Psyllid ID: psy12607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MFNINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK
Secondary Structure (PSIPRED)
cccccHHHHccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccHHHHHHHHHHccccccHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccHEEEcccHHHHHHHHEccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mfninlklhlqgtdygsflanepsplavsVIDDKLREKLVIEFIHMRnhaveplstfLDFITYSYMIDNIILLITGTlhqrpiselipkchplgsfeQMEAIHVAATPAELYNAVlvdtplapffvdciseqdlDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK
Flexible Loop (DISEMBL)
MFNINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIhmrnhaveplSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK
Low Complexity Region (SEG)
MFNINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK
Disordered region (IsUnstruct)
***INLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEI***
Disordered Region (DISOPRED)
*FNINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK
Disordered Region (DISEMBL)
MFNINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK
Disordered Region (DISPRO)
MFNINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q25531	348	V-type proton ATPase subu	N/A	N/A	0.971	0.488	0.935	1e-91
Q9W4P5	350	V-type proton ATPase subu	yes	N/A	0.971	0.485	0.929	8e-91
P51863	351	V-type proton ATPase subu	yes	N/A	0.965	0.481	0.828	4e-81
Q5R6I1	351	V-type proton ATPase subu	yes	N/A	0.965	0.481	0.822	7e-81
P61421	351	V-type proton ATPase subu	yes	N/A	0.965	0.481	0.822	7e-81
P61420	351	V-type proton ATPase subu	yes	N/A	0.965	0.481	0.822	7e-81
Q6P335	350	V-type proton ATPase subu	no	N/A	0.965	0.482	0.769	8e-76
Q5ZHL0	351	V-type proton ATPase subu	no	N/A	0.965	0.481	0.745	7e-73
Q80SY3	350	V-type proton ATPase subu	no	N/A	0.965	0.482	0.627	5e-61
Q2KJB6	351	V-type proton ATPase subu	no	N/A	0.965	0.481	0.609	9e-61

>sp|Q25531|VA0D_MANSE V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1

 Score =  335 bits (858), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/170 (93%), Positives = 167/170 (98%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYG+FLANEPSPL+VS IDDKLREKLVIEF H+RNH+VEPLSTFLDFITYS
Sbjct: 41  DLKLHLQGTDYGTFLANEPSPLSVSTIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCK++GGTTAD MCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADVMCEILA 210

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
Manduca sexta (taxid: 7130)

>sp|Q9W4P5|VA0D1_DROME V-type proton ATPase subunit d 1 OS=Drosophila melanogaster GN=VhaAC39-1 PE=2 SV=1

 Score =  332 bits (851), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 158/170 (92%), Positives = 164/170 (96%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYGSFLANEPSPL+VSVIDDKLREKLVIEF HMRNHAVEPLS FLDFITY 
Sbjct: 43  DLKLHLQGTDYGSFLANEPSPLSVSVIDDKLREKLVIEFQHMRNHAVEPLSNFLDFITYG 102

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVA+TPAELYNAVLVDTPLAPF
Sbjct: 103 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELYNAVLVDTPLAPF 162

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFY+FCK +GG TAD MCEIL+
Sbjct: 163 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMGGATADVMCEILA 212

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.

Drosophila melanogaster (taxid: 7227)

>sp|P51863|VA0D1_MOUSE V-type proton ATPase subunit d 1 OS=Mus musculus GN=Atp6v0d1 PE=1 SV=2

 Score =  300 bits (767), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 155/169 (91%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQ TDYG+FLANE SPL VSVIDDKL+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct: 44  DLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct: 104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct: 164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Mus musculus (taxid: 10090)

>sp|Q5R6I1|VA0D1_PONAB V-type proton ATPase subunit d 1 OS=Pongo abelii GN=ATP6V0D1 PE=2 SV=1

 Score =  299 bits (765), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 139/169 (82%), Positives = 155/169 (91%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQ TDYG+FLANE SPL VSVIDD+L+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct: 44  DLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct: 104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct: 164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Pongo abelii (taxid: 9601)

>sp|P61421|VA0D1_HUMAN V-type proton ATPase subunit d 1 OS=Homo sapiens GN=ATP6V0D1 PE=1 SV=1

 Score =  299 bits (765), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 139/169 (82%), Positives = 155/169 (91%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQ TDYG+FLANE SPL VSVIDD+L+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct: 44  DLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct: 104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct: 164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Homo sapiens (taxid: 9606)

>sp|P61420|VA0D1_BOVIN V-type proton ATPase subunit d 1 OS=Bos taurus GN=ATP6V0D1 PE=1 SV=1

 Score =  299 bits (765), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 139/169 (82%), Positives = 155/169 (91%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQ TDYG+FLANE SPL VSVIDD+L+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct: 44  DLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct: 104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct: 164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Bos taurus (taxid: 9913)

>sp|Q6P335|VA0D2_XENTR V-type proton ATPase subunit d 2 OS=Xenopus tropicalis GN=atp6v0d2 PE=2 SV=1

 Score =  282 bits (721), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 130/169 (76%), Positives = 150/169 (88%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQ TDYGSFLANE   L VS+ID +L++KL+ EF + RNHA EPL+TFLDFITYS
Sbjct: 43  DLKLHLQSTDYGSFLANETRQLTVSIIDQRLKDKLMAEFHYFRNHAFEPLATFLDFITYS 102

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISEL+PKCHPLGSFEQMEA+++A TPAEL+NA++VDTPLA F
Sbjct: 103 YMIDNIILLITGTLHQRPISELVPKCHPLGSFEQMEAVNIAQTPAELFNAIIVDTPLADF 162

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           F DC+SE D+DEMNIEI+RN LYK+YLEAFY FCKKLGGTT + MC IL
Sbjct: 163 FQDCLSENDMDEMNIEIMRNKLYKSYLEAFYKFCKKLGGTTEEIMCPIL 211

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZHL0|VA0D2_CHICK V-type proton ATPase subunit d 2 OS=Gallus gallus GN=ATP6V0D2 PE=2 SV=1

 Score =  272 bits (696), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 147/169 (86%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQ TDYG+FLANE  PL +S IDDKL+ KL+ EF + RNHA EPL+TFL+FITYS
Sbjct: 44  DLKLHLQTTDYGNFLANESGPLTISTIDDKLKTKLLTEFHYFRNHAFEPLTTFLNFITYS 103

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPI+EL+PKCHPLGSFEQMEA+ +A+ P EL+NA+LVDTPLA F
Sbjct: 104 YMIDNIILLITGTLHQRPIAELVPKCHPLGSFEQMEAVSIASNPTELFNAILVDTPLAAF 163

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           F DC+SE DLDEMN+EI+RN LYK+YLEAFY FC+K GGTTA+ M  IL
Sbjct: 164 FQDCLSENDLDEMNVEIMRNKLYKSYLEAFYKFCEKQGGTTAEIMKPIL 212

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Gallus gallus (taxid: 9031)

>sp|Q80SY3|VA0D2_MOUSE V-type proton ATPase subunit d 2 OS=Mus musculus GN=Atp6v0d2 PE=2 SV=2

 Score =  233 bits (594), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 137/169 (81%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LK+HLQ TDYG+FLANE +PL VS ID ++R+KL  EF + RNH++EPLSTFL ++T S
Sbjct: 44  DLKIHLQTTDYGNFLANETNPLTVSKIDTEMRKKLCREFDYFRNHSLEPLSTFLTYMTCS 103

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILL+ G L ++ + E++ KCHPLG F +MEA+++A TP++L+ AVLV+TPLAPF
Sbjct: 104 YMIDNIILLMNGALQKKSVKEVLAKCHPLGRFTEMEAVNIAETPSDLFKAVLVETPLAPF 163

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           F DC+SE  LDE+NIE++RN LYK+YLEAFY FCK  G  TAD MC IL
Sbjct: 164 FQDCMSENTLDELNIELLRNKLYKSYLEAFYKFCKDHGDVTADVMCPIL 212

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system (By similarity). May play a role in coupling of proton transport and ATP hydrolysis. Regulator of osteoclast fusion and bone formation.

Mus musculus (taxid: 10090)

>sp|Q2KJB6|VA0D2_BOVIN V-type proton ATPase subunit d 2 OS=Bos taurus GN=ATP6V0D2 PE=2 SV=1

 Score =  232 bits (592), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 103/169 (60%), Positives = 137/169 (81%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LK+HLQ TDYG+FLAN+ +PL VSVID ++R+KL  EF + RNH++EPLSTF  ++T S
Sbjct: 44  DLKIHLQTTDYGNFLANQATPLTVSVIDTEMRKKLCREFEYFRNHSLEPLSTFFTYMTCS 103

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDN+ILL+ G L  +P+ +++ KCHPLG F +MEA+++A TP++L+NA+LV+TPLAPF
Sbjct: 104 YMIDNVILLMNGALQNKPVKDVLVKCHPLGHFTEMEAVNIAETPSDLFNAILVETPLAPF 163

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           F DC SE  LDE+NIEI+RN LYK+Y+EAFY FCK  G  TA+ MC IL
Sbjct: 164 FQDCTSENALDELNIEILRNKLYKSYIEAFYKFCKNHGDVTAEVMCPIL 212

Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. May play a role in coupling of proton transport and ATP hydrolysis.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
326319966	351	V-type proton ATPase subunit d [Acyrthos	0.971	0.484	0.958	8e-91
158289559	348	AGAP000721-PA [Anopheles gambiae str. PE	0.971	0.488	0.952	8e-91
157128068	348	vacuolar ATP synthase subunit ac39 [Aede	0.971	0.488	0.952	1e-90
170048704	348	vacuolar ATP synthase subunit ac39 [Cule	0.971	0.488	0.952	1e-90
312378772	348	hypothetical protein AND_09577 [Anophele	0.971	0.488	0.952	1e-90
12585456	348	RecName: Full=V-type proton ATPase subun	0.971	0.488	0.935	5e-90
357605210	348	V-type proton ATPase subunit d [Danaus p	0.971	0.488	0.929	7e-90
307186159	322	Vacuolar proton pump subunit d [Camponot	0.971	0.527	0.941	8e-90
401757801	348	V-ATPase subunit D [Locusta migratoria]	0.971	0.488	0.947	8e-90
332023933	302	V-type proton ATPase subunit d [Acromyrm	0.971	0.562	0.941	9e-90

>gi|326319966|ref|NP_001191854.1| V-type proton ATPase subunit d [Acyrthosiphon pisum] gi|54287946|gb|AAV31420.1| vacuolar ATP synthase subunit d 1 [Toxoptera citricida]

 Score =  337 bits (865), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 163/170 (95%), Positives = 166/170 (97%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQ TDYG FLANEPSPLAVSVIDDKLREKLVIEF HMRNHAVEPLSTFLD+ITYS
Sbjct: 43  DLKLHLQSTDYGQFLANEPSPLAVSVIDDKLREKLVIEFQHMRNHAVEPLSTFLDYITYS 102

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 103 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 162

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLE+FYDFCKKLGG TADTMCEILS
Sbjct: 163 FVDCISEQDLDEMNIEIIRNTLYKAYLESFYDFCKKLGGITADTMCEILS 212

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158289559|ref|XP_311260.4| AGAP000721-PA [Anopheles gambiae str. PEST] gi|157018575|gb|EAA06911.5| AGAP000721-PA [Anopheles gambiae str. PEST]

 Score =  337 bits (865), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 162/170 (95%), Positives = 166/170 (97%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYG FLANEPSPLAVSVIDDKLREKLVIEF HMRNHAVEPLSTFLD+ITYS
Sbjct: 41  DLKLHLQGTDYGQFLANEPSPLAVSVIDDKLREKLVIEFQHMRNHAVEPLSTFLDYITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCK +GGTTAD MCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKNIGGTTADVMCEILA 210

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128068|ref|XP_001661299.1| vacuolar ATP synthase subunit ac39 [Aedes aegypti] gi|94469114|gb|ABF18406.1| vacuolar H+-ATPase V0 sector subunit d [Aedes aegypti] gi|108872708|gb|EAT36933.1| AAEL011025-PA [Aedes aegypti]

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/170 (95%), Positives = 166/170 (97%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYG FLANEPSPLAVSVIDDKLREKLVIEF HMRNHAVEPLSTFLDFITYS
Sbjct: 41  DLKLHLQGTDYGQFLANEPSPLAVSVIDDKLREKLVIEFQHMRNHAVEPLSTFLDFITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFY+FCK +GGTTAD MCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYEFCKNIGGTTADVMCEILA 210

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048704|ref|XP_001870744.1| vacuolar ATP synthase subunit ac39 [Culex quinquefasciatus] gi|167870722|gb|EDS34105.1| vacuolar ATP synthase subunit ac39 [Culex quinquefasciatus]

 Score =  337 bits (864), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/170 (95%), Positives = 166/170 (97%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYG FLANEPSPLAVSVIDDKLREKLVIEF HMRNHAVEPLSTFLDFITYS
Sbjct: 41  DLKLHLQGTDYGQFLANEPSPLAVSVIDDKLREKLVIEFQHMRNHAVEPLSTFLDFITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFY+FCK +GGTTAD MCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYEFCKGIGGTTADAMCEILA 210

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378772|gb|EFR25251.1| hypothetical protein AND_09577 [Anopheles darlingi]

 Score =  337 bits (863), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 162/170 (95%), Positives = 166/170 (97%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYG FLANEPSPLAVSVIDDKLREKLVIEF HMRNHAVEPLSTFLD+ITYS
Sbjct: 41  DLKLHLQGTDYGQFLANEPSPLAVSVIDDKLREKLVIEFQHMRNHAVEPLSTFLDYITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEII NTLYKAYLEAFYDFCKK+GGTTAD MCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIHNTLYKAYLEAFYDFCKKIGGTTADVMCEILA 210

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12585456|sp|Q25531.1|VA0D_MANSE RecName: Full=V-type proton ATPase subunit d; Short=V-ATPase subunit d; AltName: Full=M40; AltName: Full=V-ATPase 40 kDa subunit; AltName: Full=Vacuolar proton pump subunit d gi|1419687|emb|CAA67343.1| 40-kDa V-ATPase subunit [Manduca sexta]

 Score =  335 bits (858), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 159/170 (93%), Positives = 167/170 (98%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYG+FLANEPSPL+VS IDDKLREKLVIEF H+RNH+VEPLSTFLDFITYS
Sbjct: 41  DLKLHLQGTDYGTFLANEPSPLSVSTIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCK++GGTTAD MCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKQIGGTTADVMCEILA 210

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605210|gb|EHJ64513.1| V-type proton ATPase subunit d [Danaus plexippus]

 Score =  334 bits (857), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 158/170 (92%), Positives = 167/170 (98%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYG+FLANEPSPLAVS IDDKLREKLVIEF H+RNH+VEP+STFLDFITYS
Sbjct: 41  DLKLHLQGTDYGTFLANEPSPLAVSTIDDKLREKLVIEFQHIRNHSVEPMSTFLDFITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFY+FCK++GGTTAD MCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYEFCKQIGGTTADVMCEILA 210

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186159|gb|EFN71876.1| Vacuolar proton pump subunit d [Camponotus floridanus]

 Score =  334 bits (857), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 160/170 (94%), Positives = 166/170 (97%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHL GTDYGSFLANEPSPL+VSVIDDKLREKLV+EF HMRNH+VEPLS FLDFITYS
Sbjct: 41  DLKLHLAGTDYGSFLANEPSPLSVSVIDDKLREKLVVEFQHMRNHSVEPLSQFLDFITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFY FCK+LGGTTADTMCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYKFCKELGGTTADTMCEILA 210

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|401757801|gb|AFQ00928.1| V-ATPase subunit D [Locusta migratoria]

 Score =  334 bits (856), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 161/170 (94%), Positives = 167/170 (98%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHLQGTDYGSFLANEPSPL VSVIDDKLREKLVIEF HMR+HAVEPLSTFLD+ITYS
Sbjct: 41  DLKLHLQGTDYGSFLANEPSPLQVSVIDDKLREKLVIEFQHMRHHAVEPLSTFLDYITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELY+AVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYSAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFY FCK+LGGTTADTMCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYSFCKELGGTTADTMCEILA 210

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023933|gb|EGI64151.1| V-type proton ATPase subunit d [Acromyrmex echinatior]

 Score =  334 bits (856), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 160/170 (94%), Positives = 166/170 (97%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +LKLHL GTDYGSFLANEPSPL+VSVIDDKLREKLV+EF HMRNH+VEPLS FLDFITYS
Sbjct: 41  DLKLHLAGTDYGSFLANEPSPLSVSVIDDKLREKLVVEFQHMRNHSVEPLSQFLDFITYS 100

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
           YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF
Sbjct: 101 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 160

Query: 125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
           FVDCISEQDLDEMNIEIIRNTLYKAYLEAFY FCK+LGGTTADTMCEIL+
Sbjct: 161 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYKFCKELGGTTADTMCEILA 210

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
FB|FBgn0028665	350	VhaAC39-1 "Vacuolar H[+] ATPas	0.971	0.485	0.929	8.2e-83
UNIPROTKB|E1BVF8	351	LOC100857345 "Uncharacterized	0.965	0.481	0.840	1.7e-75
ZFIN|ZDB-GENE-030131-1531	350	atp6v0d1 "ATPase, H+ transport	0.965	0.482	0.834	1.2e-74
MGI|MGI:1201778	351	Atp6v0d1 "ATPase, H+ transport	0.965	0.481	0.828	1.9e-74
RGD|1306159	351	Atp6v0d1 "ATPase, H+ transport	0.965	0.481	0.828	1.9e-74
UNIPROTKB|P61420	351	ATP6V0D1 "V-type proton ATPase	0.965	0.481	0.822	4e-74
UNIPROTKB|E2RJQ8	351	ATP6V0D1 "Uncharacterized prot	0.965	0.481	0.822	4e-74
UNIPROTKB|P61421	351	ATP6V0D1 "V-type proton ATPase	0.965	0.481	0.822	4e-74
UNIPROTKB|F2Z5H6	351	ATP6V0D1 "Uncharacterized prot	0.965	0.481	0.822	4e-74
UNIPROTKB|F5GYQ1	392	ATP6V0D1 "V-type proton ATPase	0.64	0.285	0.839	2.9e-72

FB|FBgn0028665 VhaAC39-1 "Vacuolar H[+] ATPase AC39 subunit 1" [Drosophila melanogaster (taxid:7227)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 158/170 (92%), Positives = 164/170 (96%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQGTDYGSFLANEPSPL+VSVIDDKLREKLVIEF HMRNHAVEPLS FLDFITY 
Sbjct:    43 DLKLHLQGTDYGSFLANEPSPLSVSVIDDKLREKLVIEFQHMRNHAVEPLSNFLDFITYG 102

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVA+TPAELYNAVLVDTPLAPF
Sbjct:   103 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVASTPAELYNAVLVDTPLAPF 162

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILS 174
             FVDCISEQDLDEMNIEIIRNTLYKAYLEAFY+FCK +GG TAD MCEIL+
Sbjct:   163 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYNFCKNMGGATADVMCEILA 212

GO:0000220 "vacuolar proton-transporting V-type ATPase, V0 domain" evidence=ISS;NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISS

GO:0015992 "proton transport" evidence=NAS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0007035 "vacuolar acidification" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E1BVF8 LOC100857345 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 142/169 (84%), Positives = 156/169 (92%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQ TDYG+FLANE SPL VSVIDDKL+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct:    44 DLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDN+ILLITGTLHQR ISEL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct:   104 YMIDNVILLITGTLHQRSISELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FCK LGGTTAD MC IL
Sbjct:   164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCKALGGTTADAMCPIL 212

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

ZFIN|ZDB-GENE-030131-1531 atp6v0d1 "ATPase, H+ transporting, V0 subunit D isoform 1" [Danio rerio (taxid:7955)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 141/169 (83%), Positives = 155/169 (91%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQ TDYGSFLANE SPL VSVIDDKL+EK+V+EF HMRN + EPL++F+DFITYS
Sbjct:    43 DLKLHLQSTDYGSFLANEASPLTVSVIDDKLKEKMVVEFRHMRNQSYEPLASFMDFITYS 102

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDN+ILLITGTLHQR ISEL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct:   103 YMIDNVILLITGTLHQRAISELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 162

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             F DCISEQDLDEMNIEIIRNTLYKAYLEAFY FC  LGGTTADTMC IL
Sbjct:   163 FQDCISEQDLDEMNIEIIRNTLYKAYLEAFYKFCTTLGGTTADTMCPIL 211

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0046688 "response to copper ion" evidence=IMP

GO:0032438 "melanosome organization" evidence=IMP

GO:0008057 "eye pigment granule organization" evidence=IMP

GO:0003406 "retinal pigment epithelium development" evidence=IMP

MGI|MGI:1201778 Atp6v0d1 "ATPase, H+ transporting, lysosomal V0 subunit D1" [Mus musculus (taxid:10090)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 140/169 (82%), Positives = 155/169 (91%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQ TDYG+FLANE SPL VSVIDDKL+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct:    44 DLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct:   104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct:   164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

GO:0005769 "early endosome" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IDA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IDA

GO:0043005 "neuron projection" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043679 "axon terminus" evidence=ISO

RGD|1306159 Atp6v0d1 "ATPase, H+ transporting, lysosomal V0 subunit D1" [Rattus norvegicus (taxid:10116)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 140/169 (82%), Positives = 155/169 (91%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQ TDYG+FLANE SPL VSVIDDKL+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct:    44 DLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct:   104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct:   164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

GO:0005769 "early endosome" evidence=IEA;ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0007420 "brain development" evidence=IEP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA;ISO

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=ISO

GO:0032403 "protein complex binding" evidence=IPI

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0043679 "axon terminus" evidence=IDA

UNIPROTKB|P61420 ATP6V0D1 "V-type proton ATPase subunit d 1" [Bos taurus (taxid:9913)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 139/169 (82%), Positives = 155/169 (91%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQ TDYG+FLANE SPL VSVIDD+L+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct:    44 DLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct:   104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct:   164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|E2RJQ8 ATP6V0D1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 139/169 (82%), Positives = 155/169 (91%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQ TDYG+FLANE SPL VSVIDD+L+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct:    44 DLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct:   104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct:   164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|P61421 ATP6V0D1 "V-type proton ATPase subunit d 1" [Homo sapiens (taxid:9606)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 139/169 (82%), Positives = 155/169 (91%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQ TDYG+FLANE SPL VSVIDD+L+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct:    44 DLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct:   104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct:   164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043679 "axon terminus" evidence=IEA

GO:0015992 "proton transport" evidence=NAS

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IDA;NAS

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0006987 "activation of signaling protein activity involved in unfolded protein response" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0030670 "phagocytic vesicle membrane" evidence=TAS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|F2Z5H6 ATP6V0D1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 139/169 (82%), Positives = 155/169 (91%)

Query:     5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
             +LKLHLQ TDYG+FLANE SPL VSVIDD+L+EK+V+EF HMRNHA EPL++FLDFITYS
Sbjct:    44 DLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYS 103

Query:    65 YMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPF 124
             YMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPLA F
Sbjct:   104 YMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAF 163

Query:   125 FVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             F DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct:   164 FQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 212

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|F5GYQ1 ATP6V0D1 "V-type proton ATPase subunit d 1" [Homo sapiens (taxid:9606)]

 Score = 507 (183.5 bits), Expect = 2.9e-72, Sum P(2) = 2.9e-72
 Identities = 94/112 (83%), Positives = 103/112 (91%)

Query:    62 TYSYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPL 121
             +YSYMIDN+ILLITGTLHQR I+EL+PKCHPLGSFEQMEA+++A TPAELYNA+LVDTPL
Sbjct:   142 SYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPL 201

Query:   122 APFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
             A FF DCISEQDLDEMNIEIIRNTLYKAYLE+FY FC  LGGTTAD MC IL
Sbjct:   202 AAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPIL 253

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033179 "proton-transporting V-type ATPase, V0 domain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHA4	VA0D2_ARATH	No assigned EC number	0.5647	0.9714	0.4843	yes	N/A
Q9W4P5	VA0D1_DROME	No assigned EC number	0.9294	0.9714	0.4857	yes	N/A
P51863	VA0D1_MOUSE	No assigned EC number	0.8284	0.9657	0.4814	yes	N/A
P32366	VA0D_YEAST	No assigned EC number	0.5032	0.8742	0.4434	yes	N/A
O13753	VA0D_SCHPO	No assigned EC number	0.5798	0.96	0.4897	yes	N/A
Q8RU33	VA0D_ORYSJ	No assigned EC number	0.5941	0.9714	0.4843	yes	N/A
Q9LJI5	VA0D1_ARATH	No assigned EC number	0.5705	0.9714	0.4843	yes	N/A
P54641	VA0D_DICDI	No assigned EC number	0.6352	0.9714	0.4775	yes	N/A
Q25531	VA0D_MANSE	No assigned EC number	0.9352	0.9714	0.4885	N/A	N/A
Q5R6I1	VA0D1_PONAB	No assigned EC number	0.8224	0.9657	0.4814	yes	N/A
P61421	VA0D1_HUMAN	No assigned EC number	0.8224	0.9657	0.4814	yes	N/A
P61420	VA0D1_BOVIN	No assigned EC number	0.8224	0.9657	0.4814	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
pfam01992	335	pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) s	6e-62
COG1527	346	COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase su	4e-24

>gnl|CDD|216834 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit

 Score =  194 bits (494), Expect = 6e-62
 Identities = 67/170 (39%), Positives = 85/170 (50%), Gaps = 5/170 (2%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
            L+L L+  DYG  LA   S  +VS+I+  L   L   +  +R  A   L   +D +   
Sbjct: 30  ILRLLLE-DDYGDELAELGSKFSVSLIEKALNRNLAKTYELLRRIAPGSLRKLIDLLLKR 88

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLG-SFEQMEAIHVAATPAELYNAVLVDTPLAP 123
           + I NI  LI G L  RP  E++    PLG  FE+M+ +  A T  E+ N VL  TP AP
Sbjct: 89  WDIWNIKTLIRGKLAGRPAEEVLELLIPLGEVFEKMKELADAKTIEEVVN-VLEGTPYAP 147

Query: 124 FFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
                +SE   DE NIEII NTLYK Y E    F K  GG  A  + E L
Sbjct: 148 PLQKALSE--YDETNIEIIENTLYKRYYEELLKFAKSRGGKEAKILREFL 195

This family includes the AC39 subunit from vacuolar ATP synthase, and the C subunit from archaebacterial ATP synthase. The family also includes subunit C from the Sodium transporting ATP synthase from Enterococcus hirae. Length = 335

>gnl|CDD|224444 COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]

 Score = 95.9 bits (239), Expect = 4e-24
 Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 10/171 (5%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
                L+ TDY   L +  S L   +++  L  KLV  +  +   +   +   +D   Y 
Sbjct: 40  EFARVLEETDYKEDLDSLTS-LGPDLLEKALNRKLVDTYRLILRISPGSIKKLIDAYLYK 98

Query: 65  YMIDNIILLITGTLH--QRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLA 122
           + I+NI  L+   L      IS+L     PLG FE +  +  A T  E+   +   T LA
Sbjct: 99  WDIENIKTLLRAKLAGDPEEISDL---LIPLGDFETLLTLAEAKTMEEVVETLEGTTYLA 155

Query: 123 PFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           P           D  +IE + N L KAY E          G   + + E L
Sbjct: 156 PLEEALRDY--EDTGDIEPLENALDKAYYEDLLRSVNSEKG--DELLREFL 202

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG2957|consensus	350		100.0
COG1527	346	NtpC Archaeal/vacuolar-type H+-ATPase subunit C [E	99.97
PF01992	337	vATP-synt_AC39: ATP synthase (C/AC39) subunit; Int	99.91
TIGR02923	343	AhaC ATP synthase A1, C subunit. The A1/A0 ATP syn	99.89
PRK01198	352	V-type ATP synthase subunit C; Provisional	99.88
PRK01198	352	V-type ATP synthase subunit C; Provisional	99.53
TIGR02923	343	AhaC ATP synthase A1, C subunit. The A1/A0 ATP syn	99.15
PF01992	337	vATP-synt_AC39: ATP synthase (C/AC39) subunit; Int	98.68
COG1527	346	NtpC Archaeal/vacuolar-type H+-ATPase subunit C [E	98.4
PF10962	271	DUF2764: Protein of unknown function (DUF2764); In	84.67

>KOG2957|consensus

Probab=100.00  E-value=9.8e-70  Score=468.31  Aligned_cols=172  Identities=77%  Similarity=1.256  Sum_probs=170.2

Q ss_pred             chhhhhhcCCCCchhhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCC
Q psy12607          3 NINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRP   82 (175)
Q Consensus         3 ~~dlk~~L~~TDYg~~L~~e~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~   82 (175)
                      -+|+|++||+||||+||++++||+|++.|+++|++||+++|+++|+||.+|+++||||++|+||||||++||+|++|+|+
T Consensus        42 LEDlki~Ls~Tdyg~fl~n~~s~lt~s~I~~~l~ekL~~ef~h~R~~a~epl~tfldyity~ymIdNv~lLitgtl~~r~  121 (350)
T KOG2957|consen   42 LEDLKIHLSSTDYGNFLANEPSPLTVSVIDEKLREKLVDEFDHIRDQADEPLSTFLDYITYGYMIDNVILLITGTLHDRD  121 (350)
T ss_pred             HHHHHHhhcccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhHHHHHHhccccCCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCCCchhhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12607         83 ISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLG  162 (175)
Q Consensus        83 ~~ell~~chPLG~F~~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f~~~lg  162 (175)
                      +.|+++||||||||++|+||++|+|++|+|++||+|||+||||++|++++||+++|||++||+|||+|||+||+||+.+|
T Consensus       122 ~~ell~kChpLG~F~~l~ai~vA~n~~ely~~vlvdTpla~~F~dc~~~~dld~mniEIiRn~lYKaylE~fY~fc~~~g  201 (350)
T KOG2957|consen  122 VGELLEKCHPLGSFDQLEAIKVASNPAELYNAVLVDTPLAPYFEDCLSEEDLDEMNIEIIRNTLYKAYLEDFYNFCKKLG  201 (350)
T ss_pred             HHHHHHhcCCcCchhhhhhhhhcCCHHHHHHHHHhcCcchHHHHhhcCHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHhhc
Q psy12607        163 GTTADTMCEILS  174 (175)
Q Consensus       163 g~t~~vM~~iL~  174 (175)
                      |+|||+||+||+
T Consensus       202 ~~tae~M~~iL~  213 (350)
T KOG2957|consen  202 GATAEVMCEILA  213 (350)
T ss_pred             CchHHHHHHHHh
Confidence            999999999995

>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]

Probab=99.97  E-value=2.7e-31  Score=234.87  Aligned_cols=164  Identities=26%  Similarity=0.297  Sum_probs=148.0

Q ss_pred             hhhhhhcCCCCchhhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCCc
Q psy12607          4 INLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPI   83 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~~e~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~~   83 (175)
                      +||+.+|++|||++++.+.++ .+++.++++|.++|+++|+.++.++|+.++.++++++++|||+||+.||+||.+| ++
T Consensus        39 ee~~~~L~~T~Y~~~~d~l~~-~~~~~le~aL~~~L~~~~~~i~~~sp~~~k~~i~~~l~k~di~NIk~li~ak~~g-~~  116 (346)
T COG1527          39 EEFARVLEETDYKEDLDSLTS-LGPDLLEKALNRKLVDTYRLILRISPGSIKKLIDAYLYKWDIENIKTLLRAKLAG-DP  116 (346)
T ss_pred             HHHHHHHhcCCchhHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence            689999999999999999876 7899999999999999999999999999999999999999999999999999999 99


Q ss_pred             hhhhhhccCCCCchhhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy12607         84 SELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGG  163 (175)
Q Consensus        84 ~ell~~chPLG~F~~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f~~~lgg  163 (175)
                      +++..+|||+|+|+.+.+++.|+|++|++..+.+.|+++++...|.  ...+..|+++|++.|||+|+|+|+++|++..|
T Consensus       117 ~~~~~~liP~G~~~~~~~l~~a~t~eev~~~~~~~~y~~~~~~~~~--~y~~~~~i~~le~~Ldk~Yye~l~~~~~~~~~  194 (346)
T COG1527         117 EEISDLLIPLGDFETLLTLAEAKTMEEVVETLEGTTYLAPLEEALR--DYEDTGDIEPLENALDKAYYEDLLRSVNSEKG  194 (346)
T ss_pred             cchHHhcCcCchHHHHHHHHhhcchHHHHHHHhcCchhHHHHHHHH--HHhhcCCHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999999999988666665665554443  22566999999999999999999999999887


Q ss_pred             chHHHHHHhh
Q psy12607        164 TTADTMCEIL  173 (175)
Q Consensus       164 ~t~~vM~~iL  173 (175)
                      ..  +|.+++
T Consensus       195 ~~--~~~~~~  202 (346)
T COG1527         195 DE--LLREFL  202 (346)
T ss_pred             hH--HHHHHH
Confidence            75  666554

>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.91  E-value=1.1e-24  Score=187.14  Aligned_cols=168  Identities=27%  Similarity=0.410  Sum_probs=131.9

Q ss_pred             hhhhhhcCCCCchhhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCCc
Q psy12607          4 INLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPI   83 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~~e~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~~   83 (175)
                      +|+...|++|+||+++.+.+...+...|+.+|+.+++++|+.++..+|++.+.|++++..+|+|+|++.+|+|+.+|++.
T Consensus        29 ~~~~~~l~~t~Y~~~l~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~r~ei~nik~ilr~~~~g~~~  108 (337)
T PF01992_consen   29 EEAVSLLEDTGYGDYLEEVSSEIHRRDIEQALRRELFKEFQKLLRFAPGEAKEFLDAYLMRYEIHNIKTILRAKLSGRDL  108 (337)
T ss_dssp             HHHHHHHTS-GGGGG--SSSHH----HHHHHHHHHHHHHTTTGGGG--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred             HHHHHHHhcccHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence            67889999999999998865435778999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCC-CchhhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12607         84 SELIPKCHPLG-SFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLG  162 (175)
Q Consensus        84 ~ell~~chPLG-~F~~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f~~~lg  162 (175)
                      +++...++|+| .++.+..+..++|++|+. .+|.||||+++++++.++  +++.++..++..|++.|++++++.+..++
T Consensus       109 ~~~~~~l~~~g~~~~~l~~l~~~~~~~e~~-~~L~~t~y~~~l~~~~~~--~~~~~~~~~~~~l~~~yy~~~~~~~~~~~  185 (337)
T PF01992_consen  109 EEILELLIPLGFSFEDLKELLSAKDVEELI-EALKGTPYYEVLRQALED--YEQQDFFYIEEALDDRYYEDLLKAAKKLS  185 (337)
T ss_dssp             GGS---S-SS-HHHHHHHHSSSHHHHHHHH--HTTT-THHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHhccccCCChhhHHHHhccCCHHHHH-HHhcCcchHHHHHHHHHh--hcccchHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999 445899999999999999 559999999999999874  88899999999999999999999999999


Q ss_pred             CchHHHHHHhhc
Q psy12607        163 GTTADTMCEILS  174 (175)
Q Consensus       163 g~t~~vM~~iL~  174 (175)
                      |.+++++.++++
T Consensus       186 ~~~~~~l~~~~~  197 (337)
T PF01992_consen  186 GSEREILRELLG  197 (337)
T ss_dssp             TSS-HHHHHHHH
T ss_pred             cchHHHHHHHHH
Confidence            999999998864

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.

>TIGR02923 AhaC ATP synthase A1, C subunit

Probab=99.89  E-value=1.4e-22  Score=175.03  Aligned_cols=166  Identities=18%  Similarity=0.237  Sum_probs=150.7

Q ss_pred             hhhhhhcCCCCchhhhhCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCC
Q psy12607          4 INLKLHLQGTDYGSFLANEPS-PLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRP   82 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~~e~~-~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~   82 (175)
                      +|+...|++|+|++++++... ..++..|+.+|+..+.++|+.++.+++++.+.|++++..+|||+||+.+++|+..|++
T Consensus        35 ~e~~~~L~~t~Y~~~l~~~~~~~~~~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~di~Nik~ilR~~~~g~~  114 (343)
T TIGR02923        35 DEIVRFLEETDYKKELDELGSKSYGVDLIEHALDANLAKTYEKLFRISPGASRDLIRLYLKKWDVWNIKTLIRAKYANAS  114 (343)
T ss_pred             HHHHHHhcCCChHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhHHHHHHHHHHHHcCCC
Confidence            688999999999999987421 3468899999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCCCch--hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHh
Q psy12607         83 ISELIPKCHPLGSFE--QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKK  160 (175)
Q Consensus        83 ~~ell~~chPLG~F~--~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f~~~  160 (175)
                      .+++.+.++|.|.|+  .++++..++|++|+++ +|.+|||++++++++ +   +..++..++..|+++|++++++.|+.
T Consensus       115 ~~~i~~~l~~~g~~~~~~l~~l~~~~~~~e~~~-~L~~t~y~~~l~~~~-~---~~~~l~~~E~~Ld~~y~~~l~~~~~~  189 (343)
T TIGR02923       115 AEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVE-ALEGTPYYGPLQEAL-A---GNGDLSPIENELDRMYYEKLLKYVGS  189 (343)
T ss_pred             HHHHHHHhccccccCHHHHHHHHcCCCHHHHHH-HcCCCccHHHHHHHH-h---cCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999998  4999999999999998 599999999999997 2   34889999999999999999999987


Q ss_pred             cCCchHHHHHHhhc
Q psy12607        161 LGGTTADTMCEILS  174 (175)
Q Consensus       161 lgg~t~~vM~~iL~  174 (175)
                      .+|.+..++..++.
T Consensus       190 ~~~~~~~~l~~~~~  203 (343)
T TIGR02923       190 PSDDETKLFTEFIK  203 (343)
T ss_pred             CCcccHHHHHHHHH
Confidence            77777778887764

The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.

>PRK01198 V-type ATP synthase subunit C; Provisional

Probab=99.88  E-value=1e-21  Score=169.99  Aligned_cols=166  Identities=17%  Similarity=0.249  Sum_probs=150.2

Q ss_pred             hhhhhhcCCCCchhhhhCCCCC-CCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCC
Q psy12607          4 INLKLHLQGTDYGSFLANEPSP-LAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRP   82 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~~e~~~-~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~   82 (175)
                      +|+...|++|+|++.+.+..+. .++..|+.+|+..+..+|+.++.++|++.+.|++++..+|||+||+.+++|+..|++
T Consensus        41 ~e~~~~L~~t~Y~~~l~~~~~~~~~~~~~E~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~di~NIk~ilr~~~~g~~  120 (352)
T PRK01198         41 EEIIRFLEETEYKEEIDELGSRYSGPDLIEKALNRNLAKTYELLLEISPGRLKELVDVYLRKWDIHNIKTLLRGKILGLD  120 (352)
T ss_pred             HHHHHHHhcCCcHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence            6889999999999999875443 357789999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCCCch--hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhcccccccc-ccHHHHHHHHHHHHHHHHHHHHH
Q psy12607         83 ISELIPKCHPLGSFE--QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDE-MNIEIIRNTLYKAYLEAFYDFCK  159 (175)
Q Consensus        83 ~~ell~~chPLG~F~--~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e-~nieiir~~L~K~yLE~fy~f~~  159 (175)
                      .+++.+.++|.|.|+  .+..+..++|++|+.+. |.+|||++++.++...  +.+ .++..++..|+++|++++++.+ 
T Consensus       121 ~~~i~~~l~~~g~l~~~~l~~l~~~~~~~e~~~~-L~~T~Y~~~l~~~~~~--~~~~~~~~~~E~~Ld~~~~~~l~~~~-  196 (352)
T PRK01198        121 AEEIEELLIPAGELDLEKLKELLEAKSVEEIVKI-LEGTEYYEVLEEALED--YEETGDLQPIENALDKYYYENLLEIA-  196 (352)
T ss_pred             hHHhhhheeeCCcCCHHHHHHHHhCCCHHHHHHH-hcCCchHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHHHh-
Confidence            999999999999998  89999999999999975 9999999999999865  544 8999999999999999999999 


Q ss_pred             hcCCchHHHHHHhh
Q psy12607        160 KLGGTTADTMCEIL  173 (175)
Q Consensus       160 ~lgg~t~~vM~~iL  173 (175)
                      +.++.+.+.+.+.+
T Consensus       197 ~~~~~~~~~l~~~~  210 (352)
T PRK01198        197 SPKDIDEKLLLEYV  210 (352)
T ss_pred             ccCCcchHHHHHHH
Confidence            56666777776655

>PRK01198 V-type ATP synthase subunit C; Provisional

Probab=99.53  E-value=2.9e-13  Score=117.21  Aligned_cols=165  Identities=17%  Similarity=0.202  Sum_probs=135.0

Q ss_pred             hhhhhhcCCCCchhhhhCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhc
Q psy12607          4 INLKLHLQGTDYGSFLANE----PSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLH   79 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~~e----~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~   79 (175)
                      +++.-.|++|.|++.|.+-    ....++..++.+++..+......+.+-.+.+-..+.+|+..+++|.||..+++|+..
T Consensus       149 ~e~~~~L~~T~Y~~~l~~~~~~~~~~~~~~~~E~~Ld~~~~~~l~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~ilr~k~~  228 (352)
T PRK01198        149 EEIVKILEGTEYYEVLEEALEDYEETGDLQPIENALDKYYYENLLEIASPKDIDEKLLLEYVRTEIDITNIKTLLRLKAQ  228 (352)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            5677889999999998751    122578999999999995555444444466778999999999999999999999999


Q ss_pred             CCCchhhhhhccCCCCch--hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhcccccccc-ccHHHHHHHHHHHHHHHHHH
Q psy12607         80 QRPISELIPKCHPLGSFE--QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDE-MNIEIIRNTLYKAYLEAFYD  156 (175)
Q Consensus        80 ~~~~~ell~~chPLG~F~--~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e-~nieiir~~L~K~yLE~fy~  156 (175)
                      |.+.+++.+.++|.|.++  .+.+++ +++++++.+. |.+|||++++.++..+  +.+ .++..++..++++|++...+
T Consensus       229 ~~~~e~i~~~li~~g~i~~~~l~~l~-~~~~~~~~~~-L~~t~y~~~l~~~~~~--~~~~~~~~~~E~~~d~~~~~~~~~  304 (352)
T PRK01198        229 GLSADFIEKVLIPGGSLDEEKLKELL-AEDIEELVSA-LEGTKYGDVLSEALEE--YEETGSLSVFEKALDNYLLEYMKK  304 (352)
T ss_pred             CCCHHHHHHHccCCCCcCHHHHHHHh-cCCHHHHHHH-HhcCccHHHHHHHHHH--HHccCCHHHHHHHHHHHHHHHHHH
Confidence            999999988899999777  899999 9999999977 9999999999998755  665 78999999999999999887


Q ss_pred             HHHhcCCchHHHHHHh
Q psy12607        157 FCKKLGGTTADTMCEI  172 (175)
Q Consensus       157 f~~~lgg~t~~vM~~i  172 (175)
                      .+.......+-+++.+
T Consensus       305 ~~~~~~~~~~~~l~yl  320 (352)
T PRK01198        305 LSKRYPFSVEPILGYI  320 (352)
T ss_pred             HhCcCCCChHHHHHHH
Confidence            7664333333355444

>TIGR02923 AhaC ATP synthase A1, C subunit

Probab=99.15  E-value=1.5e-09  Score=93.98  Aligned_cols=151  Identities=17%  Similarity=0.226  Sum_probs=121.7

Q ss_pred             hhhhhhcCCCCchhhhhCC-CCCCCHHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHHHhhhhhHHHHHHHHHHHhcCC
Q psy12607          4 INLKLHLQGTDYGSFLANE-PSPLAVSVIDDKLREKLVIEFIHMRNHA-VEPLSTFLDFITYSYMIDNIILLITGTLHQR   81 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~~e-~~~~~~~~I~~~l~~kL~~ef~~lr~~a-~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~   81 (175)
                      +++.-.|.+|.|++.+..- ...-++..|+.+++...........+.. ..+...+-.++..+.++.|+..+++|+..|.
T Consensus       143 ~e~~~~L~~t~y~~~l~~~~~~~~~l~~~E~~Ld~~y~~~l~~~~~~~~~~~~~~l~~~~~~eiD~~Nl~~ilr~k~~~~  222 (343)
T TIGR02923       143 EEIVEALEGTPYYGPLQEALAGNGDLSPIENELDRMYYEKLLKYVGSPSDDETKLFTEFIKTEVDIRNLKTLLRLKAAGL  222 (343)
T ss_pred             HHHHHHcCCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5677889999999999651 1124688999999997766655544432 2445678888999999999999999999999


Q ss_pred             CchhhhhhccCCC-Cch--hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHHH
Q psy12607         82 PISELIPKCHPLG-SFE--QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFC  158 (175)
Q Consensus        82 ~~~ell~~chPLG-~F~--~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f~  158 (175)
                      +++++.+.++|-| .++  .+.+++.|.+++++.+. |.+|||++++.+++.+   +..++..++..++++.++..-+.+
T Consensus       223 ~~e~i~~~li~~g~~l~~~~l~~l~~~~~~~~~~~~-l~~t~y~~~l~~~~~~---~~~~~~~~E~~~d~~~~~~~~~~~  298 (343)
T TIGR02923       223 SPDEIMPYTIPGGYELDEEKLAPLAHIESIDEVVSA-LDGTKYGEDISEVLSE---EEKSVAVFERALDEYLIKMATKLS  298 (343)
T ss_pred             CHHHHHhhccCcccccCHHHHHHHHcCCCHHHHHHH-HhcCcchHHHHHHHhh---ccCcHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999 556  78999999999999976 9999999999988751   237888898888887776665444

The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.

>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.68  E-value=1.8e-07  Score=80.55  Aligned_cols=154  Identities=16%  Similarity=0.211  Sum_probs=95.4

Q ss_pred             hhhhhhcCCCCchhhhhCCCC---CCCHHHHHHHHHHHHHH-HHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhc
Q psy12607          4 INLKLHLQGTDYGSFLANEPS---PLAVSVIDDKLREKLVI-EFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLH   79 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~~e~~---~~~~~~I~~~l~~kL~~-ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~   79 (175)
                      +|+.-.|++|.|++.|..-..   ......++..+....-. -+.............+-+++..+-|+-||..+++++..
T Consensus       135 ~e~~~~L~~t~y~~~l~~~~~~~~~~~~~~~~~~l~~~yy~~~~~~~~~~~~~~~~~l~~~~~~~iD~~Ni~~~~R~k~~  214 (337)
T PF01992_consen  135 EELIEALKGTPYYEVLRQALEDYEQQDFFYIEEALDDRYYEDLLKAAKKLSGSEREILRELLGMEIDLTNIKTILRAKKY  214 (337)
T ss_dssp             HHHH-HTTT-THHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---TSS-HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhcCcchHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            567788999999999966211   12455565555554433 33444433445555666899999999999999999999


Q ss_pred             CCCchhhhhhccCCCCch--hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHH
Q psy12607         80 QRPISELIPKCHPLGSFE--QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDF  157 (175)
Q Consensus        80 ~~~~~ell~~chPLG~F~--~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f  157 (175)
                      |.+.+++...+.|-|.++  .+.+++.++|++++... |.+||+++.+.....+  ..+.++..++-.++++.++...+.
T Consensus       215 ~~~~~~i~~ll~~~g~l~~~~l~~l~~~~~~~~~~~~-l~~t~y~~~~~~~~~~--~~~~~~~~~E~~~~~~~~~~~~~~  291 (337)
T PF01992_consen  215 GLSPEEIKQLLPPGGRLSKDRLKALAEAEDVEEFLEA-LSGTPYGKLLSDAEEE--YEETSLSELERALDRYLLKKALRL  291 (337)
T ss_dssp             ---GGGT-----SS-SS--H-HHHHHHHTT-GGGGGS--TTSTTGGGTT--S---------HHHHHHHHHHHHHH-HHHG
T ss_pred             CCCHhhhhccCCCCCeeCHHHHHHHHHCCCHHHHHHH-HhcCchHHHHHHhhhh--hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999997778888777  59999999999999977 9999999999887644  333368888888888888766665


Q ss_pred             HHh
Q psy12607        158 CKK  160 (175)
Q Consensus       158 ~~~  160 (175)
                      +..
T Consensus       292 ~~~  294 (337)
T PF01992_consen  292 SRR  294 (337)
T ss_dssp             GTT
T ss_pred             Hhh
Confidence            543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.

>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]

Probab=98.40  E-value=7.5e-06  Score=73.17  Aligned_cols=152  Identities=16%  Similarity=0.191  Sum_probs=120.2

Q ss_pred             hhhhhhcCCCCchhhhh----CCCCCCCHHHHHHHHHHHHHHHHHHHH-hcCccchHHHHHHHhhhhhHHHHHHHHHHHh
Q psy12607          4 INLKLHLQGTDYGSFLA----NEPSPLAVSVIDDKLREKLVIEFIHMR-NHAVEPLSTFLDFITYSYMIDNIILLITGTL   78 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~----~e~~~~~~~~I~~~l~~kL~~ef~~lr-~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~   78 (175)
                      +++...+.+|.|-..+.    +.....+...|+-.+++.-...+.-.. +-..++  .|.+|+.-.=|+.|+..+++|+.
T Consensus       142 eev~~~~~~~~y~~~~~~~~~~y~~~~~i~~le~~Ldk~Yye~l~~~~~~~~~~~--~~~~~~~~eID~~Ni~~~lr~k~  219 (346)
T COG1527         142 EEVVETLEGTTYLAPLEEALRDYEDTGDIEPLENALDKAYYEDLLRSVNSEKGDE--LLREFLRLEIDRRNIKTALRGKA  219 (346)
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence            45667788888877775    333446889999999988766554432 222222  67788888899999999999999


Q ss_pred             cCCCchhhhhhccCCCCch--hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhcccccccc-ccHHHHHHHHHHHHHHHHH
Q psy12607         79 HQRPISELIPKCHPLGSFE--QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDE-MNIEIIRNTLYKAYLEAFY  155 (175)
Q Consensus        79 ~~~~~~ell~~chPLG~F~--~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e-~nieiir~~L~K~yLE~fy  155 (175)
                      .+.+.+.....+.|-|.++  .+..|..+.++.++.+. |.+|+|++.+......  +.+ ..+......+.|+++...-
T Consensus       220 ~~~~~e~~~~li~~gg~l~~~~~~~l~~~ed~~~~~~~-l~~t~yg~~l~~~~~~--~~~~~~~~~~e~~l~~~~~~~~~  296 (346)
T COG1527         220 SELSEELMESLIPDGGSLDASALRDLAEAEDILDVLEA-LEGTSYGDALSEYREE--YEEGGSIAVFEEALRKALLKRAK  296 (346)
T ss_pred             cCCcHHHHHHhcCCCccCCHHHHHHHHhcccHHHHHHH-cccCchHHHHHHHHHH--hhcCCchhHHHHHHHHHHHHHHH
Confidence            7777777777777777888  89999999999999998 9999999999998877  888 5666666779999999999


Q ss_pred             HHHHh
Q psy12607        156 DFCKK  160 (175)
Q Consensus       156 ~f~~~  160 (175)
                      ++++.
T Consensus       297 ~~a~~  301 (346)
T COG1527         297 EFAQY  301 (346)
T ss_pred             HHhhc
Confidence            88765

>PF10962 DUF2764: Protein of unknown function (DUF2764); InterPro: IPR024492 This bacterial family of proteins has no known function

Probab=84.67  E-value=2.5  Score=36.89  Aligned_cols=85  Identities=21%  Similarity=0.329  Sum_probs=52.9

Q ss_pred             cCccchHHHHHHHhhhhhHHH-HHHHHHHHhcCCCchhhhhhccCCCCchhhhHhhhcCCHHHHHHHHhh----cCCCch
Q psy12607         49 HAVEPLSTFLDFITYSYMIDN-IILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLV----DTPLAP  123 (175)
Q Consensus        49 ~a~~~l~~fld~~~~~~mIdN-v~~Li~g~~~~~~~~ell~~chPLG~F~~l~al~~a~~~~el~~~vL~----dTpl~~  123 (175)
                      +-++.=.+.++++...||+.| +..+.+|+    +      ..+|.|.|+       ...+++++.++-.    +.-+..
T Consensus        35 ~lS~~D~~~~~ll~~~~D~~n~l~~l~~~~----~------~~~~~g~~~-------~~el~~~~~~~~~~~~~~~~lP~   97 (271)
T PF10962_consen   35 NLSAKDAKLIDLLYLYFDNENLLRLLWKGE----P------APDPRGNYS-------EEELEELIKAQKEGDEPDKGLPS   97 (271)
T ss_pred             hcCHHHHHHHHHHHHhccHHHHHHHHHcCC----C------CcCcccCcC-------HHHHHHHHHHHHhcccccccccH
Confidence            344444678899999999999 55554433    1      126899884       3445555555333    447889


Q ss_pred             Hhhhhcccccc--cc-ccHHHHHHHHHHHHHH
Q psy12607        124 FFVDCISEQDL--DE-MNIEIIRNTLYKAYLE  152 (175)
Q Consensus       124 yf~~~l~~~~l--~e-~nieiir~~L~K~yLE  152 (175)
                      |+.+++.+  +  .+ .+--..++.|...|++
T Consensus        98 y~~~Fl~~--y~~~~~e~~~~~e~~L~~~yy~  127 (271)
T PF10962_consen   98 YLKDFLED--YLNEEAEERIRHEDRLVAAYYA  127 (271)
T ss_pred             HHHHHHHH--HcccchhhccchHHHHHHHHHH
Confidence            99999866  4  22 3334466777665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
1v9m_A	323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	5e-26

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M* Length = 323

 Score =  100 bits (249), Expect = 5e-26
 Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 10/154 (6%)

Query: 9   HLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMID 68
            L  T YG  LA +  P     +D  +          +           +  +     + 
Sbjct: 39  LLSETVYGGELAGQGLPD----VDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLH 94

Query: 69  NIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVD-TPLAPFFVD 127
           N+  L+      RP  E++     L   E     + A  PA +   + V   PLA     
Sbjct: 95  NLQALLRAKATGRPFEEVLLLPGTL-REEVWRQAYEAQDPAGMAQVLAVPGHPLARALRA 153

Query: 128 CISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKL 161
            + E      ++  +   L K + E      K L
Sbjct: 154 VLRE----TQDLARVEALLAKRFFEDVAKAAKGL 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
1v9m_A	323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	99.97
1v9m_A	323	V-type ATP synthase subunit C; VOV1-ATPase, V-type	98.1

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*

Probab=99.97  E-value=2.5e-30  Score=220.09  Aligned_cols=159  Identities=16%  Similarity=0.158  Sum_probs=139.7

Q ss_pred             chhhhhhcCCCCchhhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCC
Q psy12607          3 NINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRP   82 (175)
Q Consensus         3 ~~dlk~~L~~TDYg~~L~~e~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~   82 (175)
                      -+|++.+|++|+||+++.+.+    +..|+.+|+.+++++|+.++++++++.++|+++++++|||+||+.+++|+.+|++
T Consensus        33 l~e~~~~L~~t~Y~~~l~~~~----~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~di~Nik~ilr~~~~~~~  108 (323)
T 1v9m_A           33 FADFLRLLSETVYGGELAGQG----LPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRP  108 (323)
T ss_dssp             HHHHHHHHHTSGGGGGCCCSS----HHHHHHHHHHHHHHHTTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhcCchHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            368999999999999998753    7899999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCCCchh--hhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHh
Q psy12607         83 ISELIPKCHPLGSFEQ--MEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKK  160 (175)
Q Consensus        83 ~~ell~~chPLG~F~~--l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f~~~  160 (175)
                      .+++.  ||| |.|+.  ++++..|+|++|++. +|.+|||++++..+...  +.+.|++.+++.|+|+|+++++++|++
T Consensus       109 ~~~l~--~~~-g~~~~~~l~~l~~a~~~~el~~-~L~~t~y~~~l~~~~~~--~~~~~~~~~e~~Ldk~y~~~~~~~~~~  182 (323)
T 1v9m_A          109 FEEVL--LLP-GTLREEVWRQAYEAQDPAGMAQ-VLAVPGHPLARALRAVL--RETQDLARVEALLAKRFFEDVAKAAKG  182 (323)
T ss_dssp             GGGCC--CCS-CSSCHHHHHHHHHSSSHHHHHH-HHHTTTCHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHHHC----
T ss_pred             ccccc--cCC-CCCCHHHHHHHHhCCCHHHHHH-HHhccccchHHHHHHHH--HHcCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            99987  899 99995  999999999999995 69999999888877654  556699999999999999999999999


Q ss_pred             cCCchHHHHHHhhc
Q psy12607        161 LGGTTADTMCEILS  174 (175)
Q Consensus       161 lgg~t~~vM~~iL~  174 (175)
                      +||   ++|++++.
T Consensus       183 ~~~---~~l~~~~~  193 (323)
T 1v9m_A          183 LDQ---PALRDYLA  193 (323)
T ss_dssp             ------CHHHHHHH
T ss_pred             cCh---HHHHHHHH
Confidence            887   67887763

>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*

Probab=98.10  E-value=9.5e-06  Score=68.35  Aligned_cols=130  Identities=8%  Similarity=0.037  Sum_probs=94.4

Q ss_pred             hhhhhhcCCCCchhhhhCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhc
Q psy12607          4 INLKLHLQGTDYGSFLANE----PSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLH   79 (175)
Q Consensus         4 ~dlk~~L~~TDYg~~L~~e----~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~   79 (175)
                      +++.-.|++|.||.+++.-    .. .+...++-+|++..-+.+....+...+  ..+-+|+..+-++.|+..+++++..
T Consensus       134 ~el~~~L~~t~y~~~l~~~~~~~~~-~~~~~~e~~Ldk~y~~~~~~~~~~~~~--~~l~~~~~~~iD~~Ni~~~lr~~~~  210 (323)
T 1v9m_A          134 AGMAQVLAVPGHPLARALRAVLRET-QDLARVEALLAKRFFEDVAKAAKGLDQ--PALRDYLALEVDAENLRTAFKLQGS  210 (323)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHhccccchHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5677789999888776551    12 278889999998887777544433333  5677778889999999999999999


Q ss_pred             CCCchhhhhhccCCCC-ch--hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHH
Q psy12607         80 QRPISELIPKCHPLGS-FE--QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYL  151 (175)
Q Consensus        80 ~~~~~ell~~chPLG~-F~--~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yL  151 (175)
                      |.+   +...++|-|. ++  .+.+++.+.+  ++... |.+|||+++|...         ++..++..+++..+
T Consensus       211 ~~~---i~~~li~~G~~l~~~~l~~l~~~~~--~~~~~-l~~t~Y~~~~~~~---------~~~~~E~~~~~~~~  270 (323)
T 1v9m_A          211 GLA---PDAFFLKGGRFVDRVRFARLMEGDY--AVLDE-LSGTPFSGLSGVR---------DLKALERGLRCVLL  270 (323)
T ss_dssp             CCC---GGGTCCSSCSSCCHHHHHHHHTTCG--GGGGS-CTTSTTGGGTTCC---------SHHHHHHHHHHHHH
T ss_pred             CCC---HHHhccCCCCccCHHHHHHHHhCcH--HHHHH-HcCCCHHHHhccC---------CHHHHHHHHHHHHH
Confidence            986   6667789997 76  7899998888  77744 8999999988664         44455555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1v9ma_	319	f.40.1.1 (A:) V-type ATP synthase subunit C {Therm	3e-23

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]} Length = 319

class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

 Score = 91.6 bits (227), Expect = 3e-23
 Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 17/172 (9%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +    L  T YG  LA +  P     +D  +          +           +  +   
Sbjct: 31  DFLRLLSETVYGGELAGQGLPD----VDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLR 86

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSF--EQMEAIHVAATPAELYNAVLV-DTPL 121
             + N+  L+      RP  E++      G+   E     + A  PA +   + V   PL
Sbjct: 87  NDLHNLQALLRAKATGRPFEEVL---LLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPL 143

Query: 122 APFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           A            +  ++  +   L K + E      K   G     + + L
Sbjct: 144 ARAL----RAVLRETQDLARVEALLAKRFFEDVAKAAK---GLDQPALRDYL 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1v9ma_	319	V-type ATP synthase subunit C {Thermus thermophilu	99.9
d1v9ma_	319	V-type ATP synthase subunit C {Thermus thermophilu	97.06

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]}

class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=6.6e-24  Score=178.39  Aligned_cols=158  Identities=15%  Similarity=0.196  Sum_probs=135.4

Q ss_pred             chhhhhhcCCCCchhhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCC
Q psy12607          3 NINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRP   82 (175)
Q Consensus         3 ~~dlk~~L~~TDYg~~L~~e~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~   82 (175)
                      .+|+...|++|+||+++++    .+...|+++|+.+++++|+.++++++++++.|++++..+|||+||+.+|+|+.+|++
T Consensus        29 ~~e~~~~L~~t~Y~~~l~~----~~~~~ie~~L~~~l~~~~~~l~~~~~~~~k~~~~~~~~~~~i~Nik~llr~~~~g~~  104 (319)
T d1v9ma_          29 FADFLRLLSETVYGGELAG----QGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRP  104 (319)
T ss_dssp             HHHHHHHHHTSGGGGGCCC----SSHHHHHHHHHHHHHHHTTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCchhhhhc----cChHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3578888999999999976    467899999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhccCCCCch--hhhHhhhcCCHHHHHHHH-hhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHH
Q psy12607         83 ISELIPKCHPLGSFE--QMEAIHVAATPAELYNAV-LVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCK  159 (175)
Q Consensus        83 ~~ell~~chPLG~F~--~l~al~~a~~~~el~~~v-L~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f~~  159 (175)
                      .++++   +|.|.|+  .+..+..+++++++.... ..+||+++.+.++..    ++.|++.+++.|+|+|++++++.+ 
T Consensus       105 ~~~ll---~~~g~~~~~~l~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~d~~~ie~~Ld~~y~~~l~~~~-  176 (319)
T d1v9ma_         105 FEEVL---LLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLR----ETQDLARVEALLAKRFFEDVAKAA-  176 (319)
T ss_dssp             GGGCC---CCSCSSCHHHHHHHHHSSSHHHHHHHHHTTTCHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHhc---cCCCccCHHHHHHHHhCCCHHHHHHHhcccCchHHHHHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHh-
Confidence            99986   8999999  578899999999999763 258899999988753    348999999999999999998655 


Q ss_pred             hcCCchHHHHHHhhc
Q psy12607        160 KLGGTTADTMCEILS  174 (175)
Q Consensus       160 ~lgg~t~~vM~~iL~  174 (175)
                        +|.++++|.++++
T Consensus       177 --~~~~~~~l~~~~~  189 (319)
T d1v9ma_         177 --KGLDQPALRDYLA  189 (319)
T ss_dssp             -------CHHHHHHH
T ss_pred             --ccchHHHHHHHHH
Confidence              5677888888764

>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus thermophilus [TaxId: 274]}

class: Membrane and cell surface proteins and peptides
fold: V-type ATP synthase subunit C
superfamily: V-type ATP synthase subunit C
family: V-type ATP synthase subunit C
domain: V-type ATP synthase subunit C
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.00099  Score=53.87  Aligned_cols=127  Identities=9%  Similarity=0.116  Sum_probs=85.5

Q ss_pred             cCCCCchhhhhC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCCchhhhh
Q psy12607         10 LQGTDYGSFLAN-EPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIP   88 (175)
Q Consensus        10 L~~TDYg~~L~~-e~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~~~ell~   88 (175)
                      ..+|+|+..+.. .....++..|+-.+++..-+..-...+..  .-+.+.+|+..+-|+.||..+++++..+.+.++++ 
T Consensus       138 ~~~~~~~~~~~~~~~~~~d~~~ie~~Ld~~y~~~l~~~~~~~--~~~~l~~~~~~~iD~~Ni~~~~R~k~~~~~~~~~l-  214 (319)
T d1v9ma_         138 VPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKAAKGL--DQPALRDYLALEVDAENLRTAFKLQGSGLAPDAFF-  214 (319)
T ss_dssp             TTTCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHTTTSCCCGGGTC-
T ss_pred             ccCchHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHhc-
Confidence            356788887764 11124788999999888766543332221  23478888999999999999999999999998875 


Q ss_pred             hccCCCCch-hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHH
Q psy12607         89 KCHPLGSFE-QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYL  151 (175)
Q Consensus        89 ~chPLG~F~-~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yL  151 (175)
                        .|.|.+. .......+.+.+++.+. |.+|||+.+.         +..++..++..++++.+
T Consensus       215 --i~~g~~~~~~~~~~~~~~~~~~~~~-L~~t~y~~~~---------~~~~~~~~e~~~~~~~~  266 (319)
T d1v9ma_         215 --LKGGRFVDRVRFARLMEGDYAVLDE-LSGTPFSGLS---------GVRDLKALERGLRCVLL  266 (319)
T ss_dssp             --CSSCSSCCHHHHHHHHTTCGGGGGS-CTTSTTGGGT---------TCCSHHHHHHHHHHHHH
T ss_pred             --CCCCCCCcHHHHHHhhcCHHHHHHH-HHhchhhhhh---------ccccHHHHHHHHHHHHH
Confidence              8999764 22222334566777755 9999987753         22455667766666654