbjct: 37  SRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQ------DER-----AVEPLIKLLEDD 85

Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADA 229
              ++  AA +L+ I               V   + K         +  A
Sbjct: 86  SGFVRSGAARSLEQI-----------GGERVRAAMEKLAETGTGFARKVA 124

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 36/162 (22%)

Query: 32  STIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK 91
           S+ H     + +      +AD+   ++      L +        +  E  E  L+   L 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSR--------MGDEAFEP-LLES-LS 52

Query: 92  DLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALG 150
           +   ++   +  A  ++           G  +D+  ++ +I  L D     R+ AA +L 
Sbjct: 53  N---EDWRIRGAAAWII-----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSLE 98

Query: 151 GLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD 192
            +  +                + ++  +     +  A   L+
Sbjct: 99  QIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLE 129

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 48/353 (13%), Positives = 116/353 (32%), Gaps = 47/353 (13%)

Query: 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ---------------LSL 183
            D R NA  AL  L+K  +      V   A+  L+ +L + +               +  
Sbjct: 36  LDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIIS 91

Query: 184 KHAAAFALDGIVKHSPELAESASDC-----DVIPLLIKALNNDEVNVKADAFLCLADIAK 238
                   +   + S +L    ++      + + LL+  L   + +V+      L  + K
Sbjct: 92  NDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLK 151

Query: 239 DSPSLAS----TIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGL 294
                          G + L ++ L     +++ +   LL+ + + N  +  +V      
Sbjct: 152 QLGPQVQQIILVSPMGVSRL-MDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAF 210

Query: 295 DGLLRLID----CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQ 350
           + LL +I      +GG      ++ L  +   +        E   +  ++   +   +  
Sbjct: 211 ERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENS 270

Query: 351 LQ----VAAAWTLGQIGKHSVD----------NVTALCEENVLSTLLSKITQTCVSDNLK 396
                 V     + Q+ +  V              A+ +  +L  L + +  T V  ++ 
Sbjct: 271 GWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330

Query: 397 SKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRS 449
           ++  N ++ +I  C+  ++    +    +    A ++   + +    P   R 
Sbjct: 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRC 383

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 58/456 (12%), Positives = 136/456 (29%), Gaps = 59/456 (12%)

Query: 36  FLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNL-VALVLKDLT 94
           F+K    V L++ LL +    ++   +  L  L+      ++Q +L   + V+ ++  L 
Sbjct: 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176

Query: 95  KQNKHYKKTALHMLTCVAQQDERCAGLIE-----DKDLDSIISSLHDFDPDTRANAALAL 149
              +  +   + +L  + + +     ++      ++ LD I    +        +  + L
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236

Query: 150 GGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAA---------------FALDGI 194
             L K+N        +   +  +         +   +A                 + +  
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296

Query: 195 VKHSPELAESASDCDVIPLLIKAL--NNDEVNVKADAFLCLADIAKDSPSLASTIAD--- 249
              +    ++   C ++  L   L       ++  +    ++++ +         A    
Sbjct: 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356

Query: 250 -------GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDG------ 296
                      L +  +      V + A         +  +     +++  L        
Sbjct: 357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG 416

Query: 297 -----LLRLIDCNGGYNSLP---AIMALGYMSAQSEQIAEQIIELQ--------GVGSLQ 340
                   L       +SL    A +AL +   ++    EQ++ +Q         V  LQ
Sbjct: 417 NTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ 476

Query: 341 TI---LQCPHKEQLQVAAAWTLGQIGKHSVDNVTA-LCEENVLSTLLSKITQTCVSDNLK 396
                L    K Q +V     L     +    VT  L     +  L  +I +    +   
Sbjct: 477 QCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQL 536

Query: 397 SKCKNALNILIPKCENPKELEQMLLGNVSEELLASI 432
            +   AL + I    N   LE  +   + + +   I
Sbjct: 537 VQGLCALLLGISIYFNDNSLETYMKEKLKQLIEKRI 572

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 57/389 (14%), Positives = 133/389 (34%), Gaps = 42/389 (10%)

Query: 42  VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
           +      L +D  P ++ AA + LG+        +  + ++  ++ +     + +    +
Sbjct: 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKV----LELDNVKSEIIPMFSNLASDEQDSVR 220

Query: 102 KTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF 159
             A+     +AQ    E    L+    + ++  +  D     R   A     L K     
Sbjct: 221 LLAVEACVNIAQLLPQEDLEALV----MPTLRQAAEDKSWRVRYMVADKFTELQK---AV 273

Query: 160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH-SPELAESASDCDVIPLLIKAL 218
              I +   +P    ++   +  ++ AA+  +    ++ S +  E+     ++P + + +
Sbjct: 274 GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333

Query: 219 NNDEVNVK---ADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLR 275
           ++   +VK   A   + L+ I     ++   +      L +  L      V+ N  + L 
Sbjct: 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLP-----LFLAQLKDECPEVRLNIISNLD 388

Query: 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ--SEQIAEQIIEL 333
            + +          L   L  ++ L +       L  I  +  ++ Q   E   E++  L
Sbjct: 389 CVNEVIGIRQLSQSL---LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445

Query: 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSD 393
                    L   H   ++ AA   L ++ +          +E   +T++ K+       
Sbjct: 446 -----CMAWL-VDHVYAIREAATSNLKKLVEK-------FGKEWAHATIIPKVLAMSGDP 492

Query: 394 NLKSK--CKNALNILIPKCENPKELEQML 420
           N   +      +N+L   C      + ML
Sbjct: 493 NYLHRMTTLFCINVLSEVCGQDITTKHML 521

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 11/184 (5%)

Query: 11  DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMC 70
           D   R RL  ++ M   A +     F + L    L +  L D V +I+ AA + L KL+ 
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKL--NSLCMAWLVDHVYAIREAATSNLKKLVE 470

Query: 71  AKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI 130
                  +E     ++  VL      N  ++ T L  +  +++   +   +     L ++
Sbjct: 471 K----FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTV 524

Query: 131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFA 190
           +    D   + R N A +L  +           +Q    P L ++     + +K+ A  A
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEA 581

Query: 191 LDGI 194
           L  +
Sbjct: 582 LTVL 585

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 14/228 (6%)

Query: 11  DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMC 70
           D  Q  +      +   +      + ++ L  + L +  L D+ P ++   ++ L  +  
Sbjct: 335 DANQHVKSALASVIMGLSPILGKDNTIEHL--LPLFLAQLKDECPEVRLNIISNLDCVNE 392

Query: 71  AKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI 130
              +    +    +L+  +++         +   +  +  +A Q        ++K     
Sbjct: 393 VIGIRQLSQ----SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ--LGVEFFDEKLNSLC 446

Query: 131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFA 190
           ++ L D     R  A   L  L +    F +       +P ++ +   P    +    F 
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVE---KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 191 LDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238
           ++ +        +  +   ++P +++   +   NV+ +    L  I  
Sbjct: 504 INVLS---EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 61/398 (15%), Positives = 129/398 (32%), Gaps = 108/398 (27%)

Query: 1   MSRKSVKNS---IDHYQRARLCFVQTMSAFADKPSTIHFL---KDLNVVDLIVPLLADKV 54
           +  K  +N    + + Q A+       +AF +    I  L   +   V D +       +
Sbjct: 238 LKSKPYENCLLVLLNVQNAK-----AWNAF-NLSCKI--LLTTRFKQVTDFLSAATTTHI 289

Query: 55  PSIQHAALATLGKL--MCAKHVDIRQEVLER----------NLVALVLKDLTKQNKHYKK 102
               H+   T  ++  +  K++D R + L R          +++A  ++D      ++K 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 103 TALHMLTCVAQQDERCAGLIEDKDLDSII-SSLHDFDP-DTRAN-AALALGGLAKDNKHF 159
                              +    L +II SSL+  +P + R     L++          
Sbjct: 350 -------------------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAH-- 386

Query: 160 AERIVQCGALPPLV-QIL------ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212
                    +P ++  ++      +   + +     ++L  + K   E   S      + 
Sbjct: 387 ---------IPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIY-LE 434

Query: 213 LLIKALNNDEVNVKA-DAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAA 271
           L +K  N   ++    D +        DS  L     D        H+ + H L      
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPK--TFDSDDLIPPYLDQ---YFYSHIGH-H-LKNIEHP 487

Query: 272 ---TLLRDM------CKHNLRLANLVVLAGG--LDGLLRLIDCNGGYNSLPAIMALGYMS 320
              TL R +       +  +R  +    A G  L+ L +L      Y          Y+ 
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----YKP--------YIC 535

Query: 321 AQS---EQIAEQIIE-LQGVGSLQTILQCPHKEQLQVA 354
                 E++   I++ L  +   + ++   + + L++A
Sbjct: 536 DNDPKYERLVNAILDFLPKIE--ENLICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 63/480 (13%), Positives = 126/480 (26%), Gaps = 171/480 (35%)

Query: 106 HMLTCVAQQDERCAGLIED------KDLD---------SIISSLHDFD-----PDTRANA 145
           HM     +   +   ++         + D         SI+S   + D      D   + 
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKD-AVSG 63

Query: 146 ALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA 205
            L L       +   E +VQ                       F  + +  +   L    
Sbjct: 64  TLRLFWTLLSKQ---EEMVQ----------------------KFVEEVLRINYKFLMSPI 98

Query: 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGL 265
                 P ++  +  ++ +           +  D+   A                  + +
Sbjct: 99  KTEQRQPSMMTRMYIEQRDR----------LYNDNQVFA-----------------KYNV 131

Query: 266 VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG-------- 317
            +      LR      LR A  V++ G L G         G   + A+            
Sbjct: 132 SRLQPYLKLRQALL-ELRPAKNVLIDGVL-G------S--GKTWV-ALDVCLSYKVQCKM 180

Query: 318 -----YMSAQSEQIAEQIIE-LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT 371
                +++ ++    E ++E LQ    L   +      +   ++        K  + ++ 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTSRSDHSSN------IKLRIHSI- 230

Query: 372 ALCEENVLSTLL-SKITQTC--VSDNLKSK---------CK--------NALNILIPKCE 411
               +  L  LL SK  + C  V  N+++          CK           + L     
Sbjct: 231 ----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 412 NPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAP- 470
               L+   +    +E+ +       K L C P           L +  E+       P 
Sbjct: 287 THISLDHHSMTLTPDEVKS----LLLKYLDCRP---------QDLPR--EVL---TTNPR 328

Query: 471 HLKTINACFPNEVIHF-VSPHYLEDLINR-----LDQFNP-------------QKSSNLP 511
            L  I     + +  +    H   D +       L+   P               S+++P
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 9/195 (4%)

Query: 56  SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD 115
           +++  + A L  L      ++   +L      L+ + L       K++ + +L  +A+  
Sbjct: 336 NLRKCSAAALDVLANVYRDELLPHILP-----LLKELLFHHEWVVKESGILVLGAIAEGC 390

Query: 116 ERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI 175
            +       + +  +I  L D     R+     L   A               +  L++ 
Sbjct: 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450

Query: 176 LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKA---DAFLC 232
           +      ++ AA  A   + + +           ++  L+ A +  +        DA   
Sbjct: 451 ILDSNKRVQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGT 509

Query: 233 LADIAKDSPSLASTI 247
           LAD      +    I
Sbjct: 510 LADSVGHHLNKPEYI 524

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 44/381 (11%), Positives = 117/381 (30%), Gaps = 40/381 (10%)

Query: 41  NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALV---LKDLTKQN 97
           +++  +  LL  +  +    A   L K+       +  +VL+R L  ++   L+     +
Sbjct: 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS 187

Query: 98  KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN- 156
              +  A+  +        +   L  D  ++++ +   D +P+ R N   AL  L +   
Sbjct: 188 PKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM 247

Query: 157 KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS-DCDVIPLLI 215
                 +     +  ++Q       ++   A      + +              +IP+L+
Sbjct: 248 DRLLPHMHNI--VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 305

Query: 216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLR 275
             +   ++++             D       +   +              +  +   LL+
Sbjct: 306 NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLK 365

Query: 276 DMCKHN---LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
           ++  H+   ++ +                           I+ LG ++    Q     + 
Sbjct: 366 ELLFHHEWVVKES--------------------------GILVLGAIAEGCMQGMIPYLP 399

Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVS 392
            + +  L   L       ++    WTL +     V        + +++ LL +I  +  +
Sbjct: 400 -ELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--N 455

Query: 393 DNLKSKCKNALNILIPKCENP 413
             ++    +A   L  +    
Sbjct: 456 KRVQEAACSAFATLEEEACTE 476

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 25/352 (7%)

Query: 41  NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHY 100
            ++  ++  L+DK   ++     TL +      V    +   + L+  +LK +   NK  
Sbjct: 400 ELIPHLIQCLSDKKALVRSITCWTLSR-YAHWVVSQPPDTYLKPLMTELLKRILDSNKRV 458

Query: 101 KKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA 160
           ++ A      + ++            LD+++ +   +          A+G LA    H  
Sbjct: 459 QEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518

Query: 161 ERIVQCGAL-PPLVQILASPQLSLKH-AAAFALDGIVKHSPELAESASDCDVIPLLIKAL 218
            +      L PPL+Q     +   K           V  + +         V    +  +
Sbjct: 519 NKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV 578

Query: 219 NN-----------------DEVNVKADAFLCLADIAKDSPSLASTIADGAT--TLAVEHL 259
                               + +    A   L+ +A+        +   +   TL  + +
Sbjct: 579 QKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM 638

Query: 260 TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM 319
                 V++++  LL D+ K          +A  +  L   ++         A  A+G +
Sbjct: 639 QDKMPEVRQSSFALLGDLTKA-CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEI 697

Query: 320 SAQSEQIAEQIIELQGVGSLQTILQCPH-KEQLQVAAAWTLGQIGKHSVDNV 370
           S Q     +  I    +  L  I+  P+  + L    A T+G++G      V
Sbjct: 698 SIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 38/288 (13%), Positives = 87/288 (30%), Gaps = 26/288 (9%)

Query: 15  RARLCFVQTMSAFADKPSTIHFLKDLN-VVDLIVPLLADKVPSIQHAALATLGKLMCAKH 73
           R R   V    +  D P  +     ++  +  I+ L+ D+   ++      +G++  +  
Sbjct: 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443

Query: 74  VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISS 133
             I  +     +V   L  L + +          +  + +Q              +++  
Sbjct: 444 ESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDG 502

Query: 134 L------HDFDPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASPQ------ 180
           L       D + + RA+A  AL  + +      AE          ++  L          
Sbjct: 503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI--STFVMDKLGQTMSVDENQ 560

Query: 181 ------LSLKHAAAFALDGIVKHSPELAESASDC--DVIPLLIKALNN-DEVNVKADAFL 231
                  SL+   +  L  +     +   S       ++ L  + L   D   ++ D F 
Sbjct: 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620

Query: 232 CLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCK 279
            ++ +A           +  +   ++ L      V   A   + D+  
Sbjct: 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN 668

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 35/282 (12%), Positives = 79/282 (28%), Gaps = 23/282 (8%)

Query: 19  CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA--ALATLGKLMCAKHVDI 76
           C  +   + A+       L    VV   +  L D      +    +  L + +       
Sbjct: 434 CIGRIADSVAESIDPQQHLP--GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSP 491

Query: 77  RQEVLERNLVALVLKDLTKQNKHY-KKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH 135
                   +  L+       N+   + +A   LT + +                ++  L 
Sbjct: 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLG 551

Query: 136 DF------------DPDTRANAALALGGLAKDNKHFAERIVQCGA--LPPLVQILASPQL 181
                             +   +  L  LA   +     +       +    ++L     
Sbjct: 552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDS 611

Query: 182 SLKHAAAF-ALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240
           +      F A+  +     +  E   +    P L+KALN  +  V   A   +ADI+   
Sbjct: 612 AFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSL 670

Query: 241 PSLASTIADGATTLAVEHLTYP--HGLVQKNAATLLRDMCKH 280
                  +D    +  + ++ P     ++    ++  D+  +
Sbjct: 671 EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 41.7 bits (97), Expect = 7e-04
 Identities = 44/384 (11%), Positives = 117/384 (30%), Gaps = 34/384 (8%)

Query: 44  DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTKQNKHYKK 102
             + P +   + ++  A + +        +  +    +E  + +     D+  +   + +
Sbjct: 257 TFMKPYMEQALYALTIATMKSP-------NDKVASMTVEFWSTICEEEIDIAYELAQFPQ 309

Query: 103 TALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162
           + L          +         +L ++++  ++   D   N +++ G   +        
Sbjct: 310 SPLQSYNFALSSIKD-----VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN 364

Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
            +    L  + Q + +     + AA  A   I+    ++  +      +P ++  +N+  
Sbjct: 365 HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS 424

Query: 223 VNVKADAFLCLADIAKDSPSLAST--IADGATTLAVEHLTYPHGLVQKNAATL--LRDMC 278
           + VK     C+  IA              G     +  L     +    + T+  L +  
Sbjct: 425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQL 484

Query: 279 KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL--PAIMALGYMSAQSEQIAEQIIE---- 332
                          +DGL+   +      +    A  AL  M   +     +       
Sbjct: 485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544

Query: 333 ---------LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
                    +    +  T+      ++LQ      L  + + S  +V  + +   L  L 
Sbjct: 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM--LMGLF 602

Query: 384 SKITQTCVSDNLKSKCKNALNILI 407
            ++ +   S  ++     A++ L 
Sbjct: 603 FRLLEKKDSAFIEDDVFYAISALA 626

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	542
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.98
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.94
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.83
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.82
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.82
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.82
3grl_A	651	General vesicular transport factor P115; vesicle t	99.81
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.79
3grl_A	651	General vesicular transport factor P115; vesicle t	99.78
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.77
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.74
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.74
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.69
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.67
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.65
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.64
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.62
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.62
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.61
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.59
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.57
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.54
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.52
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.51
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.5
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.5
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.48
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.47
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.2
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.14
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.07
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.05
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.02
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.01
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.75
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.73
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.7
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.7
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.69
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.62
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.6
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.56
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.51
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.46
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.4
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.34
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.31
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.23
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.21
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.09
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.09
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.04
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.03
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.0
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.96
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.86
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.8
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.75
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.59
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.44
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.35
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.33
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.26
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.26
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.21
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.13
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	97.08
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.0
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.94
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.93
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.83
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.79
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.74
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.72
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.6
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.52
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.33
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.64
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.6
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.54
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.25
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.04
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.3
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	94.19
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.9
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.91
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.87
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.15
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	89.36
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	88.07
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	87.88
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	86.16
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	84.97
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	84.57
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	84.26
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	84.19
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	84.18
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	80.76
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	80.5
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	80.46

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4.6e-46  Score=384.74  Aligned_cols=395  Identities=16%  Similarity=0.231  Sum_probs=355.7

Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAE  161 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~  161 (542)
                      .++.+++.+.+++++.+..|+..++++.+.  ++.+..+++.|++|.|+++|++. ++.++..|+|+|+|++.++++.++
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            489999999999999999999999997643  45566699999999999999755 589999999999999999999999


Q ss_pred             HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC-----HHHHHHHHHHHHHH
Q psy12594        162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE-----VNVKADAFLCLADI  236 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l  236 (542)
                      .+++.|++|.|+++|+++++.+++.|+|+|+||+.++++.+..+.+.|+++.|+.++..++     ..+++.++|+++++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988999999999999999999998654     45789999999999


Q ss_pred             hcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHH
Q psy12594        237 AKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA  315 (542)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~  315 (542)
                      +.+...........++++ |+.++.+++++++..++|+|++|+.+..+..+.+.+.|+++.|+.++.+++..++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            987654555555578999 9999999999999999999999999998888888899999999999999999999999999


Q ss_pred             HhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHH
Q psy12594        316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNL  395 (542)
Q Consensus       316 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v  395 (542)
                      |+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++.+.+.+++.|+++.|+.++.++  +.++
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v  374 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKT  374 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHH
Confidence            9999999999999999999999999999985 469999999999999999999999999999999999999987  5799


Q ss_pred             HHHHHHHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCC------hhhhhHHHHhcchHH
Q psy12594        396 KSKCKNALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCD------PVARRSFVTSHCLRK  458 (542)
Q Consensus       396 ~~~a~~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~------~~~~~~~~~~g~~~~  458 (542)
                      |++|+|+|+|++.           +.+.+++|+++|. +.|++++..++++|.|++..+      ++.+..|.++||+++
T Consensus       375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~  453 (510)
T 3ul1_B          375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK  453 (510)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH
Confidence            9999999999963           3588999999999 999999999999999998643      234457889999999


Q ss_pred             hhhcC--CCCcHH-HHHHHHhccCccch
Q psy12594        459 VQEIE--PTPEIA-PHLKTINACFPNEV  483 (542)
Q Consensus       459 l~~l~--~~~~~~-~a~~~l~~~~~~~~  483 (542)
                      |+.++  +|.+++ +|..+|++||+++.
T Consensus       454 ie~Lq~~~n~~i~~~A~~iie~yf~~~~  481 (510)
T 3ul1_B          454 IEALQRHENESVYKASLNLIEKYFSVEE  481 (510)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            99999  788888 59999999998554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=5e-45  Score=379.27  Aligned_cols=396  Identities=16%  Similarity=0.225  Sum_probs=355.2

Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHH
Q psy12594         84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFA  160 (542)
Q Consensus        84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~  160 (542)
                      ..++.+++.+.++++..+..|+..++++.+.  ++....+++.|++|.|+++|... ++.++..|+|+|++++.+++...
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            4688999999999999999999999997543  34455589999999999999755 59999999999999999999999


Q ss_pred             HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC-----HHHHHHHHHHHHH
Q psy12594        161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE-----VNVKADAFLCLAD  235 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~  235 (542)
                      ..+++.|++|.|+.++.++++.+++.|+|+|+||+.++++.+..+.+.|+++.|+.++..++     ..+++.++|++++
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999989999999999999999999998653     4578999999999


Q ss_pred             HhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHH
Q psy12594        236 IAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIM  314 (542)
Q Consensus       236 l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~  314 (542)
                      ++.+...........+++| |+.++.+++++++..++|+|.+++.+.++..+.+.+.|+++.|+.++.++++.++..+++
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            9997654555555578999 999999999999999999999999999888888889999999999999999999999999


Q ss_pred             HHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChH
Q psy12594        315 ALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDN  394 (542)
Q Consensus       315 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~  394 (542)
                      +|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++.+...+++.|+++.|+.++.++  +.+
T Consensus       316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~  392 (529)
T 3tpo_A          316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFK  392 (529)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHH
T ss_pred             HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHH
Confidence            99999999999999999999999999999985 468999999999999999999999999999999999999987  579


Q ss_pred             HHHHHHHHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCC------hhhhhHHHHhcchH
Q psy12594        395 LKSKCKNALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCD------PVARRSFVTSHCLR  457 (542)
Q Consensus       395 v~~~a~~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~------~~~~~~~~~~g~~~  457 (542)
                      +|++|+|+|+|++.           +.|.+++|+.+|. +.|++++..++++|.|++..+      ++....|.++||++
T Consensus       393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~  471 (529)
T 3tpo_A          393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD  471 (529)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHH
Confidence            99999999999963           3578999999999 999999999999999998643      23345788999999


Q ss_pred             HhhhcC--CCCcHH-HHHHHHhccCccch
Q psy12594        458 KVQEIE--PTPEIA-PHLKTINACFPNEV  483 (542)
Q Consensus       458 ~l~~l~--~~~~~~-~a~~~l~~~~~~~~  483 (542)
                      +|+.++  +|.+++ +|..+|++||+++.
T Consensus       472 ~ie~Lq~~~n~~i~~~A~~iie~yf~~~~  500 (529)
T 3tpo_A          472 KIEALQRHENESVYKASLNLIEKYFSVEE  500 (529)
T ss_dssp             HHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            999999  788888 59999999998554

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2e-42  Score=364.29  Aligned_cols=463  Identities=14%  Similarity=0.133  Sum_probs=382.0

Q ss_pred             HHHHHHHHHHH---------HHHHHHHHhcCCCC-chH-HHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHH
Q psy12594          8 NSIDHYQRARL---------CFVQTMSAFADKPS-TIH-FLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDI   76 (542)
Q Consensus         8 ~~~~~~~~~r~---------~~~~~l~~l~~~~~-~~~-~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~   76 (542)
                      +.+++|-+.+.         .+..++.++...+. ... .+...|++|.|+.++.++++.++..|+.++.+++  .++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa--~~~~~  323 (810)
T 3now_A          246 DQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAAS--SKKDK  323 (810)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHT--TSHHH
T ss_pred             HHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCcHH
Confidence            35556655433         56777888877543 333 3448899999999999999999999999999999  88899


Q ss_pred             HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-hhh-hHhhcC----ChHHHHhhhcCC--CHHHHHHHHHH
Q psy12594         77 RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE-RCA-GLIEDK----DLDSIISSLHDF--DPDTRANAALA  148 (542)
Q Consensus        77 ~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~-~~~~~g----~v~~Lv~lL~~~--~~~~~~~a~~~  148 (542)
                      ++.+.+.|+ +.|+.+++++++.++..|+.+|++++.... +.. ..++.|    .++.|+++|.++  +++++..|+|+
T Consensus       324 R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Avea  402 (810)
T 3now_A          324 AKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADG  402 (810)
T ss_dssp             HHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHH
T ss_pred             HHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            999999876 999999999889999999999999975321 222 234444    366788888888  89999999999


Q ss_pred             HHHhhcCChHHHHHHH-HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH----------------------------
Q psy12594        149 LGGLAKDNKHFAERIV-QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP----------------------------  199 (542)
Q Consensus       149 L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~----------------------------  199 (542)
                      |.+++.+ +..+..++ +.|++|.|+++++++++.++..|+++|.||+.+.+                            
T Consensus       403 LayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~  481 (810)
T 3now_A          403 LAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDV  481 (810)
T ss_dssp             HHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHH
T ss_pred             HHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccH
Confidence            9999984 45566666 56999999999999999999999999999998541                            


Q ss_pred             -HH---HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHH
Q psy12594        200 -EL---AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLL  274 (542)
Q Consensus       200 -~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L  274 (542)
                       ..   .+.+++.|++|.|+.+++++++.+++.|+|+|+||+.+ ++++..+.+.|+++ |+.+|.++++..++.|+|+|
T Consensus       482 ~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL  560 (810)
T 3now_A          482 DFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL  560 (810)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHH
Confidence             11   26788999999999999999999999999999999976 46999999999999 99999999999999999999


Q ss_pred             HHHhcCC-hHHHHH-HHhcCCHHHHHHhhhcCCcc-chHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhH
Q psy12594        275 RDMCKHN-LRLANL-VVLAGGLDGLLRLIDCNGGY-NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQL  351 (542)
Q Consensus       275 ~~L~~~~-~~~~~~-~~~~~~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  351 (542)
                      .+|+.+. +..... ....+++++|+.+|.++... .+..|+++|.||+..+++..+.+++.|+++.|+.++.+++ +.+
T Consensus       561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~-~~V  639 (810)
T 3now_A          561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-LYL  639 (810)
T ss_dssp             HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC-TTH
T ss_pred             HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHH
Confidence            9998653 433210 01136999999999865443 4568999999999998888999999999999999999854 589


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------h-CCCchhhHHh
Q psy12594        352 QVAAAWTLGQIGKHSVDNVTALCE-ENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------K-CENPKELEQM  419 (542)
Q Consensus       352 ~~~a~~~L~~l~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------~-~~~i~~L~~l  419 (542)
                      +..|+++|+||+.++ +.+..+.+ .|.++.|+.++.++  +.++|++|+|+|+|+..          . .+.+++|+.+
T Consensus       640 q~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~L  716 (810)
T 3now_A          640 TRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL  716 (810)
T ss_dssp             HHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHH
Confidence            999999999997654 45556665 78999999999986  57999999999999963          1 4678999999


Q ss_pred             hcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--C---CCcHH-HHHHHHhccCc
Q psy12594        420 LLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--P---TPEIA-PHLKTINACFP  480 (542)
Q Consensus       420 L~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~---~~~~~-~a~~~l~~~~~  480 (542)
                      |. +.++++.+.+++++.|++..+++..+.+++.|++++|..+.  +   +.++. .|.+.|+.+..
T Consensus       717 L~-s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          717 IA-NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HC-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            99 99999999999999999987777889999999999999997  3   23344 36666655543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.4e-42  Score=363.93  Aligned_cols=445  Identities=16%  Similarity=0.146  Sum_probs=387.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcCC-ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLADK-VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK   91 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~   91 (542)
                      ...|..++.+|.+++.+..++..+... |+++.|+.+|.+. ++.++..|+.+|.+++  ..++.+..+.+.|+++.|++
T Consensus        28 ~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls--~~~~~~~~i~~~g~i~~Lv~  105 (644)
T 2z6h_A           28 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS--HHREGLLAIFKSGGIPALVK  105 (644)
T ss_dssp             HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT--TSHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh--cChhhHHHHHHcCCHHHHHH
Confidence            457889999999999998888888765 8999999999865 8999999999999999  88779999999999999999


Q ss_pred             hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594         92 DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP  170 (542)
Q Consensus        92 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  170 (542)
                      +|+++++.++..++++|.+++...+.... +.+.|+++.|+++|+++++.++..++.+|.+++..+++.+..+.+.|+++
T Consensus       106 lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~  185 (644)
T 2z6h_A          106 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ  185 (644)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChH
Confidence            99999999999999999999987666666 88899999999999999999999999999999988899999999999999


Q ss_pred             HHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594        171 PLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD  249 (542)
Q Consensus       171 ~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  249 (542)
                      .|++++++.+ ..++..++.+|.|++. +++.+..+++.|+++.|+.++.+.+.++++.++|+|.+++...+..   ...
T Consensus       186 ~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~  261 (644)
T 2z6h_A          186 ALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGM  261 (644)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSC
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhh
Confidence            9999999875 6788999999999997 6778999999999999999999999999999999999999875431   222


Q ss_pred             hchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC--ccchHHHHHHHhHhhcCCh--
Q psy12594        250 GATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG--GYNSLPAIMALGYMSAQSE--  324 (542)
Q Consensus       250 ~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~--  324 (542)
                      .++++ |+.++.+.+++++..++++|.+|+.+.+...+.+.+.|+++.|+.++.+.+  +.++..|+++|++|+..++  
T Consensus       262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~  341 (644)
T 2z6h_A          262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA  341 (644)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH
Confidence            47899 999999999999999999999999988888888899999999999998743  6899999999999987544  


Q ss_pred             -HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHH-----
Q psy12594        325 -QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSK-----  398 (542)
Q Consensus       325 -~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~-----  398 (542)
                       .....+.+.++++.|+.+|.++.+..++..|+|+|+|++.++ +....+++.|+++.|+.++.+++  .++|++     
T Consensus       342 ~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~~~i~~Lv~lL~~~~--~~vr~~a~~al  418 (644)
T 2z6h_A          342 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAH--QDTQRRTSMGG  418 (644)
T ss_dssp             HHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHH--HHHTTC-----
T ss_pred             HHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHHHHHHHcCCHHHHHHHHhccc--hhhhhHhhhcc
Confidence             234457788999999999998655689999999999997764 45588899999999999999752  345544     


Q ss_pred             -----------------HHHHHHHH---------HhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHH
Q psy12594        399 -----------------CKNALNIL---------IPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVT  452 (542)
Q Consensus       399 -----------------a~~aL~nl---------~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~  452 (542)
                                       ++.+|+++         +...+.+++|+.+|. +.+++++..++++|.++.. +++.+..+.+
T Consensus       419 ~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~-~~~~~~~i~~  496 (644)
T 2z6h_A          419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEA  496 (644)
T ss_dssp             -----CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHHT-SHHHHHHHHH
T ss_pred             ccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence                             44455544         335688999999999 9999999999999999875 4677889999


Q ss_pred             hcchHHhhhcC--CCCcHH
Q psy12594        453 SHCLRKVQEIE--PTPEIA  469 (542)
Q Consensus       453 ~g~~~~l~~l~--~~~~~~  469 (542)
                      .|+++.|..+.  ++.+++
T Consensus       497 ~g~l~~L~~ll~~~~~~vr  515 (644)
T 2z6h_A          497 EGATAPLTELLHSRNEGVA  515 (644)
T ss_dssp             TTCHHHHHHHTTCSCHHHH
T ss_pred             cCChhHHHHHHcCCCHHHH
Confidence            99999999998  566664

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.4e-41  Score=355.16  Aligned_cols=454  Identities=15%  Similarity=0.113  Sum_probs=390.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK   91 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~   91 (542)
                      ...|..++..|.+++.++.++..+... |+++.|+.+|.+ +++.++..|+.+|.+++  ..++.+..+.+.|+++.|++
T Consensus        31 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls--~~~~~~~~i~~~g~i~~L~~  108 (529)
T 1jdh_A           31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS--HHREGLLAIFKSGGIPALVK  108 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--TSHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH--cCchhHHHHHHcCCHHHHHH
Confidence            456889999999999988888777755 899999999975 48999999999999999  88889999999999999999


Q ss_pred             hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594         92 DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP  170 (542)
Q Consensus        92 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  170 (542)
                      +|+++++.++..++++|.+++..++..+. +.+.|+++.|++++.++++.++..++.+|.+++..+++.+..+.+.|+++
T Consensus       109 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~  188 (529)
T 1jdh_A          109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ  188 (529)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence            99999999999999999999988666666 78899999999999999999999999999999998899999999999999


Q ss_pred             HHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594        171 PLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD  249 (542)
Q Consensus       171 ~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  249 (542)
                      .|++++++++ ...+..++.+|.+++. +++.+..+.+.|+++.|+.++.++++++++.++|+|.+++...+..   ...
T Consensus       189 ~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~  264 (529)
T 1jdh_A          189 ALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGM  264 (529)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCC
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHH
Confidence            9999998765 6677788999999998 6778889999999999999999999999999999999999876432   123


Q ss_pred             hchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCChH-
Q psy12594        250 GATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSEQ-  325 (542)
Q Consensus       250 ~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~-  325 (542)
                      .++++ |+.++.+.+++++..++++|++|+.++++..+.+.+.|+++.|++++.+.  ++.++..|+++|+|++.++++ 
T Consensus       265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~  344 (529)
T 1jdh_A          265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA  344 (529)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH
Confidence            47899 99999999999999999999999998888888899999999999999873  367999999999999886543 


Q ss_pred             --HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594        326 --IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL  403 (542)
Q Consensus       326 --~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL  403 (542)
                        ....+.+.++++.|+.++.++.++.++..++|+|+|++.++ +....+.+.|+++.|+.++.++  ++++|++|+|++
T Consensus       345 ~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~l  421 (529)
T 1jdh_A          345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRA--HQDTQRRTSMGG  421 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHH--HHHHC-------
T ss_pred             HHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHH--hHHHHHHHhccc
Confidence              45678888999999999998665689999999999997754 4567888999999999999976  468999999988


Q ss_pred             HH----------------------H---------HhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHH
Q psy12594        404 NI----------------------L---------IPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVT  452 (542)
Q Consensus       404 ~n----------------------l---------~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~  452 (542)
                      .|                      +         +.+.+.++.|+.++. +.+++++..+.++|.++.. ++..++.+.+
T Consensus       422 ~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~-~~~~~v~~~a~~~l~~l~~-~~~~~~~i~~  499 (529)
T 1jdh_A          422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEA  499 (529)
T ss_dssp             ----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred             CchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHc-CCchHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence            87                      1         234678999999999 9999999999999999874 5777889999


Q ss_pred             hcchHHhhhcC--CCCcHH-HHHHHHhcc
Q psy12594        453 SHCLRKVQEIE--PTPEIA-PHLKTINAC  478 (542)
Q Consensus       453 ~g~~~~l~~l~--~~~~~~-~a~~~l~~~  478 (542)
                      .|+++.|..++  ++++++ .|..+|.++
T Consensus       500 ~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          500 EGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             TTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            99999999998  677777 477777653

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.5e-41  Score=351.58  Aligned_cols=399  Identities=17%  Similarity=0.224  Sum_probs=356.4

Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-h-hhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE-R-CAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHF  159 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~-~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~  159 (542)
                      ...++.++..|.++++.++..|++.|++++.... . ...++..|+++.|+++|.+++ +.++..|+|+|.+++..++..
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            3468999999999999999999999999976543 3 344889999999999999887 999999999999999988999


Q ss_pred             HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh-cCCCHHHHHHHHHHHHHHhc
Q psy12594        160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL-NNDEVNVKADAFLCLADIAK  238 (542)
Q Consensus       160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~  238 (542)
                      +..+++.|+++.|+.+|.++++.++..|+|+|+||+.+++..+..+.+.|+++.|+.++ .+.++.++..++|+|++|+.
T Consensus       153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~  232 (528)
T 4b8j_A          153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR  232 (528)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999998898999999999999999999 56789999999999999998


Q ss_pred             CChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHh
Q psy12594        239 DSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG  317 (542)
Q Consensus       239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~  317 (542)
                      ..+. .......++++ |+.++.++++.++..++++|.+++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus       233 ~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~  311 (528)
T 4b8j_A          233 GKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG  311 (528)
T ss_dssp             SSSC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence            8643 23334578999 999999999999999999999999888888888889999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHH
Q psy12594        318 YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKS  397 (542)
Q Consensus       318 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~  397 (542)
                      +++.+++...+.+++.++++.|+.++.++.++.++..|+|+|+|++.++++....+++.|+++.|+.+|.++  ++++|.
T Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~  389 (528)
T 4b8j_A          312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKK  389 (528)
T ss_dssp             HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHH
Confidence            999999999999999999999999999863569999999999999998999999999999999999999987  579999


Q ss_pred             HHHHHHHHHHhh-----------CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh-----------hhhHHHHhcc
Q psy12594        398 KCKNALNILIPK-----------CENPKELEQMLLGNVSEELLASILCAFAKILPCDPV-----------ARRSFVTSHC  455 (542)
Q Consensus       398 ~a~~aL~nl~~~-----------~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~-----------~~~~~~~~g~  455 (542)
                      .|+|+|+|+...           .+.+++|+.+|. +.+++++..++++|.+++..++.           ....+.+.||
T Consensus       390 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  468 (528)
T 4b8j_A          390 EAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLI-CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG  468 (528)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence            999999999754           478999999999 99999999999999999876644           4567889999


Q ss_pred             hHHhhhcC--CCCcHH-HHHHHHhccCccchhc
Q psy12594        456 LRKVQEIE--PTPEIA-PHLKTINACFPNEVIH  485 (542)
Q Consensus       456 ~~~l~~l~--~~~~~~-~a~~~l~~~~~~~~~~  485 (542)
                      ++++..++  ++.+++ .|..+|++||+.+...
T Consensus       469 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~  501 (528)
T 4b8j_A          469 LEKIENLQSHDNNEIYEKAVKILEAYWMDEEDD  501 (528)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence            99999998  677777 5899999999865444

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.1e-41  Score=349.94  Aligned_cols=398  Identities=16%  Similarity=0.223  Sum_probs=355.7

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      .++.+++.+.|+|+..|..|+..++++.+.+..+..+.+++.|++|.|+++|++ +++.++..|+++|+|++.++++...
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            488999999999999999999999999865555667888999999999999975 5699999999999999999988888


Q ss_pred             -HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-----HhHHHHHHHHHHHH
Q psy12594        121 -LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-----LSLKHAAAFALDGI  194 (542)
Q Consensus       121 -~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~nl  194 (542)
                       +++.|++|.|+.+|+++++++++.|+|+|++++.+++.++..+.+.|+++.|+.++..++     ..+++.++|+|.|+
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence             999999999999999999999999999999999999999999999999999999998765     45788999999999


Q ss_pred             hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHH
Q psy12594        195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATL  273 (542)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~  273 (542)
                      +.+...........+++|.|+.++.+.+++++..++|+|++|+....+....+...|+++ |+.+|.+++..++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            986543333333367889999999999999999999999999998877778888999999 9999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHH
Q psy12594        274 LRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV  353 (542)
Q Consensus       274 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~  353 (542)
                      |++++.+++.....+.+.|+++.|+.++.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.+++ ..++.
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHH
Confidence            99999999988888999999999999999999999999999999999999999999999999999999999864 69999


Q ss_pred             HHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------------hCCCchhh
Q psy12594        354 AAAWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------------KCENPKEL  416 (542)
Q Consensus       354 ~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------------~~~~i~~L  416 (542)
                      .|+|+|+|++.+ ++++...+++.|+++.|+++|.++  +.+++..+.++|.|+++                .++.++.|
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i  454 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI  454 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHH
Confidence            999999999864 678888999999999999999987  56999999999999853                35667777


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594        417 EQMLLGNVSEELLASILCAFAKILPCD  443 (542)
Q Consensus       417 ~~lL~~~~~~~v~~~~l~~l~~ll~~~  443 (542)
                      ..|.. +.+.++.+.+...|.+.+..+
T Consensus       455 e~Lq~-~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          455 EALQR-HENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             HHGGG-CSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHc-CCCHHHHHHHHHHHHHHCCCc
Confidence            77777 778888888888888776543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.5e-40  Score=345.68  Aligned_cols=398  Identities=16%  Similarity=0.216  Sum_probs=357.3

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ..++.++..+.|+|+..+..|+..++++.+.+..+..+.+++.|++|.|+++|.. +++.++..|+++|++++.++++..
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            3588899999999999999999999999855555667888999999999999975 669999999999999999998887


Q ss_pred             h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-----HhHHHHHHHHHHH
Q psy12594        120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-----LSLKHAAAFALDG  193 (542)
Q Consensus       120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~n  193 (542)
                      . +++.|++|.|+.+|.++++.+++.|+|+|++++.+++.++..+++.|+++.|+.++..++     ..+.+.++|+|.|
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            7 999999999999999999999999999999999999999999999999999999998764     4578899999999


Q ss_pred             HhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHH
Q psy12594        194 IVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAAT  272 (542)
Q Consensus       194 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~  272 (542)
                      ++.+...........+++|.|+.++.+.+++++..++|+|++++....+....+...|+++ |+.+|.++++.++..++.
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            9986544433333467889999999999999999999999999999887888888999999 999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHH
Q psy12594        273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ  352 (542)
Q Consensus       273 ~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~  352 (542)
                      +|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.++. ..++
T Consensus       316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~  394 (529)
T 3tpo_A          316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQ  394 (529)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHH
T ss_pred             HHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHH
Confidence            999999999988888999999999999999999999999999999999999999999999999999999999864 5899


Q ss_pred             HHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------------hCCCchh
Q psy12594        353 VAAAWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------------KCENPKE  415 (542)
Q Consensus       353 ~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------------~~~~i~~  415 (542)
                      ..|+|+|+|++.+ ++++...+++.|+++.|+++|.++  +.+++..+.++|.|+++                .+|.+..
T Consensus       395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~  472 (529)
T 3tpo_A          395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK  472 (529)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence            9999999999864 678888999999999999999987  56999999999999853                3577888


Q ss_pred             hHHhhcCCCCHHHHHHHHHHHHhhCCC
Q psy12594        416 LEQMLLGNVSEELLASILCAFAKILPC  442 (542)
Q Consensus       416 L~~lL~~~~~~~v~~~~l~~l~~ll~~  442 (542)
                      |..|.. +.+.++.+.+...|.+.+..
T Consensus       473 ie~Lq~-~~n~~i~~~A~~iie~yf~~  498 (529)
T 3tpo_A          473 IEALQR-HENESVYKASLNLIEKYFSV  498 (529)
T ss_dssp             HTGGGG-CSSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHc-CCCHHHHHHHHHHHHHHCCC
Confidence            888877 88888999888888877654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=9e-42  Score=359.36  Aligned_cols=419  Identities=15%  Similarity=0.082  Sum_probs=354.1

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcC----cHHHHHH
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERN----LVALVLK   91 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~----~l~~Lv~   91 (542)
                      .+..++.++.+++.++.+|..+.+.|+ |.|+.+++++++.+|..|+.+|+++.+....+......+.|    .++.+++
T Consensus       306 ~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~  384 (810)
T 3now_A          306 QQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRR  384 (810)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHH
Confidence            466889999999999999999999876 99999999999999999999999998322111111112233    3566777


Q ss_pred             hhccC--CHHHHHHHHHHHHHHhcCChhhhhH-hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-----------
Q psy12594         92 DLTKQ--NKHYKKTALHMLTCVAQQDERCAGL-IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK-----------  157 (542)
Q Consensus        92 ~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----------  157 (542)
                      +|.++  +++++..|++.|.+++...+....+ .+.|++|.|+.+|+++++.++..++++|.|++.+.+           
T Consensus       385 lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~l  464 (810)
T 3now_A          385 FLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIEL  464 (810)
T ss_dssp             HHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGG
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHH
Confidence            88877  8899999999999999776555554 467999999999999999999999999999997542           


Q ss_pred             ------------------HHH---HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHH
Q psy12594        158 ------------------HFA---ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIK  216 (542)
Q Consensus       158 ------------------~~~---~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~  216 (542)
                                        ..+   +.+++.|++|.|+++++++++.+++.|+|+|.||+. +++.+..+++.|++|.|+.
T Consensus       465 a~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~  543 (810)
T 3now_A          465 AKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLR  543 (810)
T ss_dssp             TTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHH
T ss_pred             HHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHH
Confidence                              223   788999999999999999999999999999999997 6789999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCC-hhhHH-HHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcC
Q psy12594        217 ALNNDEVNVKADAFLCLADIAKDS-PSLAS-TIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAG  292 (542)
Q Consensus       217 ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~-~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~  292 (542)
                      ++.++++..++.|+|+|++|+... +.... .....++++ |+.+|.++ +...+..|+++|.||+.++++..+.+++.|
T Consensus       544 LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG  623 (810)
T 3now_A          544 MALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ  623 (810)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            999999999999999999998753 22111 001236888 99999866 445567899999999999888888899999


Q ss_pred             CHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh-hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHH
Q psy12594        293 GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE-LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT  371 (542)
Q Consensus       293 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  371 (542)
                      +++.|+.++.++++.++.+|+++|+|++.+++... .+.+ .+.++.|+.++.++ +..++.+|+|+|+|++.+++...+
T Consensus       624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~-~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~  701 (810)
T 3now_A          624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK-MFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCE  701 (810)
T ss_dssp             HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH-HHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH-HHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999998765444 4444 78999999999985 569999999999999988889999


Q ss_pred             HHHH-cCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------hCCCchhhHHhhcCCC---CHHHHHHHHHHHH
Q psy12594        372 ALCE-ENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------KCENPKELEQMLLGNV---SEELLASILCAFA  437 (542)
Q Consensus       372 ~l~~-~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------~~~~i~~L~~lL~~~~---~~~v~~~~l~~l~  437 (542)
                      .+++ .|+++.|+.++.++  ++++|+.|+|+|.|+..          .+|.+++|+.+++ .+   ++++...++.+|.
T Consensus       702 ~ii~~~g~I~~Lv~LL~s~--d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~-~~d~~~~~i~e~Al~aL~  778 (810)
T 3now_A          702 KILAIASWLDILHTLIANP--SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ-LPDDTRAKAREVATQCLA  778 (810)
T ss_dssp             HHHTSTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC-CTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh-CcccCcHHHHHHHHHHHH
Confidence            9998 89999999999987  57999999999999953          3678999999997 44   6799999999998


Q ss_pred             hhCC
Q psy12594        438 KILP  441 (542)
Q Consensus       438 ~ll~  441 (542)
                      +++.
T Consensus       779 ~ll~  782 (810)
T 3now_A          779 AAER  782 (810)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=9.1e-40  Score=340.78  Aligned_cols=399  Identities=15%  Similarity=0.187  Sum_probs=356.4

Q ss_pred             hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChH
Q psy12594         82 ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKH  158 (542)
Q Consensus        82 ~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~  158 (542)
                      ..+.++.++..|.++++.++..|+..|.++...  .+....+++.|+++.|+++|.++ ++.++..|+++|.+++..++.
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            356899999999999999999999999999754  33344488899999999999997 899999999999999998888


Q ss_pred             HHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594        159 FAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK  238 (542)
Q Consensus       159 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  238 (542)
                      .+..+++.|+++.|+++|+++++.+++.|+|+|++|+.++++.+..+...|+++.|+.++.+.+++++..++|+|++|+.
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence            89999999999999999999999999999999999999888899999999999999999999999999999999999998


Q ss_pred             CChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHh
Q psy12594        239 DSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG  317 (542)
Q Consensus       239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~  317 (542)
                      ............++++ |+.++.++++.++..++++|.+|+...+...+.+.+.++++.|+.++.++++.++..|+++|+
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~  324 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  324 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence            7522334445578999 999999999999999999999999988888887888999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHH
Q psy12594        318 YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKS  397 (542)
Q Consensus       318 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~  397 (542)
                      +++.+++...+.+++.++++.|+.++.++ +..++..|+|+|++++.++++..+.+++.++++.|+.+|.++  ++++|.
T Consensus       325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~  401 (530)
T 1wa5_B          325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA--EYKTKK  401 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHH
T ss_pred             HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHH
Confidence            99999998888899999999999999986 569999999999999988999899999999999999999876  579999


Q ss_pred             HHHHHHHHHHhh-------------CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh-----------hhhHHHHh
Q psy12594        398 KCKNALNILIPK-------------CENPKELEQMLLGNVSEELLASILCAFAKILPCDPV-----------ARRSFVTS  453 (542)
Q Consensus       398 ~a~~aL~nl~~~-------------~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~-----------~~~~~~~~  453 (542)
                      .|+|+|+|++..             .+.++.|+.+|. +.+++++..++++|.+++...+.           ....|.+.
T Consensus       402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~  480 (530)
T 1wa5_B          402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA  480 (530)
T ss_dssp             HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHc
Confidence            999999999653             357899999999 88999999999999999876543           34568899


Q ss_pred             cchHHhhhcC--CCCcHH-HHHHHHhccCccchh
Q psy12594        454 HCLRKVQEIE--PTPEIA-PHLKTINACFPNEVI  484 (542)
Q Consensus       454 g~~~~l~~l~--~~~~~~-~a~~~l~~~~~~~~~  484 (542)
                      ||++.|..++  ++..++ +|..+|++||+.+..
T Consensus       481 g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~  514 (530)
T 1wa5_B          481 GGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  514 (530)
T ss_dssp             THHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence            9999999998  677776 599999999976543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.6e-39  Score=351.36  Aligned_cols=458  Identities=15%  Similarity=0.128  Sum_probs=393.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcCC-ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLADK-VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK   91 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~   91 (542)
                      ...|..++.+|.+++.+..++..+.+. |+++.|+.+|+++ ++.++..|+.+|.+|+  ..++.+..+.+.|+++.|+.
T Consensus       164 ~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls--~~~~~~~~i~~~g~I~~Lv~  241 (780)
T 2z6g_A          164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS--HHREGLLAIFKSGGIPALVN  241 (780)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHh--CCchhHHHHHHcCCHHHHHH
Confidence            346888999999999988888877754 8999999999754 8999999999999999  88777889999999999999


Q ss_pred             hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594         92 DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP  170 (542)
Q Consensus        92 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  170 (542)
                      +|+++++.++..|+++|.+++...+..+. +.+.|+++.|+.+|.+.+..++..++.+|.+++..+++.+..+.+.|+++
T Consensus       242 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~  321 (780)
T 2z6g_A          242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ  321 (780)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence            99999999999999999999988767777 77899999999999999999999999999999988889999999999999


Q ss_pred             HHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594        171 PLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD  249 (542)
Q Consensus       171 ~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  249 (542)
                      .|++++++.+ ...+..++.+|.+|+. .++.+..+++.|+++.|+.++.+.+.++++.++|+|.+|+......   ...
T Consensus       322 ~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~  397 (780)
T 2z6g_A          322 ALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGM  397 (780)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhh
Confidence            9999999876 5567788999999997 6678888999999999999999999999999999999999876431   123


Q ss_pred             hchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC-Cc-cchHHHHHHHhHhhcCChH-
Q psy12594        250 GATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN-GG-YNSLPAIMALGYMSAQSEQ-  325 (542)
Q Consensus       250 ~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~-~~~~~a~~~L~~l~~~~~~-  325 (542)
                      .++++ |+.+|.+.++.++..++++|.+|+.+.+...+.+.+.++++.|+.+|.+. +. .++..|+++|++|+..+++ 
T Consensus       398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~  477 (780)
T 2z6g_A          398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA  477 (780)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH
Confidence            57899 99999999999999999999999999888888888999999999999874 33 7999999999999875544 


Q ss_pred             --HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC------------
Q psy12594        326 --IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV------------  391 (542)
Q Consensus       326 --~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------------  391 (542)
                        ....+...++++.|+.++.++....++..|+|+|+|++.+ ++....+.+.|+++.|+.+|.++++            
T Consensus       478 ~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n  556 (780)
T 2z6g_A          478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  556 (780)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcccc
Confidence              2456778899999999999876568999999999999875 4556788899999999999987521            


Q ss_pred             --------ChHHHHHHHHHHHHH---------HhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhc
Q psy12594        392 --------SDNLKSKCKNALNIL---------IPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSH  454 (542)
Q Consensus       392 --------~~~v~~~a~~aL~nl---------~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g  454 (542)
                              .++++..++.+|+++         +...+.+++|+.+|. +.+++++..++.+|.++.. ++..+..|.+.|
T Consensus       557 q~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g  634 (780)
T 2z6g_A          557 QQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG  634 (780)
T ss_dssp             -CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGG-CSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTT
T ss_pred             chhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCC
Confidence                    134555666666665         335788999999999 9999999999999999864 577788999999


Q ss_pred             chHHhhhcC--CCCcHHH-HHHHHhccCc
Q psy12594        455 CLRKVQEIE--PTPEIAP-HLKTINACFP  480 (542)
Q Consensus       455 ~~~~l~~l~--~~~~~~~-a~~~l~~~~~  480 (542)
                      +++.|..+.  ++..+++ |..+|.++..
T Consensus       635 ~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          635 ATAPLTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            999999998  6666763 6666666544

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.9e-39  Score=330.47  Aligned_cols=417  Identities=19%  Similarity=0.218  Sum_probs=358.0

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc-CcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCChhhh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~-~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      .++.|+..++++++.+|..|+..|+++.+....+....+.+. |+++.|+++|+++ ++.++..++++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            488999999999999999999999998742232223446676 9999999999987 89999999999999999877776


Q ss_pred             h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcC
Q psy12594        120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~  197 (542)
                      . +++.|+++.|+++|+++++.+|..|+++|++++...+..+..+++.|+++.|++++++ ++..++..++|+|++++.+
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            6 8889999999999999999999999999999999888899999999999999999996 6799999999999999986


Q ss_pred             C-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594        198 S-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR  275 (542)
Q Consensus       198 ~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~  275 (542)
                      . +.....++ .++++.|+.++.+.++.++..++|+|.+++...++....+...++++ |+.++.++++.++..++++|.
T Consensus       181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  259 (450)
T 2jdq_A          181 KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG  259 (450)
T ss_dssp             SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence            5 43333344 78999999999999999999999999999998777777788889999 999999999999999999999


Q ss_pred             HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594        276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA  355 (542)
Q Consensus       276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  355 (542)
                      +++.+.+...+.+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+++.++++.|+.++.++ ++.++..|
T Consensus       260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a  338 (450)
T 2jdq_A          260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEA  338 (450)
T ss_dssp             HHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred             HHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHH
Confidence            99998888877788889999999999999999999999999999998888888899899999999999985 46899999


Q ss_pred             HHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHH
Q psy12594        356 AWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILC  434 (542)
Q Consensus       356 ~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~  434 (542)
                      +|+|+|++.+ +++..+.+++.|+++.|+.++.++  +.+++..|+++|.+++...+...    .+.             
T Consensus       339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~----~~~-------------  399 (450)
T 2jdq_A          339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM--DSKIVQVALNGLENILRLGEQEA----KRN-------------  399 (450)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHH----HHS-------------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhh----hcc-------------
Confidence            9999999875 678888889999999999999976  57999999999999986531000    000             


Q ss_pred             HHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHH-HHHHHHhccCccchh
Q psy12594        435 AFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIA-PHLKTINACFPNEVI  484 (542)
Q Consensus       435 ~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~-~a~~~l~~~~~~~~~  484 (542)
                           -....+....|.+.||++.|..++  ++..++ .|..+|++||+++..
T Consensus       400 -----~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  447 (450)
T 2jdq_A          400 -----GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDE  447 (450)
T ss_dssp             -----CSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC--
T ss_pred             -----ccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence                 001123456788999999999987  666676 599999999976643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.9e-38  Score=328.52  Aligned_cols=398  Identities=18%  Similarity=0.247  Sum_probs=356.1

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC-HHHHHHHHHHHHHHhcCChhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN-KHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ..+|.|+..|.++++.++..|+..|.++++....+....+.+.|+++.|+++|.+++ +.++..|+++|.+++.++++..
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            458999999999999999999999999984333466778889999999999999876 9999999999999999887887


Q ss_pred             h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcC
Q psy12594        120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      . +++.|+++.|+.+|.++++.++..|+|+|++++...+.++..+.+.|+++.|+.++ .+.++.++..++|+|.+|+..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            7 88999999999999999999999999999999998899999999999999999999 567899999999999999996


Q ss_pred             CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                      .+...... ..++++.|+.++.+.+++++..++|+|++++...+.....+...++++ |+.+|.++++.++..++++|++
T Consensus       234 ~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n  312 (528)
T 4b8j_A          234 KPQPSFEQ-TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN  312 (528)
T ss_dssp             SSCCCHHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCcHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence            54444333 489999999999999999999999999999988876667888889999 9999999999999999999999


Q ss_pred             HhcCChHHHHHHHhcCCHHHHHHhhhcC-CccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594        277 MCKHNLRLANLVVLAGGLDGLLRLIDCN-GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA  355 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  355 (542)
                      ++.+.+...+.+.+.|+++.|+.+|.++ ++.++..|+++|+|++.+++.....+++.++++.|+.++.++ +..++..|
T Consensus       313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a  391 (528)
T 4b8j_A          313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEA  391 (528)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHH
Confidence            9998888888888999999999999998 889999999999999998888888999999999999999985 56999999


Q ss_pred             HHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh---------------------CCCc
Q psy12594        356 AWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK---------------------CENP  413 (542)
Q Consensus       356 ~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~---------------------~~~i  413 (542)
                      +|+|+|++.+ +++....+.+.|+++.|+.+|.++  +++++..+.++|.+++..                     ++.+
T Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  469 (528)
T 4b8j_A          392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGL  469 (528)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcH
Confidence            9999999876 688899999999999999999986  579999999999999632                     3446


Q ss_pred             hhhHHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594        414 KELEQMLLGNVSEELLASILCAFAKILPCD  443 (542)
Q Consensus       414 ~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~  443 (542)
                      +.+..+.. +.++++...+...+.++....
T Consensus       470 ~~l~~L~~-~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          470 EKIENLQS-HDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHHGGG-CSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHCCCc
Confidence            77777877 788889999999888887653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.6e-38  Score=327.89  Aligned_cols=402  Identities=15%  Similarity=0.200  Sum_probs=357.8

Q ss_pred             hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCChh
Q psy12594         39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDER  117 (542)
Q Consensus        39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~  117 (542)
                      ..+.++.|+..|+++++.++..|+..|.++.+....+....+.+.|+++.|+++|.++ ++.++..|+++|.+++.+.++
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            3578999999999999999999999999998433344556778999999999999987 899999999999999998877


Q ss_pred             hhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594        118 CAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       118 ~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~  196 (542)
                      ... +++.|+++.|+.+|.++++.++..|+|+|++++..++..+..+...|+++.|+.++.++++.++..++|+|.+|+.
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence            777 8899999999999999999999999999999999888999999999999999999999899999999999999998


Q ss_pred             CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594        197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR  275 (542)
Q Consensus       197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~  275 (542)
                      +...........++++.|+.++.+.++.++..++|+|.+|+...++....+.+.++++ |+.+|.++++.++..++++|.
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~  324 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  324 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence            6522333444589999999999999999999999999999998777777888889999 999999999999999999999


Q ss_pred             HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594        276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA  355 (542)
Q Consensus       276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  355 (542)
                      +++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.++++.|+.++.++ +..++..|
T Consensus       325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a  403 (530)
T 1wa5_B          325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEA  403 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHH
Confidence            99998888888888899999999999999999999999999999998888888889999999999999874 46999999


Q ss_pred             HHHHHHhhcC-Ch--HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh---------------------CC
Q psy12594        356 AWTLGQIGKH-SV--DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK---------------------CE  411 (542)
Q Consensus       356 ~~~L~~l~~~-~~--~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~---------------------~~  411 (542)
                      +|+|++++.+ .+  +..+.+.+.|+++.|+.++.++  +++++..|+++|.+++..                     ++
T Consensus       404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g  481 (530)
T 1wa5_B          404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG  481 (530)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence            9999999875 44  7888899999999999999976  579999999999999642                     23


Q ss_pred             CchhhHHhhcCCCCHHHHHHHHHHHHhhCCCCh
Q psy12594        412 NPKELEQMLLGNVSEELLASILCAFAKILPCDP  444 (542)
Q Consensus       412 ~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~  444 (542)
                      .++.|..|+. +.++++...+...|.+++...+
T Consensus       482 ~~~~L~~L~~-~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          482 GMEKIFNCQQ-NENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHHHHHGGGG-CSCHHHHHHHHHHHHHHSSSCC
T ss_pred             cHHHHHHHHc-CCCHHHHHHHHHHHHHHCCccc
Confidence            4677788888 8888999999999999987653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=9e-38  Score=326.21  Aligned_cols=434  Identities=13%  Similarity=0.094  Sum_probs=368.9

Q ss_pred             HHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc-CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcC
Q psy12594         37 LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQ  114 (542)
Q Consensus        37 l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~-~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~  114 (542)
                      ....|++|.|+.+|+++++.+|..|+.+|.+++  .+++.+..+... |.++.+++.|.+ +++.++..++.+|.+++..
T Consensus        13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~--~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~   90 (529)
T 1jdh_A           13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH   90 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHH--TSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHH--cCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999999  887777666654 899999999986 4899999999999999876


Q ss_pred             Chhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHH
Q psy12594        115 DERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG  193 (542)
Q Consensus       115 ~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n  193 (542)
                      .+ .+. +.+.|+++.|+++|+++++.++..++++|.+++..++..+..+.+.|++|.|+++++++++.++..++.+|.+
T Consensus        91 ~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~  169 (529)
T 1jdh_A           91 RE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  169 (529)
T ss_dssp             HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             ch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            54 555 8899999999999999999999999999999998777778889899999999999999999999999999999


Q ss_pred             HhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594        194 IVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAA  271 (542)
Q Consensus       194 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~  271 (542)
                      ++..+++.+..+.+.|+++.|+.++++. +...+..++.+|++++... ..+..+.+.++++ |+.++.++++.++..++
T Consensus       170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~  248 (529)
T 1jdh_A          170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL  248 (529)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence            9998899999999999999999999865 5567788999999999765 5788888899999 99999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-hhh
Q psy12594        272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-KEQ  350 (542)
Q Consensus       272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~  350 (542)
                      |+|.+++...+...   ...++++.|+.++.++++.++..++++|++++.++++....+.+.++++.|+.++.+.+ ++.
T Consensus       249 ~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~  325 (529)
T 1jdh_A          249 WTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED  325 (529)
T ss_dssp             HHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence            99999998764321   12478999999999999999999999999999988888999999999999999998633 268


Q ss_pred             HHHHHHHHHHHhhcCChH---HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh---------hCCCchhhHH
Q psy12594        351 LQVAAAWTLGQIGKHSVD---NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP---------KCENPKELEQ  418 (542)
Q Consensus       351 v~~~a~~~L~~l~~~~~~---~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~---------~~~~i~~L~~  418 (542)
                      ++..|+++|+|++.++++   .+..+.+.|+++.|+.+|.+++ ++.+++.++|+|+|+..         +.+.++.|+.
T Consensus       326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~  404 (529)
T 1jdh_A          326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ  404 (529)
T ss_dssp             HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc-chHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHH
Confidence            999999999999876544   4667889999999999999864 36899999999999963         3567899999


Q ss_pred             hhcCCCCHHHHH----------------------HHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHH-HHHH
Q psy12594        419 MLLGNVSEELLA----------------------SILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIA-PHLK  473 (542)
Q Consensus       419 lL~~~~~~~v~~----------------------~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~-~a~~  473 (542)
                      +|. +.++++++                      .++.++.++.. .+.++..+.+.|+++.+..+.  +++.++ .+..
T Consensus       405 ll~-~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~  482 (529)
T 1jdh_A          405 LLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG  482 (529)
T ss_dssp             HHH-HHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHH-HHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCCchHHHHHHHH
Confidence            987 65555554                      45556666654 456777899999999999998  555566 4667


Q ss_pred             HHhccCc
Q psy12594        474 TINACFP  480 (542)
Q Consensus       474 ~l~~~~~  480 (542)
                      .+.++..
T Consensus       483 ~l~~l~~  489 (529)
T 1jdh_A          483 VLCELAQ  489 (529)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            7766653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=2.6e-38  Score=321.81  Aligned_cols=354  Identities=14%  Similarity=0.149  Sum_probs=305.7

Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA  205 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  205 (542)
                      .++.|+.+|++++++++..|+++|.+++..++..+..+.+.|++|.|+++|+++++.++..|+|+|.||+.++++.+..+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            58999999999999999999999999998888888899999999999999999999999999999999999779999999


Q ss_pred             hhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc--------C--------CChhHH
Q psy12594        206 SDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT--------Y--------PHGLVQ  267 (542)
Q Consensus       206 ~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~--------~--------~~~~v~  267 (542)
                      ++.|++|.|+++|. ++++++++.++|+|+||+.+ ++.+..+.+ |+++ |+.+|.        +        .++.+.
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            99999999999999 78999999999999999998 568888888 9999 999993        2        246778


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhc------CCccchHHHHHHHhHhhcC------------------
Q psy12594        268 KNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDC------NGGYNSLPAIMALGYMSAQ------------------  322 (542)
Q Consensus       268 ~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~------------------  322 (542)
                      +.++|+|+||+.+ ++..+.+.+. |+++.|+.++++      .+..+...++.+|.|++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 7788878887 999999999986      4567888999999988621                  


Q ss_pred             --------------------------------ChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH-
Q psy12594        323 --------------------------------SEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN-  369 (542)
Q Consensus       323 --------------------------------~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-  369 (542)
                                                      .+...+.+++.++++.|+.+|.++.++.+++.|+|+|+|++.++... 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            11233456677889999999998777899999999999999876432 


Q ss_pred             --H-HHHH-HcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh--------CCCchhhHHhhcCCCC------HHHHHH
Q psy12594        370 --V-TALC-EENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK--------CENPKELEQMLLGNVS------EELLAS  431 (542)
Q Consensus       370 --~-~~l~-~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~--------~~~i~~L~~lL~~~~~------~~v~~~  431 (542)
                        . +.++ +.|++|.|+++|.++  +++++++|+|+|.|+...        .+.+++|+++|. ..+      ++++..
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~--~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~-~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSG--NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLT-SHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTT-SCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCC--CHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhcc-CCCCCCCCcHHHHHH
Confidence              2 3444 689999999999987  579999999999999632        356899999998 553      368899


Q ss_pred             HHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--C-CCcHH-HHHHHHhccCccchhc
Q psy12594        432 ILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--P-TPEIA-PHLKTINACFPNEVIH  485 (542)
Q Consensus       432 ~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~-~~~~~-~a~~~l~~~~~~~~~~  485 (542)
                      ++++|.+++..++...+.+.+.||+++|..++  . ++.++ +|..+|++||.+...+
T Consensus       397 ~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence            99999999999988899999999999999998  4 56676 5999999999866554

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.7e-37  Score=316.62  Aligned_cols=365  Identities=13%  Similarity=0.124  Sum_probs=311.7

Q ss_pred             HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-C
Q psy12594         38 KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ-D  115 (542)
Q Consensus        38 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~  115 (542)
                      ...+.+|.|+.+|.+.++.+|..|+.+|.+++  .. ++.+..+.+.|++|.|+++|+++++.++..|+++|.+++.+ +
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La--~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~  122 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLC--YRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD  122 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHH--cCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence            35788999999999999999999999999999  74 88999999999999999999999999999999999999986 5


Q ss_pred             hhhhh-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc----------------
Q psy12594        116 ERCAG-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA----------------  177 (542)
Q Consensus       116 ~~~~~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~----------------  177 (542)
                      ++.+. +++.|+++.|+++|.+ .+.++++.++++|++|+. .+.++..+++ +++|.|++++.                
T Consensus       123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~  200 (584)
T 3l6x_A          123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKP  200 (584)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC---------
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccc
Confidence            67777 9999999999999997 578999999999999998 6677888886 56999999871                


Q ss_pred             --CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCC-ChHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCh-------
Q psy12594        178 --SPQLSLKHAAAFALDGIVKHSPELAESASDCD-VIPLLIKALNN------DEVNVKADAFLCLADIAKDSP-------  241 (542)
Q Consensus       178 --~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~-~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~-------  241 (542)
                        .+++.+++.|+++|.||+.++++.+..+.+.+ +++.|+.++++      .+...++.|+|+|+||+....       
T Consensus       201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~  280 (584)
T 3l6x_A          201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE  280 (584)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence              23579999999999999998888899888754 56799999874      467899999999999996521       


Q ss_pred             ------------------hhHHHHHhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhcCCh----HHHHHHHhcCCHHHH
Q psy12594        242 ------------------SLASTIADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCKHNL----RLANLVVLAGGLDGL  297 (542)
Q Consensus       242 ------------------~~~~~~~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~~~~----~~~~~~~~~~~i~~L  297 (542)
                                        ...+.+.+.++++ |+.+|.. .++.+++.|+++|.||+.+..    .....+.+.++++.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L  360 (584)
T 3l6x_A          281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI  360 (584)
T ss_dssp             C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred             hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence                              1112333456678 8999965 489999999999999987652    222344567899999


Q ss_pred             HHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-------hhhHHHHHHHHHHHhhcCChHHH
Q psy12594        298 LRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-------KEQLQVAAAWTLGQIGKHSVDNV  370 (542)
Q Consensus       298 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v~~~a~~~L~~l~~~~~~~~  370 (542)
                      +.+|.+++..++..|+++|+||+.+... . .++..++++.|+.+|.+++       ...++..|+++|+||+.+++++.
T Consensus       361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~-~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~  438 (584)
T 3l6x_A          361 ADLLTNEHERVVKAASGALRNLAVDARN-K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA  438 (584)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHTTCSC-H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCChhH-H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999987543 3 3557899999999999863       24788899999999999999999


Q ss_pred             HHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        371 TALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       371 ~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      +.+.+.|+++.|+.++.++..++.+++.|+|+|+|+..
T Consensus       439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            99999999999999999864467999999999999974

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=321.35  Aligned_cols=436  Identities=14%  Similarity=0.140  Sum_probs=373.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHh
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKD   92 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~   92 (542)
                      ...|..++.+|.+++.+++++..+.+.|+++.|+.+|+++++.++..|+.+|.+++  .. +..+..+.+.|+++.|+++
T Consensus        71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~--~~~~~~~~~v~~~g~i~~Lv~l  148 (644)
T 2z6h_A           71 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVAL  148 (644)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHSTTHHHHHHHTTHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH--hCcchhHHHHHHCCChHHHHHH
Confidence            45688899999999999889999999999999999999999999999999999999  54 5677788899999999999


Q ss_pred             hccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594         93 LTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALP  170 (542)
Q Consensus        93 L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  170 (542)
                      |+++++.++..++.+|.+++..+++.+. +.+.|+++.|++++++.+ ..++..++.+|.+++. .+..+..+++.|+++
T Consensus       149 L~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~  227 (644)
T 2z6h_A          149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ  227 (644)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHH
T ss_pred             HCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence            9999999999999999999987777777 889999999999998776 6788899999999996 667799999999999


Q ss_pred             HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy12594        171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADG  250 (542)
Q Consensus       171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  250 (542)
                      .|+.++++++..+++.++|+|.|++.+.+..   ....++++.|+.++.+.++++++.++|+|++|+..++..+..+.+.
T Consensus       228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~  304 (644)
T 2z6h_A          228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV  304 (644)
T ss_dssp             HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999999999999865321   1123678999999999999999999999999999887788889999


Q ss_pred             chHH-HHHhhcCC-C-hhHHHHHHHHHHHHhcCChH---HHHHHHhcCCHHHHHHhhhcCC-ccchHHHHHHHhHhhcCC
Q psy12594        251 ATTL-AVEHLTYP-H-GLVQKNAATLLRDMCKHNLR---LANLVVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMSAQS  323 (542)
Q Consensus       251 ~~i~-L~~lL~~~-~-~~v~~~a~~~L~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~  323 (542)
                      ++++ |+.++.+. + +.++..++++|++|+...++   ....+.+.++++.|+.+|.+++ +.++..++++|+|++.++
T Consensus       305 g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~  384 (644)
T 2z6h_A          305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  384 (644)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred             CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence            9999 99999874 3 79999999999999976442   3344677899999999999876 589999999999999876


Q ss_pred             hHHHHHHHhhCchHHHHHhhcCC---------------------ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q psy12594        324 EQIAEQIIELQGVGSLQTILQCP---------------------HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTL  382 (542)
Q Consensus       324 ~~~~~~~~~~~~l~~L~~ll~~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L  382 (542)
                      ... ..+++.++++.|+.++.+.                     ..+.++..++.+|.+++ .++..+..+.+.|+++.|
T Consensus       385 ~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~L  462 (644)
T 2z6h_A          385 ANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLF  462 (644)
T ss_dssp             GGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHH
T ss_pred             HHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHh-cCHHHHHHHHhCCcHHHH
Confidence            554 7888999999999998762                     23467778888888885 455777888899999999


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHh---------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHh
Q psy12594        383 LSKITQTCVSDNLKSKCKNALNILIP---------KCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTS  453 (542)
Q Consensus       383 ~~ll~~~~~~~~v~~~a~~aL~nl~~---------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~  453 (542)
                      +.++.++  ++++++.|+++|.++..         +++.++.|..++. +.+++++..+.++|.++....+...+...  
T Consensus       463 v~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~--  537 (644)
T 2z6h_A          463 VQLLYSP--IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVLFRMSEDKPQDYKKRL--  537 (644)
T ss_dssp             HHHTTCS--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTTSCHHHHHHH--
T ss_pred             HHHHcCC--CHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHc-CCCHHHHHHHHHHHHHHhccCcHhhhccc--
Confidence            9999976  57899999999999853         4688999999999 99999999999999999776643222211  


Q ss_pred             cchHHhhhcC
Q psy12594        454 HCLRKVQEIE  463 (542)
Q Consensus       454 g~~~~l~~l~  463 (542)
                       +++.+..+.
T Consensus       538 -~~~il~~~~  546 (644)
T 2z6h_A          538 -SVELTSSLF  546 (644)
T ss_dssp             -HHHHHHHHS
T ss_pred             -chHHHHHHH
Confidence             255555554

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.1e-37  Score=308.30  Aligned_cols=360  Identities=14%  Similarity=0.114  Sum_probs=297.7

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC------------CHHHHHHHHHHH
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ------------NKHYKKTALHML  108 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~------------~~~~~~~a~~~L  108 (542)
                      ..++.|+..+.+.|+.   ...+.|..+.  ..++.+..+++.|.+|.|+++|...            +++++..|+++|
T Consensus        32 ~~~~~l~~~~~~~~~~---~~~~~ll~~~--~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al  106 (458)
T 3nmz_A           32 EMVYSLLSMLGTHDKD---DMSRTLLAMS--SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL  106 (458)
T ss_dssp             -------------CCH---HHHHHHHHHH--SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHH---HHHHHHHHHH--cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence            3467777777777776   3667788888  7788889999999999999999863            279999999999


Q ss_pred             HHHhcCChhhhh-HhhcCCh----------HHHHhhhcCCC--HH-----HHH-------HHHHHHHHhhcCChHHHHHH
Q psy12594        109 TCVAQQDERCAG-LIEDKDL----------DSIISSLHDFD--PD-----TRA-------NAALALGGLAKDNKHFAERI  163 (542)
Q Consensus       109 ~~l~~~~~~~~~-~~~~g~v----------~~Lv~lL~~~~--~~-----~~~-------~a~~~L~~l~~~~~~~~~~i  163 (542)
                      .|++.+.++... ..+.+++          +.+++++.+..  .+     +++       .|+|+|.|++. ++++|+.+
T Consensus       107 ~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i  185 (458)
T 3nmz_A          107 HNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAM  185 (458)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHH
T ss_pred             HHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            999988877777 6777777          66777776542  22     444       89999999977 58899999


Q ss_pred             HHcCChHHHHHhccC-----------CCHhHHHHHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHhhcCCCHHHHHHHHH
Q psy12594        164 VQCGALPPLVQILAS-----------PQLSLKHAAAFALDGIVKHSPELAESASD-CDVIPLLIKALNNDEVNVKADAFL  231 (542)
Q Consensus       164 ~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~  231 (542)
                      ++.|+++.|+.+|..           .++.+++.|+|+|.||+.+++..+..+.. .|++|.|+.+|.++++++++.++|
T Consensus       186 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~  265 (458)
T 3nmz_A          186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS  265 (458)
T ss_dssp             HHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999952           23779999999999999987767766654 455999999999999999999999


Q ss_pred             HHHHHhcC-ChhhHHHHHhhchHH-HHHhh-cCCChhHHHHHHHHHHHHhcCChHHHHHHH-hcCCHHHHHHhhhcCCcc
Q psy12594        232 CLADIAKD-SPSLASTIADGATTL-AVEHL-TYPHGLVQKNAATLLRDMCKHNLRLANLVV-LAGGLDGLLRLIDCNGGY  307 (542)
Q Consensus       232 ~L~~l~~~-~~~~~~~~~~~~~i~-L~~lL-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~  307 (542)
                      +|+||+.. ++..+..+.+.|+++ |+.+| .+.++.+++.++.+|+||+.+.++....+. ..|+++.|+.+|.+.++.
T Consensus       266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~  345 (458)
T 3nmz_A          266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT  345 (458)
T ss_dssp             HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred             HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCc
Confidence            99999985 556888899999999 99975 456899999999999999986655555565 789999999999987654


Q ss_pred             ----chHHHHHHHhHhhc---CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594        308 ----NSLPAIMALGYMSA---QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLS  380 (542)
Q Consensus       308 ----~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~  380 (542)
                          ++..|+++|.||+.   .+++..+.+.+.|+++.|+.+|.+++ ..+++.|+|+|+|++.+++++++.+.+.|+++
T Consensus       346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~  424 (458)
T 3nmz_A          346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVS  424 (458)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHH
T ss_pred             chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence                89999999999997   78888999999999999999999865 58999999999999888999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        381 TLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       381 ~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      .|+++|.++  ++.+++.|+|+|.||...
T Consensus       425 ~Lv~LL~s~--~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          425 MLKNLIHSK--HKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHTTTTCS--SHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCC--CHHHHHHHHHHHHHHHcC
Confidence            999999876  579999999999999854

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6.2e-37  Score=311.62  Aligned_cols=360  Identities=12%  Similarity=0.124  Sum_probs=308.7

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      .+|.|+.+|+++++.+|..|+.+|.+++  .+ +..+..+.+.|++|.|+++|+++++.++..|+++|.+++.++++.+.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~--~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHT--SSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHH--cCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999999  65 66777899999999999999999999999999999999998778888


Q ss_pred             -HhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc--------cCC--------CHh
Q psy12594        121 -LIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL--------ASP--------QLS  182 (542)
Q Consensus       121 -~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll--------~~~--------~~~  182 (542)
                       +++.|++|.|+++|. ++++++++.++|+|++++.. +..+..+++ |++|.|++++        +++        ++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence             889999999999999 88899999999999999986 677888999 9999999999        332        456


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHhhhC-CChHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC---------------
Q psy12594        183 LKHAAAFALDGIVKHSPELAESASDC-DVIPLLIKALNN------DEVNVKADAFLCLADIAKDS---------------  240 (542)
Q Consensus       183 ~~~~a~~~L~nl~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~---------------  240 (542)
                      +++.|+|+|.||+.+ ++.+..+.+. |+++.|+.++.+      .+.++++.++++|.+++...               
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            777999999999996 8899999987 999999999985      45678899999999997310               


Q ss_pred             -----------------------------------hhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChH
Q psy12594        241 -----------------------------------PSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       241 -----------------------------------~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~  283 (542)
                                                         +...+.+...++++ |+.+|.++ ++.+++.++|+|.|++.+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               11223455677889 99999876 799999999999999976532


Q ss_pred             ----HHHHHH-hcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-----hhHHH
Q psy12594        284 ----LANLVV-LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-----EQLQV  353 (542)
Q Consensus       284 ----~~~~~~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----~~v~~  353 (542)
                          ..+.++ +.+++|.|+++|.+++..++..|+++|.|++.+. .. ..++..++++.|+++|..+..     +++..
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-~~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-HH-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence                213333 6899999999999999999999999999998753 33 345566899999999998532     46888


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       354 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      .++++|+|+..+++++.+.+.+.|+++.|++++.++ ++++++++|+|.|.|+..+
T Consensus       396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999987 2579999999999998754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.2e-35  Score=319.07  Aligned_cols=436  Identities=14%  Similarity=0.148  Sum_probs=372.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHh
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKD   92 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~   92 (542)
                      ...|..++.+|.+++.+++++..+.+.|+++.|+.+|++.++.++..|+.+|.+|+  .. +..+..+.+.|+++.|+.+
T Consensus       207 ~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa--~~~~~~~~~v~~~g~v~~Lv~l  284 (780)
T 2z6g_A          207 VETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL--LHQEGAKMAVRLAGGLQKMVAL  284 (780)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--HHSTTHHHHHHHTTHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh--CCChhhHHHHHHcCCHHHHHHH
Confidence            45788999999999999889999999999999999999999999999999999999  55 6777788889999999999


Q ss_pred             hccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594         93 LTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALP  170 (542)
Q Consensus        93 L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  170 (542)
                      |.+.+..++..++.+|.+++..+++.+. +.+.|+++.|+.++++.+ ...+..++.+|.+++. .+..+..+++.|+++
T Consensus       285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~  363 (780)
T 2z6g_A          285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ  363 (780)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHH
Confidence            9999999999999999999987777777 888899999999999876 4566778899999996 566789999999999


Q ss_pred             HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy12594        171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADG  250 (542)
Q Consensus       171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  250 (542)
                      .|+.++.+.+..+++.++++|.+|+...+..   ....++++.|+.++.+.+++++..++++|++|+...+..+..+.+.
T Consensus       364 ~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~  440 (780)
T 2z6g_A          364 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV  440 (780)
T ss_dssp             HHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence            9999999999999999999999999855321   1124578999999999999999999999999999887788888899


Q ss_pred             chHH-HHHhhcCC-C-hhHHHHHHHHHHHHhcCChH---HHHHHHhcCCHHHHHHhhhcCCc-cchHHHHHHHhHhhcCC
Q psy12594        251 ATTL-AVEHLTYP-H-GLVQKNAATLLRDMCKHNLR---LANLVVLAGGLDGLLRLIDCNGG-YNSLPAIMALGYMSAQS  323 (542)
Q Consensus       251 ~~i~-L~~lL~~~-~-~~v~~~a~~~L~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~  323 (542)
                      ++++ |+.+|.+. + +.++..++++|++|+...++   ....+...++++.|+.+|.+++. .++..++++|+|++.++
T Consensus       441 g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~  520 (780)
T 2z6g_A          441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  520 (780)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred             CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence            9999 99999874 3 59999999999999876544   23457788999999999999876 89999999999999865


Q ss_pred             hHHHHHHHhhCchHHHHHhhcCCC---------------------hhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q psy12594        324 EQIAEQIIELQGVGSLQTILQCPH---------------------KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTL  382 (542)
Q Consensus       324 ~~~~~~~~~~~~l~~L~~ll~~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L  382 (542)
                      .. ...+.+.++++.|+.++.++.                     .+.++..++.+|++++ .++..+..+.+.|+++.|
T Consensus       521 ~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~L  598 (780)
T 2z6g_A          521 AN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLF  598 (780)
T ss_dssp             HH-HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHH
T ss_pred             HH-HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHH
Confidence            44 477888999999999986521                     2457778899999996 467777888899999999


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHH---------hhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHh
Q psy12594        383 LSKITQTCVSDNLKSKCKNALNILI---------PKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTS  453 (542)
Q Consensus       383 ~~ll~~~~~~~~v~~~a~~aL~nl~---------~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~  453 (542)
                      +.++.++  +++++..|+.+|+++.         .+.+.++.|+.++. +.+++++..++++|.++....+...+.   .
T Consensus       599 v~lL~~~--~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~-~~~~~Vr~~A~~aL~~l~~~~~~~~~~---~  672 (780)
T 2z6g_A          599 VQLLYSP--IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVLFRMSEDKPQDYKK---R  672 (780)
T ss_dssp             HHGGGCS--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTSCTTHHH---H
T ss_pred             HHHHcCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCChHhhhc---c
Confidence            9999987  5799999999999985         34688999999999 999999999999999998866532221   1


Q ss_pred             cchHHhhhcC
Q psy12594        454 HCLRKVQEIE  463 (542)
Q Consensus       454 g~~~~l~~l~  463 (542)
                      .+++.+..+.
T Consensus       673 l~~~ll~~l~  682 (780)
T 2z6g_A          673 LSVELTSSLF  682 (780)
T ss_dssp             HHHHHHHHC-
T ss_pred             ccHHHHHHHH
Confidence            2666667665

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=9.7e-35  Score=296.89  Aligned_cols=388  Identities=15%  Similarity=0.149  Sum_probs=336.3

Q ss_pred             HHHHHHHHHHHHhcC--CCCchHHHHhC-CchHHHHhhhcCC-ChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHH
Q psy12594         15 RARLCFVQTMSAFAD--KPSTIHFLKDL-NVVDLIVPLLADK-VPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALV   89 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~--~~~~~~~l~~~-g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~L   89 (542)
                      ..|..++..|..+..  .......+.+. |++|.|+.+|+++ ++.+|..|+.+|.+++  .. ++....+.+.|+++.|
T Consensus        35 ~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~~i~~L  112 (450)
T 2jdq_A           35 EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIA--SGNSLQTRIVIQAGAVPIF  112 (450)
T ss_dssp             HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH--SSCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHh--cCCHHHHHHHHhCCCHHHH
Confidence            457788888888643  22333556666 9999999999988 8999999999999999  65 6677778889999999


Q ss_pred             HHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCC-hHHHHHHHHc
Q psy12594         90 LKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDN-KHFAERIVQC  166 (542)
Q Consensus        90 v~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~  166 (542)
                      +++|+++++.++..|+++|++++...+..+. +.+.|+++.|+.++.+ .++.++..++++|++++... +.....++ .
T Consensus       113 ~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~  191 (450)
T 2jdq_A          113 IELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-S  191 (450)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-G
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-H
Confidence            9999999999999999999999998877777 8889999999999996 68999999999999999654 33222233 6


Q ss_pred             CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy12594        167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST  246 (542)
Q Consensus       167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  246 (542)
                      ++++.|+++++++++.++..++|+|.+++.+.++....+.+.++++.|+.++.+++++++..++++|++++...+.....
T Consensus       192 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  271 (450)
T 2jdq_A          192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV  271 (450)
T ss_dssp             GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHH
Confidence            88999999999999999999999999999987888888888999999999999999999999999999999988777777


Q ss_pred             HHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC-Ch
Q psy12594        247 IADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ-SE  324 (542)
Q Consensus       247 ~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~  324 (542)
                      +.+.++++ |+.++.++++.++..++++|.+++.+.+...+.+.+.++++.|+.++.++++.++..|+++|++++.+ ++
T Consensus       272 ~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~  351 (450)
T 2jdq_A          272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSA  351 (450)
T ss_dssp             HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence            88889999 99999999999999999999999988888887788889999999999999999999999999999975 67


Q ss_pred             HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH-----------HHHHHHHcCChHHHHHHHhcCCCCh
Q psy12594        325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD-----------NVTALCEENVLSTLLSKITQTCVSD  393 (542)
Q Consensus       325 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-----------~~~~l~~~~~l~~L~~ll~~~~~~~  393 (542)
                      +..+.+++.++++.|+.++... +..++..++++|.+++...+.           ....+.+.|+++.|..++.++  +.
T Consensus       352 ~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~  428 (450)
T 2jdq_A          352 EQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE--NQ  428 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH--HH
T ss_pred             HHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC--CH
Confidence            7777888899999999999985 568999999999999764432           245566778888888887766  45


Q ss_pred             HHHHHHHHHHHHHHh
Q psy12594        394 NLKSKCKNALNILIP  408 (542)
Q Consensus       394 ~v~~~a~~aL~nl~~  408 (542)
                      ++++.|..+|.++..
T Consensus       429 ~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          429 EIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCC
Confidence            888888888888763

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=5.5e-36  Score=305.53  Aligned_cols=375  Identities=17%  Similarity=0.168  Sum_probs=308.5

Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CH
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH-SP  199 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~  199 (542)
                      -...+.++.|+++|.++++.++..|+++|.+++..++..+..+.+.|+||.|+++|+++++.+++.|+|+|.||+.+ ++
T Consensus        44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred             CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence            34568999999999999999999999999999998999999999999999999999999999999999999999985 68


Q ss_pred             HHHHHhhhCCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-----------------
Q psy12594        200 ELAESASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-----------------  260 (542)
Q Consensus       200 ~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-----------------  260 (542)
                      +++..+++.|+|+.|+.+|.+ .+.++++.++++|++|+.+. +.+..+.. ++++ |+.++.                 
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~  201 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR  201 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence            999999999999999999996 58899999999999999864 57777775 5688 998771                 


Q ss_pred             -CCChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhc------CCccchHHHHHHHhHhhcCCh--------
Q psy12594        261 -YPHGLVQKNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDC------NGGYNSLPAIMALGYMSAQSE--------  324 (542)
Q Consensus       261 -~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~--------  324 (542)
                       ..++.++++++++|+||+...++..+.+++. |+++.|+.++++      .+...+.+|+++|.||+....        
T Consensus       202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence             2268999999999999999888877777775 556799999985      355688999999999986521        


Q ss_pred             -----------------HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH---H-HHHHHHcCChHHHH
Q psy12594        325 -----------------QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD---N-VTALCEENVLSTLL  383 (542)
Q Consensus       325 -----------------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~---~-~~~l~~~~~l~~L~  383 (542)
                                       .....+++.++++.|+.++..+..+.+++.|+++|.||+.+...   . ...+.+.++++.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                             11223345567788999997655679999999999999987622   2 23444578999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHhh--------CCCchhhHHhhcCCC--------CHHHHHHHHHHHHhhCCCChhhh
Q psy12594        384 SKITQTCVSDNLKSKCKNALNILIPK--------CENPKELEQMLLGNV--------SEELLASILCAFAKILPCDPVAR  447 (542)
Q Consensus       384 ~ll~~~~~~~~v~~~a~~aL~nl~~~--------~~~i~~L~~lL~~~~--------~~~v~~~~l~~l~~ll~~~~~~~  447 (542)
                      .+|.++  ++.+++.|+|+|+||...        .+.++.|+++|. ..        ..+++..++++|.|++..++.++
T Consensus       362 ~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~-~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~  438 (584)
T 3l6x_A          362 DLLTNE--HERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLP-GGQQNSSWNFSEDTVISILNTINEVIAENLEAA  438 (584)
T ss_dssp             HGGGCS--CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCC--CHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhc-CCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence            999987  579999999999999643        245899999998 54        35789999999999999999999


Q ss_pred             hHHHHhcchHHhhhcC-C---CCcHH-HHHHHHhccCccchhcccCccchHHHHHHHhhcC
Q psy12594        448 RSFVTSHCLRKVQEIE-P---TPEIA-PHLKTINACFPNEVIHFVSPHYLEDLINRLDQFN  503 (542)
Q Consensus       448 ~~~~~~g~~~~l~~l~-~---~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  503 (542)
                      +.+.+.|++++|..+. .   ...++ .|..+|.++|.+...+   ..|.++-+++-+++.
T Consensus       439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr---~~~kk~G~~~~~f~~  496 (584)
T 3l6x_A          439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR---KPLEKEGWKKSDFQV  496 (584)
T ss_dssp             HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHH---HHHHTTTCCGGGGCC
T ss_pred             HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHH---HHHHHcCCCHHHhcc
Confidence            9999999999999997 3   22344 4888998888755544   234445555666653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=296.95  Aligned_cols=347  Identities=15%  Similarity=0.161  Sum_probs=294.3

Q ss_pred             HHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCC------------hHHHHHHHHHHHHhHccCChHHHHHHHhcCcH
Q psy12594         19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKV------------PSIQHAALATLGKLMCAKHVDIRQEVLERNLV   86 (542)
Q Consensus        19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~------------~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l   86 (542)
                      ...+.|..++.++..|..+++.|++|.|+.+|+..+            ++++..|+.+|.+|++.. ++......+.+.+
T Consensus        48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~  126 (458)
T 3nmz_A           48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVL  126 (458)
T ss_dssp             HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHH
Confidence            467889999999999999999999999999998643            699999999999999544 3333443444444


Q ss_pred             ----------HHHHHhhccCC--HH-----HHH-------HHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcC-----
Q psy12594         87 ----------ALVLKDLTKQN--KH-----YKK-------TALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHD-----  136 (542)
Q Consensus        87 ----------~~Lv~~L~~~~--~~-----~~~-------~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~-----  136 (542)
                                +.+++++.+.+  .+     ++.       .|+++|.+++.+ ++.+. +++.|+++.|+.+|..     
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~  205 (458)
T 3nmz_A          127 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMY  205 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhccc
Confidence                      55666666532  11     333       899999999765 67777 9999999999999952     


Q ss_pred             ------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CHHHHHHhhhC
Q psy12594        137 ------FDPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILASPQLSLKHAAAFALDGIVKH-SPELAESASDC  208 (542)
Q Consensus       137 ------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~  208 (542)
                            .++.++..|+|+|.|++..++..+..+... |++|.|+++|+++++++++.|+|+|.||+.. +++.+..+.+.
T Consensus       206 ~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~  285 (458)
T 3nmz_A          206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV  285 (458)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT
T ss_pred             ccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc
Confidence                  237789999999999999887777777654 6699999999999999999999999999985 67888999999


Q ss_pred             CChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hhchHH-HHHhhcCCCh----hHHHHHHHHHHHHhc--
Q psy12594        209 DVIPLLIKAL-NNDEVNVKADAFLCLADIAKDSPSLASTIA-DGATTL-AVEHLTYPHG----LVQKNAATLLRDMCK--  279 (542)
Q Consensus       209 ~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~-L~~lL~~~~~----~v~~~a~~~L~~L~~--  279 (542)
                      |+++.|+++| .+.++++++.++.+|+||+.+..+.+..+. ..|+++ |+.+|.+.++    +++..++|+|+||+.  
T Consensus       286 GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~  365 (458)
T 3nmz_A          286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI  365 (458)
T ss_dssp             THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence            9999999975 556899999999999999985555666666 789999 9999998754    499999999999997  


Q ss_pred             -CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHH
Q psy12594        280 -HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT  358 (542)
Q Consensus       280 -~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  358 (542)
                       ..++..+.+.+.|+++.|+.+|++++..++..|+++|+|++.++++....+++.|+++.|+.++.++ +..+++.|+++
T Consensus       366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~A  444 (458)
T 3nmz_A          366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAA  444 (458)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHH
Confidence             6788888899999999999999999999999999999999988899999999999999999999885 46899999999


Q ss_pred             HHHhhcCChH
Q psy12594        359 LGQIGKHSVD  368 (542)
Q Consensus       359 L~~l~~~~~~  368 (542)
                      |.||+.++|.
T Consensus       445 L~nL~~~~p~  454 (458)
T 3nmz_A          445 LRNLMANRPA  454 (458)
T ss_dssp             HHHHHTCCSC
T ss_pred             HHHHHcCCHh
Confidence            9999988764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.98  E-value=2.5e-30  Score=251.11  Aligned_cols=267  Identities=15%  Similarity=0.124  Sum_probs=235.4

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-----------CCHhHHHHHHHHHHHHhcCCHHHHHHhhh
Q psy12594        139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-----------PQLSLKHAAAFALDGIVKHSPELAESASD  207 (542)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~  207 (542)
                      ......|+|+|.+++.+ +++|+.+++.|+++.|+.+|..           .++.+++.|+|+|.||+.++++.+..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34556899999999985 7899999999999999999952           23789999999999999987777777754


Q ss_pred             C-CChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhhchHH-HHHhh-cCCChhHHHHHHHHHHHHhcCChH
Q psy12594        208 C-DVIPLLIKALNNDEVNVKADAFLCLADIAKD-SPSLASTIADGATTL-AVEHL-TYPHGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       208 ~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~-L~~lL-~~~~~~v~~~a~~~L~~L~~~~~~  283 (542)
                      . |++|.|+.+|.++++++++.++|+|.||+.. +++.+..+.+.|+++ |+.+| .+.++.+++.++++|++|+.+.++
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence            4 5599999999999999999999999999985 556888899999999 99975 566899999999999999987766


Q ss_pred             HHHHHH-hcCCHHHHHHhhhcCCcc----chHHHHHHHhHhhc---CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594        284 LANLVV-LAGGLDGLLRLIDCNGGY----NSLPAIMALGYMSA---QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA  355 (542)
Q Consensus       284 ~~~~~~-~~~~i~~Lv~lL~~~~~~----~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  355 (542)
                      ....+. ..|+++.|+.+|.++++.    ++..|+++|.|++.   .+++..+.+.+.|+++.|+.+|.+++ ..+++.|
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A  283 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNA  283 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHH
Confidence            655566 789999999999987653    88999999999997   68888999999999999999999865 5899999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       356 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      +|+|+|++.+++++++.+.+.|+++.|++++.++  ++.+|+.|+|+|.||...
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC
Confidence            9999999888999999999999999999999987  579999999999999854

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.6e-30  Score=250.03  Aligned_cols=270  Identities=15%  Similarity=0.102  Sum_probs=242.1

Q ss_pred             hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-----------CCHHHHHHHHHHHHHHhcCChhhhh-Hh
Q psy12594         55 PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-----------QNKHYKKTALHMLTCVAQQDERCAG-LI  122 (542)
Q Consensus        55 ~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~-~~  122 (542)
                      ...+..|+.+|.+++  .+++++..+.+.|+++.|+.+|..           .++.++..|+++|.+++..++..+. +.
T Consensus        46 ~~~~~~A~~aL~nls--~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLS--FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345558999999999  899999999999999999999952           2478999999999999988877777 54


Q ss_pred             h-cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCH
Q psy12594        123 E-DKDLDSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSP  199 (542)
Q Consensus       123 ~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~  199 (542)
                      . .|++|.|+++|.++++++++.|+++|.+++.. ++.++..+.+.|++|.|+++| ++.++++++.|+++|.||+.+.+
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            4 46699999999999999999999999999974 678899999999999999974 66788999999999999999777


Q ss_pred             HHHHHhh-hCCChHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhhHHHHHhhchHH-HHHhhcCCChhHHHHH
Q psy12594        200 ELAESAS-DCDVIPLLIKALNNDEV----NVKADAFLCLADIAK---DSPSLASTIADGATTL-AVEHLTYPHGLVQKNA  270 (542)
Q Consensus       200 ~~~~~~~-~~~~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a  270 (542)
                      +.+..+. ..|+++.|+.++.+.++    ++++.++|+|+||+.   ..++.+..+.+.|+++ |+.+|.+++..+++.|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            7777777 79999999999987654    599999999999997   5667888999999999 9999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHH
Q psy12594        271 ATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQI  326 (542)
Q Consensus       271 ~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~  326 (542)
                      +++|+||+..+++..+.+.+.|+++.|+.+++++++.++..|+++|.||+.+.+..
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999888888888999999999999999999999999999999999887664

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=2.4e-27  Score=222.18  Aligned_cols=242  Identities=25%  Similarity=0.317  Sum_probs=228.9

Q ss_pred             CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594        125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES  204 (542)
Q Consensus       125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~  204 (542)
                      |.++.|+++|++++++++..|+++|.+++...+..+..+.+.|+++.|+++++++++.++..++++|.+++.++++.+..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            57899999999999999999999999999988888999999999999999999999999999999999999987999999


Q ss_pred             hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594        205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~  283 (542)
                      +.+.|+++.|+.++.+++++++..++++|++++...++.+..+.+.++++ |+.++.++++.++..++++|++++.+.+.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999987778888999999999 99999999999999999999999998888


Q ss_pred             HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594        284 LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIG  363 (542)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  363 (542)
                      ..+.+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+++|+|++
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~  240 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIK  240 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence            888888999999999999999999999999999999998899999999999999999999985 4699999999999998


Q ss_pred             cCCh
Q psy12594        364 KHSV  367 (542)
Q Consensus       364 ~~~~  367 (542)
                      ...+
T Consensus       241 ~~~~  244 (252)
T 4hxt_A          241 SGGW  244 (252)
T ss_dssp             HTCB
T ss_pred             cCCC
Confidence            6654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=3.4e-27  Score=221.08  Aligned_cols=241  Identities=24%  Similarity=0.283  Sum_probs=228.1

Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594         84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER  162 (542)
Q Consensus        84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (542)
                      +.++.|+++|.++++.++..++++|.+++...++... +++.|+++.|+++|+++++.++..++++|.+++..++..+..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            5789999999999999999999999999988876666 899999999999999999999999999999999988999999


Q ss_pred             HHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594        163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS  242 (542)
Q Consensus       163 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  242 (542)
                      +.+.|+++.|+.+++++++.++..|+++|.+++..+++.+..+.+.|+++.|++++.+++++++..++++|++++...+.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999987899999999999999999999999999999999999999998877


Q ss_pred             hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      ....+.+.++++ |+.++.++++.++..++++|.+++.+.+...+.+.+.|+++.|+.++.++++.++..|+++|+|++.
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence            778888899999 9999999999999999999999999888888889999999999999999999999999999999987


Q ss_pred             CCh
Q psy12594        322 QSE  324 (542)
Q Consensus       322 ~~~  324 (542)
                      ..+
T Consensus       242 ~~~  244 (252)
T 4hxt_A          242 GGW  244 (252)
T ss_dssp             TCB
T ss_pred             CCC
Confidence            644

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=6.6e-27  Score=219.24  Aligned_cols=239  Identities=21%  Similarity=0.310  Sum_probs=222.8

Q ss_pred             CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594        125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES  204 (542)
Q Consensus       125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~  204 (542)
                      ...+.++.+|++++++++..|+++|.++....+..++.+++.|+++.|+++++++++.++..|+++|++++.++++.+..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            56899999999999999999999998877657778889999999999999999999999999999999999988999999


Q ss_pred             hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594        205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~  283 (542)
                      +++.|+++.|+.++.+++++++..++|+|++++...+.....+.+.++++ |+.+|.++++.++..++++|.+++.+.+.
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            99999999999999999999999999999999998864447888899999 99999999999999999999999998888


Q ss_pred             HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594        284 LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIG  363 (542)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  363 (542)
                      ....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+++|+|++
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence            888888999999999999999999999999999999999999999999999999999999985 4599999999999996


Q ss_pred             c
Q psy12594        364 K  364 (542)
Q Consensus       364 ~  364 (542)
                      .
T Consensus       251 ~  251 (252)
T 4db8_A          251 S  251 (252)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.7e-26  Score=216.47  Aligned_cols=239  Identities=19%  Similarity=0.268  Sum_probs=221.4

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ....+.+.++|+++++.++..|+.+|.++.+. .++.+..+.+.|+++.|+++|+++++.++..++++|.+++.++++.+
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            34578899999999999999999999887732 57778889999999999999999999999999999999999887877


Q ss_pred             h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                      . +.+.|+++.|+.+|+++++.++..|+++|.+++...+.....+.+.|+++.|+++++++++.++..++++|+|++.++
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            7 899999999999999999999999999999999877665588999999999999999999999999999999999988


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                      ++....+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.++++ |+.++.+++++++..|+++|.+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999988877888889999999 99999999999999999999999


Q ss_pred             hc
Q psy12594        278 CK  279 (542)
Q Consensus       278 ~~  279 (542)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            85

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.4e-25  Score=229.95  Aligned_cols=391  Identities=11%  Similarity=0.081  Sum_probs=307.6

Q ss_pred             HHHhCCchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy12594         36 FLKDLNVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ  114 (542)
Q Consensus        36 ~l~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~  114 (542)
                      .|...|..+.+.+.+.+ .+..+...++..|...+  .++.+|..+ ...+++.|.+.+++  ..++..|+-+|+.+...
T Consensus       250 lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaAC--i~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~  324 (778)
T 3opb_A          250 IFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSAC--IDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSF  324 (778)
T ss_dssp             HHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHC--CSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGG
T ss_pred             HHccccHHHHHHHHHhcccchHHHHHHHHHHHHHh--CCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcC
Confidence            44568889999988855 45667777778888888  777776666 56778999988865  57899999999998765


Q ss_pred             Chhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccC-CCHhHHHHHHHHH
Q psy12594        115 DERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILAS-PQLSLKHAAAFAL  191 (542)
Q Consensus       115 ~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L  191 (542)
                      ...... +.  ...+.++++|.+++.+.+..|++.|+.++. .+..++.+.+. |+++.|+++++. .+..+...++.+|
T Consensus       325 ~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL  401 (778)
T 3opb_A          325 TKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM  401 (778)
T ss_dssp             GTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHH
T ss_pred             CCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            432222 22  267888899988876779999999999987 55667777766 669999999995 6788999999999


Q ss_pred             HHHhcCCH-------------------------------------H-HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHH
Q psy12594        192 DGIVKHSP-------------------------------------E-LAESASDCDVIPLLIKALNNDEVNVKADAFLCL  233 (542)
Q Consensus       192 ~nl~~~~~-------------------------------------~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  233 (542)
                      .|++...+                                     + .+..+.+.|++|.|+.++.+.++.+++.++|+|
T Consensus       402 ~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL  481 (778)
T 3opb_A          402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRII  481 (778)
T ss_dssp             HHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred             HHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            99987332                                     1 345677899999999999999999999999999


Q ss_pred             HHHhcCChhhHHHHHhhchHH-HHHhhcCCChh---HHHHHHHHHHHHhcCC-hHHHHHHHh---cCCHHHHHHhhhc-C
Q psy12594        234 ADIAKDSPSLASTIADGATTL-AVEHLTYPHGL---VQKNAATLLRDMCKHN-LRLANLVVL---AGGLDGLLRLIDC-N  304 (542)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~---v~~~a~~~L~~L~~~~-~~~~~~~~~---~~~i~~Lv~lL~~-~  304 (542)
                      .+|+.+ ++.+..+++.|+++ |+.+|.+....   .+..|+.+|.++.... |...  +-.   .+++++|+.+|.. +
T Consensus       482 ~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~--f~~~~~~~aI~pLv~LL~~~~  558 (778)
T 3opb_A          482 YNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI--FKKYSALNAIPFLFELLPRST  558 (778)
T ss_dssp             HHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH--SSSSCSTTHHHHHHHTSCCSS
T ss_pred             HHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH--cCCCccccchHHHHHHcCCCC
Confidence            999977 57999999999999 99999988543   8999999999998544 4432  111   3889999999983 2


Q ss_pred             Ccc-------------chHHHHHHHhHhhcCC----hHHHHHHHhh-CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594        305 GGY-------------NSLPAIMALGYMSAQS----EQIAEQIIEL-QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS  366 (542)
Q Consensus       305 ~~~-------------~~~~a~~~L~~l~~~~----~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  366 (542)
                      ...             .+..|+.+|.||+..+    ++.+..+++. |+++.|..++.+++ ..+|.+|+++++|++. +
T Consensus       559 ~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n-~~VrrAA~elI~NL~~-~  636 (778)
T 3opb_A          559 PVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN-VPLQRSTLELISNMMS-H  636 (778)
T ss_dssp             SCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHT-S
T ss_pred             CcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCC-HHHHHHHHHHHHHHhC-C
Confidence            211             1679999999999976    3446667774 99999999999854 5899999999999976 4


Q ss_pred             hHHH-HHHHHc------CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-----------CCCchhhHHhhcCC--CCH
Q psy12594        367 VDNV-TALCEE------NVLSTLLSKITQTCVSDNLKSKCKNALNILIPK-----------CENPKELEQMLLGN--VSE  426 (542)
Q Consensus       367 ~~~~-~~l~~~------~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~-----------~~~i~~L~~lL~~~--~~~  426 (542)
                      ++.+ +.+.+.      +.++.|+.++..+  ++++|+.|+|||+|+...           .+.++.++.+|+ +  .++
T Consensus       637 ~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~-~~~~~~  713 (778)
T 3opb_A          637 PLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFA-DQIDDI  713 (778)
T ss_dssp             GGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHH-HTTTCH
T ss_pred             cHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHh-ccCCCH
Confidence            4443 344322      2378999999876  679999999999999421           145778899998 6  899


Q ss_pred             HHHHHHHHHHHhhCCC
Q psy12594        427 ELLASILCAFAKILPC  442 (542)
Q Consensus       427 ~v~~~~l~~l~~ll~~  442 (542)
                      +++..++..+.|+...
T Consensus       714 ~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          714 ELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999863

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.4e-25  Score=228.75  Aligned_cols=382  Identities=10%  Similarity=0.051  Sum_probs=300.3

Q ss_pred             HHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC
Q psy12594         18 LCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN   97 (542)
Q Consensus        18 ~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~   97 (542)
                      ..+++.+...|-++.+|+.+ ..++++.|..++++  ..+|..|+.+|.++.+..... ...+  ....+.+.+.|.+++
T Consensus       274 ~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~-~~si--~~La~~~~~~L~~~~  347 (778)
T 3opb_A          274 KELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLT-CINL--KQLSEIFINAISRRI  347 (778)
T ss_dssp             HHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT-TCCH--HHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC-cCcH--HHHHHHHHHHHhcCC
Confidence            56778888888888887777 56778999999976  588999999999988332211 0111  125567777787777


Q ss_pred             HHHHHHHHHHHHHHhcCChhhhhH-hhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCCh------------------
Q psy12594         98 KHYKKTALHMLTCVAQQDERCAGL-IEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNK------------------  157 (542)
Q Consensus        98 ~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~------------------  157 (542)
                      .+.+..|+..|..++...+....+ .+.|+++.|+.++++ .+..+...++.+|.|++...+                  
T Consensus       348 ~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~  427 (778)
T 3opb_A          348 VPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX  427 (778)
T ss_dssp             HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------
T ss_pred             ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc
Confidence            677999999999998766444344 455779999999995 677888999999999985322                  


Q ss_pred             -------------------H-HHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh
Q psy12594        158 -------------------H-FAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA  217 (542)
Q Consensus       158 -------------------~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l  217 (542)
                                         + .++.+.+.|++|.|+.+++++++.+++.++|+|.||+. +++.+..+++.|+++.|+.+
T Consensus       428 ~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~l  506 (778)
T 3opb_A          428 XXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEY  506 (778)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHH
T ss_pred             cCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence                               1 45667788999999999999999999999999999997 68899999999999999999


Q ss_pred             hcCCCHH---HHHHHHHHHHHHhcCChhhHHHHHh---hchHH-HHHhhcC-CCh-------------hHHHHHHHHHHH
Q psy12594        218 LNNDEVN---VKADAFLCLADIAKDSPSLASTIAD---GATTL-AVEHLTY-PHG-------------LVQKNAATLLRD  276 (542)
Q Consensus       218 l~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~-L~~lL~~-~~~-------------~v~~~a~~~L~~  276 (542)
                      +.+....   .+..|+++|+++....... ..+..   .++++ |+.+|.. ++.             --+..|+.+|.|
T Consensus       507 L~s~~~~~~~~k~~AA~ALArLlis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN  585 (778)
T 3opb_A          507 LANKQDIGEPIRILGCRALTRMLIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN  585 (778)
T ss_dssp             TTCC---CCHHHHHHHHHHHHHHHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred             HhcCCCcchHHHHHHHHHHHHHHhcCCHH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence            9977544   8999999999999654211 11211   37889 9999983 221             127799999999


Q ss_pred             HhcCC----hHHHHHHHh-cCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh------CchHHHHHhhcC
Q psy12594        277 MCKHN----LRLANLVVL-AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL------QGVGSLQTILQC  345 (542)
Q Consensus       277 L~~~~----~~~~~~~~~-~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~~l~~L~~ll~~  345 (542)
                      |+..+    ++..+.+++ .|+++.|..++.+++..++.+|++++.||+.+.....+.+.+.      +.++.|+.++..
T Consensus       586 LAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s  665 (778)
T 3opb_A          586 LASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL  665 (778)
T ss_dssp             HHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC
T ss_pred             HhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC
Confidence            99876    234555677 4899999999999999999999999999997544322233221      247889999987


Q ss_pred             CChhhHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        346 PHKEQLQVAAAWTLGQIGKHSVDNVTALCEE-NVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       346 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                       .+..+|.+|+|+|+|++..++..++.+++. ++++.++.++.+...+++++..++.++.|+..
T Consensus       666 -~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          666 -SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             -CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence             456999999999999988888888999987 89999999999843368999999999999986

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1.3e-23  Score=191.02  Aligned_cols=200  Identities=22%  Similarity=0.302  Sum_probs=187.4

Q ss_pred             hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594        122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL  201 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~  201 (542)
                      ...+..+.|+.+|+++++.++..|+++|.+++..++..+..+.+.|+++.|+++|+++++.++..|+++|+|++.++++.
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            34578999999999999999999999999999889999999999999999999999999999999999999999888999


Q ss_pred             HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594        202 AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       202 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~  280 (542)
                      +..+++.|+++.|+.++.++++.++..++|+|++++...++....+.+.++++ |+.++.++++.++..++++|.+++.+
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999998877778888999999 99999999999999999999999998


Q ss_pred             ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        281 NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       281 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      .+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            88888888899999999999999999999999999999864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1.6e-23  Score=190.24  Aligned_cols=198  Identities=20%  Similarity=0.307  Sum_probs=186.3

Q ss_pred             hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12594         82 ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA  160 (542)
Q Consensus        82 ~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~  160 (542)
                      ..+..+.|+.+|.++++.++..|+++|.+++..+++... +.+.|+++.|+++|+++++.++..|+++|++++..++..+
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            467889999999999999999999999999988877777 9999999999999999999999999999999998899999


Q ss_pred             HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594        161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  240 (542)
                      ..+.+.|+++.|+.+|+++++.++..|+++|+|++.++++....+++.|+++.|++++.+++++++..++++|++++..+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999988888888999999999999999999999999999999999988


Q ss_pred             hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                      ++.+..+.+.|+++ |+.++.++++.+++.|+++|.+|+.
T Consensus       170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            88888899999999 9999999999999999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=1.1e-21  Score=185.30  Aligned_cols=224  Identities=14%  Similarity=0.067  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh
Q psy12594        139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ-ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA  217 (542)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l  217 (542)
                      .+-+..|+..|.+++. +.++...+.+.|++|.|+. +|+++++.++..|+|+|+|++.+++..+..+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678889999999987 4557888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHH
Q psy12594        218 LNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLD  295 (542)
Q Consensus       218 l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~  295 (542)
                      +++ ++..+++.|+|+|++++++.+.....+...++++ |+.+|++++..++..++|+|.+++.++++..+.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            995 5899999999999999998877777888889999 99999999999999999999999998888888899999999


Q ss_pred             HHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh--Cc---hHHHHHhhcCCC-hhhHHHHHHHHHHHhh
Q psy12594        296 GLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL--QG---VGSLQTILQCPH-KEQLQVAAAWTLGQIG  363 (542)
Q Consensus       296 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~---l~~L~~ll~~~~-~~~v~~~a~~~L~~l~  363 (542)
                      .|+.+|.++++.++..++++|++|+...+.........  .+   +..-.+-++... ..++...+...+.++.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998865443332211  11   111223334212 2355556666666663

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=2e-21  Score=183.51  Aligned_cols=221  Identities=14%  Similarity=0.151  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH-hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhh
Q psy12594         56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK-DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISS  133 (542)
Q Consensus        56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~l  133 (542)
                      +.+..|+..|..++  .+.++...+.+.|+++.++. +|.++++.++..|+++|++++.+++..+. +++.|+++.|+.+
T Consensus        55 e~k~~Al~~L~~lv--~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           55 QEREGALELLADLC--ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            56788999999999  88788888999999999999 99999999999999999999999988888 8999999999999


Q ss_pred             hcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594        134 LHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP  212 (542)
Q Consensus       134 L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~  212 (542)
                      |++ +++.++..|+|+|++++.+++...+.+.+.|+++.|+.+|++++..++..|+|+|.+++.++++.+..+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            985 4799999999999999998888888999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh-----chHH-HHHhhcCC--ChhHHHHHHHHHHHHh
Q psy12594        213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADG-----ATTL-AVEHLTYP--HGLVQKNAATLLRDMC  278 (542)
Q Consensus       213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~  278 (542)
                      .|+.+|.++++++++.++++|++|+...+.........     ..+. -+..++..  ..++...+..++.++.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998865443332221     1122 23333422  3566666776666665

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=6e-22  Score=178.76  Aligned_cols=196  Identities=16%  Similarity=0.156  Sum_probs=173.0

Q ss_pred             CChHHHHhhhcCCCH--HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594        125 KDLDSIISSLHDFDP--DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA  202 (542)
Q Consensus       125 g~v~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~  202 (542)
                      -.++.++++|+++++  .++..|+++|.+++..++..+..+.+.|+||.|+++|+++++++|+.|+|+|.||+.++++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            368999999999987  899999999999998889999999999999999999999999999999999999999889999


Q ss_pred             HHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc----------------CCCh
Q psy12594        203 ESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT----------------YPHG  264 (542)
Q Consensus       203 ~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~----------------~~~~  264 (542)
                      ..+.+.|++|.|+++|. .++.++++.++.+|+||+... ..+..+.+. +++ |+.++.                ..++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            99999999999999998 579999999999999999876 467767664 577 887653                1267


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhcC------CccchHHHHHHHhHhhcC
Q psy12594        265 LVQKNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDCN------GGYNSLPAIMALGYMSAQ  322 (542)
Q Consensus       265 ~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~  322 (542)
                      +++++++++|+||+..+++..+.+.+. |+++.|+.+++..      +...+++++.+|.||+..
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            999999999999998888888888876 6689999999873      446889999999999764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=3.9e-21  Score=173.43  Aligned_cols=194  Identities=11%  Similarity=0.120  Sum_probs=171.4

Q ss_pred             cHHHHHHhhccCCH--HHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12594         85 LVALVLKDLTKQNK--HYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE  161 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (542)
                      .++.++++|.++++  .++..++..|.+++..+++.+. +++.|++|.|+++|.++++++++.|+|+|.+++..+++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999998877  8999999999999988878877 99999999999999999999999999999999998899999


Q ss_pred             HHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc----------------CCCHH
Q psy12594        162 RIVQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN----------------NDEVN  224 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~  224 (542)
                      .+.+.|+||.|+++|+ +++.++++.|+.+|.||+. .++.+..+.+ ++++.|+.++.                ..+++
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999998 5789999999999999998 4567777775 56899988653                13679


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHh-hchHH-HHHhhcCC------ChhHHHHHHHHHHHHhcC
Q psy12594        225 VKADAFLCLADIAKDSPSLASTIAD-GATTL-AVEHLTYP------HGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       225 ~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~-L~~lL~~~------~~~v~~~a~~~L~~L~~~  280 (542)
                      +++.+..+|.||+..+++.++.+.+ .|+++ |+.+++..      +...+++++.+|+||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999999999987788998887 46789 99998753      678999999999999853

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.83  E-value=3.5e-19  Score=187.89  Aligned_cols=410  Identities=12%  Similarity=0.072  Sum_probs=295.3

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      ..+|.+..+++++++.+|..|+.+|+.++....++    ......+|.+..++.++++.+|..|+.+|..++...+..  
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD----NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH----HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH----hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--
Confidence            45677778888899999999999999998222222    123467888888898899999999999999987543221  


Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE  200 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~  200 (542)
                      .....+++.+..+++++++.+|..++.+|+.++...+.   ......+++.++++++++++.+|..++++|+.++...+.
T Consensus       238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  314 (588)
T 1b3u_A          238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA  314 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence            12234788888999988999999999999999852211   122345689999999999999999999999999874322


Q ss_pred             H-HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594        201 L-AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC  278 (542)
Q Consensus       201 ~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~  278 (542)
                      . +.......++|.+..++.++++.+|..++++|..++..-+.   ......+++ +..++.+.+++++..++.++..+.
T Consensus       315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~  391 (588)
T 1b3u_A          315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN  391 (588)
T ss_dssp             TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence            1 11122245678899999999999999999999998754221   112235778 889999889999999999999887


Q ss_pred             cCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHH
Q psy12594        279 KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT  358 (542)
Q Consensus       279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  358 (542)
                      .......   .....+|.+..++.+.++.++..++.+++.++..-...   .....+++.+...+.+. +..+|..|+.+
T Consensus       392 ~~~~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~  464 (588)
T 1b3u_A          392 EVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSN  464 (588)
T ss_dssp             HHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHH
T ss_pred             HhcCHHH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHH
Confidence            5432111   12356788889999999999999999999887521110   11224678888888874 46899999999


Q ss_pred             HHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------CCchhhHHhhcCCCCHHHHHH
Q psy12594        359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------ENPKELEQMLLGNVSEELLAS  431 (542)
Q Consensus       359 L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------~~i~~L~~lL~~~~~~~v~~~  431 (542)
                      ++.++......   .....++|.|..++.++  +..+|..++++++.+....       ..++.|..++. +.+++++..
T Consensus       465 l~~l~~~~~~~---~~~~~llp~l~~~~~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~  538 (588)
T 1b3u_A          465 LKKLVEKFGKE---WAHATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG-DPVANVRFN  538 (588)
T ss_dssp             HHHHHHHHCHH---HHHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-CSCHHHHHH
T ss_pred             HHHHHHHhCch---hHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC-CCCchHHHH
Confidence            99997542221   12345788888877765  5699999999999997532       35788888898 889999999


Q ss_pred             HHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHHH-HHHHHhcc
Q psy12594        432 ILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAP-HLKTINAC  478 (542)
Q Consensus       432 ~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~~-a~~~l~~~  478 (542)
                      ++.++..+......   .+.....++.+..+.  ++.+++. |...+..+
T Consensus       539 a~~~l~~l~~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          539 VAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence            99999988754321   222333445555554  4555663 55555443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.82  E-value=3.1e-19  Score=196.49  Aligned_cols=381  Identities=11%  Similarity=0.089  Sum_probs=270.1

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-  120 (542)
                      +-+.++..+.++++.+|..++.++..++....+..     ..+.++.++..+.++++.++..++.+|..++...+.... 
T Consensus        91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~  165 (852)
T 4fdd_A           91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS  165 (852)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch
Confidence            34456667788889999999999999993322221     456889999999999999999999999999864332211 


Q ss_pred             -H---hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594        121 -L---IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       121 -~---~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~  196 (542)
                       .   .-...++.++++++++++.+|..|+++|..+....+....... ..+++.+++++.++++.+|..++++|.+++.
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~  244 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLE  244 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence             0   0124678888999999999999999999988754432111111 1457888889999999999999999999998


Q ss_pred             CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH--hhchHH-HHHhh-----------cC-
Q psy12594        197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA--DGATTL-AVEHL-----------TY-  261 (542)
Q Consensus       197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~-L~~lL-----------~~-  261 (542)
                      ..++.....+ .++++.+...+.+.+++++..+++++..+++... .+..+.  -..+++ ++..+           .+ 
T Consensus       245 ~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~  322 (852)
T 4fdd_A          245 VRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  322 (852)
T ss_dssp             HCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred             hCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence            7765544333 2467888889999999999999999999997642 333221  135667 77776           23 


Q ss_pred             ----------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594        262 ----------PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII  331 (542)
Q Consensus       262 ----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  331 (542)
                                .+..++..+..+|..++...++.   +. ..+++.+..++.++++.+|..|++++++++.+..+......
T Consensus       323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l  398 (852)
T 4fdd_A          323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL  398 (852)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                      12246888999999988643321   11 24677888888899999999999999999988765443322


Q ss_pred             hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594        332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE  411 (542)
Q Consensus       332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~  411 (542)
                       .++++.++..+.++ ++.+|..|+|++++++...+.......-.++++.|+..+.++  ++.+|..|+|+|.+++..++
T Consensus       399 -~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~  474 (852)
T 4fdd_A          399 -PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEAC  474 (852)
T ss_dssp             -HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHG
T ss_pred             -HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhh
Confidence             46889999999874 569999999999999753221111111224678888888876  57999999999999986532


Q ss_pred             -----C----chhhHHhhcCCCCHHHHHHHHHHHHhh
Q psy12594        412 -----N----PKELEQMLLGNVSEELLASILCAFAKI  439 (542)
Q Consensus       412 -----~----i~~L~~lL~~~~~~~v~~~~l~~l~~l  439 (542)
                           +    ++.|..+++ ..+.+....++.++..+
T Consensus       475 ~~l~~~l~~ll~~L~~~l~-~~~~~~~~~~~~ai~~l  510 (852)
T 4fdd_A          475 TELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTL  510 (852)
T ss_dssp             GGGGGGHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred             HhhHhHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHH
Confidence                 1    344555555 44444444444444443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.82  E-value=2e-18  Score=189.95  Aligned_cols=409  Identities=12%  Similarity=0.086  Sum_probs=289.1

Q ss_pred             hHHHHHHHHH----HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhh---cCCChHHHHHHHHHHHHhHccCC----
Q psy12594          5 SVKNSIDHYQ----RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLL---ADKVPSIQHAALATLGKLMCAKH----   73 (542)
Q Consensus         5 ~~~~~~~~~~----~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL---~s~~~~v~~~a~~~L~~l~~~~~----   73 (542)
                      ++.|.+....    ..|+.+.+.|..+..+|         +..+.|..++   .+.++.+|..|+..|.+......    
T Consensus        14 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p---------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~   84 (852)
T 4fdd_A           14 QILQLLKESQSPDTTIQRTVQQKLEQLNQYP---------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP   84 (852)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHTTSH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCC
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCC
Confidence            4445554332    35777777777665433         3333444444   46788999999999999883221    


Q ss_pred             hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh
Q psy12594         74 VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLA  153 (542)
Q Consensus        74 ~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~  153 (542)
                      ++.+..     +-+.+++.|.++++.+|..++.++..++......   .-.+.++.|++.+.++++.+++.++.+|..++
T Consensus        85 ~~~~~~-----ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~  156 (852)
T 4fdd_A           85 NGVTDF-----IKSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC  156 (852)
T ss_dssp             HHHHHH-----HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            233332     3346777788889999999999999998654110   11357889999999999999999999999998


Q ss_pred             cCChHHHHH-HH---HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHH
Q psy12594        154 KDNKHFAER-IV---QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADA  229 (542)
Q Consensus       154 ~~~~~~~~~-i~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a  229 (542)
                      ...+..... ..   -..+++.++++++++++.+|..|+++|.++....+......+ ...++.+..++.++++++|..+
T Consensus       157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a  235 (852)
T 4fdd_A          157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNV  235 (852)
T ss_dssp             HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHH
Confidence            643332111 00   113577888888989999999999999998875443221111 2466888888889999999999


Q ss_pred             HHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh---cCCHHHHHHhh----
Q psy12594        230 FLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVL---AGGLDGLLRLI----  301 (542)
Q Consensus       230 ~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~---~~~i~~Lv~lL----  301 (542)
                      +++|..++...++...... .++++ ++..+.+.++.++..+++++..++...... + ...   ...+|.++..+    
T Consensus       236 ~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~-~~~~~~~~l~p~ll~~l~~~e  312 (852)
T 4fdd_A          236 CRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-D-VLVRHLPKLIPVLVNGMKYSD  312 (852)
T ss_dssp             HHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-H-HHTTTHHHHHHHHHHHTSCCH
T ss_pred             HHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-H-HHHHHHHHHHHHHHHHcCCcH
Confidence            9999999987664433322 35788 889999999999999999999998654221 1 111   13455666655    


Q ss_pred             -------hc-----------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594        302 -------DC-----------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIG  363 (542)
Q Consensus       302 -------~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  363 (542)
                             .+           .++.++..|..+|+.++...++.   +. ..+++.+...+.++ +..+|..|++++++++
T Consensus       313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~  387 (852)
T 4fdd_A          313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIA  387 (852)
T ss_dssp             HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTT
T ss_pred             hHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence                   22           23457889999999987643321   11 24677788888774 5799999999999998


Q ss_pred             cCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC----------CCchhhHHhhcCCCCHHHHHHHH
Q psy12594        364 KHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC----------ENPKELEQMLLGNVSEELLASIL  433 (542)
Q Consensus       364 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~----------~~i~~L~~lL~~~~~~~v~~~~l  433 (542)
                      .+.++..... -.++++.++..+.++  ++.||..|+|+|+++....          +.++.|...+. +.++.++..++
T Consensus       388 ~~~~~~~~~~-l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~-d~~~~vr~~a~  463 (852)
T 4fdd_A          388 EGCMQGMIPY-LPELIPHLIQCLSDK--KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-DSNKRVQEAAC  463 (852)
T ss_dssp             TTTHHHHGGG-HHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT-CSSHHHHHHHH
T ss_pred             hcchHHHHHH-HHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-CCCHHHHHHHH
Confidence            8776543322 245789999999877  5799999999999987531          12467777787 88899999999


Q ss_pred             HHHHhhCCCC
Q psy12594        434 CAFAKILPCD  443 (542)
Q Consensus       434 ~~l~~ll~~~  443 (542)
                      ++|.++....
T Consensus       464 ~aL~~l~~~~  473 (852)
T 4fdd_A          464 SAFATLEEEA  473 (852)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.82  E-value=1.3e-18  Score=183.54  Aligned_cols=399  Identities=10%  Similarity=0.046  Sum_probs=291.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL   93 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L   93 (542)
                      ...|..+.+++..++..-...  ......+|.+..+++++++.+|..|+.+|..++....++.    .....+|.+..++
T Consensus       178 ~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~~  251 (588)
T 1b3u_A          178 PMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAA  251 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH----HHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHc
Confidence            345666777777666532221  2235678899999999999999999999999983323221    1234677888888


Q ss_pred             ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHH
Q psy12594         94 TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKH-FAERIVQCGALPPL  172 (542)
Q Consensus        94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L  172 (542)
                      .+++..+|..++.+|+.++.....  ......+++.+..+++++++.+|..++++|..++...+. .+....-..++|.+
T Consensus       252 ~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l  329 (588)
T 1b3u_A          252 EDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI  329 (588)
T ss_dssp             TCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence            888999999999999998753211  122335689999999999999999999999999854321 11112233567889


Q ss_pred             HHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhch
Q psy12594        173 VQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGAT  252 (542)
Q Consensus       173 ~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  252 (542)
                      ..+++++++.+|..++++|+.++..-..   .......+|.+..++.+.++++|..++.++..++......   .....+
T Consensus       330 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~  403 (588)
T 1b3u_A          330 KELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSL  403 (588)
T ss_dssp             HHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHH
Confidence            9999999999999999999998863111   1112346789999999999999999999999887643211   122467


Q ss_pred             HH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594        253 TL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII  331 (542)
Q Consensus       253 i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  331 (542)
                      +| +..++.+.+..++..++.++..++..-...   ......++.+..++.++++.++..|+.+++.++......   ..
T Consensus       404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~  477 (588)
T 1b3u_A          404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WA  477 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hH
Confidence            88 889998889999999999999987421110   111245788889999999999999999999987642221   12


Q ss_pred             hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594        332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE  411 (542)
Q Consensus       332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~  411 (542)
                      ...+++.|..++.+ ++..+|..++++++.++..-..   ......+++.++..+.++  +++||..++++|+.+....+
T Consensus       478 ~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~  551 (588)
T 1b3u_A          478 HATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             HHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhc
Confidence            24678888887776 4468999999999999653221   123346889999999876  56999999999999986432


Q ss_pred             -------CchhhHHhhcCCCCHHHHHHHHHHHHhh
Q psy12594        412 -------NPKELEQMLLGNVSEELLASILCAFAKI  439 (542)
Q Consensus       412 -------~i~~L~~lL~~~~~~~v~~~~l~~l~~l  439 (542)
                             .+|.|..++. +.|++++..+..++..+
T Consensus       552 ~~~~~~~~~p~l~~l~~-d~d~~vr~~a~~al~~l  585 (588)
T 1b3u_A          552 NSTLQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHHcC-CCchhHHHHHHHHHHHh
Confidence                   3566767777 88999999999998876

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.81  E-value=2.4e-16  Score=158.81  Aligned_cols=413  Identities=13%  Similarity=0.123  Sum_probs=308.7

Q ss_pred             CchHHHHhhhc-CCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCh
Q psy12594         41 NVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVAQQDE  116 (542)
Q Consensus        41 g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~  116 (542)
                      ..|+.|+.-++ +.-.+-|..|+..|..++  .. +..    +..++++.|+..|+.  ++.++.+.++.+|.++....+
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s--k~y~~~----Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLS--KKYRLE----VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTT--TTTTTH----HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHH--HHhHHH----hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            34566666665 445788999999999998  44 221    235689999999986  578888999999988765432


Q ss_pred             h-----------------hhh--HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHc-CChHHHHHh
Q psy12594        117 R-----------------CAG--LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKH-FAERIVQC-GALPPLVQI  175 (542)
Q Consensus       117 ~-----------------~~~--~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~l  175 (542)
                      +                 ...  +.+.+.++.|+.+|++.+..+|..++.+|..++...+. +++.+... ++++.|+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence            1                 112  23567899999999999999999999999999987777 88888866 889999999


Q ss_pred             ccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594        176 LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE----VNVKADAFLCLADIAKDSPSLASTIADGA  251 (542)
Q Consensus       176 l~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  251 (542)
                      |.++...+|..++..|.+|+.++++..+.+.-+|+++.|..++....    ..+...|+.++.||.+.++.++..+.+.+
T Consensus       175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            99999999999999999999999999999888999999999998543    36889999999999999988999999999


Q ss_pred             hHH-HHHhhcCCCh------hHHHH---HHHHHHHHhcC------ChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHH
Q psy12594        252 TTL-AVEHLTYPHG------LVQKN---AATLLRDMCKH------NLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAI  313 (542)
Q Consensus       252 ~i~-L~~lL~~~~~------~v~~~---a~~~L~~L~~~------~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~  313 (542)
                      .++ |..+|..+++      ....+   +..+++-|+..      .+.+...+.+.|+++.|++++...  ...++..|+
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999 9999986532      13333   56666666654      235667788999999999999876  345889999


Q ss_pred             HHHhHhhcCChHHHHHHHhhC---------chHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHc--------
Q psy12594        314 MALGYMSAQSEQIAEQIIELQ---------GVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEE--------  376 (542)
Q Consensus       314 ~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--------  376 (542)
                      .+++.+..+++..+..+.+..         ++..|+.++.+.....+|.+|+.++..+..++++.+..+...        
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~  414 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDA  414 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCccccc
Confidence            999999999999888876543         344445556554557899999999999999998776666643        


Q ss_pred             --CCh---HHHHHHHhcCCCChHHH-HHHHHHHHHHHhhC------------------CC---chhhHHhhcCCCCHHHH
Q psy12594        377 --NVL---STLLSKITQTCVSDNLK-SKCKNALNILIPKC------------------EN---PKELEQMLLGNVSEELL  429 (542)
Q Consensus       377 --~~l---~~L~~ll~~~~~~~~v~-~~a~~aL~nl~~~~------------------~~---i~~L~~lL~~~~~~~v~  429 (542)
                        +.+   ..+...+-+.+   ..+ --|+.+|..++...                  +.   ++.+..+|....++.+.
T Consensus       415 ~~~~~s~g~ll~~~l~s~d---~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~  491 (651)
T 3grl_A          415 TGNTVSAGQLLCGGLFSTD---SLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTR  491 (651)
T ss_dssp             TTSSSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHH
T ss_pred             CCCCCCcchhhhhhhccCc---hHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHH
Confidence              111   12334444332   222 23666777775210                  11   34445555424566777


Q ss_pred             HHHHHHHHhhCCCChhhhhHHHHhc-chHHhhhc
Q psy12594        430 ASILCAFAKILPCDPVARRSFVTSH-CLRKVQEI  462 (542)
Q Consensus       430 ~~~l~~l~~ll~~~~~~~~~~~~~g-~~~~l~~l  462 (542)
                      .-.+-.|..-+..++..-+.|...| .++.|...
T Consensus       492 vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~  525 (651)
T 3grl_A          492 VGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQ  525 (651)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHH
Confidence            7777777788888887766666554 46666543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.79  E-value=1e-17  Score=175.89  Aligned_cols=373  Identities=15%  Similarity=0.128  Sum_probs=270.2

Q ss_pred             CCchHHHHhhhcCCChHHHHHHH-HHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAAL-ATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~-~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      .|-+..+.+.|++.+...+..++ +.+..+.  ...+.      ..+++.+++++.+++..+|+.+..++..++...++.
T Consensus        12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~--~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~   83 (591)
T 2vgl_B           12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMT--VGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM   83 (591)
T ss_dssp             SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHH--TTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHHHHHHH--CCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH
Confidence            46677888899998887777766 4444444  22211      336778889999999999999988998888655444


Q ss_pred             hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                      ..    -+++.+.+.|+++++.+|..|+.+|+++.  .++..+.+     ++.+.+++.++++.+|..|++++.++...+
T Consensus        84 ~~----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~  152 (591)
T 2vgl_B           84 AI----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN  152 (591)
T ss_dssp             HH----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS
T ss_pred             HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhC
Confidence            33    24678899999999999999999999886  34443433     678999999999999999999999999876


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                      ++...   +.+.++.+..++.++++.++..|+++|..++..+++..........+. |+..+.+.++..+...+.++..+
T Consensus       153 p~~~~---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l  229 (591)
T 2vgl_B          153 AQMVE---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY  229 (591)
T ss_dssp             CCCHH---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred             hhhcc---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence            65332   235679999999999999999999999999987653311111234566 88888888999999999999888


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc---CChHHHHHHHhhCchHHHHHhhcCCChhhHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA---QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVA  354 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  354 (542)
                      +..++....     ..++.+..++++.++.++..|++++.++..   .+++..+.+. ..+.+.|+.++.  +++.+|..
T Consensus       230 ~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~  301 (591)
T 2vgl_B          230 NPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYV  301 (591)
T ss_dssp             CCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHH
T ss_pred             CCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHH
Confidence            866554332     456788889999999999999999999864   2334443333 255667776654  34688888


Q ss_pred             HHHHHHHhhcCChHH------------------HHHH-------HHcC----ChHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy12594        355 AAWTLGQIGKHSVDN------------------VTAL-------CEEN----VLSTLLSKITQTCVSDNLKSKCKNALNI  405 (542)
Q Consensus       355 a~~~L~~l~~~~~~~------------------~~~l-------~~~~----~l~~L~~ll~~~~~~~~v~~~a~~aL~n  405 (542)
                      |+.+|+.+....|+.                  +...       .+..    +++.|...+.+.  +.++|.+++++|++
T Consensus       302 aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI~~  379 (591)
T 2vgl_B          302 ALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV--DVDFVRKAVRAIGR  379 (591)
T ss_dssp             HHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence            888888886422211                  1111       1222    334444555444  57899999999999


Q ss_pred             HHhhC-----CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594        406 LIPKC-----ENPKELEQMLLGNVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       406 l~~~~-----~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                      +..+.     .+++.|++++. +....+...++.++.++++..+.
T Consensus       380 la~~~~~~~~~~v~~Ll~ll~-~~~~~v~~e~i~~l~~ii~~~p~  423 (591)
T 2vgl_B          380 CAIKVEQSAERCVSTLLDLIQ-TKVNYVVQEAIVVIRDIFRKYPN  423 (591)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHhChhHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHCcc
Confidence            87542     34788888888 88888888888888887665544

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.78  E-value=3.6e-15  Score=150.37  Aligned_cols=352  Identities=11%  Similarity=0.085  Sum_probs=268.0

Q ss_pred             HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc-CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh
Q psy12594         38 KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE  116 (542)
Q Consensus        38 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~-~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~  116 (542)
                      .+.+.++.|+.+|++.+..+|..++..|..|+....+..++.+... ++++.|+.+|.+....+|..++..|.+++.+++
T Consensus       119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~  198 (651)
T 3grl_A          119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG  198 (651)
T ss_dssp             HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH
Confidence            4578999999999999999999999999999943335588888855 999999999999999999999999999999999


Q ss_pred             hhhh-HhhcCChHHHHhhhcCCC----HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCH------hHHH
Q psy12594        117 RCAG-LIEDKDLDSIISSLHDFD----PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL------SLKH  185 (542)
Q Consensus       117 ~~~~-~~~~g~v~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~------~~~~  185 (542)
                      ++++ +.-+|+++.|+.++..+.    ..+...++.+|.++.+.++.++..+.+.|+++.|..+++.++.      ....
T Consensus       199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~  278 (651)
T 3grl_A          199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT  278 (651)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence            9999 777899999999998655    3778889999999999999999999999999999999975431      1222


Q ss_pred             ---HHHHHHHHHhcC------CHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhc---
Q psy12594        186 ---AAAFALDGIVKH------SPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGA---  251 (542)
Q Consensus       186 ---~a~~~L~nl~~~------~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---  251 (542)
                         .++.++.-+...      .+.+...+.+.|+++.+++++..+  ...++..|+.+++.+.+.++..++.+....   
T Consensus       279 N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~  358 (651)
T 3grl_A          279 NLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPS  358 (651)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESS
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCC
Confidence               255566666654      235667888999999999998865  788999999999999999988888876532   


Q ss_pred             ------hHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcC----------CH---HHHHHhhhcCCccchH
Q psy12594        252 ------TTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAG----------GL---DGLLRLIDCNGGYNSL  310 (542)
Q Consensus       252 ------~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~----------~i---~~Lv~lL~~~~~~~~~  310 (542)
                            ++. |+.++.+. ..++|..++.|+..+..++++....+...-          .+   ..+..-+.+.++.-.-
T Consensus       359 ~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~w  438 (651)
T 3grl_A          359 NPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNW  438 (651)
T ss_dssp             SSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHH
T ss_pred             CCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHH
Confidence                  444 55556554 688999999999999988876665554320          01   1233444455554444


Q ss_pred             HHHHHHhHhhcCChHHHHHHHh-----------hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcC-C
Q psy12594        311 PAIMALGYMSAQSEQIAEQIIE-----------LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEEN-V  378 (542)
Q Consensus       311 ~a~~~L~~l~~~~~~~~~~~~~-----------~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~  378 (542)
                      -|+.++.++..++++......+           -..++.+..+|..+.+..++..-+..|..-..+++.....+++.+ .
T Consensus       439 fAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~  518 (651)
T 3grl_A          439 CAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSAN  518 (651)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCch
Confidence            5677788888777766555443           123555666666654455555555555555577888888888765 5


Q ss_pred             hHHHHHHHhcC
Q psy12594        379 LSTLLSKITQT  389 (542)
Q Consensus       379 l~~L~~ll~~~  389 (542)
                      ++.|+..+.++
T Consensus       519 l~~L~~~i~~~  529 (651)
T 3grl_A          519 VPFLTGQIAEN  529 (651)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHhc
Confidence            88888877643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.77  E-value=1.2e-16  Score=151.69  Aligned_cols=258  Identities=18%  Similarity=0.070  Sum_probs=205.2

Q ss_pred             HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh
Q psy12594         38 KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER  117 (542)
Q Consensus        38 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~  117 (542)
                      .+.+.++.|+.+|+++++.+|..|+.+|+++.            ..+.++.|+.++.++++.+|..++++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~------------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC------------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            35678999999999999999999999999997            234678899999999999999999999988643321


Q ss_pred             hhhHhhcCChHHHH-hhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594        118 CAGLIEDKDLDSII-SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       118 ~~~~~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~  196 (542)
                      ...     .++.|. .+++++++.+|..++++|+.+....+....     .+++.|+.+++++++.+|..++++|+++..
T Consensus        88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111     233444 245788999999999999999854332222     237889999999999999999999998865


Q ss_pred             CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594        197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR  275 (542)
Q Consensus       197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~  275 (542)
                                 ...++.|..++.++++.+|..++++|+.+....+         ..++ |+.++.++++.++..++++|.
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~  217 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS  217 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                       3588999999999999999999999999864433         5677 999999999999999999999


Q ss_pred             HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594        276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA  355 (542)
Q Consensus       276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  355 (542)
                      .+.           ....++.|+..+.+++  ++..++.+|+.+..           ...++.|..++...+++.+...+
T Consensus       218 ~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~  273 (280)
T 1oyz_A          218 YRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA  273 (280)
T ss_dssp             HTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred             HhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence            886           2457788888887744  89999999998853           25788899999876666777777


Q ss_pred             HHHHHH
Q psy12594        356 AWTLGQ  361 (542)
Q Consensus       356 ~~~L~~  361 (542)
                      ...|.+
T Consensus       274 ~~~l~~  279 (280)
T 1oyz_A          274 IDKLKR  279 (280)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            766643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.74  E-value=2.1e-16  Score=165.84  Aligned_cols=368  Identities=14%  Similarity=0.135  Sum_probs=267.6

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-  120 (542)
                      .+|.+..++.+.++.+|..|+.++.++... +++..   .+.++++.+..+|.++++.++..|+.+|..++..+++... 
T Consensus       122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence            456688899999999999999999999831 23321   1246788999999999999999999999999977653311 


Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC---
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH---  197 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~---  197 (542)
                      ....+.+..|+..+.+.++..+...+.++..+...++....     .+++.+..++++.++.++..|++++..+...   
T Consensus       198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~  272 (591)
T 2vgl_B          198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPK  272 (591)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred             hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence            11224567788888888999998888888888755544333     3477788889999999999999999998742   


Q ss_pred             CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                      +++....+. ..+.+.|+.++. +++++|..++.+|..+....++...     ..+. +. .+.+++..++..+++.+..
T Consensus       273 ~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~  344 (591)
T 2vgl_B          273 DSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIR  344 (591)
T ss_dssp             TTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHH
Confidence            333333333 455677776664 8899999999999999876543221     1122 22 2224458999999999999


Q ss_pred             HhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594        277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA  356 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  356 (542)
                      ++....  .+     .+++.|..++.+.++.++..++++|+.++...+....     ..++.|+.++.... +.++..+.
T Consensus       345 l~~~~n--v~-----~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~-~~v~~e~i  411 (591)
T 2vgl_B          345 LASQAN--IA-----QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKV-NYVVQEAI  411 (591)
T ss_dssp             TCCSST--HH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCC-HHHHHHHH
T ss_pred             HCChhh--HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccc-hHHHHHHH
Confidence            985432  22     2456788899899999999999999999987654333     46788999998854 47888888


Q ss_pred             HHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHH-hhcC--CCCHHHHHHHH
Q psy12594        357 WTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ-MLLG--NVSEELLASIL  433 (542)
Q Consensus       357 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~-lL~~--~~~~~v~~~~l  433 (542)
                      .++.++....++.     ...+++.|+..+.+.. .++++..++|+|+.........+.+++ +++.  ..++.++..++
T Consensus       412 ~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~-~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l  485 (591)
T 2vgl_B          412 VVIRDIFRKYPNK-----YESIIATLCENLDSLD-EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLL  485 (591)
T ss_dssp             HHHHHHHHHSCSS-----CCTTHHHHHHTTTTCC-SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHH
T ss_pred             HHHHHHHHHCcch-----HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHH
Confidence            8888887655542     2457788888887543 578999999999988654332233332 3321  45778999999


Q ss_pred             HHHHhhCCCChh
Q psy12594        434 CAFAKILPCDPV  445 (542)
Q Consensus       434 ~~l~~ll~~~~~  445 (542)
                      .++.++....+.
T Consensus       486 ~a~~Kl~~~~p~  497 (591)
T 2vgl_B          486 TAIVKLFLKKPS  497 (591)
T ss_dssp             HHHHHHHTTCCS
T ss_pred             HHHHHHHhcCch
Confidence            999999877654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.74  E-value=5.1e-16  Score=147.34  Aligned_cols=258  Identities=18%  Similarity=0.142  Sum_probs=203.9

Q ss_pred             hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594        122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL  201 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~  201 (542)
                      ...+.++.|+..|.++++.+|..|+++|+++..  +         +.++.|+.+++++++.+|..|+++|+.+..... .
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-C   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-T
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-c
Confidence            355789999999999999999999999999863  2         238889999999999999999999999875221 1


Q ss_pred             HHHhhhCCChHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        202 AESASDCDVIPLLI-KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       202 ~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                      ...     .++.|. .++.++++.+|..++++|+++....+...     ...++ |+..+.++++.++..++++|.++..
T Consensus        88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111     223444 24568899999999999999985443222     25678 9999999999999999999998763


Q ss_pred             CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHH
Q psy12594        280 HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTL  359 (542)
Q Consensus       280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  359 (542)
                                 ...++.|+.++.++++.++..++++|+.+....+         ..++.|..++.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       3588999999999999999999999999854333         3567788888874 569999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHHh
Q psy12594        360 GQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAK  438 (542)
Q Consensus       360 ~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~  438 (542)
                      +++.  ++         ..++.|+..+.++    ++|..|+++|+.+... ..++.|..++....+++++..++..+.+
T Consensus       217 ~~~~--~~---------~~~~~L~~~l~d~----~vr~~a~~aL~~i~~~-~~~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          217 SYRK--DK---------RVLSVLCDELKKN----TVYDDIIEAAGELGDK-TLLPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHTT--CG---------GGHHHHHHHHTSS----SCCHHHHHHHHHHCCG-GGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHhC--CH---------hhHHHHHHHhcCc----cHHHHHHHHHHhcCch-hhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            9994  33         3788999999864    4999999999998643 6789999999734567888888887764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.69  E-value=8.9e-15  Score=154.06  Aligned_cols=390  Identities=12%  Similarity=0.108  Sum_probs=279.5

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~  120 (542)
                      +.+..++++.+.+...+..+...+..++  .. ++....     .++.+.+-|.++++.++..|+.+|+++..  ++.. 
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~--~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-  140 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLL--DERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-  140 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHC--CCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHh--CCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-
Confidence            4556678888889999988888888888  54 443222     45677888889999999999999999973  2322 


Q ss_pred             HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594        121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE  200 (542)
Q Consensus       121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~  200 (542)
                         ..+++.+.++|.+.++.+|..|+.++.++....|+..+     ++++.+..++.+.++.++..|+++|..++..+++
T Consensus       141 ---~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          141 ---RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             ---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence               24578889999999999999999999999976665332     5688889999999999999999999999987665


Q ss_pred             HHHHhhhCCChHHHHHhhcC---------------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc----
Q psy12594        201 LAESASDCDVIPLLIKALNN---------------DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT----  260 (542)
Q Consensus       201 ~~~~~~~~~~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~----  260 (542)
                      ....+  ...+|.++.+|.+               .++-.+..++.+|..++..++...+     ...+ |..++.    
T Consensus       213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~  285 (618)
T 1w63_A          213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTET  285 (618)
T ss_dssp             HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCC
T ss_pred             HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccc
Confidence            43333  2677888877653               4788899999999999987764333     3334 444432    


Q ss_pred             --CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHH
Q psy12594        261 --YPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGS  338 (542)
Q Consensus       261 --~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  338 (542)
                        +.+..+...+++++..+.. .+...     ..+++.|..++.+.++.++..|+.+|+.++...+...    . .....
T Consensus       286 ~~~~~~aV~~ea~~~i~~l~~-~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~  354 (618)
T 1w63_A          286 SKNVGNAILYETVLTIMDIKS-ESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRST  354 (618)
T ss_dssp             SSTHHHHHHHHHHHHHHHSCC-CHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCC-CHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHH
Confidence              2356899999999988754 23221     2456788899999999999999999999987544322    2 35667


Q ss_pred             HHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-----Cc
Q psy12594        339 LQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE-----NP  413 (542)
Q Consensus       339 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~-----~i  413 (542)
                      ++..+.++ +..+|..|+.+|..++....  ...     +++.|...+.+.  +.++|..++.+|+.+..+..     ++
T Consensus       355 i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~--d~e~r~~~v~~I~~la~k~~~~~~~~v  424 (618)
T 1w63_A          355 IVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC--EPEFKADCASGIFLAAEKYAPSKRWHI  424 (618)
T ss_dssp             HHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             HHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            78888874 56999999999999965432  222     346677777765  57999999999999987632     36


Q ss_pred             hhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC-CCCcHHHHHHHHhccC
Q psy12594        414 KELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE-PTPEIAPHLKTINACF  479 (542)
Q Consensus       414 ~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~-~~~~~~~a~~~l~~~~  479 (542)
                      +.|+++|. .....+...++..+..++...++.++..+.. -++.+..-. .....+.+.++|++|.
T Consensus       425 ~~ll~lL~-~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~-L~~~l~~~~~~~~~~~~~~wilGEy~  489 (618)
T 1w63_A          425 DTIMRVLT-TAGSYVRDDAVPNLIQLITNSVEMHAYTVQR-LYKAILGDYSQQPLVQVAAWCIGEYG  489 (618)
T ss_dssp             HHHHHHHH-HTGGGSCSSHHHHHHHHHHHSCSTHHHHHHH-HHHHHHHCCSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hccchhHHHHHHHHHHHHhcChhHHHHHHHH-HHHHHhcccccHHHHHHHHHHHhhhH
Confidence            77888887 6655566666666766666666544433321 122222211 2222445778887774

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.67  E-value=6.1e-15  Score=155.30  Aligned_cols=362  Identities=15%  Similarity=0.065  Sum_probs=218.8

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      ++..|.+-|++.++.+|..|+.+|+++.  . ++..     ...++.+.++|.+.++.+|+.|+.++.++....++... 
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~--~-~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMG--S-SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHC--C-HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcC--C-HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-
Confidence            3455666678899999999999999998  3 2221     24678888999999999999999999999876654332 


Q ss_pred             hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC---------------CCHhHHHH
Q psy12594        122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS---------------PQLSLKHA  186 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~---------------~~~~~~~~  186 (542)
                         +.++.+..++.+.|+.++..|+.+|..++..+++....+.  ..+|.++++|.+               .++-.+..
T Consensus       179 ---~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~  253 (618)
T 1w63_A          179 ---MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR  253 (618)
T ss_dssp             ---GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred             ---HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence               5788889999999999999999999999976655322332  567888877653               36778888


Q ss_pred             HHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhh
Q psy12594        187 AAFALDGIVKHSPELAESASDCDVIPLLIKALN------NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHL  259 (542)
Q Consensus       187 a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL  259 (542)
                      .+.+|+.++..+++....     ..+.|..++.      +.+..+...+++++..+... +...     ..++. |..++
T Consensus       254 il~~L~~l~~~~~~~~~~-----~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L  322 (618)
T 1w63_A          254 ILRLLRILGRNDDDSSEA-----MNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFL  322 (618)
T ss_dssp             HHHHHHHHTTTCHHHHHT-----THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHH-----HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHH
Confidence            889999988876653322     2233444332      11234555555555554321 1111     12344 55555


Q ss_pred             cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHH
Q psy12594        260 TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSL  339 (542)
Q Consensus       260 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  339 (542)
                      .++++.++..++.+|..+....|...     ....+.++.++.+++..++..|+.+|..++....  ...     +++.|
T Consensus       323 ~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL  390 (618)
T 1w63_A          323 LNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKEL  390 (618)
T ss_dssp             TCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHH
T ss_pred             hCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHH
Confidence            55555555555555555554433221     1233445555555555555555555555544321  111     12333


Q ss_pred             HHhhcCCChhhHHHHHHHHHHHhhc-------------------------------------CChHHHHHHHHcCChHHH
Q psy12594        340 QTILQCPHKEQLQVAAAWTLGQIGK-------------------------------------HSVDNVTALCEENVLSTL  382 (542)
Q Consensus       340 ~~ll~~~~~~~v~~~a~~~L~~l~~-------------------------------------~~~~~~~~l~~~~~l~~L  382 (542)
                      ...+.+. +.+++..+..+++.++.                                     ..|+...     .+++.|
T Consensus       391 ~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~-----~~v~~L  464 (618)
T 1w63_A          391 LYFLDSC-EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHA-----YTVQRL  464 (618)
T ss_dssp             HHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHH-----HHHHHH
T ss_pred             HHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHH-----HHHHHH
Confidence            3333332 23455555555555543                                     2222211     145567


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHhhCC----------------CchhhHHhhcC-CCCHHHHHHHHHHHHhhCCCChh
Q psy12594        383 LSKITQTCVSDNLKSKCKNALNILIPKCE----------------NPKELEQMLLG-NVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       383 ~~ll~~~~~~~~v~~~a~~aL~nl~~~~~----------------~i~~L~~lL~~-~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                      +..+.+....+.+...++|.|+.......                .++.|..+++. ..++.++..++.++.++....+.
T Consensus       465 ~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~  544 (618)
T 1w63_A          465 YKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC  544 (618)
T ss_dssp             HHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc
Confidence            77777532233555678999999864310                23445555541 34678899999999888777654


Q ss_pred             h
Q psy12594        446 A  446 (542)
Q Consensus       446 ~  446 (542)
                      .
T Consensus       545 ~  545 (618)
T 1w63_A          545 T  545 (618)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.65  E-value=1.2e-14  Score=160.36  Aligned_cols=414  Identities=14%  Similarity=0.115  Sum_probs=276.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHH----HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHH
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFL----KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALV   89 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l----~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~L   89 (542)
                      ...|..+++++..+...  ....+    .....++.|..++.+.++.+|..++.+|..++....+.....+ ....++.+
T Consensus       195 ~~vr~~al~~l~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~  271 (861)
T 2bpt_A          195 KAVRLAALNALADSLIF--IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALT  271 (861)
T ss_dssp             HHHHHHHHHHHHHHGGG--CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            44677778877765431  01111    0123567777788888999999999999999932222222222 22566777


Q ss_pred             HHhhccCCHHHHHHHHHHHHHHhcCChh-----------------hhhHhhcCChHHHHhhhcCC-------CHHHHHHH
Q psy12594         90 LKDLTKQNKHYKKTALHMLTCVAQQDER-----------------CAGLIEDKDLDSIISSLHDF-------DPDTRANA  145 (542)
Q Consensus        90 v~~L~~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~~~~g~v~~Lv~lL~~~-------~~~~~~~a  145 (542)
                      ...+.+.++.++..++.++..++.....                 ...-.-..+++.++..+...       +..+|..+
T Consensus       272 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a  351 (861)
T 2bpt_A          272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA  351 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence            7788888999999999999988754211                 11101134677788777642       35789999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCCCHH
Q psy12594        146 ALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS-PELAESASDCDVIPLLIKALNNDEVN  224 (542)
Q Consensus       146 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~  224 (542)
                      ..+|..++...+.   .++ ..+++.+.+.+.+.+...|+.++++++.++.+. ++.....+ ..+++.+...+.++++.
T Consensus       352 ~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~  426 (861)
T 2bpt_A          352 GACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQ  426 (861)
T ss_dssp             HHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHH
Confidence            9999988853221   111 123667777888888999999999999999754 23333333 35678899999999999


Q ss_pred             HHHHHHHHHHHHhcCChhhH-HHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCC-----hHHHHHHHhcCCHHHH
Q psy12594        225 VKADAFLCLADIAKDSPSLA-STIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHN-----LRLANLVVLAGGLDGL  297 (542)
Q Consensus       225 ~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~-----~~~~~~~~~~~~i~~L  297 (542)
                      +|..++|+++.++....... ..-.-..+++ ++..+.++ +.++..++++|.+++...     ......+  ...++.|
T Consensus       427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L  503 (861)
T 2bpt_A          427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGL  503 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHH
Confidence            99999999999986422100 0011236778 88888776 899999999999987531     1111111  2456778


Q ss_pred             HHhhhcCC--ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC--------------ChhhHHHHHHHHHHH
Q psy12594        298 LRLIDCNG--GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP--------------HKEQLQVAAAWTLGQ  361 (542)
Q Consensus       298 v~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--------------~~~~v~~~a~~~L~~  361 (542)
                      +..+.+.+  +.++..++.+++.++...+........ .+++.++..+...              ....++..++.+|++
T Consensus       504 ~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~  582 (861)
T 2bpt_A          504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA  582 (861)
T ss_dssp             HHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence            88887644  678999999999998755443333333 4566666665421              124578889999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhhCC---------CchhhHHhhcCCCCHHHHHH
Q psy12594        362 IGKHSVDNVTALCEENVLSTLLSKITQTCVSD-NLKSKCKNALNILIPKCE---------NPKELEQMLLGNVSEELLAS  431 (542)
Q Consensus       362 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~-~v~~~a~~aL~nl~~~~~---------~i~~L~~lL~~~~~~~v~~~  431 (542)
                      ++..-+.......+ .+++.++..+.+..  . .+|..+.+++++++...+         .++.|...++ +.+++++..
T Consensus       583 l~~~~~~~~~~~~~-~l~~~l~~~l~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~vr~~  658 (861)
T 2bpt_A          583 VIRKSPSSVEPVAD-MLMGLFFRLLEKKD--SAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSIT  658 (861)
T ss_dssp             HHHHCGGGTGGGHH-HHHHHHHHHHHSTT--GGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-CTTSHHHHH
T ss_pred             HHHHhhhhhHHHHH-HHHHHHHHHHccCC--CCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccHHHHHH
Confidence            87655432222222 46778888888763  4 799999999999875422         2466666777 777788888


Q ss_pred             HHHHHHhhCCCC
Q psy12594        432 ILCAFAKILPCD  443 (542)
Q Consensus       432 ~l~~l~~ll~~~  443 (542)
                      ++..+..+....
T Consensus       659 a~~~l~~l~~~~  670 (861)
T 2bpt_A          659 AVGFIADISNSL  670 (861)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            888888776543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.64  E-value=6.8e-14  Score=154.31  Aligned_cols=385  Identities=14%  Similarity=0.117  Sum_probs=262.5

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCChH-HHHHHHhcCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCh-hh-
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVD-IRQEVLERNLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDE-RC-  118 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~-~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~-~~-  118 (542)
                      -+.|+..+.++++.+|..++.++..++....+. .     ..+.++.|+..+.++ ++.++..++.++..++..-. +. 
T Consensus        97 k~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~-----w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~  171 (861)
T 2bpt_A           97 KTNALTALVSIEPRIANAAAQLIAAIADIELPHGA-----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC-----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             HHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh
Confidence            345677778888999999999999998322121 1     234677888888887 89999999999999986421 21 


Q ss_pred             -hhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594        119 -AGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFA-ERIVQCGALPPLVQILASPQLSLKHAAAFALDGI  194 (542)
Q Consensus       119 -~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl  194 (542)
                       ..-....+++.+...+.++  ++.+|..++.++..+...-.... .......+++.+...+.++++.+|..++.+|..+
T Consensus       172 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l  251 (861)
T 2bpt_A          172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence             0111223667778888887  79999999999998753222110 0000112467777888888999999999999999


Q ss_pred             hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-----------------hHHHHHhhchHH-HH
Q psy12594        195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS-----------------LASTIADGATTL-AV  256 (542)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~~~~~~~i~-L~  256 (542)
                      +...++.....+...+++.+...+.+.+++++..++.++..++.....                 ...... ..+++ ++
T Consensus       252 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll  330 (861)
T 2bpt_A          252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLL  330 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHH
Confidence            875443333333225667788888888999999999999998865211                 111111 46778 88


Q ss_pred             HhhcCC-------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh-HHHH
Q psy12594        257 EHLTYP-------HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE-QIAE  328 (542)
Q Consensus       257 ~lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~  328 (542)
                      ..+...       +..++..+..+|..++...++.   +. ...++.+...+.+.++.++..|+.+++.++.+.. +...
T Consensus       331 ~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~  406 (861)
T 2bpt_A          331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRT  406 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred             HHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHH
Confidence            888753       2468899999999988543211   11 2356677777888889999999999999997753 4333


Q ss_pred             HHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        329 QIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNV-TALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       329 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      ..+. .+++.|+..+.++ ++.+|..++|++++++..-.... ..-.-..+++.++..+.++   +.+|..|+|+|.+++
T Consensus       407 ~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~  481 (861)
T 2bpt_A          407 YYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLV  481 (861)
T ss_dssp             HHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHH
Confidence            3343 5788889998875 56899999999999975321100 0000113567888888653   689999999999998


Q ss_pred             hhCC---------C----chhhHHhhcCCCC--HHHHHHHHHHHHhhCCCC
Q psy12594        408 PKCE---------N----PKELEQMLLGNVS--EELLASILCAFAKILPCD  443 (542)
Q Consensus       408 ~~~~---------~----i~~L~~lL~~~~~--~~v~~~~l~~l~~ll~~~  443 (542)
                      ..++         +    ++.|..++. ..|  +.++..++.++..+....
T Consensus       482 ~~~~~~~~~~l~~~~~~il~~L~~~l~-~~d~~~~vr~~a~~al~~l~~~~  531 (861)
T 2bpt_A          482 EQLAEATPSPIYNFYPALVDGLIGAAN-RIDNEFNARASAFSALTTMVEYA  531 (861)
T ss_dssp             HHHSSSSSCGGGGGHHHHHHHHHHHHT-CSCCGGGHHHHHHHHHHHHHHHC
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHHh-CcCcchHHHHHHHHHHHHHHHHc
Confidence            7542         1    344555665 433  678877777777766544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.62  E-value=2.7e-14  Score=157.80  Aligned_cols=380  Identities=16%  Similarity=0.126  Sum_probs=261.4

Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCC-hhhhhHh
Q psy12594         46 IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ--NKHYKKTALHMLTCVAQQD-ERCAGLI  122 (542)
Q Consensus        46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~  122 (542)
                      ++..+.++++.+ ..++.++..++....+.  .  .....++.++..+.++  ++.++..++.+|..++... ++...-.
T Consensus        95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~--~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~  169 (876)
T 1qgr_A           95 VLHTLGTETYRP-SSASQCVAGIACAEIPV--N--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK  169 (876)
T ss_dssp             HHHHTTTCCSSS-CHHHHHHHHHHHHHGGG--T--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG
T ss_pred             HHHHhCCCcHHH-HHHHHHHHHHHHhhCcc--c--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH
Confidence            667777777777 88888888888221110  0  1346788889999888  8999999999999988542 2221112


Q ss_pred             hcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594        123 EDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFA-ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP  199 (542)
Q Consensus       123 ~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~  199 (542)
                      -..+++.+...+.++  ++.+|..++.++..+....+... .......+++.+...+.+++.+++..++.+|..++...+
T Consensus       170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~  249 (876)
T 1qgr_A          170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  249 (876)
T ss_dssp             HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence            234677888888877  68999999999999875322211 111111257778888888889999999999999998666


Q ss_pred             HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh---------------------hHHHHHhhchHH-HHH
Q psy12594        200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS---------------------LASTIADGATTL-AVE  257 (542)
Q Consensus       200 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------------------~~~~~~~~~~i~-L~~  257 (542)
                      +.....+...+++.+...+.+.++.++..+++.+..++.....                     ..... -..+++ ++.
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~ll~  328 (876)
T 1qgr_A          250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQ  328 (876)
T ss_dssp             GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH-HHHHhHHHHH
Confidence            5544455447888888888888999999999999988764210                     01101 135677 777


Q ss_pred             hhcC-------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh-HHHHH
Q psy12594        258 HLTY-------PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE-QIAEQ  329 (542)
Q Consensus       258 lL~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~  329 (542)
                      .+..       .+..+|..+..+|..++...++.   +. ..+++.+...+.++++.++..|+++++.++.+.. +....
T Consensus       329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~  404 (876)
T 1qgr_A          329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP  404 (876)
T ss_dssp             HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred             HhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            7753       24578999999999987543321   11 2456677788888899999999999999988654 33333


Q ss_pred             HHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHH--HHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNV--TALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       330 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      .. ..+++.++..+.++ +..+|..|+|++++++...+...  ... -..+++.++..+.++   +.+|..|+|+|.+++
T Consensus       405 ~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~  478 (876)
T 1qgr_A          405 LV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE---PRVASNVCWAFSSLA  478 (876)
T ss_dssp             HH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC---HHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence            33 35888999999874 46899999999999986543311  001 124667788888763   689999999999998


Q ss_pred             hhCC-------------------C----chhhHHhhcCCC---CHHHHHHHHHHHHhhCCC
Q psy12594        408 PKCE-------------------N----PKELEQMLLGNV---SEELLASILCAFAKILPC  442 (542)
Q Consensus       408 ~~~~-------------------~----i~~L~~lL~~~~---~~~v~~~~l~~l~~ll~~  442 (542)
                      ..++                   +    ++.|..++. ..   +..++..++.++..+...
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~-~~~~~~~~~r~~~~~~l~~l~~~  538 (876)
T 1qgr_A          479 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD-RPDGHQNNLRSSAYESLMEIVKN  538 (876)
T ss_dssp             HHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTT-SCSSCSTTHHHHHHHHHHHHHHT
T ss_pred             HHhhhccccccccccccchhhhHhHHHHHHHHHHHHh-CcCcchhhHHHHHHHHHHHHHHH
Confidence            6522                   2    244445555 32   335666666666655543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.62  E-value=1.1e-14  Score=148.57  Aligned_cols=375  Identities=13%  Similarity=0.093  Sum_probs=250.2

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC--ChHHHHHHHHHHHHhHccCChHHHHH----H------Hhc
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK--VPSIQHAALATLGKLMCAKHVDIRQE----V------LER   83 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~~----i------~~~   83 (542)
                      .|..+.+.|.++..+       ...+.++.|..++.+.  ++.+|..|+..|+++...........    +      ...
T Consensus        17 ~r~~Ae~~L~~~~~~-------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~   89 (462)
T 1ibr_B           17 ELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR   89 (462)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHH
Confidence            466666666654431       0134556677777654  68999999999999983322111110    0      011


Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCC-hHHH
Q psy12594         84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDN-KHFA  160 (542)
Q Consensus        84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~-~~~~  160 (542)
                      .+-..++..|.++++.+ ..++.++..++.......  .-.+.++.|+..+.++  ++.++..++.+|..++... +...
T Consensus        90 ~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~  166 (462)
T 1ibr_B           90 EVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL  166 (462)
T ss_dssp             HHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence            23345677788777777 888888888875431110  1136789999999988  8999999999999998532 2211


Q ss_pred             HHHHHcCChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594        161 ERIVQCGALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIKALNNDEVNVKADAFLCLADIA  237 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  237 (542)
                      .... ..+++.++.+++++  ++.+|..|++++.++...-.+... .....-.++.+...+.+.+++++..++++|..++
T Consensus       167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~  245 (462)
T 1ibr_B          167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  245 (462)
T ss_dssp             GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            1111 13578889999988  789999999999997653221110 0011113566777778889999999999999999


Q ss_pred             cCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHH-----------------HHH---hcCCHHH
Q psy12594        238 KDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLAN-----------------LVV---LAGGLDG  296 (542)
Q Consensus       238 ~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~-----------------~~~---~~~~i~~  296 (542)
                      ...++.........+++ ++..+.+.++.++..+++.+..++........                 .+.   -...+|.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~  325 (462)
T 1ibr_B          246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (462)
T ss_dssp             HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence            76543222222226788 88888888999999999999988754211000                 000   1235666


Q ss_pred             HHHhhhc-------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh-H
Q psy12594        297 LLRLIDC-------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV-D  368 (542)
Q Consensus       297 Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~  368 (542)
                      ++..+..       .++.++..|..+|+.++...++.   +. ..+++.+...+.+ ++..+|..|+++++.++.+.. +
T Consensus       326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~  400 (462)
T 1ibr_B          326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPS  400 (462)
T ss_dssp             HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTT
T ss_pred             HHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHH
Confidence            6666654       23568999999999998754421   11 2466777788876 457999999999999987643 2


Q ss_pred             HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        369 NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       369 ~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      .....+ ..+++.++..+.++  ++.||..|+|+|+++...
T Consensus       401 ~~~~~l-~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          401 QLKPLV-IQAMPTLIELMKDP--SVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             TTCTTT-TTHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHh
Confidence            111111 46889999999887  579999999999999864

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.61  E-value=2.2e-14  Score=146.33  Aligned_cols=373  Identities=13%  Similarity=0.060  Sum_probs=255.3

Q ss_pred             HhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCChhh------
Q psy12594         47 VPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ--NKHYKKTALHMLTCVAQQDERC------  118 (542)
Q Consensus        47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~------  118 (542)
                      +.-+.+.|+.+|..|-..|..+.  ...       ..+.+..|+.++.+.  ++.+|..|+..|.++.......      
T Consensus         7 L~~~~s~d~~~r~~Ae~~L~~~~--~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~   77 (462)
T 1ibr_B            7 LEKTVSPDRLELEAAQKFLERAA--VEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   77 (462)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHH--hhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence            33345789999999999999977  210       123556677777654  6899999999999986442100      


Q ss_pred             ------hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhccCC--CHhHHHHHHH
Q psy12594        119 ------AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN-KHFAERIVQCGALPPLVQILASP--QLSLKHAAAF  189 (542)
Q Consensus       119 ------~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~  189 (542)
                            ..-....+-..++..+.++++.+ ..++.+++.++... +. .   .-.++++.|++.+.++  ++.++..++.
T Consensus        78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~---~w~~ll~~L~~~l~~~~~~~~~r~~al~  152 (462)
T 1ibr_B           78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N---QWPELIPQLVANVTNPNSTEHMKESTLE  152 (462)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T---CCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c---ccHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence                  00011123456777888887777 88889999988532 11 0   0125688999999988  8999999999


Q ss_pred             HHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHH-HHHhhchHH-HHHhhcCCCh
Q psy12594        190 ALDGIVKHS-PELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLAS-TIADGATTL-AVEHLTYPHG  264 (542)
Q Consensus       190 ~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~-L~~lL~~~~~  264 (542)
                      +|+.++... ++...... ..+++.+...+.+.  ++.+|..+++++.++...-.+... ......+++ +...+.+.++
T Consensus       153 ~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  231 (462)
T 1ibr_B          153 AIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT  231 (462)
T ss_dssp             HHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence            999999743 22211111 23568888888877  799999999999998654221111 111122567 7777788899


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChH-------------------
Q psy12594        265 LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQ-------------------  325 (542)
Q Consensus       265 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-------------------  325 (542)
                      .++..++++|..++...+..........+++.++..+++.++.++..++..+..++.....                   
T Consensus       232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (462)
T 1ibr_B          232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS  311 (462)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence            9999999999999876544321111115677777888888889999999998888753210                   


Q ss_pred             --HHHHHHhhCchHHHHHhhcCC------ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHH
Q psy12594        326 --IAEQIIELQGVGSLQTILQCP------HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKS  397 (542)
Q Consensus       326 --~~~~~~~~~~l~~L~~ll~~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~  397 (542)
                        ...... ..+++.++..+...      .+..+|..|+.+|..++...++.   ++ ..+++.+...+.++  +..+|.
T Consensus       312 ~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~--~~~~r~  384 (462)
T 1ibr_B          312 KFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNP--DWRYRD  384 (462)
T ss_dssp             CCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCS--SHHHHH
T ss_pred             HHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC--ChHHHH
Confidence              111111 24667777777542      12468999999999987654421   11 23567777788766  569999


Q ss_pred             HHHHHHHHHHhhCC----------CchhhHHhhcCCCCHHHHHHHHHHHHhhCCC
Q psy12594        398 KCKNALNILIPKCE----------NPKELEQMLLGNVSEELLASILCAFAKILPC  442 (542)
Q Consensus       398 ~a~~aL~nl~~~~~----------~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~  442 (542)
                      .|+++|+.+...+.          .++.+..+|. +.++.++..++++|.++...
T Consensus       385 aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence            99999999975432          3567888888 88899999999999988543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.59  E-value=4.1e-13  Score=148.34  Aligned_cols=404  Identities=13%  Similarity=0.084  Sum_probs=270.0

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcC--CChHHHHHHHHHHHHhHccCChH----HHHHHH------hc
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD--KVPSIQHAALATLGKLMCAKHVD----IRQEVL------ER   83 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~----~~~~i~------~~   83 (542)
                      .|+.+.+.|.++..+       ...+.++.|+..+.+  .++.+|..|+..|++.....++.    ....+.      ..
T Consensus        17 ~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~   89 (876)
T 1qgr_A           17 ELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR   89 (876)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHH
Confidence            466677766664431       114667778888866  46899999999999976222111    111111      11


Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCC-hHHH
Q psy12594         84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDN-KHFA  160 (542)
Q Consensus        84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~-~~~~  160 (542)
                      .+-+.+++.|.++++.+ ..++.++..++.....  .-.-..+++.++..+.++  ++.+|..++.+|..++... ++..
T Consensus        90 ~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~  166 (876)
T 1qgr_A           90 EVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL  166 (876)
T ss_dssp             HHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhH
Confidence            12234777787777777 8888888888754211  001135788899999988  8999999999999998532 2210


Q ss_pred             HHHHHcCChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594        161 ERIVQCGALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIKALNNDEVNVKADAFLCLADIA  237 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  237 (542)
                      .. .-..+++.+.+.+.++  +..+|..++.+|.+++..-..... ......+++.+...+.+.+.+++..++++|..++
T Consensus       167 ~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~  245 (876)
T 1qgr_A          167 QD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  245 (876)
T ss_dssp             GG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             Hh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            10 0123467788888877  688999999999998864322110 1111124677777888889999999999999999


Q ss_pred             cCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH---------------------HHHHHHhcCCHH
Q psy12594        238 KDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR---------------------LANLVVLAGGLD  295 (542)
Q Consensus       238 ~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~---------------------~~~~~~~~~~i~  295 (542)
                      ...++.........+++ ++..+.+.++.++..+++.+..++.....                     ..+... ...++
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~  324 (876)
T 1qgr_A          246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVP  324 (876)
T ss_dssp             HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhH
Confidence            86654433333347788 88888888999999999999988754211                     000000 23466


Q ss_pred             HHHHhhhc-------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh-
Q psy12594        296 GLLRLIDC-------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV-  367 (542)
Q Consensus       296 ~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-  367 (542)
                      .++..+..       .++.++..|..+++.++...++.   ++ ..+++.+...+.+ ++..+|..|+++++.++.+.. 
T Consensus       325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~  399 (876)
T 1qgr_A          325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEP  399 (876)
T ss_dssp             HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCH
T ss_pred             HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccC-CChHHHHHHHHHHHHHHcCCCH
Confidence            67777753       35678999999999887643321   11 2456667777776 457899999999999987654 


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------CC----chhhHHhhcCCCCHHHHHHHHHHH
Q psy12594        368 DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------EN----PKELEQMLLGNVSEELLASILCAF  436 (542)
Q Consensus       368 ~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------~~----i~~L~~lL~~~~~~~v~~~~l~~l  436 (542)
                      +...... ..+++.++..+.++  ++.||..|+|+|+++....       ..    ++.|...+. + ++.+...+++++
T Consensus       400 ~~~~~~~-~~~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~-~~~v~~~a~~al  474 (876)
T 1qgr_A          400 SQLKPLV-IQAMPTLIELMKDP--SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-A-EPRVASNVCWAF  474 (876)
T ss_dssp             HHHHHHH-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-S-CHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHH
Confidence            3333332 34889999999876  5799999999999998652       22    355566666 5 478888888888


Q ss_pred             HhhCC
Q psy12594        437 AKILP  441 (542)
Q Consensus       437 ~~ll~  441 (542)
                      .++..
T Consensus       475 ~~l~~  479 (876)
T 1qgr_A          475 SSLAE  479 (876)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.57  E-value=1.1e-13  Score=125.21  Aligned_cols=188  Identities=26%  Similarity=0.333  Sum_probs=161.1

Q ss_pred             hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594         39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      +.+.++.|+.+|+++++.+|..|+..|..+.            ....++.|+..|.++++.++..++.+|+.+..     
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            3567899999999999999999999999988            34678999999999999999999999999863     


Q ss_pred             hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                           .+.++.|+.+|+++++.+|..++++|+.+..           ...++.|+.++.++++.++..++++|+++..  
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 2478999999999999999999999999864           1358899999999999999999999999864  


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                               ...++.|..++.++++.++..++++|..+..           ...++ |..++.++++.++..|..+|.++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     3467899999999999999999999999843           25677 88999999999999999999988


Q ss_pred             hcCC
Q psy12594        278 CKHN  281 (542)
Q Consensus       278 ~~~~  281 (542)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            7544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.54  E-value=2.3e-13  Score=122.08  Aligned_cols=184  Identities=26%  Similarity=0.331  Sum_probs=160.3

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      .+..+.++.+|+++++.+|..|+..|..+.            ..+.++.|++.|.++++.++..++.+|+.+...     
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-----   75 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG------------DERAVEPLIKALKDEDAWVRRAAADALGQIGDE-----   75 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcC------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-----
Confidence            466788999999999999999999999988            346789999999999999999999999988532     


Q ss_pred             hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594        120 GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP  199 (542)
Q Consensus       120 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~  199 (542)
                           ..++.|+.+|.++++.+|..|+++|+.+..  +         ..++.|+.++.++++.+|..|+++|+++..   
T Consensus        76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                 478999999999999999999999999854  1         358889999999999999999999999864   


Q ss_pred             HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594        200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC  278 (542)
Q Consensus       200 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~  278 (542)
                              ...++.|..++.++++.+|..++++|+.+..           ...++ |..++.++++.++..+..+|..+.
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                    3567899999999999999999999999832           24677 888999999999999999998764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.52  E-value=1.3e-11  Score=129.42  Aligned_cols=401  Identities=12%  Similarity=0.087  Sum_probs=272.0

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      .+.+..++++.+++...+..+..++..++  .. ++....     .++.+.+-|.++++.++..|+.+++++..  ++..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~--~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLV--NSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSC--CCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHc--cCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH
Confidence            45677788999999999999999999999  55 443222     35567777889999999999999999853  3333


Q ss_pred             hHhhcCChHHHHhhh--cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        120 GLIEDKDLDSIISSL--HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       120 ~~~~~g~v~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      .    .+++.+.+++  .+.++.+|..|+.++.++...+|+...   ..+.++.+.++|.+.++.++..|+.+|..++..
T Consensus       145 ~----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          145 E----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             H----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence            3    3567888899  888999999999999999976655322   147899999999999999999999999999987


Q ss_pred             CHHHHHHhhhCCChHHHHHhhcCC-------------CHHHHHHHHHHHHHHhcC-ChhhHHHHHhhchHH-HHHhh---
Q psy12594        198 SPELAESASDCDVIPLLIKALNND-------------EVNVKADAFLCLADIAKD-SPSLASTIADGATTL-AVEHL---  259 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~~-------------~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~-L~~lL---  259 (542)
                      +++.....+ ...+..|.+++...             ++-.+...+..|..++.. +++..+.+.  ..++ ++..+   
T Consensus       218 ~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~  294 (621)
T 2vgl_A          218 NPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEP  294 (621)
T ss_dssp             CHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSC
T ss_pred             ChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccC
Confidence            665321111 11223333443321             567888888888888764 333443332  2444 44332   


Q ss_pred             ------cCCC--hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594        260 ------TYPH--GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII  331 (542)
Q Consensus       260 ------~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  331 (542)
                            ++.+  ..|...++.++..+. ..++...     .++..|..++.+.++.++..|+..|..++...+.. ..+ 
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~~-  366 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-EAV-  366 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HHH-
T ss_pred             cccccccccchHHHHHHHHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-HHH-
Confidence                  2223  378888999998886 3333222     35668889999899999999999999998765421 122 


Q ss_pred             hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594        332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE  411 (542)
Q Consensus       332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~  411 (542)
                       ......++..+...++..++..++.+|..++  ++.+...+     +..|...+.+.  +.+++.+++.+++.+..+..
T Consensus       367 -~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~--~~~Nv~~I-----v~eL~~yl~~~--d~~~~~~~v~~I~~la~k~~  436 (621)
T 2vgl_A          367 -KTHIETVINALKTERDVSVRQRAVDLLYAMC--DRSNAQQI-----VAEMLSYLETA--DYSIREEIVLKVAILAEKYA  436 (621)
T ss_dssp             -HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC--CHHHHHHH-----HHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc--ChhhHHHH-----HHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcC
Confidence             2456777888872356789999999999995  44444443     45566677665  56999999999999976521


Q ss_pred             -----CchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcCCC-CcHHHHHHHHhccCc
Q psy12594        412 -----NPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPT-PEIAPHLKTINACFP  480 (542)
Q Consensus       412 -----~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~~~-~~~~~a~~~l~~~~~  480 (542)
                           ++..|.+++. .....+...+...+..++...+..++..... .++.+.+-... .-++.+.|+|+.|.+
T Consensus       437 ~~~~~~v~~Ll~ll~-~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~-l~~~l~~~~~~~~li~~~~wilGEy~~  509 (621)
T 2vgl_A          437 VDYTWYVDTILNLIR-IAGDYVSEEVWYRVIQIVINRDDVQGYAAKT-VFEALQAPACHENLVKVGGYILGEFGN  509 (621)
T ss_dssp             SSTHHHHHHHHHHHH-HHGGGSCSHHHHHHHHHHGGGCSCHHHHHHH-HHHHHTSSSCCHHHHHHHHHHHHHHTH
T ss_pred             CcHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHhCChhHHHHHHHH-HHHHHcCccchHHHHHHHHHHhcchHH
Confidence                 3677888887 5444455556666666655555544443321 11122211111 123456789988854

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.51  E-value=5.6e-13  Score=120.51  Aligned_cols=189  Identities=23%  Similarity=0.294  Sum_probs=159.2

Q ss_pred             hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12594         82 ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE  161 (542)
Q Consensus        82 ~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (542)
                      ..+.++.|+..|.++++.+|..++..|..+..          .++++.|++++.++++.+|..++++|+.+..       
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            34578999999999999999999999998763          2478999999999999999999999998863       


Q ss_pred             HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594        162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP  241 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  241 (542)
                          .+.++.|+.+++++++.+|..++++|+++..           ...++.|..++.++++.++..++++|+++..   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                2358899999999999999999999999865           3567899999999999999999999999843   


Q ss_pred             hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        242 SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       242 ~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                              ...++ |..++.++++.++..++++|..+..           ...++.|..++.++++.++..|..+|+++.
T Consensus       142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  202 (211)
T 3ltm_A          142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  202 (211)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence                    14677 9999999999999999999999853           345677889999999999999999999886


Q ss_pred             cCCh
Q psy12594        321 AQSE  324 (542)
Q Consensus       321 ~~~~  324 (542)
                      ....
T Consensus       203 ~~~~  206 (211)
T 3ltm_A          203 SFNH  206 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            6543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.50  E-value=1.7e-12  Score=148.35  Aligned_cols=412  Identities=11%  Similarity=0.090  Sum_probs=273.1

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHH----HHHHHhcCcHHHHH
Q psy12594         15 RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDI----RQEVLERNLVALVL   90 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~----~~~i~~~~~l~~Lv   90 (542)
                      +.|..++.+|..++..-.. ..+  ..+++.|+..+.++++.+|..|+.+|..++....+..    ...-.....+|.|+
T Consensus        63 ~vR~~A~~~L~~l~~~~~~-~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~  139 (1230)
T 1u6g_C           63 EVQNLAVKCLGPLVSKVKE-YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT  139 (1230)
T ss_dssp             HHHHHHHHHHHHHHTTSCH-HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCH-HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHH
Confidence            4566777777777653211 111  3467778888888889999999999999983333320    00111335788999


Q ss_pred             Hhhc-cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q psy12594         91 KDLT-KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGAL  169 (542)
Q Consensus        91 ~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i  169 (542)
                      ..+. ++++.++..++.+|..++...+....-.....++.++..+.++++.+|..|+.+|..++...+.   .+ -..++
T Consensus       140 ~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l  215 (1230)
T 1u6g_C          140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLI  215 (1230)
T ss_dssp             HHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHH
T ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHH
Confidence            9998 5889999999999999884321111111134678888999999999999999999999864432   11 12347


Q ss_pred             HHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy12594        170 PPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA  248 (542)
Q Consensus       170 ~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  248 (542)
                      +.++..+.+.+ ..++..++.+++.++...+....... ..+++.+...+.+.++++|+.+++++..++...++......
T Consensus       216 ~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l  294 (1230)
T 1u6g_C          216 EHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV  294 (1230)
T ss_dssp             HHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH
T ss_pred             HHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH
Confidence            77887776543 46778888999988874433221112 46789999999988999999999999999876442211111


Q ss_pred             hhchHH-HHHhhcCC-------------------------------------ChhHHHHHHHHHHHHhcCChHHHHHHHh
Q psy12594        249 DGATTL-AVEHLTYP-------------------------------------HGLVQKNAATLLRDMCKHNLRLANLVVL  290 (542)
Q Consensus       249 ~~~~i~-L~~lL~~~-------------------------------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~  290 (542)
                       ..+++ ++..+..+                                     ...+|..++.++..++...++...... 
T Consensus       295 -~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-  372 (1230)
T 1u6g_C          295 -STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-  372 (1230)
T ss_dssp             -HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-
T ss_pred             -HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-
Confidence             34556 65555310                                     124688899999998875543222222 


Q ss_pred             cCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC-------------------hHHHHHHHhhCchHHHHHhhcCCChhhH
Q psy12594        291 AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS-------------------EQIAEQIIELQGVGSLQTILQCPHKEQL  351 (542)
Q Consensus       291 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-------------------~~~~~~~~~~~~l~~L~~ll~~~~~~~v  351 (542)
                      ...++.++..+.+.++.++..++.++..+....                   ......++ ..+++.+...+.++ ++.+
T Consensus       373 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~-~~~v  450 (1230)
T 1u6g_C          373 KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEK-SVKT  450 (1230)
T ss_dssp             TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCS-CHHH
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccC-CHHH
Confidence            467888888888888899999999888776421                   01111122 24666677778874 4588


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC----------CCchhhHHhhc
Q psy12594        352 QVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC----------ENPKELEQMLL  421 (542)
Q Consensus       352 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~----------~~i~~L~~lL~  421 (542)
                      |..++.+++.++...+...... -..+++.++..|.++.+..+++..++.++..++...          ..++.|...+.
T Consensus       451 r~~~~~~L~~l~~~~~~~l~~~-l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~  529 (1230)
T 1u6g_C          451 RQCCFNMLTELVNVLPGALTQH-IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVG  529 (1230)
T ss_dssp             HHHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHchhhhHHH-HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHc
Confidence            9999999998876533221111 124678888999887544589999999999886432          23566667777


Q ss_pred             CCCCHHHHHHHHHHHHhhC
Q psy12594        422 GNVSEELLASILCAFAKIL  440 (542)
Q Consensus       422 ~~~~~~v~~~~l~~l~~ll  440 (542)
                       +.+..++..+++++..++
T Consensus       530 -d~~~~v~~~al~~l~~l~  547 (1230)
T 1u6g_C          530 -DPFYKITSEALLVTQQLV  547 (1230)
T ss_dssp             -CSSHHHHHHHHHHHHHHH
T ss_pred             -ccchHHHHHHHHHHHHHH
Confidence             777777777777766554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.50  E-value=8e-13  Score=118.45  Aligned_cols=183  Identities=23%  Similarity=0.309  Sum_probs=158.0

Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594         84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI  163 (542)
Q Consensus        84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  163 (542)
                      +..+.+++.|.++++.+|..++..|..+..          .+.++.|+++|.++++.+|..++++|+.+..  +      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~------   75 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E------   75 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H------
Confidence            467889999999999999999999998763          2478999999999999999999999998853  1      


Q ss_pred             HHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q psy12594        164 VQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL  243 (542)
Q Consensus       164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  243 (542)
                         ..++.|+.++.++++.+|..|+++|+++..           ...++.|..++.++++.+|..++++|+.+..     
T Consensus        76 ---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  136 (201)
T 3ltj_A           76 ---RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  136 (201)
T ss_dssp             ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred             ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence               358899999999999999999999999865           3467889999999999999999999999853     


Q ss_pred             HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                            ...++ |..++.++++.++..++++|..+..           ...++.|..++.++++.++..|..+|+.+.
T Consensus       137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                  25678 9999999999999999999999842           235677888999999999999999998763

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.48  E-value=6.1e-13  Score=152.13  Aligned_cols=384  Identities=11%  Similarity=0.109  Sum_probs=257.5

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHH-HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDI-RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~-~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      ++.|+.-+.+.|+.+|..|...|.+..  ..+.. ...-.....++.+++.|.++++.+|..|+.+|..++...++. .+
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l--~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~   84 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTEL--QKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QV   84 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHT--SSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHH--cccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HH
Confidence            556666678999999999999888876  32100 000001235678888898999999999999999998654331 11


Q ss_pred             hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHH------HHHHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHH
Q psy12594        122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF------AERIVQCGALPPLVQILA-SPQLSLKHAAAFALDGI  194 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~------~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl  194 (542)
                        ..+++.++..+.++++.+|..++.+|..++......      .... -..++|.|+..+. ++++.++..|+.+|..+
T Consensus        85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence              135678888888888999999999999988433221      1111 1245899999998 47899999999999999


Q ss_pred             hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHH
Q psy12594        195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAAT  272 (542)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~  272 (542)
                      +...+....... ...++.+...+.++++.+|..++.++..++...++.   + -..+++ ++..|... +..++..++.
T Consensus       162 ~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          162 LSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence            853221111111 234577777888889999999999999999765421   1 234677 77777655 4567888899


Q ss_pred             HHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC------
Q psy12594        273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP------  346 (542)
Q Consensus       273 ~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------  346 (542)
                      ++..++...+..... .-...++.++..+.+.++.+|..++.+++.++...++...... ..+++.++..+...      
T Consensus       237 ~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~  314 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYD  314 (1230)
T ss_dssp             HHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCc
Confidence            999887654332110 1136788999999988999999999999998875443211121 13444444443210      


Q ss_pred             ------------------------------ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHH
Q psy12594        347 ------------------------------HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLK  396 (542)
Q Consensus       347 ------------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~  396 (542)
                                                    ....+|..|+.++..++...++....++ ..+++.++..+.+.  ++++|
T Consensus       315 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~--~~~Vr  391 (1230)
T 1u6g_C          315 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER--EENVK  391 (1230)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS--SSHHH
T ss_pred             ccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC--chHHH
Confidence                                          0134688999999998765544333333 35778888877665  46899


Q ss_pred             HHHHHHHHHHHhhCC------------------------Cch----hhHHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594        397 SKCKNALNILIPKCE------------------------NPK----ELEQMLLGNVSEELLASILCAFAKILPCD  443 (542)
Q Consensus       397 ~~a~~aL~nl~~~~~------------------------~i~----~L~~lL~~~~~~~v~~~~l~~l~~ll~~~  443 (542)
                      ..+..++..++...+                        .++    .+...++ +.++.++..++.++..++...
T Consensus       392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~~  465 (1230)
T 1u6g_C          392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVL  465 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHc
Confidence            999999888865321                        233    3444477 788888888888887776543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.47  E-value=7e-12  Score=131.51  Aligned_cols=390  Identities=13%  Similarity=0.071  Sum_probs=265.0

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhh--cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLL--ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL   93 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L   93 (542)
                      .|..++++++++.. ++..     ...+|.+.+++  .+.+|.+|..|+.++.++.. .+++...   ..++++.+.++|
T Consensus       127 ir~lALr~L~~i~~-~e~~-----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~---~~~~~~~l~~lL  196 (621)
T 2vgl_A          127 FMGLALHCIANVGS-REMA-----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVP---MGDWTSRVVHLL  196 (621)
T ss_dssp             HHHHHHHHHHHHCC-HHHH-----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCC---CCSCHHHHHHHT
T ss_pred             HHHHHHHHhhccCC-HHHH-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcC---chhHHHHHHHHh
Confidence            36678888888854 2222     25667888888  88899999999999999992 1233311   247899999999


Q ss_pred             ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-------------CHHHHHHHHHHHHHhhcC-ChHH
Q psy12594         94 TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-------------DPDTRANAALALGGLAKD-NKHF  159 (542)
Q Consensus        94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-------------~~~~~~~a~~~L~~l~~~-~~~~  159 (542)
                      .+.++.++..|+.++..++..++..-...-...+..|-+++...             ++..+...+..|..++.. ++..
T Consensus       197 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~  276 (621)
T 2vgl_A          197 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV  276 (621)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH
Confidence            99999999999999999987665432201111223333333221             688998888888888753 4555


Q ss_pred             HHHHHHcCChHHHHHhcc---------CCC--HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHH
Q psy12594        160 AERIVQCGALPPLVQILA---------SPQ--LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKAD  228 (542)
Q Consensus       160 ~~~i~~~g~i~~L~~ll~---------~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~  228 (542)
                      ++.+.+  .++.++..+.         +.+  ..+...|+.++..+.. .++....     ++..|..++.+++++++..
T Consensus       277 ~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~~-----~~~~L~~~L~~~~~niry~  348 (621)
T 2vgl_A          277 RGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLVR-----ACNQLGQFLQHRETNLRYL  348 (621)
T ss_dssp             HHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHH-----HHHHHHHHSSCSCHHHHHH
T ss_pred             HHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHHH-----HHHHHHHHhcCCCcchHHH
Confidence            555443  2344443321         112  3788889999988864 4544443     3478889998899999999


Q ss_pred             HHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc
Q psy12594        229 AFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG  306 (542)
Q Consensus       229 a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~  306 (542)
                      ++..|..++...+. ...+  ..... ++.+|. ++|..++..++.+|..++.  +.+.+     .++..|..++...+.
T Consensus       349 aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~-----~Iv~eL~~yl~~~d~  418 (621)
T 2vgl_A          349 ALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQ-----QIVAEMLSYLETADY  418 (621)
T ss_dssp             HHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHH-----HHHHHHHHHHHhcCH
Confidence            99999999987642 2222  23456 888888 8899999999999999984  33333     345578888888899


Q ss_pred             cchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHH
Q psy12594        307 YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKI  386 (542)
Q Consensus       307 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll  386 (542)
                      ..+..++..++.++...+...     ...+..|++++....+ .+..++...+..+....++.+...     +..++..+
T Consensus       419 ~~~~~~v~~I~~la~k~~~~~-----~~~v~~Ll~ll~~~~~-~v~~ev~~~l~~ii~~~~~~~~~~-----~~~l~~~l  487 (621)
T 2vgl_A          419 SIREEIVLKVAILAEKYAVDY-----TWYVDTILNLIRIAGD-YVSEEVWYRVIQIVINRDDVQGYA-----AKTVFEAL  487 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHCSST-----HHHHHHHHHHHHHHGG-GSCSHHHHHHHHHHGGGCSCHHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHHHhhcc-cchHHHHHHHHHHHhCChhHHHHH-----HHHHHHHH
Confidence            999999999998874211111     1346677777776433 455666667777766655544433     45678888


Q ss_pred             hcCCCChHHHHHHHHHHHHHHhh---CCC------chhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594        387 TQTCVSDNLKSKCKNALNILIPK---CEN------PKELEQMLLGNVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       387 ~~~~~~~~v~~~a~~aL~nl~~~---~~~------i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                      .++.....+-..++|.|+.....   .+.      +..+..-+. ..++.+...++.++.++....+.
T Consensus       488 ~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~-~~~~~v~~~~Lta~~Kl~~~~p~  554 (621)
T 2vgl_A          488 QAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH-LCSVPTRALLLSTYIKFVNLFPE  554 (621)
T ss_dssp             TSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCGG
T ss_pred             cCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHChH
Confidence            87765556777888999998543   221      223333334 66788999999999888655544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.20  E-value=2.4e-10  Score=121.45  Aligned_cols=193  Identities=13%  Similarity=0.159  Sum_probs=154.6

Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH-HHhccCCCHhHHHHHHHHHHHHhcC-CHHHHH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPL-VQILASPQLSLKHAAAFALDGIVKH-SPELAE  203 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~ll~~~~~~~~~~a~~~L~nl~~~-~~~~~~  203 (542)
                      .+.++++.|+++++..|..|+++|.+++. ++..++.+...++|..+ ..+|.+++.++|..|+++|+||+.+ +++.+.
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            34456678999999999999999999997 78889999999988765 5578889999999999999999975 578889


Q ss_pred             HhhhCCChHHHHHhhcCC--------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC
Q psy12594        204 SASDCDVIPLLIKALNND--------------E-------VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY  261 (542)
Q Consensus       204 ~~~~~~~i~~L~~ll~~~--------------~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~  261 (542)
                      .++..|+++.|..++...              .       .++...++.+|++||..+.+....+...+.++ |+..|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            999999999999887521              1       23556788999999998877777888888899 8888754


Q ss_pred             C---ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCH---HHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        262 P---HGLVQKNAATLLRDMCKHNLRLANLVVLAGGL---DGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       262 ~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i---~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                      .   ..+++..++.+|..++..++...+.+.+.+..   ..+.. +...+...+..++.+|.|+.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~-~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK-LATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH-HHHSSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH-HhcCCcHHHHHHHHHHHhHh
Confidence            3   47899999999999999999888888776542   23333 33344455777888888864

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.14  E-value=2.5e-10  Score=121.31  Aligned_cols=193  Identities=14%  Similarity=0.114  Sum_probs=152.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-H-HHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHH
Q psy12594        211 IPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-A-VEHLTYPHGLVQKNAATLLRDMCKH-NLRLANL  287 (542)
Q Consensus       211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L-~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~  287 (542)
                      +.++++.|++++++.|..|+++|++|+.+ +..+..+...+++. + ..+|.+++.+|+..|+++|+||+.+ .++....
T Consensus        36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           36 ILPVLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             THHHHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            44466778999999999999999999975 56888888877776 5 5678888999999999999999976 4777777


Q ss_pred             HHhcCCHHHHHHhhhcCCc---------------------cchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594        288 VVLAGGLDGLLRLIDCNGG---------------------YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP  346 (542)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~~---------------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  346 (542)
                      +.+.++++.|..+++....                     .+...++.+|.+|+.++.+....+...+.++.|+..+.+.
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            8899999999998864211                     1334577889999998888888888889999999888543


Q ss_pred             C--hhhHHHHHHHHHHHhhcCChHHHHHHHHcCCh---HHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        347 H--KEQLQVAAAWTLGQIGKHSVDNVTALCEENVL---STLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       347 ~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l---~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      .  ...++..|+.+|..++..+++..+.+.+.+..   ..+..+.++.   ...+..+++.|.|+.
T Consensus       195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~---~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT---DPRAVMACGVLHNVF  257 (684)
T ss_dssp             CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS---CTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC---cHHHHHHHHHHHhHh
Confidence            2  25799999999999999999999988887643   3333333332   356888999999984

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.14  E-value=2.5e-08  Score=82.63  Aligned_cols=213  Identities=15%  Similarity=0.189  Sum_probs=172.8

Q ss_pred             cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhH
Q psy12594        166 CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLA  244 (542)
Q Consensus       166 ~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~  244 (542)
                      ..++..++.+|.++-..++.+|+..+.+++..-++....++     ..|+.+++ +...++......+++.++...|+..
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            34588899999988899999999999999998887776655     56777765 5677888888999999999887655


Q ss_pred             HHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC
Q psy12594        245 STIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS  323 (542)
Q Consensus       245 ~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  323 (542)
                      .     +++| +..-+.-.++.++.+...+|..+.+.+|.....+     +.-+..++.+++..-+..|+..++.+..+.
T Consensus       106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence            5     6788 8888888899999999999999999998876544     457888999988888889999998887766


Q ss_pred             hHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594        324 EQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL  403 (542)
Q Consensus       324 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL  403 (542)
                      ..+..     -.+|.|..+|.+. +.-+|..|..+|++++..++..+..+.      .-+.-+.+.  ++.+++....+|
T Consensus       176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~--S~lv~~~V~egL  241 (253)
T 2db0_A          176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT--SSLVNKTVKEGI  241 (253)
T ss_dssp             HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS--CHHHHHHHHHHH
T ss_pred             ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc--HHHHHHHHHHHH
Confidence            55443     6789999999985 468999999999999999998655443      235556655  678999999888


Q ss_pred             HHHH
Q psy12594        404 NILI  407 (542)
Q Consensus       404 ~nl~  407 (542)
                      +.++
T Consensus       242 ~rl~  245 (253)
T 2db0_A          242 SRLL  245 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.07  E-value=9.3e-08  Score=101.56  Aligned_cols=307  Identities=14%  Similarity=0.093  Sum_probs=211.0

Q ss_pred             CchHHHHhhhc---CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC--------HHHHHHHHHHHH
Q psy12594         41 NVVDLIVPLLA---DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN--------KHYKKTALHMLT  109 (542)
Q Consensus        41 g~i~~L~~lL~---s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~--------~~~~~~a~~~L~  109 (542)
                      +++..|.+.|.   ++++.++..|+.+|+-+......+         .+..|...|.+.+        +.++..|+..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~---------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD---------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH---------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            46777888886   678899999999999998322221         3456666666544        678888888888


Q ss_pred             HHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh--cCChHHHHHHHHcCChHHHHHhc-cCCCHhHHHH
Q psy12594        110 CVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLA--KDNKHFAERIVQCGALPPLVQIL-ASPQLSLKHA  186 (542)
Q Consensus       110 ~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~--~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~  186 (542)
                      -...++.      +..+++.|..++.+.+..++..|+.+|+.+-  ..+...         +..|++.+ .+.+..+++.
T Consensus       463 la~~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---------i~~LL~~~~e~~~e~vrR~  527 (963)
T 4ady_A          463 LAAMGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---------IHDMFTYSQETQHGNITRG  527 (963)
T ss_dssp             HHSTTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---------HHHHHHHHHHCSCHHHHHH
T ss_pred             HHhcCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---------HHHHHHHHhccCcHHHHHH
Confidence            8654431      1135678888888888778888888888763  334333         34444443 3456889999


Q ss_pred             HHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCC
Q psy12594        187 AAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPH  263 (542)
Q Consensus       187 a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~  263 (542)
                      ++.+|+.+..+.++         .++.+++.|. +.++-+|..++.+++.-+....+.       ..++ |++.+. +.+
T Consensus       528 aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~  591 (963)
T 4ady_A          528 LAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSN  591 (963)
T ss_dssp             HHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSC
T ss_pred             HHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCc
Confidence            99999988876554         3455666665 568889999888887554443221       3455 665554 447


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHh-hhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594        264 GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL-IDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI  342 (542)
Q Consensus       264 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  342 (542)
                      ..+|+.|+.+|+.+....+         ..+++++.. .++.++.+|..+..+||.++.+++..       .++..|..+
T Consensus       592 d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L  655 (963)
T 4ady_A          592 DDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPL  655 (963)
T ss_dssp             HHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHH
Confidence            8999999999999876654         345566664 45688889999999999998876642       356666777


Q ss_pred             hcCCChhhHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594        343 LQCPHKEQLQVAAAWTLGQIGKHSVDNVT-ALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL  406 (542)
Q Consensus       343 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl  406 (542)
                      ..+ ++..|+..|+.+|+.+..+..+... .+  ...+..|...+.+...+...+..+..|.+-+
T Consensus       656 ~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          656 TKD-PVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             HTC-SSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             ccC-CCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            766 5679999999999999887554300 00  0123445666654333467888888877765

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.06  E-value=4.9e-09  Score=100.23  Aligned_cols=273  Identities=14%  Similarity=0.070  Sum_probs=168.3

Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV  164 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  164 (542)
                      ++..+++++.+.+..+|+..-.++..++...++.-     =++..|.+-++++++.+|..|+++|+++..  ++..+.+ 
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~l-  140 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-----IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQAI-  140 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHHH-
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHHH-
Confidence            56678899999999999999999988886643322     257889999999999999999999999975  2333332 


Q ss_pred             HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q psy12594        165 QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA  244 (542)
Q Consensus       165 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  244 (542)
                          .+.+.+.+.+.++.+|..|+.+..++....|+..+     ++++.+..++.+.++-++.+|+.+|..+...+.   
T Consensus       141 ----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~---  208 (355)
T 3tjz_B          141 ----ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR---  208 (355)
T ss_dssp             ----HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred             ----HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence                56788889999999999999999999998887543     578999999999999999999999999988653   


Q ss_pred             HHHHhhchHH-HHHhhcCC---ChhHHHHHHHHHHHHhcCC-hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594        245 STIADGATTL-AVEHLTYP---HGLVQKNAATLLRDMCKHN-LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM  319 (542)
Q Consensus       245 ~~~~~~~~i~-L~~lL~~~---~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l  319 (542)
                            ..+. ++..+...   ++..+...+..+..++..+ +..     ....++.+..+|++.++.+...|+++|..+
T Consensus       209 ------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l  277 (355)
T 3tjz_B          209 ------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNL  277 (355)
T ss_dssp             ------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC-
T ss_pred             ------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence                  1334 55555443   5666666666555555444 222     245677888999999999999999999988


Q ss_pred             hcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHH
Q psy12594        320 SAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKC  399 (542)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a  399 (542)
                      ...+...    . ..++..|..++.+ +++.+|..|++.|..+...+|...+.     .-..+.+++.+++  ..+..-|
T Consensus       278 ~~~~~~~----~-~~a~~~L~~fLss-~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n--~sI~t~A  344 (355)
T 3tjz_B          278 PGCSAKE----L-APAVSVLQLFCSS-PKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDAN--RSIATLA  344 (355)
T ss_dssp             ---------------CCCTHHHHHHS-SSSSSHHHHHHCC----------------------------------------
T ss_pred             cCCCHHH----H-HHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCc--HhHHHHH
Confidence            5522221    1 2456667777776 45689999999999998777764321     2244456666653  3444444


Q ss_pred             HH
Q psy12594        400 KN  401 (542)
Q Consensus       400 ~~  401 (542)
                      ..
T Consensus       345 it  346 (355)
T 3tjz_B          345 IT  346 (355)
T ss_dssp             --
T ss_pred             HH
Confidence            33

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.05  E-value=1.4e-07  Score=78.27  Aligned_cols=214  Identities=18%  Similarity=0.223  Sum_probs=173.3

Q ss_pred             hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCh
Q psy12594         39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDE  116 (542)
Q Consensus        39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~  116 (542)
                      +..++..++.+|.++--.+|..|+..+..++  .. ++....+     +..|+.+++ ++.-......+..++.++.-.|
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~--~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P  102 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIA--KTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP  102 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHH--HHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence            4567888899998888899999999999999  66 6665443     446777766 4667777788889999997777


Q ss_pred             hhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594        117 RCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       117 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~  196 (542)
                      +.-.    +.+|.+..-..-+++.++.....+|..++..+|.....+     +.-+..++.+++..-+..|+..++.+..
T Consensus       103 e~v~----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          103 ELVK----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHHH----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHHH----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            6655    457888888888899999999999999999898865554     5567888999998888899999998888


Q ss_pred             CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594        197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR  275 (542)
Q Consensus       197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~  275 (542)
                      ..++..     ...+|.|..+|.+.+.-+|..++.+|.+++..++..+.      ++. .+.-+.+.++.+...+-..|.
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            666544     45669999999999999999999999999999887654      344 667788888899888888888


Q ss_pred             HHhc
Q psy12594        276 DMCK  279 (542)
Q Consensus       276 ~L~~  279 (542)
                      .+..
T Consensus       243 rl~l  246 (253)
T 2db0_A          243 RLLL  246 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.02  E-value=1.1e-08  Score=97.78  Aligned_cols=298  Identities=12%  Similarity=0.068  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc
Q psy12594         17 RLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK   95 (542)
Q Consensus        17 r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~   95 (542)
                      |....+.|+-+...+..-+ ..-....+..++++.++|...+......+..++  .. ++..      =....+.+-+.+
T Consensus        45 ~~~l~kll~l~~~G~~f~~-~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~--~~~~e~i------Lv~Nsl~kDl~~  115 (355)
T 3tjz_B           45 AHILTKILYLINQGEHLGT-TEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMS--CIAEDVI------IVTSSLTKDMTG  115 (355)
T ss_dssp             HHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHT--TTSSCGG------GGHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCCCch-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CCHHHHH------HHHHHHHhhcCC
Confidence            3344455555544432211 111233455678999999999999999998888  44 2221      256677788889


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q psy12594         96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI  175 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  175 (542)
                      +++.+|..|+++|+++...+  ...    .+.+.+.+.+.+.+|.+|..|+.+..++....|+..+     ++++.+-++
T Consensus       116 ~N~~iR~lALRtL~~I~~~~--m~~----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~l  184 (355)
T 3tjz_B          116 KEDSYRGPAVRALCQITDST--MLQ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEA  184 (355)
T ss_dssp             SCHHHHHHHHHHHHHHCCTT--THH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHH
T ss_pred             CcHhHHHHHHHHHhcCCCHH--HHH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHH
Confidence            99999999999999997544  111    3456677888899999999999999999987777432     578899999


Q ss_pred             ccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC---CHHHHHHHHHHHHHHhcCC-hhhHHHHHhhc
Q psy12594        176 LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND---EVNVKADAFLCLADIAKDS-PSLASTIADGA  251 (542)
Q Consensus       176 l~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~  251 (542)
                      +.+.++.++.+|+.+|..+..+++...         ..++..+...   ++-.+...+..+..++..+ +.     ....
T Consensus       185 l~d~n~~V~~~Al~lL~ei~~~d~~a~---------~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~  250 (355)
T 3tjz_B          185 ASSDNIMVQYHALGLLYHVRKNDRLAV---------SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSP  250 (355)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTTCHHHH---------HHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------
T ss_pred             hcCCCccHHHHHHHHHHHHHhhchHHH---------HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHH
Confidence            999999999999999999998654322         2333333322   3444444444444444433 21     2235


Q ss_pred             hHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH
Q psy12594        252 TTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI  330 (542)
Q Consensus       252 ~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  330 (542)
                      .++ +..+|++.++.|...|+.++..+.......     ...++..|..++.++++.++..|++.|..+....|...+  
T Consensus       251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~--  323 (355)
T 3tjz_B          251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT--  323 (355)
T ss_dssp             ------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH--
Confidence            677 888899999999999999999886522221     134566788889999999999999999998877665443  


Q ss_pred             HhhCchHHHHHhhcCCChhhHHHHHHHHH
Q psy12594        331 IELQGVGSLQTILQCPHKEQLQVAAAWTL  359 (542)
Q Consensus       331 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  359 (542)
                         ..-.-+.+++.+++ ..+...|.-+|
T Consensus       324 ---~~n~~ie~li~d~n-~sI~t~Aittl  348 (355)
T 3tjz_B          324 ---ACNLDLENLVTDAN-RSIATLAITTL  348 (355)
T ss_dssp             -----------------------------
T ss_pred             ---HHHHHHHHHccCCc-HhHHHHHHHHh
Confidence               22334566777643 35655555444

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.01  E-value=3.8e-08  Score=104.47  Aligned_cols=267  Identities=14%  Similarity=0.104  Sum_probs=186.7

Q ss_pred             ChHHHHhhhc---CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC--------HhHHHHHHHHHHHH
Q psy12594        126 DLDSIISSLH---DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ--------LSLKHAAAFALDGI  194 (542)
Q Consensus       126 ~v~~Lv~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------~~~~~~a~~~L~nl  194 (542)
                      ++..|-..|.   +.++.++..|+.+|+-+......   .     ++..|...+.+++        +.++..|+..|+-+
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            4666677776   56789999999999988765432   1     2566777776544        67888898899987


Q ss_pred             hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCChhHHHHHHH
Q psy12594        195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPHGLVQKNAAT  272 (542)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~~~v~~~a~~  272 (542)
                      ..++.  .     ..+++.|..++.+.+..+++.++.+|+-+--...+ .      .++. |+..+. ..++.+++.++.
T Consensus       465 ~~GS~--~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aal  530 (963)
T 4ady_A          465 AMGSA--N-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLAV  530 (963)
T ss_dssp             STTCC--C-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             hcCCC--C-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHHH
Confidence            55332  1     12347788888877777788888888876333221 1      3344 555544 447899999999


Q ss_pred             HHHHHhcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHHhHhh--cCChHHHHHHHhhCchHHHHHhhcCCChh
Q psy12594        273 LLRDMCKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMALGYMS--AQSEQIAEQIIELQGVGSLQTILQCPHKE  349 (542)
Q Consensus       273 ~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  349 (542)
                      +|+.+..+.++..         +.+++.|. +.++.+|..++.+++--.  .++..         .++.|+..+.+..++
T Consensus       531 gLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d  592 (963)
T 4ady_A          531 GLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCH
T ss_pred             HHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcH
Confidence            9998876665444         44555555 466778888887776433  33332         344455555544556


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC---CchhhHHhhcCCCCH
Q psy12594        350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE---NPKELEQMLLGNVSE  426 (542)
Q Consensus       350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~---~i~~L~~lL~~~~~~  426 (542)
                      .+|..|..+|+.+..++++         .++.++..|.+.. ++.+|..|++||+.+....+   .+..|..+++ +.|.
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~  661 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVD  661 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCH
Confidence            8999999999998777764         4566677665443 68999999999999865433   3678888888 9999


Q ss_pred             HHHHHHHHHHHhhCCCC
Q psy12594        427 ELLASILCAFAKILPCD  443 (542)
Q Consensus       427 ~v~~~~l~~l~~ll~~~  443 (542)
                      .|++.++.+|..+....
T Consensus       662 ~Vrq~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          662 FVRQAAMIALSMILIQQ  678 (963)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999888654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.75  E-value=2.8e-07  Score=80.06  Aligned_cols=186  Identities=17%  Similarity=0.173  Sum_probs=146.8

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      .+.+..|..+|.+.|+.++..|+.+|..+.+..+...+. ..-...++.++.++++.+..+...|+.+|..+..+.|-..
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~-~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM-MVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            357788999999999999999999999999433333333 3334689999999999999999999999999987754433


Q ss_pred             h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                      . +.  .+...+..++.++++-++.+++..++.+.-..+.  +     +++..+..++.+.++.++..++.+|.+++..+
T Consensus       111 ~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          111 KTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--K-----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--H-----HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            3 33  2567888999999999999999999988432211  1     23677889999999999999999999999844


Q ss_pred             H--HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594        199 P--ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       199 ~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  240 (542)
                      .  +..     .+++.-+-.++++.|+.+++.|+.++-.+....
T Consensus       182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            2  222     344566788899999999999999999998763

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.73  E-value=4e-06  Score=81.95  Aligned_cols=318  Identities=13%  Similarity=0.165  Sum_probs=204.4

Q ss_pred             cCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCh---hhhh-HhhcCCh-HHHH-hhhcCCCHHHHHHHHHHHHHhhcC
Q psy12594         83 RNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDE---RCAG-LIEDKDL-DSII-SSLHDFDPDTRANAALALGGLAKD  155 (542)
Q Consensus        83 ~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~---~~~~-~~~~g~v-~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~  155 (542)
                      ..+...++.+|+. .+.++..+.+..+..+...++   .... +.+..-. ..+. ..+..+++-....+..++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            3467788888885 678999999999989887765   4444 4443322 2122 233444455566666666666532


Q ss_pred             ChH---HHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCC--ChHHHHHhhcC---------
Q psy12594        156 NKH---FAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCD--VIPLLIKALNN---------  220 (542)
Q Consensus       156 ~~~---~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~ll~~---------  220 (542)
                      .+.   ....+..   .+.++..|... +.+.+..++.+|..|.. .++.|..+.+.+  .++.+..++..         
T Consensus       156 ~~~~~~~l~~l~~---~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~  231 (480)
T 1ho8_A          156 GLHNVKLVEKLLK---NNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR  231 (480)
T ss_dssp             TTCCHHHHHHHHH---CHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             CCccHhHHHHHhh---hHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence            222   2222221   11455566653 35567788999999998 677888887544  35666543331         


Q ss_pred             -------C-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchH--H-HHHhhcCC-ChhHHHHHHHHHHHHhcCCh----HH
Q psy12594        221 -------D-EVNVKADAFLCLADIAKDSPSLASTIADGATT--L-AVEHLTYP-HGLVQKNAATLLRDMCKHNL----RL  284 (542)
Q Consensus       221 -------~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~----~~  284 (542)
                             . ...++..++.++|-|+-... ..+.+...++.  + |+..++.. .+.+.+-++.+|.|+....+    ..
T Consensus       232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~  310 (480)
T 1ho8_A          232 IVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKV  310 (480)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred             cccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhH
Confidence                   1 35678999999999987754 66666666554  6 77777776 79999999999999987652    22


Q ss_pred             HH-HHHhcCCHHHHHHhhhcC---CccchHHHHHHHhHhh----------------------cCChHH-HHHHHh-----
Q psy12594        285 AN-LVVLAGGLDGLLRLIDCN---GGYNSLPAIMALGYMS----------------------AQSEQI-AEQIIE-----  332 (542)
Q Consensus       285 ~~-~~~~~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~----------------------~~~~~~-~~~~~~-----  332 (542)
                      .. .+...++ +.++..|...   |+++.. .+..|...-                      .-+|.. ...++.     
T Consensus       311 ~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e-dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k  388 (480)
T 1ho8_A          311 IKQLLLLGNA-LPTVQSLSERKYSDEELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE  388 (480)
T ss_dssp             HHHHHHHHCH-HHHHHHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred             HHHHHHHccc-hHHHHHHhhCCCCcHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH
Confidence            22 2333344 4566666553   333222 222221111                      111211 112222     


Q ss_pred             -----hCchHHHHHhhcC---------CChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHH
Q psy12594        333 -----LQGVGSLQTILQC---------PHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSK  398 (542)
Q Consensus       333 -----~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~  398 (542)
                           ..++..|+++|.+         ++++.+..-||.-+|.++.+.|+-+..+-+.|+-..+++++.++  +++||.+
T Consensus       389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~--d~~Vr~~  466 (480)
T 1ho8_A          389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS--DSRVKYE  466 (480)
T ss_dssp             GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS--SHHHHHH
T ss_pred             HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC--CHHHHHH
Confidence                 2367889999974         23577888999999999999998888777889999999999987  5799999


Q ss_pred             HHHHHHHHHhh
Q psy12594        399 CKNALNILIPK  409 (542)
Q Consensus       399 a~~aL~nl~~~  409 (542)
                      |..|+..++.+
T Consensus       467 AL~avQklm~~  477 (480)
T 1ho8_A          467 ALKATQAIIGY  477 (480)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.70  E-value=2.9e-08  Score=91.36  Aligned_cols=184  Identities=15%  Similarity=0.123  Sum_probs=139.4

Q ss_pred             hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594        127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSPELAESA  205 (542)
Q Consensus       127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  205 (542)
                      -+.+.+.+.+.+...|..++..|..+....+.....-. ..+++.|...+ ++.+..++..|+.+++.|+..-.......
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            34577888899999999999999998864222100000 13367788888 48999999999999999996322211122


Q ss_pred             hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-ChH
Q psy12594        206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-NLR  283 (542)
Q Consensus       206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~  283 (542)
                      + ..++|.++..+.+.++.+|..+..+|..++...+ .      ..+++ +...+.+.++.++..++..|..+... .+.
T Consensus        96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred             H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence            2 4567999999999999999999999999987643 2      25678 99999999999999999999996443 343


Q ss_pred             H--HHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        284 L--ANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       284 ~--~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      .  ...+  ...+|.++.++.+.++.+|..|..+++.++.
T Consensus       168 ~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          168 ALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1  2222  3678999999999999999999999998864

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.70  E-value=1.4e-05  Score=78.08  Aligned_cols=320  Identities=12%  Similarity=0.082  Sum_probs=201.5

Q ss_pred             hCCchHHHHhhhc-CCChHHHHHHHHHHHHhHccCC-h---HHHHHHHhcC-cHHHHHHhhccCC-HHHHHHHHHHHHHH
Q psy12594         39 DLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKH-V---DIRQEVLERN-LVALVLKDLTKQN-KHYKKTALHMLTCV  111 (542)
Q Consensus        39 ~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~-~---~~~~~i~~~~-~l~~Lv~~L~~~~-~~~~~~a~~~L~~l  111 (542)
                      +..++..++.+|+ ....++.+..+..+..+.  .. +   .....+.+.. ....+.....+.+ ......+..++..+
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL--~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll  152 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELL--SSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLL  152 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHH--HCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHH--hcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHH
Confidence            3466778888886 456788888888888888  44 3   3334434332 2222333332334 44445555555555


Q ss_pred             hcCChhhhhHhhcCChH--HHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhccC--------
Q psy12594        112 AQQDERCAGLIEDKDLD--SIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCG--ALPPLVQILAS--------  178 (542)
Q Consensus       112 ~~~~~~~~~~~~~g~v~--~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~ll~~--------  178 (542)
                      ........... ...+.  -++..|.. ++...+..++.+|..+.. .+++|..+.+.+  .++.++.+++.        
T Consensus       153 ~~~~~~~~~~l-~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~  230 (480)
T 1ho8_A          153 VQNGLHNVKLV-EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT  230 (480)
T ss_dssp             TSTTTCCHHHH-HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             hccCCccHhHH-HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence            43322111100 01112  23444444 234556678888888887 677788887653  36666544331        


Q ss_pred             -------C--CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCCh--HHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh----
Q psy12594        179 -------P--QLSLKHAAAFALDGIVKHSPELAESASDCDVI--PLLIKALN-NDEVNVKADAFLCLADIAKDSPS----  242 (542)
Q Consensus       179 -------~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i--~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~----  242 (542)
                             .  ...++..++.++.-++. .++....+...+..  +.|+.+++ ....++.+-++.+|.|+....+.    
T Consensus       231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~  309 (480)
T 1ho8_A          231 RIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK  309 (480)
T ss_dssp             --------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence                   1  25678999999999998 66677777766543  56666676 44688999999999999987631    


Q ss_pred             h-HHHHHhhchHHHHHhhcCC---ChhHHHHHHHHHHHHh---------------------cCChH---------HHHHH
Q psy12594        243 L-ASTIADGATTLAVEHLTYP---HGLVQKNAATLLRDMC---------------------KHNLR---------LANLV  288 (542)
Q Consensus       243 ~-~~~~~~~~~i~L~~lL~~~---~~~v~~~a~~~L~~L~---------------------~~~~~---------~~~~~  288 (542)
                      . .+.+...++++++..|...   |+++....-...-.|.                     ..+|.         ++..+
T Consensus       310 ~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf  389 (480)
T 1ho8_A          310 VIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF  389 (480)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG
T ss_pred             HHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHH
Confidence            1 2234444555555555543   7776655443322221                     11111         11111


Q ss_pred             Hh--cCCHHHHHHhhhc----------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594        289 VL--AGGLDGLLRLIDC----------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA  356 (542)
Q Consensus       289 ~~--~~~i~~Lv~lL~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  356 (542)
                      .+  ...+..|+.+|.+          .++.+..-||.=||.++...|.....+-+.|+-..+++++.++ +++|+.+|+
T Consensus       390 ~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL  468 (480)
T 1ho8_A          390 KKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEAL  468 (480)
T ss_dssp             SSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHH
T ss_pred             HhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence            11  1257788899974          3566788899999999999999998888889999999999985 579999999


Q ss_pred             HHHHHhhc
Q psy12594        357 WTLGQIGK  364 (542)
Q Consensus       357 ~~L~~l~~  364 (542)
                      .|+..+..
T Consensus       469 ~avQklm~  476 (480)
T 1ho8_A          469 KATQAIIG  476 (480)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.69  E-value=1.2e-07  Score=87.23  Aligned_cols=182  Identities=19%  Similarity=0.209  Sum_probs=137.6

Q ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCC-hHHHHHHH
Q psy12594         87 ALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDN-KHFAERIV  164 (542)
Q Consensus        87 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~  164 (542)
                      +.+.+.+.+.+...|..++..|..+....+....-.-..+++.|...+. +.+..++..|+.+++.++..- +.+...+ 
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence            3577788889999999999999998765322211001245778888884 899999999999999998422 1111111 


Q ss_pred             HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hh-
Q psy12594        165 QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS-PS-  242 (542)
Q Consensus       165 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~-  242 (542)
                       ..++|.++..+.+.++.+|..+..+|.+++...+  ..     .+++.+...+.+.++.+|..++..|..+.... ++ 
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence             2358999999999999999999999999987432  11     24588888999999999999999999965443 32 


Q ss_pred             -hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        243 -LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       243 -~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                       ....+  ..+++ |..++.+.++++|..|..++..++.
T Consensus       169 ~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence             12222  37889 9999999999999999999999884

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.62  E-value=1.1e-06  Score=76.33  Aligned_cols=184  Identities=16%  Similarity=0.160  Sum_probs=147.7

Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE  161 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  161 (542)
                      .+.+..+..+|...++.++..++.+|..+...-+.... ..-...++.++.++.+.|..+...|++||..+..+.|-..+
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            34778889999999999999999999998876444444 44557899999999999999999999999999876554444


Q ss_pred             HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594        162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP  241 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  241 (542)
                      .+..  ++..|..++++++.-++..++..++.+---++  .     .+++..+..++.+.+.+++..++.+|.+++..+.
T Consensus       112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~-----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED--S-----KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--C-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--h-----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            4443  26788999999999999999999999833221  1     2334778888989999999999999999998553


Q ss_pred             --hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594        242 --SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       242 --~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~  280 (542)
                        +..     ..++. +-.+|++.|+.++..|+.++-.+...
T Consensus       183 D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          183 DSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             SCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence              222     26677 88999999999999999999988754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.60  E-value=3.9e-09  Score=86.97  Aligned_cols=119  Identities=22%  Similarity=0.257  Sum_probs=91.9

Q ss_pred             cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHH
Q psy12594        124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAE  203 (542)
Q Consensus       124 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~  203 (542)
                      ...++.++.+|+++++.+|..|+++|+.+...            .++.|+.+++++++.+|..|+++|+++..  +    
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~----   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E----   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence            35778899999999999999999888876431            26889999999999999999999999864  2    


Q ss_pred             HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                           ..++.|..++.++++.+|..++++|+++..           ...++ |..++.++++.++..++++|..
T Consensus        73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 246889999999999999999999999852           24577 8999988899999999988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.56  E-value=8.9e-09  Score=84.77  Aligned_cols=121  Identities=12%  Similarity=0.124  Sum_probs=93.5

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ...++.+..+|+++++.+|..|+.+|..+.  ..           .++.|+..|.++++.+|..++++|+++..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~--~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMG--DE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCS--ST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhC--ch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence            456788899999999999999999888876  21           26889999999999999999999988752      


Q ss_pred             hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594        120 GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI  194 (542)
Q Consensus       120 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl  194 (542)
                          ...++.|+.+++++++.+|..|+++|+.+..  +         ..++.|+.+++++++.++..|+++|.+|
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                1358899999999999999999999999863  2         2378899999998999999999998754

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.51  E-value=7.2e-06  Score=91.33  Aligned_cols=395  Identities=9%  Similarity=0.020  Sum_probs=209.2

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC------ChHHHHHHHHHHHHhHccCC----------hHHHHH
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK------VPSIQHAALATLGKLMCAKH----------VDIRQE   79 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~------~~~v~~~a~~~L~~l~~~~~----------~~~~~~   79 (542)
                      .|.+..+++..++...-.  ..  .+.++.|+..++++      ++..+..++..|..++  +.          ...++.
T Consensus       101 vr~kl~~~la~i~~~~~p--~W--p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~--EEi~~~~~~~~r~~~~~~  174 (971)
T 2x1g_F          101 VLNRLCISLGAYIVHMLG--EW--PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP--EEAQVIHTSVKRVVLRAE  174 (971)
T ss_dssp             HHHHHHHHHHHHHHHTTC--C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHH--HHHHHCCCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccc--cc--cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH--HHHhccCcHHHHHHHHHH
Confidence            466667777777664221  11  35677888888764      5667788888888877  31          011222


Q ss_pred             HHhcCcHHHHHHhh----cc-CCH-------HHHHHHHHHHHHHhc--CChhhhhHhhcCChHHHHhhhc----------
Q psy12594         80 VLERNLVALVLKDL----TK-QNK-------HYKKTALHMLTCVAQ--QDERCAGLIEDKDLDSIISSLH----------  135 (542)
Q Consensus        80 i~~~~~l~~Lv~~L----~~-~~~-------~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~----------  135 (542)
                      +.  ..++.++.++    .. .++       .++..++.++.....  .-+..   .....++.+.. |.          
T Consensus       175 l~--~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~  248 (971)
T 2x1g_F          175 IA--KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHA  248 (971)
T ss_dssp             HH--TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC-
T ss_pred             HH--HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccc
Confidence            22  2344444433    32 222       678888888877554  22111   22334555555 41          


Q ss_pred             ------CCCHHHHHHHHHHHHHhhcCCh--HHHHHHHHcCChHHHHH-------hccCCC---HhHHHHHHHHHHHHhcC
Q psy12594        136 ------DFDPDTRANAALALGGLAKDNK--HFAERIVQCGALPPLVQ-------ILASPQ---LSLKHAAAFALDGIVKH  197 (542)
Q Consensus       136 ------~~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~-------ll~~~~---~~~~~~a~~~L~nl~~~  197 (542)
                            +.+++++..|+.++..+....+  +..+.+ . .+++.++.       .+.+.+   .+.....+..+..++..
T Consensus       249 ~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~  326 (971)
T 2x1g_F          249 GDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTA-F-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER  326 (971)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHH-H-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred             cccccCcCCcHHHHHHHHHHHHHHcCccccccHHHH-H-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence                  1357899999999999986332  111111 1 11233332       223334   26666667777766653


Q ss_pred             CHHHHH-----------HhhhCCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhcC---------ChhhHHHHH--hh
Q psy12594        198 SPELAE-----------SASDCDVIPLLIKALNN-----DEVNVKADAFLCLADIAKD---------SPSLASTIA--DG  250 (542)
Q Consensus       198 ~~~~~~-----------~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~--~~  250 (542)
                      .+....           ..+ ...++.++.+...     .++++...+++.+..++..         .......+.  -.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~  405 (971)
T 2x1g_F          327 HSTLLLSGITSADPELSILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA  405 (971)
T ss_dssp             THHHHHHHHHTCCHHHHHHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCcccccHHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            332211           111 1344555555533     4677889999988887651         111111111  12


Q ss_pred             chHH-HHHhhcCC-Ch--------------hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc-----CCccch
Q psy12594        251 ATTL-AVEHLTYP-HG--------------LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC-----NGGYNS  309 (542)
Q Consensus       251 ~~i~-L~~lL~~~-~~--------------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~-----~~~~~~  309 (542)
                      .+++ ++..+..+ ++              ..|..+..+|..++...++..-    ..+++.+...+.+     .++..+
T Consensus       406 ~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l----~~~~~~l~~~l~~~~~~~~~w~~~  481 (971)
T 2x1g_F          406 HLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYIL----EILAAMLDEAIADLQRHPTHWTKL  481 (971)
T ss_dssp             HHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHH----HHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred             HHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHhccCCCCcHHHH
Confidence            4555 55555433 11              3566777788777754431111    1223344444443     577789


Q ss_pred             HHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHHH
Q psy12594        310 LPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH---SVDNVTALCEENVLSTLLSKI  386 (542)
Q Consensus       310 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll  386 (542)
                      ..++.+++.++.+........+. .+++.+..+..+.+++.++..++|+++.++.-   +++...     .+++.++..+
T Consensus       482 eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l  555 (971)
T 2x1g_F          482 EACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGL  555 (971)
T ss_dssp             HHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHh
Confidence            99999999998765432211111 13332223221212468999999999998632   122111     2456666666


Q ss_pred             hcCCCChHHHHHHHHHHHHHHhhCC-----Cch----hhHHhhcCC--CCHHHHHHHHHHHHhhCC
Q psy12594        387 TQTCVSDNLKSKCKNALNILIPKCE-----NPK----ELEQMLLGN--VSEELLASILCAFAKILP  441 (542)
Q Consensus       387 ~~~~~~~~v~~~a~~aL~nl~~~~~-----~i~----~L~~lL~~~--~~~~v~~~~l~~l~~ll~  441 (542)
                       +    +.|+..|++++.++++.++     +++    .|..++. .  .+.+....+..++..++.
T Consensus       556 -~----~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~-~~~~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          556 -N----SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN-TGRMKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             -H----SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-STTSCHHHHHHHHHHHHHHHH
T ss_pred             -C----hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHH
Confidence             3    2799999999999987653     223    3334555 3  355666666666666654

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.46  E-value=3.4e-06  Score=77.38  Aligned_cols=190  Identities=13%  Similarity=0.076  Sum_probs=136.7

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHH-HhcCChhhhh-Hhh-cCChHHHHhhh-cCCCHHHHHHHHHHHHHhhcCC--hHHH-
Q psy12594         88 LVLKDLTKQNKHYKKTALHMLTC-VAQQDERCAG-LIE-DKDLDSIISSL-HDFDPDTRANAALALGGLAKDN--KHFA-  160 (542)
Q Consensus        88 ~Lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~-~~~-~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~--~~~~-  160 (542)
                      .+.+.+.+.+...|..++..|.. ++.+.+.... ..+ ...+..|...+ ++.+..++..|+.+|+.++..-  +.+. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34556788999999999999999 8754333220 001 13577788888 7889999999999999998422  1222 


Q ss_pred             HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594        161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS  240 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  240 (542)
                      ....  -++|.++..+++..+.++..+..++..++...+.......-...++.|...+++.++.++..++.+|..++...
T Consensus       100 ~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            1211  24899999999999999999999999998743111000000134577888888889999999999999998765


Q ss_pred             hhh---HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        241 PSL---ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       241 ~~~---~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                      +..   ........++| |..++.+.++++|..|..++..++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            421   11122247899 9999999999999999999999874

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.40  E-value=3.4e-07  Score=84.15  Aligned_cols=192  Identities=11%  Similarity=0.054  Sum_probs=137.8

Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHH-hhcCChHHHHHHHH-cCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCH--HHHH
Q psy12594        129 SIISSLHDFDPDTRANAALALGG-LAKDNKHFAERIVQ-CGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSP--ELAE  203 (542)
Q Consensus       129 ~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~--~~~~  203 (542)
                      .+.+.+.+.+..-|..|+..|.. +..+.+.....-.+ ..++..|.+.+ ++.+..++..|+.+|+.|+.+-.  ....
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45667788999999999999999 87543321100000 12366778888 78899999999999999996321  1110


Q ss_pred             HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCCh
Q psy12594        204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNL  282 (542)
Q Consensus       204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~  282 (542)
                      ... ..++|.++..+.+..+.++..+..++..++...+.......-..+++ |+..|++.++.++..++.+|..+....+
T Consensus       100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            111 23578999999999999999999999999875421111000125788 9999999999999999999999886554


Q ss_pred             ---HHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        283 ---RLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       283 ---~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                         ......+....+|.+..++.+.++.+|..|..+++.++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               222122225789999999999999999999999998763

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.34  E-value=0.00049  Score=76.37  Aligned_cols=337  Identities=11%  Similarity=0.110  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-----cCCHHHHHHHHHHHHHHhcCChhhhhHhh-cCChHH
Q psy12594         56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-----KQNKHYKKTALHMLTCVAQQDERCAGLIE-DKDLDS  129 (542)
Q Consensus        56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~v~~  129 (542)
                      .++..++.+|..+.....+.....+  ...++..++.+.     ..++.+...++.++..++... ....+.. .+.++.
T Consensus       261 ~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l~~  337 (960)
T 1wa5_C          261 KVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAMNN  337 (960)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHHHH
Confidence            4677888888888832223222211  124445555554     345788899999998887543 2222211 122333


Q ss_pred             HH-----hhhc---------CCC--------------HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc----
Q psy12594        130 II-----SSLH---------DFD--------------PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA----  177 (542)
Q Consensus       130 Lv-----~lL~---------~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~----  177 (542)
                      ++     ..+.         ..|              ...|..|..+|..++...+.   .++. .+++.+.+.+.    
T Consensus       338 li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~  413 (960)
T 1wa5_C          338 ITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMS  413 (960)
T ss_dssp             HHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC
T ss_pred             HHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhcc
Confidence            33     2221         111              23566777788877754331   1111 12333444444    


Q ss_pred             --CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC-----CChHH----HHHhhcCC---CHHHHHHHHHHHHHHhcCChhh
Q psy12594        178 --SPQLSLKHAAAFALDGIVKHSPELAESASDC-----DVIPL----LIKALNND---EVNVKADAFLCLADIAKDSPSL  243 (542)
Q Consensus       178 --~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-----~~i~~----L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~  243 (542)
                        +++...++.|+.+++.++....... .....     ...+.    +...+.++   ++-+|..++|+++.++..-.  
T Consensus       414 ~~~~~w~~reaal~algaia~~~~~~~-~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--  490 (960)
T 1wa5_C          414 DPSKNWKFKDLYIYLFTALAINGNITN-AGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--  490 (960)
T ss_dssp             ----CHHHHHHHHHHHHHHHBSSCCBT-TBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhcccc-CCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--
Confidence              4567889999999999986321000 00000     22222    33344556   88999999999999987531  


Q ss_pred             HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCCh-------HH-HHHHH--hcCCHHHHHHhhhcCC-----cc
Q psy12594        244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNL-------RL-ANLVV--LAGGLDGLLRLIDCNG-----GY  307 (542)
Q Consensus       244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~-------~~-~~~~~--~~~~i~~Lv~lL~~~~-----~~  307 (542)
                      .+  .-..+++ ++..|.+++..|+..|+++|.+++....       .. ...+.  -...++.|+.++....     ..
T Consensus       491 ~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~  568 (960)
T 1wa5_C          491 KA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (960)
T ss_dssp             HH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             HH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence            11  2346788 8888988889999999999999986411       10 01010  1234556666666641     11


Q ss_pred             chHHHHHHHhHhhcC----ChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHH
Q psy12594        308 NSLPAIMALGYMSAQ----SEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH-SVDNVTALCEENVLSTL  382 (542)
Q Consensus       308 ~~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L  382 (542)
                      ....+..+|+.++..    -......++. .....+....+++.+...+..++.+++.++.. .++.... +...++|.+
T Consensus       569 ~~e~l~~al~~vv~~~~~~~~p~~~~l~~-~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~  646 (960)
T 1wa5_C          569 ENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTF  646 (960)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHH
Confidence            334556666655432    1122222221 22223333334444456777788888888765 3333333 344577888


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        383 LSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       383 ~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ..+|....  .++...+...+..+..
T Consensus       647 ~~iL~~~~--~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          647 LTVFSEDI--QEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             HHHHHTTC--TTTHHHHHHHHHHHHH
T ss_pred             HHHHHhhh--HhhHHHHHHHHHHHHH
Confidence            88887653  3566666666666543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.31  E-value=9.9e-05  Score=81.94  Aligned_cols=332  Identities=12%  Similarity=0.050  Sum_probs=174.4

Q ss_pred             HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc------cCCHHHHHHHHHHHHHHhcCChhhhhHhh-----c
Q psy12594         56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT------KQNKHYKKTALHMLTCVAQQDERCAGLIE-----D  124 (542)
Q Consensus        56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-----~  124 (542)
                      ..|..|...|..++....+.....     .++.+...+.      +.+...+..|+.+++.++.+.........     .
T Consensus       376 s~R~aa~~~L~~l~~~~~~~v~~~-----~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~  450 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNEVLVTNI-----FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL  450 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred             CcHHHHHHHHHHHHHHcchhHHHH-----HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence            467778888888882111112111     2233333344      45677888999999999753211110000     0


Q ss_pred             CChHH----HHhhhcCC---CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        125 KDLDS----IISSLHDF---DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       125 g~v~~----Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      ...+.    ++..++++   ++.+|..++|+++.++..-+.  + . -..+++.+++.|.++++.++..|+++|.+++..
T Consensus       451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~-~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--A-Q-LIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--H-H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--H-H-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            22222    33344556   799999999999999864321  1 1 123478888899988899999999999999873


Q ss_pred             C-------HHHHHHhhh---CCChHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCCh-hhHHHHHhhchHH-HHHhh-
Q psy12594        198 S-------PELAESASD---CDVIPLLIKALNNDE---VN--VKADAFLCLADIAKDSP-SLASTIADGATTL-AVEHL-  259 (542)
Q Consensus       198 ~-------~~~~~~~~~---~~~i~~L~~ll~~~~---~~--~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~-L~~lL-  259 (542)
                      .       ++.....+.   ...++.|..++....   .+  ..+.+..++..++.... .....+  ..+++ |...+ 
T Consensus       527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~  604 (960)
T 1wa5_C          527 RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVT  604 (960)
T ss_dssp             BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHH
T ss_pred             ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHH
Confidence            1       111111111   223445555665531   11  23455555555543211 111111  12333 44333 


Q ss_pred             ---cCC-ChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC
Q psy12594        260 ---TYP-HGLVQKNAATLLRDMCKH-NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ  334 (542)
Q Consensus       260 ---~~~-~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  334 (542)
                         +++ +...+..++.++..+... .++... -.....+|.+...+..........+..+++.+..........+.  .
T Consensus       605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~  681 (960)
T 1wa5_C          605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK--P  681 (960)
T ss_dssp             HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--G
T ss_pred             HHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHH--H
Confidence               333 667777889999988876 333333 23446778888888877667777788777776543211111011  2


Q ss_pred             chHHHH--HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594        335 GVGSLQ--TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC  410 (542)
Q Consensus       335 ~l~~L~--~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~  410 (542)
                      +++.+.  ..+...  . .....+.+|.++....++.... ++ .++..+-.++.+..    .+..|.+.+..++..+
T Consensus       682 ~~~~l~~~~~~~~~--~-~~~~~~~~L~~~~~~~~~~~~~-~~-~~l~~~~~~~~~~~----~~~~a~~ll~~i~~~~  750 (960)
T 1wa5_C          682 LAQPLLAPNVWELK--G-NIPAVTRLLKSFIKTDSSIFPD-LV-PVLGIFQRLIASKA----YEVHGFDLLEHIMLLI  750 (960)
T ss_dssp             GHHHHTSGGGGCCT--T-THHHHHHHHHHHHHHHGGGCSC-SH-HHHHHHHHHHTCTT----THHHHHHHHHHHHHHS
T ss_pred             HHHHHcCHHHhcCC--C-CchhHHHHHHHHHHhChHHHHH-HH-HHHHHHHHHhCCCc----ccchHHHHHHHHHHHC
Confidence            344444  444432  1 2234555665553322211000 00 01222223333331    2478888998887654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.28  E-value=0.00035  Score=77.67  Aligned_cols=399  Identities=11%  Similarity=0.100  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHhcCC--CCchHHHHhCCchHHHHhhhcC-----CChHHHHHHHHHHHHhHccCC------hHHH-HHHH
Q psy12594         16 ARLCFVQTMSAFADK--PSTIHFLKDLNVVDLIVPLLAD-----KVPSIQHAALATLGKLMCAKH------VDIR-QEVL   81 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~s-----~~~~v~~~a~~~L~~l~~~~~------~~~~-~~i~   81 (542)
                      .|.+..+++..++..  +...     .+.++.|+.++++     .++..+..++..|..+.  +.      +..+ ..+.
T Consensus       119 ir~kl~~~la~i~~~~~p~~W-----p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~--ee~~~~~~~~~~r~~~~  191 (963)
T 2x19_B          119 VLTRLCVALASLALSMMPDAW-----PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP--EEFQTSRLPQYRKGLVR  191 (963)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHCC------CHHHHHHHHHHHHHHH--HHHTTCCC---------
T ss_pred             HHHHHHHHHHHHHHHhCcccc-----chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH--HHHhcccCcHHHHHHHH
Confidence            455666666666653  3332     3677888888865     25567778888888887  31      0001 1111


Q ss_pred             h--cCcHHHHHH----hhccC--CHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh
Q psy12594         82 E--RNLVALVLK----DLTKQ--NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLA  153 (542)
Q Consensus        82 ~--~~~l~~Lv~----~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~  153 (542)
                      +  ...++.++.    .+...  +..+...++.++..........  ......++.+.+.+.  +++++..|+.++..+.
T Consensus       192 ~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~--~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~  267 (963)
T 2x19_B          192 TSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPL--QDCEALIQAAFAALQ--DSELFDSSVEAIVNAI  267 (963)
T ss_dssp             CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCG--GGTHHHHHHHHHHTT--STTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCc--ccchHHHHHHHHHhC--CchHHHHHHHHHHHHH
Confidence            0  123444443    34332  2347777777776654321111  112345666777773  5778899999999988


Q ss_pred             cCC--hHHHHH---HHH--cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHH------HhhhCCChHHHHHhhcC
Q psy12594        154 KDN--KHFAER---IVQ--CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAE------SASDCDVIPLLIKALNN  220 (542)
Q Consensus       154 ~~~--~~~~~~---i~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~------~~~~~~~i~~L~~ll~~  220 (542)
                      ...  +.....   +..  .+..+.+...+...+.......+..+..++...+....      ..+ ...++.++.+...
T Consensus       268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~l~~ll~~~~~  346 (963)
T 2x19_B          268 SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF-LALVNMIMFCTGI  346 (963)
T ss_dssp             TCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHTC
T ss_pred             cccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH-HHHHHHHHHHHcC
Confidence            632  111111   111  02222233333444555555666666666542221110      111 1344555555553


Q ss_pred             -----CCHHHHHHHHHHHHHHhcCC--------hhhHHHHHh--hchHH-HHHhhcCCCh---------------hHHHH
Q psy12594        221 -----DEVNVKADAFLCLADIAKDS--------PSLASTIAD--GATTL-AVEHLTYPHG---------------LVQKN  269 (542)
Q Consensus       221 -----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~i~-L~~lL~~~~~---------------~v~~~  269 (542)
                           .++++...++..+..++...        +.....+..  ..+++ ++..+..+++               +.+..
T Consensus       347 ~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~  426 (963)
T 2x19_B          347 PGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD  426 (963)
T ss_dssp             SSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHH
Confidence                 34556666666666665411        111111111  23455 5555543321               12445


Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhh----hcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhh--
Q psy12594        270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLI----DCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTIL--  343 (542)
Q Consensus       270 a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--  343 (542)
                      +..+|..++...+...   . ...++.+...+    .+.++..+..++.+++.++.+.....     ...++.++..+  
T Consensus       427 ~~~~L~~~~~~~~~~~---l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~  497 (963)
T 2x19_B          427 ISDTLMYVYEMLGAEL---L-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPR  497 (963)
T ss_dssp             HHHHHHHHHHHHTHHH---H-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHccHHH---H-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHh
Confidence            5556666553211110   0 11223344444    45567788999999999987643211     12333333333  


Q ss_pred             -cCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-----Cchhh-
Q psy12594        344 -QCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE-----NPKEL-  416 (542)
Q Consensus       344 -~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~-----~i~~L-  416 (542)
                       .. +++.++..++|+++.++.--.... ..+ ..+++.++..|.+    +.|+..|++++.+++..++     +++.+ 
T Consensus       498 l~~-~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~~~~~l~p~~~~il  570 (963)
T 2x19_B          498 ISI-SNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN----PELSVSSVSTLKKICRECKYDLPPYAANIV  570 (963)
T ss_dssp             SCC-CSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC----GGGHHHHHHHHHHHHHHTGGGCTTTHHHHH
T ss_pred             CCC-CcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC----chHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence             22 245799999999999864211111 122 3688888888864    4899999999999987652     23333 


Q ss_pred             ---HHhhcCC--CCHHHHHHHHHHHHhhCCCC
Q psy12594        417 ---EQMLLGN--VSEELLASILCAFAKILPCD  443 (542)
Q Consensus       417 ---~~lL~~~--~~~~v~~~~l~~l~~ll~~~  443 (542)
                         ..++. .  -+.+....+..++..++...
T Consensus       571 ~~l~~~l~-~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          571 AVSQDVLM-KQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhc-cCCCChHHHHHHHHHHHHHHhcC
Confidence               33444 3  24577777788887776544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.23  E-value=3.3e-05  Score=83.30  Aligned_cols=294  Identities=12%  Similarity=0.104  Sum_probs=194.3

Q ss_pred             hhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh--hhhHhhcCC
Q psy12594         49 LLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER--CAGLIEDKD  126 (542)
Q Consensus        49 lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g~  126 (542)
                      -+...+..-+..++..+..+........   ....+.+..+.+.+.+....  ..|+.++..++.....  ..+..-.+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~   96 (986)
T 2iw3_A           22 KLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQL   96 (986)
T ss_dssp             HHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTT
T ss_pred             hccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHH
Confidence            3444334555666677777662111110   00114566666666653333  8888899999855321  123222268


Q ss_pred             hHHHHhhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594        127 LDSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAES  204 (542)
Q Consensus       127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~  204 (542)
                      ++.++..+.+....+|..|..++..+... ++.-..     .++|.|+..|++. ....+..|+.++..|+...++....
T Consensus        97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~  171 (986)
T 2iw3_A           97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL  171 (986)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHH
Confidence            89999999888899999988888777643 333222     2389999999766 5899999999999999866654443


Q ss_pred             hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594        205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~  283 (542)
                      -+ ..++|.+...+.+..+++...+..++..+|..-. +.+.   ...+| |+..+.++++  .-.++..|..-+--...
T Consensus       172 ~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v  244 (986)
T 2iw3_A          172 RM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV  244 (986)
T ss_dssp             HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC
T ss_pred             hc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee
Confidence            33 5678999999999999999999999999987321 2211   25688 9999998854  22233333322111100


Q ss_pred             HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc--CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHH
Q psy12594        284 LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA--QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQ  361 (542)
Q Consensus       284 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~  361 (542)
                      ....+  .-.+|.|.+-|......++..++-++.|++.  .++.-...++- ..+|.+......-.++++|+.|.+++..
T Consensus       245 ~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~  321 (986)
T 2iw3_A          245 TPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKT  321 (986)
T ss_dssp             CHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred             cchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence            00000  1235667777777777788899999999997  55665655654 7888888888887888999888888776


Q ss_pred             h
Q psy12594        362 I  362 (542)
Q Consensus       362 l  362 (542)
                      |
T Consensus       322 l  322 (986)
T 2iw3_A          322 L  322 (986)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.21  E-value=0.0033  Score=70.41  Aligned_cols=371  Identities=13%  Similarity=0.136  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHHhcCC--CCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-h--------H-----HHHH
Q psy12594         16 ARLCFVQTMSAFADK--PSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-V--------D-----IRQE   79 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~--------~-----~~~~   79 (542)
                      .|.+..+++..++..  |...     .+.++.|+.+++ .++..+..++.+|..+.  +. .        .     .+..
T Consensus       116 i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~--eev~~~~~~~~~~~r~~~lk~~  187 (1049)
T 3m1i_C          116 LINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-SSVNVCENNMIVLKLLS--EEVFDFSAEQMTQAKALHLKNS  187 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-TCHHHHHHHHHHHHHHH--HHHHTSCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-cChHHHHHHHHHHHHHH--HHHHHhcchhhhhHHHHHHHHH
Confidence            355566666666653  3222     356778888876 45556667777777776  32 0        0     1122


Q ss_pred             HHhc--CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594         80 VLER--NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN  156 (542)
Q Consensus        80 i~~~--~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  156 (542)
                      +...  .+++.+...+.+ ++..++..++.++.++..--+ ...+.....++.+.+.+. .++.++..|+.+|..+....
T Consensus       188 l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~  265 (1049)
T 3m1i_C          188 MSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLK  265 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCC
Confidence            2221  122333444443 567889999999988754332 222445566777764332 37899999999999988542


Q ss_pred             --hH---HHHHHHH--cCChHHHHH-hc-------------cCCCHhHHHHHHHHHHHHhcCC-------HHHHHHhhhC
Q psy12594        157 --KH---FAERIVQ--CGALPPLVQ-IL-------------ASPQLSLKHAAAFALDGIVKHS-------PELAESASDC  208 (542)
Q Consensus       157 --~~---~~~~i~~--~g~i~~L~~-ll-------------~~~~~~~~~~a~~~L~nl~~~~-------~~~~~~~~~~  208 (542)
                        +.   ....+..  .+++..+.. ++             .+.+.+.....+..+..+....       ++.... + .
T Consensus       266 ~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l-~  343 (1049)
T 3m1i_C          266 IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL-L-L  343 (1049)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH-H-H
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH-H-H
Confidence              21   1111111  111222211 11             1223444445555554443311       111111 1 1


Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhc----CChhhHHHH--HhhchHH-HHHhhcCCC------------------
Q psy12594        209 DVIPLLIKALNNDEVNVKADAFLCLADIAK----DSPSLASTI--ADGATTL-AVEHLTYPH------------------  263 (542)
Q Consensus       209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~--~~~~~i~-L~~lL~~~~------------------  263 (542)
                      .+++.++.....++.++...++..+..++.    .. ......  .-..+++ ++..+..++                  
T Consensus       344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~-~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~  422 (1049)
T 3m1i_C          344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEP-LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVK  422 (1049)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHST-TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSC
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhc
Confidence            345666666667788888888887777776    21 111111  1123445 555543220                  


Q ss_pred             -h---hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCchH
Q psy12594        264 -G---LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVG  337 (542)
Q Consensus       264 -~---~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  337 (542)
                       .   ..+..+..+|..++...+...-    .-+.+.+-..+.+  .++..+..++++++.++.........-.-..+++
T Consensus       423 d~d~~~~~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~  498 (1049)
T 3m1i_C          423 ESDTIQLYKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK  498 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence             0   2344566677777643332211    1223444445543  4667889999999999865433221111123455


Q ss_pred             HHHHhhcCC----ChhhHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594        338 SLQTILQCP----HKEQLQVAAAWTLGQIGKH---SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC  410 (542)
Q Consensus       338 ~L~~ll~~~----~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~  410 (542)
                      .|..+....    +.+.++..++|+++.++.-   +++...     .+++.++..+.++  ++.|+..|++++.+++..+
T Consensus       499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~  571 (1049)
T 3m1i_C          499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHET--HEGVQDMACDTFIKIVQKC  571 (1049)
T ss_dssp             HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHH
Confidence            555543321    2234555689999987532   222222     2566677777765  5799999999999998764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.09  E-value=0.00013  Score=67.77  Aligned_cols=151  Identities=15%  Similarity=0.104  Sum_probs=118.3

Q ss_pred             HHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594        172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA  251 (542)
Q Consensus       172 L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  251 (542)
                      +++-|.+.+.+-++.++.-|..+-..+.+....++..+++..|+.+....+.+.+..++.+|.+|..+...+...+....
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~  202 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD  202 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence            44555556677788888999985555888999999999999999999999999999999999999987543334444677


Q ss_pred             hHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc----------CCHHHHHHhhh---cCCccchHHHHHHHh
Q psy12594        252 TTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA----------GGLDGLLRLID---CNGGYNSLPAIMALG  317 (542)
Q Consensus       252 ~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----------~~i~~Lv~lL~---~~~~~~~~~a~~~L~  317 (542)
                      .+. +..++.+.+..|.+.++..|..++..++.....+.+.          .-++.|+..|+   +.+..++..|+..|-
T Consensus       203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN  282 (339)
T 3dad_A          203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN  282 (339)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            888 9999998899999999999999988776554433221          23778999997   667778888887766


Q ss_pred             HhhcC
Q psy12594        318 YMSAQ  322 (542)
Q Consensus       318 ~l~~~  322 (542)
                      .+..+
T Consensus       283 ~lL~~  287 (339)
T 3dad_A          283 KTLAA  287 (339)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            65443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.09  E-value=0.00018  Score=66.80  Aligned_cols=153  Identities=13%  Similarity=0.044  Sum_probs=117.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594        213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA  291 (542)
Q Consensus       213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~  291 (542)
                      .++.-|.+.+.+.++.++.-|..+-..+.++...++..+++. |+......+...+..++.+|.++-.+...+...+...
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~  201 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS  201 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence            344555567788888899999984445557999999999999 9999999999999999999999987655554544466


Q ss_pred             CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh----------CchHHHHHhhc--CCChhhHHHHHHHHH
Q psy12594        292 GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL----------QGVGSLQTILQ--CPHKEQLQVAAAWTL  359 (542)
Q Consensus       292 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~--~~~~~~v~~~a~~~L  359 (542)
                      ..+..+..++.+.+..+...|+.+|..++..++.....+.+.          ..+..|+.+|.  ...+.+++..|.-.+
T Consensus       202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI  281 (339)
T 3dad_A          202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI  281 (339)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            789999999998888899999999999988776555444332          23788999997  224567887776655


Q ss_pred             HHhhcC
Q psy12594        360 GQIGKH  365 (542)
Q Consensus       360 ~~l~~~  365 (542)
                      -.+..+
T Consensus       282 N~lL~~  287 (339)
T 3dad_A          282 NKTLAA  287 (339)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            554443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.04  E-value=0.0089  Score=66.01  Aligned_cols=382  Identities=13%  Similarity=0.142  Sum_probs=199.7

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC---------h-----HHHHHHHhc--CcHHHHHHhhcc-CCHHHHH
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH---------V-----DIRQEVLER--NLVALVLKDLTK-QNKHYKK  102 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~---------~-----~~~~~i~~~--~~l~~Lv~~L~~-~~~~~~~  102 (542)
                      .+.++.++.+++++ +......+..|..|.  +.         .     ..++.+...  .+++.+...|.+ .++.+..
T Consensus       137 p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~--EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~  213 (1023)
T 4hat_C          137 PEFIPELIGSSSSS-VNVCENNMIVLKLLS--EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIV  213 (1023)
T ss_dssp             TTHHHHHHHHTTTC-HHHHHHHHHHHHHHH--HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hHHHHHHHHHhcCC-HHHHHHHHHHHHHHH--HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            45677777777543 445556667776665  21         0     112222221  123333334443 5677888


Q ss_pred             HHHHHHHHHhcCChhhhhHhhcCChHHHH-hhhcCCCHHHHHHHHHHHHHhhcCC---h--HHHHHHHHc--CChHHH--
Q psy12594        103 TALHMLTCVAQQDERCAGLIEDKDLDSII-SSLHDFDPDTRANAALALGGLAKDN---K--HFAERIVQC--GALPPL--  172 (542)
Q Consensus       103 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~i~~~--g~i~~L--  172 (542)
                      .++.++.....-- +...++..+.++.+. .++.  ++.++..|+.||..+....   +  .+.+.+...  +.++.+  
T Consensus       214 ~~L~~l~s~l~WI-~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~  290 (1023)
T 4hat_C          214 ATLESLLRYLHWI-PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIAT  290 (1023)
T ss_dssp             HHHHHHHHHTTTS-CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            8889988876532 233366778899999 8874  6789999999999998622   2  222222110  111111  


Q ss_pred             ------------HHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC---------CChHHHHHhhcCCCHHHHHHHHH
Q psy12594        173 ------------VQILASPQLSLKHAAAFALDGIVKHSPELAESASDC---------DVIPLLIKALNNDEVNVKADAFL  231 (542)
Q Consensus       173 ------------~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~---------~~i~~L~~ll~~~~~~~~~~a~~  231 (542)
                                  ...-...+.+....-+..+..+.....   . +++.         .++..|+.+-..++.++-..++.
T Consensus       291 ~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~---~-li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~  366 (1023)
T 4hat_C          291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR---A-LLESDESLRELLLNAHQYLIQLSKIEERELFKTTLD  366 (1023)
T ss_dssp             HTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG---G-GGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH---H-HHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence                        111122245555556666655554111   1 1211         11224444444557777677666


Q ss_pred             HHHHHhcCC--hhhHHHHHh---hchHH-HHHhhcCCC--------------------hh-HHH-HHHHHHHHHhcCCh-
Q psy12594        232 CLADIAKDS--PSLASTIAD---GATTL-AVEHLTYPH--------------------GL-VQK-NAATLLRDMCKHNL-  282 (542)
Q Consensus       232 ~L~~l~~~~--~~~~~~~~~---~~~i~-L~~lL~~~~--------------------~~-v~~-~a~~~L~~L~~~~~-  282 (542)
                      .-..++..-  ...+.....   ..+++ ++..+..++                    ++ -.. ..-.+|..++.-.. 
T Consensus       367 FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~  446 (1023)
T 4hat_C          367 YWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI  446 (1023)
T ss_dssp             HHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH
Confidence            554554310  000111111   23455 555554432                    00 111 11133333332111 


Q ss_pred             HHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHH-HHHHHhhCchHHHHHhhcCC----ChhhHHHHH
Q psy12594        283 RLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQI-AEQIIELQGVGSLQTILQCP----HKEQLQVAA  355 (542)
Q Consensus       283 ~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a  355 (542)
                      +..+     -.++.+.+.+.+  .++..+.++++++|.++.+..+. ...++ ..+++.|+.++.+.    +...++..+
T Consensus       447 ~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~  520 (1023)
T 4hat_C          447 DTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDI  520 (1023)
T ss_dssp             HHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHH
Confidence            1111     122334444443  46778999999999998765443 22222 35778888887631    123456678


Q ss_pred             HHHHHHhhc---CChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-------------CchhhHHh
Q psy12594        356 AWTLGQIGK---HSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE-------------NPKELEQM  419 (542)
Q Consensus       356 ~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~-------------~i~~L~~l  419 (542)
                      +|++|.++.   .+++....     ++..|+..+.++  ++.++..|+||+.++.++|.             +++.++..
T Consensus       521 ~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~  593 (1023)
T 4hat_C          521 MYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD  593 (1023)
T ss_dssp             HHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence            899998853   23332222     344455555543  46899999999999987653             23333322


Q ss_pred             hcC---CCCHHHHHHHHHHHHhhCCCCh
Q psy12594        420 LLG---NVSEELLASILCAFAKILPCDP  444 (542)
Q Consensus       420 L~~---~~~~~v~~~~l~~l~~ll~~~~  444 (542)
                      +..   .-+++-...+.+++..++...+
T Consensus       594 l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          594 IQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            220   3455666677777777777654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.03  E-value=0.0011  Score=73.74  Aligned_cols=373  Identities=11%  Similarity=0.067  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCch--HHHHhCCchHHHHhh-------hcCCCh---HHHHHHHHHHHHhHccCC-hH-HH-
Q psy12594         13 YQRARLCFVQTMSAFADKPSTI--HFLKDLNVVDLIVPL-------LADKVP---SIQHAALATLGKLMCAKH-VD-IR-   77 (542)
Q Consensus        13 ~~~~r~~~~~~l~~l~~~~~~~--~~l~~~g~i~~L~~l-------L~s~~~---~v~~~a~~~L~~l~~~~~-~~-~~-   77 (542)
                      ....|..+++++..+...+...  ..+.. ..+|.++.+       +.++|.   ......++.+..++  .. .. .. 
T Consensus       257 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~--~~~~~~~~~  333 (971)
T 2x1g_F          257 ENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSV--ERHSTLLLS  333 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHH--HHTHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            3455778888888887743311  11111 223333322       233342   55555666666666  22 11 11 


Q ss_pred             ----------HHHHhcCcHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcC---------ChhhhhH---hhcCChHHH
Q psy12594         78 ----------QEVLERNLVALVLKDLTK-----QNKHYKKTALHMLTCVAQQ---------DERCAGL---IEDKDLDSI  130 (542)
Q Consensus        78 ----------~~i~~~~~l~~Lv~~L~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~---~~~g~v~~L  130 (542)
                                ..+  ...++.++.+..+     .++.+...++.++..++..         .+.....   .-...++.+
T Consensus       334 ~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l  411 (971)
T 2x1g_F          334 GITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRIL  411 (971)
T ss_dssp             HHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH
T ss_pred             HhccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence                      111  1344555555433     4677888888888777541         1111111   111344555


Q ss_pred             HhhhcCC--------CH-------HHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhccC-----CCHhHHHHHHH
Q psy12594        131 ISSLHDF--------DP-------DTRANAALALGGLAKDNK-HFAERIVQCGALPPLVQILAS-----PQLSLKHAAAF  189 (542)
Q Consensus       131 v~lL~~~--------~~-------~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~a~~  189 (542)
                      +..+.-+        ++       ..|..+..+|..++...+ .....+     ++.+-..+..     .+...++.++.
T Consensus       412 ~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~  486 (971)
T 2x1g_F          412 VRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIY  486 (971)
T ss_dssp             HHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHH
Confidence            5444311        11       345566666666664332 221111     2222233322     45678999999


Q ss_pred             HHHHHhcCCHHHHHHhhhCCChHHHHHhh---c--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCC
Q psy12594        190 ALDGIVKHSPELAESASDCDVIPLLIKAL---N--NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPH  263 (542)
Q Consensus       190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~  263 (542)
                      +++.++....+...     ..++.++.++   .  +.++.++..++|+++.++..-....+  .-..+++ |+..|.   
T Consensus       487 ~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl~~l~~~l~---  556 (971)
T 2x1g_F          487 SFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA--YIPPAINLLVRGLN---  556 (971)
T ss_dssp             HHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHH---
T ss_pred             HHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHhC---
Confidence            99999885433221     2233333332   2  34889999999999998863211111  1135677 777772   


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCCh-HHHHHHHhhCchHHHH
Q psy12594        264 GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSE-QIAEQIIELQGVGSLQ  340 (542)
Q Consensus       264 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~  340 (542)
                      +.++..|++++.+++........... ...+..+..++..+  +...+.....+++.++...+ +....... ..++.++
T Consensus       557 ~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~  634 (971)
T 2x1g_F          557 SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCF  634 (971)
T ss_dssp             SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHH
Confidence            78999999999999965543322111 34566777777764  44578888888888876422 22222222 2333333


Q ss_pred             ----HhhcCCC-hhhHHHHHHHHHHHhhcC-----C-----------hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHH
Q psy12594        341 ----TILQCPH-KEQLQVAAAWTLGQIGKH-----S-----------VDNVTALCEENVLSTLLSKITQTCVSDNLKSKC  399 (542)
Q Consensus       341 ----~ll~~~~-~~~v~~~a~~~L~~l~~~-----~-----------~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a  399 (542)
                          .++.... +++.+.....++..++..     .           ++.... ....+++.+..++.....++++.+.+
T Consensus       635 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~e~~  713 (971)
T 2x1g_F          635 EELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVEEIDVLEAA  713 (971)
T ss_dssp             HHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccccHHHHHHH
Confidence                3444322 222333444444444311     1           011111 22457888888887543356899999


Q ss_pred             HHHHHHHHh
Q psy12594        400 KNALNILIP  408 (542)
Q Consensus       400 ~~aL~nl~~  408 (542)
                      ++++++++.
T Consensus       714 ~~~~~~~~~  722 (971)
T 2x1g_F          714 CSAMKHAIT  722 (971)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.00  E-value=0.0012  Score=71.28  Aligned_cols=295  Identities=13%  Similarity=0.115  Sum_probs=195.7

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC---hHHHHHHH
Q psy12594         88 LVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN---KHFAERIV  164 (542)
Q Consensus        88 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---~~~~~~i~  164 (542)
                      .+++.+...+..-+..++..+..+........ ....+.++.+.+.+.+....  +.|+.++..++...   +..-..++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~   94 (986)
T 2iw3_A           18 ELFQKLSVATADNRHEIASEVASFLNGNIIEH-DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV   94 (986)
T ss_dssp             HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS-SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred             HHHhhccccchhHHHHHHHHHHHHHhcccccc-ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence            34555554334445666667777655431111 12236777777777665443  88888899998432   22223333


Q ss_pred             HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChh
Q psy12594        165 QCGALPPLVQILASPQLSLKHAAAFALDGIVKHS-PELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPS  242 (542)
Q Consensus       165 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~  242 (542)
                        +.+|.++..+.+....+|.+|..++..+...- +....     .++|.|...+.+. ....+..|+.++..|+...++
T Consensus        95 --~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           95 --QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             --TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             --HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence              57899999999888999999888888777633 33332     3458888888755 689999999999999987642


Q ss_pred             hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC--ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594        243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH--NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM  319 (542)
Q Consensus       243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l  319 (542)
                       +-...-..++| +-..+-+..++|+..+..++..+|.-  +.+.      ...+|.|+..+.+++.  ...++..|+.-
T Consensus       168 -~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          168 -QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             -HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence             22223357888 88889999999999999999999852  1221      3578999999988743  33344444432


Q ss_pred             hc--CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHHHhcCCCChHH
Q psy12594        320 SA--QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH--SVDNVTALCEENVLSTLLSKITQTCVSDNL  395 (542)
Q Consensus       320 ~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v  395 (542)
                      ..  .-+.-.-.    =.+|.|.+-|... ...++..++-++.|++.-  +|.....++. ..+|.+-.....- .++++
T Consensus       239 tfv~~v~~~~l~----~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~-~~pe~  311 (986)
T 2iw3_A          239 TFVAEVTPATLS----IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATI-ADPEA  311 (986)
T ss_dssp             CCCSCCCHHHHH----HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTC-CSHHH
T ss_pred             eeEeeecchhHH----HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhcc-CCHHH
Confidence            21  11111111    2466777777663 457888999999999863  5555555443 4677776666654 47899


Q ss_pred             HHHHHHHHHHHHh
Q psy12594        396 KSKCKNALNILIP  408 (542)
Q Consensus       396 ~~~a~~aL~nl~~  408 (542)
                      |..|..|+..|..
T Consensus       312 r~~~~~a~~~l~~  324 (986)
T 2iw3_A          312 REVTLRALKTLRR  324 (986)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888853

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.96  E-value=0.0031  Score=69.97  Aligned_cols=341  Identities=8%  Similarity=-0.002  Sum_probs=176.4

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hH---HHHHHHh--cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VD---IRQEVLE--RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ  114 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~---~~~~i~~--~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~  114 (542)
                      ..++.+.+.+  .++..+..|+.++..+..... +.   ....+..  .+..+.+...+..++.+.....+.++..++..
T Consensus       241 ~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~  318 (963)
T 2x19_B          241 ALIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGEN  318 (963)
T ss_dssp             HHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3455555555  367889999999999994322 11   1111111  11122222223334555555556666665532


Q ss_pred             Chh-h------hhHhhcCChHHHHhhhcC-----CCHHHHHHHHHHHHHhhcCC--------hHHHHHHHH--cCChHHH
Q psy12594        115 DER-C------AGLIEDKDLDSIISSLHD-----FDPDTRANAALALGGLAKDN--------KHFAERIVQ--CGALPPL  172 (542)
Q Consensus       115 ~~~-~------~~~~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~i~~--~g~i~~L  172 (542)
                      ... .      .... ...++.++.+..+     .++.+...++.....++...        +.....+..  ..+++.+
T Consensus       319 ~~~~l~~~~~~~~~~-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l  397 (963)
T 2x19_B          319 HSRALLDQVEHWQSF-LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL  397 (963)
T ss_dssp             HHHHHHHCGGGHHHH-HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCccchHHH-HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            111 0      0100 1345556655554     24445555555444444310        111111110  0234555


Q ss_pred             HHhccCCCH---------------hHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh----cCCCHHHHHHHHHHH
Q psy12594        173 VQILASPQL---------------SLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL----NNDEVNVKADAFLCL  233 (542)
Q Consensus       173 ~~ll~~~~~---------------~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L  233 (542)
                      +..+..++.               +.|..+..+|..++...++   .+. .-..+.+...+    .+.+...++.+++++
T Consensus       398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al  473 (963)
T 2x19_B          398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGF  473 (963)
T ss_dssp             HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred             HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            555543221               2244555566555542111   111 11123444444    456788999999999


Q ss_pred             HHHhcCChhhHHHHHhhchHH-HHHhh---cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccch
Q psy12594        234 ADIAKDSPSLASTIADGATTL-AVEHL---TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNS  309 (542)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~i~-L~~lL---~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~  309 (542)
                      +.++.......     ...++ ++..+   .++++.++..+++++..++..-....+.  -..+++.++..+.+  +.++
T Consensus       474 ~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl~~l~~~l~~--~~V~  544 (963)
T 2x19_B          474 QSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVLPLVLHALGN--PELS  544 (963)
T ss_dssp             HHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTHHHHHHHTTC--GGGH
T ss_pred             HHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHhCC--chHH
Confidence            99997643211     12333 33332   3357889999999999987542221121  24788889988865  7899


Q ss_pred             HHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-hhhHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHHHh
Q psy12594        310 LPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-KEQLQVAAAWTLGQIGKHSV-DNVTALCEENVLSTLLSKIT  387 (542)
Q Consensus       310 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~  387 (542)
                      ..|+.++.+++........... ..++..|..++.... +...+..+..+++.++...+ +.....++ .+++.+...+.
T Consensus       545 ~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l~  622 (963)
T 2x19_B          545 VSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLE  622 (963)
T ss_dssp             HHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHH
Confidence            9999999999865433221112 135555666666532 35788888999999875443 43333332 24444444433


Q ss_pred             c---CCCChHHHHHH
Q psy12594        388 Q---TCVSDNLKSKC  399 (542)
Q Consensus       388 ~---~~~~~~v~~~a  399 (542)
                      .   ...+++.+...
T Consensus       623 ~~~~~~~~~~~~~~~  637 (963)
T 2x19_B          623 KLAEEIPNPSNKLAI  637 (963)
T ss_dssp             HHHSSCSCHHHHHHH
T ss_pred             HHHhCCCCHHHHHHH
Confidence            1   21245555543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.86  E-value=0.0014  Score=72.10  Aligned_cols=305  Identities=10%  Similarity=0.030  Sum_probs=166.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHcCChHHHH
Q psy12594         96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN--KHFAERIVQCGALPPLV  173 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~  173 (542)
                      .++.++..++.++.....-- +...++..+.++.+.++|.+  ++++..|+.||..+....  ++.+..++..=.+...+
T Consensus       205 ~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~  281 (980)
T 3ibv_A          205 KNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF  281 (980)
T ss_dssp             TCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence            67888889999999877532 23335566788888888864  899999999999988433  33333333320011222


Q ss_pred             Hhcc--CCCHhHHHHHHHHHHHHhcC------CH-----HHHH---HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594        174 QILA--SPQLSLKHAAAFALDGIVKH------SP-----ELAE---SASDCDVIPLLIKALNNDEVNVKADAFLCLADIA  237 (542)
Q Consensus       174 ~ll~--~~~~~~~~~a~~~L~nl~~~------~~-----~~~~---~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  237 (542)
                      ..+.  .++.+..+..+..+..++..      .+     +.+.   ..+ .+.++.++.++.+++.++-..++..+..+.
T Consensus       282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l-~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l  360 (980)
T 3ibv_A          282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL-YNLFPYLIRYLSDDYDETSTAVFPFLSDLL  360 (980)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH-HHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence            2222  35666665555444433321      11     1111   111 357888889998888888777766655554


Q ss_pred             cCC---------hhhHHHHHhhchHH-HHHhhcCC-----Ch-----------hHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594        238 KDS---------PSLASTIADGATTL-AVEHLTYP-----HG-----------LVQKNAATLLRDMCKHNLRLANLVVLA  291 (542)
Q Consensus       238 ~~~---------~~~~~~~~~~~~i~-L~~lL~~~-----~~-----------~v~~~a~~~L~~L~~~~~~~~~~~~~~  291 (542)
                      ...         ......+. ..+++ ++..+..+     +.           +.|+.....+..++.-.++..-...-.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~  439 (980)
T 3ibv_A          361 VSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS  439 (980)
T ss_dssp             HHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            210         00111111 23445 55555432     11           245444433333333333322210000


Q ss_pred             CCHHHHHHhh---hcCCccchHHHHHHHhHhhcCChHHHHHH-Hhh----CchHHHHHhhc----CCChhhHHHHHHHHH
Q psy12594        292 GGLDGLLRLI---DCNGGYNSLPAIMALGYMSAQSEQIAEQI-IEL----QGVGSLQTILQ----CPHKEQLQVAAAWTL  359 (542)
Q Consensus       292 ~~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~----~~l~~L~~ll~----~~~~~~v~~~a~~~L  359 (542)
                      ...+.+...+   .+.++..++.++.+|+.++.+........ -+.    .+++.+..++.    ..+.+.++..+++++
T Consensus       440 ~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l  519 (980)
T 3ibv_A          440 AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEIL  519 (980)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            1112222333   23457789999999999987644311110 001    13444555544    124478999999999


Q ss_pred             HHhhcCChHHHHHHHHcCChHHHHHHHhc--C--CCChHHHHHHHHHHHHHHhhCC
Q psy12594        360 GQIGKHSVDNVTALCEENVLSTLLSKITQ--T--CVSDNLKSKCKNALNILIPKCE  411 (542)
Q Consensus       360 ~~l~~~~~~~~~~l~~~~~l~~L~~ll~~--~--~~~~~v~~~a~~aL~nl~~~~~  411 (542)
                      +..+.--..      ....++.++..+-+  +  +++..|+..|+.++.++++.+.
T Consensus       520 ~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          520 VRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            998643211      12355666666555  1  2246899999999999988764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.80  E-value=0.0041  Score=68.49  Aligned_cols=297  Identities=12%  Similarity=0.059  Sum_probs=160.4

Q ss_pred             HHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhc--
Q psy12594         18 LCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLT--   94 (542)
Q Consensus        18 ~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~--   94 (542)
                      ..+++++..... --....+.+.+.++.+..++.+  +.++..|+.+|..+.+... ++.+..++..=.+...+..+.  
T Consensus       211 ~~~L~~l~s~i~-wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~  287 (980)
T 3ibv_A          211 GLCLQVYAQWVS-WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQ  287 (980)
T ss_dssp             HHHHHHHHHHTT-TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHh-hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcc
Confidence            344444444443 1223445556788888888864  8999999999999995544 444444433212233333333  


Q ss_pred             cCCHHHHHHHHHHHHHHhc------CCh-----hhh-h--HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-----
Q psy12594         95 KQNKHYKKTALHMLTCVAQ------QDE-----RCA-G--LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD-----  155 (542)
Q Consensus        95 ~~~~~~~~~a~~~L~~l~~------~~~-----~~~-~--~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-----  155 (542)
                      .++.+..+.-+..+..++.      ..+     +.. .  -.-.+.++.++.++.+++.++-..+...+..+...     
T Consensus       288 ~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~  367 (980)
T 3ibv_A          288 STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKES  367 (980)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcc
Confidence            3566665544444433321      111     111 1  11136889999999998888877776665554421     


Q ss_pred             -----ChHHHHHHHHcCChHHHHHhccCC-----------C-----HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHH
Q psy12594        156 -----NKHFAERIVQCGALPPLVQILASP-----------Q-----LSLKHAAAFALDGIVKHSPELAESASDCDVIPLL  214 (542)
Q Consensus       156 -----~~~~~~~i~~~g~i~~L~~ll~~~-----------~-----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L  214 (542)
                           .+..+..+.  .+++.+++-++-+           +     .+.|......+..++.-+++......-.-+.+.+
T Consensus       368 ~~~~~~~~~~~~l~--~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l  445 (980)
T 3ibv_A          368 SSKELSASLKEFLK--SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL  445 (980)
T ss_dssp             TSCCCCHHHHHHHH--HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHH--HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence                 111111111  1234444444321           1     2455555534444444334333221101111233


Q ss_pred             HHhhc---CCCHHHHHHHHHHHHHHhcCChhhHHHH-----HhhchHH-HHHhhc-----CCChhHHHHHHHHHHHHhcC
Q psy12594        215 IKALN---NDEVNVKADAFLCLADIAKDSPSLASTI-----ADGATTL-AVEHLT-----YPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       215 ~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----~~~~~i~-L~~lL~-----~~~~~v~~~a~~~L~~L~~~  280 (542)
                      ...+.   +.+...++.++.+|+.+++.-......+     .-..+++ +..++.     .+.+.++..+++++...+..
T Consensus       446 ~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~  525 (980)
T 3ibv_A          446 STAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASF  525 (980)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG
T ss_pred             HHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            33442   2357789999999999988643211111     0123456 666655     45789999999999988754


Q ss_pred             ChHHHHHHHhcCCHHHHHH------hhhcCCccchHHHHHHHhHhhcCChH
Q psy12594        281 NLRLANLVVLAGGLDGLLR------LIDCNGGYNSLPAIMALGYMSAQSEQ  325 (542)
Q Consensus       281 ~~~~~~~~~~~~~i~~Lv~------lL~~~~~~~~~~a~~~L~~l~~~~~~  325 (542)
                      -..      ....++.++.      .+.++++.++..|+.++.+++.....
T Consensus       526 ~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          526 FDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             GGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             Hhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            321      1234444444      44456778999999999999875543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.75  E-value=0.04  Score=61.65  Aligned_cols=217  Identities=16%  Similarity=0.188  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHH----HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhc-CCChHHHHHHHHHHHHhHccCC----h
Q psy12594          4 KSVKNSIDHYQ----RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKH----V   74 (542)
Q Consensus         4 ~~~~~~~~~~~----~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~----~   74 (542)
                      .++.|.+....    ..|..+-+.|..+-.+|         ++...+..++. +.++.+|..|+..|.+......    +
T Consensus        16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~   86 (1049)
T 3m1i_C           16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN   86 (1049)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence            34555554432    24666777777665554         34455555653 5688999999999999874321    3


Q ss_pred             HHHHHHHhcCcHHHHHHhhccC-----CHHHHHHHHHHHHHHhcCC-hhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHH
Q psy12594         75 DIRQEVLERNLVALVLKDLTKQ-----NKHYKKTALHMLTCVAQQD-ERCAGLIEDKDLDSIISSLHDFDPDTRANAALA  148 (542)
Q Consensus        75 ~~~~~i~~~~~l~~Lv~~L~~~-----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~  148 (542)
                      +.+..+ +...+..+...-..+     ++.++...+.++..++... ++..    .+.++.+++.++ .++..++.+..+
T Consensus        87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~~~~~~~~~l~~  160 (1049)
T 3m1i_C           87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-SSVNVCENNMIV  160 (1049)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-cChHHHHHHHHH
Confidence            333333 323333333322111     4677888888888877542 1111    246778888886 556666777777


Q ss_pred             HHHhhcCCh--------HHH-----HHHHHc--CChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594        149 LGGLAKDNK--------HFA-----ERIVQC--GALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIP  212 (542)
Q Consensus       149 L~~l~~~~~--------~~~-----~~i~~~--g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~  212 (542)
                      |..++..-.        ..+     ..+...  .+++.+.+++.. .+..++..++.++.+....-+  ...+.+...++
T Consensus       161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~  238 (1049)
T 3m1i_C          161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILE  238 (1049)
T ss_dssp             HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHH
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHH
Confidence            777663111        001     112211  123334444543 357788899999987665332  12233344555


Q ss_pred             HHHH-hhcCCCHHHHHHHHHHHHHHhcC
Q psy12594        213 LLIK-ALNNDEVNVKADAFLCLADIAKD  239 (542)
Q Consensus       213 ~L~~-ll~~~~~~~~~~a~~~L~~l~~~  239 (542)
                      .+.. ++  .+++++..++.+|..+...
T Consensus       239 ~l~~~~l--~~~~~~~~a~~~L~~i~~~  264 (1049)
T 3m1i_C          239 LLSTKFM--TSPDTRAITLKCLTEVSNL  264 (1049)
T ss_dssp             HHHTHHH--HSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhC--CCHhHHHHHHHHHHHHHhC
Confidence            5552 22  2566666666666666543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.59  E-value=0.0001  Score=66.69  Aligned_cols=67  Identities=24%  Similarity=0.094  Sum_probs=37.8

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcC
Q psy12594        214 LIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAG  292 (542)
Q Consensus       214 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~  292 (542)
                      +..++.++++.+|..++..+                  ..+ |..++.+++..|+..++..+.                 
T Consensus       175 l~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------  219 (244)
T 1lrv_A          175 LGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS-----------------  219 (244)
T ss_dssp             GGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred             HHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence            44555666666666665432                  124 556666777777776666532                 


Q ss_pred             CHHHHHHhhhcCCccchHHHHHHHh
Q psy12594        293 GLDGLLRLIDCNGGYNSLPAIMALG  317 (542)
Q Consensus       293 ~i~~Lv~lL~~~~~~~~~~a~~~L~  317 (542)
                       .+.|..+ .++++.|+..+...||
T Consensus       220 -~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          220 -LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             -HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             -HHHHHHc-cCCCHHHHHHHHHHhC
Confidence             2344444 6667777776665443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.44  E-value=0.021  Score=50.63  Aligned_cols=182  Identities=16%  Similarity=0.232  Sum_probs=127.6

Q ss_pred             HHH-HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCC-----hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHH
Q psy12594         17 RLC-FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKV-----PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVL   90 (542)
Q Consensus        17 r~~-~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~-----~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv   90 (542)
                      |.+ ++..+-.++.||+.|..|.++.+--.|-++|...+     +..|..++.+++.+....+++....+...+.+|..+
T Consensus        72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            444 44555667789999999999999888888886432     478999999999999666688889999999999999


Q ss_pred             HhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594         91 KDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP  170 (542)
Q Consensus        91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  170 (542)
                      +.+..+++-.|.-|.+++.++..++.....+         .     ..++-......+|.++..                
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd~GL~Yi---------C-----~t~eRF~av~~vL~~mV~----------------  201 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDDTGLAYI---------C-----QTYERFSHVAMILGKMVL----------------  201 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHH---------T-----SSHHHHHHHHHHHHHHHH----------------
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccchhHHHH---------H-----ccHHHHHHHHHHHHHHHH----------------
Confidence            9999999999999999999987655322221         1     122222333334444332                


Q ss_pred             HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh-------CCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594        171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD-------CDVIPLLIKALNNDEVNVKADAFLCLADI  236 (542)
Q Consensus       171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  236 (542)
                         .+.+++++.+..+..++-..|+. ++..+..+..       .|.   +..++ ..|+.+++.-...+.|+
T Consensus       202 ---~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~~LP~~Lrd~t---f~~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          202 ---QLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQCLPDQLKDTT---FAQVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             ---HTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHHHSCGGGTSST---THHHH-TSCHHHHHHHHHHHHHS
T ss_pred             ---HHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHhCcHHhhChH---HHHHH-hcCHHHHHHHHHHHHhc
Confidence               24466778888889999998888 6766665542       122   22222 24667777666666665

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.35  E-value=0.00046  Score=67.98  Aligned_cols=240  Identities=14%  Similarity=0.101  Sum_probs=150.8

Q ss_pred             cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh-hhhHh--hcCChHHHHhhh---------cCCC-HHHHHHHHHHHHH
Q psy12594         85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDER-CAGLI--EDKDLDSIISSL---------HDFD-PDTRANAALALGG  151 (542)
Q Consensus        85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~--~~g~v~~Lv~lL---------~~~~-~~~~~~a~~~L~~  151 (542)
                      ....|+.-|-++..++|..|+..|+.+...... .....  .....-.++..+         .+.- .-||+.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            345556566678999999999999997643211 11111  112222222222         1111 4699999999999


Q ss_pred             hhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHH
Q psy12594        152 LAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFL  231 (542)
Q Consensus       152 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~  231 (542)
                      + ..-+.-      ..++..|+..+..+..+++..++-.|..+..    .... . .++++.++..|.+.+++++..|+.
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~-L-d~Vv~aVL~GL~D~DDDVRAVAAe  321 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED-K-DGLCRKLVSLLSSPDEDIKLLSAE  321 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC-H-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH-H-HHHHHHHHhhcCCcccHHHHHHHH
Confidence            8 544432      3445555555577789999999999998821    1111 1 355678888889999999999999


Q ss_pred             HHHHHhcCChhhHHHHHhhchHH-HHHhhcCCC--hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccc
Q psy12594        232 CLADIAKDSPSLASTIADGATTL-AVEHLTYPH--GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYN  308 (542)
Q Consensus       232 ~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~  308 (542)
                      +|..++  .++...     .++. +.+.|.+-|  ..-.......|..|+.+++...   .....+|+|..++++.-.+|
T Consensus       322 tLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~---~dp~LVPRL~PFLRHtITSV  391 (800)
T 3oc3_A          322 LLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS---IPPERLKDIFPCFTSPVPEV  391 (800)
T ss_dssp             HHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC---CCSGGGGGTGGGGTCSSHHH
T ss_pred             Hhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc---cChHHHHHHHhhhcCCcHHH
Confidence            999998  222222     4555 666666542  2233445566777776554211   12478999999999999999


Q ss_pred             hHHHHHHHhHhhcCChHHHHHHHhhCchHHHH-HhhcCCChhhHHHHHHHHH
Q psy12594        309 SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQ-TILQCPHKEQLQVAAAWTL  359 (542)
Q Consensus       309 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~~v~~~a~~~L  359 (542)
                      |.+++.++..+.  +.         .+++.+. .++-. ++++++..+..+-
T Consensus       392 R~AVL~TL~tfL--~~---------~~LRLIFQNILLE-~neeIl~lS~~VW  431 (800)
T 3oc3_A          392 RTSILNMVKNLS--EE---------SIDFLVAEVVLIE-EKDEIREMAIKLL  431 (800)
T ss_dssp             HHHHHHHTTTCC--CH---------HHHHHHHHHHHHC-SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--hh---------hHHHHHHHHHHhC-CcHHHHHHHHHHH
Confidence            999999998876  11         2223332 33333 3457776665554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.33  E-value=0.015  Score=51.58  Aligned_cols=218  Identities=15%  Similarity=0.219  Sum_probs=137.9

Q ss_pred             ChHHHHHHHHHHHHhHccCC-hHHHHHHHhc-CcHHHHHHh-------hccCC-----HHHHHHHHHHHHHHhcCChhhh
Q psy12594         54 VPSIQHAALATLGKLMCAKH-VDIRQEVLER-NLVALVLKD-------LTKQN-----KHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        54 ~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~-~~l~~Lv~~-------L~~~~-----~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      +|+.|..|+..|++=-  +. ++....+..+ |.+..|++=       +..+.     ..-...|+..|..++++++...
T Consensus        14 ~p~~Re~AL~eLsk~R--e~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~   91 (268)
T 2fv2_A           14 SPETRENALLELSKKR--ESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRS   91 (268)
T ss_dssp             STTTHHHHHHHHHHHT--TTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHH
T ss_pred             CchhHHHHHHHHHHhh--hccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhh
Confidence            4556777777776655  43 4444444333 555555441       22111     1223455566677787664444


Q ss_pred             hHhhcCChHHHHhhhcCCC-----HHHHHHHHHHHHHhh-cCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHH
Q psy12594        120 GLIEDKDLDSIISSLHDFD-----PDTRANAALALGGLA-KDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG  193 (542)
Q Consensus       120 ~~~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n  193 (542)
                      .+.+....-.|..+|+..+     ..+|..++.+++.+. .++++....+.+.+++|..++.++.++.-.+..|..++..
T Consensus        92 ~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqK  171 (268)
T 2fv2_A           92 AFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQK  171 (268)
T ss_dssp             HHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            4888888777777876554     578899999999988 4567788888999999999999999999999999999998


Q ss_pred             HhcCCHHHHHHhhh--------CCChH-HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH--H----HHh
Q psy12594        194 IVKHSPELAESASD--------CDVIP-LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL--A----VEH  258 (542)
Q Consensus       194 l~~~~~~~~~~~~~--------~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--L----~~l  258 (542)
                      |-.++ .....+..        ..++. .+..+.+++++.+..+++++...|+.+. ..++.+..  .+|  |    +..
T Consensus       172 IL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~-rar~aL~~--~LP~~Lrd~tf~~  247 (268)
T 2fv2_A          172 ILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP-RAREALRQ--CLPDQLKDTTFAQ  247 (268)
T ss_dssp             HHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH-HHHHHHHH--HSCGGGTSSTTHH
T ss_pred             Hhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH-HHHHHHHH--hCcHHhhChHHHH
Confidence            88743 23222211        01122 2233445779999999999999999874 45554432  111  1    111


Q ss_pred             hcCCChhHHHHHHHHHHHH
Q psy12594        259 LTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       259 L~~~~~~v~~~a~~~L~~L  277 (542)
                      +-.+|+.+++.-...+.|+
T Consensus       248 ~l~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          248 VLKDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHTSCHHHHHHHHHHHHHS
T ss_pred             HHhcCHHHHHHHHHHHHhc
Confidence            1234566666655555554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.26  E-value=0.00045  Score=62.47  Aligned_cols=139  Identities=19%  Similarity=0.147  Sum_probs=80.8

Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC
Q psy12594        129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC  208 (542)
Q Consensus       129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~  208 (542)
                      .|..+++++++.+|..++..+   .               .+.+..+++++++.+|..++..   +.             
T Consensus       102 ~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~-------------  147 (244)
T 1lrv_A          102 QLSALMFDEDREVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP-------------  147 (244)
T ss_dssp             GGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC-------------
T ss_pred             HHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC-------------
Confidence            455555666666665555421   0               1234455566666666666542   11             


Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q psy12594        209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANL  287 (542)
Q Consensus       209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~  287 (542)
                        .+.+..+++++++.+|..++..+                  ..+ +..++++++..|+..++..+             
T Consensus       148 --~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~d~~VR~aaa~~l-------------  194 (244)
T 1lrv_A          148 --PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDPEPEVRRIVASRL-------------  194 (244)
T ss_dssp             --GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCSSHHHHHHHHHHC-------------
T ss_pred             --HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCCCHHHHHHHHHhC-------------
Confidence              12344556666777777666531                  113 45666777788887777542             


Q ss_pred             HHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHH
Q psy12594        288 VVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTL  359 (542)
Q Consensus       288 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  359 (542)
                           ..+.|..++.++++.++..++..++                  .+.|..+ .. ++..|+..+...|
T Consensus       195 -----~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D-~~~~VR~aa~~~L  241 (244)
T 1lrv_A          195 -----RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DE-PDPEVRLAIAGRL  241 (244)
T ss_dssp             -----CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CC-CCHHHHHHHHCCC
T ss_pred             -----CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cC-CCHHHHHHHHHHh
Confidence                 2245677788888888888887654                  2334444 44 5678888776554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.26  E-value=0.023  Score=52.82  Aligned_cols=212  Identities=11%  Similarity=0.168  Sum_probs=154.6

Q ss_pred             HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh----hHHHHHh-hchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS----LASTIAD-GATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                      .+...+.+..|+..+..-+-+.|..+..++.++.+....    ..+.+.. ..++. |+....  ++++--.+-..|+.+
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHH
Confidence            444567888899999988999999999999999886542    2233332 23333 333333  566767777778877


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC---chHHHHHhhcCCChhhHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ---GVGSLQTILQCPHKEQLQVA  354 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v~~~  354 (542)
                      .++ +..++.+...+.+..+..++..++=++...|..++..+-.........++..+   +...+-.++.+++ --++..
T Consensus       151 ir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N-YVTkRQ  228 (341)
T 1upk_A          151 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN-YVTKRQ  228 (341)
T ss_dssp             HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS-HHHHHH
T ss_pred             HHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc-chhHHH
Confidence            764 44555577778888999999999999999999999998877777666666543   5666778888854 578999


Q ss_pred             HHHHHHHhhcCCh--HH-HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhc
Q psy12594        355 AAWTLGQIGKHSV--DN-VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLL  421 (542)
Q Consensus       355 a~~~L~~l~~~~~--~~-~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~  421 (542)
                      ++..|+.+.....  .. .+.+-+...+..++.+|++.  +..+|.+|.....=++.+..--+++..+|.
T Consensus       229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~--sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~  296 (341)
T 1upk_A          229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANPNKTQPILDILL  296 (341)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc--hhchhhhhhhheeeeeeCCCCChHHHHHHH
Confidence            9999999976532  22 22233456889999999987  579999999998888877655666666654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.21  E-value=0.0015  Score=64.46  Aligned_cols=241  Identities=13%  Similarity=0.125  Sum_probs=150.7

Q ss_pred             ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc------------cCCC-HhHHHHHHHHHH
Q psy12594        126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL------------ASPQ-LSLKHAAAFALD  192 (542)
Q Consensus       126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll------------~~~~-~~~~~~a~~~L~  192 (542)
                      ..+.|+.-|-++..++|+-|+.+|..+..............+- ...++++            .+.- .++|+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            5667777788889999999999999987432210000000111 2233322            1111 689999999999


Q ss_pred             HHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594        193 GIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAA  271 (542)
Q Consensus       193 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~  271 (542)
                      .+ .+-+..      ..++..++..+..+..+++..++-.|.++.    +....  -.++++ ++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK----EFVED--KDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----GGCCC--HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH----HHHHH--HHHHHHHHHhhcCCcccHHHHHHH
Confidence            98 655432      233444444557788999999999999981    11111  246788 88999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc-cc-hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChh
Q psy12594        272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG-YN-SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE  349 (542)
Q Consensus       272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  349 (542)
                      .+|.-++  .++...     .++..+-..|.+.++ +. ....+..|+.|+.....   .-.....+|.|..++++. -.
T Consensus       321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC-cH
Confidence            9999888  222222     223345555555332 22 23334466666654431   112237889999999995 46


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594        350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL  403 (542)
Q Consensus       350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL  403 (542)
                      .||.+++.++..+.  ...         ++..+.+-+--+. +++++..+..+.
T Consensus       390 SVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            99999999998885  222         3344444333232 568888765555

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.021  Score=52.93  Aligned_cols=186  Identities=13%  Similarity=0.045  Sum_probs=124.4

Q ss_pred             HHHhhccCCHHHHHHHHHHHHHHhcCChhhh--h--Hh-hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-----H
Q psy12594         89 VLKDLTKQNKHYKKTALHMLTCVAQQDERCA--G--LI-EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK-----H  158 (542)
Q Consensus        89 Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~--~--~~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----~  158 (542)
                      +-+.|.+.+...|..++.-|..+....+...  .  +. -....+.+-..+.+.+..++..++.++..++....     .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            5677889999999999999988765432211  1  11 12356677788889999999999999988874211     1


Q ss_pred             HHHHHHHcCChHHHHH-hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594        159 FAERIVQCGALPPLVQ-ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA  237 (542)
Q Consensus       159 ~~~~i~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  237 (542)
                      ......-..+++.|+. .+.+..+.++..+..++..++.... ....     +++.+...+.+.++.++..++..|..+.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            1111122244677775 4788888899998888887765321 1111     2356667788889999999988888876


Q ss_pred             cCC-hh-hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594        238 KDS-PS-LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       238 ~~~-~~-~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~  280 (542)
                      ... .. ......-..+++ +..++.+.++.||..|..++..+...
T Consensus       168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            431 11 101111124677 88899999999999999999888754

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=97.08  E-value=0.012  Score=51.82  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=103.0

Q ss_pred             hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-hccCCCHhHHHHHHHHHHHHhc-CCHHHHHH
Q psy12594        127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ-ILASPQLSLKHAAAFALDGIVK-HSPELAES  204 (542)
Q Consensus       127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nl~~-~~~~~~~~  204 (542)
                      ++....+.+++..++|..|+..|+.+ ...+.         .++.+.. +..+++-.+++.++.++..++. .+++    
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~---------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----  138 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE---------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----  138 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH---------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH---------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence            34455556667789999999988877 32222         2566665 5566779999999999999985 3442    


Q ss_pred             hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594        205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~  283 (542)
                          ..++.+.....+++..+|+.|...+.--+.. +...  ..-..+++ |-.+..+++.-|+..+.+.|..+++..|+
T Consensus       139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence                3678899999999999999998876543332 1111  11123566 55666677999999999999999999999


Q ss_pred             HHHHHHh
Q psy12594        284 LANLVVL  290 (542)
Q Consensus       284 ~~~~~~~  290 (542)
                      ....+++
T Consensus       212 ~V~~~~~  218 (240)
T 3l9t_A          212 LVKIELK  218 (240)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.00  E-value=0.087  Score=58.17  Aligned_cols=138  Identities=9%  Similarity=0.015  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCChhh-hhHhhcCChHHHHhhhcC-----CCHHHHHHHHHHHHHhhcC---ChHHHHHHHHc
Q psy12594         96 QNKHYKKTALHMLTCVAQQDERC-AGLIEDKDLDSIISSLHD-----FDPDTRANAALALGGLAKD---NKHFAERIVQC  166 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~  166 (542)
                      .+...+..++++++.++.+..+. ..-.-..+++.|+.++.+     ..+.++..++|+++..+.-   ++.+-+     
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----
Confidence            56888999999999998764332 222233567788888763     2245666788999987742   233222     


Q ss_pred             CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh------CCChHHHH----HhhcCCCHHHHHHHHHHHHHH
Q psy12594        167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD------CDVIPLLI----KALNNDEVNVKADAFLCLADI  236 (542)
Q Consensus       167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~------~~~i~~L~----~ll~~~~~~~~~~a~~~L~~l  236 (542)
                      .++..|+..+.++++.++..|++++.+||..   ++..+..      ...++.++    ..+..-+++-+..+..+++.+
T Consensus       540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v  616 (1023)
T 4hat_C          540 TVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII  616 (1023)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            2356677778778899999999999999983   4444432      12334333    333345777778899999999


Q ss_pred             hcCCh
Q psy12594        237 AKDSP  241 (542)
Q Consensus       237 ~~~~~  241 (542)
                      ....+
T Consensus       617 i~~~~  621 (1023)
T 4hat_C          617 ISEER  621 (1023)
T ss_dssp             HTTCC
T ss_pred             HHhCC
Confidence            88764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.02  Score=53.06  Aligned_cols=177  Identities=15%  Similarity=0.122  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHhcCCCCch---H-HHHh-CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChH----HHHHHHhcCc
Q psy12594         15 RARLCFVQTMSAFADKPSTI---H-FLKD-LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVD----IRQEVLERNL   85 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~~~~~~---~-~l~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~----~~~~i~~~~~   85 (542)
                      +.|..+++.+..+..+....   . .+.. ....+.+...+.+.+..++..++.++..++......    ......-..+
T Consensus        24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~  103 (278)
T 4ffb_C           24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTW  103 (278)
T ss_dssp             HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH
Confidence            35777777776665432111   1 1111 234566777888999999999999999998322211    1112223346


Q ss_pred             HHHHHH-hhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC--ChHH-HH
Q psy12594         86 VALVLK-DLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD--NKHF-AE  161 (542)
Q Consensus        86 l~~Lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~-~~  161 (542)
                      ++.|+. .+.+..+.++..+..++..++.......     .+++.+...+++.+|.++..++..|..+...  .... ..
T Consensus       104 l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k  178 (278)
T 4ffb_C          104 TPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQ  178 (278)
T ss_dssp             HHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHH
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCch
Confidence            777775 4778889999988888877764332111     1356777888999999999999888887632  1100 11


Q ss_pred             HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      ..+ ..+++.+..++.+.++.+|..|..++..+...
T Consensus       179 ~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          179 TFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             hHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            111 12366788889999999999999999988764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.93  E-value=0.71  Score=50.99  Aligned_cols=381  Identities=13%  Similarity=0.141  Sum_probs=194.9

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--h------------HHHHHHHhcCcHHHHHHh----hc-cCCHHHH
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--V------------DIRQEVLERNLVALVLKD----LT-KQNKHYK  101 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~------------~~~~~i~~~~~l~~Lv~~----L~-~~~~~~~  101 (542)
                      +.++-++.++.+ ++......+..|..|.  +.  +            ..++.+..  .++.++.+    |. ..++.+.
T Consensus       150 ~fi~dLv~~~~~-~~~~~~~~L~IL~~L~--EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv  224 (1073)
T 3gjx_A          150 TFISDIVGASRT-SESLCQNNMVILKLLS--EEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLV  224 (1073)
T ss_dssp             THHHHHHHHHHH-CHHHHHHHHHHHHHHH--HHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHHHHHHH--HHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHH
Confidence            456666666643 3445556677777776  32  0            11223333  24455544    33 3678888


Q ss_pred             HHHHHHHHHHhcCChhhhhHhhcCChHHH-HhhhcCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHc--CChHHHHHhc-
Q psy12594        102 KTALHMLTCVAQQDERCAGLIEDKDLDSI-ISSLHDFDPDTRANAALALGGLAKDN-KHFAERIVQC--GALPPLVQIL-  176 (542)
Q Consensus       102 ~~a~~~L~~l~~~~~~~~~~~~~g~v~~L-v~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~--g~i~~L~~ll-  176 (542)
                      ..++.+|..+.+=- +...+++.+.++.+ ..+|  .++.++..|+.||..+.... +.+.+.+..-  +++..+-.++ 
T Consensus       225 ~~~L~~L~~~~sWI-~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp  301 (1073)
T 3gjx_A          225 HATLETLLRFLNWI-PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLP  301 (1073)
T ss_dssp             HHHHHHHHHHTTTS-CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhc-CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            88888988876433 23336777888887 4666  46789999999999988542 2222222110  1111121222 


Q ss_pred             ------------cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC-C-------ChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594        177 ------------ASPQLSLKHAAAFALDGIVKHSPELAESASDC-D-------VIPLLIKALNNDEVNVKADAFLCLADI  236 (542)
Q Consensus       177 ------------~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-~-------~i~~L~~ll~~~~~~~~~~a~~~L~~l  236 (542)
                                  .+.+.+....-+..+..+....   ...+... +       ++..++.+-..++.++...+...-..|
T Consensus       302 ~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~---~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L  378 (1073)
T 3gjx_A          302 LNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH---GQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHL  378 (1073)
T ss_dssp             TTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH---HHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH---HHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence                        1122445455555666555421   1111111 1       223344444566788777766554444


Q ss_pred             hcC----Ch-----------------hhHHHHHh---hchHH-HHHhhcCCCh----------------------hHHHH
Q psy12594        237 AKD----SP-----------------SLASTIAD---GATTL-AVEHLTYPHG----------------------LVQKN  269 (542)
Q Consensus       237 ~~~----~~-----------------~~~~~~~~---~~~i~-L~~lL~~~~~----------------------~v~~~  269 (542)
                      ...    .+                 ..+..+..   ..+.. ++..+..+++                      .+...
T Consensus       379 ~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~  458 (1073)
T 3gjx_A          379 AAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKN  458 (1073)
T ss_dssp             HHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHH
T ss_pred             HHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHH
Confidence            321    10                 01111111   12233 3444433310                      01112


Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCChHH-HHHHHhhCchHHHHHhhcCC
Q psy12594        270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSEQI-AEQIIELQGVGSLQTILQCP  346 (542)
Q Consensus       270 a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~  346 (542)
                      .-.+|..++.-.+.....    -.++.+-+.+...  ++....++++++|.++..-.+. ...++ ..+++.|+.+..+.
T Consensus       459 mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~  533 (1073)
T 3gjx_A          459 MRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQK  533 (1073)
T ss_dssp             HHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccc
Confidence            222333333222221111    1223344333433  4568899999999997543321 21222 24677777777543


Q ss_pred             C----hhhHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC-------
Q psy12594        347 H----KEQLQVAAAWTLGQIGK---HSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN-------  412 (542)
Q Consensus       347 ~----~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~-------  412 (542)
                      .    ...++...+|++|..+.   .+++....     .+..|+..+.+.  ++.|+..|+.|+..+.++|..       
T Consensus       534 ~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~--~~~vq~aA~~af~~i~~~C~~~lv~~~~  606 (1073)
T 3gjx_A          534 RGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHET--HDGVQDMACDTFIKIAQKCRRHFVQVQV  606 (1073)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCC--STTHHHHHHHHHHHHHHHTGGGGTSCCT
T ss_pred             cccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            2    23355566789988743   23333322     345566666654  469999999999999887642       


Q ss_pred             ---chhhHHhhcC------CCCHHHHHHHHHHHHhhCCCCh
Q psy12594        413 ---PKELEQMLLG------NVSEELLASILCAFAKILPCDP  444 (542)
Q Consensus       413 ---i~~L~~lL~~------~~~~~v~~~~l~~l~~ll~~~~  444 (542)
                         .|.+..+++.      .-+++-.....++++.++..-+
T Consensus       607 ~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p  647 (1073)
T 3gjx_A          607 GEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQT  647 (1073)
T ss_dssp             TCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred             cccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Confidence               2344445541      2245555555666666655543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.83  E-value=0.008  Score=54.62  Aligned_cols=184  Identities=12%  Similarity=0.043  Sum_probs=122.9

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-  120 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-  120 (542)
                      +-+-+...|-+.|...+..|+..|..... ..++......+. .++.+.-.+.+.|..+...++.+|..+...-.+... 
T Consensus        47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~-~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           47 AKVSLMSQLFHKDFKQHLAALDSLVRLAD-TSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             BCHHHHHHHTCSCHHHHHHHHHHHHHHHH-HCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccHHHHHHhcCCCHHHHHHHHHHHHHHhh-hChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            44566777778888889889888888772 122221111110 233333233467899998988888886422111101 


Q ss_pred             Hh---hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        121 LI---EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       121 ~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      +.   ..-.+|.|+.-+.+....+|..+-.++..+..-.+.       ..+++.++..+++.+...|..++..+..+...
T Consensus       125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            11   124689999999999899998888777666531111       12367788888999999999999999888652


Q ss_pred             CHHHHHHhhhCCCh---HHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594        198 SPELAESASDCDVI---PLLIKALNNDEVNVKADAFLCLADIAKD  239 (542)
Q Consensus       198 ~~~~~~~~~~~~~i---~~L~~ll~~~~~~~~~~a~~~L~~l~~~  239 (542)
                      .  ...   ....+   +.+.+++.++|..+|..|..++..+-.+
T Consensus       198 ~--G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          198 A--GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             H--CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             c--CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            1  111   23468   9999999999999999999998876543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.79  E-value=0.33  Score=45.08  Aligned_cols=201  Identities=13%  Similarity=0.134  Sum_probs=142.2

Q ss_pred             HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH----HHHHhh-hCCChHHHHHhhcCCCHHHHHHHHHHHHH
Q psy12594        161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE----LAESAS-DCDVIPLLIKALNNDEVNVKADAFLCLAD  235 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~----~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  235 (542)
                      +.+...+.+..|+..|..-+-+.|..+..++.++.+....    ....+. ...++..|+.-..  ++++.-.+-..|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence            4555667889999999988889999999999999875532    222222 1223333443333  44555555566766


Q ss_pred             HhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc---CCHHHHHHhhhcCCccchHH
Q psy12594        236 IAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA---GGLDGLLRLIDCNGGYNSLP  311 (542)
Q Consensus       236 l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~~i~~Lv~lL~~~~~~~~~~  311 (542)
                      ..++. .+...+.....+- +......++-++...|..++..+-.............   ..+...-.+|.+++.-.+..
T Consensus       150 cir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ  228 (341)
T 1upk_A          150 CIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  228 (341)
T ss_dssp             HHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence            66665 4777777777777 9999999999999999999998755443333333322   35777888999999999999


Q ss_pred             HHHHHhHhhcCCh--HHH-HHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594        312 AIMALGYMSAQSE--QIA-EQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH  365 (542)
Q Consensus       312 a~~~L~~l~~~~~--~~~-~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  365 (542)
                      ++..||.+.....  ... ..+-+..-+..++.+|++.+ ..++.+|-..+--++++
T Consensus       229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeC
Confidence            9999999976533  222 33444577889999999965 58999999888777654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.74  E-value=0.13  Score=50.09  Aligned_cols=256  Identities=15%  Similarity=0.074  Sum_probs=149.5

Q ss_pred             HHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594         88 LVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG  167 (542)
Q Consensus        88 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g  167 (542)
                      .++... .+++..+..|+..+.+...+-|+...    .++..++.+..++|..+|..|++.|..+|.+  +....     
T Consensus        33 ~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----  100 (507)
T 3u0r_A           33 VILDGV-KGGTKEKRLAAQFIPKFFKHFPELAD----SAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----  100 (507)
T ss_dssp             HHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHH----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----
T ss_pred             HHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----
Confidence            344433 46799999999999999887777665    4678999999999999999999999999986  32333     


Q ss_pred             ChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHH
Q psy12594        168 ALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD-SPSLAST  246 (542)
Q Consensus       168 ~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~  246 (542)
                      ++..|+++|+.+++.-...+-.+|..+...++.        +.+..+...+..+++.+|+.++..|..=... ..+....
T Consensus       101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~  172 (507)
T 3u0r_A          101 VADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTK  172 (507)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccH
Confidence            367899999998877777777788888776664        3334444444446788999888777544332 1112222


Q ss_pred             HHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCHHHHHHh---hhcCCccc----hHHHHHHHh
Q psy12594        247 IADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-NLRLANLVVLAGGLDGLLRL---IDCNGGYN----SLPAIMALG  317 (542)
Q Consensus       247 ~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~Lv~l---L~~~~~~~----~~~a~~~L~  317 (542)
                      -.+.-++. +...|++-..+=......+|..+-.. .+...+.+++  .+.....+   +...|+..    ....-.++-
T Consensus       173 E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP  250 (507)
T 3u0r_A          173 EVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVP  250 (507)
T ss_dssp             HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHH
Confidence            33334455 66666555444444444555544322 2332222211  11111111   11122221    112222333


Q ss_pred             Hhhc--CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594        318 YMSA--QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS  366 (542)
Q Consensus       318 ~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  366 (542)
                      ..+.  ++......+++ +++|.+-.+-.....+..+...++++..++...
T Consensus       251 ~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~  300 (507)
T 3u0r_A          251 LFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC  300 (507)
T ss_dssp             GCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC
T ss_pred             HhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCC
Confidence            3333  23344444444 577765544333222347778888888887553

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.72  E-value=0.017  Score=52.39  Aligned_cols=178  Identities=11%  Similarity=-0.010  Sum_probs=117.4

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC----CHHHHH
Q psy12594        128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH----SPELAE  203 (542)
Q Consensus       128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~----~~~~~~  203 (542)
                      +.+...|-+.|..-+..++..|......++......++. +++.+.--+.+.+..+...++.+|..+...    +.....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~  127 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ  127 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            445555666677777777777776654343211111111 233333334467888888888888876431    111111


Q ss_pred             HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-C
Q psy12594        204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-N  281 (542)
Q Consensus       204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~  281 (542)
                      .-. .-++|.|+.-+.++.+.+|..+-.++..++.-.+       -..+.+ ++.-+++.+...|..++..+..+... .
T Consensus       128 ~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          128 EEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             HHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence            100 2356999999999999999999888877764322       124677 88888999999999999998888532 1


Q ss_pred             hHHHHHHHhcCCH---HHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        282 LRLANLVVLAGGL---DGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       282 ~~~~~~~~~~~~i---~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                      ..      ....+   +.+..++.+.|..+|.+|+.++..+-
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            11      13467   99999999999999999999887553

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.60  E-value=0.046  Score=60.74  Aligned_cols=166  Identities=16%  Similarity=0.210  Sum_probs=107.1

Q ss_pred             HHHHHHhhcc----CCHHHHHHHHHHHHHHh----cCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594         86 VALVLKDLTK----QNKHYKKTALHMLTCVA----QQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN  156 (542)
Q Consensus        86 l~~Lv~~L~~----~~~~~~~~a~~~L~~l~----~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  156 (542)
                      +..+..++.+    .++.++..++..++.+.    ...+.... .+ ..+...+.+.+...+.+-+..++++|+|+..  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--  469 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--  469 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence            3344445543    56777777777766654    22211111 11 1123334455566777788889999999975  


Q ss_pred             hHHHHHHHHcCChHHHHHhccC-------CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc--CCCHHHHH
Q psy12594        157 KHFAERIVQCGALPPLVQILAS-------PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN--NDEVNVKA  227 (542)
Q Consensus       157 ~~~~~~i~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~  227 (542)
                      +.         .++.|.+++..       ....++..|+++|.+++...|+...        +.+.+++.  ..++++|.
T Consensus       470 p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRi  532 (1056)
T 1lsh_A          470 PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRI  532 (1056)
T ss_dssp             GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHH
T ss_pred             hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHH
Confidence            22         36677777642       1357889999999999986554332        45677774  45889999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhcCC
Q psy12594        228 DAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCKHN  281 (542)
Q Consensus       228 ~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~~~  281 (542)
                      .|+..|..-   .|..       ..+. +...+.. ++..|...+...|.+++...
T Consensus       533 aA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          533 RSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            998887542   2221       2345 6666666 48999999999999999776

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.52  E-value=0.073  Score=46.87  Aligned_cols=137  Identities=18%  Similarity=0.135  Sum_probs=96.5

Q ss_pred             HhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHh-hhcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCC
Q psy12594         91 KDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIIS-SLHDFDPDTRANAALALGGLAK-DNKHFAERIVQCGA  168 (542)
Q Consensus        91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~-lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~  168 (542)
                      .+..++..++|..|+..|+.+ ...        ...++.+.. +-.+.+-.|++.++.++..++. ..++        ..
T Consensus        78 ~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~  140 (240)
T 3l9t_A           78 LAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KA  140 (240)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TT
T ss_pred             HHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HH
Confidence            344567789999999988877 322        124566665 4456678999999999998884 3443        24


Q ss_pred             hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594        169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI  247 (542)
Q Consensus       169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  247 (542)
                      ++.+....++++..+|+.|...+..-+.. +...  .-..-+++.+-.+..+++..||....|.|..+++.+|+....+
T Consensus       141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~  216 (240)
T 3l9t_A          141 LPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIE  216 (240)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHH
Confidence            78889999999999999998877543331 1100  0001234666667778899999999999999999998655443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.33  E-value=0.22  Score=55.25  Aligned_cols=176  Identities=14%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             hHH-HHHhhcCC----ChhHHHHHHHHHHHHh----cCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC
Q psy12594        252 TTL-AVEHLTYP----HGLVQKNAATLLRDMC----KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ  322 (542)
Q Consensus       252 ~i~-L~~lL~~~----~~~v~~~a~~~L~~L~----~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  322 (542)
                      .+. +..++.++    ++.++..+.-+++.|.    .+.+......+ ......+.+.+...+...+..++++|||+...
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p  470 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP  470 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence            445 66666653    5667777777666664    22211100000 11223344555666666788899999998542


Q ss_pred             ChHHHHHHHhhCchHHHHHhhcC------CChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHH
Q psy12594        323 SEQIAEQIIELQGVGSLQTILQC------PHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLK  396 (542)
Q Consensus       323 ~~~~~~~~~~~~~l~~L~~ll~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~  396 (542)
                                 ..++.|..++..      +....++.+|.++|.++....|...+        +.++.++.+...+.++|
T Consensus       471 -----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvR  531 (1056)
T 1lsh_A          471 -----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELR  531 (1056)
T ss_dssp             -----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHH
T ss_pred             -----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHH
Confidence                       356666666642      11246889999999999877666444        66788887777788999


Q ss_pred             HHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhh
Q psy12594        397 SKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVAR  447 (542)
Q Consensus       397 ~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~  447 (542)
                      ..|+..|...--....+..+...+..+.+.+|...+...|.++.....+..
T Consensus       532 iaA~~~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~  582 (1056)
T 1lsh_A          532 IRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF  582 (1056)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcch
Confidence            999998864311112245555555525677899999999999988774433

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.64  E-value=0.2  Score=46.64  Aligned_cols=133  Identities=11%  Similarity=-0.056  Sum_probs=80.7

Q ss_pred             HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHH-hcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh
Q psy12594        255 AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVV-LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE  332 (542)
Q Consensus       255 L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  332 (542)
                      +...+... .+..+..++++++|+..+.......+. ...+++.+...+.+.+..++.++...+.|++.........-..
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~  231 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK  231 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH
Confidence            44555443 566788999999999976654332221 1234555666666667789999999999987531110000011


Q ss_pred             hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHh
Q psy12594        333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKIT  387 (542)
Q Consensus       333 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~  387 (542)
                      ..++..+..++....+.+....++.+||++...+++..+.....++-..+-....
T Consensus       232 ~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~  286 (304)
T 3ebb_A          232 AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS  286 (304)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence            1255666677776667788888999999998876654433333444444333333

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.60  E-value=0.13  Score=50.20  Aligned_cols=249  Identities=16%  Similarity=0.102  Sum_probs=146.8

Q ss_pred             CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHH
Q psy12594        136 DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLI  215 (542)
Q Consensus       136 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~  215 (542)
                      .+++..+..|+..+.......|+.++..     +..++++..+++..+|..|...|-.+|.+  +....+     ..+|.
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV-----ADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHHH
Confidence            3468899999999999998899887775     67799999999999999999999999995  444444     48999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCC
Q psy12594        216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-NLRLANLVVLAGG  293 (542)
Q Consensus       216 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~  293 (542)
                      ++|+..++.-...+-++|..+...++.        +.+. +...+..+++.+|+.++..|..=... .++....-.+.-+
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            999998888888888888888776652        3455 66666667889999888877643322 1111011112223


Q ss_pred             HHHHHHhhhcCCccchHHHHHHHhHhhc-CChHHHHHHHhhCchHHHHHhhc-----CCChhhHHHHHH----HHHHHhh
Q psy12594        294 LDGLLRLIDCNGGYNSLPAIMALGYMSA-QSEQIAEQIIELQGVGSLQTILQ-----CPHKEQLQVAAA----WTLGQIG  363 (542)
Q Consensus       294 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~~v~~~a~----~~L~~l~  363 (542)
                      +..+...|.+....--...+.+|..+-. ......+.+     ++.+.+...     ...+.+......    .++--+.
T Consensus       179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS  253 (507)
T 3u0r_A          179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS  253 (507)
T ss_dssp             HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence            4455566644443333333344444432 222223222     223333211     101222222222    2222222


Q ss_pred             cC--ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594        364 KH--SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE  411 (542)
Q Consensus       364 ~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~  411 (542)
                      .+  +......+.+ .++|.+-. +......++.|..-..++..++..++
T Consensus       254 ~~v~StkFv~y~~~-kIlP~l~~-L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          254 KNVHSTRFVTYFCE-QVLPNLGT-LTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             TTBCCHHHHHHHHH-HTGGGTTC-CCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             cCCChHHHHHHHHH-hhccchhh-ccccccchHHHHHHHHHHHHHccCCC
Confidence            22  3344444444 37775433 32222233577777778887776665

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.54  E-value=0.46  Score=44.17  Aligned_cols=156  Identities=8%  Similarity=-0.071  Sum_probs=89.9

Q ss_pred             HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC----ChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594        128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG----ALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELA  202 (542)
Q Consensus       128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g----~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~  202 (542)
                      ..+.+++ ....+.+..++..++-+.. .+.....+.+.+    ++..+...+.+ ..+..+..++++++|+.. ++..+
T Consensus       106 ~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~  182 (304)
T 3ebb_A          106 QILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAGQ  182 (304)
T ss_dssp             HHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHH
T ss_pred             HHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-CchhH
Confidence            4444444 3333444445554444433 333333333221    12233444443 346779999999999998 55566


Q ss_pred             HHhhhC--CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHh
Q psy12594        203 ESASDC--DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMC  278 (542)
Q Consensus       203 ~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~  278 (542)
                      ..+...  .+++.+...+.+.+..++..++.++.|++.........-....++. +..++... |.+....++-+|++|.
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~  262 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI  262 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            655532  2344555555567889999999999999863210000001112444 45555443 8999999999999999


Q ss_pred             cCChHHHH
Q psy12594        279 KHNLRLAN  286 (542)
Q Consensus       279 ~~~~~~~~  286 (542)
                      ..+.+..+
T Consensus       263 ~~~~~~~~  270 (304)
T 3ebb_A          263 SDDSNAVQ  270 (304)
T ss_dssp             TTCHHHHH
T ss_pred             hCChhHHH
Confidence            76655444

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.25  E-value=0.45  Score=53.80  Aligned_cols=257  Identities=14%  Similarity=0.134  Sum_probs=141.2

Q ss_pred             cCCChHHHHHHHHHHHHhHccC----ChHHHHHHHhcCcHHHHHHhhc---cCCHHHHHHHHHHHHHHhcCC-hhhhhHh
Q psy12594         51 ADKVPSIQHAALATLGKLMCAK----HVDIRQEVLERNLVALVLKDLT---KQNKHYKKTALHMLTCVAQQD-ERCAGLI  122 (542)
Q Consensus        51 ~s~~~~v~~~a~~~L~~l~~~~----~~~~~~~i~~~~~l~~Lv~~L~---~~~~~~~~~a~~~L~~l~~~~-~~~~~~~  122 (542)
                      .+.++.+|..|+..|.+.....    .++.+..+ +...++.+.....   ..++.++...+.++..++... ++..   
T Consensus        57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W---  132 (1204)
T 3a6p_A           57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW---  132 (1204)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC---
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc---
Confidence            4567899999999999887332    13343333 3334444333211   145888888888888887542 1111   


Q ss_pred             hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-------ChHHH----HHHHHc--CChHHHHHhccC-----------
Q psy12594        123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKD-------NKHFA----ERIVQC--GALPPLVQILAS-----------  178 (542)
Q Consensus       123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-------~~~~~----~~i~~~--g~i~~L~~ll~~-----------  178 (542)
                       .+.++.++++++. ++..++.++.+|..++.+       ....+    +.+.+.  .+++.+.++++.           
T Consensus       133 -p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~  210 (1204)
T 3a6p_A          133 -PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD  210 (1204)
T ss_dssp             -TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence             2466778888765 556677788888887642       11111    112211  122333333332           


Q ss_pred             --------CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCC--ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--hHHH
Q psy12594        179 --------PQLSLKHAAAFALDGIVKHSPELAESASDCD--VIPLLIKALNNDEVNVKADAFLCLADIAKDSPS--LAST  246 (542)
Q Consensus       179 --------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~  246 (542)
                              ++..++..++.++.+...--+  ...+.+..  .++.+..++.  +++++..|+.+|..+......  ....
T Consensus       211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~  286 (1204)
T 3a6p_A          211 TSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKP  286 (1204)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGG
T ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHH
Confidence                    123466667777766554222  12233332  6677776665  567999999999999986522  1111


Q ss_pred             HHh---hchHH-HHHhhc--------CCChhHHHHHHHHHHHHhcCChHHHHHHHh----------cCCHHHHHHhhhcC
Q psy12594        247 IAD---GATTL-AVEHLT--------YPHGLVQKNAATLLRDMCKHNLRLANLVVL----------AGGLDGLLRLIDCN  304 (542)
Q Consensus       247 ~~~---~~~i~-L~~lL~--------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~----------~~~i~~Lv~lL~~~  304 (542)
                      +..   ...+. ++..+.        +.+.++.+..+..+..+...   ....+.+          .+.++.++.+..++
T Consensus       287 li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~  363 (1204)
T 3a6p_A          287 LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHP  363 (1204)
T ss_dssp             GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred             HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCc
Confidence            221   11233 444432        11467777888888777631   1111110          13467777778777


Q ss_pred             CccchHHHHHHHhHhh
Q psy12594        305 GGYNSLPAIMALGYMS  320 (542)
Q Consensus       305 ~~~~~~~a~~~L~~l~  320 (542)
                      +..+...++..-..+.
T Consensus       364 ~~~vs~~~l~fW~~ll  379 (1204)
T 3a6p_A          364 SQFLRSSTQMTWGALF  379 (1204)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cHHhHHHHHHHHHHHH
Confidence            6666666555444343

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.04  E-value=0.33  Score=44.99  Aligned_cols=287  Identities=14%  Similarity=0.184  Sum_probs=164.4

Q ss_pred             HHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCChhHHH
Q psy12594        191 LDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPHGLVQK  268 (542)
Q Consensus       191 L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~~~v~~  268 (542)
                      |-|+-.++....+-++...++..+...+.-++.++.+..+..|...+....-+  ..--...+| ++..+. +++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~--~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA--KTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG--TSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh--hccccccchHHHHHhccCCCcceEE
Confidence            45666678888888999999999999999999999999999999987654311  112246788 777776 45899999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc-------cchH-------HHHHHHhHhh-------------c
Q psy12594        269 NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG-------YNSL-------PAIMALGYMS-------------A  321 (542)
Q Consensus       269 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-------~~~~-------~a~~~L~~l~-------------~  321 (542)
                      ...+.|+|...|.....+..+..++++.|...+....+       .-+.       ++++++.|..             .
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            99999999999998777777788998888777654221       2333       4444444432             1


Q ss_pred             CC--hHHHHHHHhhCchHHHHHhhcCCCh-----hhHHHHHHHHHHHhhcCCh---HHH----HHHHHcCChHHHHHHHh
Q psy12594        322 QS--EQIAEQIIELQGVGSLQTILQCPHK-----EQLQVAAAWTLGQIGKHSV---DNV----TALCEENVLSTLLSKIT  387 (542)
Q Consensus       322 ~~--~~~~~~~~~~~~l~~L~~ll~~~~~-----~~v~~~a~~~L~~l~~~~~---~~~----~~l~~~~~l~~L~~ll~  387 (542)
                      +.  ..+.-.+++.++++.|+..|.-+.-     -++|...++...-+.....   +..    ......+.+.++...+.
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s  503 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS  503 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence            11  1223346677888888888876431     2344444444333322110   100    11122345555544432


Q ss_pred             c---CCCC---hHHH----HHHHHHHHHHHhhCCC----------chhhHHhhcC-CCCHHHHHHHHHHHHhhCCCChhh
Q psy12594        388 Q---TCVS---DNLK----SKCKNALNILIPKCEN----------PKELEQMLLG-NVSEELLASILCAFAKILPCDPVA  446 (542)
Q Consensus       388 ~---~~~~---~~v~----~~a~~aL~nl~~~~~~----------i~~L~~lL~~-~~~~~v~~~~l~~l~~ll~~~~~~  446 (542)
                      -   ...+   .+.|    +.+...|..++++||.          +..=..+|++ .-.+.....++..--+++...|-.
T Consensus       504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP~~  583 (619)
T 3c2g_A          504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCPTR  583 (619)
T ss_dssp             HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCTTH
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcccccChHHHHHHHHHHHHHHHhCcch
Confidence            1   0011   1222    3455555556666542          2333345652 224566666666666666655432


Q ss_pred             hhHH-HHhcchHHhhhcCCCCcHHHHHHHHhccCc
Q psy12594        447 RRSF-VTSHCLRKVQEIEPTPEIAPHLKTINACFP  480 (542)
Q Consensus       447 ~~~~-~~~g~~~~l~~l~~~~~~~~a~~~l~~~~~  480 (542)
                      ...- ...+-++.+.+- .|+++.++..-+-+-||
T Consensus       584 Ad~W~i~r~tle~l~NH-sNsDIa~aasSLL~rfP  617 (619)
T 3c2g_A          584 ADIWTIDRPMLEGLTNH-RNSDIAKAANSLLSRFP  617 (619)
T ss_dssp             HHHSCCCHHHHHHHHTC-SSHHHHHHHHHHHTTSC
T ss_pred             hccceechHHHHHHhcC-CCchHHHHHHHHHHhCC
Confidence            2110 112222222222 66777664444433344

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.30  E-value=0.48  Score=43.92  Aligned_cols=132  Identities=11%  Similarity=0.072  Sum_probs=99.5

Q ss_pred             HHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHH
Q psy12594        274 LRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV  353 (542)
Q Consensus       274 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~  353 (542)
                      |.+|..|+.+...-+++.+++..+...+..++.++..+++..|...+.. ...+..-. ...+|.++..+.-++++++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t~L-~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKTPL-ENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTSCC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhccc-cccchHHHHHhccCCCcceEE
Confidence            4456668877777788999999999999999999999999988876543 22221111 156888888887767779999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC----ChH-HHHHHHHHHHHHH
Q psy12594        354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV----SDN-LKSKCKNALNILI  407 (542)
Q Consensus       354 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~----~~~-v~~~a~~aL~nl~  407 (542)
                      .....|+|..++........+..|+++.|...+....+    .+. -|+.||..++|.+
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L  402 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL  402 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence            99999999999888778888899999999998875433    222 3456777777763

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=94.19  E-value=8.4  Score=42.57  Aligned_cols=139  Identities=7%  Similarity=0.040  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHHHHHhcC-ChhhhhHhhcCChHHHHhhhcCC---C--HHHHHHHHHHHHHhhcC---ChHHHHHHHHc
Q psy12594         96 QNKHYKKTALHMLTCVAQQ-DERCAGLIEDKDLDSIISSLHDF---D--PDTRANAALALGGLAKD---NKHFAERIVQC  166 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~---~--~~~~~~a~~~L~~l~~~---~~~~~~~i~~~  166 (542)
                      .+......++++++.++.. .++...-+-..+++.|+.+....   +  +.++...+++++..++-   ++++-+.    
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~----  566 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT----  566 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH----
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH----
Confidence            3578889999999999744 32222222224677777777544   1  33445456778776632   3332222    


Q ss_pred             CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh--CC----ChHHHHHhh----cCCCHHHHHHHHHHHHHH
Q psy12594        167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD--CD----VIPLLIKAL----NNDEVNVKADAFLCLADI  236 (542)
Q Consensus       167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~----~i~~L~~ll----~~~~~~~~~~a~~~L~~l  236 (542)
                       ++..+++.+.++++.++..|+.++..++..   ++..++.  .|    .++.++..+    ..-+++-......+++.+
T Consensus       567 -vl~~L~~~m~~~~~~vq~aA~~af~~i~~~---C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~v  642 (1073)
T 3gjx_A          567 -VVNKLFEFMHETHDGVQDMACDTFIKIAQK---CRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYM  642 (1073)
T ss_dssp             -HHHHHHHHTTCCSTTHHHHHHHHHHHHHHH---TGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---HHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             366788888888899999999999999973   4444432  11    223333222    233566677777888888


Q ss_pred             hcCChh
Q psy12594        237 AKDSPS  242 (542)
Q Consensus       237 ~~~~~~  242 (542)
                      ....+.
T Consensus       643 i~~~p~  648 (1073)
T 3gjx_A          643 IGAQTD  648 (1073)
T ss_dssp             HTTCCC
T ss_pred             HHhCCC
Confidence            776553

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.90  E-value=5.7  Score=44.86  Aligned_cols=286  Identities=14%  Similarity=0.056  Sum_probs=158.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhh--cCCCHHHHHHHHHHHHHhhcC-----ChHHHHHHHHcCC
Q psy12594         96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL--HDFDPDTRANAALALGGLAKD-----NKHFAERIVQCGA  168 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~  168 (542)
                      .+...|..|-..|..+-...         .++..+...|  .+.++.+|..|+..|.+....     +++ .+..++..+
T Consensus        25 ~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e-~k~~Ir~~l   94 (1204)
T 3a6p_A           25 STQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL-EKVYLKNSV   94 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH-HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHHH
Confidence            36778888888887775433         2344444433  345789999999999987632     233 333444444


Q ss_pred             hHHHHHhccC---CCHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh---
Q psy12594        169 LPPLVQILAS---PQLSLKHAAAFALDGIVKHS-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP---  241 (542)
Q Consensus       169 i~~L~~ll~~---~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---  241 (542)
                      +..+......   .+..++...+.++..|+..+ |+     --.+.++.++.++.. ++..++.++.+|..|+++..   
T Consensus        95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~  168 (1204)
T 3a6p_A           95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ  168 (1204)
T ss_dssp             HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence            5555443221   35788888888999888742 11     124667888888865 55667888888888875310   


Q ss_pred             ---hhH-----HHHHh--hchHH-HHHhhcC-------------------CChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594        242 ---SLA-----STIAD--GATTL-AVEHLTY-------------------PHGLVQKNAATLLRDMCKHNLRLANLVVLA  291 (542)
Q Consensus       242 ---~~~-----~~~~~--~~~i~-L~~lL~~-------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~  291 (542)
                         ..+     ..+..  ..+++ +..++..                   .+..+...++.++.+....-+..  .+.+.
T Consensus       169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~--~i~~~  246 (1204)
T 3a6p_A          169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS--HITAE  246 (1204)
T ss_dssp             CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH--HHHTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH--HHHhc
Confidence               011     11111  12333 3444432                   12346666777776555433322  22232


Q ss_pred             C--CHHHHHHhhhcCCccchHHHHHHHhHhhcCC--hHHHHHHHhh---CchHHHHHhhc-------CCChhhHHHHHHH
Q psy12594        292 G--GLDGLLRLIDCNGGYNSLPAIMALGYMSAQS--EQIAEQIIEL---QGVGSLQTILQ-------CPHKEQLQVAAAW  357 (542)
Q Consensus       292 ~--~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~---~~l~~L~~ll~-------~~~~~~v~~~a~~  357 (542)
                      .  .++.+..++.  ++.++..|+.+|..+....  ++....++..   ..+..++....       .+.+.++.+..++
T Consensus       247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~  324 (1204)
T 3a6p_A          247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQ  324 (1204)
T ss_dssp             TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHH
Confidence            2  5666666555  5678999999999998743  2222222211   11233444432       1112456666777


Q ss_pred             HHHHhhcCChHHHHHHHH-----------cCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594        358 TLGQIGKHSVDNVTALCE-----------ENVLSTLLSKITQTCVSDNLKSKCKNALNILI  407 (542)
Q Consensus       358 ~L~~l~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~  407 (542)
                      .+..++.   . ...+++           .+.++.++.++.++  +.++-..+......+.
T Consensus       325 ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll  379 (1204)
T 3a6p_A          325 VLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALF  379 (1204)
T ss_dssp             HHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHH
Confidence            7777652   1 222222           13567777777765  4566666554333343

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.91  E-value=3.5  Score=39.67  Aligned_cols=149  Identities=11%  Similarity=0.142  Sum_probs=98.1

Q ss_pred             HHHHhCCchHHHHhhhc-----------CCChHHHHHHHHHHHHhHccCChHHHH-HHHhcCcHHHHHHhhccCCHHHHH
Q psy12594         35 HFLKDLNVVDLIVPLLA-----------DKVPSIQHAALATLGKLMCAKHVDIRQ-EVLERNLVALVLKDLTKQNKHYKK  102 (542)
Q Consensus        35 ~~l~~~g~i~~L~~lL~-----------s~~~~v~~~a~~~L~~l~~~~~~~~~~-~i~~~~~l~~Lv~~L~~~~~~~~~  102 (542)
                      +.|. .+|+..|+..|.           ..+...+..++.+|+.+.  ++..... .+.....+..+...|.+.++.++.
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm--N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~  180 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM--NNKFGIKTMLETEEGILLLVRAMDPAVPNMMI  180 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT--SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh--cchhhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence            4555 678888888874           224578888999999999  8854444 444557889999999999999999


Q ss_pred             HHHHHHHHHhcCCh--h-hhhHh----------hcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCCh------HHHHH
Q psy12594        103 TALHMLTCVAQQDE--R-CAGLI----------EDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNK------HFAER  162 (542)
Q Consensus       103 ~a~~~L~~l~~~~~--~-~~~~~----------~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~  162 (542)
                      .++.+|..+|..+.  . ...+.          +..-+..++..|.+ .+.+.+..+...+-.+....+      ..+..
T Consensus       181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e  260 (383)
T 3eg5_B          181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE  260 (383)
T ss_dssp             HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999999986553  1 22221          23457778888876 456666665555555554332      23455


Q ss_pred             HHHcCChHHHHHhccC-CCHhHHHHH
Q psy12594        163 IVQCGALPPLVQILAS-PQLSLKHAA  187 (542)
Q Consensus       163 i~~~g~i~~L~~ll~~-~~~~~~~~a  187 (542)
                      +...|+.+.+-+ ++. .++.+..+.
T Consensus       261 f~~~Gl~~il~~-lr~~~~~~L~~Qi  285 (383)
T 3eg5_B          261 LMRLGLHQVLQE-LREIENEDMKVQL  285 (383)
T ss_dssp             HHHTTHHHHHHH-HTTSCCHHHHHHH
T ss_pred             HHHCChHHHHHH-HhcCCChhHHHHH
Confidence            566785555544 554 345554433

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.87  E-value=2  Score=38.18  Aligned_cols=152  Identities=11%  Similarity=0.122  Sum_probs=95.7

Q ss_pred             chHHHHhCCchHHHHhhhcC-----------CChHHHHHHHHHHHHhHccCChHHHHHHH-hcCcHHHHHHhhccCCHHH
Q psy12594         33 TIHFLKDLNVVDLIVPLLAD-----------KVPSIQHAALATLGKLMCAKHVDIRQEVL-ERNLVALVLKDLTKQNKHY  100 (542)
Q Consensus        33 ~~~~l~~~g~i~~L~~lL~s-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~i~-~~~~l~~Lv~~L~~~~~~~  100 (542)
                      -.+.| ..+|+..|+.+|..           .+...+..++.+|+.+.  +.......+. ..+.+..+...|.++++.+
T Consensus        36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm--n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~  112 (233)
T 2f31_A           36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM--NNKFGIKTMLETEEGILLLVRAMDPAVPNM  112 (233)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT--SSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred             HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh--CChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            34455 46788878777742           13567888999999999  8855444444 4568889999999999999


Q ss_pred             HHHHHHHHHHHhcCCh--h-hhhH----------hhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCCh------HHH
Q psy12594        101 KKTALHMLTCVAQQDE--R-CAGL----------IEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNK------HFA  160 (542)
Q Consensus       101 ~~~a~~~L~~l~~~~~--~-~~~~----------~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~------~~~  160 (542)
                      +..++.+|..+|..+.  . ...+          -+..-...+++.++.. +.+.+..+...+-.+....+      ..|
T Consensus       113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR  192 (233)
T 2f31_A          113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR  192 (233)
T ss_dssp             HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            9999999999886543  2 2222          1223566678777743 46666655554444443332      334


Q ss_pred             HHHHHcCChHHHHHhccCCCHhHHHHH
Q psy12594        161 ERIVQCGALPPLVQILASPQLSLKHAA  187 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a  187 (542)
                      ..+...|+.+.+-++=...++.+..+.
T Consensus       193 ~ef~~~Gl~~il~~l~~~~~~~L~~Qi  219 (233)
T 2f31_A          193 SELMRLGLHQVLQELREIENEDMKVQL  219 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHCChHHHHHHHhccCCHHHHHHH
Confidence            555666755544444333445554443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.15  E-value=6.7  Score=37.78  Aligned_cols=150  Identities=11%  Similarity=0.120  Sum_probs=95.8

Q ss_pred             hHHHHhCCchHHHHhhhcC-----------CChHHHHHHHHHHHHhHccCChHHHH-HHHhcCcHHHHHHhhccCCHHHH
Q psy12594         34 IHFLKDLNVVDLIVPLLAD-----------KVPSIQHAALATLGKLMCAKHVDIRQ-EVLERNLVALVLKDLTKQNKHYK  101 (542)
Q Consensus        34 ~~~l~~~g~i~~L~~lL~s-----------~~~~v~~~a~~~L~~l~~~~~~~~~~-~i~~~~~l~~Lv~~L~~~~~~~~  101 (542)
                      ...|. .+|+..|+..|..           .+...+..++.+|+.+.  +...... .+.....+..+...|.+.++.++
T Consensus        41 v~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm--N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r  117 (386)
T 2bnx_A           41 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM--NNKFGIKTMLETEEGILLLVRAMDPAVPNMM  117 (386)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT--SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHH
T ss_pred             HHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh--CCHHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence            34443 5777777777641           13567888999999999  8844444 44455788999999999999999


Q ss_pred             HHHHHHHHHHhcCCh--h-hhhH----------hhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCCh------HHHH
Q psy12594        102 KTALHMLTCVAQQDE--R-CAGL----------IEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNK------HFAE  161 (542)
Q Consensus       102 ~~a~~~L~~l~~~~~--~-~~~~----------~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~------~~~~  161 (542)
                      ..++.+|..+|..+.  . ...+          .+..-+..++..+... +.+.+..+...+-.+....+      ..|.
T Consensus       118 ~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~  197 (386)
T 2bnx_A          118 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS  197 (386)
T ss_dssp             HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            999999999886543  2 2222          1233566688888643 46666655555545554333      3455


Q ss_pred             HHHHcCChHHHHHhccC-CCHhHHHHH
Q psy12594        162 RIVQCGALPPLVQILAS-PQLSLKHAA  187 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~-~~~~~~~~a  187 (542)
                      .+...|+.+.+ .-++. .++.+....
T Consensus       198 Ef~~~GL~~il-~~Lr~~~~~~L~~Qi  223 (386)
T 2bnx_A          198 ELMRLGLHQVL-QELREIENEDMKVQL  223 (386)
T ss_dssp             HHHHTTHHHHH-HHHTTCCCHHHHHHH
T ss_pred             HHHHCChHHHH-HHHhccCChhHHHHH
Confidence            66677855554 44444 456555543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=89.36  E-value=16  Score=35.12  Aligned_cols=166  Identities=14%  Similarity=0.178  Sum_probs=105.5

Q ss_pred             HHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-----------CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChH
Q psy12594         61 ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-----------QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLD  128 (542)
Q Consensus        61 a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~  128 (542)
                      .+..|..-...........|. .+++..|+..|..           .+...+..++.+|..+......... +-....+.
T Consensus        87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~  165 (383)
T 3eg5_B           87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL  165 (383)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHH
Confidence            344444433223345556665 6778888888752           2347788899999999877666666 45567899


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHhhcCCh-HH-HHHHH----------HcCChHHHHHhccC-CCHhHHHHHHHHHHHHh
Q psy12594        129 SIISSLHDFDPDTRANAALALGGLAKDNK-HF-AERIV----------QCGALPPLVQILAS-PQLSLKHAAAFALDGIV  195 (542)
Q Consensus       129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~i~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~  195 (542)
                      .++..+.+..+.++..++..|..++.... .. .+.++          +..-...++..++. .+.+.+..++..+-.+.
T Consensus       166 ~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li  245 (383)
T 3eg5_B          166 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  245 (383)
T ss_dssp             HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999998885442 11 22222          22446778888886 45777776666655555


Q ss_pred             cCCH--H----HHHHhhhCCChHHHHHhhcCCCHHHHH
Q psy12594        196 KHSP--E----LAESASDCDVIPLLIKALNNDEVNVKA  227 (542)
Q Consensus       196 ~~~~--~----~~~~~~~~~~i~~L~~ll~~~~~~~~~  227 (542)
                      ...+  +    .+..+...|..+.+-.+=...++++..
T Consensus       246 ~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          246 TPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  283 (383)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence            5332  2    233445566666666543334555443

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=88.07  E-value=14  Score=35.31  Aligned_cols=106  Identities=13%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh--------
Q psy12594        208 CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC--------  278 (542)
Q Consensus       208 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~--------  278 (542)
                      .++++.++.+..+.+.++|..++..|...+....+..     ..+++ |..+|.+.++.+.+.++.+..++-        
T Consensus        62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~  136 (386)
T 3o2t_A           62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV  136 (386)
T ss_dssp             GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4677889999888999999999999998886544332     35677 888888889999988887766653        


Q ss_pred             cCCh------HHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594        279 KHNL------RLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS  320 (542)
Q Consensus       279 ~~~~------~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  320 (542)
                      .+..      .....+  ...-..++.++.+.+..++..++..+-.+.
T Consensus       137 ~~~~~~~~~e~~W~~m--~~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          137 KSRVISELQEACWDMV--SAMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HC-CCCHHHHHHHHHH--HHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCcchhHHHHHHHH--HHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            2221      111212  123446677777788888888888776654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=87.88  E-value=14  Score=32.65  Aligned_cols=154  Identities=14%  Similarity=0.191  Sum_probs=97.4

Q ss_pred             hHHHHHHHhcCcHHHHHHhhcc----C-------CHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHH
Q psy12594         74 VDIRQEVLERNLVALVLKDLTK----Q-------NKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDT  141 (542)
Q Consensus        74 ~~~~~~i~~~~~l~~Lv~~L~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~  141 (542)
                      ....+.+ ..+++..|+..|..    .       +...+..++.+|..+......... +...+.+..+...|.++++.+
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~  112 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM  112 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            4455555 45677777777652    1       346678889999999877666666 445678999999999999999


Q ss_pred             HHHHHHHHHHhhcCCh-HH-HHHHH----------HcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCH--H----HH
Q psy12594        142 RANAALALGGLAKDNK-HF-AERIV----------QCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSP--E----LA  202 (542)
Q Consensus       142 ~~~a~~~L~~l~~~~~-~~-~~~i~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~--~----~~  202 (542)
                      +..++..|..++..+. .. .+.++          +..-...+++.+++ .+.+.+..++..+-.+....+  +    .+
T Consensus       113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR  192 (233)
T 2f31_A          113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR  192 (233)
T ss_dssp             HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            9999999988885332 11 12221          22345667777774 446777666655555554332  2    23


Q ss_pred             HHhhhCCChHHHHHhhcCCCHHHHHH
Q psy12594        203 ESASDCDVIPLLIKALNNDEVNVKAD  228 (542)
Q Consensus       203 ~~~~~~~~i~~L~~ll~~~~~~~~~~  228 (542)
                      ..+...|..+.+-++-...++++..+
T Consensus       193 ~ef~~~Gl~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          193 SELMRLGLHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHCChHHHHHHHhccCCHHHHHH
Confidence            34455666666655544455555444

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=86.16  E-value=1.9  Score=34.82  Aligned_cols=72  Identities=18%  Similarity=0.165  Sum_probs=59.3

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVA  112 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~  112 (542)
                      .++..+.+-|++.++.++..|+..|..+.....+.....+.....+..++++++..++.++...+..+...+
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~  113 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT  113 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            456677788889999999999999999994444777777777778888888887788999999998888876

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=84.97  E-value=29  Score=33.83  Aligned_cols=237  Identities=12%  Similarity=0.131  Sum_probs=123.9

Q ss_pred             CCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHH
Q psy12594         30 KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHM  107 (542)
Q Consensus        30 ~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~  107 (542)
                      ++......++...+..|+.++.|+|+..|...-..|.++-  .. ...+..+.. ..-..+.+.+.. +...-....+.+
T Consensus       151 ~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY--~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLei  227 (449)
T 2npp_B          151 QPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIY--GKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEI  227 (449)
T ss_dssp             CSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHH--HSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHH
T ss_pred             ChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHH
Confidence            4455667777888899999999999999999888887776  32 222222211 111223333322 111222345556


Q ss_pred             HHHHhcC-----ChhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCH
Q psy12594        108 LTCVAQQ-----DERCAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL  181 (542)
Q Consensus       108 L~~l~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~  181 (542)
                      ++.+..+     .+++..+.    ...|+.+.+... ...-..-..|+..+...++.....+     +..|++.=-..+.
T Consensus       228 lgSIinGfa~PLKeehk~fl----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns  298 (449)
T 2npp_B          228 LGSIINGFALPLKEEHKIFL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHS  298 (449)
T ss_dssp             HHHHHSSCCSSCCHHHHHHH----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCH
T ss_pred             HHHHHhccCCCCcHHHHHHH----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCc
Confidence            6666544     23333322    344555555443 1222233455555555555543333     2223333333332


Q ss_pred             hHHHHHHHHHHHHhcC-CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHH
Q psy12594        182 SLKHAAAFALDGIVKH-SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVE  257 (542)
Q Consensus       182 ~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~  257 (542)
                      .=...-+.-|..+... .+.....+. ......+...+.+++-.|.+.|+....    + +.....+.+  ..++| +..
T Consensus       299 ~KevlFL~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w~----N-~~i~~li~~n~~~IlPii~p  372 (449)
T 2npp_B          299 PKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWN----N-EYIMSLISDNAAKILPIMFP  372 (449)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGG----C-HHHHHHHHTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHC----C-HHHHHHHHhchhhhHHhhHH
Confidence            2222223333344432 222222222 334567778888888888888764432    1 223333322  34566 666


Q ss_pred             hhcC----C-ChhHHHHHHHHHHHHhcCChHH
Q psy12594        258 HLTY----P-HGLVQKNAATLLRDMCKHNLRL  284 (542)
Q Consensus       258 lL~~----~-~~~v~~~a~~~L~~L~~~~~~~  284 (542)
                      -|..    . +..++..+..++..+..-++..
T Consensus       373 ~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~l  404 (449)
T 2npp_B          373 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQKL  404 (449)
T ss_dssp             HHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHH
Confidence            5522    2 7899999999999888777654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=84.57  E-value=2.8  Score=34.80  Aligned_cols=73  Identities=16%  Similarity=0.190  Sum_probs=59.2

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~  113 (542)
                      .++..|.+-|++.++.++..|+..|..+.....+.....+....++..+++++.. .++.++..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            4556677778899999999999999999944447777788777888889888875 678999999888888763

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=84.26  E-value=3.1  Score=33.82  Aligned_cols=73  Identities=15%  Similarity=0.076  Sum_probs=60.5

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~  113 (542)
                      .++..|.+-|++.++.++..|+..|-.+.....+.....+....++..|++++..      .++.++..++..+...+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            4566777888899999999999999999954447888888888899999998863      468999999988888763

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=84.19  E-value=30  Score=33.06  Aligned_cols=89  Identities=13%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc
Q psy12594         56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH  135 (542)
Q Consensus        56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~  135 (542)
                      ..+...+.-+..|.-..++..     -.++++.++.+-.+.+.++|++.+.+|...+....+..    ..+++.|..+|+
T Consensus        40 ~~Kl~~L~q~~EL~l~~dpsL-----l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~----~~~l~~L~~LL~  110 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPTL-----LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL----LKLIANLNMLLR  110 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGGG-----GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccCHHH-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHc
Confidence            356666666666551122322     34688899988888899999999999999886443332    245778888888


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q psy12594        136 DFDPDTRANAALALGGLA  153 (542)
Q Consensus       136 ~~~~~~~~~a~~~L~~l~  153 (542)
                      ++++.+...++.+.+++-
T Consensus       111 d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          111 DENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            889988888887777663

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=84.18  E-value=3.3  Score=33.71  Aligned_cols=73  Identities=15%  Similarity=0.094  Sum_probs=60.4

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~  113 (542)
                      .++..|.+-+++.++.++..|+..|..+.....+.....+....++..|++++..      .++.++...+..+...+.
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            3566777888899999999999999999944447788888888899999999863      578999999999888763

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=80.76  E-value=31  Score=30.86  Aligned_cols=126  Identities=11%  Similarity=0.157  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh
Q psy12594        140 DTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL  218 (542)
Q Consensus       140 ~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll  218 (542)
                      +.+...+.-...+.. .++..-..+     ++.++.+..+++.++|...+..+...+...++....+     ++.|..++
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll~~~-----l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~-----l~~L~~Ll   99 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELAEEF-----LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHV-----INVVSMLL   99 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHHHH-----HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHccCHhHHHHH-----HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            455555555555443 234433333     5556666666778888888888888886555444443     47788888


Q ss_pred             cCCCHHHHHHHHHHHHHH--------hcCCh------hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        219 NNDEVNVKADAFLCLADI--------AKDSP------SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       219 ~~~~~~~~~~a~~~L~~l--------~~~~~------~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                      .+.++.+.+.++.+..++        +.+..      ...+.+  ..+-. ++.+..+.+..++..++..+..+
T Consensus       100 ~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m--~~lK~~Il~~~~s~n~gvkl~~iKF~e~v  171 (257)
T 3gs3_A          100 RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNIL--SLIKAQILDMIDNENDGIRTNAIKFLEGV  171 (257)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH--HHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH--HHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence            888888888877766555        33321      122222  23344 77777778888888888877765

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=80.50  E-value=3.9  Score=34.21  Aligned_cols=72  Identities=15%  Similarity=0.106  Sum_probs=58.7

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~  113 (542)
                      ++..|.+-+++.++.++..|+..|-.+...........+....++..|++++..      .+..++..++..+...+.
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            566777888899999999999999999933337777788888899999998862      458999999999888763

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=80.46  E-value=16  Score=33.45  Aligned_cols=133  Identities=13%  Similarity=0.137  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHc--CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh--CCChHHH
Q psy12594        139 PDTRANAALALGGLAKDNKHFAERIVQC--GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD--CDVIPLL  214 (542)
Q Consensus       139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~~i~~L  214 (542)
                      ......|+..|..++. +-.+--.+...  ..+..|+ +....++.+++.|+++++.--+.+|.....+.+  ..++..+
T Consensus        42 ~~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           42 IARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            3345667777777765 33444444442  3333344 334456789999999999999989988777664  2334443


Q ss_pred             HHhhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHh
Q psy12594        215 IKALNN-------DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMC  278 (542)
Q Consensus       215 ~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~  278 (542)
                      ..-|..       ....++..-+.+|..|......+.     ...+. |..++...  ++.++..++..+..+-
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            333321       234566777777777777653232     12334 55555444  7778877777766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	542
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-13
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-06
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-13
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-11
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	0.003
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.002
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-05
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	4e-09
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-07
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	6e-07
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-06
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.004

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 1e-13
 Identities = 43/325 (13%), Positives = 98/325 (30%), Gaps = 29/325 (8%)

Query: 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKH 185
            +   +  L   D   +A  A  +      ++   +++ Q G +  LV +L SP  +++ 
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLA 244
           AAA AL  +V  S          + I   +  L       ++      L +++       
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 245 STIADGATTLAVEHLTYPHGL---------------VQKNAATLLRDMCKHNLRLANLVV 289
             IAD    LA   +    G                V  NA   LR++   +     +  
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 290 LAGGLDGLLRLIDC---NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP 346
            +G +D L+  +         +       +  +   S ++  ++                
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 347 H----------KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLK 396
                       +++            + +      L   + + T L+ + ++     L+
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 397 SKCKNALNILIPKCENPKELEQMLL 421
           +      N+   K      + Q++ 
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIG 327

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 43/421 (10%), Positives = 107/421 (25%), Gaps = 47/421 (11%)

Query: 89  VLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI-EDKDLDSIISSLHDFDPDTRANAAL 147
            ++ L+ Q++ Y+    + +     QDE     + +   +  ++  L   + + +  AA 
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 148 ALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD 207
           AL  L   +        +   +   V +L     +        L   +  + EL E    
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126

Query: 208 CDVIPLLI---------------KALNNDEVNVKADAFLCLADIAKDSPSLASTIA---- 248
             +  L                  +    +  V  +A  CL +++       +       
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186

Query: 249 --------DGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL 300
                         +          +        R   +   R   L   A         
Sbjct: 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246

Query: 301 IDCNGGYNSL---PAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357
             C    +                 + + +  +     + +   ++    K+    A A 
Sbjct: 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG 306

Query: 358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELE 417
            L  +        + + +   L           +        ++  ++L     +P    
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR 366

Query: 418 QMLLGNV----------------SEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQE 461
            M                     SE++L+S       ++   P   + + +S  L  +  
Sbjct: 367 VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN 426

Query: 462 I 462
           +
Sbjct: 427 L 427

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 20/181 (11%), Positives = 46/181 (25%), Gaps = 11/181 (6%)

Query: 22  QTMSAFADKPSTIHFLKDLNVVDLIVPLLA----DKVPSIQHAALATLGKLMCAKHVDIR 77
             +      P    +L   + +   + L+     D        AL  L          + 
Sbjct: 264 CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323

Query: 78  QEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF 137
           Q +  +      +  L +        +   L     +      ++ ++    +   L   
Sbjct: 324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSH 383

Query: 138 DP------DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFA 190
                   D  ++A   +  L       A++      L  ++ +  S        AA   
Sbjct: 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

Query: 191 L 191
           L
Sbjct: 444 L 444

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (171), Expect = 2e-13
 Identities = 54/319 (16%), Positives = 118/319 (36%), Gaps = 14/319 (4%)

Query: 135 HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194
            +     +  AA AL  +A       + +V   A+P  +Q+L +  + +K  A +AL  +
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 189

Query: 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATT 253
              S +  +    C+ +  ++   N+++ ++   A   L+++ +   P    ++   A  
Sbjct: 190 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 249

Query: 254 LAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAI 313
              + +         +A   +  +          V+       L+ L+         PA+
Sbjct: 250 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 309

Query: 314 MALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTAL 373
            A+G +   ++   + +I    + +L+ +L  P KE ++  A WT+  I   + + + A+
Sbjct: 310 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAV 368

Query: 374 CEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQM-----------LLG 422
            + N L   L K+ +       K  C    N      + P  +  +           LL 
Sbjct: 369 IDAN-LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 427

Query: 423 NVSEELLASILCAFAKILP 441
                ++   L A   IL 
Sbjct: 428 IADNRIIEVTLDALENILK 446

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.2 bits (152), Expect = 3e-11
 Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 3/205 (1%)

Query: 125 KDLDSIISSLHDFDPDTRANAALALGG-LAKDNKHFAERIVQCGALPPLVQILASPQLS- 182
           ++L  +   L+  D   + +A +     L+++++   + ++Q G +P LV+ +   Q   
Sbjct: 76  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 135

Query: 183 LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242
           L+  AA+AL  I   +    +   D D +PL I+ L    V VK  A   L ++A DS  
Sbjct: 136 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 195

Query: 243 LASTIADGATTLAVEHLTYPHGL-VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLI 301
               +        +  L   +   + + A   L ++C+      +  V++  L  L +LI
Sbjct: 196 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 255

Query: 302 DCNGGYNSLPAIMALGYMSAQSEQI 326
                   + A  A+ Y+S   ++ 
Sbjct: 256 YSMDTETLVDACWAISYLSDGPQEA 280

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 21/207 (10%), Positives = 54/207 (26%), Gaps = 17/207 (8%)

Query: 320 SAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVL 379
           S +     + +I+   V  L   ++    E LQ+ AAW L  I   +      + + + +
Sbjct: 105 SREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 164

Query: 380 STLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ------------MLLGNVSEE 427
                 +    +        + A+  L     +  +                L  +    
Sbjct: 165 -----PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 219

Query: 428 LLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFV 487
           L+ +     + +           V S  L  + ++  + +    +    A          
Sbjct: 220 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 279

Query: 488 SPHYLEDLINRLDQFNPQKSSNLPDCK 514
           +   + D+             +     
Sbjct: 280 AIQAVIDVRIPKRLVELLSHESTLVQT 306

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 4e-10
 Identities = 51/333 (15%), Positives = 115/333 (34%), Gaps = 8/333 (2%)

Query: 81  LERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSL-HDFD 138
           L    +  + K L  +++     A  M+  +++++     ++     + +I+ ++ +  D
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198
            +T    A  L  L+   +     I + G +P LV++L SP  S+   A   L  ++ H 
Sbjct: 74  VETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS-TIADGATTLAVE 257
                +      +  ++  LN   V   A    CL  +A  +       +A G     V 
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192

Query: 258 HLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG 317
            +            + +  +          +V AGG+  L   +           +  L 
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 318 YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEEN 377
            +S  +     +   ++G+      L       +   AA  L  +  ++  N   +C+  
Sbjct: 253 NLSDAA----TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308

Query: 378 VLSTLLSKITQTCVSDNLKSKCKNALNILIPKC 410
            +  L+  + +    +++      AL  L  + 
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRH 341

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 7e-07
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 21/203 (10%)

Query: 96  QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD 155
             +       H+ +   + +     +     L  ++  LH         A + L      
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD---------------------GI 194
                  + + GA+P LVQ+L       +   +                          I
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445

Query: 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL 254
           +             + IPL ++ L +   N++  A   L ++A+D  +  +  A+GAT  
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505

Query: 255 AVEHLTYPHGLVQKNAATLLRDM 277
             E L   +  V   AA +L  M
Sbjct: 506 LTELLHSRNEGVATYAAAVLFRM 528

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 46/259 (17%), Positives = 101/259 (38%), Gaps = 9/259 (3%)

Query: 127 LDSIISSLHDFDPDTRANAALALGGLA-KDNKHFAERIVQCGALPPLVQILA-SPQLSLK 184
           ++ I+  ++  + +++  A  A   L  ++ +   + I++ G +P  V  L  +    ++
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 185 HAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA 244
             +A+AL  I   + E  ++  D   IP  I  L +   ++   A   L +IA D  +  
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 245 STIAD------GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
             +            LAV  L+       +N    L ++C++      L  +   L  L+
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
           RL+  N       +  A+ Y++    +  E +++ +GV      L    +  +   A   
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGATELPIVTPALRA 253

Query: 359 LGQIGKHSVDNVTALCEEN 377
           +G I   + +    + +  
Sbjct: 254 IGNIVTGTDEQTQKVIDAG 272

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (136), Expect = 3e-09
 Identities = 66/441 (14%), Positives = 137/441 (31%), Gaps = 63/441 (14%)

Query: 43  VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKK 102
           V+ IV  +       Q  A     KL+  +       ++   L+   +  L K +     
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD----- 69

Query: 103 TALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162
                                                  +  +A AL  +A       + 
Sbjct: 70  -----------------------------------CSPIQFESAWALTNIASGTSEQTKA 94

Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
           +V  GA+P  + +LASP   +   A +AL  I        +       I  L+  L   +
Sbjct: 95  VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 154

Query: 223 VNVKADAFLCLADIAK------DSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRD 276
           ++  A  +L              +P+      +      V  L +    V  ++   +  
Sbjct: 155 LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 214

Query: 277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGV 336
           +         +VV  G +  L++L+         PA+ A+G +   +++  +++I+   +
Sbjct: 215 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 274

Query: 337 GSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSD--- 393
               ++L  P    +Q  A WT+  I     D +  +    ++  L+  +++        
Sbjct: 275 AVFPSLLTNPKTN-IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 333

Query: 394 ------NLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKIL------P 441
                 N  S       + +  C   + L   LL     +++  IL A + I        
Sbjct: 334 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMN-LLSAKDTKIIQVILDAISNIFQAAEKLG 392

Query: 442 CDPVARRSFVTSHCLRKVQEI 462
                         L K++ +
Sbjct: 393 ETEKLSIMIEECGGLDKIEAL 413

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 24/188 (12%), Positives = 63/188 (33%), Gaps = 6/188 (3%)

Query: 286 NLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM-SAQSEQIAEQIIELQGVGSLQTILQ 344
           N   +   ++ +++ I+ N   + L A  A   + S + +   + II    +    + L 
Sbjct: 7   NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 66

Query: 345 CPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALN 404
                 +Q  +AW L  I   + +   A+ +   +         + ++       + A+ 
Sbjct: 67  KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF-----ISLLASPHAHISEQAVW 121

Query: 405 ILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEP 464
            L     +      +++ + + + L ++L             R    T   L + +   P
Sbjct: 122 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 181

Query: 465 TPEIAPHL 472
             +    +
Sbjct: 182 PLDAVEQI 189

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 55/409 (13%), Positives = 130/409 (31%), Gaps = 31/409 (7%)

Query: 41  NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHY 100
            VV +I+ LL DK   +Q+ A+  LG L+      +++  +E  +V  +  ++    +  
Sbjct: 45  KVVKMILKLLEDKNGEVQNLAVKCLGPLV----SKVKEYQVE-TIVDTLCTNMLSDKEQL 99

Query: 101 KKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-----DPDTRANAALALGGLA 153
           +  +   L  V  +         +       I   L        D   +  A   +  + 
Sbjct: 100 RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 159

Query: 154 KDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPL 213
                          L  L+  L SP+L+++     AL  +V     +       D+I  
Sbjct: 160 SRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV----DLIEH 214

Query: 214 LIKAL-NNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
           L+  L  ND ++       C+A I++ +        +    L V+        +++    
Sbjct: 215 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 274

Query: 273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
                 +          ++  ++  L+ +  +  YN          M A      +Q  +
Sbjct: 275 AFESFVRR-CPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSD 333

Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVS 392
                  +         +++ AAA  L  +     + +    +       +S    +   
Sbjct: 334 ------DEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT------VSPALISRFK 381

Query: 393 DNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILP 441
           +  ++   +  +  +   +  + ++  L    + E   + L      +P
Sbjct: 382 EREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 430

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 36/314 (11%), Positives = 91/314 (28%), Gaps = 24/314 (7%)

Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHA 186
           + +++  +   D D R  A   L    + +    +   +   +  ++++L      +++ 
Sbjct: 5   ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64

Query: 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL--- 243
           A   L  +V    E         ++  L   + +D+  ++  + + L  +  + P     
Sbjct: 65  AVKCLGPLVSKVKEYQVET----IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 120

Query: 244 ----ASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLR 299
               A+        L           VQ  A  ++ DM      L         L  LL 
Sbjct: 121 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-NFHPSILTCLLP 179

Query: 300 LIDCNGGYNSLPAIMALGY-MSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
            +           I+ALG+ + +    +   +IE      L + L               
Sbjct: 180 QLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIE-----HLLSELSKNDSMSTTRTYIQC 234

Query: 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
           +  I + +   +    E+      +  +     + +     +  +           +   
Sbjct: 235 IAAISRQAGHRIGEYLEK------IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY 288

Query: 419 MLLGNVSEELLASI 432
             +  +    L  +
Sbjct: 289 PHVSTIINICLKYL 302

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 28/207 (13%)

Query: 21   VQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKL--MCAKHV---- 74
            +  + +  +    I     L +  +I+   +     ++ AA   LG +            
Sbjct: 833  LLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFV 892

Query: 75   -------DIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE--------RCA 119
                     RQ +L  +L  ++        K Y +    +L    +  E         C 
Sbjct: 893  LQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECL 952

Query: 120  GLIEDKDLDSIISSLHDF----DPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQ 174
            G +   D ++++  L  +        R++   A+     D  +     +  C  +   ++
Sbjct: 953  GKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNC--IGDFLK 1010

Query: 175  ILASPQLSLKHAAAFALDGIVKHSPEL 201
             L  P L+++  A    +    + P L
Sbjct: 1011 TLEDPDLNVRRVALVTFNSAAHNKPSL 1037

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 4e-09
 Identities = 38/293 (12%), Positives = 89/293 (30%), Gaps = 23/293 (7%)

Query: 11  DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMC 70
           D  +R +       +   ++  T        ++D +V   +             +G L  
Sbjct: 489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548

Query: 71  AKHVDIRQEVLERNLVALVLKDLTKQNKHYKK--TALHMLTCVAQ--------------- 113
           +    + +    + L+  +++         K     L  L+ VA                
Sbjct: 549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 608

Query: 114 --QDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALP 170
              +     L +    ++        D D    A   L GLA+    +  + + +   L 
Sbjct: 609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 668

Query: 171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAF 230
            + Q +      ++ ++   L  + K   +  +     D +P+L   LN + ++V  +A 
Sbjct: 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNAT 727

Query: 231 LCLADIAKDSPSLASTIADGATTLAVEHLTYP--HGLVQKNAATLLRDMCKHN 281
             + +I+                  VE +  P     + +N A  +  +    
Sbjct: 728 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC 780

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 89  VLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALA 148
           +LK+    +   ++T    L  + Q  +    LI       +++ L   D  TR+ + L 
Sbjct: 16  LLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIF------VLTKLKSEDEPTRSLSGLI 69

Query: 149 LGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC 208
           L    K +       V        +  +      ++      +  I              
Sbjct: 70  LKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP---- 125

Query: 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL 243
           D++P L   L++++ N    AF  L  I +DS  +
Sbjct: 126 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 160

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 46/412 (11%), Positives = 119/412 (28%), Gaps = 46/412 (11%)

Query: 69  MCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD 128
                 ++ ++ L  +++ L+ + L       K++ + +L  +A+   +       + + 
Sbjct: 380 ALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 439

Query: 129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAA 188
            +I  L D     R+     L   A               +  L++ +      ++ AA 
Sbjct: 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 499

Query: 189 FALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADI------AKDSPS 242
            A   + + +           ++  L+ A +  +       +  +  +        + P 
Sbjct: 500 SAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE 558

Query: 243 LASTIADGATTLAVEHLTYPHGLVQK-NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLI 301
               +                 L       + +    +         V    ++ + + +
Sbjct: 559 YIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTL 618

Query: 302 DCNGGYNSLPA----------IMALGYMSAQSEQIAEQIIELQGVGSL-QTILQCPHKEQ 350
                 N+ P           I+AL  +S  +E +   I +L    ++   + QC   + 
Sbjct: 619 AQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM 678

Query: 351 LQV--AAAWTLGQIGKHSVDNVTALCE-------ENVLSTLLSKITQTC---------VS 392
            +V  ++   LG + K    +V             N+    +S               + 
Sbjct: 679 PEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG 738

Query: 393 DNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDP 444
             ++      L+ L+     P         N  + LL +      ++    P
Sbjct: 739 IEMQPYIPMVLHQLVEIINRP---------NTPKTLLENTAITIGRLGYVCP 781

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 15/186 (8%)

Query: 11  DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMC 70
           D   R RL  ++ M   A +     F + LN   L +  L D V +I+ AA + L KL+ 
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVDHVYAIREAATSNLKKLVE 470

Query: 71  AKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI 130
                  +E     ++  VL      N  ++ T L  +  +++   +   +     L ++
Sbjct: 471 K----FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKHMLPTV 524

Query: 131 ISSLHDFDPDTRANAALALGGLAK--DNKHFAERIVQCGALPPLVQILASPQLSLKHAAA 188
           +    D   + R N A +L  +    DN      +        L ++     + +K+ A 
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI-----LEKLTQDQDVDVKYFAQ 579

Query: 189 FALDGI 194
            AL  +
Sbjct: 580 EALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 14/226 (6%)

Query: 12  HYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCA 71
                RL  +  +    +        + L     IV L  D    ++ A +  +  L   
Sbjct: 375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLL--PAIVELAEDAKWRVRLAIIEYMPLLAGQ 432

Query: 72  KHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSII 131
               +  E  +  L +L +  L       ++ A   L  + ++  +         +  ++
Sbjct: 433 ----LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVL 486

Query: 132 SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL 191
           +   D +   R      +  L++      + I     LP ++++   P  +++   A +L
Sbjct: 487 AMSGDPNYLHRMTTLFCINVLSE---VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSL 543

Query: 192 DGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237
               K  P L  S    +V P+L K   + +V+VK  A   L  ++
Sbjct: 544 ---QKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 135 HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194
            D     R  A   L  L +    F +       +P ++ +   P    +    F ++ +
Sbjct: 451 VDHVYAIREAATSNLKKLVE---KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507

Query: 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238
            +      +  +   ++P +++   +   NV+ +    L  I  
Sbjct: 508 SEV---CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 11  DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMC 70
           D     R+  +  ++  ++        K +  +  ++ +  D V +++     +L K+  
Sbjct: 491 DPNYLHRMTTLFCINVLSEVCGQDITTKHM--LPTVLRMAGDPVANVRFNVAKSLQKIGP 548

Query: 71  AKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLT 109
                  Q  ++  L  L  +D     K++ + AL +L+
Sbjct: 549 ILDNSTLQSEVKPILEKL-TQDQDVDVKYFAQEALTVLS 586

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 36/254 (14%), Positives = 67/254 (26%), Gaps = 23/254 (9%)

Query: 117 RCAGLIEDK---DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLV 173
           +  GL       + D +   L D +   R ++A  L      +           A+   +
Sbjct: 8   KEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQD-----------AVRLAI 56

Query: 174 QILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCL 233
           +  +      +   AF L  I        +   D     L   ALN+    V+A A    
Sbjct: 57  EFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMALNDKSACVRATAIEST 111

Query: 234 ADIAKDSPSLASTIADGATTLAVEHLTYPHGLV----QKNAATLLRDMCKHNLRLANLVV 289
           A   K +P  +  I + +   A +  T                    +  + L+  N  V
Sbjct: 112 AQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDV 171

Query: 290 LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE 349
                  +      N         M          +    +   +    L  +     K 
Sbjct: 172 RNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN 231

Query: 350 QLQVAAAWTLGQIG 363
            +        G++G
Sbjct: 232 TVYDDIIEAAGELG 245

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 8e-06
 Identities = 31/202 (15%), Positives = 61/202 (30%), Gaps = 19/202 (9%)

Query: 43  VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKK 102
             + +  +   +  +    +     +      +     +E +  A   +     +K Y K
Sbjct: 260 FAITIEAMKSDIDEVALQGIEFWSNVCD----EEMDLAIEASEAAEQGRPPEHTSKFYAK 315

Query: 103 TALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162
            AL  L                  L   ++   + D D   N   A G          E 
Sbjct: 316 GALQYLV---------------PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 360

Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
            +    LP + + + +P    + AA  A   I++              +P LI+ + +  
Sbjct: 361 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS 420

Query: 223 VNVKADAFLCLADIAKDSPSLA 244
           V V+  A   +  I +  P  A
Sbjct: 421 VVVRDTAAWTVGRICELLPEAA 442

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 18/167 (10%)

Query: 126 DLDSIISSLHDFDPDTRANAALALGG-----LAKD-NKHFAERIVQCGALPPLVQILASP 179
            ++++   + D D   R   A  L       L  D ++     +     L  L Q+ A  
Sbjct: 67  PVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADR 126

Query: 180 QLSLKHAA-----AFALDGIVKHS-PELAESASDCDVIPLLIKALNNDEVNVKADAFLC- 232
              ++           L   ++    ++ +  +       L     + E  V+       
Sbjct: 127 DYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL 186

Query: 233 ----LADIAKD-SPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
               L ++  D   ++     + A+  A+  L  P   V+   A  L
Sbjct: 187 RGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIAGRL 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	542
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.74
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.73
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.72
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.67
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.51
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.46
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.46
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.37
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.35
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.22
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.2
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.12
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.09
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.09
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.81
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.47
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.46
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.43
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.57
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.52
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.4
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.31
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.75
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.71
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.56
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	81.16
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	80.32
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	80.18

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-38  Score=324.40  Aligned_cols=397  Identities=15%  Similarity=0.195  Sum_probs=354.9

Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHF  159 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~  159 (542)
                      ...++.++..+.+++...+..++..++++...  .+....+++.|+++.|+++++.. ++.++..|+++|.+++..++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            45788999999999999999999999998643  33344488999999999999854 6889999999999999988888


Q ss_pred             HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594        160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD  239 (542)
Q Consensus       160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  239 (542)
                      ...+.+.|+++.++.++.+++.+++..|+|+|+||+..+++.+..+.+.|+++.|+.++.+.+..+++.++|+|++++..
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence            89999999999999999999999999999999999998899999999999999999999999999999999999999987


Q ss_pred             ChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594        240 SPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY  318 (542)
Q Consensus       240 ~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~  318 (542)
                      ...........++++ ++.++.+.+++++..++|+|.+++.+.++....+.+.++++.++.++.++++.++..++.++++
T Consensus       235 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~n  314 (503)
T d1wa5b_         235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  314 (503)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHH
Confidence            654444455568899 9999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             hhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHH
Q psy12594        319 MSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSK  398 (542)
Q Consensus       319 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~  398 (542)
                      ++.+++.....+++.|+++.|..++.++ ++.++..++|+++|++.+++.....+++.++++.++.++.++  +.+++.+
T Consensus       315 l~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~--~~~v~~~  391 (503)
T d1wa5b_         315 IVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA--EYKTKKE  391 (503)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHH
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC--ChhHHHH
Confidence            9999999999999999999999999885 568999999999999999999999999999999999999987  5699999


Q ss_pred             HHHHHHHHHh-------------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh-----------hhhHHHHhc
Q psy12594        399 CKNALNILIP-------------KCENPKELEQMLLGNVSEELLASILCAFAKILPCDPV-----------ARRSFVTSH  454 (542)
Q Consensus       399 a~~aL~nl~~-------------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~-----------~~~~~~~~g  454 (542)
                      |+|+|+|++.             +.+.+++|+++|. ..|++++..++.+|.+++..+..           ....|.+.|
T Consensus       392 a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~-~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g  470 (503)
T d1wa5b_         392 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG  470 (503)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCC
Confidence            9999999963             2467889999999 99999999999999999864432           234678999


Q ss_pred             chHHhhhcC--CCCcHH-HHHHHHhccCccch
Q psy12594        455 CLRKVQEIE--PTPEIA-PHLKTINACFPNEV  483 (542)
Q Consensus       455 ~~~~l~~l~--~~~~~~-~a~~~l~~~~~~~~  483 (542)
                      |++.|+.++  ++.+++ +|..+|++||++|.
T Consensus       471 ~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~  502 (503)
T d1wa5b_         471 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  502 (503)
T ss_dssp             HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcC
Confidence            999999998  677787 59999999998764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-37  Score=309.81  Aligned_cols=394  Identities=16%  Similarity=0.234  Sum_probs=349.3

Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh--hhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER--CAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHF  159 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~  159 (542)
                      .+.++.+++.+.+++++.+..|+..++++.+...+  ...+++.|++|.|+++|++. +++++..++++|.+++..+++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            45789999999999999999999999998654333  33488999999999999755 5889999999999999988888


Q ss_pred             HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC-----HHHHHHHHHHHH
Q psy12594        160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE-----VNVKADAFLCLA  234 (542)
Q Consensus       160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~  234 (542)
                      +..+++.|+++.++.+++++++++++.|+++|.|++.++++.+..+.+.++++.++.++...+     ......++|++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988989999999999999999998553     456778899999


Q ss_pred             HHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHH
Q psy12594        235 DIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAI  313 (542)
Q Consensus       235 ~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~  313 (542)
                      +++.............++++ +..++.+++++++..++++|.+++.+.+.....+...|+++.++.++.++++.++..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence            99987655555555678899 99999999999999999999999998888888788899999999999999999999999


Q ss_pred             HHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCCh
Q psy12594        314 MALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSD  393 (542)
Q Consensus       314 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~  393 (542)
                      ++|++++.+++.....+++.++++.|..++.+. ++.++..++++|++++.++++....+.+.|+++.++.++.++  +.
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~--~~  328 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DF  328 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS--CH
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc--Ch
Confidence            999999999999999999999999999999985 468999999999999988888899999999999999999987  57


Q ss_pred             HHHHHHHHHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCC------hhhhhHHHHhcch
Q psy12594        394 NLKSKCKNALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCD------PVARRSFVTSHCL  456 (542)
Q Consensus       394 ~v~~~a~~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~------~~~~~~~~~~g~~  456 (542)
                      ++|..|+|+|+|++.           +.+.+++|+.+++ ..|++++..++++|.+++..+      ++.+..+.+.||+
T Consensus       329 ~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~-~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~  407 (434)
T d1q1sc_         329 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  407 (434)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCH
Confidence            999999999999963           3467899999999 999999999999999987532      2345678899999


Q ss_pred             HHhhhcC--CCCcHH-HHHHHHhccCc
Q psy12594        457 RKVQEIE--PTPEIA-PHLKTINACFP  480 (542)
Q Consensus       457 ~~l~~l~--~~~~~~-~a~~~l~~~~~  480 (542)
                      +.|+.++  +|++++ .|..+|++||.
T Consensus       408 ~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         408 DKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            9999998  777777 59999999984

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-36  Score=310.45  Aligned_cols=455  Identities=15%  Similarity=0.131  Sum_probs=390.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH
Q psy12594         14 QRARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK   91 (542)
Q Consensus        14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~   91 (542)
                      ...|..++..+.+++.++..+..+... |+++.|+.+|++ +++.++..|+.+|.+++  .+++.+..+.+.|+++.|+.
T Consensus        31 ~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~--~~~~~~~~i~~~g~i~~Li~  108 (529)
T d1jdha_          31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS--HHREGLLAIFKSGGIPALVK  108 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--TSHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--CCchhHHHHHHCCCHHHHHH
Confidence            446888999999999988888887765 789999999965 67899999999999999  89999999999999999999


Q ss_pred             hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594         92 DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP  170 (542)
Q Consensus        92 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  170 (542)
                      +|+++++.++..++++|.+++.+.+..+. +.+.|+++.|+.+|+++++.++..++++|.+++..++..+..+.+.|+++
T Consensus       109 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  188 (529)
T d1jdha_         109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ  188 (529)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccch
Confidence            99999999999999999999988877777 88999999999999999999999999999999988888899999999999


Q ss_pred             HHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594        171 PLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD  249 (542)
Q Consensus       171 ~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  249 (542)
                      .++.+++..+ ..++..+++++.+++. +++.+..+++.|+++.|..++.+++.+++..+++++.+++.....   ....
T Consensus       189 ~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~---~~~~  264 (529)
T d1jdha_         189 ALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGM  264 (529)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCC
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc---hhhh
Confidence            9999997654 7899999999999998 677888899999999999999999999999999999999865432   2233


Q ss_pred             hchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCCh--
Q psy12594        250 GATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSE--  324 (542)
Q Consensus       250 ~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~--  324 (542)
                      .++++ |+.++.++++.++..++++|++++.+++.....+.+.++++.++..+..  +++.++..++++|.+++....  
T Consensus       265 ~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~  344 (529)
T d1jdha_         265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA  344 (529)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred             hhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcc
Confidence            57889 9999999999999999999999999888888888899999999998854  445688899999999986543  


Q ss_pred             -HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC------------
Q psy12594        325 -QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV------------  391 (542)
Q Consensus       325 -~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------------  391 (542)
                       .....+...++++.|+.++..+.+..++..+++++.+++. +++....+.+.|+++.|+.++.+...            
T Consensus       345 ~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~  423 (529)
T d1jdha_         345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             hhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcch-hhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhh
Confidence             2445567789999999999987667788899999999954 56778889999999999999986421            


Q ss_pred             --------ChHHHHHHHHHHHHHH---------hhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhc
Q psy12594        392 --------SDNLKSKCKNALNILI---------PKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSH  454 (542)
Q Consensus       392 --------~~~v~~~a~~aL~nl~---------~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g  454 (542)
                              .+++.+.++.+|.++.         ...+.+++|+++|. +.++++...++++|.++.. +++.++.+.+.|
T Consensus       424 ~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g  501 (529)
T d1jdha_         424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG  501 (529)
T ss_dssp             --CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTT
T ss_pred             HHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhC-CCCHHHHHHHHHHHHHHhc-ChhhHHHHHHCC
Confidence                    1245556666776663         34678999999999 8899999999999999864 577788999999


Q ss_pred             chHHhhhcC--CCCcHHH-HHHHHhc
Q psy12594        455 CLRKVQEIE--PTPEIAP-HLKTINA  477 (542)
Q Consensus       455 ~~~~l~~l~--~~~~~~~-a~~~l~~  477 (542)
                      +++.|.++.  .|+.+++ +..+|.+
T Consensus       502 ~~~~L~~Ll~s~n~~v~~~a~~aL~~  527 (529)
T d1jdha_         502 ATAPLTELLHSRNEGVATYAAAVLFR  527 (529)
T ss_dssp             CHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999998  6666764 5555543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-34  Score=291.65  Aligned_cols=396  Identities=16%  Similarity=0.214  Sum_probs=346.7

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      .+.|+.+++.+++++++.+..|+..++++.+.......+.+++.|++|.|+++|++ +++.++..++++|.+++..+++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            46788999999999999999999999999743334446778899999999999975 56889999999999999888777


Q ss_pred             hh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-----HhHHHHHHHHHH
Q psy12594        119 AG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-----LSLKHAAAFALD  192 (542)
Q Consensus       119 ~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~  192 (542)
                      .. +++.|+++.++.+|.++++++++.++++|.+++.+++..+..+.+.|+++.++.++..++     ......+++++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            77 899999999999999999999999999999999989999999999999999999998764     345677889999


Q ss_pred             HHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594        193 GIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAA  271 (542)
Q Consensus       193 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~  271 (542)
                      +++.............++++.+..++.+.+++++..++|++.+++.........+...++++ ++.++.++++.++..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence            99986554444444467789999999999999999999999999998877777788889999 99999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhH
Q psy12594        272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQL  351 (542)
Q Consensus       272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  351 (542)
                      .+|.+++.+++.....+.+.|+++.++.++.++++.++..++++|++++..+++....+.+.++++.++.++.+++ ..+
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~-~~v  330 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKT  330 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC-HHH
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccC-hHH
Confidence            9999999988888888889999999999999999999999999999999999998999999999999999998854 689


Q ss_pred             HHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------------hCCCch
Q psy12594        352 QVAAAWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------------KCENPK  414 (542)
Q Consensus       352 ~~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------------~~~~i~  414 (542)
                      +..|+|+++|++.+ +++....+.+.|+++.|++++..+  +++++..+.++|.++++                +.+.++
T Consensus       331 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~--d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~  408 (434)
T d1q1sc_         331 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD  408 (434)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHH
Confidence            99999999999865 567778889999999999999876  57899999999999853                245566


Q ss_pred             hhHHhhcCCCCHHHHHHHHHHHHhh
Q psy12594        415 ELEQMLLGNVSEELLASILCAFAKI  439 (542)
Q Consensus       415 ~L~~lL~~~~~~~v~~~~l~~l~~l  439 (542)
                      .|..|.. +.++++.+.+...|.+.
T Consensus       409 ~i~~L~~-~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         409 KIEALQR-HENESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHT-CSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHc-CCCHHHHHHHHHHHHHH
Confidence            6666666 77888888888887664

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-34  Score=292.19  Aligned_cols=400  Identities=16%  Similarity=0.211  Sum_probs=351.0

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      ...++.++..+.++++..+..|+..++++.+.......+.+++.|++|.|+++++. .++.++..|+++|.+++.+++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            46788899999999999999999999999854445566788999999999999985 57889999999999999988777


Q ss_pred             hh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        119 AG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       119 ~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      .. +.+.|+++.++.+|.+++.+++..++|+|++++..++..+..+.+.|+++.|+.++.+.++.++..++|+|.|++.+
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence            77 88999999999999999999999999999999998999999999999999999999999999999999999999986


Q ss_pred             CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594        198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD  276 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~  276 (542)
                      ...........++++.|..++.+.+++++..++|+|.+++...++....+.+.++++ ++.++.+++..++..++.++.+
T Consensus       235 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~n  314 (503)
T d1wa5b_         235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  314 (503)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHH
Confidence            544444444578899999999999999999999999999998877788888999999 9999999999999999999999


Q ss_pred             HhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594        277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA  356 (542)
Q Consensus       277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  356 (542)
                      ++.+.+.....+.+.|+++.+..++.++++.++..++++|+|++.+++.....+++.++++.++.++.++. ..++..|+
T Consensus       315 l~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~-~~v~~~a~  393 (503)
T d1wa5b_         315 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEAC  393 (503)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHH
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCC-hhHHHHHH
Confidence            99988888888889999999999999999999999999999999999999999999999999999998854 58999999


Q ss_pred             HHHHHhhcC---ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh---------------------hCCC
Q psy12594        357 WTLGQIGKH---SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP---------------------KCEN  412 (542)
Q Consensus       357 ~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~---------------------~~~~  412 (542)
                      |+|.|++.+   .++....+++.|+++.|+++|...  +.++...+..+|.+++.                     .++.
T Consensus       394 ~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~--d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~  471 (503)
T d1wa5b_         394 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG  471 (503)
T ss_dssp             HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTH
T ss_pred             HHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCC
Confidence            999999853   346678889999999999999876  46888888889888852                     2344


Q ss_pred             chhhHHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594        413 PKELEQMLLGNVSEELLASILCAFAKILPCD  443 (542)
Q Consensus       413 i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~  443 (542)
                      +..|..|.. +.++++...+...|.+....+
T Consensus       472 ~~~i~~Lq~-~~~~~i~~~A~~il~~~f~~~  501 (503)
T d1wa5b_         472 MEKIFNCQQ-NENDKIYEKAYKIIETYFGEE  501 (503)
T ss_dssp             HHHHHGGGG-CSCHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHHHHHcCCc
Confidence            555555555 667788888877777665443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-34  Score=295.72  Aligned_cols=452  Identities=13%  Similarity=0.105  Sum_probs=373.8

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc-CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDER  117 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~-~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~  117 (542)
                      .+.+|.|+.+|+++|+.++..|+.++.+++  .++..+..+... ++++.++++|++ .+++++..++.+|.+++.+.+.
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~--~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~   93 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHH--TSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH--hccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence            588999999999999999999999999999  887666666654 679999999986 5689999999999999865544


Q ss_pred             hhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        118 CAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       118 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      ...+++.|+++.|+.+|++++++++..|+++|.+++.+++..++.+.+.|+++.|+.+++++++.++..++++|.+++..
T Consensus        94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  173 (529)
T d1jdha_          94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh
Confidence            44499999999999999999999999999999999988888889999999999999999999999999999999999998


Q ss_pred             CHHHHHHhhhCCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594        198 SPELAESASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR  275 (542)
Q Consensus       198 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~  275 (542)
                      +++.+..+.+.|+++.++.++.. .+..++..+++++.+++... +.+..+.+.++++ |+.++.+++..++..+++++.
T Consensus       174 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~  252 (529)
T d1jdha_         174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHhcccchhhhhhhhhHHH
Confidence            88888999999999999999974 46789999999999999865 5888889999999 999999999999999999999


Q ss_pred             HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC-ChhhHHHH
Q psy12594        276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP-HKEQLQVA  354 (542)
Q Consensus       276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~  354 (542)
                      +++.......   ...++++.|+.++.++++.++..++++|++++.+++.....+.+.++++.|+.++... ..+.++..
T Consensus       253 ~ls~~~~~~~---~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~  329 (529)
T d1jdha_         253 NLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP  329 (529)
T ss_dssp             HHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hccccccchh---hhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHH
Confidence            9986544321   1247789999999999999999999999999999999888899999999999888543 33678999


Q ss_pred             HHHHHHHhhcCCh---HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh---------hCCCchhhHHhhcC
Q psy12594        355 AAWTLGQIGKHSV---DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP---------KCENPKELEQMLLG  422 (542)
Q Consensus       355 a~~~L~~l~~~~~---~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~---------~~~~i~~L~~lL~~  422 (542)
                      ++++|.+++...+   .....+...++++.++.++..++ +..++..++++|.|+..         +.+.++.|+.+|. 
T Consensus       330 a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~-~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~-  407 (529)
T d1jdha_         330 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV-  407 (529)
T ss_dssp             HHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH-
T ss_pred             HHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccc-hHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHh-
Confidence            9999999986643   24455668899999999998764 56788899999999942         3567888888875 


Q ss_pred             CCC----------------------HHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHH-HHHHHHhc
Q psy12594        423 NVS----------------------EELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIA-PHLKTINA  477 (542)
Q Consensus       423 ~~~----------------------~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~-~a~~~l~~  477 (542)
                      ..+                      .+++..+..++..+. ..+..+..+.+.|+++.|..+.  +++.++ .+...|..
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la-~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~  486 (529)
T d1jdha_         408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE  486 (529)
T ss_dssp             HHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHc-cCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            322                      356667777777765 4677788888999999999987  555566 36777766


Q ss_pred             cCccchh-c-ccCccchHHHHHHHh
Q psy12594        478 CFPNEVI-H-FVSPHYLEDLINRLD  500 (542)
Q Consensus       478 ~~~~~~~-~-~~~~~~~~~~l~~~~  500 (542)
                      +..++.. + ....+..+.+.+.+.
T Consensus       487 L~~~~~~~~~i~~~g~~~~L~~Ll~  511 (529)
T d1jdha_         487 LAQDKEAAEAIEAEGATAPLTELLH  511 (529)
T ss_dssp             HTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HhcChhhHHHHHHCCCHHHHHHHhC
Confidence            6533222 1 223444555555553

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.3e-26  Score=226.94  Aligned_cols=362  Identities=11%  Similarity=0.091  Sum_probs=277.4

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ..||.|+++|++++|++|..|+.+|++++  .+ ++.+..+.+.|++|.|+++|+++++.++..|+++|.+++.++++.+
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~--~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHT--SSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHH--cCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            45899999999999999999999999999  65 8899999999999999999999999999999999999998888887


Q ss_pred             h-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc----------------cCCCH
Q psy12594        120 G-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL----------------ASPQL  181 (542)
Q Consensus       120 ~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll----------------~~~~~  181 (542)
                      . +.+.|+++.++.++.+ .++.++..++++|.+++..... .......| ++.++..+                ...+.
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHHH-HHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            7 8999999999999865 4689999999999999975443 44444444 33333332                33458


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC------HHHHHHHHHHHHH---------------Hh---
Q psy12594        182 SLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE------VNVKADAFLCLAD---------------IA---  237 (542)
Q Consensus       182 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~---------------l~---  237 (542)
                      .++..++++|.+++.........+...|+++.++.++++..      ......+...+.+               +.   
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  237 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence            89999999999999854433334445677898888875211      1111111111111               00   


Q ss_pred             --------------------------------cCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChH
Q psy12594        238 --------------------------------KDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLR  283 (542)
Q Consensus       238 --------------------------------~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~  283 (542)
                                                      .........+...++++ ++.++... ++.++..+.+++.+++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~  317 (457)
T d1xm9a1         238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence                                            01111222334456777 77777665 788999999999999866532


Q ss_pred             -----HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-----hhhHHH
Q psy12594        284 -----LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-----KEQLQV  353 (542)
Q Consensus       284 -----~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----~~~v~~  353 (542)
                           ....+.+.++++.|+.++.++++.++..+++++++++.... ....+ ..++++.++.++....     .++++.
T Consensus       318 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             chHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHHH-HHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                 23334567999999999999999999999999999987644 33333 4478899999986432     357999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       354 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      .++++|.+++.++++.++.+.+.|+++.|+.++.+.+ ++.+++.|+++|+||..+
T Consensus       396 ~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~-~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSA-SPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999998764 578999999999999654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.3e-26  Score=229.08  Aligned_cols=399  Identities=11%  Similarity=0.070  Sum_probs=281.8

Q ss_pred             CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594         84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER  162 (542)
Q Consensus        84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  162 (542)
                      ..+|.|+++|++++++++..|+.+|.++|..+++.+. +.+.|++|.|+++|+++++++|..|+++|.+++.++++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3689999999999999999999999999988878888 999999999999999999999999999999999889999999


Q ss_pred             HHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh---------------cCCCHHHH
Q psy12594        163 IVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL---------------NNDEVNVK  226 (542)
Q Consensus       163 i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll---------------~~~~~~~~  226 (542)
                      +.+.|+++.++.++.. .+++++..++++|.+++... .........+..+.+..++               ...+..++
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            9999999999999876 46889999999999999854 3344444333333222221               33478899


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC------ChhHHHHHHHHHHHHhcCChH-----HHHHHH---hc
Q psy12594        227 ADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP------HGLVQKNAATLLRDMCKHNLR-----LANLVV---LA  291 (542)
Q Consensus       227 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~------~~~v~~~a~~~L~~L~~~~~~-----~~~~~~---~~  291 (542)
                      ..+++++.+++.........+...++++ ++.++.+.      .......+...+.+.......     ......   ..
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence            9999999999988754444555578888 98888643      233344444444443321100     000000   00


Q ss_pred             CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH---
Q psy12594        292 GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD---  368 (542)
Q Consensus       292 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~---  368 (542)
                      .........+............................+...++++.++.++....++.++..+.+++.+++.....   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence            11111111222211112222222222222344444556667788899999888766678899999999999765432   


Q ss_pred             --HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC--------CCchhhHHhhcC-----CCCHHHHHHHH
Q psy12594        369 --NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC--------ENPKELEQMLLG-----NVSEELLASIL  433 (542)
Q Consensus       369 --~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~--------~~i~~L~~lL~~-----~~~~~v~~~~l  433 (542)
                        ....+.+.++++.|+.++.++  +++++..++++|+|+....        +.++.|+.+|..     ..+++++..++
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~  398 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSG--NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC  398 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHhhhcCc--cHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence              233345679999999999887  5799999999999996432        357888888862     22457999999


Q ss_pred             HHHHhhCCCChhhhhHHHHhcchHHhhhcC--C-CCcHH-HHHHHHhccCccchhc
Q psy12594        434 CAFAKILPCDPVARRSFVTSHCLRKVQEIE--P-TPEIA-PHLKTINACFPNEVIH  485 (542)
Q Consensus       434 ~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~-~~~~~-~a~~~l~~~~~~~~~~  485 (542)
                      ++|.++...+++.++.+.+.|+++.|..+.  + +..++ .|...|.++|.+...+
T Consensus       399 ~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            999999998999999999999999999987  3 33455 4899999998766544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.8e-20  Score=169.75  Aligned_cols=200  Identities=14%  Similarity=0.176  Sum_probs=182.2

Q ss_pred             hhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH-hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcC
Q psy12594         48 PLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK-DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDK  125 (542)
Q Consensus        48 ~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g  125 (542)
                      ....+.+.+.+..|+.+|..++  .+.+++..+...|+++.++. +++++++.++..|+.+|++++.+++..+. +.+.|
T Consensus        24 ~~~~~~~~~~~~~Al~~L~~L~--~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          24 EAEQAADQQEREGALELLADLC--ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhhcCCCHHHHHHHHHHHHHHH--cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3344567788999999999999  99888999999999999986 67789999999999999999999888888 88999


Q ss_pred             ChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594        126 DLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES  204 (542)
Q Consensus       126 ~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~  204 (542)
                      +++.|+.++. +.++.++..++++|.+++..++..+..+...|+++.|++++++++..++..++++|.+++..+++.+..
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH
Confidence            9999999996 457999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594        205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD  249 (542)
Q Consensus       205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  249 (542)
                      +.+.|+++.|+.++.++++++++.++++|++|+..++.....+..
T Consensus       182 ~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999999999988766554443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-19  Score=166.99  Aligned_cols=197  Identities=15%  Similarity=0.119  Sum_probs=179.2

Q ss_pred             cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHH
Q psy12594        135 HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ-ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPL  213 (542)
Q Consensus       135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~  213 (542)
                      ...+.+.+..|+.+|.+++. +.+++..+...|+++.++. ++.++++++|..|+++|++++.+++..+..+.+.|++|.
T Consensus        27 ~~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          27 QAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            34467889999999999996 5667888999999999885 778889999999999999999989999999999999999


Q ss_pred             HHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594        214 LIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA  291 (542)
Q Consensus       214 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~  291 (542)
                      |+.++. +.++.++..++++|++++.+.+..+..+...++++ |+.++.++++.++..++++|.+++...+.....+.+.
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            999996 56899999999999999999988888899999999 9999999999999999999999998888888889999


Q ss_pred             CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh
Q psy12594        292 GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE  332 (542)
Q Consensus       292 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  332 (542)
                      |+++.|+.+++++++.++..++++|++|+..++........
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999999988877666554

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.8e-16  Score=162.10  Aligned_cols=399  Identities=10%  Similarity=0.069  Sum_probs=285.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHh
Q psy12594         13 YQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKD   92 (542)
Q Consensus        13 ~~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~   92 (542)
                      ....|..+.+++..++..-..  .......+|.+..+++++++.+|..|+.++..++....++..    ....++.+..+
T Consensus       177 ~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~~  250 (588)
T d1b3ua_         177 TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL----EALVMPTLRQA  250 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH----HHHTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHH----HHHHHHHHHHh
Confidence            334566666777666653221  222356778888888899999999999999998833333221    22367788888


Q ss_pred             hccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHH
Q psy12594         93 LTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN-KHFAERIVQCGALPP  171 (542)
Q Consensus        93 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~  171 (542)
                      +.+.++.+|..++.+|..++..-..  .......++.+..++++.++++|..++..+..++..- ........-..+++.
T Consensus       251 ~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~  328 (588)
T d1b3ua_         251 AEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPC  328 (588)
T ss_dssp             HTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHH
T ss_pred             cccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence            8889999999999999998743111  1333467899999999999999999999999887432 222233333456888


Q ss_pred             HHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594        172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA  251 (542)
Q Consensus       172 L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  251 (542)
                      +...+.+.++.++..++.++..++..-   .........+|.+...+.+.+++++..+..++..+...-. . .. ....
T Consensus       329 l~~~~~d~~~~vr~~~~~~l~~~~~~~---~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~-~-~~-~~~~  402 (588)
T d1b3ua_         329 IKELVSDANQHVKSALASVIMGLSPIL---GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-I-RQ-LSQS  402 (588)
T ss_dssp             HHHHHTCSCHHHHHHHHTTGGGGHHHH---CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-H-HH-HHHH
T ss_pred             HHHhhcCCChHHHHHHHHHHhhhhhcc---chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc-h-hh-hhhH
Confidence            999999999999999988888776421   1111123467999999999999999999988887765421 1 11 1246


Q ss_pred             hHH-HHHhhcCCChhHHHHHHHHHHHHhcCC-hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHH
Q psy12594        252 TTL-AVEHLTYPHGLVQKNAATLLRDMCKHN-LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQ  329 (542)
Q Consensus       252 ~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  329 (542)
                      +++ +..++.+.+..+|..++.++..++..- ++.    ......+.+..++.++...+|..|+++++.++.....   .
T Consensus       403 ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~---~  475 (588)
T d1b3ua_         403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---E  475 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---H
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc---H
Confidence            788 889999999999999999999887421 111    1123456677888888899999999999998753211   1


Q ss_pred             HHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       330 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      .....+++.+..++.+. +...|..++.+++.+....+   .......++|.++.++.++  .++||..++++|..+...
T Consensus       476 ~~~~~i~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp~ll~~~~D~--v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         476 WAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence            12335778888888774 46889999999998854322   2234456899999999987  569999999999999754


Q ss_pred             CC-------CchhhHHhhcCCCCHHHHHHHHHHHHhh
Q psy12594        410 CE-------NPKELEQMLLGNVSEELLASILCAFAKI  439 (542)
Q Consensus       410 ~~-------~i~~L~~lL~~~~~~~v~~~~l~~l~~l  439 (542)
                      .+       ..|.+..+++ +.|.+|+..+..++..+
T Consensus       550 ~~~~~~~~~i~~~l~~L~~-D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         550 LDNSTLQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred             cCcHhHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            32       2455666777 88999999999988765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.1e-16  Score=164.11  Aligned_cols=406  Identities=12%  Similarity=0.069  Sum_probs=289.4

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL  121 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~  121 (542)
                      .++.+..++++.++.+|..|+.+++.++.....+.    .....++.+..+++++++.+|..++.++..++...+..  .
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~  238 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--H
Confidence            46777888899999999999999999993223322    23456778888888899999999999999987543221  1


Q ss_pred             hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH-H
Q psy12594        122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP-E  200 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~-~  200 (542)
                      .....++.+..++++.++.+|..++.+|++++...   ........+++.+..+++++++++|..++.++..++..-. .
T Consensus       239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~  315 (588)
T d1b3ua_         239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV---GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD  315 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH---CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh---hhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence            12236888999999999999999999999987421   1223344668999999999999999999999999886432 2


Q ss_pred             HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594        201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK  279 (542)
Q Consensus       201 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~  279 (542)
                      ......-...++.+...+.+.++.++..++.++..++..-.   .......+++ +..++.+.+++++..++.++..+..
T Consensus       316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~---~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~  392 (588)
T d1b3ua_         316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred             hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc---hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence            22222335677889999999999999999888877764211   1112235678 8899999999999999988887764


Q ss_pred             CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHH
Q psy12594        280 HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTL  359 (542)
Q Consensus       280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  359 (542)
                      .....   -.....++.+...+.+.++.++..++.+++.++..-.   .......+.+.+..++.++ ...+|..|++++
T Consensus       393 ~~~~~---~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L  465 (588)
T d1b3ua_         393 VIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDH-VYAIREAATSNL  465 (588)
T ss_dssp             HSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC---GGGCCHHHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred             hcchh---hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC---hHhHHHHHHHHHHhhccCC-chhHHHHHHHHH
Confidence            32111   1113467888899999999999999999988864210   0112234566677788774 468999999999


Q ss_pred             HHhhcCC-hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-------CCCchhhHHhhcCCCCHHHHHH
Q psy12594        360 GQIGKHS-VDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK-------CENPKELEQMLLGNVSEELLAS  431 (542)
Q Consensus       360 ~~l~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~-------~~~i~~L~~lL~~~~~~~v~~~  431 (542)
                      +.++... ++.    ....+++.+..++.++  +..+|..++.++..+...       ...+|.|..++. +..+.|+..
T Consensus       466 ~~l~~~~~~~~----~~~~i~~~l~~~~~~~--~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~-D~v~nVR~~  538 (588)
T d1b3ua_         466 KKLVEKFGKEW----AHATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG-DPVANVRFN  538 (588)
T ss_dssp             HHHHHHHCHHH----HHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-CSCHHHHHH
T ss_pred             HHHHHHhCcHH----HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence            9996432 221    2234778888888876  458899999988888543       245788999999 888999999


Q ss_pred             HHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHHH-HHHHHh
Q psy12594        432 ILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAP-HLKTIN  476 (542)
Q Consensus       432 ~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~~-a~~~l~  476 (542)
                      ++.+|..+....++   ........+.+..+.  ++.+++. |.+.+.
T Consensus       539 a~~~l~~i~~~~~~---~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~  583 (588)
T d1b3ua_         539 VAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALT  583 (588)
T ss_dssp             HHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc---HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            99999988654432   122333445566665  5555663 444443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=4.9e-12  Score=116.92  Aligned_cols=255  Identities=18%  Similarity=0.077  Sum_probs=196.9

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA  119 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~  119 (542)
                      ......|..+|+++++.+|..|+.+|..+.            ....++.++.+++++++.++..|+.+|..+........
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~------------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~   85 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRG------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   85 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhC------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc
Confidence            455667889999999999999999999887            23467899999999999999999999998864432211


Q ss_pred             hHhhcCChHHH-HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        120 GLIEDKDLDSI-ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       120 ~~~~~g~v~~L-v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                      .     .++.+ ..+++++++.++..++.+|..+....+.....     .++.+...+.++++.++..++.+++.+..  
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            1     12233 34567889999999999999998655443332     36778888899999999999888887653  


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                               ...++.+..++...+..++..+..++..+.....         ...+ ++..+.+.+..++..+..++..+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhhhhhhhhhhhhccccchh
Confidence                     4667889999999999999999999888776654         3455 77788888999999999988766


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW  357 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  357 (542)
                      ..           ...++.|+..+.+  +.++..++.+|+.+..           ...++.|..++...++..++..|..
T Consensus       216 ~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~  271 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAID  271 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHH
Confidence            42           3567788888874  4689999999998742           2578889998988666789988887


Q ss_pred             HHH
Q psy12594        358 TLG  360 (542)
Q Consensus       358 ~L~  360 (542)
                      +|.
T Consensus       272 ~L~  274 (276)
T d1oyza_         272 KLK  274 (276)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=6e-12  Score=116.30  Aligned_cols=257  Identities=17%  Similarity=0.122  Sum_probs=193.2

Q ss_pred             hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594        123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA  202 (542)
Q Consensus       123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~  202 (542)
                      +....+.|+++|+++++.+|..|+.+|..+..  +.         .++.|+++++++++.+|..|+.+|+.+..... ..
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~~---------~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~-~~   84 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG--QD---------AVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-CE   84 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH---------HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-TH
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--Hh---------HHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-cc
Confidence            34567889999999999999999999988753  22         37999999999999999999999999875322 11


Q ss_pred             HHhhhCCChHH-HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594        203 ESASDCDVIPL-LIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH  280 (542)
Q Consensus       203 ~~~~~~~~i~~-L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~  280 (542)
                      ...     ++. +..++.++++.++..++.+|++++...+....     ..++ +...+.+.++.++..++.++..+.  
T Consensus        85 ~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~--  152 (276)
T d1oyza_          85 DNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIN--  152 (276)
T ss_dssp             HHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             cch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcc--
Confidence            111     223 33456788999999999999999876543222     4677 888888889999999888876544  


Q ss_pred             ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHH
Q psy12594        281 NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLG  360 (542)
Q Consensus       281 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  360 (542)
                               +...++.+..++...++.++..+..+++.+......         ..+.+...+.. .+..++..+.++++
T Consensus       153 ---------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~al~  213 (276)
T d1oyza_         153 ---------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQD-KNEEVRIEAIIGLS  213 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred             ---------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhh-hhhhhhhhhccccc
Confidence                     245677888889888888888888888877655443         33345566666 44689999999998


Q ss_pred             HhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHHh
Q psy12594        361 QIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAK  438 (542)
Q Consensus       361 ~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~  438 (542)
                      .+.  .+         .+++.|+..+.++    ++|..++++|+.+.. .+.++.|..+|...+|.+++..++.+|.+
T Consensus       214 ~~~--~~---------~~~~~L~~~l~d~----~vr~~a~~aL~~ig~-~~~~~~L~~~l~~~~d~~vr~~A~~~L~k  275 (276)
T d1oyza_         214 YRK--DK---------RVLSVLCDELKKN----TVYDDIIEAAGELGD-KTLLPVLDTMLYKFDDNEIITSAIDKLKR  275 (276)
T ss_dssp             HTT--CG---------GGHHHHHHHHTSS----SCCHHHHHHHHHHCC-GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             hhh--hh---------hhHHHHHHHhCCh----HHHHHHHHHHHHcCC-HHHHHHHHHHHccCCCHHHHHHHHHHHcc
Confidence            873  33         3678888888754    699999999998863 35789999988733577899999988753

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.3e-12  Score=139.92  Aligned_cols=393  Identities=15%  Similarity=0.115  Sum_probs=247.0

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hH-HHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-hh
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VD-IRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE-RC  118 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~-~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~  118 (542)
                      .++.+...+.++++..|..|+.+|+.++  +. .+ ....+  ...++.++..++++++.+|..++++|++++.... ..
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~--eg~~~~~~~~l--~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~  471 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIA--EGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  471 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHT--TTSHHHHTTTH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSC
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhh--hhHHHHhcccc--hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            3455566677889999999999999998  54 22 21111  2356778888899999999999999999874211 11


Q ss_pred             hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594        119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK-HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH  197 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~  197 (542)
                      ..-.-...++.++..+.+.++.++..|+++|.++..... .....+  ..+++.++..+.......+..+..++..++..
T Consensus       472 ~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         472 PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             HHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence            111234678889999999999999999999999874211 111111  12366778888887777777777777776641


Q ss_pred             CH-HH-HHHhhhCCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCh----hhHHHHHhhchHH-HHH--------hh-
Q psy12594        198 SP-EL-AESASDCDVIPLLIKALNN--DEVNVKADAFLCLADIAKDSP----SLASTIADGATTL-AVE--------HL-  259 (542)
Q Consensus       198 ~~-~~-~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~-L~~--------lL-  259 (542)
                      .. .. ..... ...++.+......  .+.........++..++....    .....+.. .++. +..        .. 
T Consensus       550 ~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~  627 (888)
T d1qbkb_         550 VGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQ  627 (888)
T ss_dssp             HGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred             hhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            10 00 01111 1233555554432  122233344555555543211    11111111 1111 111        11 


Q ss_pred             ----cCCChhHHHHHHHHHHHHhcCC-hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC
Q psy12594        260 ----TYPHGLVQKNAATLLRDMCKHN-LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ  334 (542)
Q Consensus       260 ----~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  334 (542)
                          ...+.++...++.++..+...- +.....+.....++.+...+.+.++.++..|..+++.++..........++ .
T Consensus       628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~  706 (888)
T d1qbkb_         628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-D  706 (888)
T ss_dssp             TTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-H
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-H
Confidence                1225667777777777776432 222333334567888889999999999999999999998765554433333 4


Q ss_pred             chHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC----
Q psy12594        335 GVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC----  410 (542)
Q Consensus       335 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~----  410 (542)
                      +++.+..-+.++ ...++..|+|++|.++....+.....++ .+++.|+.++++++.+..+++.++.+|+.+...+    
T Consensus       707 ~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~  784 (888)
T d1qbkb_         707 FMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV  784 (888)
T ss_dssp             HHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHH
Confidence            677777777663 4589999999999997654433222222 4788999999988767779999999999986432    


Q ss_pred             -----CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594        411 -----ENPKELEQMLLGNVSEELLASILCAFAKILPCDPV  445 (542)
Q Consensus       411 -----~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~  445 (542)
                           .++++++.-|....|.+-...+..++..+++.+|.
T Consensus       785 ~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~  824 (888)
T d1qbkb_         785 APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS  824 (888)
T ss_dssp             GGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGG
T ss_pred             HhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcH
Confidence                 24566676666234555567788888888776654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.1e-11  Score=132.25  Aligned_cols=380  Identities=14%  Similarity=0.127  Sum_probs=240.6

Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHh--CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594         16 ARLCFVQTMSAFADKPSTIHFLKD--LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL   93 (542)
Q Consensus        16 ~r~~~~~~l~~l~~~~~~~~~l~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L   93 (542)
                      .|..++.++..++...  .+.+..  ...+|.++..++++++.+|..|+.+|++++....+..... .-...++.++..+
T Consensus       411 ~reaa~~alg~i~eg~--~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l  487 (888)
T d1qbkb_         411 VKESGILVLGAIAEGC--MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI  487 (888)
T ss_dssp             HHHHHHHHHHHHTTTS--HHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhH--HHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh
Confidence            4666777777776532  222211  3467888899999999999999999999982111111122 1346788889889


Q ss_pred             ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC------ChHHHHHHHHcC
Q psy12594         94 TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD------NKHFAERIVQCG  167 (542)
Q Consensus        94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~------~~~~~~~i~~~g  167 (542)
                      .++++.++..|+++|..++........-.-..+++.++..+...+...+..+..++..++..      .+.....     
T Consensus       488 ~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~-----  562 (888)
T d1qbkb_         488 LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQM-----  562 (888)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHH-----
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHH-----
Confidence            99999999999999999874321111111124667788888887777776666666666521      1222222     


Q ss_pred             ChHHHHHhccC---CCHhHHHHHHHHHHHHhcCC----HHHHHHhhhCCChHHHHHh--------h-----cCCCHHHHH
Q psy12594        168 ALPPLVQILAS---PQLSLKHAAAFALDGIVKHS----PELAESASDCDVIPLLIKA--------L-----NNDEVNVKA  227 (542)
Q Consensus       168 ~i~~L~~ll~~---~~~~~~~~a~~~L~nl~~~~----~~~~~~~~~~~~i~~L~~l--------l-----~~~~~~~~~  227 (542)
                      +++.+.+....   .+. .......++..++...    ......+. ...+..+...        .     ...+.++..
T Consensus       563 l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  640 (888)
T d1qbkb_         563 LMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVY-QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMI  640 (888)
T ss_dssp             HHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHH
T ss_pred             HHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence            24555544432   222 2333444555444311    11111111 0111111111        1     123556777


Q ss_pred             HHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC
Q psy12594        228 DAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG  305 (542)
Q Consensus       228 ~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  305 (542)
                      .++.++..+...- ......+.....++ +...+++.+++++..+..++..++.+.+....... ...++.+...+.++.
T Consensus       641 ~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~  719 (888)
T d1qbkb_         641 VALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEF  719 (888)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGG
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCC
Confidence            7777777776522 23444555566788 88999999999999999999999876544322111 235677888888888


Q ss_pred             ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q psy12594        306 GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS  384 (542)
Q Consensus       306 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~  384 (542)
                      ..++.+|++++|.++....+.....+. .+++.|+.++.+++. ..++++++.++|.++...|+.....++ .+++.++.
T Consensus       720 ~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~-~~~~~~~~  797 (888)
T d1qbkb_         720 ISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQ-QFIRPWCT  797 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGG-GTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHH-HHHHHHHH
Confidence            889999999999998654443333332 578889999987543 568999999999998877764433332 47788888


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        385 KITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       385 ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      .|.... +.+-|..|...++.+++.
T Consensus       798 ~l~~~~-d~~ek~~~~~g~~~~i~~  821 (888)
T d1qbkb_         798 SLRNIR-DNEEKDSAFRGICTMISV  821 (888)
T ss_dssp             HHTTSC-CSHHHHHHHHHHHHHHHH
T ss_pred             HhccCC-CcHHHHHHHHHHHHHHHH
Confidence            887754 346688899999999865

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.2e-10  Score=113.38  Aligned_cols=377  Identities=13%  Similarity=0.074  Sum_probs=227.8

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC--ChHHHHHHHHHHHHhHccCChHHHHHHH----------h
Q psy12594         15 RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK--VPSIQHAALATLGKLMCAKHVDIRQEVL----------E   82 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~~i~----------~   82 (542)
                      ..|..+-+.|..+..+  +.     .+.+..|...+.++  +..+|..|+..|++......+.......          .
T Consensus        15 ~~r~~A~~~L~~~~~~--~~-----~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~   87 (458)
T d1ibrb_          15 LELEAAQKFLERAAVE--NL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANAR   87 (458)
T ss_dssp             HHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHHhc--Cc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHH
Confidence            3455566666655541  00     23455666666443  4689999999998888433332222211          1


Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFA  160 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~  160 (542)
                      ....+.++..+.++++. +..++.++..++....  ..-.-.+.++.++..+.+.  ++..+..++.++..+........
T Consensus        88 ~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~  164 (458)
T d1ibrb_          88 REVKNYVLQTLGTETYR-PSSASQCVAGIACAEI--PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ  164 (458)
T ss_dssp             HHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHG--GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhC--CcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchh
Confidence            23344556666655443 3334445555432210  0001125678888888654  46778888888888774222111


Q ss_pred             HHHHHcCChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594        161 ERIVQCGALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIKALNNDEVNVKADAFLCLADIA  237 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  237 (542)
                      ..-....+++.++..+.++  +..++..++.++.++......... ........+.+...+.+++++++..++.+|..++
T Consensus       165 ~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~  244 (458)
T d1ibrb_         165 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  244 (458)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1111112367777788754  478999999999999875443221 1222334567788888899999999999999998


Q ss_pred             cCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH--------------------HHhcCCHHH
Q psy12594        238 KDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANL--------------------VVLAGGLDG  296 (542)
Q Consensus       238 ~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~--------------------~~~~~~i~~  296 (542)
                      ...+............+ +...+.+.+++++..++..+..++.........                    ......++.
T Consensus       245 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  324 (458)
T d1ibrb_         245 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  324 (458)
T ss_dssp             HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhh
Confidence            76554332222333445 666677788999999999888886432211100                    001123444


Q ss_pred             HHHhhhc-------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC-hH
Q psy12594        297 LLRLIDC-------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS-VD  368 (542)
Q Consensus       297 Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~  368 (542)
                      +...+..       .+..++..+..++..++...++..   . ..+++.+...+.+ ++..+|..|+.+|+.++.+. ++
T Consensus       325 l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s-~~~~~r~aal~~l~~i~~~~~~~  399 (458)
T d1ibrb_         325 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPS  399 (458)
T ss_dssp             HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---H-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTT
T ss_pred             HHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---h-hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCHh
Confidence            4454432       223477888888888775333221   1 1356677777877 45789999999999997543 22


Q ss_pred             HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594        369 NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       369 ~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~  409 (542)
                      .... .-..+++.++..+.++  ++.||..|+|+|+.++..
T Consensus       400 ~~~~-~l~~i~~~l~~~l~d~--~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         400 QLKP-LVIQAMPTLIELMKDP--SVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             TTCT-TTTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Confidence            2111 1235789999999987  579999999999999753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=5.2e-09  Score=112.01  Aligned_cols=423  Identities=15%  Similarity=0.161  Sum_probs=252.7

Q ss_pred             CchhhHHHHHHH-H----HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcC--CChHHHHHHHHHHHHhHccCC
Q psy12594          1 MSRKSVKNSIDH-Y----QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD--KVPSIQHAALATLGKLMCAKH   73 (542)
Q Consensus         1 ~~~~~~~~~~~~-~----~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~   73 (542)
                      ||..++.|.+.. +    ...|..+-+.|.++..+.  .     .+.++.|...+.+  .++.+|..|+..|++......
T Consensus         1 M~~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--~-----~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~   73 (861)
T d2bpta1           1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDN--F-----LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKD   73 (861)
T ss_dssp             CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC--H-----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSS
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--c-----hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhccc
Confidence            888888888765 3    446888888887765421  1     2456667777754  357899999999998873332


Q ss_pred             hHHHHH----HH-------hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCC-HHH
Q psy12594         74 VDIRQE----VL-------ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD-PDT  141 (542)
Q Consensus        74 ~~~~~~----i~-------~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~  141 (542)
                      ......    +.       ...+-..+++.+.++++.++..++.++..++...-....  =...++.|++.+.+.+ ..+
T Consensus        74 ~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--wpeli~~L~~~~~s~~~~~~  151 (861)
T d2bpta1          74 SVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--WPELMKIMVDNTGAEQPENV  151 (861)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--CHHHHHHHHHHTSTTSCHHH
T ss_pred             chhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--hHHHHHHHHHHhcCCCcHHH
Confidence            211111    00       112334567778888999999999999988743211000  0024566777777655 678


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHc--CChHHHHHhccC--CCHhHHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHH
Q psy12594        142 RANAALALGGLAKDNKHFAERIVQC--GALPPLVQILAS--PQLSLKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIK  216 (542)
Q Consensus       142 ~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~  216 (542)
                      +..++.+|..++...+.....+...  .++..+++.+.+  .+..++..++.++.++...-+.... .......++.+..
T Consensus       152 ~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  231 (861)
T d2bpta1         152 KRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCE  231 (861)
T ss_dssp             HHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHH
Confidence            8889999999874332211111100  123334444433  4588999999999998875433211 1111234577888


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh-----
Q psy12594        217 ALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVL-----  290 (542)
Q Consensus       217 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-----  290 (542)
                      .+.+++++++..++.++..++...++........-+.. +.....+.++.++..++..+..++............     
T Consensus       232 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  311 (861)
T d2bpta1         232 ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP  311 (861)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            88899999999999999999875443322222223334 455556678999999998888776443222111111     


Q ss_pred             -----------cCCHHHHHHhhhcCC-------ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHH
Q psy12594        291 -----------AGGLDGLLRLIDCNG-------GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ  352 (542)
Q Consensus       291 -----------~~~i~~Lv~lL~~~~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~  352 (542)
                                 ...++.+...+...+       ...+..+..++..++...++...    ....+.+...+.+ .+...+
T Consensus       312 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~  386 (861)
T d2bpta1         312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL----EPVLEFVEQNITA-DNWRNR  386 (861)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTC-SSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhh----hhhcchhhhhhhh-HHHHHH
Confidence                       123445555554322       23566666677666543222111    0123333444444 456889


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-------CCCchhhHHhhc-C-C
Q psy12594        353 VAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK-------CENPKELEQMLL-G-N  423 (542)
Q Consensus       353 ~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~-------~~~i~~L~~lL~-~-~  423 (542)
                      ..+..+++.+..+.......-.-...++.++..+.++  ++.+|..++|+++.+...       ...++.+...+. . .
T Consensus       387 ~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~  464 (861)
T d2bpta1         387 EAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ  464 (861)
T ss_dssp             HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCc--chhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccc
Confidence            9999999999765543322222234788899999876  579999999999998643       123343333221 1 3


Q ss_pred             CCHHHHHHHHHHHHhh
Q psy12594        424 VSEELLASILCAFAKI  439 (542)
Q Consensus       424 ~~~~v~~~~l~~l~~l  439 (542)
                      .++.+...+++++..+
T Consensus       465 ~~~~~~~~~~~~~~~l  480 (861)
T d2bpta1         465 DHPKVATNCSWTIINL  480 (861)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHH
Confidence            4556666666655544

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.9e-09  Score=104.19  Aligned_cols=296  Identities=17%  Similarity=0.140  Sum_probs=192.4

Q ss_pred             cCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCCh
Q psy12594         83 RNLVALVLKDLTK--QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNK  157 (542)
Q Consensus        83 ~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~  157 (542)
                      .+.++.++..+.+  .+...+..++.++..++........ ......++.++..+.+.  +..++..++.++..+.....
T Consensus       126 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         126 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             cchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            3567778887765  4567788888888887744322211 22234677888888754  47899999999998875443


Q ss_pred             HHH-HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594        158 HFA-ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADI  236 (542)
Q Consensus       158 ~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  236 (542)
                      ... .........+.+..++.+++++++..++.+|..++...++.....+.....+.+...+.+.+++++..++..+..+
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            321 1122223467788888989999999999999999886654433333233345556667788899999999998888


Q ss_pred             hcCChhhH--------------------HHHHhhchHH-HHHhhcCC-------ChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594        237 AKDSPSLA--------------------STIADGATTL-AVEHLTYP-------HGLVQKNAATLLRDMCKHNLRLANLV  288 (542)
Q Consensus       237 ~~~~~~~~--------------------~~~~~~~~i~-L~~lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~  288 (542)
                      +.......                    .......+.+ +...+.+.       +..++..+..++..++...++..   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---  362 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---  362 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---
Confidence            64321110                    0111123444 55544322       34588889999888875433221   


Q ss_pred             HhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh-HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh
Q psy12594        289 VLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE-QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV  367 (542)
Q Consensus       289 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  367 (542)
                      . ...++.+...++++++.+|..|+.+|+.++.+.. ......+ ..+++.++..+.++ ++.+|..|+|+|+.++..-+
T Consensus       363 ~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         363 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHGG
T ss_pred             h-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhh
Confidence            1 2356677888899999999999999999986532 2222222 36889999999985 56999999999999964322


Q ss_pred             HHHHHHHHcCChHHHHHHHh
Q psy12594        368 DNVTALCEENVLSTLLSKIT  387 (542)
Q Consensus       368 ~~~~~l~~~~~l~~L~~ll~  387 (542)
                      +.   ......++.++..|-
T Consensus       440 ~~---~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         440 EA---AINDVYLAPLLQCLI  456 (458)
T ss_dssp             GG---CCSTTTHHHHHHHHH
T ss_pred             cc---cchhhHHHHHHHHHh
Confidence            11   011234566665554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.5e-10  Score=127.71  Aligned_cols=347  Identities=12%  Similarity=0.114  Sum_probs=225.7

Q ss_pred             hHHHHhhhcCCChHHHHHHHHHHHHhHccCC----hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594         43 VDLIVPLLADKVPSIQHAALATLGKLMCAKH----VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC  118 (542)
Q Consensus        43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~----~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~  118 (542)
                      +..|+.-+++.|+++|..|+..|.+......    ++..     ...++.+++.|.++++++|..|+.+|+.+...-++.
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~-----~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~   79 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-----RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY   79 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-----HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh
Confidence            3456666889999999999988887652211    2222     236778999999999999999999999998654322


Q ss_pred             hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChH------HHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHH
Q psy12594        119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKH------FAERIVQCGALPPLVQILAS-PQLSLKHAAAFAL  191 (542)
Q Consensus       119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~------~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L  191 (542)
                      ..   ...++.|+..+.+.+...+..+..+|..+...-+.      .... +-..+++.+...+.. .+..++..++.+|
T Consensus        80 ~~---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~v~~~al~~l  155 (1207)
T d1u6gc_          80 QV---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIM  155 (1207)
T ss_dssp             HH---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred             hH---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            21   13567788878778888888888887776532111      1111 111224445555444 4588999999999


Q ss_pred             HHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCChhHHHH
Q psy12594        192 DGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPHGLVQKN  269 (542)
Q Consensus       192 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~~~v~~~  269 (542)
                      ..+....+...... ...+++.+...+.+++..+|..|+.+|+.++...+..   .. ...++ ++..+. +.+...+..
T Consensus       156 ~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~  230 (1207)
T d1u6gc_         156 ADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRT  230 (1207)
T ss_dssp             HHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTT
T ss_pred             HHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHH
Confidence            88876332111111 1234567777888899999999999999998765321   11 24566 665554 446667777


Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhc-----
Q psy12594        270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQ-----  344 (542)
Q Consensus       270 a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----  344 (542)
                      ++.++..+++..+...... -..+++.+...+.+.++.++..++.++..+....+........ ..++.+...+.     
T Consensus       231 ~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~  308 (1207)
T d1u6gc_         231 YIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNY  308 (1207)
T ss_dssp             HHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC---
T ss_pred             HHHHHHHHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcch
Confidence            8888888886554322110 1357888999999999999999999998887654322111110 11111111111     


Q ss_pred             -------------------------------CCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCCh
Q psy12594        345 -------------------------------CPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSD  393 (542)
Q Consensus       345 -------------------------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~  393 (542)
                                                     ......+|..++.+|..+....++...... ..+++.++..+.+.  ++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~--~~  385 (1207)
T d1u6gc_         309 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER--EE  385 (1207)
T ss_dssp             ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS--SS
T ss_pred             hhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcCC--ch
Confidence                                           111246889999999999877766554443 35889999999876  46


Q ss_pred             HHHHHHHHHHHHHHh
Q psy12594        394 NLKSKCKNALNILIP  408 (542)
Q Consensus       394 ~v~~~a~~aL~nl~~  408 (542)
                      .+|..+..++..+..
T Consensus       386 ~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         386 NVKADVFHAYLSLLK  400 (1207)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999888853

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1e-09  Score=122.57  Aligned_cols=341  Identities=15%  Similarity=0.172  Sum_probs=219.3

Q ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-hhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594         86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDE-RCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV  164 (542)
Q Consensus        86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~  164 (542)
                      +..|++-+.++++++|.+|+.-|.+...... ....-....+++.++++|++.+++||..|+.+|+.+....++..-   
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~---   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV---   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH---
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH---
Confidence            4567777899999999999988887653221 111111224788999999999999999999999999865443211   


Q ss_pred             HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH-----HHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q psy12594        165 QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA-----ESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAK  238 (542)
Q Consensus       165 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~-----~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~  238 (542)
                       ..+++.|+..+.+++...+..+..+|..+...-+...     ...+....++.+...+. ..+..++..++.++..+..
T Consensus        82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence             1247778888888888888888888887754221111     01111122344444444 4478899999999998876


Q ss_pred             CChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHH
Q psy12594        239 DSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMAL  316 (542)
Q Consensus       239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L  316 (542)
                      ..+..... ....+++ ++..+.+++..+|..|+.+|..++...+...    -...++.++..+. +.+...+..++.++
T Consensus       161 ~~g~~l~~-~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~~l  235 (1207)
T d1u6gc_         161 RQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQCI  235 (1207)
T ss_dssp             HTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred             HhhHhhHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            44322111 1235778 8899999999999999999999987654321    1345666676554 44556777888899


Q ss_pred             hHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH----HHHHHHc--C-------------
Q psy12594        317 GYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN----VTALCEE--N-------------  377 (542)
Q Consensus       317 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~----~~~l~~~--~-------------  377 (542)
                      +.++...+....... ..+++.+...+.... +.++..+..++..+....+..    ...++..  .             
T Consensus       236 ~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~  313 (1207)
T d1u6gc_         236 AAISRQAGHRIGEYL-EKIIPLVVKFCNVDD-DELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE  313 (1207)
T ss_dssp             HHHHHHSSGGGTTSC-TTHHHHHHHHHSSCC-TTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------
T ss_pred             HHHHHHcchhhHHHH-HHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhH
Confidence            888765444322221 367888889988854 589999999998887554321    1111100  0             


Q ss_pred             -----------------ChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC---------CCchhhHHhhcCCCCHHHHHH
Q psy12594        378 -----------------VLSTLLSKITQTCVSDNLKSKCKNALNILIPKC---------ENPKELEQMLLGNVSEELLAS  431 (542)
Q Consensus       378 -----------------~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~---------~~i~~L~~lL~~~~~~~v~~~  431 (542)
                                       ..+....-..+  .+..+|..|+.+|..++...         ..++.|...+. +.++.++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~-d~~~~vr~~  390 (1207)
T d1u6gc_         314 DEDENAMDADGGDDDDQGSDDEYSDDDD--MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFK-EREENVKAD  390 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTS-CSSSHHHHH
T ss_pred             HHHHhhhhhhccchhhhhHHHHHhhhhh--hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHH
Confidence                             00001111112  24578999999999887542         33566777777 788888888


Q ss_pred             HHHHHHhhC
Q psy12594        432 ILCAFAKIL  440 (542)
Q Consensus       432 ~l~~l~~ll  440 (542)
                      +..++..++
T Consensus       391 ~~~~l~~l~  399 (1207)
T d1u6gc_         391 VFHAYLSLL  399 (1207)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877776654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.1e-08  Score=109.35  Aligned_cols=384  Identities=14%  Similarity=0.124  Sum_probs=229.5

Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCChhhhh-H
Q psy12594         44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDERCAG-L  121 (542)
Q Consensus        44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~-~  121 (542)
                      ..++..+.++++.+|..++.++..++....+..  .  ....++.|+..+.++ +...+..++.+|..++........ +
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~--wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHG--A--WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--C--CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--c--hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            345566778889999999999999882111211  0  113566677777654 467888899999998855322222 1


Q ss_pred             hh--cCChHHHHhhhc--CCCHHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594        122 IE--DKDLDSIISSLH--DFDPDTRANAALALGGLAKDNKHFAE-RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK  196 (542)
Q Consensus       122 ~~--~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~  196 (542)
                      ..  ...+..++..+.  +.+..++..++.++.++....+.... ......+++.+...+++++++++..+..++..++.
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            11  123444444443  34589999999999988754433211 11122346778888999999999999999999987


Q ss_pred             CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH----------------HhhchHH-HHHhh
Q psy12594        197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI----------------ADGATTL-AVEHL  259 (542)
Q Consensus       197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----------------~~~~~i~-L~~lL  259 (542)
                      ..++........-....+.....+.+++++..++..+..++..........                .-..+++ +...+
T Consensus       254 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l  333 (861)
T d2bpta1         254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL  333 (861)
T ss_dssp             HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544333322212222333455567788999999988888765422111111                1123455 55655


Q ss_pred             cCC-------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh
Q psy12594        260 TYP-------HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE  332 (542)
Q Consensus       260 ~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  332 (542)
                      ...       +...+..+..++..++...+...-    ....+.+...+.+.++..+..++.+++.+..........-.-
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l  409 (861)
T d2bpta1         334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL----EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV  409 (861)
T ss_dssp             TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHHHhhcchhhh----hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Confidence            433       235777777777777643322111    112344556677788889999999999998765443322222


Q ss_pred             hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChH----HHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLS----TLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       333 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~----~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      ...++.+...+.++ ++.+|..++++++.++...+.   .+.....++    .+...+.+   +..++..+++++.++..
T Consensus       410 ~~~l~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~---~~~~~~~~~~~~~~l~~  482 (861)
T d2bpta1         410 HQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAE---SIDPQQHLPGVVQACLIGLQD---HPKVATNCSWTIINLVE  482 (861)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGG---GSCTTTTHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCc-chhhhhHHHHHHHHHHHHhch---hhhhHHhhhhhhHHHHhcccc---ChHHHHHHHHHHHHHHH
Confidence            36788899999885 468999999999998643211   111122233    33333332   46888999999998864


Q ss_pred             hCC---------C----chhhHHhhcC-CCCHHHHHHHHHHHHhhCCC
Q psy12594        409 KCE---------N----PKELEQMLLG-NVSEELLASILCAFAKILPC  442 (542)
Q Consensus       409 ~~~---------~----i~~L~~lL~~-~~~~~v~~~~l~~l~~ll~~  442 (542)
                      ...         .    +..++..... ..+..++..+..++..++..
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~  530 (861)
T d2bpta1         483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY  530 (861)
T ss_dssp             HHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            311         0    2223333321 33445666666666555443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.5e-08  Score=103.07  Aligned_cols=408  Identities=13%  Similarity=0.084  Sum_probs=244.2

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC--ChHHHHHHHHHHHHhHccCChHHHHHH----------Hh
Q psy12594         15 RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK--VPSIQHAALATLGKLMCAKHVDIRQEV----------LE   82 (542)
Q Consensus        15 ~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~~i----------~~   82 (542)
                      ..|..+-+.|.++..+  +.     .|.+..|...+.+.  +..+|..|+..|++.............          .+
T Consensus        16 ~~r~~Ae~~L~~~~~~--~~-----~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k   88 (876)
T d1qgra_          16 LELEAAQKFLERAAVE--NL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANAR   88 (876)
T ss_dssp             HHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHHhc--Ch-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHH
Confidence            3455555555554431  00     25566677766543  468999999999988843322221111          01


Q ss_pred             cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCC-hHH
Q psy12594         83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD--PDTRANAALALGGLAKDN-KHF  159 (542)
Q Consensus        83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~-~~~  159 (542)
                      ...-..++..+.+++. ++..++.++..++..+-....  =.+.++.+.+.+.+++  ..++..++.+|..++..- +..
T Consensus        89 ~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~--Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~  165 (876)
T d1qgra_          89 REVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ  165 (876)
T ss_dssp             HHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccc--cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHH
Confidence            2234566777776553 455567777777643200000  1256788888886654  678888999999887422 221


Q ss_pred             HHHHHHcCChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594        160 AERIVQCGALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIKALNNDEVNVKADAFLCLADI  236 (542)
Q Consensus       160 ~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  236 (542)
                      .... -..+++.+++.+.++  +..++..++.++.+.......... .....-.++.+...+.+++++++..++.+|..+
T Consensus       166 ~~~~-~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l  244 (876)
T d1qgra_         166 LQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI  244 (876)
T ss_dssp             HGGG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1111 113467788888654  478999999999887764432211 111122456777888888999999999999999


Q ss_pred             hcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH--------------------HHhcCCHH
Q psy12594        237 AKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANL--------------------VVLAGGLD  295 (542)
Q Consensus       237 ~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~--------------------~~~~~~i~  295 (542)
                      +...++.........+.+ +...+.+.+++++..++..+..++.........                    ......++
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (876)
T d1qgra_         245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP  324 (876)
T ss_dssp             HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            886654444444445566 667777778888888888777776432221110                    00112334


Q ss_pred             HHHHhhhcC-------CccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH
Q psy12594        296 GLLRLIDCN-------GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD  368 (542)
Q Consensus       296 ~Lv~lL~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  368 (542)
                      .+...+...       +..++..+..++..++.......   . ..+++.+...+.+ ++...+..++.+++.+..+...
T Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~-~~~~~r~~~~~~l~~~~~~~~~  399 (876)
T d1qgra_         325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEP  399 (876)
T ss_dssp             HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCH
T ss_pred             hhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---h-hhhHHHHHHhhcc-chHHHHHHHHHHHHhhhhhhhH
Confidence            444444332       22367777777777664322211   1 1234455566665 4568888999999998765433


Q ss_pred             HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------CCchhhHHhhcC--CCCHHHHHHHHHHHHhh
Q psy12594        369 NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------ENPKELEQMLLG--NVSEELLASILCAFAKI  439 (542)
Q Consensus       369 ~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------~~i~~L~~lL~~--~~~~~v~~~~l~~l~~l  439 (542)
                      ....-.-...++.+...+.++  ++.+|..++|+++.+....       ..++.+...+..  ..++.+...+++++.++
T Consensus       400 ~~~~~~~~~~~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         400 SQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            222222335788888999876  5799999999999997542       223333333221  34667777887777765


Q ss_pred             C
Q psy12594        440 L  440 (542)
Q Consensus       440 l  440 (542)
                      .
T Consensus       478 ~  478 (876)
T d1qgra_         478 A  478 (876)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.8e-08  Score=103.95  Aligned_cols=351  Identities=17%  Similarity=0.130  Sum_probs=218.9

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcC-ChhhhhH
Q psy12594         45 LIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ--NKHYKKTALHMLTCVAQQ-DERCAGL  121 (542)
Q Consensus        45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~-~~~~~~~  121 (542)
                      .++..+.+++. ++..++.++..++....+..    ...+.++.+++.+.++  +..++..++.+|..++.. .++...-
T Consensus        94 ~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~----~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~  168 (876)
T d1qgra_          94 YVLHTLGTETY-RPSSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD  168 (876)
T ss_dssp             HHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG
T ss_pred             HHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcc----ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            45555555443 34445667777762111110    0246788888888653  477888899999998753 2222222


Q ss_pred             hhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594        122 IEDKDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAE-RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS  198 (542)
Q Consensus       122 ~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~  198 (542)
                      ....+++.+++.+.+.+  ..++..++.++.+.......... .....-+++.+...+++++++++..++.+|..++...
T Consensus       169 ~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~  248 (876)
T d1qgra_         169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY  248 (876)
T ss_dssp             GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            22346788888886554  78899999988887643332111 1111123667778888899999999999999999866


Q ss_pred             HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH--------------------HHHhhchHH-HHH
Q psy12594        199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS--------------------TIADGATTL-AVE  257 (542)
Q Consensus       199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--------------------~~~~~~~i~-L~~  257 (542)
                      ++...........+.+...+.+.+.+++..++..+..++........                    ......+++ +..
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  328 (876)
T d1qgra_         249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ  328 (876)
T ss_dssp             GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHH
Confidence            66555555455556677777788888888888887777653221110                    111123444 444


Q ss_pred             hhcCC-------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH
Q psy12594        258 HLTYP-------HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI  330 (542)
Q Consensus       258 lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  330 (542)
                      .+...       +..++..+..++..++...+...   . ...++.+...+.+.++..+..++..++.+..+.......-
T Consensus       329 ~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~  404 (876)
T d1qgra_         329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP  404 (876)
T ss_dssp             HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred             HHHhcccccccccchHHHHHHHHHHHHHHHhhhhh---h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            44332       23477888888887774322211   0 1234556667778888899999999998876544333222


Q ss_pred             HhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594        331 IELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT-ALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP  408 (542)
Q Consensus       331 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~  408 (542)
                      .-...++.+...+.++ ++.++..++|+++.++...+.... ...-...++.+...+.+   ++.++..++|++.++..
T Consensus       405 ~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         405 LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence            3336788888999875 569999999999999754332110 00001133444555543   46899999999999964

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=2.3e-06  Score=81.22  Aligned_cols=351  Identities=12%  Similarity=0.082  Sum_probs=216.1

Q ss_pred             CchHHHHhhhcC-CChHHHHHHHHHHHHhHccCC--hHHHHHHHhcC--cHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy12594         41 NVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKH--VDIRQEVLERN--LVALVLKDLTKQNKHYKKTALHMLTCVAQQD  115 (542)
Q Consensus        41 g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~--~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~  115 (542)
                      .++..++.+|.. ..+++....+..+..|.....  +.....+.+..  ..+.+..++..++......+..++..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            467778888864 567788888888888772111  22222222222  2344555566666667777777778777654


Q ss_pred             hhhhhHhh--cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc--CChHHHHHhccC-------------
Q psy12594        116 ERCAGLIE--DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC--GALPPLVQILAS-------------  178 (542)
Q Consensus       116 ~~~~~~~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll~~-------------  178 (542)
                      .......+  ......+-.+....+...+..++.++..+.. .+.+|..+...  ..++.+++.++.             
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            32222111  1123344444466778888888899988887 57778877543  446666665532             


Q ss_pred             ----CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCC--ChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh-----hHHH
Q psy12594        179 ----PQLSLKHAAAFALDGIVKHSPELAESASDCD--VIPLLIKALN-NDEVNVKADAFLCLADIAKDSPS-----LAST  246 (542)
Q Consensus       179 ----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~-----~~~~  246 (542)
                          ....++..++.++.-|+. +++....+.+..  .++.++.+++ ....++.+.++.+|.|+......     +...
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~  311 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL  311 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence                125789999999999998 677777777553  4888888887 55788999999999999875322     2344


Q ss_pred             HHhhchHHHHHhhcCC---ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC----CccchHHHHHHHhHh
Q psy12594        247 IADGATTLAVEHLTYP---HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN----GGYNSLPAIMALGYM  319 (542)
Q Consensus       247 ~~~~~~i~L~~lL~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~~~~~a~~~L~~l  319 (542)
                      ++..++++++..|...   |+++....-..-..|-.       .+.+---++.-..=+.++    +|..+....|- -|.
T Consensus       312 ~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~-------~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~-EN~  383 (477)
T d1ho8a_         312 LLLGNALPTVQSLSERKYSDEELRQDISNLKEILEN-------EYQELTSFDEYVAELDSKLLCWSPPHVDNGFWS-DNI  383 (477)
T ss_dssp             HHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHH-------HHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHH-HHS
T ss_pred             HHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-------HHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHH-HHH
Confidence            5566667744445443   78776654433222221       011111111111111111    11111111211 111


Q ss_pred             hcCChHHHHHHHhhCchHHHHHhhcC---------CChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCC
Q psy12594        320 SAQSEQIAEQIIELQGVGSLQTILQC---------PHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTC  390 (542)
Q Consensus       320 ~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~  390 (542)
                      ....++      +..++..|+++|.+         +.++.+..-||.-+|.++.+.|.-+..+-+.|+=..+++++.++ 
T Consensus       384 ~kf~e~------~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~-  456 (477)
T d1ho8a_         384 DEFKKD------NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-  456 (477)
T ss_dssp             GGGSSG------GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-
T ss_pred             Hhhccc------chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-
Confidence            111111      12467788888862         23567888999999999999998888887889999999999887 


Q ss_pred             CChHHHHHHHHHHHHHHhh
Q psy12594        391 VSDNLKSKCKNALNILIPK  409 (542)
Q Consensus       391 ~~~~v~~~a~~aL~nl~~~  409 (542)
                       +++||.+|..|+..++.+
T Consensus       457 -d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         457 -DSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             -SHHHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHh
Confidence             579999999999887643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.47  E-value=1.4e-08  Score=78.99  Aligned_cols=109  Identities=14%  Similarity=0.197  Sum_probs=89.4

Q ss_pred             hcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHH
Q psy12594         50 LADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDS  129 (542)
Q Consensus        50 L~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~  129 (542)
                      |+++++.+|..|+.+|+++.             ...++.|+..|.++++.+|..++.+|+++..          .+.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHH
Confidence            45777888888888887765             2357789999999999999999999876542          236789


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHH
Q psy12594        130 IISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD  192 (542)
Q Consensus       130 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  192 (542)
                      |..+|+++++.+|..++++|+.+..  +.         .++.|..+++++++.+|..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~~--~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIGG--ER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHCS--HH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhCc--cc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999999999998853  22         3788889999999999999988774

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.46  E-value=8.1e-09  Score=80.31  Aligned_cols=107  Identities=22%  Similarity=0.275  Sum_probs=87.5

Q ss_pred             hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHH
Q psy12594        134 LHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPL  213 (542)
Q Consensus       134 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~  213 (542)
                      |.++++.+|..|+++|+.+..            ..++.|+..+.++++.+|..|+++|+++..           .+.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence            456777888888887776532            247889999999999999999999998764           234688


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHH
Q psy12594        214 LIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLL  274 (542)
Q Consensus       214 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L  274 (542)
                      |..++.++++.+|..++++|+.+..           ...++ |..++.++++.++..|+.+|
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9999999999999999999998732           24577 88999999999999998876

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=2.2e-05  Score=74.42  Aligned_cols=274  Identities=12%  Similarity=0.076  Sum_probs=177.3

Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594         45 LIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI  122 (542)
Q Consensus        45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  122 (542)
                      ++..++.+++.-+...+...+..++....  .+..+....  ....+-.+...++...+.-++.++..+....+....+.
T Consensus       126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw  203 (477)
T d1ho8a_         126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIW  203 (477)
T ss_dssp             HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHH
Confidence            44555666666777777778888873222  222222222  22222223345778888888888888876653333343


Q ss_pred             --hcCChHHHHhhhcC-----------------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc--CChHHHHHhccCC-C
Q psy12594        123 --EDKDLDSIISSLHD-----------------FDPDTRANAALALGGLAKDNKHFAERIVQC--GALPPLVQILASP-Q  180 (542)
Q Consensus       123 --~~g~v~~Lv~lL~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll~~~-~  180 (542)
                        +...++.+++.|+.                 ....++..++.|++-++. ++.....+.+.  +.++.++++++.. .
T Consensus       204 ~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~K  282 (477)
T d1ho8a_         204 LHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIK  282 (477)
T ss_dssp             TTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCS
T ss_pred             HcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence              33345555555532                 124778899999999987 56666777665  3488899988754 4


Q ss_pred             HhHHHHHHHHHHHHhcCCH-----HHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHH-------h---------
Q psy12594        181 LSLKHAAAFALDGIVKHSP-----ELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADI-------A---------  237 (542)
Q Consensus       181 ~~~~~~a~~~L~nl~~~~~-----~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l-------~---------  237 (542)
                      ..+.+.++.+|.|+.....     .....++..++++.+..+....  |+++.+..-..--.|       +         
T Consensus       283 EKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev  362 (477)
T d1ho8a_         283 EKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAEL  362 (477)
T ss_dssp             HHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            8899999999999986421     1233455566666554444432  666554433221111       1         


Q ss_pred             -----cCChhhH-HHH----------HhhchHH-HHHhhcC----------CChhHHHHHHHHHHHHhcCChHHHHHHHh
Q psy12594        238 -----KDSPSLA-STI----------ADGATTL-AVEHLTY----------PHGLVQKNAATLLRDMCKHNLRLANLVVL  290 (542)
Q Consensus       238 -----~~~~~~~-~~~----------~~~~~i~-L~~lL~~----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~  290 (542)
                           +-+|... +.+          -+..++. |+.+|+.          .|+.+..-||.=++.++++.|.....+.+
T Consensus       363 ~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~  442 (477)
T d1ho8a_         363 DSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK  442 (477)
T ss_dssp             HHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             hcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHH
Confidence                 1111111 111          1135677 9999962          27888999999999999999999888888


Q ss_pred             cCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594        291 AGGLDGLLRLIDCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       291 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  321 (542)
                      -|+=..+.+++.++|++++..|+.++.-+..
T Consensus       443 lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         443 TGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999987754

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.57  E-value=4.8e-05  Score=66.09  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=82.7

Q ss_pred             HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh
Q psy12594         38 KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER  117 (542)
Q Consensus        38 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~  117 (542)
                      ...-.+..|..|++++++.||..|+..|.                   .+.+..++.+++..++..++..+         
T Consensus        63 a~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp-------------------~~~L~~L~~D~d~~VR~~aa~~l---------  114 (233)
T d1lrva_          63 VRYSPVEALTPLIRDSDEVVRRAVAYRLP-------------------REQLSALMFDEDREVRITVADRL---------  114 (233)
T ss_dssp             HTTSCGGGGGGGTTCSSHHHHHHHHTTSC-------------------SGGGGGTTTCSCHHHHHHHHHHS---------
T ss_pred             HhcCCHHHHHHHhcCCCHHHHHHHHHHcC-------------------HHHHHHHhcCCChhHHHHHHhcc---------
Confidence            34455777888889999999988875421                   12344555566666666654322         


Q ss_pred             hhhHhhcCChHHHHhhhcCCCHHHHHHHHHHH-----HHhh-cCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHH
Q psy12594        118 CAGLIEDKDLDSIISSLHDFDPDTRANAALAL-----GGLA-KDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL  191 (542)
Q Consensus       118 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L-----~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L  191 (542)
                              ..+.|..++.++++.+|..++..+     ..+. ..++..+..+...-..+.|..+++++++.++..++..|
T Consensus       115 --------~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         115 --------PLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             --------CTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             --------CHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                    123445555566666665554321     0000 01111222222222234455555555555555544322


Q ss_pred             HHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHH
Q psy12594        192 DGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNA  270 (542)
Q Consensus       192 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a  270 (542)
                      .                  .+.|..++.+++..++..++.                   .+.+ ++..|.+++++|+..+
T Consensus       187 ~------------------~~~L~~l~~D~d~~VR~aaae-------------------~~~~~ll~~L~D~d~~VR~aA  229 (233)
T d1lrva_         187 R------------------GDDLLELLHDPDWTVRLAAVE-------------------HASLEALRELDEPDPEVRLAI  229 (233)
T ss_dssp             C------------------GGGGGGGGGCSSHHHHHHHHH-------------------HSCHHHHHHCCCCCHHHHHHH
T ss_pred             C------------------cHHHHHHHhCCCHHHHHHHHH-------------------hccHHHHHHhCCCCHHHHHHH
Confidence            1                  134455555666666555431                   1223 6666777778887776


Q ss_pred             H
Q psy12594        271 A  271 (542)
Q Consensus       271 ~  271 (542)
                      .
T Consensus       230 ~  230 (233)
T d1lrva_         230 A  230 (233)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.52  E-value=0.0021  Score=59.07  Aligned_cols=202  Identities=13%  Similarity=0.101  Sum_probs=124.1

Q ss_pred             hHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC----ChhHHHHHHHHHHHHhc----
Q psy12594        211 IPLLIKALNNDE--VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP----HGLVQKNAATLLRDMCK----  279 (542)
Q Consensus       211 i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~----  279 (542)
                      +..+.+++.+..  .......++.+.....  | ..      ..+. +..++.+.    ++.++..+.-+++.|..    
T Consensus        90 ~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--P-t~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          90 LLFLKRTLASEQLTSAEATQIVASTLSNQQ--A-TR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--C-CH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHhccCC--C-CH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            455667776553  3333333444433222  2 12      3345 66666653    67787887777776642    


Q ss_pred             CChHHHHHHHhcCCHHHH----HHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC------Chh
Q psy12594        280 HNLRLANLVVLAGGLDGL----LRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP------HKE  349 (542)
Q Consensus       280 ~~~~~~~~~~~~~~i~~L----v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~  349 (542)
                      ..+...     ...++.+    .+.....+......++++|||+..  +         ..++.|..++...      .+.
T Consensus       161 ~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~  224 (336)
T d1lsha1         161 NTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYST  224 (336)
T ss_dssp             TCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCH
T ss_pred             CCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccH
Confidence            221111     1223333    334445666667788999999852  2         3566666666432      235


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHH
Q psy12594        350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELL  429 (542)
Q Consensus       350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~  429 (542)
                      .+|..|.+++.++....+...+        +.++.++.+...+.++|..|..+|...--....+..+...+..+.+.+|.
T Consensus       225 ~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~i~~~l~~E~~~QV~  296 (336)
T d1lsha1         225 RVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVA  296 (336)
T ss_dssp             HHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCcHHHHH
Confidence            7999999999999877765433        66778888877778999999998865311112345555555425677899


Q ss_pred             HHHHHHHHhhCCCChh
Q psy12594        430 ASILCAFAKILPCDPV  445 (542)
Q Consensus       430 ~~~l~~l~~ll~~~~~  445 (542)
                      ..+...|.++.....+
T Consensus       297 sfv~S~l~~la~s~~P  312 (336)
T d1lsha1         297 SFVYSQMRSLSRSSNP  312 (336)
T ss_dssp             HHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHhCCCc
Confidence            9999999998886543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0054  Score=54.13  Aligned_cols=212  Identities=11%  Similarity=0.170  Sum_probs=156.4

Q ss_pred             HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH----HHHHh-hchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594        204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA----STIAD-GATTL-AVEHLTYPHGLVQKNAATLLRDM  277 (542)
Q Consensus       204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~-L~~lL~~~~~~v~~~a~~~L~~L  277 (542)
                      .+...+.+..|+..|..-+-+.|..++.++.++-+.....+    +.+.. ..++. |+....  ++++--.+-..|+.+
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHH
Confidence            34446778889999988899999999999999987654322    33333 33444 444433  566777777778877


Q ss_pred             hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC---chHHHHHhhcCCChhhHHHH
Q psy12594        278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ---GVGSLQTILQCPHKEQLQVA  354 (542)
Q Consensus       278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v~~~  354 (542)
                      .++ +..++.+.....+..+..++..++-++...|..++..+....+.....++..+   +...+..++.++ +--++..
T Consensus       142 ik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRq  219 (330)
T d1upka_         142 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQ  219 (330)
T ss_dssp             HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHH
T ss_pred             Hhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHH
Confidence            755 44555677788899999999999999999999999999888777776766654   566677888775 4578999


Q ss_pred             HHHHHHHhhcCChHHH---HHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhc
Q psy12594        355 AAWTLGQIGKHSVDNV---TALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLL  421 (542)
Q Consensus       355 a~~~L~~l~~~~~~~~---~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~  421 (542)
                      ++..|+.+........   +.+-+...+..++.+|++.  +..+|.+|...+.=++.+..--+++..+|.
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~--sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~  287 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANPNKTQPILDILL  287 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc--hhhHHHHhhhHhhhhhcCCCCCHHHHHHHH
Confidence            9999999975433211   2223456789999999987  579999999998888877655666666665

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.054  Score=57.03  Aligned_cols=412  Identities=11%  Similarity=0.045  Sum_probs=210.8

Q ss_pred             hHHHHHHHHHH--HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC--ChHHHHHHHHHHHHhHccCC-------
Q psy12594          5 SVKNSIDHYQR--ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK--VPSIQHAALATLGKLMCAKH-------   73 (542)
Q Consensus         5 ~~~~~~~~~~~--~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~~l~~~~~-------   73 (542)
                      +|.|.+.+-..  .|+.+-+.|.++..+|         |....|..++.+.  +..+|..|+..|++......       
T Consensus         6 ~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~   76 (959)
T d1wa5c_           6 TVAKFLAESVIASTAKTSERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNH   76 (959)
T ss_dssp             HHHHHHHHTTSGGGHHHHHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHHcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccC
Confidence            44444444322  3677777777776655         5566666676543  46799999999988874321       


Q ss_pred             ---hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-hhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHH
Q psy12594         74 ---VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD-ERCAGLIEDKDLDSIISSLHDFDPDTRANAALAL  149 (542)
Q Consensus        74 ---~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L  149 (542)
                         ++.+..+.     ..++..+.+++..++...+.++..++..+ ++..    .+.++.+++.++++++..+..++.+|
T Consensus        77 ~i~~e~k~~Ik-----~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W----p~ll~~l~~~l~s~~~~~~~~~L~~l  147 (959)
T d1wa5c_          77 LLPANNVELIK-----KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW----PTLLSDLASRLSNDDMVTNKGVLTVA  147 (959)
T ss_dssp             SSCHHHHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHTTCCSSCTTHHHHHHHHH
T ss_pred             CCCHHHHHHHH-----HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc----HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence               23333332     35566666778899999999999887532 1111    25788899999999988888899999


Q ss_pred             HHhhcCC------hHHHHHH--HHcCChHHHHHhc-------cCCC---H------hHHHHHHHHHHHHhcCC-HHHHHH
Q psy12594        150 GGLAKDN------KHFAERI--VQCGALPPLVQIL-------ASPQ---L------SLKHAAAFALDGIVKHS-PELAES  204 (542)
Q Consensus       150 ~~l~~~~------~~~~~~i--~~~g~i~~L~~ll-------~~~~---~------~~~~~a~~~L~nl~~~~-~~~~~~  204 (542)
                      ..++...      ......+  +-....+.+..++       ....   .      .....+..++..+.... ++....
T Consensus       148 ~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (959)
T d1wa5c_         148 HSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED  227 (959)
T ss_dssp             HHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             HHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            8887421      1111111  1112233333333       2211   1      11112222222222211 111111


Q ss_pred             hhhCCChHHHHHhhcCCC---------------HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc----CC-C
Q psy12594        205 ASDCDVIPLLIKALNNDE---------------VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT----YP-H  263 (542)
Q Consensus       205 ~~~~~~i~~L~~ll~~~~---------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~----~~-~  263 (542)
                      .. ....+.+..++....               ..++...+..+..+....++....... ..++ +..++.    .. .
T Consensus       228 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  305 (959)
T d1wa5c_         228 NI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKY  305 (959)
T ss_dssp             TH-HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTS
T ss_pred             HH-HHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhccccc
Confidence            11 112233344443211               235666666776666654433332222 2333 333332    22 4


Q ss_pred             hhHHHHHHHHHHHHhcCChHH--------HHHHHhcCCHHHHHHhhh-------------------c-CCccchHHHHHH
Q psy12594        264 GLVQKNAATLLRDMCKHNLRL--------ANLVVLAGGLDGLLRLID-------------------C-NGGYNSLPAIMA  315 (542)
Q Consensus       264 ~~v~~~a~~~L~~L~~~~~~~--------~~~~~~~~~i~~Lv~lL~-------------------~-~~~~~~~~a~~~  315 (542)
                      +.+...++..+..++......        ...+.. ..+.+...+-.                   . .....+..+...
T Consensus       306 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~-~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~l  384 (959)
T d1wa5c_         306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITE-QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDF  384 (959)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHH-HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH-HHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHH
Confidence            667777777777776543211        111111 11111111100                   0 111245666667


Q ss_pred             HhHhhcCChHHHHHHHhhCchHHHHHhhcCC-ChhhHHHHHHHHHHHhhcCCh------------HHHHHHHHcCChHHH
Q psy12594        316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCP-HKEQLQVAAAWTLGQIGKHSV------------DNVTALCEENVLSTL  382 (542)
Q Consensus       316 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~------------~~~~~l~~~~~l~~L  382 (542)
                      +..++...++.....+..-....+....... .+...+..+..+++.+.....            .....+    ..+.+
T Consensus       385 l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----l~~~v  460 (959)
T d1wa5c_         385 LKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF----FTKEI  460 (959)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH----HHHHT
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHH----HHHHH
Confidence            7777665554333222222222233333332 235567777777877753210            001111    12233


Q ss_pred             HHHHhcCC-CChHHHHHHHHHHHHHHhhC------CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCC
Q psy12594        383 LSKITQTC-VSDNLKSKCKNALNILIPKC------ENPKELEQMLLGNVSEELLASILCAFAKILPC  442 (542)
Q Consensus       383 ~~ll~~~~-~~~~v~~~a~~aL~nl~~~~------~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~  442 (542)
                      ...+.... ....+|..++|+++.+....      ..++.++..|+ +.+..+...++.++..++..
T Consensus       461 ~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~V~~~a~~al~~~~~~  526 (959)
T d1wa5c_         461 APDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQ-TDEYVVYTYAAITIEKILTI  526 (959)
T ss_dssp             HHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHHh
Confidence            33444332 24568999999999876432      23677788888 88888999999999888763

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.31  E-value=0.0045  Score=56.78  Aligned_cols=208  Identities=14%  Similarity=0.171  Sum_probs=125.1

Q ss_pred             CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc----CCHHHHHHHHHHHHHHhc--
Q psy12594         40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK----QNKHYKKTALHMLTCVAQ--  113 (542)
Q Consensus        40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~----~~~~~~~~a~~~L~~l~~--  113 (542)
                      ...+..+..++.+.+-... .|...+..+.....+..       ..+..+.+++.+    .++.++..+...++++..  
T Consensus        87 ~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~-------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~  158 (336)
T d1lsha1          87 SEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATR-------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY  158 (336)
T ss_dssp             HHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCH-------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCH-------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHH
Confidence            4456667777765543222 23444555552122111       133444555543    578888888877777642  


Q ss_pred             --CChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-------CHhH
Q psy12594        114 --QDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-------QLSL  183 (542)
Q Consensus       114 --~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-------~~~~  183 (542)
                        ..+.... ++ ......+.+.....+.+-+..++.+|+|+..  +.         .++.+..++.+.       +..+
T Consensus       159 c~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~---------~i~~l~~~l~~~~~~~~~~~~~v  226 (336)
T d1lsha1         159 CANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN---------SIKKIQRFLPGQGKSLDEYSTRV  226 (336)
T ss_dssp             HTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG---------GHHHHHTTSTTSSSCCCCSCHHH
T ss_pred             hcCCCCCcHHHH-HHHHHHHHHhhcccchHHHHHHHHHHhccCC--Hh---------HHHHHHHHhcccccccccccHHH
Confidence              2222211 11 1122333444556677777788999999863  22         367777777542       4789


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc
Q psy12594        184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT  260 (542)
Q Consensus       184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~  260 (542)
                      |..|+++|.+++...|....        +.+..++.+.  +.++|..|..+|...   .|..       ..+. +...+.
T Consensus       227 R~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~-------~~l~~i~~~l~  288 (336)
T d1lsha1         227 QAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRLR  288 (336)
T ss_dssp             HHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHH
Confidence            99999999999987664322        4455665544  788998888887552   2211       2345 666665


Q ss_pred             CC-ChhHHHHHHHHHHHHhcCC-hHHH
Q psy12594        261 YP-HGLVQKNAATLLRDMCKHN-LRLA  285 (542)
Q Consensus       261 ~~-~~~v~~~a~~~L~~L~~~~-~~~~  285 (542)
                      .. +..|...+...|.+++... |...
T Consensus       289 ~E~~~QV~sfv~S~l~~la~s~~P~~~  315 (336)
T d1lsha1         289 REPNLQVASFVYSQMRSLSRSSNPEFR  315 (336)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTCCSGGGH
T ss_pred             hCcHHHHHHHHHHHHHHHHhCCCcchH
Confidence            44 8999999999999998754 4443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.078  Score=46.60  Aligned_cols=201  Identities=12%  Similarity=0.128  Sum_probs=145.1

Q ss_pred             HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH----HHhhh-CCChHHHHHhhcCCCHHHHHHHHHHHHH
Q psy12594        161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA----ESASD-CDVIPLLIKALNNDEVNVKADAFLCLAD  235 (542)
Q Consensus       161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~----~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~  235 (542)
                      ..+...+.+..|+..|..-+-+.|..++.++.++.+.....+    +.+.. ..++..|+.-..  ++++--.+-..|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHH
Confidence            445556778899999998888999999999999987543322    33332 223344444443  45555566666777


Q ss_pred             HhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc---CCHHHHHHhhhcCCccchHH
Q psy12594        236 IAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA---GGLDGLLRLIDCNGGYNSLP  311 (542)
Q Consensus       236 l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~~i~~Lv~lL~~~~~~~~~~  311 (542)
                      ..++. .....+.....+. +......++-++...|..++..+-...+.........   ..+...-.+|.+++.-.+..
T Consensus       141 cik~e-~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         141 CIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHhhH-HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            77665 4777777777777 9999999999999999999998765555444334433   35677788999999999999


Q ss_pred             HHHHHhHhhcCChHH--H-HHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594        312 AIMALGYMSAQSEQI--A-EQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH  365 (542)
Q Consensus       312 a~~~L~~l~~~~~~~--~-~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  365 (542)
                      ++..||.+.......  . ..+-+..-+..++.+|++.+ ..++.+|-..+--++++
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~s-k~Iq~EAFhVFKvFVAN  275 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVAN  275 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCch-hhHHHHhhhHhhhhhcC
Confidence            999999998543332  2 23444567888999999865 59999999888777765

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.75  E-value=0.0007  Score=58.53  Aligned_cols=63  Identities=14%  Similarity=0.119  Sum_probs=38.9

Q ss_pred             hhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q psy12594         92 DLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP  171 (542)
Q Consensus        92 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  171 (542)
                      .|.++..+++..|+.       +          -.+..|..+++++++.||..++..|.                  .+.
T Consensus        50 ~l~~p~~e~Ra~Aa~-------~----------a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~   94 (233)
T d1lrva_          50 YLADPFWERRAIAVR-------Y----------SPVEALTPLIRDSDEVVRRAVAYRLP------------------REQ   94 (233)
T ss_dssp             GTTCSSHHHHHHHHT-------T----------SCGGGGGGGTTCSSHHHHHHHHTTSC------------------SGG
T ss_pred             HhcCCcHHHHHHHHh-------c----------CCHHHHHHHhcCCCHHHHHHHHHHcC------------------HHH
Confidence            566777788766542       1          23567778888888888888765431                  234


Q ss_pred             HHHhccCCCHhHHHHHHH
Q psy12594        172 LVQILASPQLSLKHAAAF  189 (542)
Q Consensus       172 L~~ll~~~~~~~~~~a~~  189 (542)
                      |..++.+++..++..++.
T Consensus        95 L~~L~~D~d~~VR~~aa~  112 (233)
T d1lrva_          95 LSALMFDEDREVRITVAD  112 (233)
T ss_dssp             GGGTTTCSCHHHHHHHHH
T ss_pred             HHHHhcCCChhHHHHHHh
Confidence            555555555555555543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.29  Score=51.19  Aligned_cols=220  Identities=10%  Similarity=0.044  Sum_probs=116.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhhh-Hh----hcCChHHHH----hhh---cCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594         96 QNKHYKKTALHMLTCVAQQDERCAG-LI----EDKDLDSII----SSL---HDFDPDTRANAALALGGLAKDNKHFAERI  163 (542)
Q Consensus        96 ~~~~~~~~a~~~L~~l~~~~~~~~~-~~----~~g~v~~Lv----~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~i  163 (542)
                      .+...+..+...++.+......... ..    .....+.+.    ..+   ....+.+|..++++++..+.....  ..+
T Consensus       417 ~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~--~~~  494 (959)
T d1wa5c_         417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--AQL  494 (959)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--HHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccH--HHH
Confidence            4567777888888887643211111 00    011222222    223   233478999999999998854322  111


Q ss_pred             HHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH-------HHhhh---CCChHHHHHhhcCCC--HH---HHHH
Q psy12594        164 VQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA-------ESASD---CDVIPLLIKALNNDE--VN---VKAD  228 (542)
Q Consensus       164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~-------~~~~~---~~~i~~L~~ll~~~~--~~---~~~~  228 (542)
                        ..+++.++.+|.+++..++..|++++..++.......       ...+.   ...+..+...+....  ..   ....
T Consensus       495 --~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~  572 (959)
T d1wa5c_         495 --IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (959)
T ss_dssp             --HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             --HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence              2358889999999999999999999999986321110       00010   112233444443221  11   1223


Q ss_pred             HHHHHHHHhcCChhhHHHHHhhchHH-HHHhh----cCC-ChhHHHHHHHHHHHHhcCC-hHHHHHHHhcCCHHHHHHhh
Q psy12594        229 AFLCLADIAKDSPSLASTIADGATTL-AVEHL----TYP-HGLVQKNAATLLRDMCKHN-LRLANLVVLAGGLDGLLRLI  301 (542)
Q Consensus       229 a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL----~~~-~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~Lv~lL  301 (542)
                      +..++..+.....+...... ..+++ +...+    +++ ++.....+..++..+.... ++.... .....+|.+...+
T Consensus       573 ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-l~~~l~p~i~~~~  650 (959)
T d1wa5c_         573 LMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVF  650 (959)
T ss_dssp             HHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHH-HHHHHHHHHHHHH
Confidence            44455544322111111110 12333 33332    333 5677777888888776543 333322 2345677777878


Q ss_pred             hcCCccchHHHHHHHhHhhc
Q psy12594        302 DCNGGYNSLPAIMALGYMSA  321 (542)
Q Consensus       302 ~~~~~~~~~~a~~~L~~l~~  321 (542)
                      ..........+...+..+..
T Consensus       651 ~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         651 SEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HTTCTTTHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHHHHHHHHHH
Confidence            77777777777777766654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.56  E-value=3.4  Score=36.87  Aligned_cols=150  Identities=11%  Similarity=0.155  Sum_probs=98.3

Q ss_pred             hHHHHhCCchHHHHhhhc--------C---CChHHHHHHHHHHHHhHccCCh-HHHHHHHhcCcHHHHHHhhccCCHHHH
Q psy12594         34 IHFLKDLNVVDLIVPLLA--------D---KVPSIQHAALATLGKLMCAKHV-DIRQEVLERNLVALVLKDLTKQNKHYK  101 (542)
Q Consensus        34 ~~~l~~~g~i~~L~~lL~--------s---~~~~v~~~a~~~L~~l~~~~~~-~~~~~i~~~~~l~~Lv~~L~~~~~~~~  101 (542)
                      .+.| .++|+..|..+|.        +   .+...+..++.+|..+.  +.. .....+...+.+..++..|.++++.++
T Consensus        39 v~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm--n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr  115 (343)
T d2bnxa1          39 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM--NNKFGIKTMLETEEGILLLVRAMDPAVPNMM  115 (343)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT--SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHH
T ss_pred             HHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh--ccHHHHHHHHcChHHHHHHHHccCCCchHHH
Confidence            3445 4567777777763        1   13467888999999999  884 445555667899999999999999999


Q ss_pred             HHHHHHHHHHhcCC---hhhhhH----------hhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCCh------HHHH
Q psy12594        102 KTALHMLTCVAQQD---ERCAGL----------IEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNK------HFAE  161 (542)
Q Consensus       102 ~~a~~~L~~l~~~~---~~~~~~----------~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~------~~~~  161 (542)
                      ..++.+|..+|...   .....+          -+.+-...+++.++.. +.+.+..++..+-.+....+      ..+.
T Consensus       116 ~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~  195 (343)
T d2bnxa1         116 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS  195 (343)
T ss_dssp             HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence            99999999998432   122221          2345678888888765 46777666665655654433      2345


Q ss_pred             HHHHcCChHHHHHhccC-CCHhHHHHH
Q psy12594        162 RIVQCGALPPLVQILAS-PQLSLKHAA  187 (542)
Q Consensus       162 ~i~~~g~i~~L~~ll~~-~~~~~~~~a  187 (542)
                      .+...|+.+. +.-++. .++.+..+.
T Consensus       196 E~~~~Gl~~i-l~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         196 ELMRLGLHQV-LQELREIENEDMKVQL  221 (343)
T ss_dssp             HHHHTTHHHH-HHHHTTCCCHHHHHHH
T ss_pred             HHHHCChHHH-HHHHHccCChHHHHHH
Confidence            5667775554 444544 345544433

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=2.3  Score=32.51  Aligned_cols=74  Identities=15%  Similarity=0.088  Sum_probs=60.1

Q ss_pred             CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhcC
Q psy12594         41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQQ  114 (542)
Q Consensus        41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~~  114 (542)
                      .++..|.+-|.+.++.++..|+..|-.+.....+.....+...+++..|++++..      .+..++...+..+...+..
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3466677778899999999999999999933338888899888999999998852      5678999999888887643

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.32  E-value=2.6  Score=32.16  Aligned_cols=72  Identities=15%  Similarity=0.072  Sum_probs=59.6

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~  113 (542)
                      ++..|.+-+++.+|.++..|+..|..+.....+.....+....++..|++++..      .++.++..++.++...+.
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            556677778899999999999999999954448888888888899999998863      468899999999888764

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.18  E-value=1.6  Score=33.53  Aligned_cols=72  Identities=13%  Similarity=0.152  Sum_probs=58.5

Q ss_pred             chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhc
Q psy12594         42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQ  113 (542)
Q Consensus        42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~  113 (542)
                      ++..|.+-+++.+|.++..|+..|..+.....+.....+...+.+..+++++.+ .+..++..++.++...+.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            566778888999999999999999999933336677777777888888888865 467899999988888764