Psyllid ID: psy12638

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MMNEYYHRNLHIEVTHDTYPTRNAGVKAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN
Secondary Structure (PSIPRED)
ccccHHHccccccccccccccccccccHHHccccccccHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccEEEEEcccccccccccEEEEEccccccEEEEEEEcccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mmneyyhrnlhievthdtyptrnagvkaqrfdrgncncyglivpkskregrqdsrklSVYHVNKEQMANLNLIEKLPRIlmiedsnlqsSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKekdenikleclgTLEVINFIgtaasdpisaehfckNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAScqnyliketdapaYMIDLLNDGN
Flexible Loop (DISEMBL)
MMNEYYHRNLhievthdtyptrNAGVkaqrfdrgncNCYGLivpkskregrqdsRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN
Low Complexity Region (SEG)
MMNEYYHRNLHIEVTHDTYPTRNAGVKAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN
Disordered region (IsUnstruct)
****YYHRNLHIEVTHDTYPTRNAGVKAQRFDRGNCNCYGLIVP*************SVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLL****
Disordered Region (DISOPRED)
*****YH*NLHIEV**********GVKAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMN***********NVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLND**
Disordered Region (DISEMBL)
MMNEYYHRNLHIEVTHDTYPTRNAGVKAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN
Disordered Region (DISPRO)
*MNEYYHRNLHIEVTHDTYPTRNAGVKAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMNEYYHRNLHIEVTHDTYPTRNAGVKAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
P70188	793	Kinesin-associated protei	yes	N/A	0.838	0.353	0.398	1e-55
Q92845	792	Kinesin-associated protei	no	N/A	0.838	0.353	0.398	1e-55
Q26626	828	Kinesin-associated protei	yes	N/A	0.838	0.338	0.394	5e-52

>sp|P70188|KIFA3_MOUSE Kinesin-associated protein 3 OS=Mus musculus GN=Kifap3 PE=1 SV=1

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 39/319 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct: 328 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 387

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct: 388 PKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 447

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
            CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct: 448 FCINLAANKRNVQLICEGNGLKMLMKRALKLKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507

Query: 234 IANCVQKEKDENIKLECLGT--------------------------------------LE 255
           +A  +  +++E   +ECLGT                                      LE
Sbjct: 508 LAAQISSDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPFLKDKLKPGAAEDDLVLE 567

Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
           V+  IGT + D   A    K+  +  LI LL   QEDDE V QI+YVFYQ+  H + ++ 
Sbjct: 568 VVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDV 627

Query: 316 LIKETDAPAYMIDLLNDGN 334
           +IKET APAY+IDL++D N
Sbjct: 628 IIKETQAPAYLIDLMHDKN 646

Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Binds to the tail domain of the KIF3A/KIF3B heterodimer to form a heterotrimeric KIF3 complex and may regulate the membrane binding of this complex.
Mus musculus (taxid: 10090)

>sp|Q92845|KIFA3_HUMAN Kinesin-associated protein 3 OS=Homo sapiens GN=KIFAP3 PE=1 SV=2

 Score =  217 bits (552), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 39/319 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct: 328 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 387

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct: 388 PKLTALLGNDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 447

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
            CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct: 448 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507

Query: 234 IANCVQKEKDENIKLECLGTL--------------------------------------E 255
           +A  +  +++E   +ECLGTL                                      E
Sbjct: 508 LAAQISNDEEEEFVIECLGTLANLTIPDLDWELVLKEYKLVPYLKDKLKPGAAEDDLVLE 567

Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
           V+  IGT + D   A    K+  +  LI LL   QEDDE V QI+YVFYQ+  H + ++ 
Sbjct: 568 VVIMIGTVSMDDSCAALLAKSGIIPALIELLNAQQEDDEFVCQIIYVFYQMVFHQATRDV 627

Query: 316 LIKETDAPAYMIDLLNDGN 334
           +IKET APAY+IDL++D N
Sbjct: 628 IIKETQAPAYLIDLMHDKN 646

Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Binds to the tail domain of the KIF3A/KIF3B heterodimer to form a heterotrimeric KIF3 complex and may regulate the membrane binding of this complex.

Homo sapiens (taxid: 9606)

>sp|Q26626|KIFA3_STRPU Kinesin-associated protein 3 OS=Strongylocentrotus purpuratus GN=KAP115 PE=1 SV=1

 Score =  205 bits (521), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/319 (39%), Positives = 185/319 (57%), Gaps = 39/319 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KL +Y  NK +MA   +IE+L +++  +  +L + TL+LL NLSFDT+LR K+IK+G L
Sbjct: 327 KKLGIYVENKNEMAEQQIIERLAKLVPCDHEDLLNITLRLLLNLSFDTDLRGKMIKLGML 386

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PK V LL    H+ ++L +LYH+S +D+ K+MF YT+C+ ++M M+L    +  +  LVA
Sbjct: 387 PKFVELLANDNHRLVVLCVLYHVSQDDKAKSMFTYTDCIPMIMKMMLESPTERLEIELVA 446

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNV-KHYFVDYIGD 233
           L INLA N  NA+L+ +   L LLM +A   ++ LLLK+IRN+S H    K  F++YI D
Sbjct: 447 LGINLACNKHNAQLICEGNGLRLLMRRALKFRDPLLLKMIRNISQHDGPSKAQFIEYISD 506

Query: 234 IANCVQKEKDENIKLECLG--------------------------------------TLE 255
           +A  +++  DE + +E LG                                       LE
Sbjct: 507 VARIIKESNDEELVVEALGIMANLTIPDLDYEMIINEFGLVPWIKEKLEPGAAEDDLVLE 566

Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
           V+  +GT A+D   A    K+  +  LI LL   QEDDEIV QI+YVFYQ+  H + +  
Sbjct: 567 VVMLVGTVATDDSCAAMLAKSGIIQSLIELLNAKQEDDEIVCQIVYVFYQMVFHEATREV 626

Query: 316 LIKETDAPAYMIDLLNDGN 334
           +IK T APAY+IDL++D N
Sbjct: 627 IIKLTQAPAYLIDLMHDKN 645

Binds to the tail domain of the KRP85/KRP95 heterodimer to form a heterotrimeric kinesin-II complex and may regulate the spindle vesicle targeting of this complex.

Strongylocentrotus purpuratus (taxid: 7668)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
157167471	915	kinesin-associated protein, putative [Ae	0.835	0.304	0.430	4e-68
170044358	933	kinesin-associated protein [Culex quinqu	0.835	0.299	0.427	1e-67
347963342	945	AGAP000187-PA [Anopheles gambiae str. PE	0.835	0.295	0.430	8e-67
312374570	1220	hypothetical protein AND_15778 [Anophele	0.835	0.228	0.418	7e-65
307205411	852	Kinesin-associated protein 3 [Harpegnath	0.838	0.328	0.431	2e-64
345485207	845	PREDICTED: kinesin-associated protein 3-	0.904	0.357	0.415	5e-64
350410846	849	PREDICTED: kinesin-associated protein 3-	0.838	0.329	0.428	1e-63
332018840	843	Kinesin-associated protein 3 [Acromyrmex	0.904	0.358	0.402	2e-63
340720002	849	PREDICTED: kinesin-associated protein 3-	0.838	0.329	0.425	3e-63
91082349	805	PREDICTED: similar to kinesin-associated	0.832	0.345	0.421	7e-63

>gi|157167471|ref|XP_001654812.1| kinesin-associated protein, putative [Aedes aegypti] gi|108882437|gb|EAT46662.1| AAEL002152-PA [Aedes aegypti]

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 137/318 (43%), Positives = 208/318 (65%), Gaps = 39/318 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS+   NK++M  LN++EKLPR+L  +  +L   TLKLLFNLSFD  LR K+I++GFL
Sbjct: 481 KKLSIVRDNKDEMYELNIVEKLPRLLQSQ-KDLVQVTLKLLFNLSFDARLRAKMIRVGFL 539

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PKLV+ L + KH +I+ ++LYH+S++D++K+MF YT+C+ ++ +MLL+  + ++D  L+A
Sbjct: 540 PKLVTFLSDDKHHEIVTKILYHMSLDDKIKSMFTYTDCVPVVTDMLLLNLNQKSDPDLIA 599

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDI 234
           L INLALN RNA +M++N +L  LM +AF  ++ L++K+IRN+S+H +++ +FVD++GD+
Sbjct: 600 LGINLALNKRNAAMMIENNRLHNLMSRAFKYQDTLMMKLIRNISLHESLRMHFVDFVGDL 659

Query: 235 ANCVQKEKDENIKLECLG--------------------------------------TLEV 256
           A  + +  DE   +ECLG                                       LE 
Sbjct: 660 AKILTECDDEEFTVECLGMLGNLALPDLDYSQIIHNFNLIPLIRNMLVPGKYKDDLVLET 719

Query: 257 INFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYL 316
           + F+GT ASD   A   CK   +  LI LLK  QEDDE+VLQI++VF Q+ R+ S + Y+
Sbjct: 720 VVFLGTCASDESCAMLLCKADVILSLIELLKAKQEDDEMVLQIVFVFQQVLRNESTRVYM 779

Query: 317 IKETDAPAYMIDLLNDGN 334
           IKET++PAY+IDL++D N
Sbjct: 780 IKETESPAYLIDLMHDKN 797

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044358|ref|XP_001849818.1| kinesin-associated protein [Culex quinquefasciatus] gi|167867535|gb|EDS30918.1| kinesin-associated protein [Culex quinquefasciatus]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/318 (42%), Positives = 208/318 (65%), Gaps = 39/318 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS+   NK++M  LN++EKLPR+L  +  +L   TLKLLFNLSFD  LR K+I++GFL
Sbjct: 487 KKLSIVRDNKDEMYELNIVEKLPRLLQSQ-KDLVQVTLKLLFNLSFDARLRAKMIRVGFL 545

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PKLV+ L + KH +I+ ++LYH+S++D++K+MF YT+C+ ++ +MLL+  + ++D  L+A
Sbjct: 546 PKLVTFLSDDKHHEIVTKILYHMSLDDKIKSMFTYTDCVPVVTDMLLLNLNQKSDPDLIA 605

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDI 234
           L INLALN RNA +M++N +L  LM +AF  ++ L++K+IRN+S+H +++ +FVD++GD+
Sbjct: 606 LGINLALNKRNAAMMIENNRLHNLMSRAFKFQDTLMMKLIRNISLHDSLRMHFVDFVGDL 665

Query: 235 ANCVQKEKDENIKLECLG--------------------------------------TLEV 256
           +  + +  DE   +ECLG                                       LE 
Sbjct: 666 SKILTECDDEEFTVECLGILGNLALPDLDYSQIIHNFNLIPLIRNMLVPGKYKDDMVLET 725

Query: 257 INFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYL 316
           + F+GT ASD   A   CK   +  LI LLK  QEDDE+VLQI++VF Q+ R+ S + Y+
Sbjct: 726 VVFLGTCASDESCAMLLCKADVILSLIELLKAKQEDDEMVLQIVFVFQQVLRNESTRVYM 785

Query: 317 IKETDAPAYMIDLLNDGN 334
           IKET++PAY+IDL++D N
Sbjct: 786 IKETESPAYLIDLMHDKN 803

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963342|ref|XP_310949.5| AGAP000187-PA [Anopheles gambiae str. PEST] gi|333467245|gb|EAA06454.5| AGAP000187-PA [Anopheles gambiae str. PEST]

 Score =  259 bits (663), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 137/318 (43%), Positives = 206/318 (64%), Gaps = 39/318 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS+   NKE+M  LN++EKLPR+L  +  +L   TLKLLFNLSFD  LR K+I++G L
Sbjct: 511 KKLSIVLDNKEEMYELNIVEKLPRLLQSQ-KDLVQMTLKLLFNLSFDARLRAKMIRVGLL 569

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PKLV+ L + KH  I+ ++LYH+S++D+VK+MF YT+C+ ++++MLL+  + ++D  L+A
Sbjct: 570 PKLVTFLSDDKHHGIVTKILYHMSLDDKVKSMFTYTDCVPVVVDMLLLNLNQKSDPDLIA 629

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDI 234
           L INLALN RNA +M++N +L  LM +AF  ++ L++K+IRN+S+H  ++ +FVD++GD+
Sbjct: 630 LGINLALNRRNAAMMIENNRLHSLMSRAFKCQDTLIMKMIRNISLHDTLRPHFVDFVGDL 689

Query: 235 ANCVQKEKDENIKLECLG--------------------------------------TLEV 256
           A  + +  +E   +ECLG                                       LE+
Sbjct: 690 AKILTECDEEEFSVECLGILGNLALADLDYSQIIHNFNLIPLIRTMLVPGKYKDDLVLEM 749

Query: 257 INFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYL 316
           + FIGT A D   A   CK   +  LI LLK  QEDDE+VLQI++VF Q+ RH S + Y+
Sbjct: 750 VVFIGTCALDESCAMLLCKADVILSLIELLKAKQEDDEMVLQIVFVFQQVLRHESTRCYM 809

Query: 317 IKETDAPAYMIDLLNDGN 334
           IK+T++PAY+IDL++D N
Sbjct: 810 IKDTESPAYLIDLMHDKN 827

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374570|gb|EFR22099.1| hypothetical protein AND_15778 [Anopheles darlingi]

 Score =  253 bits (647), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 133/318 (41%), Positives = 205/318 (64%), Gaps = 39/318 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KL++   NK++M  LN++EKLPR+L  +  +L   TLKLLFNLSFD  LR K+I++G L
Sbjct: 487 KKLAIVRDNKDEMCELNIVEKLPRLLQSQ-KDLVQMTLKLLFNLSFDARLRAKMIRVGLL 545

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PKLV+ L + KH  I+ ++LYH+S++D++K+MF YT+C+ +++++LL+  +  +D  L+A
Sbjct: 546 PKLVTFLSDDKHHGIVTKILYHMSLDDKIKSMFTYTDCVPVVVDLLLLNLNQRSDPDLIA 605

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDI 234
           L INLALN RNA +M++N +L  LM +AF  ++ +++K+IRN+S+H  ++ +FVD++GD+
Sbjct: 606 LGINLALNRRNAAMMIENNRLHNLMSRAFKCQDTMIMKMIRNISVHDTLRMHFVDFVGDL 665

Query: 235 ANCVQKEKDENIKLECLG--------------------------------------TLEV 256
           A  +    DE   +ECLG                                       LE+
Sbjct: 666 AKILIDCGDEEFTVECLGILGNLALADLDYSQIIHNFNLIPLIRNMLVPGKYKDDLVLEM 725

Query: 257 INFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYL 316
           + F+GT A+D   A   CK   +  LI LLK  QEDDE+VLQI++VF Q+ RH S + Y+
Sbjct: 726 VVFLGTCATDESCAMLLCKADVMLSLIELLKAKQEDDEMVLQIVFVFQQVLRHESTRCYM 785

Query: 317 IKETDAPAYMIDLLNDGN 334
           IKET++PAY+IDL++D N
Sbjct: 786 IKETESPAYLIDLMHDKN 803

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205411|gb|EFN83752.1| Kinesin-associated protein 3 [Harpegnathos saltator]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/322 (43%), Positives = 204/322 (63%), Gaps = 42/322 (13%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS++  NK+ M   N+I+KLPR+L   +++L  STLKLLFNLSFDT LR ++I++G L
Sbjct: 378 KKLSIFRENKDLMTEENIIDKLPRLLQNNNTDLVLSTLKLLFNLSFDTKLRARMIRVGML 437

Query: 115 PKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVL 172
           PK + LL +   K++  IL LLYH S++D+VKAMF  T+C+ ++ NM+LV +DD   + L
Sbjct: 438 PKWIKLLGQADIKNKSTILGLLYHASMDDKVKAMFTNTDCIPMITNMILVCEDDHIRSEL 497

Query: 173 VALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIG 232
           +AL INLA+N++NA+LM++N +L+ L+  AF  ++ L++K+IRN+S H + K  FVD++G
Sbjct: 498 IALGINLAINNKNAQLMVENNRLQGLIRSAFRNQDALIMKMIRNISQHESTKENFVDFVG 557

Query: 233 DIANCVQKEKDENIKLECLG--------------------------------------TL 254
           D A  + +   ++  LE +G                                       L
Sbjct: 558 DFAMALTQSDSQDFILEVIGVLGNLELPDLDYSQIIQRCNLIPWIRNNLVPGKAQDDLVL 617

Query: 255 EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQN 314
           EV+ F+GTAA D   A   CK   +  LI LLK  QEDDE+VLQI+YVFYQI +H S ++
Sbjct: 618 EVVIFLGTAAYDEDCARLLCKADILLSLIELLKAKQEDDEMVLQIIYVFYQIAKHDSTRD 677

Query: 315 YLIKET--DAPAYMIDLLNDGN 334
           YLI+ET  +AP Y+IDL++D N
Sbjct: 678 YLIRETGNEAPGYLIDLMHDKN 699

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485207|ref|XP_001603246.2| PREDICTED: kinesin-associated protein 3-like [Nasonia vitripennis]

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 146/351 (41%), Positives = 212/351 (60%), Gaps = 49/351 (13%)

Query: 25  GVKAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIED 84
           G+  +  DR N +   L+V   K        KLS++  NK+ MA  N+IEKLP++L   +
Sbjct: 351 GMLMKTLDRTNTDLLILVVTFLK--------KLSIFRENKDVMAEGNIIEKLPKLLHNTN 402

Query: 85  SNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL-EEGKHQKIILQLLYHLSIEDRV 143
            +L SSTLKLLFNLSFDT LR K+I++G LPKL+ LL ++  ++  IL LLYH S++D+V
Sbjct: 403 PDLVSSTLKLLFNLSFDTKLRGKMIRVGLLPKLIKLLTQDDVNRSTILGLLYHASMDDKV 462

Query: 144 KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAF 203
           KAMF  T C+ L+M+MLL    ++  + L+ALC+NLA N++NAELM++N +L  L+ +AF
Sbjct: 463 KAMFTNTECIPLMMDMLLASDAEQIMSELIALCVNLATNNKNAELMVQNNRLRGLVEKAF 522

Query: 204 TQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLG----------- 252
             +N +L+K++RN+S H + K  FV+++GD A  + +   E   LE +G           
Sbjct: 523 KNQNAVLMKIVRNISQHESTKENFVEFVGDFAMALTQSDCEEFVLEIVGVMGNLSLPDLD 582

Query: 253 ---------------------------TLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
                                       LE +  +GTAA+D   A+  CK   +  LI L
Sbjct: 583 YSQILQRCNLIPWIRNTLVPGKAQDDLVLEAVILLGTAAADEDCAQVMCKADMLLSLIEL 642

Query: 286 LKEMQEDDEIVLQILYVFYQICRHASCQNYLIKET--DAPAYMIDLLNDGN 334
           LK  QEDDE+VLQI+YVFYQ+ +H S + YLI+ET  +AP Y+IDL++D N
Sbjct: 643 LKAKQEDDEMVLQIIYVFYQVSKHDSTREYLIRETGNEAPGYLIDLMHDKN 693

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410846|ref|XP_003489156.1| PREDICTED: kinesin-associated protein 3-like [Bombus impatiens]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/322 (42%), Positives = 203/322 (63%), Gaps = 42/322 (13%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS++  NK+ MA  N+IEK+PR+L   +++L  STLKLLFNLSFD  LR K+I++G L
Sbjct: 375 KKLSIFRENKDLMAEKNIIEKIPRLLQSNNADLVLSTLKLLFNLSFDAKLRAKMIRVGIL 434

Query: 115 PKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVL 172
           PKL+ LL +   K++  IL LLYH S++D+VKAMF  T C+ ++ NM+L  +DD+    L
Sbjct: 435 PKLIKLLGQSDIKNKTTILGLLYHASMDDKVKAMFTNTECIQMITNMILNSEDDQPKLEL 494

Query: 173 VALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIG 232
           +AL INLA+N +NA+LM++N +L+ L+ +AF  ++ L++K+IRN+S H + K  FV+++G
Sbjct: 495 IALGINLAINGKNAQLMVENNRLQGLIKKAFRTQDPLIMKMIRNISQHDSTKENFVEFVG 554

Query: 233 DIANCVQKEKDENIKLECLG--------------------------------------TL 254
           D A  + +   ++  LE +G                                       L
Sbjct: 555 DFAMALNQSDSQDFVLEVIGVLGNLELPDLDYSQILHRCDLIPWIRNNLVPGKAPDDLVL 614

Query: 255 EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQN 314
           E++ F+GTAA D   A   CK   +  LI LLK  QEDDE+VLQI+YVFYQI +H S ++
Sbjct: 615 EIVIFLGTAAFDEDCARLLCKADILLSLIELLKAKQEDDEMVLQIIYVFYQISKHDSTRD 674

Query: 315 YLIKET--DAPAYMIDLLNDGN 334
           YLI+ET  +AP Y+IDL++D N
Sbjct: 675 YLIRETGNEAPGYLIDLMHDKN 696

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018840|gb|EGI59397.1| Kinesin-associated protein 3 [Acromyrmex echinatior]

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/350 (40%), Positives = 213/350 (60%), Gaps = 48/350 (13%)

Query: 25  GVKAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIED 84
           G+  +  DR N +   L+V   K        KLS++  NK+ M   N+I+KLPR+L   +
Sbjct: 349 GMLIKTLDRTNTDLLILVVTFLK--------KLSIFRENKDLMIEENIIDKLPRLLQNNN 400

Query: 85  SNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDR 142
           ++L  STLKLLFNLSFD  LR ++I++G LPK + LL +   K++ II+ LLYH S++D+
Sbjct: 401 ADLVLSTLKLLFNLSFDAKLRARMIRVGMLPKWIKLLSQADIKNKSIIVGLLYHASMDDK 460

Query: 143 VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQA 202
           VKAMF  T+C+S++ NM+L  +D+   + L+AL INLA+N++NA+LM++N  L+ L+  A
Sbjct: 461 VKAMFTNTDCISMVTNMVLNSEDEHVRSELIALGINLAINNKNAQLMVENNHLQGLIKIA 520

Query: 203 FTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLG---------- 252
           F  ++ L++K+IRN+S H  +K  FV+++GD A  + +   ++  LE +G          
Sbjct: 521 FRNQDALVMKMIRNISQHDLIKENFVEFVGDFAMALTQSDSQDFILEVVGVLGNLELSDL 580

Query: 253 ----------------------------TLEVINFIGTAASDPISAEHFCKNSTVDLLIN 284
                                        LE++ F+GTAA D   A   CK   +  LI 
Sbjct: 581 DYSQIIQRCNLIPWIRNNLVPGKAQDDIVLEIVIFLGTAAHDEDCARLLCKADILLSLIE 640

Query: 285 LLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
           LLK  QEDDE+VLQI+Y+FYQI +H S ++YLI+ET+AP Y+IDL++D N
Sbjct: 641 LLKAKQEDDEMVLQIIYIFYQIAKHDSTRDYLIRETEAPGYLIDLMHDKN 690

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720002|ref|XP_003398433.1| PREDICTED: kinesin-associated protein 3-like [Bombus terrestris]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/322 (42%), Positives = 203/322 (63%), Gaps = 42/322 (13%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS++  NK+ MA  N+IEK+PR+L   +++L  STLKLLFNLSFD  LR K+I++G L
Sbjct: 375 KKLSIFRENKDLMAEKNIIEKIPRLLQSNNADLVLSTLKLLFNLSFDAKLRAKMIRVGIL 434

Query: 115 PKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVL 172
           PKL+ LL +   K++  IL LLYH S++D+VKAMF  T C+ ++ NM+L  +DD+    L
Sbjct: 435 PKLIKLLGQSDIKNKTTILGLLYHASMDDKVKAMFTNTECIQMITNMILNSEDDQPKLEL 494

Query: 173 VALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIG 232
           +AL INLA+N +NA+LM++N +L+ L+ +AF  ++ L++K+IRN+S H + K  F++++G
Sbjct: 495 IALGINLAINGKNAQLMVENNRLQGLIKKAFRTQDPLIMKMIRNISQHDSTKENFLEFVG 554

Query: 233 DIANCVQKEKDENIKLECLG--------------------------------------TL 254
           D A  + +   ++  LE +G                                       L
Sbjct: 555 DFAMALNQSDSQDFVLEVIGVLGNLELPDLDYSQILHRCDLIPWIRNNLVPGKAPDDLVL 614

Query: 255 EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQN 314
           E++ F+GTAA D   A   CK   +  LI LLK  QEDDE+VLQI+YVFYQI +H S ++
Sbjct: 615 EIVIFLGTAAFDEDCARLLCKADILLSLIELLKAKQEDDEMVLQIIYVFYQISKHDSTRD 674

Query: 315 YLIKET--DAPAYMIDLLNDGN 334
           YLI+ET  +AP Y+IDL++D N
Sbjct: 675 YLIRETGNEAPGYLIDLMHDKN 696

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082349|ref|XP_967170.1| PREDICTED: similar to kinesin-associated protein [Tribolium castaneum] gi|270007174|gb|EFA03622.1| hypothetical protein TcasGA2_TC013715 [Tribolium castaneum]

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 134/318 (42%), Positives = 203/318 (63%), Gaps = 40/318 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS+   NK+ MA +N++EKLP++L     +L   TLKLLFNLSFDT LR +I++IG L
Sbjct: 378 KKLSIMQCNKDAMAGMNVVEKLPKLLESNSPDLVHLTLKLLFNLSFDTKLRFRIVQIGLL 437

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PK +SLL + +HQ+I+L+LLYHLS +D VK  FA   C+ L+ +MLL+   +E D V+VA
Sbjct: 438 PKFISLLSDDRHQEIVLKLLYHLSYDDDVKTQFA--ECVGLITDMLLLNIGNEGDEVMVA 495

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDI 234
           LCINLA +  NA+ M+K  +++ LM++AF  ++ +L+K++RN+S H + K  FV+++GDI
Sbjct: 496 LCINLATDPTNAQQMMKKNRVQSLMMRAFNYQDNMLMKMLRNLSEHKSSKVNFVEFVGDI 555

Query: 235 ANCVQKEKDENIKLECLGTL-----------------EVINFI----------------- 260
           A  V + K+++  +EC+G L                 +++ +I                 
Sbjct: 556 AKAVVESKEDDFVVECVGILSNLSLPELDWAEIFKHFDMLKWIEKVIRNNNTDPELVLQV 615

Query: 261 ----GTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYL 316
               GTAA+D   A+  C+++ +  LI LLK  QEDDEIVLQI++VF+    H +  +YL
Sbjct: 616 VVLLGTAAADEGCAKLLCESNIISALIELLKTHQEDDEIVLQIIFVFFATISHGTNIDYL 675

Query: 317 IKETDAPAYMIDLLNDGN 334
            ++T+APAY+IDLL D N
Sbjct: 676 AEKTEAPAYLIDLLQDNN 693

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
ZFIN|ZDB-GENE-030131-2219	772	kifap3b "kinesin-associated pr	0.811	0.351	0.381	7.3e-49
UNIPROTKB|B7Z7E7	494	KIFAP3 "cDNA FLJ53234, highly	0.811	0.548	0.384	9.8e-48
UNIPROTKB|F5H591	714	KIFAP3 "Kinesin-associated pro	0.811	0.379	0.384	1.1e-47
UNIPROTKB|E1C3C8	722	LOC100859757 "Uncharacterized	0.811	0.375	0.377	1.7e-47
RGD|1305191	772	Kifap3 "kinesin-associated pro	0.811	0.351	0.384	2.2e-47
UNIPROTKB|B1AKU4	752	KIFAP3 "Kinesin-associated pro	0.811	0.360	0.384	2.2e-47
MGI|MGI:107566	793	Kifap3 "kinesin-associated pro	0.811	0.341	0.384	2.6e-47
UNIPROTKB|Q92845	792	KIFAP3 "Kinesin-associated pro	0.811	0.342	0.384	3.4e-47
UNIPROTKB|E2RMU6	792	KIFAP3 "Uncharacterized protei	0.811	0.342	0.384	4.3e-47
UNIPROTKB|E1C3C7	793	LOC100859757 "Uncharacterized	0.811	0.341	0.377	4.4e-47

ZFIN|ZDB-GENE-030131-2219 kifap3b "kinesin-associated protein 3b" [Danio rerio (taxid:7955)]

 Score = 513 (185.6 bits), Expect = 7.3e-49, P = 7.3e-49
 Identities = 106/278 (38%), Positives = 176/278 (63%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  MA ++++EKL  ++  E  +L + TL+LL NLSFDT LR K++ +G L
Sbjct:   329 KKLSIFLENKNDMAEMDVVEKLAHLVPCEHEDLMNVTLRLLHNLSFDTGLRTKMVHVGLL 388

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL +  H+ +++++LYH+S++D+ K+MFAYT+C+  LM ML    ++  D  L++
Sbjct:   389 PKLTALLGDDTHKLVVMRILYHISVDDKSKSMFAYTDCIPQLMQMLFEHGEERIDTELIS 448

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N  N+++M +   L++LM +A   K+ LL+K+IRN+S H   +K  F+DY+GD
Sbjct:   449 FCINLAANKTNSQIMCEGNGLKMLMRRALKLKDPLLMKMIRNISQHDGPLKQLFIDYVGD 508

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  ++KE DE   +ECLGT+  +  I     + +  E+    + V  L + LK    +D
Sbjct:   509 LAAQIKKEGDEEFVIECLGTMANLT-IPDLDWELLLKEY----NLVPFLKDHLKPGSAED 563

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             +++L+++ +   +    SC   L K    PA +I+LLN
Sbjct:   564 DMILEVVIMIGTVSMDDSCAVMLAKSGIIPA-LIELLN 600

GO:0005871 "kinesin complex" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|B7Z7E7 KIFAP3 "cDNA FLJ53234, highly similar to Kinesin-associated protein 3" [Homo sapiens (taxid:9606)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 107/278 (38%), Positives = 173/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct:    30 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 89

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:    90 PKLTALLGNDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 149

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   150 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 209

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  I     + +  E+      V  L + LK    +D
Sbjct:   210 LAAQISNDEEEEFVIECLGTLANLT-IPDLDWELVLKEY----KLVPYLKDKLKPGAAED 264

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   265 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 301

GO:0019894 "kinesin binding" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0016939 "kinesin II complex" evidence=IEA

GO:0046587 "positive regulation of calcium-dependent cell-cell adhesion" evidence=IEA

UNIPROTKB|F5H591 KIFAP3 "Kinesin-associated protein 3" [Homo sapiens (taxid:9606)]

 Score = 499 (180.7 bits), Expect = 1.1e-47, P = 1.1e-47
 Identities = 107/278 (38%), Positives = 173/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct:   250 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 309

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:   310 PKLTALLGNDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 369

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   370 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 429

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  I     + +  E+      V  L + LK    +D
Sbjct:   430 LAAQISNDEEEEFVIECLGTLANLT-IPDLDWELVLKEY----KLVPYLKDKLKPGAAED 484

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   485 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 521

GO:0005871 "kinesin complex" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

UNIPROTKB|E1C3C8 LOC100859757 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 498 (180.4 bits), Expect = 1.7e-47, P = 1.7e-47
 Identities = 105/278 (37%), Positives = 174/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT+LR K++++G L
Sbjct:   328 KKLSIFMENKNDMVEMDIVEKLVKMVPCEHEDLLNITLRLLLNLSFDTSLRNKMVQVGLL 387

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    ++++ + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:   388 PKLTALLANENYKQVAMCILYHISMDDRFKSMFAYTDCIPQLMKMLFECPDERVDLELIS 447

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   448 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  +     + +  E+      V  L + LK    +D
Sbjct:   508 LAAQISNDEEEEFVIECLGTLANLT-LPDLDWELVLKEY----KLVPYLKDKLKPGSAED 562

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   563 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 599

GO:0019894 "kinesin binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0016939 "kinesin II complex" evidence=IEA

GO:0046587 "positive regulation of calcium-dependent cell-cell adhesion" evidence=IEA

RGD|1305191 Kifap3 "kinesin-associated protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 500 (181.1 bits), Expect = 2.2e-47, P = 2.2e-47
 Identities = 107/278 (38%), Positives = 173/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct:   328 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 387

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:   388 PKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 447

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   448 FCINLAANKRNVQLICEGNGLKMLMKRALKLKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  I     + +  E+      V  L + LK    +D
Sbjct:   508 LAAQISSDEEEEFVIECLGTLANLT-IPDLDWELVLKEY----KLVPFLKDKLKPGAAED 562

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   563 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 599

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005871 "kinesin complex" evidence=IEA

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007017 "microtubule-based process" evidence=ISO

GO:0008104 "protein localization" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0016939 "kinesin II complex" evidence=ISO

GO:0019894 "kinesin binding" evidence=IEA;ISO

GO:0046587 "positive regulation of calcium-dependent cell-cell adhesion" evidence=ISO

UNIPROTKB|B1AKU4 KIFAP3 "Kinesin-associated protein 3" [Homo sapiens (taxid:9606)]

 Score = 499 (180.7 bits), Expect = 2.2e-47, P = 2.2e-47
 Identities = 107/278 (38%), Positives = 173/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct:   288 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 347

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:   348 PKLTALLGNDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 407

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   408 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 467

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  I     + +  E+      V  L + LK    +D
Sbjct:   468 LAAQISNDEEEEFVIECLGTLANLT-IPDLDWELVLKEY----KLVPYLKDKLKPGAAED 522

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   523 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 559

GO:0019894 "kinesin binding" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0016939 "kinesin II complex" evidence=IEA

GO:0046587 "positive regulation of calcium-dependent cell-cell adhesion" evidence=IEA

MGI|MGI:107566 Kifap3 "kinesin-associated protein 3" [Mus musculus (taxid:10090)]

 Score = 500 (181.1 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 107/278 (38%), Positives = 173/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct:   328 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 387

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:   388 PKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 447

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   448 FCINLAANKRNVQLICEGNGLKMLMKRALKLKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  I     + +  E+      V  L + LK    +D
Sbjct:   508 LAAQISSDEEEEFVIECLGTLANLT-IPDLDWELVLKEY----KLVPFLKDKLKPGAAED 562

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   563 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 599

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0005083 "small GTPase regulator activity" evidence=TAS

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005813 "centrosome" evidence=ISO

GO:0005871 "kinesin complex" evidence=IEA

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007017 "microtubule-based process" evidence=IPI

GO:0007266 "Rho protein signal transduction" evidence=TAS

GO:0008104 "protein localization" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0016939 "kinesin II complex" evidence=ISO;IPI

GO:0019894 "kinesin binding" evidence=ISO

GO:0046587 "positive regulation of calcium-dependent cell-cell adhesion" evidence=IMP

GO:0050790 "regulation of catalytic activity" evidence=TAS

UNIPROTKB|Q92845 KIFAP3 "Kinesin-associated protein 3" [Homo sapiens (taxid:9606)]

 Score = 499 (180.7 bits), Expect = 3.4e-47, P = 3.4e-47
 Identities = 107/278 (38%), Positives = 173/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct:   328 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 387

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:   388 PKLTALLGNDNYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 447

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   448 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  I     + +  E+      V  L + LK    +D
Sbjct:   508 LAAQISNDEEEEFVIECLGTLANLT-IPDLDWELVLKEY----KLVPYLKDKLKPGAAED 562

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   563 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 599

GO:0008104 "protein localization" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0046587 "positive regulation of calcium-dependent cell-cell adhesion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007017 "microtubule-based process" evidence=ISS

GO:0016939 "kinesin II complex" evidence=ISS;IDA

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0072383 "plus-end-directed vesicle transport along microtubule" evidence=TAS

GO:0019894 "kinesin binding" evidence=IPI

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000794 "condensed nuclear chromosome" evidence=IDA

UNIPROTKB|E2RMU6 KIFAP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 498 (180.4 bits), Expect = 4.3e-47, P = 4.3e-47
 Identities = 107/278 (38%), Positives = 173/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT LR K++++G L
Sbjct:   328 KKLSIFMENKNDMVEMDIVEKLVKMIPCEHEDLLNITLRLLLNLSFDTGLRNKMVQVGLL 387

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    +++I + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:   388 PKLTALLGNENYKQIAMCVLYHISMDDRFKSMFAYTDCIPQLMKMLFECSDERIDLELIS 447

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   448 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  I     + +  E+      V  L + LK    +D
Sbjct:   508 LAAQISNDEEEEFVIECLGTLANLT-IPDLDWELVLKEY----KLVPYLKDKLKPGAAED 562

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   563 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 599

GO:0019894 "kinesin binding" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

UNIPROTKB|E1C3C7 LOC100859757 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 498 (180.4 bits), Expect = 4.4e-47, P = 4.4e-47
 Identities = 105/278 (37%), Positives = 174/278 (62%)

Query:    55 RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             +KLS++  NK  M  ++++EKL +++  E  +L + TL+LL NLSFDT+LR K++++G L
Sbjct:   328 KKLSIFMENKNDMVEMDIVEKLVKMVPCEHEDLLNITLRLLLNLSFDTSLRNKMVQVGLL 387

Query:   115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
             PKL +LL    ++++ + +LYH+S++DR K+MFAYT+C+  LM ML    D+  D  L++
Sbjct:   388 PKLTALLANENYKQVAMCILYHISMDDRFKSMFAYTDCIPQLMKMLFECPDERVDLELIS 447

Query:   175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
              CINLA N RN +L+ +   L++LM +A   K+ LL+K+IRN+S H    K+ F+DY+GD
Sbjct:   448 FCINLAANKRNVQLICEGNGLKMLMKRALKFKDPLLMKMIRNISQHDGPTKNLFIDYVGD 507

Query:   234 IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD 293
             +A  +  +++E   +ECLGTL  +  +     + +  E+      V  L + LK    +D
Sbjct:   508 LAAQISNDEEEEFVIECLGTLANLT-LPDLDWELVLKEY----KLVPYLKDKLKPGSAED 562

Query:   294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN 331
             ++VL+++ +   +    SC   L K    PA +I+LLN
Sbjct:   563 DLVLEVVIMIGTVSMDDSCAALLAKSGIIPA-LIELLN 599

GO:0019894 "kinesin binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0016939 "kinesin II complex" evidence=IEA

GO:0046587 "positive regulation of calcium-dependent cell-cell adhesion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	334
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	2e-84
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-04

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score =  268 bits (687), Expect = 2e-84
 Identities = 138/319 (43%), Positives = 191/319 (59%), Gaps = 39/319 (12%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           +KLS++  NK +M    +IEKL ++   +  +L + TL+LLFNLSFDT LR K++  G L
Sbjct: 311 KKLSIFDENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGLL 370

Query: 115 PKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA 174
           PKLVSLL+   H  I L +LYHLS +D+ K+MFAYT+C+ +LM M+L    +  D  L+A
Sbjct: 371 PKLVSLLDNDNHHGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIA 430

Query: 175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VKHYFVDYIGD 233
           LCINLALN RNA+L+ + + L+LLM +A   ++ LL+K+IRN+S H    ++ F+DYIGD
Sbjct: 431 LCINLALNKRNAQLICEGQGLDLLMERALKFRDPLLMKMIRNISQHEGPTQNQFIDYIGD 490

Query: 234 IANCVQKEKDENIKLECLGT--------------------------------------LE 255
           +A  ++ E DE   +ECLGT                                      LE
Sbjct: 491 LARIIKNESDEEFVVECLGTLANLTIPDLDWEKIIQEFNLVPWIKTKLQPGAAEDDLVLE 550

Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
           V+   GT A D   A    K+  +D LI LL   QEDDE V QI+YVFYQ+  H + +  
Sbjct: 551 VVIACGTVARDDSCAALLAKSGIIDSLIELLNAKQEDDEFVCQIIYVFYQMLFHEATREV 610

Query: 316 LIKETDAPAYMIDLLNDGN 334
           +IKET APAY+IDL++D N
Sbjct: 611 MIKETQAPAYLIDLMHDKN 629

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 65  EQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLLEE 123
           E +     +  L  +L   D N+Q      L NLS   N   + +++ G LP LV LL+ 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 124 GKH--QKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA 180
                 K  L  L +L+   +  K +      +  L+N LL   +++          NLA
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN-LLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKI-GFLPKLVSLL 121
           N + +     +  L ++L  ED  +  + L  L NL+      + I+   G +PKLV+LL
Sbjct: 41  NIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL 100

Query: 122 E--EGKHQKIILQLLYHLS 138
           +      QK     L +L+
Sbjct: 101 DSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
PF05804	708	KAP: Kinesin-associated protein (KAP)	100.0
KOG1222|consensus	791		100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	100.0
KOG1222|consensus	791		99.96
KOG4224|consensus	550		99.95
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.9
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.89
KOG4224|consensus	550		99.85
KOG0166|consensus	514		99.69
KOG1048|consensus	717		99.5
KOG0166|consensus	514		99.44
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.41
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.34
KOG2122|consensus	2195		99.34
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.32
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.18
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.16
KOG2122|consensus	2195		99.11
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.09
KOG1048|consensus	717		99.09
KOG4199|consensus	461		99.05
KOG4500|consensus	604		99.04
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.96
KOG4199|consensus	461		98.91
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.76
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.76
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.57
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.46
KOG0946|consensus	970		98.43
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.29
KOG4646|consensus	173		98.16
KOG2973|consensus	353		98.12
KOG0168|consensus	1051		98.09
KOG4500|consensus	604		98.04
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.99
KOG2160|consensus	342		97.87
KOG0168|consensus	1051		97.79
KOG2759|consensus	442		97.78
KOG1293|consensus	678		97.76
KOG4646|consensus	173		97.68
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.67
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.66
KOG1293|consensus	678		97.59
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.56
KOG2973|consensus	353		97.56
KOG2759|consensus	442		97.51
PRK09687	280	putative lyase; Provisional	97.49
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.47
PF05536	543	Neurochondrin: Neurochondrin	97.41
PRK09687	280	putative lyase; Provisional	97.2
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.19
KOG2160|consensus	342		97.18
KOG1789|consensus	2235		97.07
PTZ00429	746	beta-adaptin; Provisional	96.99
PF05536	543	Neurochondrin: Neurochondrin	96.91
KOG0946|consensus	970		96.88
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.86
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.6
KOG2734|consensus	536		96.42
PTZ00429	746	beta-adaptin; Provisional	96.34
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.33
COG5369	743	Uncharacterized conserved protein [Function unknow	96.31
KOG2171|consensus	1075		96.21
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.1
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	95.72
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.66
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.54
KOG4413|consensus	524		95.26
KOG1789|consensus	2235		95.22
KOG2734|consensus	536		95.21
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.15
KOG4413|consensus	524		94.89
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.81
KOG3678|consensus	832		94.78
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	94.5
KOG2171|consensus	1075		94.49
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.84
KOG3678|consensus	832		93.81
KOG3036|consensus	293		93.76
COG5369	743	Uncharacterized conserved protein [Function unknow	93.59
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	93.25
KOG4464|consensus	532		93.03
KOG1824|consensus	1233		92.09
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.98
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	91.76
KOG0212|consensus	675		91.47
KOG2023|consensus	885		90.78
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	90.56
PF08045	257	CDC14: Cell division control protein 14, SIN compo	90.54
KOG1059|consensus	877		90.22
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	90.22
KOG1060|consensus	968		90.09
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	89.95
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	89.83
KOG3036|consensus	293		89.81
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	89.06
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	89.01
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	88.92
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.89
TIGR02270	410	conserved hypothetical protein. Members are found	88.82
KOG1061|consensus	734		87.5
PF08045	257	CDC14: Cell division control protein 14, SIN compo	87.13
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	86.32
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.42
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	85.13
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	85.0
KOG0212|consensus	675		84.2
KOG2999|consensus	713		83.63
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	83.48
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	83.27
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	82.56
PF08216	108	CTNNBL: Catenin-beta-like, Arm-motif containing nu	80.58
KOG1077|consensus	938		80.09
KOG1240|consensus	1431		80.07

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=100.00  E-value=6.6e-61  Score=489.62  Aligned_cols=309  Identities=45%  Similarity=0.723  Sum_probs=296.9

Q ss_pred             ccccccccc---hhhhcccCCcceeecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHH
Q psy12638         18 TYPTRNAGV---KAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKL   94 (334)
Q Consensus        18 ~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~   94 (334)
                      +-.|+|+++   .+..|+|.+.+++++.        ++||+|||++.+||..|.+.|+||+|++++++++.++++.|+++
T Consensus       283 e~kM~~~~iV~~Lv~~Ldr~n~ellil~--------v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrl  354 (708)
T PF05804_consen  283 ELKMVNKGIVSLLVKCLDRENEELLILA--------VTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRL  354 (708)
T ss_pred             HHHHHhcCCHHHHHHHHcCCCHHHHHHH--------HHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence            346888888   7888899999988874        89999999999999999999999999999999999999999999


Q ss_pred             HHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHH
Q psy12638         95 LFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA  174 (334)
Q Consensus        95 L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~  174 (334)
                      |+|||||+++|.+|++.|+||+|+++|+++..+.+|+++|||||.++++|.+|++|+|+|.+++++.++++++++.++++
T Consensus       355 L~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~elia  434 (708)
T PF05804_consen  355 LFNLSFDPELRSQMVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIA  434 (708)
T ss_pred             HHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888888889999


Q ss_pred             HHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh-hhhhHHHHHHHhhcCCccchhHHhhcH
Q psy12638        175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY-FVDYIGDIANCVQKEKDENIKLECLGT  253 (334)
Q Consensus       175 ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~-f~~~i~~L~~~l~~~~~~~~~ve~Lg~  253 (334)
                      +++|||.+++|++.|+++||++.|++++++++||+++|++||+|+|+++.+. |.+++++|++++++++++++.+||+|+
T Consensus       435 L~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGi  514 (708)
T PF05804_consen  435 LLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGI  514 (708)
T ss_pred             HHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999965544 999999999999999899999999999


Q ss_pred             H--------------------------------------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchH
Q psy12638        254 L--------------------------------------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEI  295 (334)
Q Consensus       254 l--------------------------------------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~  295 (334)
                      +                                      |+|+++|++|.+++|+.++++.|+++.|+++|+++++|||+
T Consensus       515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~  594 (708)
T PF05804_consen  515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEI  594 (708)
T ss_pred             HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence            8                                      89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        296 VLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       296 vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      |+|++|+||+|++|+++|+.++.++++|+||++||||+|
T Consensus       595 VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N  633 (708)
T PF05804_consen  595 VLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN  633 (708)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999998

>KOG1222|consensus

Probab=100.00  E-value=6.6e-62  Score=463.14  Aligned_cols=310  Identities=43%  Similarity=0.697  Sum_probs=301.0

Q ss_pred             cccccccccc---hhhhcccCCcceeecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHH
Q psy12638         17 DTYPTRNAGV---KAQRFDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLK   93 (334)
Q Consensus        17 ~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~   93 (334)
                      -|--||++.+   .+..|+|+|++++.++        ++||+|||++.|||..|.+.|+|++|++++++.++++++.+++
T Consensus       296 ~ElKMrrkniV~mLVKaLdr~n~~Ll~lv--------~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~  367 (791)
T KOG1222|consen  296 VELKMRRKNIVAMLVKALDRSNSSLLTLV--------IKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLM  367 (791)
T ss_pred             HHHHHHHHhHHHHHHHHHcccchHHHHHH--------HHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHH
Confidence            4567999988   7788899999999998        8999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChhHHHHHHhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHH
Q psy12638         94 LLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV  173 (334)
Q Consensus        94 ~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~  173 (334)
                      +|+|||||..+|.+||..|.+|+++.+|+++.....|+.+||++|+|++.|.+|++|+||+.+++.+.++.++++..+++
T Consensus       368 LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~li  447 (791)
T KOG1222|consen  368 LLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALI  447 (791)
T ss_pred             HhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh-hhhhHHHHHHHhhcCCccchhHHhhc
Q psy12638        174 ALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY-FVDYIGDIANCVQKEKDENIKLECLG  252 (334)
Q Consensus       174 ~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~-f~~~i~~L~~~l~~~~~~~~~ve~Lg  252 (334)
                      ++|+||+.+.+|++.|++++|+..|++++++.+|++++|++||+|+|+...|. |.+|+++|+.++++++.+++.+||+|
T Consensus       448 a~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClG  527 (791)
T KOG1222|consen  448 ALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLG  527 (791)
T ss_pred             HHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997777 99999999999999998999999999


Q ss_pred             HH--------------------------------------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCch
Q psy12638        253 TL--------------------------------------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDE  294 (334)
Q Consensus       253 ~l--------------------------------------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde  294 (334)
                      ++                                      +.|+++||+|.+..|+.+++..|+|+.|++||+++|+|||
T Consensus       528 tlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDE  607 (791)
T KOG1222|consen  528 TLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDE  607 (791)
T ss_pred             HHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccch
Confidence            98                                      7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        295 IVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       295 ~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      +|+|++|+|+++++|..+|+.+.++++.++||||||||||
T Consensus       608 fV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN  647 (791)
T KOG1222|consen  608 FVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKN  647 (791)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhccc
Confidence            9999999999999999999999999999999999999998

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=100.00  E-value=5.6e-33  Score=284.55  Aligned_cols=290  Identities=17%  Similarity=0.249  Sum_probs=249.8

Q ss_pred             cccCCcceeecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHh
Q psy12638         31 FDRGNCNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK  110 (334)
Q Consensus        31 ~~r~~~~~~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~  110 (334)
                      ++|++..++.+|         ++|.+||.+..++.+|.+.|+|+.|+++|++++.+++..++++|.+||++.+||..|.+
T Consensus       259 ~~kQeqLlrv~~---------~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~  329 (708)
T PF05804_consen  259 IRKQEQLLRVAF---------YLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE  329 (708)
T ss_pred             HHHHHHHHHHHH---------HHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            346667777665         89999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHH
Q psy12638        111 IGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAEL  188 (334)
Q Consensus       111 ~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~  188 (334)
                      .|+||+|++++.  +++.+..++.+|+|||+|++.|..|.+.|+||+|+.+|.+.   ..+.-++++++|||.+++++..
T Consensus       330 ~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~  406 (708)
T PF05804_consen  330 SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSM  406 (708)
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHH
Confidence            999999999996  44689999999999999999999999999999999999742   3334467999999999999999


Q ss_pred             HHhcCchHHHHHHHhcCChH----HHHHHHHHHhcCCCchhhh-----------------hhhHHHHHHHhhcCC--ccc
Q psy12638        189 MLKNRQLELLMIQAFTQKNI----LLLKVIRNMSIHSNVKHYF-----------------VDYIGDIANCVQKEK--DEN  245 (334)
Q Consensus       189 i~~~~gl~~Lv~~l~~~~d~----~~~k~l~nLa~~~~~~~~f-----------------~~~i~~L~~~l~~~~--~~~  245 (334)
                      +.+.+++|.+++.+.++.++    .++.++.|+|.+..+.+.+                 ++.+.++++.++.++  .+.
T Consensus       407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~  486 (708)
T PF05804_consen  407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKE  486 (708)
T ss_pred             HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHH
Confidence            99999999999999886543    3688999999998877663                 245566777777665  234


Q ss_pred             hhHHhhcHH-----------HHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc
Q psy12638        246 IKLECLGTL-----------EVINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA  310 (334)
Q Consensus       246 ~~ve~Lg~l-----------eav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~  310 (334)
                      .+++.++-+           ..+.++|++++    +.+|.+.+.+.+++|||.++|.++..+||++++++.++|+++.++
T Consensus       487 ~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~  566 (708)
T PF05804_consen  487 LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP  566 (708)
T ss_pred             HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence            445555543           35778888877    457999999999999999999999999999999999999999988


Q ss_pred             hhhHHHhhcCCcHHHHHHhhhcC
Q psy12638        311 SCQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       311 ~~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      .++..+.+ ++++..|++||+++
T Consensus       567 ~~A~lL~~-sgli~~Li~LL~~k  588 (708)
T PF05804_consen  567 ECAPLLAK-SGLIPTLIELLNAK  588 (708)
T ss_pred             HHHHHHHh-CChHHHHHHHHHhh
Confidence            89976665 78888999999986

>KOG1222|consensus

Probab=99.96  E-value=5.4e-28  Score=231.49  Aligned_cols=280  Identities=18%  Similarity=0.260  Sum_probs=248.4

Q ss_pred             HHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cCCchH
Q psy12638         50 GRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EEGKHQ  127 (334)
Q Consensus        50 A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~~~~~  127 (334)
                      |+++|.+|+.+-.-..+|...++|..||+-|..++.++.-.++++|..||...+||..|++.|+|++|++++  .+|+++
T Consensus       283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~  362 (791)
T KOG1222|consen  283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLR  362 (791)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHH
Confidence            469999999998899999999999999999999999999999999999999999999999999999999999  478899


Q ss_pred             HHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCCh
Q psy12638        128 KIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKN  207 (334)
Q Consensus       128 ~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d  207 (334)
                      ...+.+|+|||+|...|..+...|-+|.|+.++.+.....   .++.++|.+|.|++-..++++.++++.+++.++++.+
T Consensus       363 ~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~---iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~  439 (791)
T KOG1222|consen  363 KATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHG---IALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTG  439 (791)
T ss_pred             HHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccch---hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999997643333   3568899999999999999999999999999998764


Q ss_pred             H----HHHHHHHHHhcCCCchhhh-----------------hhhHHHHHHHhhcCCc--cchhHHhhcHH---------H
Q psy12638        208 I----LLLKVIRNMSIHSNVKHYF-----------------VDYIGDIANCVQKEKD--ENIKLECLGTL---------E  255 (334)
Q Consensus       208 ~----~~~k~l~nLa~~~~~~~~f-----------------~~~i~~L~~~l~~~~~--~~~~ve~Lg~l---------e  255 (334)
                      .    .++.++.|+|-+..+.|.+                 +..+.++++.++++++  +..++..+|.+         |
T Consensus       440 ~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E  519 (791)
T KOG1222|consen  440 SEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSE  519 (791)
T ss_pred             ceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchH
Confidence            3    4577789999998777652                 3567888888888775  56778888877         2


Q ss_pred             --HHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHh
Q psy12638        256 --VINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDL  329 (334)
Q Consensus       256 --av~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~L  329 (334)
                        .+.++|++|+    |.+|++.+.++.+|||+.+.|+++.+.||+++|++.++|+++++..|+. ++...++++.||+|
T Consensus       520 ~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~-Lla~a~~i~tlieL  598 (791)
T KOG1222|consen  520 SFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCAR-LLAPAKLIDTLIEL  598 (791)
T ss_pred             HHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHH-HhCccccHHHHHHH
Confidence              5789999988    6789999999999999999999999999999999999999999999886 55556788899999


Q ss_pred             hhcC
Q psy12638        330 LNDG  333 (334)
Q Consensus       330 L~d~  333 (334)
                      |+.+
T Consensus       599 L~a~  602 (791)
T KOG1222|consen  599 LQAC  602 (791)
T ss_pred             HHhh
Confidence            9864

>KOG4224|consensus

Probab=99.95  E-value=2.6e-26  Score=213.90  Aligned_cols=278  Identities=18%  Similarity=0.244  Sum_probs=237.6

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CC
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EG  124 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~  124 (334)
                      |..|+.++-+|+.+.+||.++...|+++++.+|-++++..++.+++.+|.||.+..++|..+|.+|++|.||.+++  ++
T Consensus       143 qcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~  222 (550)
T KOG4224|consen  143 QCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL  222 (550)
T ss_pred             EeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh
Confidence            4478899999999999999999999999999999999999999999999999999999999999999999999995  66


Q ss_pred             chHHHHHHHHHHccCChhhhhHhhccC--cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHH
Q psy12638        125 KHQKIILQLLYHLSIEDRVKAMFAYTN--CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQA  202 (334)
Q Consensus       125 ~~~~~al~~L~~LS~~~~~r~~i~~t~--~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l  202 (334)
                      +.|.+|...+.+++.|..+|..+++++  .+|.|++++.++ ++.++..+.-.+-||+.+.+.+-.|++.|++|.+++++
T Consensus       223 dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Ll  301 (550)
T KOG4224|consen  223 DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELL  301 (550)
T ss_pred             hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHH
Confidence            789999999999999999999999998  899999999864 44443333345569999999999999999999999999


Q ss_pred             hcCChHHH---HHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhC
Q psy12638        203 FTQKNILL---LKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKN  276 (334)
Q Consensus       203 ~~~~d~~~---~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~  276 (334)
                      .+.--|.+   +.|+||+|.|+.+...+  .|++.+|++++.-+++++..+.+..++      -.+|. ...+...+.+.
T Consensus       302 qs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstL------rnLAasse~n~~~i~es  375 (550)
T KOG4224|consen  302 QSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL------RNLAASSEHNVSVIRES  375 (550)
T ss_pred             hCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHH------HHHhhhhhhhhHHHhhc
Confidence            77665654   66899999999988774  589999999998888877766655444      66665 55677899999


Q ss_pred             CchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      |.||.++.|+..+.-  ++.-.+--||.+++-++..+..+.. .++...||.+.-|.|
T Consensus       376 gAi~kl~eL~lD~pv--svqseisac~a~Lal~d~~k~~lld-~gi~~iLIp~t~s~s  430 (550)
T KOG4224|consen  376 GAIPKLIELLLDGPV--SVQSEISACIAQLALNDNDKEALLD-SGIIPILIPWTGSES  430 (550)
T ss_pred             CchHHHHHHHhcCCh--hHHHHHHHHHHHHHhccccHHHHhh-cCCcceeecccCccc
Confidence            999999999986542  5777788899999999999988776 566668888876653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.90  E-value=8.9e-22  Score=217.66  Aligned_cols=286  Identities=13%  Similarity=0.134  Sum_probs=217.9

Q ss_pred             CcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh---hHHHH-HHhcCChHHHHH
Q psy12638         44 PKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT---NLREK-IIKIGFLPKLVS  119 (334)
Q Consensus        44 ~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~---~~r~~-iv~~g~Ip~Lv~  119 (334)
                      +..|..|++.|.+||.+++||..+...|+||+|+++|++++.+.++.|+++|++||.++   ++|.. +++.|+||+|++
T Consensus        72 ~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~  151 (2102)
T PLN03200         72 LGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWD  151 (2102)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999974   45644 568999999999


Q ss_pred             hccCCc-----hHHHHHHHHHHccCChhhhh-HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhc
Q psy12638        120 LLEEGK-----HQKIILQLLYHLSIEDRVKA-MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKN  192 (334)
Q Consensus       120 lL~~~~-----~~~~al~~L~~LS~~~~~r~-~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~  192 (334)
                      +++++.     .++.++.+|+|||.+.+++. .+.+.|++|.|+++|.+ +++..+.+++.++.+++ .+++.++.+.+.
T Consensus       152 lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee~~~aVIea  230 (2102)
T PLN03200        152 QLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS-GNSDAQANAASLLARLMMAFESSISKVLDA  230 (2102)
T ss_pred             HHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence            997653     45667899999999988875 56899999999999986 56676667766666665 457789999999


Q ss_pred             CchHHHHHHHhcCChHH----HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCc--------c---chhH------
Q psy12638        193 RQLELLMIQAFTQKNIL----LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKD--------E---NIKL------  248 (334)
Q Consensus       193 ~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~--------~---~~~v------  248 (334)
                      |++|+|++++.+++++.    +..+++|+|.+++..+. .  .|+++.|++.+.....        +   +..+      
T Consensus       231 GaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNI  310 (2102)
T PLN03200        231 GAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANI  310 (2102)
T ss_pred             CCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHH
Confidence            99999999987766642    46679999998654333 2  4788888877642110        0   0000      


Q ss_pred             -------------------------HhhcHH----------------------------------------HHHHHHHHh
Q psy12638        249 -------------------------ECLGTL----------------------------------------EVINFIGTA  263 (334)
Q Consensus       249 -------------------------e~Lg~l----------------------------------------eav~~lg~l  263 (334)
                                               ...|.+                                        .++.+++.+
T Consensus       311 cgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl  390 (2102)
T PLN03200        311 CGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASL  390 (2102)
T ss_pred             hCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHh
Confidence                                     000101                                        012233333


Q ss_pred             cCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        264 ASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       264 a~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      ..++..++.+.+.|+++.||+||.  ..++|...+.+.++..++.+++ .++.+....++| .|+++|++.
T Consensus       391 ~gN~~l~~~L~~~daik~LV~LL~--~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp-~LV~LL~s~  458 (2102)
T PLN03200        391 YGNAYLSRKLNHAEAKKVLVGLIT--MATADVQEELIRALSSLCCGKGGLWEALGGREGVQ-LLISLLGLS  458 (2102)
T ss_pred             cCChHHHHHHHhccchhhhhhhhc--cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHH-HHHHHHcCC
Confidence            344445566777788999999997  4456899999999999997755 677777776766 999999864

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.89  E-value=1.2e-21  Score=216.66  Aligned_cols=287  Identities=14%  Similarity=0.119  Sum_probs=229.0

Q ss_pred             ceeecccCcchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCCh
Q psy12638         37 NCYGLIVPKSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFL  114 (334)
Q Consensus        37 ~~~~~~~~~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~I  114 (334)
                      .++-...++.|++|+..|..|+.. .+++..+.+.|+||+|+++|.+++...++.|+..|.|++. ++++|..|++.|+|
T Consensus       411 ~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI  490 (2102)
T PLN03200        411 GLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI  490 (2102)
T ss_pred             hhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            344455567888999999999965 7799999999999999999999999999999999999996 56899999999999


Q ss_pred             HHHHHhccC--CchHHHHHHHHHHccCCh-hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchH-----
Q psy12638        115 PKLVSLLEE--GKHQKIILQLLYHLSIED-RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA-----  186 (334)
Q Consensus       115 p~Lv~lL~~--~~~~~~al~~L~~LS~~~-~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~-----  186 (334)
                      |+|+++|++  +..++.|+.+|+|||.++ ..|..+.+.|+||+|+++|.++ +.+.+++++..+.||+.+.++.     
T Consensus       491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~L  569 (2102)
T PLN03200        491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQL  569 (2102)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            999999964  567888999999999876 4566677899999999999875 5677777778888885432211     


Q ss_pred             --------------------------------HH-HHhcCchHHHHHHHhcCChHH---HHHHHHHHhcCCCch-hh--h
Q psy12638        187 --------------------------------EL-MLKNRQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVK-HY--F  227 (334)
Q Consensus       187 --------------------------------~~-i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~-~~--f  227 (334)
                                                      .. ....||++.|++++.++++..   +..++.|++...+.. +.  .
T Consensus       570 v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~  649 (2102)
T PLN03200        570 TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT  649 (2102)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence                                            01 113579999999998887654   455688888766543 22  4


Q ss_pred             hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC--CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638        228 VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS--DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ  305 (334)
Q Consensus       228 ~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~--~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~  305 (334)
                      .+.+++|+.++..++. +...      +++.+|+.+++  +.+.+..+++.|+||+|+++|+.  .|++++-+++.++..
T Consensus       650 agaIpPLV~LLss~~~-~v~k------eAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~--~d~~v~e~Al~ALan  720 (2102)
T PLN03200        650 DEIINPCIKLLTNNTE-AVAT------QSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS--SSIEVAEQAVCALAN  720 (2102)
T ss_pred             cCCHHHHHHHHhcCCh-HHHH------HHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC--CChHHHHHHHHHHHH
Confidence            6899999999876553 3222      46778888886  33344567899999999999974  567999999999999


Q ss_pred             HHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        306 ICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       306 l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ++.+++.+..+..+++++ .|+++|++++
T Consensus       721 Ll~~~e~~~ei~~~~~I~-~Lv~lLr~G~  748 (2102)
T PLN03200        721 LLSDPEVAAEALAEDIIL-PLTRVLREGT  748 (2102)
T ss_pred             HHcCchHHHHHHhcCcHH-HHHHHHHhCC
Confidence            999999998888766655 9999999875

>KOG4224|consensus

Probab=99.85  E-value=1.4e-20  Score=175.81  Aligned_cols=275  Identities=16%  Similarity=0.199  Sum_probs=231.1

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCch
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKH  126 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~  126 (334)
                      -|-..+-++++..+||.-+++.+.+++|+.=..+++.++++++++++.||+..+++|..|...|++.++.++-+  +...
T Consensus       104 aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirv  183 (550)
T KOG4224|consen  104 AAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRV  183 (550)
T ss_pred             hhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhH
Confidence            56677889999999999999999999999888889999999999999999999999999999999999999665  4456


Q ss_pred             HHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcC--chHHHHHHHhc
Q psy12638        127 QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNR--QLELLMIQAFT  204 (334)
Q Consensus       127 ~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~--gl~~Lv~~l~~  204 (334)
                      |.++..+|.++....++|..++..|++|.||.++.+ .+.+++.-+...+.|.+-+.+++...++.+  -++.||++.-+
T Consensus       184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~  262 (550)
T KOG4224|consen  184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD  262 (550)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC
Confidence            899999999999999999999999999999999986 566776656567789999999999999987  89999999888


Q ss_pred             CChHHH---HHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCch
Q psy12638        205 QKNILL---LKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTV  279 (334)
Q Consensus       205 ~~d~~~---~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I  279 (334)
                      +++...   -..+||+|.+..-...+  .+.++.+++++...-....       ++.|.++.+++-.|-+..++++.|+.
T Consensus       263 ~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~pli-------lasVaCIrnisihplNe~lI~dagfl  335 (550)
T KOG4224|consen  263 GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLI-------LASVACIRNISIHPLNEVLIADAGFL  335 (550)
T ss_pred             CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHH-------HHHHHHHhhcccccCcccceecccch
Confidence            877753   34699999887655443  4788888888733221111       24578889999999988999999999


Q ss_pred             HHHHHHhccccCCchHHHHHHHHHHHHHcC-chhhHHHhhcCCcHHHHHHhhhcC
Q psy12638        280 DLLINLLKEMQEDDEIVLQILYVFYQICRH-ASCQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       280 ~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~-~~~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      .|||++|+. .+.+|+.+.++.++..++.. ..++..|...+.|| .|++|+.|.
T Consensus       336 ~pLVrlL~~-~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~-kl~eL~lD~  388 (550)
T KOG4224|consen  336 RPLVRLLRA-GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIP-KLIELLLDG  388 (550)
T ss_pred             hHHHHHHhc-CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchH-HHHHHHhcC
Confidence            999999995 55667999999999999963 44676676655555 999999886

>KOG0166|consensus

Probab=99.69  E-value=1.1e-15  Score=150.69  Aligned_cols=279  Identities=15%  Similarity=0.151  Sum_probs=217.7

Q ss_pred             CcchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhc
Q psy12638         44 PKSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        44 ~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      |+.|-+|+.+|.+.+. ..++-....++|++|.+++++.+++.++++.|+-+|.|.+.| +..|...++.|++++|..++
T Consensus       124 ~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l  203 (514)
T KOG0166|consen  124 PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL  203 (514)
T ss_pred             hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh
Confidence            3447799999999996 466777789999999999999999999999999999999999 58999999999999999999


Q ss_pred             cCCc---hHHHHHHHHHHccCChhhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhcCchH
Q psy12638        122 EEGK---HQKIILQLLYHLSIEDRVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKNRQLE  196 (334)
Q Consensus       122 ~~~~---~~~~al~~L~~LS~~~~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~  196 (334)
                      ..+.   ....++.+|.|||....--..|.. ..++|.|..++.+ +++++..++.-.+..|+ ...+..+++.+.|+.+
T Consensus       204 ~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~  282 (514)
T KOG0166|consen  204 NKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVP  282 (514)
T ss_pred             ccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchH
Confidence            6443   566788889999987654445444 3478899999975 67777777665566666 5567788888999999


Q ss_pred             HHHHHHhcCChHH---HHHHHHHHhcCCCchhh---hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-Ccch
Q psy12638        197 LLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY---FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPIS  269 (334)
Q Consensus       197 ~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~---f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~  269 (334)
                      .|++++.+....+   +++++.|++..++....   -.+.++-|..++++...+....      ||+..+++++. +.+-
T Consensus       283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikk------EAcW~iSNItAG~~~q  356 (514)
T KOG0166|consen  283 RLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKK------EACWTISNITAGNQEQ  356 (514)
T ss_pred             HHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHH------HHHHHHHHhhcCCHHH
Confidence            9999998876654   47888898888766543   2477888877776444222221      47788899877 5666


Q ss_pred             HHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhh
Q psy12638        270 AEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLN  331 (334)
Q Consensus       270 ~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~  331 (334)
                      .+.+.+.|++|+|+++|.  +.|.++.-++++++..++.... .+-..+-+.+++++|.+||.
T Consensus       357 iqaVida~l~p~Li~~l~--~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~  417 (514)
T KOG0166|consen  357 IQAVIDANLIPVLINLLQ--TAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT  417 (514)
T ss_pred             HHHHHHcccHHHHHHHHh--ccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc
Confidence            778899999999999998  4557889999999999985544 22222334567779999984

>KOG1048|consensus

Probab=99.50  E-value=7.5e-13  Score=134.65  Aligned_cols=289  Identities=18%  Similarity=0.208  Sum_probs=197.5

Q ss_pred             cccCcchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh---hHHHHHHhcCChHH
Q psy12638         41 LIVPKSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT---NLREKIIKIGFLPK  116 (334)
Q Consensus        41 ~~~~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~---~~r~~iv~~g~Ip~  116 (334)
                      .-.+.-|..|..+++.++- +.+-|..+.+.|.|++|+.+|.+.+.+++..|..+|-||+|..   +++-+|.+.|+||.
T Consensus       244 ~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~  323 (717)
T KOG1048|consen  244 SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPT  323 (717)
T ss_pred             ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHH
Confidence            3344566799999999986 4557778889999999999999999999999999999999963   59999999999999


Q ss_pred             HHHhcc---CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCC-------------CchHHHHHHHHHHHc
Q psy12638        117 LVSLLE---EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQD-------------DETDNVLVALCINLA  180 (334)
Q Consensus       117 Lv~lL~---~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~-------------~~~~~~~~~ll~nLs  180 (334)
                      ++++|+   +.+.++....+|+|||..|..|..|.+ ++++.|.+-+.....             .++-..+...+-|++
T Consensus       324 l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlS  402 (717)
T KOG1048|consen  324 LVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLS  402 (717)
T ss_pred             HHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhcccc
Confidence            999995   678899999999999999888887765 466666665542111             122223445666885


Q ss_pred             c-CcchHHHHHhc-CchHHHHHHHhcC------ChHH---HHHHHHHHhcCCCch------hhh--------hh------
Q psy12638        181 L-NSRNAELMLKN-RQLELLMIQAFTQ------KNIL---LLKVIRNMSIHSNVK------HYF--------VD------  229 (334)
Q Consensus       181 ~-~~~n~~~i~~~-~gl~~Lv~~l~~~------~d~~---~~k~l~nLa~~~~~~------~~f--------~~------  229 (334)
                      . ..+-+++|.+. |.+..|+....+.      ++..   .+.++||++..-...      +..        .+      
T Consensus       403 s~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~  482 (717)
T KOG1048|consen  403 SAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESV  482 (717)
T ss_pred             chhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCccccc
Confidence            5 56678888865 6677887776531      2222   366788887653210      000        00      


Q ss_pred             --hHHHHHHHhhcC------------Cccc-----hhH-HhhcHH---------H-HHHHHHHhcC-Ccc-----hHHHh
Q psy12638        230 --YIGDIANCVQKE------------KDEN-----IKL-ECLGTL---------E-VINFIGTAAS-DPI-----SAEHF  273 (334)
Q Consensus       230 --~i~~L~~~l~~~------------~~~~-----~~v-e~Lg~l---------e-av~~lg~la~-~~~-----~~~~l  273 (334)
                        +..+.-+....+            ++-+     .++ ..+..+         | ++.+|-+++- ...     ++..+
T Consensus       483 gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~  562 (717)
T KOG1048|consen  483 GCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVF  562 (717)
T ss_pred             ccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhh
Confidence              001111100000            0000     001 011111         3 3556666644 222     34455


Q ss_pred             hhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       274 ~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      .++.+.|+|+++|+  .+|++++-.++.++..|+.+...++.|. ...++ .|++.|.+.+
T Consensus       563 ~kekgl~~l~~ll~--~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~-~lv~~Lp~~~  619 (717)
T KOG1048|consen  563 RKEKGLPPLVELLR--NDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIP-DLVRCLPGSG  619 (717)
T ss_pred             hhccCccHHHHHHh--cCCchHHHHHHHHHhhhccCchhhhhhh-cchHH-HHHHhCcCCC
Confidence            77878999999998  6788999999999999999999998776 44566 8999988753

>KOG0166|consensus

Probab=99.44  E-value=8.7e-12  Score=123.38  Aligned_cols=276  Identities=14%  Similarity=0.153  Sum_probs=199.6

Q ss_pred             HHHHHHHhc-ccchh-hHHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccCC
Q psy12638         49 EGRQDSRKL-SVYHV-NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEEG  124 (334)
Q Consensus        49 ~A~~~L~~L-Si~~e-nk~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~~  124 (334)
                      .|..++++| |.... .-+.....|+||.+|+.|.+ .++.++..|.-+|-|+|.-. +.-..+++.|++|.++.|+.+|
T Consensus        85 ~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~  164 (514)
T KOG0166|consen   85 TATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP  164 (514)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC
Confidence            556666554 44322 34445556999999999975 45899999999999999864 6777778999999999999654


Q ss_pred             --chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh-cCchHHHHH
Q psy12638        125 --KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK-NRQLELLMI  200 (334)
Q Consensus       125 --~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~-~~gl~~Lv~  200 (334)
                        ..++.|+..|.|++-| +..|......|++++|+.++.....-.....+.=++.||+........+.. ...+|.|..
T Consensus       165 ~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~  244 (514)
T KOG0166|consen  165 SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR  244 (514)
T ss_pred             cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence              5799999999999988 688999999999999999997533212333344567898776654333332 246777776


Q ss_pred             HHhcCChHHHHH---HHHHHhcCCCch-hhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHh
Q psy12638        201 QAFTQKNILLLK---VIRNMSIHSNVK-HYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHF  273 (334)
Q Consensus       201 ~l~~~~d~~~~k---~l~nLa~~~~~~-~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l  273 (334)
                      ++.+.+..++.-   .++.|+.+.... +..  .+.++.|+.++...+. .....      |..++|+++. ++.-.+.+
T Consensus       245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~P------aLRaiGNIvtG~d~QTq~v  317 (514)
T KOG0166|consen  245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP-KVVTP------ALRAIGNIVTGSDEQTQVV  317 (514)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc-ccccH------HHhhccceeeccHHHHHHH
Confidence            665544444433   466677665544 332  5888999998866552 33333      4577799887 44456688


Q ss_pred             hhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       274 ~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      ...|++|.|-.++... ..+-+.-+++.++..++.++. ..+.++.. ++...|+.+|++.
T Consensus       318 i~~~~L~~l~~ll~~s-~~~~ikkEAcW~iSNItAG~~~qiqaVida-~l~p~Li~~l~~~  376 (514)
T KOG0166|consen  318 INSGALPVLSNLLSSS-PKESIKKEACWTISNITAGNQEQIQAVIDA-NLIPVLINLLQTA  376 (514)
T ss_pred             HhcChHHHHHHHhccC-cchhHHHHHHHHHHHhhcCCHHHHHHHHHc-ccHHHHHHHHhcc
Confidence            9999999999999832 223488889999999998877 66667764 6666999999864

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.41  E-value=6.9e-12  Score=115.65  Aligned_cols=172  Identities=17%  Similarity=0.234  Sum_probs=145.8

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc-c-
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL-E-  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL-~-  122 (334)
                      .-++.|...+.+.+.++.|++-+.+.|+++.+..+++++++.++..|+.+|.|||.+.+++..|..  .|+.+.+.+ . 
T Consensus        28 ~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~  105 (254)
T PF04826_consen   28 FIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSS  105 (254)
T ss_pred             HHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcC
Confidence            456789999999999999999999999999999999999999999999999999999999998854  689888866 2 


Q ss_pred             --CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638        123 --EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI  200 (334)
Q Consensus       123 --~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~  200 (334)
                        +...|..++++|.|||..++.+..++.  ++|.++.+|.+| +...+..++.+++|||.++.+...+...+++..++.
T Consensus       106 ~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G-~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~  182 (254)
T PF04826_consen  106 PLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSG-SEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLS  182 (254)
T ss_pred             CCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcC-ChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHH
Confidence              335678899999999999999999965  899999999875 456666778999999999999999998899999997


Q ss_pred             HHhcCCh-HHH---HHHHHHHhcCC
Q psy12638        201 QAFTQKN-ILL---LKVIRNMSIHS  221 (334)
Q Consensus       201 ~l~~~~d-~~~---~k~l~nLa~~~  221 (334)
                      +..+..+ ..+   +.+..|+..+-
T Consensus       183 Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  183 LFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             HHccCCccHHHHHHHHHHHHHHHhh
Confidence            7655432 333   45566776653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.34  E-value=6.7e-11  Score=109.11  Aligned_cols=195  Identities=17%  Similarity=0.207  Sum_probs=149.2

Q ss_pred             HhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhh
Q psy12638         68 ANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVK  144 (334)
Q Consensus        68 ~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r  144 (334)
                      .+.+-+++|+.+|++ .++..++.++.++.|.+.++.++..|.+.|+||.+..+|.+|  ..+..|+..|.|+|.+.+++
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            556778899999985 678999999999999999999999999999999999999654  57888999999999999999


Q ss_pred             hHhhccCcHHHHHHHhccCC-CCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCc
Q psy12638        145 AMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNV  223 (334)
Q Consensus       145 ~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~  223 (334)
                      .+|..  .++.+.+...+.+ +..++...+.++.||+..+.....+..  +++.++.++.+|+...              
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~--------------  150 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKT--------------  150 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHH--------------
Confidence            99853  7888888766543 567776677889999888877777653  6777666655443322              


Q ss_pred             hhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHH
Q psy12638        224 KHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVF  303 (334)
Q Consensus       224 ~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l  303 (334)
                                             .+      .+..++..+|.+|+....+....+.+.++.|+.. .++.|+.+.++..|
T Consensus       151 -----------------------k~------~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~  200 (254)
T PF04826_consen  151 -----------------------KV------QVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFF  200 (254)
T ss_pred             -----------------------HH------HHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHH
Confidence                                   11      1334556666777765555555667888888873 55667788788888


Q ss_pred             HHHHcCc
Q psy12638        304 YQICRHA  310 (334)
Q Consensus       304 ~~l~~~~  310 (334)
                      ..+..|=
T Consensus       201 ~ni~~~~  207 (254)
T PF04826_consen  201 ENINENI  207 (254)
T ss_pred             HHHHHhh
Confidence            8886443

>KOG2122|consensus

Probab=99.34  E-value=5.3e-11  Score=126.48  Aligned_cols=284  Identities=18%  Similarity=0.216  Sum_probs=207.2

Q ss_pred             CcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhc-------------------------------------------
Q psy12638         44 PKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRIL-------------------------------------------   80 (334)
Q Consensus        44 ~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL-------------------------------------------   80 (334)
                      +..+++-.+-+.-+|..++.+..|...|-++.|++++                                           
T Consensus       208 t~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQ  287 (2195)
T KOG2122|consen  208 TDDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQ  287 (2195)
T ss_pred             cCCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHH
Confidence            3455554444455666678888888888888877744                                           


Q ss_pred             --------------------cCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-C---------C----ch
Q psy12638         81 --------------------MIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-E---------G----KH  126 (334)
Q Consensus        81 --------------------~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-~---------~----~~  126 (334)
                                          +..+....+.|+..|..+|||.|.|..|-+.|++..+-+||. +         +    .+
T Consensus       288 IraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aL  367 (2195)
T KOG2122|consen  288 IRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNAL  367 (2195)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence                                112335567899999999999999999999999999999883 1         1    14


Q ss_pred             HHHHHHHHHHccCC-hhhhhHh-hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc-h-HHHHHhcCchHHHHHHH
Q psy12638        127 QKIILQLLYHLSIE-DRVKAMF-AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR-N-AELMLKNRQLELLMIQA  202 (334)
Q Consensus       127 ~~~al~~L~~LS~~-~~~r~~i-~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~-n-~~~i~~~~gl~~Lv~~l  202 (334)
                      +.++.-.|-||.+- .-||..+ ++-||+..+|..|.+. .+++.+..+.++-||+.... | +..+.+.|-+..|+...
T Consensus       368 RrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~a  446 (2195)
T KOG2122|consen  368 RRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACA  446 (2195)
T ss_pred             HHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHH
Confidence            88999999999985 4677777 5568999999999864 45776767789999987643 4 55555778899999988


Q ss_pred             hcCChH----HHHHHHHHHhcCCCchhh-h---hhhHHHHHHHhhcCCccch--hHHhh-cHHHHHHHH-HHhcCCcchH
Q psy12638        203 FTQKNI----LLLKVIRNMSIHSNVKHY-F---VDYIGDIANCVQKEKDENI--KLECL-GTLEVINFI-GTAASDPISA  270 (334)
Q Consensus       203 ~~~~d~----~~~k~l~nLa~~~~~~~~-f---~~~i~~L~~~l~~~~~~~~--~ve~L-g~leav~~l-g~la~~~~~~  270 (334)
                      ..+.-.    -++-.+||||-|....+. |   ++++.-|+.+|+.......  +||-- |+|   .-+ .-+|...+++
T Consensus       447 l~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGIL---RNVSS~IAt~E~yR  523 (2195)
T KOG2122|consen  447 LRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGIL---RNVSSLIATCEDYR  523 (2195)
T ss_pred             HHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHH---HHHHhHhhccchHH
Confidence            765432    246679999999876555 5   6899999998875532222  23322 222   222 2245578899


Q ss_pred             HHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH-cCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        271 EHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC-RHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       271 ~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~-~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      +++.+++.+..|.+.|++++  --+|--.+.+++.|. +++..++.+.....++ .|..|+|+||
T Consensus       524 QILR~~NCLq~LLQ~LKS~S--LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~-mLrnLIhSKh  585 (2195)
T KOG2122|consen  524 QILRRHNCLQTLLQHLKSHS--LTIVSNACGTLWNLSARSPEDQQMLWDDGAVP-MLRNLIHSKH  585 (2195)
T ss_pred             HHHHHhhHHHHHHHHhhhcc--eEEeecchhhhhhhhcCCHHHHHHHHhcccHH-HHHHHHhhhh
Confidence            99999999999999998654  236666688888887 4555777666655555 9999999986

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.32  E-value=5.2e-11  Score=111.34  Aligned_cols=269  Identities=14%  Similarity=0.142  Sum_probs=193.1

Q ss_pred             HHHHHHHhcccchhhHHHh-HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccCC--
Q psy12638         49 EGRQDSRKLSVYHVNKEQM-ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEEG--  124 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m-~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~~--  124 (334)
                      +|+.+|.+.+....+..+. +++|++|.+++||.+++.++++.++=+|.|.+-|. ..|.-+...|++.++..++.+.  
T Consensus       134 EAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~  213 (526)
T COG5064         134 EAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI  213 (526)
T ss_pred             HHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc
Confidence            8999999999877766664 68999999999999999999999999999999995 7888888999999999999532  


Q ss_pred             --chHHHHHHHHHHccCCh---hhhhHhhccCcHHHHHHHhccCCCCchHHHH-HHHHHHHccCc-chHHHHHhcCchHH
Q psy12638        125 --KHQKIILQLLYHLSIED---RVKAMFAYTNCMSLLMNMLLVEQDDETDNVL-VALCINLALNS-RNAELMLKNRQLEL  197 (334)
Q Consensus       125 --~~~~~al~~L~~LS~~~---~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~-~~ll~nLs~~~-~n~~~i~~~~gl~~  197 (334)
                        .....+..+|.||+.-.   ..-..|.  .++|.|.+|+.+- ++++-.++ .++-| |+-.+ +..+.+.+.|.-+.
T Consensus       214 ~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLiys~-D~evlvDA~WAiSY-lsDg~~E~i~avld~g~~~R  289 (526)
T COG5064         214 HISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLIYSR-DPEVLVDACWAISY-LSDGPNEKIQAVLDVGIPGR  289 (526)
T ss_pred             hHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHHhhc-CHHHHHHHHHHHHH-hccCcHHHHHHHHhcCCcHH
Confidence              23556888899998642   2233342  3899999999864 44443333 23333 43333 55777888888889


Q ss_pred             HHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchH
Q psy12638        198 LMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISA  270 (334)
Q Consensus       198 Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~  270 (334)
                      |++++.+.+..+   +++.+.|+-..++.... +  .|++..+..++++.+ +..--      |++..++++.. +.+-.
T Consensus       290 LvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irK------EaCWTiSNITAGnteqi  362 (526)
T COG5064         290 LVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRK------EACWTISNITAGNTEQI  362 (526)
T ss_pred             HHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhh------hhheeecccccCCHHHH
Confidence            999877633322   47777787766554433 2  466666666665544 22222      35566677744 66667


Q ss_pred             HHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHH----HhhcCCcHHHHHHhhh
Q psy12638        271 EHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY----LIKETDAPAYMIDLLN  331 (334)
Q Consensus       271 ~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~----i~~~~~i~~~Li~LL~  331 (334)
                      +.+.+.++||+|+.+|.  ..|-.+.-+++.++.....+...+..    ++ +.|.+++|.++|.
T Consensus       363 qavid~nliPpLi~lls--~ae~k~kKEACWAisNatsgg~~~PD~iryLv-~qG~IkpLc~~L~  424 (526)
T COG5064         363 QAVIDANLIPPLIHLLS--SAEYKIKKEACWAISNATSGGLNRPDIIRYLV-SQGFIKPLCDLLD  424 (526)
T ss_pred             HHHHhcccchHHHHHHH--HHHHHHHHHHHHHHHhhhccccCCchHHHHHH-HccchhHHHHHHh
Confidence            78899999999999997  45556777889999988866554443    34 4577778888874

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.18  E-value=2.8e-10  Score=91.28  Aligned_cols=114  Identities=24%  Similarity=0.237  Sum_probs=99.4

Q ss_pred             HhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCCh-
Q psy12638         66 QMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIED-  141 (334)
Q Consensus        66 ~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~-  141 (334)
                      .+.+.|+++.+++++.+++..++..|+.+|.|++.+ ++.+..+++.|++|.+++++++  +..+..|+.+|++|+.+. 
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467899999999999999999999999999999998 7999999999999999999964  567899999999999886 


Q ss_pred             hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc
Q psy12638        142 RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA  180 (334)
Q Consensus       142 ~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs  180 (334)
                      +.+..+.+.|.++.|++++.. .+..+.+.+..++.||+
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence            567777888999999999975 45566666667777764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.16  E-value=5.6e-09  Score=105.66  Aligned_cols=281  Identities=15%  Similarity=0.195  Sum_probs=205.8

Q ss_pred             cchhHHHHHHHhcccchhh-HHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC
Q psy12638         45 KSKREGRQDSRKLSVYHVN-KEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE  123 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~en-k~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~  123 (334)
                      .-|+.|+..+.++....+. ...+.+.++++.++..+.+++..+.+.|..+|.+|+.++..-..+...+.++.|..++..
T Consensus        92 ~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~  171 (503)
T PF10508_consen   92 KVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ  171 (503)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc
Confidence            4455677778887765554 344566899999999999999999999999999999998888889999999999999954


Q ss_pred             --CchHHHHHHHHHHcc-CChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638        124 --GKHQKIILQLLYHLS-IEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI  200 (334)
Q Consensus       124 --~~~~~~al~~L~~LS-~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~  200 (334)
                        +..|..+..++.+++ ..++.......+|.++.+++.+.+ ++.-++..++.++..|+..+.+.+.+.+.|.++.|.+
T Consensus       172 ~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~  250 (503)
T PF10508_consen  172 SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSN  250 (503)
T ss_pred             cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHH
Confidence              557888888999996 457888888889999999999975 5555666788899999999999999999999999999


Q ss_pred             HHhcC-ChH-----H---HHHHHHHHhcCCCch--hhhhhhHHHHHHHhhcCCc--cchhHHhhcHH-------------
Q psy12638        201 QAFTQ-KNI-----L---LLKVIRNMSIHSNVK--HYFVDYIGDIANCVQKEKD--ENIKLECLGTL-------------  254 (334)
Q Consensus       201 ~l~~~-~d~-----~---~~k~l~nLa~~~~~~--~~f~~~i~~L~~~l~~~~~--~~~~ve~Lg~l-------------  254 (334)
                      .+.+. .||     .   .++...+++...+..  ..|..++..+.+++...+.  ....++.+|.+             
T Consensus       251 ~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~  330 (503)
T PF10508_consen  251 LLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQK  330 (503)
T ss_pred             HHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence            98754 344     1   377888999874332  2256666666666544432  12334555544             


Q ss_pred             -------------------------HHHHHHHHh--cCCc-c-------hHHHhhhCCc--hH-HHHHHhccccCCchHH
Q psy12638        255 -------------------------EVINFIGTA--ASDP-I-------SAEHFCKNST--VD-LLINLLKEMQEDDEIV  296 (334)
Q Consensus       255 -------------------------eav~~lg~l--a~~~-~-------~~~~l~~~g~--I~-~Lv~LL~~~~~dde~v  296 (334)
                                               .+.-+++.+  ...+ +       ...++...|-  .. .+.++++  |.-.|+-
T Consensus       331 ~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~--qPF~elr  408 (503)
T PF10508_consen  331 QGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLK--QPFPELR  408 (503)
T ss_pred             cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchHHH
Confidence                                     234445555  2211 1       1112222221  12 4555554  4346899


Q ss_pred             HHHHHHHHHHHcCchhhHHHhhcCCcHHHHHH
Q psy12638        297 LQILYVFYQICRHASCQNYLIKETDAPAYMID  328 (334)
Q Consensus       297 lqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~  328 (334)
                      +.+..++..++.|+-+.+.+....|++.||++
T Consensus       409 ~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld  440 (503)
T PF10508_consen  409 CAAYRLLQALAAQPWGQREICSSPGFIEYLLD  440 (503)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence            99999999999999988888888888877764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122|consensus

Probab=99.11  E-value=1.2e-09  Score=116.52  Aligned_cols=255  Identities=16%  Similarity=0.194  Sum_probs=188.4

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCC------------ChhHHHHHHHHHHhhcCC-hhHHHHHH-hcCCh
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIE------------DSNLQSSTLKLLFNLSFD-TNLREKII-KIGFL  114 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~------------~~~l~~~al~~L~NLS~d-~~~r~~iv-~~g~I  114 (334)
                      .|+..|.|+|.+.|+|..|-+.|++..+..|+.-+            +..++..|.++|-||.|- ..||..+- ..|++
T Consensus       317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM  396 (2195)
T KOG2122|consen  317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM  396 (2195)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence            68889999999999999999999999999988432            236899999999999995 46777666 58999


Q ss_pred             HHHHHhcc-CC-chHHHHHHHHHHccC--ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH-ccCcchHHHH
Q psy12638        115 PKLVSLLE-EG-KHQKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL-ALNSRNAELM  189 (334)
Q Consensus       115 p~Lv~lL~-~~-~~~~~al~~L~~LS~--~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i  189 (334)
                      ..+|..|. .| ++.++.+.+|-|||=  |-..|..+.++|-+-.|+.--.....+.--+.++..|+|| +++.+|+..|
T Consensus       397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i  476 (2195)
T KOG2122|consen  397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI  476 (2195)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence            99999884 44 788899999999996  4567899999999999887765444433336677889999 6788999999


Q ss_pred             Hhc-CchHHHHHHHh-cCChHHH------HHHHHHHhcCC----Cchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHH
Q psy12638        190 LKN-RQLELLMIQAF-TQKNILL------LKVIRNMSIHS----NVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLE  255 (334)
Q Consensus       190 ~~~-~gl~~Lv~~l~-~~~d~~~------~k~l~nLa~~~----~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~le  255 (334)
                      |.- |++.-||..+. +++...+      -.++||+|.+=    +.+|..  --++..|+..|+.+.- -++-+..    
T Consensus       477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SL-TiVSNaC----  551 (2195)
T KOG2122|consen  477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSL-TIVSNAC----  551 (2195)
T ss_pred             hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcce-EEeecch----
Confidence            974 78888888874 4333322      22688877763    334432  2567777777765441 1111222    


Q ss_pred             HHHHHHHh-cCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh
Q psy12638        256 VINFIGTA-ASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC  312 (334)
Q Consensus       256 av~~lg~l-a~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~  312 (334)
                        ..|-++ |+++.-++.+-+.|.|+.|-+|+.++.-  .+..--+.++..++.+.+.
T Consensus       552 --GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhk--MIa~GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  552 --GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHK--MIAMGSAAALRNLLNFRPA  605 (2195)
T ss_pred             --hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhh--hhhhhHHHHHHHHhcCCch
Confidence              222444 4477778899999999999999998764  2333347788888877743

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.09  E-value=1.4e-09  Score=101.84  Aligned_cols=269  Identities=15%  Similarity=0.173  Sum_probs=189.2

Q ss_pred             HHHHhcccchh-hHHHhHhCCcchHHHhhc-cCCChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhccCC--ch
Q psy12638         52 QDSRKLSVYHV-NKEQMANLNLIEKLPRIL-MIEDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLEEG--KH  126 (334)
Q Consensus        52 ~~L~~LSi~~e-nk~~m~~~g~I~~Lv~LL-~~~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~~~--~~  126 (334)
                      .|=+-||.... --....++|++|.+++++ ..++.-++-.|.=+|-|.|.-.....++| +.|++|.++.+|.++  +.
T Consensus        94 kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V  173 (526)
T COG5064          94 KFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDV  173 (526)
T ss_pred             HHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHH
Confidence            44455665433 445678999999999999 55555678889999999999876666555 899999999999644  57


Q ss_pred             HHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCC--CchHHHHHHHHHHHcc--CcchHHHHHhcCchHHHHHH
Q psy12638        127 QKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQD--DETDNVLVALCINLAL--NSRNAELMLKNRQLELLMIQ  201 (334)
Q Consensus       127 ~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~--~~~~~~~~~ll~nLs~--~~~n~~~i~~~~gl~~Lv~~  201 (334)
                      ++.++..|.|++-| +..|..+-++|+++++..++.++..  +-+. .+.=.+.||..  +|.--..-+. ..+|.|.++
T Consensus       174 ~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR-n~TWtLSNlcRGknP~P~w~~is-qalpiL~KL  251 (526)
T COG5064         174 REQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR-NATWTLSNLCRGKNPPPDWSNIS-QALPILAKL  251 (526)
T ss_pred             HHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH-HhHHHHHHhhCCCCCCCchHHHH-HHHHHHHHH
Confidence            88999999999987 5789999999999999999985332  1121 12234567743  3332222222 368888887


Q ss_pred             HhcCChHHHHHHHHHHhcCCCchhh----h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhh
Q psy12638        202 AFTQKNILLLKVIRNMSIHSNVKHY----F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFC  274 (334)
Q Consensus       202 l~~~~d~~~~k~l~nLa~~~~~~~~----f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~  274 (334)
                      +.+-+..++...++.+|.-.+..+.    .  .+.-+.|+.++++.+ ......      +...+|++.. ++.--+.+.
T Consensus       252 iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s-a~iqtP------alR~vGNIVTG~D~QTqviI  324 (526)
T COG5064         252 IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES-AKIQTP------ALRSVGNIVTGSDDQTQVII  324 (526)
T ss_pred             HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc-ccccCH------HHHhhcCeeecCccceehhe
Confidence            7766666677777777765544332    1  466777888876543 122222      4566788866 333345788


Q ss_pred             hCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhc
Q psy12638        275 KNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLND  332 (334)
Q Consensus       275 ~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d  332 (334)
                      ..|+.+.+-.+|.++.+  .+--+++.++..+...+. ..+.++...=|| +||+||..
T Consensus       325 ~~G~L~a~~~lLs~~ke--~irKEaCWTiSNITAGnteqiqavid~nliP-pLi~lls~  380 (526)
T COG5064         325 NCGALKAFRSLLSSPKE--NIRKEACWTISNITAGNTEQIQAVIDANLIP-PLIHLLSS  380 (526)
T ss_pred             ecccHHHHHHHhcChhh--hhhhhhheeecccccCCHHHHHHHHhcccch-HHHHHHHH
Confidence            99999999999987665  788888999888875554 555667655555 99999864

>KOG1048|consensus

Probab=99.09  E-value=1e-09  Score=111.99  Aligned_cols=167  Identities=23%  Similarity=0.338  Sum_probs=138.1

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC---hhhhh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE---DRVKA  145 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~---~~~r~  145 (334)
                      -+|.-+.+|.+.++.++-+|...+--++| |.+.|.++.+.|+||+||.+|.  .++.+..|+..|-||+..   +++|.
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            45667889999999999999999999999 5799999999999999999996  457788899999999774   46899


Q ss_pred             HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCCh-------H------H---
Q psy12638        146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKN-------I------L---  209 (334)
Q Consensus       146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d-------~------~---  209 (334)
                      .|.+.++||.++++|....+.++.+.+..++.||+.++..+..|++. ++..|-+.++....       +      .   
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence            99999999999999997778888888889999999998888888875 88888887764211       1      1   


Q ss_pred             -HHHHHHHHhcCC-Cchhhh---hhhHHHHHHHhh
Q psy12638        210 -LLKVIRNMSIHS-NVKHYF---VDYIGDIANCVQ  239 (334)
Q Consensus       210 -~~k~l~nLa~~~-~~~~~f---~~~i~~L~~~l~  239 (334)
                       +..|+||++... ..++.+   .|.|+.|+..+.
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq  427 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ  427 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence             255899999854 445554   577888887664

>KOG4199|consensus

Probab=99.05  E-value=3.2e-08  Score=92.78  Aligned_cols=263  Identities=13%  Similarity=0.188  Sum_probs=192.9

Q ss_pred             HhcccchhhHHHhHhCCcchHHHhhcc--CCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhc-cCCc---hH
Q psy12638         55 RKLSVYHVNKEQMANLNLIEKLPRILM--IEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL-EEGK---HQ  127 (334)
Q Consensus        55 ~~LSi~~enk~~m~~~g~I~~Lv~LL~--~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL-~~~~---~~  127 (334)
                      .-++...+-...+.+..+...++++|.  .+++++...+++.+-.=+. +.-||..+++.++.|.+..-| +.+.   .|
T Consensus       129 ~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VR  208 (461)
T KOG4199|consen  129 EAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVR  208 (461)
T ss_pred             HHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHH
Confidence            333334445556667777777888774  4567888888888888776 468999999999999999666 3322   35


Q ss_pred             HHHHHHHHHccCChhhhhHhh----------ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHH
Q psy12638        128 KIILQLLYHLSIEDRVKAMFA----------YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLEL  197 (334)
Q Consensus       128 ~~al~~L~~LS~~~~~r~~i~----------~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~  197 (334)
                      +... .+.-|-.||+.|..|+          +.|+...|++.+.-+-+++.-.++...+--|+-..+-++.|.+.||+..
T Consensus       209 el~~-a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~t  287 (461)
T KOG4199|consen  209 ELYD-AIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDT  287 (461)
T ss_pred             HHHH-HHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            5444 3666777887886554          4566778999998777777655555556677888899999999999999


Q ss_pred             HHHHHhcCChHH-------HHHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-Cc
Q psy12638        198 LMIQAFTQKNIL-------LLKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DP  267 (334)
Q Consensus       198 Lv~~l~~~~d~~-------~~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~  267 (334)
                      |++.+-.+++..       .++++|.+|.+++.+..+  .++.++++.++..+...+.+++.     +..+++.++. .|
T Consensus       288 l~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~-----~~a~i~~l~LR~p  362 (461)
T KOG4199|consen  288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE-----VMAIISILCLRSP  362 (461)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH-----HHHHHHHHHhcCc
Confidence            999988755542       367899999999988875  47888888888777766666654     5566677776 78


Q ss_pred             chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcH
Q psy12638        268 ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAP  323 (334)
Q Consensus       268 ~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~  323 (334)
                      +....+.+.|+-...++-++.+----.+.-+.+.++..|..+......++-..|+-
T Consensus       363 dhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE  418 (461)
T KOG4199|consen  363 DHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIE  418 (461)
T ss_pred             chHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHH
Confidence            88889999999899999998654444567777999999887766333343334554

>KOG4500|consensus

Probab=99.04  E-value=1.2e-08  Score=98.11  Aligned_cols=282  Identities=12%  Similarity=0.108  Sum_probs=179.2

Q ss_pred             hHHHHHHHhcccchhhHHHh----HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhcc
Q psy12638         48 REGRQDSRKLSVYHVNKEQM----ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        48 ~~A~~~L~~LSi~~enk~~m----~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      .++++++.+-|+.+--|...    ..+|++++|.+...|++.++...+.|+|.|.+.|+ ++|..+-+.|+=..+++.|+
T Consensus        60 ~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~  139 (604)
T KOG4500|consen   60 LFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLK  139 (604)
T ss_pred             hhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhc
Confidence            36677777777665555554    34688999999999999999999999999999985 99999999999666666663


Q ss_pred             ------CC---chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCC-CCchHHHHHHHHHHH-ccCcchHHHHH
Q psy12638        123 ------EG---KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALCINL-ALNSRNAELML  190 (334)
Q Consensus       123 ------~~---~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nL-s~~~~n~~~i~  190 (334)
                            +|   ++...+.++|.|-+.+ ++.|....+.|.++.|+.++.-+- +...++...+-..|| ++-.++...+.
T Consensus       140 ~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~  219 (604)
T KOG4500|consen  140 PYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFC  219 (604)
T ss_pred             cccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhh
Confidence                  22   3456678888888876 688999999999999998886322 222323333333344 33333322222


Q ss_pred             h-cCchHHHHHHHh----cCChHHHHHHHHHHhcCCCchhhh----------------------------hhhHHHHHHH
Q psy12638        191 K-NRQLELLMIQAF----TQKNILLLKVIRNMSIHSNVKHYF----------------------------VDYIGDIANC  237 (334)
Q Consensus       191 ~-~~gl~~Lv~~l~----~~~d~~~~k~l~nLa~~~~~~~~f----------------------------~~~i~~L~~~  237 (334)
                      . ..-.-.+++++-    .+-++..+.++.-.+.++.-+-.|                            .+.+.+++.+
T Consensus       220 ~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vl  299 (604)
T KOG4500|consen  220 KDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVL  299 (604)
T ss_pred             ccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhh
Confidence            1 111112222221    122334444444444443222111                            2333344444


Q ss_pred             hhcCCc--------cchhHHhhcHH---------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcc-ccCCchHHHHH
Q psy12638        238 VQKEKD--------ENIKLECLGTL---------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKE-MQEDDEIVLQI  299 (334)
Q Consensus       238 l~~~~~--------~~~~ve~Lg~l---------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~-~~~dde~vlqi  299 (334)
                      +..++.        ..++....+++         .++.++|++|+.++....+++.|.+..|++.|.. +-+|+++-.|.
T Consensus       300 lltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qh  379 (604)
T KOG4500|consen  300 LLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQH  379 (604)
T ss_pred             hhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH
Confidence            444331        11222222322         5788999999988888899999999999999864 66777777776


Q ss_pred             --HHHHHHHHcCchhhHHHhhcCCcHHHHHHhh
Q psy12638        300 --LYVFYQICRHASCQNYLIKETDAPAYMIDLL  330 (334)
Q Consensus       300 --~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL  330 (334)
                        +.++..+.--.+++.++++ .|++..++-.+
T Consensus       380 A~lsALRnl~IPv~nka~~~~-aGvteaIL~~l  411 (604)
T KOG4500|consen  380 ACLSALRNLMIPVSNKAHFAP-AGVTEAILLQL  411 (604)
T ss_pred             HHHHHHHhccccCCchhhccc-cchHHHHHHHH
Confidence              7788888766667766655 45555544333

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.96  E-value=9.8e-08  Score=96.64  Aligned_cols=243  Identities=17%  Similarity=0.191  Sum_probs=177.8

Q ss_pred             hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhH-HHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCChhhhh
Q psy12638         69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL-REKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRVKA  145 (334)
Q Consensus        69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~-r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~r~  145 (334)
                      ..++.+.|.+.|.++++.++..+++.|.+++.+++. ...+.+.+++|.++.++++++  ....|+.+|.+|+..+....
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~  154 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE  154 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence            667888999999999999999999999999988755 455567999999999997664  57889999999999888888


Q ss_pred             HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhcCchHHHHHHHhcCChHHH----HHHHHHHhcC
Q psy12638        146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKNRQLELLMIQAFTQKNILL----LKVIRNMSIH  220 (334)
Q Consensus       146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~----~k~l~nLa~~  220 (334)
                      .+...+.++.|.+++.+ +++.++..+..++++++ .+++..+.+...|.++.+++.+.+ +|.++    +.++..+|..
T Consensus       155 ~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~  232 (503)
T PF10508_consen  155 QLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAET  232 (503)
T ss_pred             HHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcC
Confidence            88888889999999975 35566667778888885 556667777777888888887655 66543    6679999996


Q ss_pred             CCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhcc--ccCCchH
Q psy12638        221 SNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKE--MQEDDEI  295 (334)
Q Consensus       221 ~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~--~~~dde~  295 (334)
                      +.+.+.+  .+.+++|..++...+.+...-. +-....+...|.++. +|.  ..+.   ..|.+++.+..  .+.|...
T Consensus       233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~-~~l~g~~~f~g~la~~~~~--~v~~---~~p~~~~~l~~~~~s~d~~~  306 (503)
T PF10508_consen  233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS-LLLPGRMKFFGNLARVSPQ--EVLE---LYPAFLERLFSMLESQDPTI  306 (503)
T ss_pred             hhHHHHHHhCCHHHHHHHHHhccccCCcccc-hhhhhHHHHHHHHHhcChH--HHHH---HHHHHHHHHHHHhCCCChhH
Confidence            6665542  4788888888866553330111 111134577788888 443  2222   34666655542  2455556


Q ss_pred             HHHHHHHHHHHHcCchhhHHH-hhc
Q psy12638        296 VLQILYVFYQICRHASCQNYL-IKE  319 (334)
Q Consensus       296 vlqi~~~l~~l~~~~~~~~~i-~~~  319 (334)
                      ..-++-++|.++...+.++.+ ...
T Consensus       307 ~~~A~dtlg~igst~~G~~~L~~~~  331 (503)
T PF10508_consen  307 REVAFDTLGQIGSTVEGKQLLLQKQ  331 (503)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhhc
Confidence            665677999999888888777 443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4199|consensus

Probab=98.91  E-value=1.3e-07  Score=88.73  Aligned_cols=271  Identities=13%  Similarity=0.215  Sum_probs=185.0

Q ss_pred             HHHHHHHhcccchhhHHHh------HhCCcchHHHh---hccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH
Q psy12638         49 EGRQDSRKLSVYHVNKEQM------ANLNLIEKLPR---ILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS  119 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m------~~~g~I~~Lv~---LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~  119 (334)
                      +.+..|++|+.  +.|...      .+.|.-+.++-   +-.+++..+...++.+|-.|.   ...+.+.+..+...+++
T Consensus        78 E~s~ll~~l~d--~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt---~~qpdl~da~g~~vvv~  152 (461)
T KOG4199|consen   78 ETTELLEQLAD--ECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT---HKQPDLFDAEAMAVVLK  152 (461)
T ss_pred             HHHHHHHHHHH--HHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---cCCcchhccccHHHHHH
Confidence            66778888873  444433      44677776554   445667777777766666555   45556677888899999


Q ss_pred             hcc----CCchHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc----------
Q psy12638        120 LLE----EGKHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR----------  184 (334)
Q Consensus       120 lL~----~~~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~----------  184 (334)
                      +|.    +.+.....+..+-+-+. ++-+|.-|.+++..|.+..-|......++..++-..+.-|.+|+.          
T Consensus       153 lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~  232 (461)
T KOG4199|consen  153 LLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHG  232 (461)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhH
Confidence            994    33444555555555554 689999999999999988666533333344444444444555543          


Q ss_pred             hHHHHHhcCchHHHHHHHhcCChHH----HHHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCcc---chhHHhhcHHH
Q psy12638        185 NAELMLKNRQLELLMIQAFTQKNIL----LLKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDE---NIKLECLGTLE  255 (334)
Q Consensus       185 n~~~i~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~---~~~ve~Lg~le  255 (334)
                      .+..|+++||+..|++.+.-+.||-    +.-.+..+|..+.--+.+  .|++..|++.+..+..+   ...-+|++.  
T Consensus       233 hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lsl--  310 (461)
T KOG4199|consen  233 HARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSL--  310 (461)
T ss_pred             HHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHH--
Confidence            3778888899999999998887773    234577777766554443  47888899988765432   233445444  


Q ss_pred             HHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH-cCchhhHHHhhcCCcHHHHHHhhh
Q psy12638        256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC-RHASCQNYLIKETDAPAYMIDLLN  331 (334)
Q Consensus       256 av~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~-~~~~~~~~i~~~~~i~~~Li~LL~  331 (334)
                          +..+|-+++....+++.|+.|.++.++-.+++|+-++-|++.++..+| +-++....+++ .|+....++-|+
T Consensus       311 ----LralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmk  382 (461)
T KOG4199|consen  311 ----LRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMK  382 (461)
T ss_pred             ----HHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHH
Confidence                488888888899999999999999999888887777777777777777 44443334554 566656677665

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.76  E-value=3.6e-08  Score=78.91  Aligned_cols=95  Identities=25%  Similarity=0.267  Sum_probs=86.1

Q ss_pred             CcchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhc
Q psy12638         44 PKSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        44 ~~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      ++.|+.|+..|.+++.. ++++..+.+.|++|.+++++.++++.++..|+.+|.||+.++ +.+..+++.|++|.|++++
T Consensus        21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l  100 (120)
T cd00020          21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL  100 (120)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHH
Confidence            46677899999999987 889999999999999999999999999999999999999986 7788889999999999999


Q ss_pred             cCC--chHHHHHHHHHHcc
Q psy12638        122 EEG--KHQKIILQLLYHLS  138 (334)
Q Consensus       122 ~~~--~~~~~al~~L~~LS  138 (334)
                      +++  ..++.++.+|.+|+
T Consensus       101 ~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020         101 DSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             hcCCHHHHHHHHHHHHHhh
Confidence            654  56888999999886

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.76  E-value=3e-07  Score=90.53  Aligned_cols=266  Identities=15%  Similarity=0.134  Sum_probs=169.6

Q ss_pred             HHHHHHHhcccchhhHHH-hHhCCcchHHHhhccCC-ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC-C-
Q psy12638         49 EGRQDSRKLSVYHVNKEQ-MANLNLIEKLPRILMIE-DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE-G-  124 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~-m~~~g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~-~-  124 (334)
                      .|.++|.++......+.. -...-..+.|...+.++ +.+.+..|+.+|.+|-..++.|..+.+.++++.|+++|+. . 
T Consensus       120 ~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~  199 (429)
T cd00256         120 MSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATL  199 (429)
T ss_pred             HHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccc
Confidence            456666666543221111 00001333555666654 4788999999999999999999999999999999999953 2 


Q ss_pred             --chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-------chHHHHHhcCch
Q psy12638        125 --KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-------RNAELMLKNRQL  195 (334)
Q Consensus       125 --~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-------~n~~~i~~~~gl  195 (334)
                        ..+..++-.++-||.+++.-..+.+.+.||.|++++...+-+.+-.-+++++.||...+       .....|++. |+
T Consensus       200 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l  278 (429)
T cd00256         200 GFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KV  278 (429)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-Ch
Confidence              45667888899999999888888888999999999987665555555667788996532       234556654 67


Q ss_pred             HHHHHHHhcC--ChHHHHHHHHHHhcCCCc----hhhhhhhHHHHHHHhhc----CCccchhHHhhcHHHHHHHHHHhcC
Q psy12638        196 ELLMIQAFTQ--KNILLLKVIRNMSIHSNV----KHYFVDYIGDIANCVQK----EKDENIKLECLGTLEVINFIGTAAS  265 (334)
Q Consensus       196 ~~Lv~~l~~~--~d~~~~k~l~nLa~~~~~----~~~f~~~i~~L~~~l~~----~~~~~~~ve~Lg~leav~~lg~la~  265 (334)
                      +++++.+...  .|+.+..-+..+...=..    ...|.+|...+-.=-.+    +..+.|=-|-.         ..+ .
T Consensus       279 ~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~---------~kf-~  348 (429)
T cd00256         279 LKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA---------DRL-N  348 (429)
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH---------HHH-H
Confidence            7777776643  466554443333322111    11155555544321111    11223322221         111 1


Q ss_pred             CcchHHHhhhCCchHHHHHHhccccCCchHHHHH-HHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        266 DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQI-LYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       266 ~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi-~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      +.++       .++..|+++|.. +. |..+++| ++=+|.+++|-|....++.+-++-..+++||.++|
T Consensus       349 ~~~~-------~llk~L~~iL~~-s~-d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d  409 (429)
T cd00256         349 EKNY-------ELLKILIHLLET-SV-DPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED  409 (429)
T ss_pred             hcch-------HHHHHHHHHHhc-CC-CcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC
Confidence            2222       267899999953 33 4444444 88899999887755577777888878889998875

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.57  E-value=3.6e-07  Score=86.98  Aligned_cols=155  Identities=21%  Similarity=0.156  Sum_probs=117.8

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccC----CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc---
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI----EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL---  121 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~----~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL---  121 (334)
                      .|+++|..+......+..-...++++.++.++.+    ++.+++..|+.+|.+|...++.|..+.+.|+++.+.+++   
T Consensus       124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~  203 (312)
T PF03224_consen  124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQ  203 (312)
T ss_dssp             HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhh
Confidence            6778888887776655555446778888888765    555788999999999999999999999999999999999   


Q ss_pred             ---cCC---chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc--hHHHHHhcC
Q psy12638        122 ---EEG---KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR--NAELMLKNR  193 (334)
Q Consensus       122 ---~~~---~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~--n~~~i~~~~  193 (334)
                         ++.   ..+..++-.++.||++++....+...+.||.|++++....-+.+-.-+++.+.||.....  +...|+.. 
T Consensus       204 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~-  282 (312)
T PF03224_consen  204 ATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC-  282 (312)
T ss_dssp             -------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-
T ss_pred             cccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc-
Confidence               222   346778889999999999999999999999999999976666665556678889977766  88889886 


Q ss_pred             chHHHHHHHhc
Q psy12638        194 QLELLMIQAFT  204 (334)
Q Consensus       194 gl~~Lv~~l~~  204 (334)
                      ++.+.++.+.+
T Consensus       283 ~~l~~l~~L~~  293 (312)
T PF03224_consen  283 GLLKTLQNLSE  293 (312)
T ss_dssp             -HHHHHHHHHS
T ss_pred             cHHHHHHHHhc
Confidence            44555555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.46  E-value=1.9e-06  Score=81.98  Aligned_cols=187  Identities=19%  Similarity=0.150  Sum_probs=126.1

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC------CchHHHHHHHHHHccCChhhhh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE------GKHQKIILQLLYHLSIEDRVKA  145 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~------~~~~~~al~~L~~LS~~~~~r~  145 (334)
                      ...++++++.++|..++..|..+|.+|......+..-...+.++.+...+++      .+.+..|+..|.+|...++.|.
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~  185 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ  185 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence            6788999999999999999999999998876555555447788999988853      2346889999999999999999


Q ss_pred             HhhccCcHHHHHHHh------ccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhc
Q psy12638        146 MFAYTNCMSLLMNML------LVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSI  219 (334)
Q Consensus       146 ~i~~t~~i~~Lv~LL------~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~  219 (334)
                      .|.+.++++.|++++      .+..+.++.-+++-.+..||++++.++.+.+.+-++.|++.+....             
T Consensus       186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-------------  252 (312)
T PF03224_consen  186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-------------  252 (312)
T ss_dssp             HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---------------
T ss_pred             HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-------------
Confidence            999999999999999      3434445555665666789999999999998776666665544321             


Q ss_pred             CCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcc--hHHHhhhCCchHHHHHHhccccCCchHHH
Q psy12638        220 HSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPI--SAEHFCKNSTVDLLINLLKEMQEDDEIVL  297 (334)
Q Consensus       220 ~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~--~~~~l~~~g~I~~Lv~LL~~~~~dde~vl  297 (334)
                                             .++. +-.     ++..+-++...+.  +...++..|++|.+..|...+-.|+|+.-
T Consensus       253 -----------------------KEKv-vRv-----~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  253 -----------------------KEKV-VRV-----SLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             -----------------------SHHH-HHH-----HHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred             -----------------------cchH-HHH-----HHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence                                   1111 111     2223344444322  67778888876666666666678888875


Q ss_pred             HHH
Q psy12638        298 QIL  300 (334)
Q Consensus       298 qi~  300 (334)
                      -+-
T Consensus       304 dl~  306 (312)
T PF03224_consen  304 DLE  306 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946|consensus

Probab=98.43  E-value=2e-05  Score=80.97  Aligned_cols=273  Identities=15%  Similarity=0.156  Sum_probs=190.4

Q ss_pred             ccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccC--CChhHHHHHHHHHHhhcCChh-------HH-------
Q psy12638         42 IVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI--EDSNLQSSTLKLLFNLSFDTN-------LR-------  105 (334)
Q Consensus        42 ~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~--~~~~l~~~al~~L~NLS~d~~-------~r-------  105 (334)
                      -.++.||+|++.|+-+|-  .+|...+..| +++|++-|..  .|++....++..++|+-.+++       .+       
T Consensus        35 TL~eDRR~A~rgLKa~sr--kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~  111 (970)
T KOG0946|consen   35 TLLEDRRDAVRGLKAFSR--KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGL  111 (970)
T ss_pred             cchhhHHHHHHHHHHHHH--HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHH
Confidence            345889999999998864  4777666655 7899999966  478999999999999987653       11       


Q ss_pred             ---HHH-HhcCChHHHHHhccCC--chHHHHHHHHHHc-cC-ChhhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHHH
Q psy12638        106 ---EKI-IKIGFLPKLVSLLEEG--KHQKIILQLLYHL-SI-EDRVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVALC  176 (334)
Q Consensus       106 ---~~i-v~~g~Ip~Lv~lL~~~--~~~~~al~~L~~L-S~-~~~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll  176 (334)
                         +.+ ...+.|..|+..+...  ..|.+++.++-.| |. -.+.+..+-. .-||..||++|.. ..+.++.+++-++
T Consensus       112 ~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL  190 (970)
T KOG0946|consen  112 WIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLL  190 (970)
T ss_pred             HHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHH
Confidence               233 3578888888888644  4588899988887 33 2466666654 4599999999974 6677778887777


Q ss_pred             HHHccCcchHHH-HHhcCchHHHHHHHhc-C-ChH-----HHHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccc
Q psy12638        177 INLALNSRNAEL-MLKNRQLELLMIQAFT-Q-KNI-----LLLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDEN  245 (334)
Q Consensus       177 ~nLs~~~~n~~~-i~~~~gl~~Lv~~l~~-~-~d~-----~~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~  245 (334)
                      .-|+.+..+.+. ++-++.|..|++.+-+ | .|.     -.+.++-||=.++...|. |  .++|++|.++++.-...+
T Consensus       191 ~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d  270 (970)
T KOG0946|consen  191 SELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGD  270 (970)
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccC
Confidence            778777666555 5567899999998764 3 233     136678888888877777 5  579999998876532111


Q ss_pred             hhHHhhcHH-----------HHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc
Q psy12638        246 IKLECLGTL-----------EVINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA  310 (334)
Q Consensus       246 ~~ve~Lg~l-----------eav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~  310 (334)
                      -  |..||-           .+|..+-.-.+    -.+|.+.+.+.+++..|..++-..--.-|+....+.++..+.+.+
T Consensus       271 ~--Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn  348 (970)
T KOG0946|consen  271 G--EVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN  348 (970)
T ss_pred             c--ccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence            0  122211           23333322222    233667888999999999998754356678888888888888777


Q ss_pred             hhhHHHhhcC
Q psy12638        311 SCQNYLIKET  320 (334)
Q Consensus       311 ~~~~~i~~~~  320 (334)
                      ...+.-+...
T Consensus       349 ~~nQ~~F~~v  358 (970)
T KOG0946|consen  349 ARNQDEFADV  358 (970)
T ss_pred             hHHHHHHhhc
Confidence            7555444433

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.29  E-value=9.2e-05  Score=73.11  Aligned_cols=240  Identities=13%  Similarity=0.140  Sum_probs=155.3

Q ss_pred             CcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCC--ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc
Q psy12638         44 PKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIE--DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        44 ~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      +..+.-|+..|..|-..++.|....+.+.+++|+.+|+..  +.+++..++-+++-|||+++....+.+.|.||.|+.++
T Consensus       158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~  237 (429)
T cd00256         158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDIL  237 (429)
T ss_pred             cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHH
Confidence            3445577889988888899999999999999999999763  45899999999999999999888999999999999999


Q ss_pred             cC---CchHHHHHHHHHHccCCh-------hhhhHhhccCcHHHHHHHhccCCCC--chHHHHHHHHHHHccCcchHHHH
Q psy12638        122 EE---GKHQKIILQLLYHLSIED-------RVKAMFAYTNCMSLLMNMLLVEQDD--ETDNVLVALCINLALNSRNAELM  189 (334)
Q Consensus       122 ~~---~~~~~~al~~L~~LS~~~-------~~r~~i~~t~~i~~Lv~LL~~~~~~--~~~~~~~~ll~nLs~~~~n~~~i  189 (334)
                      +.   +..-..++++|.||....       .....+... +++++++.|......  ++..+.-.+--.|      .+.+
T Consensus       238 k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~~~l~~L~~rk~~DedL~edl~~L~e~L------~~~~  310 (429)
T cd00256         238 KESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVLKTLQSLEQRKYDDEDLTDDLKFLTEEL------KNSV  310 (429)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChHHHHHHHhcCCCCcHHHHHHHHHHHHHH------HHHH
Confidence            63   356788999999997642       122233322 566677777654433  3322221111111      1111


Q ss_pred             HhcCchHHHHHHHhcCChHHHHHHHHHHhcCCC-c---------hhhh----hhhHHHHHHHhhcCCccchhHHhhcHHH
Q psy12638        190 LKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-V---------KHYF----VDYIGDIANCVQKEKDENIKLECLGTLE  255 (334)
Q Consensus       190 ~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~-~---------~~~f----~~~i~~L~~~l~~~~~~~~~ve~Lg~le  255 (334)
                      .+---+..-..-+.+|.          | .|.+ .         ...|    .+.+..|++++.++++...+  ++    
T Consensus       311 k~ltsfD~Y~~El~sg~----------L-~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~l--aV----  373 (429)
T cd00256         311 QDLSSFDEYKSELRSGR----------L-HWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIIL--AV----  373 (429)
T ss_pred             HHcCCHHHHHHHHhcCC----------c-cCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCccee--eh----
Confidence            11111222222222221          1 1111 1         1112    24567777877544322221  10    


Q ss_pred             HHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638        256 VINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       256 av~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~  309 (334)
                      |+-=+|-+++ .|..+..+.+.|+=..+.+++.  .+|+++.-+++.|+..|.-|
T Consensus       374 Ac~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~--h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         374 ACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN--HEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             hhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Confidence            2333677777 6888888889998778888887  67899999999999887543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG4646|consensus

Probab=98.16  E-value=5.9e-06  Score=68.47  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=96.3

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG  124 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~  124 (334)
                      +.|++...=|.+.+-++-|..-+.+.++++..+.-+..+|+.+++.++..||||+-|+.+.+.|++++++|.++..+.+|
T Consensus        32 eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp  111 (173)
T KOG4646|consen   32 EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSP  111 (173)
T ss_pred             HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCC
Confidence            45667777788888889999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             c--hHHHHHHHHHHccCCh-hhhhHhhccCcHHHHHHHhc
Q psy12638        125 K--HQKIILQLLYHLSIED-RVKAMFAYTNCMSLLMNMLL  161 (334)
Q Consensus       125 ~--~~~~al~~L~~LS~~~-~~r~~i~~t~~i~~Lv~LL~  161 (334)
                      .  .-..++.+|++|+.-+ ..|..+..    |+.++.+.
T Consensus       112 ~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~  147 (173)
T KOG4646|consen  112 PEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ  147 (173)
T ss_pred             hHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence            3  4677999999999875 55777743    44444443

>KOG2973|consensus

Probab=98.12  E-value=0.00036  Score=65.23  Aligned_cols=249  Identities=17%  Similarity=0.172  Sum_probs=145.2

Q ss_pred             hHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhhccCc
Q psy12638         74 EKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNC  152 (334)
Q Consensus        74 ~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~  152 (334)
                      ..+++++.+.++.++..|+.-|.+|+.- ..+.-.. +.-.|+.+.++++++...+-|+..|.|+|.+++.|..+-.. -
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~~~~a~~alVnlsq~~~l~~~ll~~-~   83 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDPAEPAATALVNLSQKEELRKKLLQD-L   83 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCcccccHHHHHHHHHHhhHHHHHHHHHH-H
Confidence            3578999999999999999999999976 2222111 34567789999976665667889999999999998888766 6


Q ss_pred             HHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh--c----CchHHHHHHHhc-C-C--hH--HHHHHHHHHhcC
Q psy12638        153 MSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK--N----RQLELLMIQAFT-Q-K--NI--LLLKVIRNMSIH  220 (334)
Q Consensus       153 i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~--~----~gl~~Lv~~l~~-~-~--d~--~~~k~l~nLa~~  220 (334)
                      +..+++++.+ +..........++.|||.++.-...+..  .    .|+..++..... + +  .+  .+.-+..|+++.
T Consensus        84 ~k~l~~~~~~-p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~  162 (353)
T KOG2973|consen   84 LKVLMDMLTD-PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF  162 (353)
T ss_pred             HHHHHHHhcC-cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhh
Confidence            6678888864 5556666666788999988776444332  1    355555444332 1 1  11  234456677776


Q ss_pred             CCchhhhh--h--hHHHHHHHhhcCCccchhHHhhcHH---------------HH----HHHHHHhcCCcchH-HHhhhC
Q psy12638        221 SNVKHYFV--D--YIGDIANCVQKEKDENIKLECLGTL---------------EV----INFIGTAASDPISA-EHFCKN  276 (334)
Q Consensus       221 ~~~~~~f~--~--~i~~L~~~l~~~~~~~~~ve~Lg~l---------------ea----v~~lg~la~~~~~~-~~l~~~  276 (334)
                      ...++.|.  +  ...++..+ ++.+++----...|++               +.    ...+--+|.-.+.. +-+.  
T Consensus       163 ~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~--  239 (353)
T KOG2973|consen  163 EAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA--  239 (353)
T ss_pred             hhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh--
Confidence            66655431  1  11112211 1111000000011111               00    11122222211110 1111  


Q ss_pred             CchHHHHHHhcc---ccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhh
Q psy12638        277 STVDLLINLLKE---MQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN  331 (334)
Q Consensus       277 g~I~~Lv~LL~~---~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~  331 (334)
                      ++-+-| +.|..   .-.|+++-.+.+-+++.+|.-...|+.+-.. ++. .+++.+|
T Consensus       240 ~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~k-gvY-pilRElh  294 (353)
T KOG2973|consen  240 KLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSK-GVY-PILRELH  294 (353)
T ss_pred             cCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhc-Cch-HHHHHHh
Confidence            222233 55542   2357789999999999999999999877664 555 4555554

>KOG0168|consensus

Probab=98.09  E-value=0.00021  Score=74.26  Aligned_cols=240  Identities=12%  Similarity=0.130  Sum_probs=167.4

Q ss_pred             Chh-HHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhcc---CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHH
Q psy12638         84 DSN-LQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLE---EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLM  157 (334)
Q Consensus        84 ~~~-l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~---~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv  157 (334)
                      ++. .++....+-.+|+.-+ +.-.-+--.-++|.||.+|+   +.++...|++.|++|+.- ++.....++.++||.|.
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~  260 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL  260 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence            443 3444445556777643 33333334568999999996   457788899999999875 78888889999999998


Q ss_pred             HHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHH---hcCChHHHHHHHHHHhcCCCchhh--hhhhHH
Q psy12638        158 NMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQA---FTQKNILLLKVIRNMSIHSNVKHY--FVDYIG  232 (334)
Q Consensus       158 ~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l---~~~~d~~~~k~l~nLa~~~~~~~~--f~~~i~  232 (334)
                      +-|.+-..-++.+..+..+--+|..  .-.++.+.||+-..+..+   ..+-.-.++.+..|++..=.+..-  |.+.++
T Consensus       261 ~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealP  338 (1051)
T KOG0168|consen  261 EKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALP  338 (1051)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence            8888777777777777666666543  455677888888766654   222233456677777766443322  578899


Q ss_pred             HHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccC--CchHHHHHHHHHHHH
Q psy12638        233 DIANCVQKEKDENIKLECLGTLEVINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQE--DDEIVLQILYVFYQI  306 (334)
Q Consensus       233 ~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~--dde~vlqi~~~l~~l  306 (334)
                      .|..+++.++  +..+|.     +++++..++.    .++--+.++..|+|....+|+.....  ...+..-++.+|..|
T Consensus       339 lL~~lLs~~D--~k~ies-----~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~m  411 (1051)
T KOG0168|consen  339 LLTPLLSYQD--KKPIES-----VCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLM  411 (1051)
T ss_pred             HHHHHHhhcc--chhHHH-----HHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHH
Confidence            8988888776  333444     4566666655    55555578999999999999975422  345667789999999


Q ss_pred             HcCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638        307 CRHASCQNYLIKETDAPAYMIDLLND  332 (334)
Q Consensus       307 ~~~~~~~~~i~~~~~i~~~Li~LL~d  332 (334)
                      +...+.....+.+.+|.+.|-++|..
T Consensus       412 sS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  412 SSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             ccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            98877444455567999888888753

>KOG4500|consensus

Probab=98.04  E-value=0.00045  Score=67.25  Aligned_cols=241  Identities=15%  Similarity=0.188  Sum_probs=155.7

Q ss_pred             HHHHHHHhccc-chhhHHHhHhCCcchHHHhhccC---CC----hhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHH
Q psy12638         49 EGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMI---ED----SNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVS  119 (334)
Q Consensus        49 ~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~---~~----~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~  119 (334)
                      +--++|.+.+- ..|||..+.+.|.-..+++.|+.   .+    ++....+...|.|-+-+. +.|.+..+.|++|.|+.
T Consensus       106 Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~  185 (604)
T KOG4500|consen  106 QCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAI  185 (604)
T ss_pred             HHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHH
Confidence            66788888774 67899999999997777766643   33    378889999999999985 89999999999999999


Q ss_pred             hcc----CCchHHHHHHHHHHcc-CCh-hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcC
Q psy12638        120 LLE----EGKHQKIILQLLYHLS-IED-RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNR  193 (334)
Q Consensus       120 lL~----~~~~~~~al~~L~~LS-~~~-~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~  193 (334)
                      ++.    +..+.+..+.-.+||. ..- -....+..+.-...+++++.....++.......++.-.+.++..+-.+++.|
T Consensus       186 ~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~g  265 (604)
T KOG4500|consen  186 TYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNG  265 (604)
T ss_pred             HhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcc
Confidence            995    3344555555555553 332 2356666667777788888766666766655566655665655555555554


Q ss_pred             chHHHHHHHhc--------------------------CC-----------------------hH--HHH--HHHHHHhcC
Q psy12638        194 QLELLMIQAFT--------------------------QK-----------------------NI--LLL--KVIRNMSIH  220 (334)
Q Consensus       194 gl~~Lv~~l~~--------------------------~~-----------------------d~--~~~--k~l~nLa~~  220 (334)
                      =+.-+++++.+                          |+                       |.  ..+  -.+.|.|+.
T Consensus       266 l~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~  345 (604)
T KOG4500|consen  266 LLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR  345 (604)
T ss_pred             hHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc
Confidence            33333333332                          11                       11  111  135566666


Q ss_pred             CCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccC
Q psy12638        221 SNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE  291 (334)
Q Consensus       221 ~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~  291 (334)
                      +.....|  .+++.+|+..+...++.+.-++.--  ++.-++.+++---.++..+...|+.+.+.-.++..+.
T Consensus       346 D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qh--A~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~p  416 (604)
T KOG4500|consen  346 DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQH--ACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASP  416 (604)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHH--HHHHHHHhccccCCchhhccccchHHHHHHHHHhcCC
Confidence            6665554  3677777777655433332222100  1234556666644456789999999999988886554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.99  E-value=8.5e-06  Score=53.61  Aligned_cols=39  Identities=26%  Similarity=0.231  Sum_probs=37.8

Q ss_pred             hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhc
Q psy12638         61 HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLS   99 (334)
Q Consensus        61 ~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS   99 (334)
                      ++|+..+.+.|+||+|+++|.+++.++++.|+.+|.|||
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2160|consensus

Probab=97.87  E-value=0.00023  Score=67.81  Aligned_cols=163  Identities=14%  Similarity=0.152  Sum_probs=122.0

Q ss_pred             cccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHH
Q psy12638         41 LIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVS  119 (334)
Q Consensus        41 ~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~  119 (334)
                      ..-+..|..|+--|+-|...-+|-..+...|...+++..+.+++..++..|+.++...+.+ |.+...+.+.|+.++|..
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            3444778899999999988888999999999999999999999999999999999999997 799999999999999999


Q ss_pred             hccC--Cc-hHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCC-chHHHHHHHHHHHcc-CcchHHHHHhcC
Q psy12638        120 LLEE--GK-HQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDD-ETDNVLVALCINLAL-NSRNAELMLKNR  193 (334)
Q Consensus       120 lL~~--~~-~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~-~~~~~~~~ll~nLs~-~~~n~~~i~~~~  193 (334)
                      .+..  +. .+..|+..++.|=. .......|-..+|...|.+.+.++..+ ..+.-++.++.+|.. +..... ++..-
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-IASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-HHHHh
Confidence            9953  32 34555555555544 467888999999999999999874333 332233344445543 333344 55445


Q ss_pred             chHHHHHHHhc
Q psy12638        194 QLELLMIQAFT  204 (334)
Q Consensus       194 gl~~Lv~~l~~  204 (334)
                      +++..+.-..+
T Consensus       253 ~f~~~~~~l~~  263 (342)
T KOG2160|consen  253 GFQRVLENLIS  263 (342)
T ss_pred             hhhHHHHHHhh
Confidence            66655544443

>KOG0168|consensus

Probab=97.79  E-value=0.00036  Score=72.60  Aligned_cols=233  Identities=17%  Similarity=0.135  Sum_probs=145.9

Q ss_pred             hHHHHHH-Hhcccc-hhhHHHhHhCCcchHHHhhccCC-ChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc-
Q psy12638         48 REGRQDS-RKLSVY-HVNKEQMANLNLIEKLPRILMIE-DSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE-  122 (334)
Q Consensus        48 ~~A~~~L-~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~-  122 (334)
                      -+|++-| +.|++- .+.=..+.-.-+||.|++||+.+ +.+++..|.++|.+|..- |+.....|+.++||.|++=|. 
T Consensus       186 leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~  265 (1051)
T KOG0168|consen  186 LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT  265 (1051)
T ss_pred             HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh
Confidence            3555555 344443 22222233345788999999886 569999999999999976 899999999999999996663 


Q ss_pred             --CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc--cCcchHHHHHhcCchHHH
Q psy12638        123 --EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA--LNSRNAELMLKNRQLELL  198 (334)
Q Consensus       123 --~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs--~~~~n~~~i~~~~gl~~L  198 (334)
                        --+.-+.++.+|-.+|..+.  ..|-++|++...+.+|.-. .-..+..+++++.|+.  ..++.-.-+++  .+|.|
T Consensus       266 IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL  340 (1051)
T KOG0168|consen  266 IEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLL  340 (1051)
T ss_pred             hhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHH
Confidence              34567789999999999873  4566889888887777532 2244455678888984  33444445554  45544


Q ss_pred             HHHHhcCChHH-HHH---HHHHHhcC---CCch-hh-h-hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-c
Q psy12638        199 MIQAFTQKNIL-LLK---VIRNMSIH---SNVK-HY-F-VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-P  267 (334)
Q Consensus       199 v~~l~~~~d~~-~~k---~l~nLa~~---~~~~-~~-f-~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~  267 (334)
                       ..+++.+|.. +-.   ++..++..   .+.+ ++ + .+.|.....+++...  ..+-.-+-+ ..|..+..++++ |
T Consensus       341 -~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~--t~Ls~~~~~-~vIrmls~msS~~p  416 (1051)
T KOG0168|consen  341 -TPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTP--TILSNGTYT-GVIRMLSLMSSGSP  416 (1051)
T ss_pred             -HHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCc--ccccccchh-HHHHHHHHHccCCh
Confidence             4445544432 211   22223222   1111 11 2 245555555544332  000000000 256677888886 8


Q ss_pred             chHHHhhhCCchHHHHHHhccc
Q psy12638        268 ISAEHFCKNSTVDLLINLLKEM  289 (334)
Q Consensus       268 ~~~~~l~~~g~I~~Lv~LL~~~  289 (334)
                      ..+..+.+.++...|..+|...
T Consensus       417 l~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  417 LLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             HHHHHHHHhhHHHHHHHHHhcc
Confidence            8888888999999999999753

>KOG2759|consensus

Probab=97.78  E-value=0.0021  Score=62.40  Aligned_cols=248  Identities=16%  Similarity=0.140  Sum_probs=156.1

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccC--CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC---
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI--EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE---  123 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~--~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~---  123 (334)
                      .|+++|+-+-..++.|.....++.+..+++.+.+  .+-++|...+-+++-|+|++...+.+.+.+.||.|++++++   
T Consensus       176 ~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~K  255 (442)
T KOG2759|consen  176 FAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTK  255 (442)
T ss_pred             HHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999833  35589999999999999999999999999999999999963   


Q ss_pred             CchHHHHHHHHHHccCChh---hhhHhhc---cCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHH
Q psy12638        124 GKHQKIILQLLYHLSIEDR---VKAMFAY---TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLEL  197 (334)
Q Consensus       124 ~~~~~~al~~L~~LS~~~~---~r~~i~~---t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~  197 (334)
                      +.....+++++.|+.....   .+..++.   .+.+++-++.|.+...++  .+...-+-+|..  +-.+.+.+---+..
T Consensus       256 EKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysD--EDL~~di~~L~e--~L~~svq~LsSFDe  331 (442)
T KOG2759|consen  256 EKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSD--EDLVDDIEFLTE--KLKNSVQDLSSFDE  331 (442)
T ss_pred             HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCc--HHHHHHHHHHHH--HHHHHHHhhccHHH
Confidence            3466778999999966543   3333333   356777778887655444  222222222211  00111111111111


Q ss_pred             HHHHHhcCChHHHHHHHHHHhcCCCchhhh----hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHH
Q psy12638        198 LMIQAFTQKNILLLKVIRNMSIHSNVKHYF----VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEH  272 (334)
Q Consensus       198 Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f----~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~  272 (334)
                      -..-+.+|.-.+- -+-+.=-.|..|..+|    -+.+..|++++..+.+.-.  =|+    |+-=+|...+ .|.++..
T Consensus       332 Y~sEl~sG~L~WS-P~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i--L~V----Ac~DIge~Vr~yP~gk~v  404 (442)
T KOG2759|consen  332 YKSELRSGRLEWS-PVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII--LCV----ACHDIGEYVRHYPEGKAV  404 (442)
T ss_pred             HHHHHHhCCcCCC-ccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce--eeh----hhhhHHHHHHhCchHhHH
Confidence            1122222210000 0000000011122222    2455666666654442111  111    2333566666 7999999


Q ss_pred             hhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638        273 FCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       273 l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~  309 (334)
                      +.+.|+=..+.+|+.  .+|+++.-.++.|+..+..|
T Consensus       405 v~k~ggKe~vM~Lln--h~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  405 VEKYGGKERVMNLLN--HEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHhchHHHHHHHhc--CCCchHHHHHHHHHHHHHhh
Confidence            999999999999997  78999999999999888654

>KOG1293|consensus

Probab=97.76  E-value=0.00016  Score=73.28  Aligned_cols=118  Identities=22%  Similarity=0.291  Sum_probs=95.7

Q ss_pred             hHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhh
Q psy12638         67 MANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRV  143 (334)
Q Consensus        67 m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~  143 (334)
                      .....+++||++++..++.-++..++.+|+||.-+ ...|..+.+.|+|..+.+++.++  ..+..++.+|+|++...+.
T Consensus       415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de  494 (678)
T KOG1293|consen  415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE  494 (678)
T ss_pred             CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence            55567899999999999999999999999999987 68999999999999999999654  5689999999999987655


Q ss_pred             hhHhhcc-C-cHHHHHHHhccCCCCchHHHHHHHHHHHccCcch
Q psy12638        144 KAMFAYT-N-CMSLLMNMLLVEQDDETDNVLVALCINLALNSRN  185 (334)
Q Consensus       144 r~~i~~t-~-~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n  185 (334)
                      ...+.-- . .-..++.+. +.++..++..+..++-||..+.+.
T Consensus       495 ~~k~~~~~ki~a~~i~~l~-nd~d~~Vqeq~fqllRNl~c~~~~  537 (678)
T KOG1293|consen  495 EEKFQLLAKIPANLILDLI-NDPDWAVQEQCFQLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHHHHHhhHHHHHHHH-hCCCHHHHHHHHHHHHHhhcCcHH
Confidence            4444332 2 223355554 578889988899999999877554

>KOG4646|consensus

Probab=97.68  E-value=5.3e-05  Score=62.91  Aligned_cols=115  Identities=15%  Similarity=0.150  Sum_probs=90.2

Q ss_pred             hCCcchHHHh-hccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhh
Q psy12638         69 NLNLIEKLPR-ILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKA  145 (334)
Q Consensus        69 ~~g~I~~Lv~-LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~  145 (334)
                      ..|.+..||. +=...+.+.++..+.=|.|.+.||.|+..+.+.+++...|..|..+  .+.+-+++-|+|||.|..+..
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence            3445556664 3345677889989999999999999999999999999999999644  467889999999999999999


Q ss_pred             HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc
Q psy12638        146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR  184 (334)
Q Consensus       146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~  184 (334)
                      .|.+.+++|.++.-+.+ +.+.....++..++.|+...+
T Consensus        94 ~I~ea~g~plii~~lss-p~e~tv~sa~~~l~~l~~~~R  131 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSS-PPEITVHSAALFLQLLEFGER  131 (173)
T ss_pred             HHHHhcCCceEEeecCC-ChHHHHHHHHHHHHHhcCccc
Confidence            99999999999998875 444433434455556654443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.67  E-value=0.00066  Score=68.59  Aligned_cols=80  Identities=20%  Similarity=0.239  Sum_probs=57.6

Q ss_pred             hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CC
Q psy12638         48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EG  124 (334)
Q Consensus        48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~  124 (334)
                      ..|++++.++.. ++    |. .-+++.+.+++.++++-+++.|+.++..+.. +++.   +... .+|.+.++|.  ++
T Consensus        97 ~lAL~~l~~i~~-~~----~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~  166 (526)
T PF01602_consen   97 GLALRTLSNIRT-PE----MA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDP  166 (526)
T ss_dssp             HHHHHHHHHH-S-HH----HH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSH
T ss_pred             HHHHhhhhhhcc-cc----hh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcc
Confidence            367777777652 11    21 2267888999999999999999999999875 3332   2222 6899999995  44


Q ss_pred             chHHHHHHHHHHc
Q psy12638        125 KHQKIILQLLYHL  137 (334)
Q Consensus       125 ~~~~~al~~L~~L  137 (334)
                      ..+..|+.+++.+
T Consensus       167 ~V~~~a~~~l~~i  179 (526)
T PF01602_consen  167 SVVSAALSLLSEI  179 (526)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            5678899999999

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.66  E-value=7.5e-05  Score=48.38  Aligned_cols=40  Identities=23%  Similarity=0.200  Sum_probs=37.5

Q ss_pred             hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC
Q psy12638         61 HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF  100 (334)
Q Consensus        61 ~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~  100 (334)
                      ++|+..+.+.|++++|++++.+++.++++.|+.+|.||++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4589999999999999999999999999999999999985

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1293|consensus

Probab=97.59  E-value=0.0014  Score=66.67  Aligned_cols=160  Identities=19%  Similarity=0.228  Sum_probs=123.9

Q ss_pred             hHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccC
Q psy12638         63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSI  139 (334)
Q Consensus        63 nk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~  139 (334)
                      +|.++.+.-+...+..+.+..+.+....|+-++.++|-. ...|...-...++.+||+++.+|+  .+..+++++.|+-+
T Consensus       369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm  448 (678)
T KOG1293|consen  369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM  448 (678)
T ss_pred             HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence            444455555555566667778888888888888888865 467777888999999999998776  57889999999988


Q ss_pred             C-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHH-hcCchHHHHHHHhcCChHH----HHHH
Q psy12638        140 E-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELML-KNRQLELLMIQAFTQKNIL----LLKV  213 (334)
Q Consensus       140 ~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~-~~~gl~~Lv~~l~~~~d~~----~~k~  213 (334)
                      + ...|..|-++|+|..+.+++.+ ++....+...-++.|+.++.++..... .......++..+.+..|+-    .+++
T Consensus       449 efs~~kskfl~~ngId~l~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql  527 (678)
T KOG1293|consen  449 EFSNLKSKFLRNNGIDILESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL  527 (678)
T ss_pred             hcccHHHHHHHcCcHHHHHHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence            6 5789999999999999999975 566666777789999998887755444 3345556777777777653    4889


Q ss_pred             HHHHhcCCCc
Q psy12638        214 IRNMSIHSNV  223 (334)
Q Consensus       214 l~nLa~~~~~  223 (334)
                      +||+..+...
T Consensus       528 lRNl~c~~~~  537 (678)
T KOG1293|consen  528 LRNLTCNSRK  537 (678)
T ss_pred             HHHhhcCcHH
Confidence            9999987543

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.56  E-value=0.003  Score=63.16  Aligned_cols=111  Identities=19%  Similarity=0.196  Sum_probs=86.2

Q ss_pred             HHHHHhcccchhhHHHhHhCCcchHHHhhc----------cCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHH
Q psy12638         51 RQDSRKLSVYHVNKEQMANLNLIEKLPRIL----------MIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVS  119 (334)
Q Consensus        51 ~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL----------~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~  119 (334)
                      +..|+-||-++.+-+.+.....+..|.++-          ...+.++...|+++|+|.-+. +..|...++.|+.+.+++
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            455666777777777777777777777665          445778999999999999997 699999999999999999


Q ss_pred             hccC-------CchHHHHHHHHHHccC-ChhhhhHhhcc-CcHHHHHHHhc
Q psy12638        120 LLEE-------GKHQKIILQLLYHLSI-EDRVKAMFAYT-NCMSLLMNMLL  161 (334)
Q Consensus       120 lL~~-------~~~~~~al~~L~~LS~-~~~~r~~i~~t-~~i~~Lv~LL~  161 (334)
                      .|+.       ++......++|+-++- ..+.|..+.+. +++..++..|.
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~  132 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALE  132 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHH
Confidence            9942       4567889999998875 45667666554 67777776663

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2973|consensus

Probab=97.56  E-value=0.0029  Score=59.34  Aligned_cols=236  Identities=14%  Similarity=0.135  Sum_probs=142.5

Q ss_pred             hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhc-----CChHHHHHhc
Q psy12638         48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKI-----GFLPKLVSLL  121 (334)
Q Consensus        48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~-----g~Ip~Lv~lL  121 (334)
                      +.|+++|-|+|-..+-+..|.+. .+..++.++-.+...+-+....+|.|||.++ .....+...     .+++.++...
T Consensus        60 ~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~  138 (353)
T KOG2973|consen   60 EPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAF  138 (353)
T ss_pred             cHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHH
Confidence            48999999999998888888888 7778888888887888888889999999986 444444432     3666666555


Q ss_pred             cCC-----chHHHHHHHHHHccCChhhhhHhhccCcHHH--HHHHhccCCCCchHH-HHHHHHHHHccCcchHHHHHhcC
Q psy12638        122 EEG-----KHQKIILQLLYHLSIEDRVKAMFAYTNCMSL--LMNMLLVEQDDETDN-VLVALCINLALNSRNAELMLKNR  193 (334)
Q Consensus       122 ~~~-----~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~--Lv~LL~~~~~~~~~~-~~~~ll~nLs~~~~n~~~i~~~~  193 (334)
                      -++     ..-++.+.++.|||..+.+|..+-+..-+|.  |..+  +..++.+++ .+++.+-|++++.++...+... 
T Consensus       139 ~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~f--t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e-  215 (353)
T KOG2973|consen  139 CDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPF--TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDE-  215 (353)
T ss_pred             hCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcc--cccchhhhccchHHHHHhhhccchhHHHHhcc-
Confidence            322     2356778899999999999999988774432  2222  223444444 5668888999999998888763 


Q ss_pred             chHHHHHHHhcCChHHHHHHHHHHhcCCCc-hhhhhhhHHHHHHHhhcCC---ccchhHHhhcHHHHHHHHHHhcCCcch
Q psy12638        194 QLELLMIQAFTQKNILLLKVIRNMSIHSNV-KHYFVDYIGDIANCVQKEK---DENIKLECLGTLEVINFIGTAASDPIS  269 (334)
Q Consensus       194 gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~-~~~f~~~i~~L~~~l~~~~---~~~~~ve~Lg~leav~~lg~la~~~~~  269 (334)
                      ++..|-.++.            =+|.-+.- .+.+.+.=..| ..+...+   .++.+.-+     .+.+|=.++....+
T Consensus       216 ~~~lLp~iLl------------Plagpee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~-----llEai~lLcaT~~G  277 (353)
T KOG2973|consen  216 SINLLPAILL------------PLAGPEELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKM-----LLEALLLLCATRAG  277 (353)
T ss_pred             hHHHHHHHHh------------hcCCccccCHHHHhcCCHhh-hcCCccccCCCChHHHHH-----HHHHHHHHHhhhHh
Confidence            3332222221            11211100 00000111111 2232211   11111111     12233334445567


Q ss_pred             HHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy12638        270 AEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC  307 (334)
Q Consensus       270 ~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~  307 (334)
                      ++.+.+.| +.++++.+-...+|+|+-. ++.-+.+|+
T Consensus       278 Re~lR~kg-vYpilRElhk~e~ded~~~-ace~vvq~L  313 (353)
T KOG2973|consen  278 REVLRSKG-VYPILRELHKWEEDEDIRE-ACEQVVQML  313 (353)
T ss_pred             HHHHHhcC-chHHHHHHhcCCCcHHHHH-HHHHHHHHH
Confidence            88888888 5778888875555555443 444444444

>KOG2759|consensus

Probab=97.51  E-value=0.0047  Score=60.05  Aligned_cols=260  Identities=16%  Similarity=0.183  Sum_probs=173.5

Q ss_pred             chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHH----HhcCChHHHHHhccCCchHHHHHHHHHHccCChhhhhHhh
Q psy12638         73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKI----IKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFA  148 (334)
Q Consensus        73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~i----v~~g~Ip~Lv~lL~~~~~~~~al~~L~~LS~~~~~r~~i~  148 (334)
                      =++.+++|..++.-+.+.+.+++.-|+.....+-.-    +..|.+..+..--.+++....|++.|--+-..++.|..|.
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v  195 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV  195 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence            456778888888888888888888888654333322    2233333222222345666778888999999999999999


Q ss_pred             ccCcHHHHHHHh-ccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCC-hHH---HHHHHHHHhcCCCc
Q psy12638        149 YTNCMSLLMNML-LVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQK-NIL---LLKVIRNMSIHSNV  223 (334)
Q Consensus       149 ~t~~i~~Lv~LL-~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~-d~~---~~k~l~nLa~~~~~  223 (334)
                      ..+|+..++..+ .+..+-+++-..+-...-|++++.-++.+.+.+-++.|.+.+.++. +.+   .+.++||+-...+.
T Consensus       196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~  275 (442)
T KOG2759|consen  196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD  275 (442)
T ss_pred             ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence            999999999999 4444556666665555688999999999988889999998887643 433   47779999988765


Q ss_pred             hhhh--------hhhHHHHHHHhhcCC-ccchhHHhhcHH-----HHHHH------------HHHhcCCc---------c
Q psy12638        224 KHYF--------VDYIGDIANCVQKEK-DENIKLECLGTL-----EVINF------------IGTAASDP---------I  268 (334)
Q Consensus       224 ~~~f--------~~~i~~L~~~l~~~~-~~~~~ve~Lg~l-----eav~~------------lg~la~~~---------~  268 (334)
                      ++.+        ..-+.+-++.+.+++ .++=+.+-+..+     +.+.-            -|.+.=+|         +
T Consensus       276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e  355 (442)
T KOG2759|consen  276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE  355 (442)
T ss_pred             hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence            4442        344555566666665 122223333222     11222            23332222         1


Q ss_pred             hHHHhhhC--CchHHHHHHhccccCCchHHHHH-HHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        269 SAEHFCKN--STVDLLINLLKEMQEDDEIVLQI-LYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       269 ~~~~l~~~--g~I~~Lv~LL~~~~~dde~vlqi-~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ++..+.+.  .++..|+.+|.++.  |.+++++ ++=++...+|-+--..++.+.|.-..+.+||+-+|
T Consensus       356 Na~rlnennyellkiL~~lLe~s~--Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d  422 (442)
T KOG2759|consen  356 NADRLNENNYELLKILIKLLETSN--DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED  422 (442)
T ss_pred             hHHHHhhccHHHHHHHHHHHhcCC--CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC
Confidence            34455444  47888999998533  4555555 88899999888866678888899988899998764

>PRK09687 putative lyase; Provisional

Probab=97.49  E-value=0.005  Score=57.82  Aligned_cols=93  Identities=16%  Similarity=0.121  Sum_probs=66.3

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCChhhhhHhhc
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIEDRVKAMFAY  149 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~~~r~~i~~  149 (334)
                      -++.|.++|.+++..++..|+..|..+..          ..+++.+..++++  +..|..++.+|.+|...+..     .
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~   88 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q   88 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence            57788889999999999999888887763          4456777777754  45688888888888764432     2


Q ss_pred             cCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638        150 TNCMSLLMNMLLVEQDDETDNVLVALCINL  179 (334)
Q Consensus       150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL  179 (334)
                      ..+++.|..++.+.++..+...++..+-++
T Consensus        89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~  118 (280)
T PRK09687         89 DNVFNILNNLALEDKSACVRASAINATGHR  118 (280)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            346788887866666667766666665554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.47  E-value=0.00011  Score=48.16  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             ChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHcc
Q psy12638        101 DTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLS  138 (334)
Q Consensus       101 d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS  138 (334)
                      +++++..+++.|+||+|+++|++  ++.++.|+.+|.|||
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            57899999999999999999964  467899999999987

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05536 Neurochondrin: Neurochondrin

Probab=97.41  E-value=0.0049  Score=63.13  Aligned_cols=149  Identities=17%  Similarity=0.163  Sum_probs=115.4

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChh----HHHHHHhcCChHHHHHhccCC---------chHHHHHHHHHHcc
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN----LREKIIKIGFLPKLVSLLEEG---------KHQKIILQLLYHLS  138 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~----~r~~iv~~g~Ip~Lv~lL~~~---------~~~~~al~~L~~LS  138 (334)
                      .++..+++|++.+++-+-.++-++-++....+    .+..+.++=+.+-|-+||+++         ..+.+|+++|.-.|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            46778899999998888899999999987543    344566655566777888541         25788999999999


Q ss_pred             CChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCCh--HHHHHHHHH
Q psy12638        139 IEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKN--ILLLKVIRN  216 (334)
Q Consensus       139 ~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d--~~~~k~l~n  216 (334)
                      .+++....-.-.+.||.|++.+.++++.....++...+..++..++.++.+.+.|+++.|.+...++..  ..+++++.+
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~  165 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLN  165 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHH
Confidence            998876555556799999999987666466677889999999999999999999999999999887433  235555555


Q ss_pred             HhcC
Q psy12638        217 MSIH  220 (334)
Q Consensus       217 La~~  220 (334)
                      +...
T Consensus       166 Lls~  169 (543)
T PF05536_consen  166 LLSR  169 (543)
T ss_pred             HHHh
Confidence            4443

>PRK09687 putative lyase; Provisional

Probab=97.20  E-value=0.011  Score=55.64  Aligned_cols=77  Identities=8%  Similarity=-0.016  Sum_probs=47.7

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc-cC--
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL-EE--  123 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL-~~--  123 (334)
                      |..|+..|.++..          ..+.+.+.+++.++++.++..|+.+|.-|...+..     ...++|.|..++ ++  
T Consensus        40 R~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d  104 (280)
T PRK09687         40 RISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKS  104 (280)
T ss_pred             HHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCC
Confidence            3456666666542          34667777777777777788877777777653322     224556666663 33  


Q ss_pred             CchHHHHHHHHHHcc
Q psy12638        124 GKHQKIILQLLYHLS  138 (334)
Q Consensus       124 ~~~~~~al~~L~~LS  138 (334)
                      +..+..|+..|.+++
T Consensus       105 ~~VR~~A~~aLG~~~  119 (280)
T PRK09687        105 ACVRASAINATGHRC  119 (280)
T ss_pred             HHHHHHHHHHHhccc
Confidence            345666777777764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.19  E-value=0.0082  Score=60.65  Aligned_cols=161  Identities=19%  Similarity=0.254  Sum_probs=102.4

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh----
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSL----  120 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~l----  120 (334)
                      --|+.|+.++.++.  ..+.+.+... .++.+.+++.+++..++..|+.++..+..+++...     ..+|++++.    
T Consensus       129 ~VRk~A~~~l~~i~--~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~L~~~  200 (526)
T PF01602_consen  129 YVRKKAALALLKIY--RKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-----SLIPKLIRILCQL  200 (526)
T ss_dssp             HHHHHHHHHHHHHH--HHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-----THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--ccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-----hhHHHHHHHhhhc
Confidence            45667777777763  2233333334 79999999999999999999999999922222211     445555444    


Q ss_pred             cc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHH
Q psy12638        121 LE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELL  198 (334)
Q Consensus       121 L~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~L  198 (334)
                      ++  +|-.+...+.+|..++..+.....-  ...++.+..++.+ .+..+.-+++.++..+...+.    +.. .++++|
T Consensus       201 l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l~~~~~----~~~-~~~~~L  272 (526)
T PF01602_consen  201 LSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQS-SSPSVVYEAIRLIIKLSPSPE----LLQ-KAINPL  272 (526)
T ss_dssp             HTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSHH----HHH-HHHHHH
T ss_pred             ccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhc-cccHHHHHHHHHHHHhhcchH----HHH-hhHHHH
Confidence            44  3345777888888887654322200  3467888888874 455665667777777766555    222 467788


Q ss_pred             HHHHhcCChHH---HHHHHHHHhcCC
Q psy12638        199 MIQAFTQKNIL---LLKVIRNMSIHS  221 (334)
Q Consensus       199 v~~l~~~~d~~---~~k~l~nLa~~~  221 (334)
                      +.++.+.+..+   ++..+..++...
T Consensus       273 ~~lL~s~~~nvr~~~L~~L~~l~~~~  298 (526)
T PF01602_consen  273 IKLLSSSDPNVRYIALDSLSQLAQSN  298 (526)
T ss_dssp             HHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred             HHHhhcccchhehhHHHHHHHhhccc
Confidence            88876433323   466677777665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2160|consensus

Probab=97.18  E-value=0.026  Score=53.93  Aligned_cols=128  Identities=15%  Similarity=0.135  Sum_probs=99.8

Q ss_pred             cCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHH
Q psy12638         81 MIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLM  157 (334)
Q Consensus        81 ~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv  157 (334)
                      ++-+.+-++.|+.-|.-+..+-+|-..+++.|+.++++..++  ++..|..|+.++...+.+ +...+.+-+.|+.++|+
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            344557788888888888888899999999999999999885  446899999999999765 78999999999999999


Q ss_pred             HHhccCCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcCChH
Q psy12638        158 NMLLVEQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQKNI  208 (334)
Q Consensus       158 ~LL~~~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~  208 (334)
                      .++.+.++..+...++-.++.| -.++-....+...+|+..|.+.+.+++..
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~  224 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTS  224 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcc
Confidence            9998655555433333223333 34566688888889999998887765443

>KOG1789|consensus

Probab=97.07  E-value=0.06  Score=57.94  Aligned_cols=281  Identities=13%  Similarity=0.105  Sum_probs=168.8

Q ss_pred             HHHHHHHhccc-chh----hHHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc-
Q psy12638         49 EGRQDSRKLSV-YHV----NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL-  121 (334)
Q Consensus        49 ~A~~~L~~LSi-~~e----nk~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL-  121 (334)
                      -++++|+++-. +++    .-.+...-|-.+.+...+.+ ++.+++..|+..+.-+..+.++-..|++.|.+..|..+| 
T Consensus      1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred             HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh
Confidence            46788887743 231    12344455777777766655 567899999999999999999999999999999999999 


Q ss_pred             cCCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc----chHHHHHhc-----
Q psy12638        122 EEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS----RNAELMLKN-----  192 (334)
Q Consensus       122 ~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~----~n~~~i~~~-----  192 (334)
                      +.|..++.++-+||-|+...+.-.+-.+.|++..+.+++-.....+..-.++.++..|..|+    +.+--.++-     
T Consensus      1824 S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f 1903 (2235)
T KOG1789|consen 1824 SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIF 1903 (2235)
T ss_pred             cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHH
Confidence            57899999999999999987666666677888888888866555565555556777775553    222111110     


Q ss_pred             -----CchHHHHHHHhcCC-hHHH-------HH---HHHHHh-------------cCCCchhh--h------hhhHHHHH
Q psy12638        193 -----RQLELLMIQAFTQK-NILL-------LK---VIRNMS-------------IHSNVKHY--F------VDYIGDIA  235 (334)
Q Consensus       193 -----~gl~~Lv~~l~~~~-d~~~-------~k---~l~nLa-------------~~~~~~~~--f------~~~i~~L~  235 (334)
                           ++=+..|...-.+. .|.+       -+   .++.++             .|+-..+.  |      ...-+...
T Consensus      1904 ~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~ 1983 (2235)
T KOG1789|consen 1904 ADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSIN 1983 (2235)
T ss_pred             HHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhh
Confidence                 11122222211111 1110       00   111111             01100000  0      00011111


Q ss_pred             HH-hhcCC-----ccchhHHhhcHH----------------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCc
Q psy12638        236 NC-VQKEK-----DENIKLECLGTL----------------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD  293 (334)
Q Consensus       236 ~~-l~~~~-----~~~~~ve~Lg~l----------------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dd  293 (334)
                      +. +...+     ...++.+.|...                -....+..+.-.|+.++.+-.-|-+|.++.-..-..  .
T Consensus      1984 R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n--~ 2061 (2235)
T KOG1789|consen 1984 REFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQN--T 2061 (2235)
T ss_pred             HHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcC--C
Confidence            11 11110     112333322211                123334455568999999999999999999775222  2


Q ss_pred             hHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638        294 EIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLND  332 (334)
Q Consensus       294 e~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d  332 (334)
                      -+-..+++++-.++.+.-|.+.+.+-..+- .++.+|+.
T Consensus      2062 s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~-~~m~~mkK 2099 (2235)
T KOG1789|consen 2062 SAPRSAIRVLHELSENQFCCDAMAQLPCID-GIMKSMKK 2099 (2235)
T ss_pred             cCcHHHHHHHHHHhhccHHHHHHhccccch-hhHHHHHh
Confidence            355778999999998888999888765555 57777764

>PTZ00429 beta-adaptin; Provisional

Probab=96.99  E-value=0.041  Score=58.42  Aligned_cols=247  Identities=16%  Similarity=0.132  Sum_probs=121.7

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CC
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EG  124 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~  124 (334)
                      |+.|+.++.|+  +..+.+.+.+.|.++.|.++|...+..++.+|+.+|+-+......+-. ...+.+.+|...|.  ++
T Consensus       157 RKtAalai~Kl--y~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~E  233 (746)
T PTZ00429        157 RKTAAMGLGKL--FHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNE  233 (746)
T ss_pred             HHHHHHHHHHH--HhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCCh
Confidence            44555666554  333444445566777777777777777777777777777643211111 12233444444443  33


Q ss_pred             chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc--chHHHHHhcCchHHHHHHH
Q psy12638        125 KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS--RNAELMLKNRQLELLMIQA  202 (334)
Q Consensus       125 ~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~--~n~~~i~~~~gl~~Lv~~l  202 (334)
                      -.|-..+.+|..-.-.++  ..  ....+..+...|.+ .++.+.-+++.++++++...  +....... .--++|+.++
T Consensus       234 W~Qi~IL~lL~~y~P~~~--~e--~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~  307 (746)
T PTZ00429        234 WGQLYILELLAAQRPSDK--ES--AETLLTRVLPRMSH-QNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS  307 (746)
T ss_pred             HHHHHHHHHHHhcCCCCc--HH--HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh
Confidence            344445555533211111  00  01345666666665 45666666767777775432  21121111 1125666653


Q ss_pred             hcCChHHH---HHHHHHHhcCCCch-----hhh------hhh-----HHHHHHHhhcCCccchhHHhhcHH---------
Q psy12638        203 FTQKNILL---LKVIRNMSIHSNVK-----HYF------VDY-----IGDIANCVQKEKDENIKLECLGTL---------  254 (334)
Q Consensus       203 ~~~~d~~~---~k~l~nLa~~~~~~-----~~f------~~~-----i~~L~~~l~~~~~~~~~ve~Lg~l---------  254 (334)
                       ++.....   ++.++-+....+..     ..|      ..+     +.-|..+..+...++.+-|.....         
T Consensus       308 -ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r  386 (746)
T PTZ00429        308 -RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVV  386 (746)
T ss_pred             -CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHH
Confidence             3322222   33344444433321     112      112     222333332222223333332222         


Q ss_pred             HHHHHHHHhcCC-cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638        255 EVINFIGTAASD-PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS  311 (334)
Q Consensus       255 eav~~lg~la~~-~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~  311 (334)
                      +++.++|.+|.. +..+.     ..+..|.++++.+.   +++.|++.++..+.+..+
T Consensus       387 ~aIrAIg~lA~k~~~~a~-----~cV~~Ll~ll~~~~---~~v~e~i~vik~IlrkyP  436 (746)
T PTZ00429        387 EVVRAIASLAIKVDSVAP-----DCANLLLQIVDRRP---ELLPQVVTAAKDIVRKYP  436 (746)
T ss_pred             HHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHCc
Confidence            688999999973 33232     26788888886432   477788888887765444

>PF05536 Neurochondrin: Neurochondrin

Probab=96.91  E-value=0.0058  Score=62.65  Aligned_cols=131  Identities=15%  Similarity=0.104  Sum_probs=98.0

Q ss_pred             HHHHhcccchh----hHHHhHhCCcchHHHhhccC-------CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHh
Q psy12638         52 QDSRKLSVYHV----NKEQMANLNLIEKLPRILMI-------EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSL  120 (334)
Q Consensus        52 ~~L~~LSi~~e----nk~~m~~~g~I~~Lv~LL~~-------~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~l  120 (334)
                      ..+.|+--..+    ++..+.++=..+.|-+||.+       +....+..|+.+|.-++.+++....=.=.+-||.|+++
T Consensus        27 ~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~  106 (543)
T PF05536_consen   27 LLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEI  106 (543)
T ss_pred             HHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHH
Confidence            33455554322    34456666556788899988       44678999999999999999876333334679999999


Q ss_pred             cc--CC-chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc
Q psy12638        121 LE--EG-KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR  184 (334)
Q Consensus       121 L~--~~-~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~  184 (334)
                      +.  ++ ....-|+..|+.++..++++..+.+.|+|+.|.+.+.+  .+.....++.++.++....+
T Consensus       107 l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~  171 (543)
T PF05536_consen  107 LSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLG  171 (543)
T ss_pred             HHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcc
Confidence            94  33 45778999999999999999999999999999999986  33334556688888754433

>KOG0946|consensus

Probab=96.88  E-value=0.22  Score=52.21  Aligned_cols=209  Identities=16%  Similarity=0.169  Sum_probs=144.0

Q ss_pred             CcchHHHhhccCC-ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc----CCchHHHHHHHHHHccCCh----
Q psy12638         71 NLIEKLPRILMIE-DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE----EGKHQKIILQLLYHLSIED----  141 (334)
Q Consensus        71 g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~----~~~~~~~al~~L~~LS~~~----  141 (334)
                      ..|++|+.-+.+. -.+=++.|++.|.-+|-  ..|.... +-+.++|+..|.    +++.-.+++-+++++-..+    
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            3567777655442 23447889999998884  6666655 556799999994    5678899999999995544    


Q ss_pred             ---hhh----------hHhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHccC--cchHHHHHh-cCchHHHHHHHhc
Q psy12638        142 ---RVK----------AMFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLALN--SRNAELMLK-NRQLELLMIQAFT  204 (334)
Q Consensus       142 ---~~r----------~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~--~~n~~~i~~-~~gl~~Lv~~l~~  204 (334)
                         ..+          .+|.. .|-|..|+..+.... -.++.-++.++.++-.+  .+-+..+.. --|+..+|+.+-.
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~D-F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFD-FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhc-hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               222          22333 467888899887543 34445566777766333  344555554 3699999999988


Q ss_pred             CChHH---HHHHHHHHhcCCCchhh---hhhhHHHHHHHhhcCCccc--hhH-HhhcHHHHHHHHHHhcC-CcchHHHhh
Q psy12638        205 QKNIL---LLKVIRNMSIHSNVKHY---FVDYIGDIANCVQKEKDEN--IKL-ECLGTLEVINFIGTAAS-DPISAEHFC  274 (334)
Q Consensus       205 ~~d~~---~~k~l~nLa~~~~~~~~---f~~~i~~L~~~l~~~~~~~--~~v-e~Lg~leav~~lg~la~-~~~~~~~l~  274 (334)
                      +.+|+   .+-++..+..++++-|.   |--+..+|..++.+.++-+  .++ +||      +.+-++-+ +..+...|.
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL------~ll~NLLK~N~SNQ~~Fr  251 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCL------ILLNNLLKNNISNQNFFR  251 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------HHHHHHHhhCcchhhHHh
Confidence            88774   45567778888887766   7788899999998766333  333 343      44456655 455667889


Q ss_pred             hCCchHHHHHHhccc
Q psy12638        275 KNSTVDLLINLLKEM  289 (334)
Q Consensus       275 ~~g~I~~Lv~LL~~~  289 (334)
                      +.+.||.|..+|...
T Consensus       252 E~~~i~rL~klL~~f  266 (970)
T KOG0946|consen  252 EGSYIPRLLKLLSVF  266 (970)
T ss_pred             ccccHHHHHhhcCcc
Confidence            999999999999753

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.86  E-value=0.0017  Score=41.83  Aligned_cols=38  Identities=29%  Similarity=0.357  Sum_probs=33.1

Q ss_pred             hhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccC
Q psy12638        102 TNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSI  139 (334)
Q Consensus       102 ~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~  139 (334)
                      ++++..+++.|+||+|+++++  +++.+..++.+|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999995  45678999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=96.60  E-value=0.0022  Score=48.49  Aligned_cols=80  Identities=19%  Similarity=0.305  Sum_probs=59.6

Q ss_pred             chHHHhhc-cCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhhc
Q psy12638         73 IEKLPRIL-MIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAY  149 (334)
Q Consensus        73 I~~Lv~LL-~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~~  149 (334)
                      ||.|++.| .++++.++..|+.+|.++- ++         .++|.|+++++++  ..+..|+..|..+.          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-DP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            58899988 8899999999999999553 12         4499999999654  56888888888773          3


Q ss_pred             cCcHHHHHHHhccCCCCchHHHH
Q psy12638        150 TNCMSLLMNMLLVEQDDETDNVL  172 (334)
Q Consensus       150 t~~i~~Lv~LL~~~~~~~~~~~~  172 (334)
                      ..+++.|.+++.+.++..++..+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a   83 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAA   83 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHH
Confidence            44899999999865444444443

>KOG2734|consensus

Probab=96.42  E-value=0.29  Score=48.25  Aligned_cols=170  Identities=17%  Similarity=0.161  Sum_probs=123.5

Q ss_pred             cCCcceeecccCcchh---------HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-
Q psy12638         33 RGNCNCYGLIVPKSKR---------EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-  102 (334)
Q Consensus        33 r~~~~~~~~~~~~~~~---------~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-  102 (334)
                      |.|.++++-++.+-.+         +...-+.-+|..|+==.-.++.++|+.|+.||.+.|.++-...+.+|--|.-.+ 
T Consensus        78 ~~Nqe~RiK~~dnPeKFmeSE~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv  157 (536)
T KOG2734|consen   78 RKNQELRIKYPDNPEKFMESEVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDV  157 (536)
T ss_pred             hhhHHhhccCCCCHHHHHHhhccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcc
Confidence            5666777777665555         566677778888887778899999999999999999999999999999887321 


Q ss_pred             ---------hHHHHHHhcCChHHHHHhcc--CC------chHHHHHHHHHHc-cCChhhhhHhhccCcHHHHHHHhc-cC
Q psy12638        103 ---------NLREKIIKIGFLPKLVSLLE--EG------KHQKIILQLLYHL-SIEDRVKAMFAYTNCMSLLMNMLL-VE  163 (334)
Q Consensus       103 ---------~~r~~iv~~g~Ip~Lv~lL~--~~------~~~~~al~~L~~L-S~~~~~r~~i~~t~~i~~Lv~LL~-~~  163 (334)
                               ..-.++|+.++|+.||.-+.  ++      ..-+.+++++-|+ ..++.....+++.|-+.+|..-+. .+
T Consensus       158 ~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~  237 (536)
T KOG2734|consen  158 LYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKA  237 (536)
T ss_pred             cccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhccc
Confidence                     24568899999999999883  21      1256788888888 556788888889988888777443 32


Q ss_pred             CCCchHHHHHHHH-HHHccCcchHHHHHhcCchHHHHHHH
Q psy12638        164 QDDETDNVLVALC-INLALNSRNAELMLKNRQLELLMIQA  202 (334)
Q Consensus       164 ~~~~~~~~~~~ll-~nLs~~~~n~~~i~~~~gl~~Lv~~l  202 (334)
                      +.+....=+..++ +-|....+|+.....-+|+..+++.+
T Consensus       238 ~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~l  277 (536)
T KOG2734|consen  238 AFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQL  277 (536)
T ss_pred             CcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhc
Confidence            3333222222333 33444556888888888988877664

>PTZ00429 beta-adaptin; Provisional

Probab=96.34  E-value=0.61  Score=49.71  Aligned_cols=136  Identities=15%  Similarity=0.092  Sum_probs=80.0

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFA  148 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~  148 (334)
                      +++++.+.+.+.++-+++.|+-++.++-. ++   +.+.+.|.++.|.++|.  ++.....|+.+|+.+......+-.+.
T Consensus       141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~  217 (746)
T PTZ00429        141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESS  217 (746)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHH
Confidence            34556778888899999999999999854 23   23456789999999995  56678889999999976543222221


Q ss_pred             ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHH
Q psy12638        149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRN  216 (334)
Q Consensus       149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~n  216 (334)
                       .+.+..|...+... ++-.+-..+.++..  ..++......  ..+..+..++.+.+..+++.+++.
T Consensus       218 -~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~--y~P~~~~e~~--~il~~l~~~Lq~~N~AVVl~Aik~  279 (746)
T PTZ00429        218 -NEWVNRLVYHLPEC-NEWGQLYILELLAA--QRPSDKESAE--TLLTRVLPRMSHQNPAVVMGAIKV  279 (746)
T ss_pred             -HHHHHHHHHHhhcC-ChHHHHHHHHHHHh--cCCCCcHHHH--HHHHHHHHHhcCCCHHHHHHHHHH
Confidence             22344455555421 22221222333322  2222222211  245556666677777776555443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.33  E-value=0.31  Score=53.16  Aligned_cols=59  Identities=22%  Similarity=0.322  Sum_probs=43.0

Q ss_pred             hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHc
Q psy12638         69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHL  137 (334)
Q Consensus        69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~L  137 (334)
                      ..+.++.|++.|.++++.++..|+..|..+.          ..+++|.|+..|+++  ..+..|+..|..+
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l  679 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLREL  679 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3447778888888888889998888888664          244678888888544  4566777777655

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.0086  Score=59.97  Aligned_cols=134  Identities=13%  Similarity=0.081  Sum_probs=108.8

Q ss_pred             HHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhc--cCCc
Q psy12638         50 GRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL--EEGK  125 (334)
Q Consensus        50 A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL--~~~~  125 (334)
                      +..||+.+|- ..-=|..+.+..++++|+++|+.++-.+.-.++..++|+..- ...+..|.+.|+|..|+.++  +++.
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda  488 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA  488 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence            3566666663 345788889999999999999998888888899999999986 57899999999999999999  4667


Q ss_pred             hHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc
Q psy12638        126 HQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR  184 (334)
Q Consensus       126 ~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~  184 (334)
                      +|..+..+|+|+-..  ++-+-++-..-|+..++++.. .+.-.++...+.++-|++.|.+
T Consensus       489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~N-Dpc~~vq~q~lQilrNftc~~~  548 (743)
T COG5369         489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTN-DPCFKVQHQVLQILRNFTCDTS  548 (743)
T ss_pred             hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhc-CcccccHHHHHHHHHhcccccc
Confidence            899999999999654  444556666678999999985 5666777778899999987654

>KOG2171|consensus

Probab=96.21  E-value=0.2  Score=54.35  Aligned_cols=186  Identities=16%  Similarity=0.164  Sum_probs=106.8

Q ss_pred             hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH----HhccC
Q psy12638         48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLV----SLLEE  123 (334)
Q Consensus        48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv----~lL~~  123 (334)
                      +.|...+-.||..-.-|.  +-.=+.+.+..+++|.+-.-+..|+.+|.-.+.  ..-+.|..  -+|+++    ..|++
T Consensus       327 ~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E--Gc~~~m~~--~l~~Il~~Vl~~l~D  400 (1075)
T KOG2171|consen  327 RAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTEWKERHAALLALSVIAE--GCSDVMIG--NLPKILPIVLNGLND  400 (1075)
T ss_pred             HHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--ccHHHHHH--HHHHHHHHHHhhcCC
Confidence            345666666665422111  111244566778899999999999888888875  33333332  455554    44555


Q ss_pred             C--chHHHHHHHHHHccCCh-hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638        124 G--KHQKIILQLLYHLSIED-RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI  200 (334)
Q Consensus       124 ~--~~~~~al~~L~~LS~~~-~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~  200 (334)
                      |  ..|..|+..+.++|.|= ..-......-.+|.|+..+.+..+..++..+++.+.|.+.+  +-..+.+ ..++.+++
T Consensus       401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~--~~~~~l~-pYLd~lm~  477 (1075)
T KOG2171|consen  401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE--CDKSILE-PYLDGLME  477 (1075)
T ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh--CcHHHHH-HHHHHHHH
Confidence            4  57888999999999982 22222223345668899998766778877777777887543  3333333 46666666


Q ss_pred             ----HHhcCChHHH-HHHHHHHhcCCCchhh-hhhhHHH----HHHHhhcCC
Q psy12638        201 ----QAFTQKNILL-LKVIRNMSIHSNVKHY-FVDYIGD----IANCVQKEK  242 (334)
Q Consensus       201 ----~l~~~~d~~~-~k~l~nLa~~~~~~~~-f~~~i~~----L~~~l~~~~  242 (334)
                          .+..+..+.+ =.++..++.-....+. |.+|.+.    |..++.+.+
T Consensus       478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~  529 (1075)
T KOG2171|consen  478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD  529 (1075)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence                3333443332 2234444443333333 5444333    334454544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.10  E-value=0.12  Score=50.62  Aligned_cols=158  Identities=15%  Similarity=0.225  Sum_probs=102.5

Q ss_pred             cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCC---hH---HHHHHHHHHhcCCCchh
Q psy12638        152 CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQK---NI---LLLKVIRNMSIHSNVKH  225 (334)
Q Consensus       152 ~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~---d~---~~~k~l~nLa~~~~~~~  225 (334)
                      ..+.+..++.+.+ .++.-...+++-.+..|++..+.+.+. .++.++-+.+...   +.   .++|++|.+-......+
T Consensus        26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l-~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~  103 (371)
T PF14664_consen   26 FGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKL-HIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK  103 (371)
T ss_pred             HHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHc-CCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence            3444444555433 666555556676777888888888876 5777777766432   11   47999999888866665


Q ss_pred             hhhhhHH-HHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHH
Q psy12638        226 YFVDYIG-DIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVF  303 (334)
Q Consensus       226 ~f~~~i~-~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l  303 (334)
                      .|...+. .++. +.++..+.+---|+      ..+..++- +|+   ++.+.|++++|.+.+..+.-  ++.-.++.++
T Consensus       104 ~~~~~vvralva-iae~~~D~lr~~cl------etL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~--~~~~~l~~~l  171 (371)
T PF14664_consen  104 EIPRGVVRALVA-IAEHEDDRLRRICL------ETLCELALLNPE---LVAECGGIRVLLRALIDGSF--SISESLLDTL  171 (371)
T ss_pred             cCCHHHHHHHHH-HHhCCchHHHHHHH------HHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH--hHHHHHHHHH
Confidence            5654444 4444 44444333332333      33345554 555   88899999999999986443  3767789999


Q ss_pred             HHHHcCchhhHHHhhcCCcH
Q psy12638        304 YQICRHASCQNYLIKETDAP  323 (334)
Q Consensus       304 ~~l~~~~~~~~~i~~~~~i~  323 (334)
                      ..+..++.+|+.+....++-
T Consensus       172 L~lLd~p~tR~yl~~~~dL~  191 (371)
T PF14664_consen  172 LYLLDSPRTRKYLRPGFDLE  191 (371)
T ss_pred             HHHhCCcchhhhhcCCccHH
Confidence            99999999998776644433

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.72  E-value=0.47  Score=45.13  Aligned_cols=225  Identities=12%  Similarity=0.139  Sum_probs=133.1

Q ss_pred             HHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcC-ChHHHHHhcc----CCchHHHHHHHHHHccCChhhhhHhhc
Q psy12638         75 KLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIG-FLPKLVSLLE----EGKHQKIILQLLYHLSIEDRVKAMFAY  149 (334)
Q Consensus        75 ~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g-~Ip~Lv~lL~----~~~~~~~al~~L~~LS~~~~~r~~i~~  149 (334)
                      .|-+++++=+.-.+-.|+++|-||.++++-|..+-..+ +=-.++++++    ..+.|..++-+.+.|+.....-.-|-+
T Consensus       153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K  232 (432)
T COG5231         153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDK  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34445555566668889999999999999998877544 4457777775    345788899999999998866544433


Q ss_pred             -cCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-Cc-chHHHHHhcCchHHHHHHHhcC--ChHHHHHHHHHHhcC-CCc
Q psy12638        150 -TNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NS-RNAELMLKNRQLELLMIQAFTQ--KNILLLKVIRNMSIH-SNV  223 (334)
Q Consensus       150 -t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~-~n~~~i~~~~gl~~Lv~~l~~~--~d~~~~k~l~nLa~~-~~~  223 (334)
                       -+-|--|++++....-+.+-.-+.+++.|+.- .+ +....+.-.|-+.+-++.+.++  .|..+..=+-++-.- ..+
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence             34677777887653333333334456667633 11 2333444445566666666654  344332222221110 011


Q ss_pred             hhh---hhhhHHHH-----------------------------------HHHhhcCCccchhHHhhcHHHHHHHHHHhcC
Q psy12638        224 KHY---FVDYIGDI-----------------------------------ANCVQKEKDENIKLECLGTLEVINFIGTAAS  265 (334)
Q Consensus       224 ~~~---f~~~i~~L-----------------------------------~~~l~~~~~~~~~ve~Lg~leav~~lg~la~  265 (334)
                      .+.   |+.++..|                                   .+.+......-.++      -|+--++.+.+
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~------vAc~Di~~~Vr  386 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWIC------VACSDIFQLVR  386 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEe------eeHhhHHHHHH
Confidence            111   33333333                                   22221111000000      12222444444


Q ss_pred             -CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy12638        266 -DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC  307 (334)
Q Consensus       266 -~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~  307 (334)
                       .|+....+-+.|+=..+.+|++  .+|+|+.-+++.+++++.
T Consensus       387 ~~PE~~~vl~Kyg~k~~im~L~n--h~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         387 ASPEINAVLSKYGVKEIIMNLIN--HDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hCchHHHHHHHhhhHHHHHHHhc--CCCchhhHHHHHHHHHHH
Confidence             7999999999999999999997  788999999988887764

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.66  E-value=0.12  Score=45.74  Aligned_cols=112  Identities=18%  Similarity=0.193  Sum_probs=81.1

Q ss_pred             ccCCChhHHHHHHHHHHhhcCChhHHHHHHhc----------------CChHHHHHhccC--------CchHHHHHHHHH
Q psy12638         80 LMIEDSNLQSSTLKLLFNLSFDTNLREKIIKI----------------GFLPKLVSLLEE--------GKHQKIILQLLY  135 (334)
Q Consensus        80 L~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~----------------g~Ip~Lv~lL~~--------~~~~~~al~~L~  135 (334)
                      +..++...-..+.++|.||+..++....+...                ..+..|+.++..        ..-.++.+.+|.
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            34455677888999999999998887766543                356788877732        124677889999


Q ss_pred             HccCChhhhhHhhccC-c---HHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhc
Q psy12638        136 HLSIEDRVKAMFAYTN-C---MSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKN  192 (334)
Q Consensus       136 ~LS~~~~~r~~i~~t~-~---i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~  192 (334)
                      |+|..+++|..|-..+ +   +..|+.+..+ .+..-+..++..+-|++++.+....+...
T Consensus        84 NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~-~s~iRR~Gva~~IrNccFd~~~H~~LL~~  143 (192)
T PF04063_consen   84 NLSQLPEGRQFFLDPQRYDGPLQKLLPFTEH-KSVIRRGGVAGTIRNCCFDTDSHEWLLSD  143 (192)
T ss_pred             HhcCCHHHHHHHhCchhhhhHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence            9999999999997753 3   5566666654 33343445667888999999888777753

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.54  E-value=0.11  Score=44.60  Aligned_cols=125  Identities=12%  Similarity=0.150  Sum_probs=95.8

Q ss_pred             HhHhCCcchHHHhhccCCCh------hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc----CCchHHHHHHHHH
Q psy12638         66 QMANLNLIEKLPRILMIEDS------NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE----EGKHQKIILQLLY  135 (334)
Q Consensus        66 ~m~~~g~I~~Lv~LL~~~~~------~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~----~~~~~~~al~~L~  135 (334)
                      +..+.|+++.|++++.++..      ..+..++.++..|-.+.-+-.+..+..+|.+++..++    ++...+.|+++|-
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE   85 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE   85 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence            34566899999999998874      7889999999999999875567889999999999995    3456888999999


Q ss_pred             HccCChhh-hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH--ccCcchHHHHHh
Q psy12638        136 HLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL--ALNSRNAELMLK  191 (334)
Q Consensus       136 ~LS~~~~~-r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL--s~~~~n~~~i~~  191 (334)
                      ++-..... ...+.+.=.++.|+..|.. ++.+++..+++++-=|  -.++..++.|.+
T Consensus        86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~~~r~~i~~  143 (160)
T PF11841_consen   86 SIVLNSPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKADDSKRKEIAE  143 (160)
T ss_pred             HHHhCCHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            99776544 5555555589999999985 6778888777766433  234444555554

>KOG4413|consensus

Probab=95.26  E-value=1.7  Score=41.62  Aligned_cols=231  Identities=15%  Similarity=0.159  Sum_probs=141.5

Q ss_pred             HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHH--HHhc-c-CCchHHHHHHHHHHc-cCChh
Q psy12638         68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKL--VSLL-E-EGKHQKIILQLLYHL-SIEDR  142 (334)
Q Consensus        68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~L--v~lL-~-~~~~~~~al~~L~~L-S~~~~  142 (334)
                      +..|+.+.++......|.++-+.|...+..+|-.+..-+.|-+......+  +.+- + ++..|...+.+...+ |..++
T Consensus       125 vNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  125 VNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence            46788888888888889999999999999999988888888777766543  3333 2 344455566666666 44566


Q ss_pred             hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCC--hHH--------HHH
Q psy12638        143 VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQK--NIL--------LLK  212 (334)
Q Consensus       143 ~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~--d~~--------~~k  212 (334)
                      .-..-..+|-+..|-.=+.-..+.-+.-.++.+.+-|+.....++-+.++|-++ ++.-.++|.  ||.        ..|
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglId-licnIIsGadsdPfekfralmgfgk  283 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLID-LICNIISGADSDPFEKFRALMGFGK  283 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHH-HHHHHhhCCCCCcHHHHHHHHHHHH
Confidence            666666677777666555421333333345567778877777888888875444 444445543  342        133


Q ss_pred             HHHHHhcCCCchhh----hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcc
Q psy12638        213 VIRNMSIHSNVKHY----FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKE  288 (334)
Q Consensus       213 ~l~nLa~~~~~~~~----f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~  288 (334)
                      ...+.+..+-..+.    +.-++..-..++..++  .-.++.     |+-++|.+.++.+.++++.+.| -|..-.++..
T Consensus       284 ffgkeaimdvseeaicealiiaidgsfEmiEmnD--pdaiea-----AiDalGilGSnteGadlllkTg-ppaaehllar  355 (524)
T KOG4413|consen  284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMND--PDAIEA-----AIDALGILGSNTEGADLLLKTG-PPAAEHLLAR  355 (524)
T ss_pred             HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCC--chHHHH-----HHHHHHhccCCcchhHHHhccC-ChHHHHHHHH
Confidence            44455554433222    2233333334443332  222333     6788999999999899988887 4555555532


Q ss_pred             --ccCCchHHHHHHHHHHHHH
Q psy12638        289 --MQEDDEIVLQILYVFYQIC  307 (334)
Q Consensus       289 --~~~dde~vlqi~~~l~~l~  307 (334)
                        .+.-..-+...++|+..++
T Consensus       356 afdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  356 AFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             HhcccccchHHHHHHHHHHhh
Confidence              2222334444566666665

>KOG1789|consensus

Probab=95.22  E-value=1  Score=49.10  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc---cCCc
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL---EEGK  125 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL---~~~~  125 (334)
                      -|+..+..+..+.++-..|.+.|++..|+.+|-| .+..++.++..||-|+..++.-.+-.+.|++..+..++   .++.
T Consensus      1791 LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~Q 1869 (2235)
T KOG1789|consen 1791 LALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQ 1869 (2235)
T ss_pred             HHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHH
Confidence            3444444554566667778999999999999977 57889999999999999997766666677766666666   3556


Q ss_pred             hHHHHHHHHHHccCCh
Q psy12638        126 HQKIILQLLYHLSIED  141 (334)
Q Consensus       126 ~~~~al~~L~~LS~~~  141 (334)
                      ++..|+.+|..|--|.
T Consensus      1870 qRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1870 QRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            7777889999997764

>KOG2734|consensus

Probab=95.21  E-value=1.4  Score=43.62  Aligned_cols=194  Identities=11%  Similarity=0.139  Sum_probs=108.6

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCChh---h----h---hHhhccCcHHH
Q psy12638         88 QSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIEDR---V----K---AMFAYTNCMSL  155 (334)
Q Consensus        88 ~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~~---~----r---~~i~~t~~i~~  155 (334)
                      +...+.=+.-+|.-|+.-..+++.++++.|+.||+.  .+.....+-+|-.|...|-   +    +   ...+..+.++.
T Consensus       101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            455667788899999999999999999999999964  4566667777888876541   1    1   12223334444


Q ss_pred             HHHHhccCCCCch------HHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhhh
Q psy12638        156 LMNMLLVEQDDET------DNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFV  228 (334)
Q Consensus       156 Lv~LL~~~~~~~~------~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~  228 (334)
                      |++-+..- ++.+      ...+.+++.|+ ..++.-++.+++.|                                   
T Consensus       181 LvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~-----------------------------------  224 (536)
T KOG2734|consen  181 LVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQG-----------------------------------  224 (536)
T ss_pred             HHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhh-----------------------------------
Confidence            44433211 1111      11223344444 23333344444431                                   


Q ss_pred             hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccc------cC-CchHHHHHH
Q psy12638        229 DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEM------QE-DDEIVLQIL  300 (334)
Q Consensus       229 ~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~------~~-dde~vlqi~  300 (334)
                       .+..|+.-+......+    .-+. .+...++.+-. ..+++.++..-++|..+++-+...      +. +.|+.-+.-
T Consensus       225 -ll~WLL~rl~~k~~f~----aNk~-YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLF  298 (536)
T KOG2734|consen  225 -LLSWLLKRLKGKAAFD----ANKQ-YASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLF  298 (536)
T ss_pred             -HHHHHHHHHhcccCcc----hhHH-HHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHH
Confidence             2222222111100000    0000 13333444444 344777788888888888876532      22 346666667


Q ss_pred             HHHHHHHcCchhhHHHhhcCCcH
Q psy12638        301 YVFYQICRHASCQNYLIKETDAP  323 (334)
Q Consensus       301 ~~l~~l~~~~~~~~~i~~~~~i~  323 (334)
                      -|+.++..++..++.++.++++-
T Consensus       299 dcLCs~lm~~~nr~~Fl~~EGlq  321 (536)
T KOG2734|consen  299 DCLCSLLMAPANRERFLKGEGLQ  321 (536)
T ss_pred             HHHHHHhcChhhhhhhhccccHH
Confidence            78888889999999898876654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.15  E-value=0.06  Score=42.77  Aligned_cols=64  Identities=13%  Similarity=0.240  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc----CCchHHHHHHHHHHccCC-hhhhhHhhcc
Q psy12638         87 LQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE----EGKHQKIILQLLYHLSIE-DRVKAMFAYT  150 (334)
Q Consensus        87 l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~----~~~~~~~al~~L~~LS~~-~~~r~~i~~t  150 (334)
                      .+...++++.||++. +.+...+.+.|+||.+.....    +|-.++.|+..+-||+.. ++++..|++-
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            356678999999997 699999999999999999884    455799999999999875 7888888764

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG4413|consensus

Probab=94.89  E-value=2.4  Score=40.73  Aligned_cols=283  Identities=13%  Similarity=0.177  Sum_probs=162.2

Q ss_pred             cCCcceeecccCcchhH---HHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChh---H--
Q psy12638         33 RGNCNCYGLIVPKSKRE---GRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN---L--  104 (334)
Q Consensus        33 r~~~~~~~~~~~~~~~~---A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~---~--  104 (334)
                      |.|.+++..-..+-|+.   -+++|++|=.-.+  ..-..-+..|.|-+=|..++..++-.|.+-+.-+-.|.+   +  
T Consensus        43 qldpdifgfeNenhrekttlcVscLERLfkake--gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVse  120 (524)
T KOG4413|consen   43 QLDPDIFGFENENHREKTTLCVSCLERLFKAKE--GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSE  120 (524)
T ss_pred             hcCCCCcccccccccchhhhHHHHHHHHHhhcc--chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHH
Confidence            45566665554444443   4667776622111  011122344455555666777888777777776666643   2  


Q ss_pred             HHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHH--HHHHhccCCCCchHHHHHHHHHHH-
Q psy12638        105 REKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSL--LMNMLLVEQDDETDNVLVALCINL-  179 (334)
Q Consensus       105 r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~--Lv~LL~~~~~~~~~~~~~~ll~nL-  179 (334)
                      -.-.|++|+.|.++.+++  +.+.-..|...+..+|..+..-+.|.+++....  ++.+-.. .++-.+-.+..+++-+ 
T Consensus       121 illvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIieif  199 (524)
T KOG4413|consen  121 ILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEIF  199 (524)
T ss_pred             HHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHHH
Confidence            233458999999999995  445677788999999999888888877765443  4444432 2334444566777776 


Q ss_pred             ccCcchHHHHHhcCchHHHHHHHhcCC-hHHH----HHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhc
Q psy12638        180 ALNSRNAELMLKNRQLELLMIQAFTQK-NILL----LKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLG  252 (334)
Q Consensus       180 s~~~~n~~~i~~~~gl~~Lv~~l~~~~-d~~~----~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg  252 (334)
                      |..++.......+ |+--++..-.+|+ |.++    +.+...++.....++-.  .+.|..+..+++-.+.+.+  |-+.
T Consensus       200 SiSpesaneckkS-GLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPf--ekfr  276 (524)
T KOG4413|consen  200 SISPESANECKKS-GLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPF--EKFR  276 (524)
T ss_pred             hcCHHHHhHhhhh-hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcH--HHHH
Confidence            5556666666665 5555555556664 4432    55677787766555432  2555555555543332221  1121


Q ss_pred             HH-HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhc-cccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcH
Q psy12638        253 TL-EVINFIGTAASDPISAEHFCKNSTVDLLINLLK-EMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAP  323 (334)
Q Consensus       253 ~l-eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~-~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~  323 (334)
                      .+ .....+|..+-.+-..+.+++. .+..+-.-+. ....|.+.+-..+-++|.|-.+.+.++.+.+ ++-|
T Consensus       277 almgfgkffgkeaimdvseeaicea-liiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllk-Tgpp  347 (524)
T KOG4413|consen  277 ALMGFGKFFGKEAIMDVSEEAICEA-LIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLK-TGPP  347 (524)
T ss_pred             HHHHHHHHhcchHHhhcCHHHHHHH-HHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhc-cCCh
Confidence            11 2344555555432222233332 1222222222 1355778888889999999988888876554 5554

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.81  E-value=0.22  Score=46.06  Aligned_cols=188  Identities=14%  Similarity=0.146  Sum_probs=117.4

Q ss_pred             cCcchhHHHHHHHhcc-cchhhHHHh-HhCCcchHHHh-------hccCC-----ChhHHHHHHHHHHhhcCChhHHHHH
Q psy12638         43 VPKSKREGRQDSRKLS-VYHVNKEQM-ANLNLIEKLPR-------ILMIE-----DSNLQSSTLKLLFNLSFDTNLREKI  108 (334)
Q Consensus        43 ~~~~~~~A~~~L~~LS-i~~enk~~m-~~~g~I~~Lv~-------LL~~~-----~~~l~~~al~~L~NLS~d~~~r~~i  108 (334)
                      .|+.|++|+.-|.|-- .+++=...+ ..-|++..|++       .+..+     ...-.++|+.+|--++.|++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            4567778877775532 233322222 24577777654       33332     2367899999999999999999999


Q ss_pred             HhcCChHHHHHhccCC-------chHHHHHHHHHHccC--ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHH-HHHH
Q psy12638        109 IKIGFLPKLVSLLEEG-------KHQKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA-LCIN  178 (334)
Q Consensus       109 v~~g~Ip~Lv~lL~~~-------~~~~~al~~L~~LS~--~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~-ll~n  178 (334)
                      .++.+.--|-++|+..       ..|-.++++...|..  |.+.-.-+-.|+.||.-.+.+..|  ++..|.++. ++..
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlqK  165 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQK  165 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence            9999998999999521       235667888888865  445556667799999999999864  455565443 3446


Q ss_pred             HccCcchHHHHHhc--------CchHHHHHHHhcCChHHH----HHHHHHHhcCCCchhhhhhhHH
Q psy12638        179 LALNSRNAELMLKN--------RQLELLMIQAFTQKNILL----LKVIRNMSIHSNVKHYFVDYIG  232 (334)
Q Consensus       179 Ls~~~~n~~~i~~~--------~gl~~Lv~~l~~~~d~~~----~k~l~nLa~~~~~~~~f~~~i~  232 (334)
                      +-.|+..-.-+++.        ..+..+|..+.+...+=+    +++--.||.|+..+..+..+++
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~~LP  231 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQCLP  231 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHHHS-
T ss_pred             HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHHhCc
Confidence            66676666555542        355566655555555533    3344467777665554333333

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG3678|consensus

Probab=94.78  E-value=0.34  Score=48.23  Aligned_cols=172  Identities=13%  Similarity=0.182  Sum_probs=102.6

Q ss_pred             hHHHHHHhcCChHHHHHhccCCch----HHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHH
Q psy12638        103 NLREKIIKIGFLPKLVSLLEEGKH----QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN  178 (334)
Q Consensus       103 ~~r~~iv~~g~Ip~Lv~lL~~~~~----~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~n  178 (334)
                      ..+..|...|++..|++++..|+.    +--|.++|-++-.. +||..+++-| ...++.+-......+.....+.++-|
T Consensus       171 ~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~  248 (832)
T KOG3678|consen  171 GLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH  248 (832)
T ss_pred             hhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence            567788889999999999987753    55577877776554 4888888765 44444443333344554555677778


Q ss_pred             HccC-cchHHHHHhcCchHHHHHHHhcCChHHHHH----HHHHHhcCCCch-hh-h-----hhhHHHHHHHhhcCCccch
Q psy12638        179 LALN-SRNAELMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIHSNVK-HY-F-----VDYIGDIANCVQKEKDENI  246 (334)
Q Consensus       179 Ls~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k----~l~nLa~~~~~~-~~-f-----~~~i~~L~~~l~~~~~~~~  246 (334)
                      +-.+ .+.++.+++.||+...+-.... .||-+++    .+.|++-|.... |. +     .+|+=+|.    .++ +++
T Consensus       249 mFKHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA----~sk-Del  322 (832)
T KOG3678|consen  249 MFKHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA----FSK-DEL  322 (832)
T ss_pred             HhhhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh----cch-HHH
Confidence            8544 4568889999999988766444 4554433    477888776432 11 1     22222221    111 111


Q ss_pred             hHHhhcHHHHHHHHHHhcCCcchHHHhhhCC---chHHHHHHhc
Q psy12638        247 KLECLGTLEVINFIGTAASDPISAEHFCKNS---TVDLLINLLK  287 (334)
Q Consensus       247 ~ve~Lg~leav~~lg~la~~~~~~~~l~~~g---~I~~Lv~LL~  287 (334)
                      +     -+.|+.++++++.+.+....+.+.|   +|++++.-+.
T Consensus       323 ~-----R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~D  361 (832)
T KOG3678|consen  323 L-----RLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLD  361 (832)
T ss_pred             H-----HHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccC
Confidence            1     1146666677776666555555554   4455554444

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=94.50  E-value=0.04  Score=38.09  Aligned_cols=54  Identities=19%  Similarity=0.097  Sum_probs=45.4

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhh
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNL   98 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NL   98 (334)
                      ..|+.|...|..++........-....+++.|..+|.++++.++..|..+|.||
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            347788889988876666666667788999999999999999999999999886

...

>KOG2171|consensus

Probab=94.49  E-value=3.6  Score=45.08  Aligned_cols=273  Identities=12%  Similarity=0.139  Sum_probs=143.5

Q ss_pred             cCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChh-HHHHHHh-cCChHHHHHh
Q psy12638         43 VPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIK-IGFLPKLVSL  120 (334)
Q Consensus        43 ~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~-~r~~iv~-~g~Ip~Lv~l  120 (334)
                      -++-|+-|+..|..+...-.|...=.=..+.+.+.+-+..+...++-.|++++.-.+...+ ++....+ ...+|+++..
T Consensus       131 ~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~v  210 (1075)
T KOG2171|consen  131 NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNV  210 (1075)
T ss_pred             CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHH
Confidence            3456677788888777654444332112233444455566666699999999988886543 3333332 5788988887


Q ss_pred             cc----CC--chHHHHHHHHHHccCCh--hhhhHhhccCcHHHHHHHhccCC-CCchHHHHHHHHHHHccCcchHHHHHh
Q psy12638        121 LE----EG--KHQKIILQLLYHLSIED--RVKAMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALCINLALNSRNAELMLK  191 (334)
Q Consensus       121 L~----~~--~~~~~al~~L~~LS~~~--~~r~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nLs~~~~n~~~i~~  191 (334)
                      +.    .+  +.-..++..|-.+...+  -.|..+..  .|..-.++..+.. ++..+..++.+++-++   +++..+++
T Consensus       211 l~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~---e~Ap~~~k  285 (1075)
T KOG2171|consen  211 LQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLS---EYAPAMCK  285 (1075)
T ss_pred             hHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHH---HhhHHHhh
Confidence            73    22  22344566665554332  22333322  3333344443322 2233333333444333   33555554


Q ss_pred             c--CchHHHHHHHhc----CC-h------------------HHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccch
Q psy12638        192 N--RQLELLMIQAFT----QK-N------------------ILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENI  246 (334)
Q Consensus       192 ~--~gl~~Lv~~l~~----~~-d------------------~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~  246 (334)
                      -  ...++|+-.+..    .. |                  -....++-.+|.+-+.++.+....+.+-.++.+.+...-
T Consensus       286 ~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R  365 (1075)
T KOG2171|consen  286 KLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKER  365 (1075)
T ss_pred             hchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHH
Confidence            2  233333333222    00 0                  123556667777766666655555555555554443222


Q ss_pred             hHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCc--hHHHHHHHHHHHHHcCch-hhHHHhhcCCcH
Q psy12638        247 KLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDD--EIVLQILYVFYQICRHAS-CQNYLIKETDAP  323 (334)
Q Consensus       247 ~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dd--e~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~  323 (334)
                      .       ++.+++|.++.  .|.+.+..  -+|.+++..-.+-.|.  .+...++.|+|+|+.+=. .-+.-. .+.+|
T Consensus       366 ~-------AaL~Als~i~E--Gc~~~m~~--~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~  433 (1075)
T KOG2171|consen  366 H-------AALLALSVIAE--GCSDVMIG--NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLP  433 (1075)
T ss_pred             H-------HHHHHHHHHHc--ccHHHHHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhcc
Confidence            2       35678888874  34455544  3566655544444444  455566999999986544 332233 33566


Q ss_pred             HHHHHhhhc
Q psy12638        324 AYMIDLLND  332 (334)
Q Consensus       324 ~~Li~LL~d  332 (334)
                      ..|+..|.|
T Consensus       434 ~aL~~~ld~  442 (1075)
T KOG2171|consen  434 PALIALLDS  442 (1075)
T ss_pred             HHHHHHhcc
Confidence            577776655

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.84  E-value=0.62  Score=43.10  Aligned_cols=147  Identities=12%  Similarity=0.119  Sum_probs=111.5

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCC-----hhHHHHHHHHHHhhcC--ChhHHHHHHhcCChHHHHHhc
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIED-----SNLQSSTLKLLFNLSF--DTNLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~-----~~l~~~al~~L~NLS~--d~~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      .|+..|+-.+.+++.|....++.+.-.|..+|...+     +.++-.++..++-|..  |+++-.-+.+.++||.-.+.+
T Consensus        69 naLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m  148 (262)
T PF04078_consen   69 NALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM  148 (262)
T ss_dssp             HHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence            678888999999999999999999999999986543     3678889999999988  468888888999999999999


Q ss_pred             c--CCchHHHHHHHHHHccCChhhhhHhhccC--------cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh
Q psy12638        122 E--EGKHQKIILQLLYHLSIEDRVKAMFAYTN--------CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK  191 (334)
Q Consensus       122 ~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~--------~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~  191 (334)
                      .  ++-.+-.|..+++.+=.||.+-.-+.+|.        .+..++.-+...++..+-+..+..-.-||.+++.++++..
T Consensus       149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  149 EFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4  55567789999999988888877776653        3445555555556667766666666688999999998885


Q ss_pred             cCchHH
Q psy12638        192 NRQLEL  197 (334)
Q Consensus       192 ~~gl~~  197 (334)
                        ++|.
T Consensus       229 --~LP~  232 (262)
T PF04078_consen  229 --CLPD  232 (262)
T ss_dssp             --HS-G
T ss_pred             --hCcH
Confidence              4554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG3678|consensus

Probab=93.81  E-value=1.4  Score=43.98  Aligned_cols=197  Identities=12%  Similarity=0.080  Sum_probs=122.4

Q ss_pred             cCCcceee--cccCc----chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhcc-CCChhHHHHHHHHHHhhcCCh-hH
Q psy12638         33 RGNCNCYG--LIVPK----SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILM-IEDSNLQSSTLKLLFNLSFDT-NL  104 (334)
Q Consensus        33 r~~~~~~~--~~~~~----~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~-~~~~~l~~~al~~L~NLS~d~-~~  104 (334)
                      ++++++++  ...|+    -|-+|.+.|+..- ..+|++.+...| ...++.+.+ .+..++....+.+|.||=.+. +.
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet  256 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET  256 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence            55666554  22332    2558888887753 378999999887 555555443 345588999999999999884 89


Q ss_pred             HHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHH-HHHHHHHH
Q psy12638        105 REKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNV-LVALCINL  179 (334)
Q Consensus       105 r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~-~~~ll~nL  179 (334)
                      +..++..|+|..++--.+  +|.+...|+-.|.|...+  .+.+..|.+..+-++|.-+-.+ .++-..-. +++++ -|
T Consensus       257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s-kDel~R~~AClAV~-vl  334 (832)
T KOG3678|consen  257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS-KDELLRLHACLAVA-VL  334 (832)
T ss_pred             HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc-hHHHHHHHHHHHHh-hh
Confidence            999999999998877774  566544444458898876  4678888888888888877654 33322221 12222 34


Q ss_pred             ccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh-hhhhHHHHHHHhh
Q psy12638        180 ALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY-FVDYIGDIANCVQ  239 (334)
Q Consensus       180 s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~-f~~~i~~L~~~l~  239 (334)
                      +.+.+.-..+.++ |--.||+.+...-||--+  .|--+.   ..|- -.+++..|+-++.
T Consensus       335 at~KE~E~~VrkS-~TlaLVEPlva~~DP~~F--ARD~hd---~aQG~~~d~LqRLvPlLd  389 (832)
T KOG3678|consen  335 ATNKEVEREVRKS-GTLALVEPLVASLDPGRF--ARDAHD---YAQGRGPDDLQRLVPLLD  389 (832)
T ss_pred             hhhhhhhHHHhhc-cchhhhhhhhhccCcchh--hhhhhh---hhccCChHHHHHhhhhhh
Confidence            5565555555555 444455555544444211  111110   1111 2467777777664

>KOG3036|consensus

Probab=93.76  E-value=1.2  Score=41.05  Aligned_cols=143  Identities=10%  Similarity=0.062  Sum_probs=112.3

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhcc-----CCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhc
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILM-----IEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~-----~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      .|+..|+-.+.+++.|....++-+--.|..+|.     ++.+-++-.++..+.-|..+  +++-..+...++||..++.+
T Consensus        98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim  177 (293)
T KOG3036|consen   98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM  177 (293)
T ss_pred             HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence            788888999999999999999988777777773     35667899999999999975  48888899999999999999


Q ss_pred             c--CCchHHHHHHHHHHccCChhhhhHhhcc--------CcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh
Q psy12638        122 E--EGKHQKIILQLLYHLSIEDRVKAMFAYT--------NCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK  191 (334)
Q Consensus       122 ~--~~~~~~~al~~L~~LS~~~~~r~~i~~t--------~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~  191 (334)
                      .  ++..+-.|+.++-.+=.||.+-.-|.+|        ..+..++.-+.+.+...+-+.+++...+|+-+++-+.+...
T Consensus       178 e~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~  257 (293)
T KOG3036|consen  178 ESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRS  257 (293)
T ss_pred             hcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            4  5566788888888887777665555443        13445555555667777778888888899999988887764

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=0.33  Score=49.04  Aligned_cols=139  Identities=17%  Similarity=0.165  Sum_probs=98.9

Q ss_pred             HHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhccCCc--
Q psy12638         51 RQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLEEGK--  125 (334)
Q Consensus        51 ~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~~~~--  125 (334)
                      .....++-+ +..=+..+.+.|+|..|++++.+++..++.++.-.|.-|.++.  +.+-+....-+..+++++.++|.  
T Consensus       452 t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~  531 (743)
T COG5369         452 TIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFK  531 (743)
T ss_pred             hhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccc
Confidence            444444443 5667888999999999999999999999999999999999975  44667778888899999999985  


Q ss_pred             hHHHHHHHHHHccCC----hhhhhHhhccCcHH----HHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHH
Q psy12638        126 HQKIILQLLYHLSIE----DRVKAMFAYTNCMS----LLMNMLLVEQDDETDNVLVALCINLALNSRNAELML  190 (334)
Q Consensus       126 ~~~~al~~L~~LS~~----~~~r~~i~~t~~i~----~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~  190 (334)
                      .|+.++.+|.|+.++    ++.+..+-+..-..    .|++.+.....-+. .+-.-.++|++.++++...++
T Consensus       532 vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i-~~~~yilv~~aa~d~~l~~~V  603 (743)
T COG5369         532 VQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI-LEGCYILVRNAACDDTLDYIV  603 (743)
T ss_pred             cHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh-hhhHHHHHHHHhccchHHHHH
Confidence            588999999999875    34455554443333    34444443222222 223456677777777655555

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=93.25  E-value=5.8  Score=43.39  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--  124 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--  124 (334)
                      |..|+..|.++...         ....+.|...|.++++.++..|+..|..+..           +-.+.+++.|+++  
T Consensus       669 R~~Aa~aL~~l~~~---------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~  728 (897)
T PRK13800        669 RRAAAEGLRELVEV---------LPPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDH  728 (897)
T ss_pred             HHHHHHHHHHHHhc---------cCchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCH
Confidence            44666777665211         1123567778888888888888888877642           1123445555433  


Q ss_pred             chHHHHHHHHHHc
Q psy12638        125 KHQKIILQLLYHL  137 (334)
Q Consensus       125 ~~~~~al~~L~~L  137 (334)
                      ..|..|+..|..+
T Consensus       729 ~VR~~Av~aL~~~  741 (897)
T PRK13800        729 RVRIEAVRALVSV  741 (897)
T ss_pred             HHHHHHHHHHhcc
Confidence            3455555555543

>KOG4464|consensus

Probab=93.03  E-value=0.72  Score=45.21  Aligned_cols=199  Identities=15%  Similarity=0.144  Sum_probs=114.0

Q ss_pred             CChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhcc------CC-chHHHHHHHHHHccCC-hhhhhHhh-ccCc
Q psy12638         83 EDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLE------EG-KHQKIILQLLYHLSIE-DRVKAMFA-YTNC  152 (334)
Q Consensus        83 ~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~------~~-~~~~~al~~L~~LS~~-~~~r~~i~-~t~~  152 (334)
                      .+.++.-.|+++|+|+.|+. ..|....+.....++.+.+.      .| ..+..-+++|+-|+.- ...|..+. +.+|
T Consensus       109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G  188 (532)
T KOG4464|consen  109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG  188 (532)
T ss_pred             cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence            34688889999999999985 88888889988888888772      12 3455667878877654 46677664 4689


Q ss_pred             HHHHHHHhccCCC--------C------chHHHHHHHHHHHccCcchHHHHHhc-------CchHHHHHHHhcCC-----
Q psy12638        153 MSLLMNMLLVEQD--------D------ETDNVLVALCINLALNSRNAELMLKN-------RQLELLMIQAFTQK-----  206 (334)
Q Consensus       153 i~~Lv~LL~~~~~--------~------~~~~~~~~ll~nLs~~~~n~~~i~~~-------~gl~~Lv~~l~~~~-----  206 (334)
                      ++.+.+.+...-+        +      +...|++.++.|++.++.-....-+.       +.+...+..+ ...     
T Consensus       189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~v-T~~~~~~e  267 (532)
T KOG4464|consen  189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIV-TLRDSTEE  267 (532)
T ss_pred             cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhc-cccchHHH
Confidence            9999998853211        1      11125667778987665432211110       1111111111 111     


Q ss_pred             ---------hHHHHHHHHHHhcCCCc---hhhhh-------hhHHHHHHHhhcC-Cc----cchhHHhhcHHHHHHHHHH
Q psy12638        207 ---------NILLLKVIRNMSIHSNV---KHYFV-------DYIGDIANCVQKE-KD----ENIKLECLGTLEVINFIGT  262 (334)
Q Consensus       207 ---------d~~~~k~l~nLa~~~~~---~~~f~-------~~i~~L~~~l~~~-~~----~~~~ve~Lg~leav~~lg~  262 (334)
                               +.+..+++-.++...+.   .|.|.       +.|-.++.....+ +.    .+.+-..+      ..+..
T Consensus       268 lhshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvl------sVL~~  341 (532)
T KOG4464|consen  268 LHSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVL------SVLTE  341 (532)
T ss_pred             HhhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHH------HHHHH
Confidence                     01224445555554432   23342       2333333222111 11    12322333      34588


Q ss_pred             hcCCcchHHHhhhCCchHHHHHHhcc
Q psy12638        263 AASDPISAEHFCKNSTVDLLINLLKE  288 (334)
Q Consensus       263 la~~~~~~~~l~~~g~I~~Lv~LL~~  288 (334)
                      +|+++.....+.+..++|||.+.-+-
T Consensus       342 car~~R~~Rkylr~qVLPPLrDV~~R  367 (532)
T KOG4464|consen  342 CARSHRVMRKYLRQQVLPPLRDVSQR  367 (532)
T ss_pred             HHhhhHHHHHHHHHhcCCchhhhhcC
Confidence            88887777777777899999987753

>KOG1824|consensus

Probab=92.09  E-value=1.3  Score=47.68  Aligned_cols=231  Identities=13%  Similarity=0.137  Sum_probs=109.4

Q ss_pred             CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH-Hhcc-CCchHHH-HHHHHHHccCChhhhhH
Q psy12638         70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLV-SLLE-EGKHQKI-ILQLLYHLSIEDRVKAM  146 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv-~lL~-~~~~~~~-al~~L~~LS~~~~~r~~  146 (334)
                      ..++..++++|+..+.++|+.|+++|.-|+.-  +++.=++. .+..|. .++. .+..+.. ++++..-.+.-......
T Consensus        46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK--vke~~le~-~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~  122 (1233)
T KOG1824|consen   46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK--VKEDQLET-IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS  122 (1233)
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh--chHHHHHH-HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc
Confidence            45788899999999999999999999999943  22221111 112222 2222 2222222 34444444444433333


Q ss_pred             hhccCcHHH----HHHHhcc-CCCCchHHHHHHHHHHH-ccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcC
Q psy12638        147 FAYTNCMSL----LMNMLLV-EQDDETDNVLVALCINL-ALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIH  220 (334)
Q Consensus       147 i~~t~~i~~----Lv~LL~~-~~~~~~~~~~~~ll~nL-s~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~  220 (334)
                      +.-+...+.    +..-+.. ++...+..++.-++... +.-..-...+.. +.+.-++..+...+..+--|.+..++.-
T Consensus       123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~-~il~~l~~ql~s~R~aVrKkai~~l~~l  201 (1233)
T KOG1824|consen  123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHL-SILKCLLPQLQSPRLAVRKKAITALGHL  201 (1233)
T ss_pred             ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHH-HHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence            333333333    3333321 11222222222222111 111111111111 2333333333333444444444444433


Q ss_pred             CC--chhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcccc-CCchHHH
Q psy12638        221 SN--VKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ-EDDEIVL  297 (334)
Q Consensus       221 ~~--~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~-~dde~vl  297 (334)
                      ..  ++-.|.+.+..|.+-+..... .   +.+.+  -+.++|++++....+.-=.-..++|.+.+-.+.-+ +|||.--
T Consensus       202 a~~~~~~ly~~li~~Ll~~L~~~~q-~---~~~rt--~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE  275 (1233)
T KOG1824|consen  202 ASSCNRDLYVELIEHLLKGLSNRTQ-M---SATRT--YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE  275 (1233)
T ss_pred             HHhcCHHHHHHHHHHHHhccCCCCc-h---HHHHH--HHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence            22  223367778888777755421 1   11111  36677888765442221122357888888886544 5555555


Q ss_pred             HHHHHHHHHHcCc
Q psy12638        298 QILYVFYQICRHA  310 (334)
Q Consensus       298 qi~~~l~~l~~~~  310 (334)
                      -.+-+|+.++...
T Consensus       276 ~~lQale~fl~rc  288 (1233)
T KOG1824|consen  276 YCLQALESFLRRC  288 (1233)
T ss_pred             HHHHHHHHHHHhC
Confidence            5577777776443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=91.98  E-value=0.41  Score=37.63  Aligned_cols=85  Identities=14%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             HHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHh--cCChHHHHHhccCCch-
Q psy12638         50 GRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK--IGFLPKLVSLLEEGKH-  126 (334)
Q Consensus        50 A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~--~g~Ip~Lv~lL~~~~~-  126 (334)
                      ++-.|...++.-.....-.-.-++++++..+..++..++..|..+|+|++..  .|.++..  ..+++.|.+++.+++. 
T Consensus         6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~--~~~~~l~~f~~IF~~L~kl~~D~d~~   83 (97)
T PF12755_consen    6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV--ARGEILPYFNEIFDALCKLSADPDEN   83 (97)
T ss_pred             HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCchh
Confidence            3444444444333334444456899999999999999999999999999964  3445542  5566667777765542 


Q ss_pred             HHHHHHHHHH
Q psy12638        127 QKIILQLLYH  136 (334)
Q Consensus       127 ~~~al~~L~~  136 (334)
                      -..++.+|-+
T Consensus        84 Vr~~a~~Ld~   93 (97)
T PF12755_consen   84 VRSAAELLDR   93 (97)
T ss_pred             HHHHHHHHHH
Confidence            2234444443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=91.76  E-value=3.6  Score=42.23  Aligned_cols=67  Identities=12%  Similarity=0.112  Sum_probs=47.0

Q ss_pred             chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCCh
Q psy12638         73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIED  141 (334)
Q Consensus        73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~  141 (334)
                      .|.|-.+++++-+-+.-.++++.+.+|.-. +-.+.+. ..|..|-.+|+++.  .|..|+++|-.||+..
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~  334 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY  334 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence            455556777777888888889999888633 2333332 24566777777664  5888999999998754

>KOG0212|consensus

Probab=91.47  E-value=6.5  Score=40.24  Aligned_cols=110  Identities=21%  Similarity=0.284  Sum_probs=73.2

Q ss_pred             ccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhc----------------------CChh------------
Q psy12638         58 SVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLS----------------------FDTN------------  103 (334)
Q Consensus        58 Si~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS----------------------~d~~------------  103 (334)
                      ++--.+++...-.++++|.+.-+...+.+++..|...|+|.+                      -|++            
T Consensus        71 ~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdR  150 (675)
T KOG0212|consen   71 AIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDR  150 (675)
T ss_pred             HHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHH
Confidence            333344554567788999999888888888887777777765                      2211            


Q ss_pred             HHHHHHhcCC----hHHHHHhcc------CCchHHHHHHHHHHccCChhhhhHhhccC-cHHHHHHHhccCCCCchH
Q psy12638        104 LREKIIKIGF----LPKLVSLLE------EGKHQKIILQLLYHLSIEDRVKAMFAYTN-CMSLLMNMLLVEQDDETD  169 (334)
Q Consensus       104 ~r~~iv~~g~----Ip~Lv~lL~------~~~~~~~al~~L~~LS~~~~~r~~i~~t~-~i~~Lv~LL~~~~~~~~~  169 (334)
                      ..+.||-...    +|.++++|+      +|..|...+.-|+.|=.-+ .+++|.+.. -.+-|..+|.. +.+++.
T Consensus       151 LikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD-~s~eVr  225 (675)
T KOG0212|consen  151 LIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSD-SSDEVR  225 (675)
T ss_pred             HHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcC-CcHHHH
Confidence            2344443333    677777773      5667887888888885554 578888865 56778889863 455544

>KOG2023|consensus

Probab=90.78  E-value=5.5  Score=41.59  Aligned_cols=163  Identities=13%  Similarity=0.216  Sum_probs=83.6

Q ss_pred             chHHHhhccCCChhHHHHHHHHHHhhcCChh-H-HHHHHh---cCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhh
Q psy12638         73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-L-REKIIK---IGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKA  145 (334)
Q Consensus        73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~-~-r~~iv~---~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~  145 (334)
                      +|.|..+|.+++....+-|+.+|-..+.|.. . -...-.   .-.||++..+.+  +|..|..|++-+-..=... +..
T Consensus       130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-~qa  208 (885)
T KOG2023|consen  130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-TQA  208 (885)
T ss_pred             HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-cHH
Confidence            4568889999999999999999999998852 2 111111   236899999996  4566766665333222211 222


Q ss_pred             HhhccC-cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhc-CchHHHHHHHhcCChHHHHHH---HHHHhcC
Q psy12638        146 MFAYTN-CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKN-RQLELLMIQAFTQKNILLLKV---IRNMSIH  220 (334)
Q Consensus       146 ~i~~t~-~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~-~gl~~Lv~~l~~~~d~~~~k~---l~nLa~~  220 (334)
                      .+..-+ -++.+..+- +.+++++++.+-..++-|. +-+--..+-.- +.++-.+.+....++.+++..   -..+|..
T Consensus       209 l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Ll-evr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  209 LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLL-EVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ  286 (885)
T ss_pred             HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHH-HhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence            222222 233444443 4566666665444333331 11111111111 233333344333344444432   4456665


Q ss_pred             CCchhhhhhhHHHHHHHh
Q psy12638        221 SNVKHYFVDYIGDIANCV  238 (334)
Q Consensus       221 ~~~~~~f~~~i~~L~~~l  238 (334)
                      +-.+....+++.+|+-++
T Consensus       287 pi~~~~L~p~l~kliPvL  304 (885)
T KOG2023|consen  287 PICKEVLQPYLDKLIPVL  304 (885)
T ss_pred             cCcHHHHHHHHHHHHHHH
Confidence            533333445555555443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=90.56  E-value=0.41  Score=35.79  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=49.3

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc-
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK-  125 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~-  125 (334)
                      |..|+..|.++-          ...+++.|.+++.+++..++..|+..|..+.          ...++|.|.+++.++. 
T Consensus        17 r~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~~~~~~~L~~~l~~~~~   76 (88)
T PF13646_consen   17 RAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------DPEAIPALIKLLQDDDD   76 (88)
T ss_dssp             HHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------HHHTHHHHHHHHTC-SS
T ss_pred             HHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHcCCCc
Confidence            445666666431          1256999999999999999999999999883          3448999999996432 


Q ss_pred             --hHHHHHHHH
Q psy12638        126 --HQKIILQLL  134 (334)
Q Consensus       126 --~~~~al~~L  134 (334)
                        .+..|+..|
T Consensus        77 ~~vr~~a~~aL   87 (88)
T PF13646_consen   77 EVVREAAAEAL   87 (88)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence              355566544

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=90.54  E-value=1.2  Score=41.26  Aligned_cols=74  Identities=19%  Similarity=0.292  Sum_probs=55.4

Q ss_pred             hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHH
Q psy12638        229 DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQIC  307 (334)
Q Consensus       229 ~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~  307 (334)
                      .++..+++++.........+.+|.++     +..+..+|.+...|.+.+++..++.+++.++.++++.+.++..++-.+
T Consensus       133 ~~m~lll~LL~~~~~~~i~~a~L~tL-----v~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  133 QNMELLLDLLSPSNPPAIQSACLDTL-----VCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             hhHHHHHHHhccCCCchHHHHHHHHH-----HHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence            45555666664333345555554444     455667888889999999999999999999999999999988877776

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1059|consensus

Probab=90.22  E-value=3.3  Score=43.42  Aligned_cols=126  Identities=20%  Similarity=0.274  Sum_probs=78.4

Q ss_pred             HHHHHhccC--CchHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHH
Q psy12638        115 PKLVSLLEE--GKHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELM  189 (334)
Q Consensus       115 p~Lv~lL~~--~~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i  189 (334)
                      +-++-+|++  |=.|..|+.+||.+..-  +..|      .|+|.|++=|. .+++.++..+..+.+-|| .+|+|.-.+
T Consensus       147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~L  219 (877)
T KOG1059|consen  147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQL  219 (877)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCcccccc
Confidence            344555543  33577788888877542  2222      37799999997 478888887777777774 677776544


Q ss_pred             HhcCchHHHHHHHhcCChHH-HHHH---HHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHH
Q psy12638        190 LKNRQLELLMIQAFTQKNIL-LLKV---IRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTL  254 (334)
Q Consensus       190 ~~~~gl~~Lv~~l~~~~d~~-~~k~---l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~l  254 (334)
                      +     |.+.+++.+++..| ++|+   ..+|+--++-.  -.+.+++|..++.+-..-.++.||+.+.
T Consensus       220 A-----P~ffkllttSsNNWmLIKiiKLF~aLtplEPRL--gKKLieplt~li~sT~AmSLlYECvNTV  281 (877)
T KOG1059|consen  220 A-----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL--GKKLIEPITELMESTVAMSLLYECVNTV  281 (877)
T ss_pred             c-----HHHHHHHhccCCCeehHHHHHHHhhccccCchh--hhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            3     45666666666665 4454   44555444321  2356777777765444456777887665

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=90.22  E-value=2.5  Score=42.45  Aligned_cols=76  Identities=13%  Similarity=0.033  Sum_probs=57.2

Q ss_pred             HHHHHHHccCChhhhhHhhccCcHHHHHHHh---------ccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHH
Q psy12638        130 ILQLLYHLSIEDRVKAMFAYTNCMSLLMNML---------LVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLM  199 (334)
Q Consensus       130 al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL---------~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv  199 (334)
                      |+..|.-||.|..+-..+...+++..|.++-         ...++..+..+++..+.|+-+. +..++.+++.|+.+.++
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            3556777888888888887777888887776         4445667777888999998555 45577777888889888


Q ss_pred             HHHhcC
Q psy12638        200 IQAFTQ  205 (334)
Q Consensus       200 ~~l~~~  205 (334)
                      +++.+.
T Consensus        81 ~~Lk~~   86 (446)
T PF10165_consen   81 ERLKNY   86 (446)
T ss_pred             HHHHcc
Confidence            887764

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1060|consensus

Probab=90.09  E-value=2.9  Score=44.28  Aligned_cols=166  Identities=17%  Similarity=0.284  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHH-Hh
Q psy12638        126 HQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQ-AF  203 (334)
Q Consensus       126 ~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~-l~  203 (334)
                      .--.++.++|+|+--.+.      +..+.+|+.+|.+..  .++.   .++.|.+.- .+...      -|.|.++- -+
T Consensus       303 VVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~--~vqy---vvL~nIa~~s~~~~~------lF~P~lKsFfv  365 (968)
T KOG1060|consen  303 VVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNR--EVQY---VVLQNIATISIKRPT------LFEPHLKSFFV  365 (968)
T ss_pred             HHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCC--cchh---hhHHHHHHHHhcchh------hhhhhhhceEe
Confidence            344577888888765422      224678999997533  3322   244454322 22222      23333322 23


Q ss_pred             cCChHHH-----HHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhCC
Q psy12638        204 TQKNILL-----LKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKNS  277 (334)
Q Consensus       204 ~~~d~~~-----~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~g  277 (334)
                      .+.||..     +.++.||+....-.+    .+..+-.-+...+. ++ +.     .+|.+||.+|.. ..+...     
T Consensus       366 ~ssDp~~vk~lKleiLs~La~esni~~----ILrE~q~YI~s~d~-~f-aa-----~aV~AiGrCA~~~~sv~~t-----  429 (968)
T KOG1060|consen  366 RSSDPTQVKILKLEILSNLANESNISE----ILRELQTYIKSSDR-SF-AA-----AAVKAIGRCASRIGSVTDT-----  429 (968)
T ss_pred             ecCCHHHHHHHHHHHHHHHhhhccHHH----HHHHHHHHHhcCch-hH-HH-----HHHHHHHHHHHhhCchhhH-----
Confidence            4567643     445778875432111    12222223333332 22 22     278899999884 333333     


Q ss_pred             chHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhh
Q psy12638        278 TVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN  331 (334)
Q Consensus       278 ~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~  331 (334)
                      ...+|+.+++++  |.-++.+.+.++-.|...++.+.     ..++.+|-+||.
T Consensus       430 CL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~~h-----~~ii~~La~lld  476 (968)
T KOG1060|consen  430 CLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPAEH-----LEILFQLARLLD  476 (968)
T ss_pred             HHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChHHH-----HHHHHHHHHHhh
Confidence            678999999854  66888899999999986666553     124446666653

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=89.95  E-value=21  Score=35.02  Aligned_cols=163  Identities=14%  Similarity=0.162  Sum_probs=110.9

Q ss_pred             chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc----CCchHHHHHHHHH
Q psy12638         60 YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE----EGKHQKIILQLLY  135 (334)
Q Consensus        60 ~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~----~~~~~~~al~~L~  135 (334)
                      +++-|..+.-.-..+.+..++=+++.+++..+.+++--+-.|.+.-..+.+.++=--++..|.    ++..++.|+++..
T Consensus        14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR   93 (371)
T PF14664_consen   14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIR   93 (371)
T ss_pred             CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHH
Confidence            454555555555666666555555699999999999999999999999999986666667773    2345778999877


Q ss_pred             HccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHH---HHH
Q psy12638        136 HLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNIL---LLK  212 (334)
Q Consensus       136 ~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k  212 (334)
                      .+-..+.+...| ..+.+..++.+... +++.....+++.+.=++.  .+-+.+++.||+..|++.+.++.-..   ++.
T Consensus        94 ~~l~~~~~~~~~-~~~vvralvaiae~-~~D~lr~~cletL~El~l--~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~  169 (371)
T PF14664_consen   94 AFLEIKKGPKEI-PRGVVRALVAIAEH-EDDRLRRICLETLCELAL--LNPELVAECGGIRVLLRALIDGSFSISESLLD  169 (371)
T ss_pred             HHHHhcCCcccC-CHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHh--hCHHHHHHcCCHHHHHHHHHhccHhHHHHHHH
Confidence            665543332223 33456778888865 566666655555544432  35677889999999999999865432   344


Q ss_pred             HHHHHhcCCCchhh
Q psy12638        213 VIRNMSIHSNVKHY  226 (334)
Q Consensus       213 ~l~nLa~~~~~~~~  226 (334)
                      ++-.+-.++..++.
T Consensus       170 ~lL~lLd~p~tR~y  183 (371)
T PF14664_consen  170 TLLYLLDSPRTRKY  183 (371)
T ss_pred             HHHHHhCCcchhhh
Confidence            55566666666664

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=89.83  E-value=3  Score=36.94  Aligned_cols=81  Identities=14%  Similarity=0.055  Sum_probs=59.2

Q ss_pred             hCCcchHHHhhccC------CChhHHHHHHHHHHhhcCChhHHHHHHhc--CC--hHHHHHhcc--CCchHHHHHHHHHH
Q psy12638         69 NLNLIEKLPRILMI------EDSNLQSSTLKLLFNLSFDTNLREKIIKI--GF--LPKLVSLLE--EGKHQKIILQLLYH  136 (334)
Q Consensus        69 ~~g~I~~Lv~LL~~------~~~~l~~~al~~L~NLS~d~~~r~~iv~~--g~--Ip~Lv~lL~--~~~~~~~al~~L~~  136 (334)
                      +...+..|+..+..      ....-......+|.|+|..++.|.-+.+.  +.  |.+|+.++.  +..-|.-+++++.|
T Consensus        50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN  129 (192)
T PF04063_consen   50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN  129 (192)
T ss_pred             hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            33466777777655      22345667778999999999999999963  44  677777775  34457779999999


Q ss_pred             ccCChhhhhHhhc
Q psy12638        137 LSIEDRVKAMFAY  149 (334)
Q Consensus       137 LS~~~~~r~~i~~  149 (334)
                      +|++.+.-..+-.
T Consensus       130 ccFd~~~H~~LL~  142 (192)
T PF04063_consen  130 CCFDTDSHEWLLS  142 (192)
T ss_pred             hhccHhHHHHhcC
Confidence            9999866555544

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3036|consensus

Probab=89.81  E-value=6.8  Score=36.17  Aligned_cols=137  Identities=15%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC-----C--chHHHHHHHHHHccCC--hhhhhHhhccCcH
Q psy12638         83 EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE-----G--KHQKIILQLLYHLSIE--DRVKAMFAYTNCM  153 (334)
Q Consensus        83 ~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~-----~--~~~~~al~~L~~LS~~--~~~r~~i~~t~~i  153 (334)
                      .+..-.++|+.+|--++.+++.|..++++.+=-.|-++|..     +  -.|-.++++...|-..  .+.-...-.|+.|
T Consensus        91 ~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   91 AQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            34567899999999999999999999999875577788842     1  2466788888888553  3444444668999


Q ss_pred             HHHHHHhccCCCCchHHHHHHH-HHHHccCcchHHHHHhc--------CchHHHHHHHhcCChHHHHH----HHHHHhcC
Q psy12638        154 SLLMNMLLVEQDDETDNVLVAL-CINLALNSRNAELMLKN--------RQLELLMIQAFTQKNILLLK----VIRNMSIH  220 (334)
Q Consensus       154 ~~Lv~LL~~~~~~~~~~~~~~l-l~nLs~~~~n~~~i~~~--------~gl~~Lv~~l~~~~d~~~~k----~l~nLa~~  220 (334)
                      |..++.+..|+  +.-+.++.. +-..-.|+..-.-+++.        ..+..++..+.+..++-++|    +--+|+.+
T Consensus       171 PlCLrime~GS--elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  171 PLCLRIMESGS--ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHHHHhccc--HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            99999998753  444444333 33456677666666642        24455555555555554433    34456655


Q ss_pred             C
Q psy12638        221 S  221 (334)
Q Consensus       221 ~  221 (334)
                      +
T Consensus       249 p  249 (293)
T KOG3036|consen  249 P  249 (293)
T ss_pred             H
Confidence            4

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=89.06  E-value=0.67  Score=31.78  Aligned_cols=52  Identities=17%  Similarity=0.092  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHc
Q psy12638         86 NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHL  137 (334)
Q Consensus        86 ~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~L  137 (334)
                      .++..|+.+|.++++.......-....++|.|+.+|+++  ..|..|+..|.+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578899999999998754444446678999999999644  4677777777654

...

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=89.01  E-value=0.33  Score=29.52  Aligned_cols=29  Identities=14%  Similarity=0.136  Sum_probs=25.3

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcC
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSF  100 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~  100 (334)
                      ++|.+.+++.+++++++..|+.+|.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47889999999999999999999998874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=88.92  E-value=1.8  Score=34.41  Aligned_cols=66  Identities=14%  Similarity=0.050  Sum_probs=55.1

Q ss_pred             hhHHHHHHHhccc-chhhHHHhHhCCcchHHHhh--ccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcC
Q psy12638         47 KREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRI--LMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIG  112 (334)
Q Consensus        47 ~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~L--L~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g  112 (334)
                      |++-++.+.+|+- .+++.+.+.+.|.||.++..  .+..++-+++.|+-++-||... ++++..|.+..
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~   72 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE   72 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence            6677788888884 68899999999999999874  3556778999999999999987 58888887654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.89  E-value=0.83  Score=41.82  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=62.6

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcch-------HHHhhccC-CChhHHHHHHHHHHhhcCCh-hH-HHHHHhcCCh
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIE-------KLPRILMI-EDSNLQSSTLKLLFNLSFDT-NL-REKIIKIGFL  114 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~-------~Lv~LL~~-~~~~l~~~al~~L~NLS~d~-~~-r~~iv~~g~I  114 (334)
                      +-|+-|+-.|.|||+.+.|-+-+...+=-+       .|++++.. ++...++.|+-+|.||+.-+ .. |..-.+.++|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            457799999999999999999887766444       35555544 56778999999999999854 44 4444579999


Q ss_pred             HHHHHhccCCc
Q psy12638        115 PKLVSLLEEGK  125 (334)
Q Consensus       115 p~Lv~lL~~~~  125 (334)
                      ..|+.++.+.+
T Consensus       219 ~~Li~FiE~a~  229 (257)
T PF12031_consen  219 SHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHH
Confidence            99999996543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>TIGR02270 conserved hypothetical protein

Probab=88.82  E-value=11  Score=37.54  Aligned_cols=80  Identities=19%  Similarity=0.044  Sum_probs=40.0

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCChhhhhHhhc
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIEDRVKAMFAY  149 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~~~r~~i~~  149 (334)
                      ..+.|+.+|.++++.++..++.++..           ......+.+..+|++  +..+..|+..|..+...         
T Consensus       118 a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------  177 (410)
T TIGR02270       118 AEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR---------  177 (410)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---------
Confidence            34445555555555555555544444           112234566666643  33455566655554432         


Q ss_pred             cCcHHHHHHHhccCCCCchHHHHH
Q psy12638        150 TNCMSLLMNMLLVEQDDETDNVLV  173 (334)
Q Consensus       150 t~~i~~Lv~LL~~~~~~~~~~~~~  173 (334)
                       +++|.|...+. +.++.+...++
T Consensus       178 -~a~~~L~~al~-d~~~~VR~aA~  199 (410)
T TIGR02270       178 -LSESTLRLYLR-DSDPEVRFAAL  199 (410)
T ss_pred             -cchHHHHHHHc-CCCHHHHHHHH
Confidence             26666666654 35555544433

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1061|consensus

Probab=87.50  E-value=1.6  Score=45.79  Aligned_cols=49  Identities=27%  Similarity=0.368  Sum_probs=33.5

Q ss_pred             HHHHHHHHhcCC-cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638        255 EVINFIGTAASD-PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS  311 (334)
Q Consensus       255 eav~~lg~la~~-~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~  311 (334)
                      ++|.++|.+|.- .++      ++.|+.|.++++.+++  -++..++.+++.+.++-+
T Consensus       369 kaIraig~~aik~e~~------~~cv~~lLell~~~~~--yvvqE~~vvi~dilRkyP  418 (734)
T KOG1061|consen  369 KAVRAIGRLAIKAEQS------NDCVSILLELLETKVD--YVVQEAIVVIRDILRKYP  418 (734)
T ss_pred             HHHHHhhhhhhhhhhh------hhhHHHHHHHHhhccc--ceeeehhHHHHhhhhcCC
Confidence            789999999973 332      5689999999987663  344445666666664443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=87.13  E-value=2.5  Score=39.14  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             HHHHHHHhcc-cchhhHHHhHhCCcchHHHhhc-cCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCCc
Q psy12638         49 EGRQDSRKLS-VYHVNKEQMANLNLIEKLPRIL-MIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEGK  125 (334)
Q Consensus        49 ~A~~~L~~LS-i~~enk~~m~~~g~I~~Lv~LL-~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~~  125 (334)
                      .|+..|+=+. .++..|....+...++.++.+| ++....++..++.+|..+-.| +.|-..+.+.|++..+++++++..
T Consensus       110 ~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~  189 (257)
T PF08045_consen  110 LALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKS  189 (257)
T ss_pred             HHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcccc
Confidence            4667777777 5788999999999999999999 556788899999888877776 699999999999999999997543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=86.32  E-value=2.9  Score=37.31  Aligned_cols=126  Identities=13%  Similarity=0.014  Sum_probs=77.1

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cCCch
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EEGKH  126 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~~~~  126 (334)
                      .|..++..++....+.-.-.-..++|.|++.+.++...+.+.|..+|..+......-..++    ++.+....  +++..
T Consensus        72 ~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~Kn~~v  147 (228)
T PF12348_consen   72 TACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSKNPQV  147 (228)
T ss_dssp             HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S-HHH
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCCCHHH
Confidence            7777788877655554444456788999999999999999999999999987654222221    34455555  36677


Q ss_pred             HHHHHHHHHHccCChh-hhhHhhcc----CcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638        127 QKIILQLLYHLSIEDR-VKAMFAYT----NCMSLLMNMLLVEQDDETDNVLVALCINL  179 (334)
Q Consensus       127 ~~~al~~L~~LS~~~~-~r~~i~~t----~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL  179 (334)
                      +..++..|..+...-. ....+...    ..++.+...+. ++++++++.+..++..+
T Consensus       148 R~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l  204 (228)
T PF12348_consen  148 REECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWAL  204 (228)
T ss_dssp             HHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
Confidence            8888887877744332 23333333    25666777775 56778877666666555

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.42  E-value=1.2  Score=40.68  Aligned_cols=77  Identities=23%  Similarity=0.267  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHhhcCChhHHHHHHhcCChHH-------HHHhcc---CCchHHHHHHHHHHccCChhh-hhHh-hccCcH
Q psy12638         86 NLQSSTLKLLFNLSFDTNLREKIIKIGFLPK-------LVSLLE---EGKHQKIILQLLYHLSIEDRV-KAMF-AYTNCM  153 (334)
Q Consensus        86 ~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~-------Lv~lL~---~~~~~~~al~~L~~LS~~~~~-r~~i-~~t~~i  153 (334)
                      .=++.|+.+|+.||..+.|-.-+...+-.+.       |+.+|+   ++..|+.|+.+|.+|+.-++. .-.+ .+++||
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            4589999999999999888888877776654       344443   455799999999999986533 3234 457899


Q ss_pred             HHHHHHhcc
Q psy12638        154 SLLMNMLLV  162 (334)
Q Consensus       154 ~~Lv~LL~~  162 (334)
                      ..|+.++..
T Consensus       219 ~~Li~FiE~  227 (257)
T PF12031_consen  219 SHLIAFIED  227 (257)
T ss_pred             HHHHHHHHH
Confidence            999999974

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=85.13  E-value=0.99  Score=39.06  Aligned_cols=69  Identities=16%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             CcchHHHhhhCCchHHHHHHhccc-------cCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        266 DPISAEHFCKNSTVDLLINLLKEM-------QEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       266 ~~~~~~~l~~~g~I~~Lv~LL~~~-------~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ...|.+.|.+.|++..|+++|..-       .++.+...+++.||..++.++..++.++...+.+.+|+..|.+.+
T Consensus        96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~  171 (187)
T PF06371_consen   96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPN  171 (187)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTS
T ss_pred             CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCC
Confidence            456899999999999999988642       134478888899999999888899999998899989888887653

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=85.00  E-value=35  Score=33.48  Aligned_cols=117  Identities=15%  Similarity=0.194  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHhhcC-ChhHHHHH---Hh-cCChHHHHHhccCCc-----hHHHHHHHHHHccC-ChhhhhHhhccCcHH
Q psy12638         86 NLQSSTLKLLFNLSF-DTNLREKI---IK-IGFLPKLVSLLEEGK-----HQKIILQLLYHLSI-EDRVKAMFAYTNCMS  154 (334)
Q Consensus        86 ~l~~~al~~L~NLS~-d~~~r~~i---v~-~g~Ip~Lv~lL~~~~-----~~~~al~~L~~LS~-~~~~r~~i~~t~~i~  154 (334)
                      .+.+.-++++.-+.. ++.....+   .+ ..+.+.|..+++++.     .-..|+.++...=. ++..-..+.+.|-++
T Consensus        75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~  154 (379)
T PF06025_consen   75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID  154 (379)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence            444555555555555 43333322   23 444556667776654     35667777777644 567778888899999


Q ss_pred             HHHHHhc-cCCCCchHHHHHH----HHHHHccCcchHHHHHhcCchHHHHHHHhc
Q psy12638        155 LLMNMLL-VEQDDETDNVLVA----LCINLALNSRNAELMLKNRQLELLMIQAFT  204 (334)
Q Consensus       155 ~Lv~LL~-~~~~~~~~~~~~~----ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~  204 (334)
                      .+.+-+. .+-.+.  .+++.    ++-=++++.+..+++.+.+.|+.+++...+
T Consensus       155 ~~L~~i~~~~i~~s--~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  155 AFLDAITAKGILPS--SEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HHHHHHhccCCCCc--HHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence            8888886 332111  23332    333458899999999999999999988654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0212|consensus

Probab=84.20  E-value=11  Score=38.74  Aligned_cols=170  Identities=15%  Similarity=0.181  Sum_probs=105.9

Q ss_pred             hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC-Cc--hHHHHHH---HHHHccCChh
Q psy12638         69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE-GK--HQKIILQ---LLYHLSIEDR  142 (334)
Q Consensus        69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~-~~--~~~~al~---~L~~LS~~~~  142 (334)
                      -...++.++.-+.+.++.++..|+.-+.-...-+..---..-.|+...+.+++.+ +.  .++++..   .|..+...+.
T Consensus       248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~  327 (675)
T KOG0212|consen  248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER  327 (675)
T ss_pred             cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence            3467888999999999999999998887666543222222335666677777743 22  2333322   2444445555


Q ss_pred             hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHH---HHHHHHHhc
Q psy12638        143 VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILL---LKVIRNMSI  219 (334)
Q Consensus       143 ~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~---~k~l~nLa~  219 (334)
                      .+..|.....|..|.+.+.+ +..+.+-+++.-+..|-....++-.......++-|+..+..++|.++   +.++.+++.
T Consensus       328 ~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  328 LKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS  406 (675)
T ss_pred             hccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence            55556655677778888764 33343333333344554455555555566789999999888888876   446778887


Q ss_pred             CCCchhhhhhhHHHHHHHhhc
Q psy12638        220 HSNVKHYFVDYIGDIANCVQK  240 (334)
Q Consensus       220 ~~~~~~~f~~~i~~L~~~l~~  240 (334)
                      ++... ...+++..|+.+.++
T Consensus       407 s~~~~-~~~~fl~sLL~~f~e  426 (675)
T KOG0212|consen  407 SSNSP-NLRKFLLSLLEMFKE  426 (675)
T ss_pred             Ccccc-cHHHHHHHHHHHHhh
Confidence            76554 234666666666544

>KOG2999|consensus

Probab=83.63  E-value=2.9  Score=42.58  Aligned_cols=141  Identities=17%  Similarity=0.134  Sum_probs=107.5

Q ss_pred             cceeecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCCh----hHHHHHHHHHHhhcCChhHHHHHHhc
Q psy12638         36 CNCYGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDS----NLQSSTLKLLFNLSFDTNLREKIIKI  111 (334)
Q Consensus        36 ~~~~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~----~l~~~al~~L~NLS~d~~~r~~iv~~  111 (334)
                      .+.+....+..|-+|+.-|..+|.....-....+...++.|.+++.+++.    +++..+++++.-|-.+.-+-...+..
T Consensus        89 ~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~  168 (713)
T KOG2999|consen   89 MEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSN  168 (713)
T ss_pred             HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeeccc
Confidence            45555555667778999999999999988888888999999999988765    67888888888777666566666667


Q ss_pred             CChHHHHHhcc----CCchHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHH
Q psy12638        112 GFLPKLVSLLE----EGKHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCI  177 (334)
Q Consensus       112 g~Ip~Lv~lL~----~~~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~  177 (334)
                      .+|-+.+.+.+    +...-..|+.+|-++-. ++..+..+++.--+..|+..+. ..+.+++..+++++-
T Consensus       169 ~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq-~~n~~i~~~aial~n  238 (713)
T KOG2999|consen  169 DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ-VSNQRIQTCAIALLN  238 (713)
T ss_pred             HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH-hcchHHHHHHHHHHH
Confidence            77777777773    23456779999998855 4557888888889999999997 456677666555543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=83.48  E-value=3.3  Score=32.47  Aligned_cols=68  Identities=15%  Similarity=0.242  Sum_probs=46.0

Q ss_pred             cCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc
Q psy12638        111 IGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA  180 (334)
Q Consensus       111 ~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs  180 (334)
                      .-+||++..++.++  ..|.+|.-.|||++..-.....--..+....|.+++. ++++.+++. +.++-+|-
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~-a~~Ld~ll   95 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA-DPDENVRSA-AELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHH-HHHHHHHh
Confidence            45789999999655  5789999999999866433222122456777778775 467777554 36666653

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=83.27  E-value=4.5  Score=34.46  Aligned_cols=72  Identities=17%  Similarity=0.331  Sum_probs=54.2

Q ss_pred             HHHHHhcC-Ccc-hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhh
Q psy12638        258 NFIGTAAS-DPI-SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLN  331 (334)
Q Consensus       258 ~~lg~la~-~~~-~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~  331 (334)
                      .+++.+=. .|+ +..++..+|+.+.+..+...+.++..+...++.++..-|.+.++|..+.+ .+++ .|-++++
T Consensus        65 ~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~-~L~~~~~  138 (157)
T PF11701_consen   65 SALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVS-WLKELYK  138 (157)
T ss_dssp             HHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHH-HHHHHTT
T ss_pred             HHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHH-HHHHHHc
Confidence            34444433 444 66788999999999999987778888888889999999999999987765 3555 7777774

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=82.56  E-value=62  Score=35.03  Aligned_cols=56  Identities=20%  Similarity=0.212  Sum_probs=45.1

Q ss_pred             HHHHhcCChHHHHHhccC-------CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhc
Q psy12638        106 EKIIKIGFLPKLVSLLEE-------GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL  161 (334)
Q Consensus       106 ~~iv~~g~Ip~Lv~lL~~-------~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~  161 (334)
                      ..|.+.|++..++.++.+       ...-...+++|.+.+....+|..+.+.++++.|++.+.
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~  173 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLN  173 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHH
Confidence            344568999999999942       12455678888888999999999999999999988885

>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins

Probab=80.58  E-value=3  Score=33.40  Aligned_cols=38  Identities=24%  Similarity=0.412  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc
Q psy12638         88 QSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK  125 (334)
Q Consensus        88 ~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~  125 (334)
                      +..+++-|..||..|+.-..+++.|+++.|+.||..+.
T Consensus        63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN  100 (108)
T PF08216_consen   63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHEN  100 (108)
T ss_pred             HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCC
Confidence            56788889999999999999999999999999996543

A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].

>KOG1077|consensus

Probab=80.09  E-value=25  Score=37.16  Aligned_cols=175  Identities=17%  Similarity=0.162  Sum_probs=104.6

Q ss_pred             hhhhcccccceeccccccccccchhhhcccCCcceeecccCc--chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhcc
Q psy12638          4 EYYHRNLHIEVTHDTYPTRNAGVKAQRFDRGNCNCYGLIVPK--SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILM   81 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~   81 (334)
                      ++|..-++.-++.=.++.++.++-.|       ++.-+|+|.  -...+.+.|...-.   -.+.-.....++.|-++|.
T Consensus       220 ~~yk~~~~~avs~L~riv~~~~t~~q-------dYTyy~vP~PWL~vKl~rlLq~~p~---~~D~~~r~~l~evl~~iLn  289 (938)
T KOG1077|consen  220 ESYKTCLPLAVSRLSRIVVVVGTSLQ-------DYTYYFVPAPWLQVKLLRLLQIYPT---PEDPSTRARLNEVLERILN  289 (938)
T ss_pred             HHHhhhHHHHHHHHHHHHhhcccchh-------hceeecCCChHHHHHHHHHHHhCCC---CCCchHHHHHHHHHHHHHh
Confidence            45666666666666666665555332       444445542  23345555555433   2222222333444444442


Q ss_pred             CCC-------h---hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhc
Q psy12638         82 IED-------S---NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAY  149 (334)
Q Consensus        82 ~~~-------~---~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~  149 (334)
                      ..+       .   -.++..+.=.-||+++-+...++.. .++..|-++|.  .+..|.+|+--+..|+..+-.-..+.+
T Consensus       290 k~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~  368 (938)
T KOG1077|consen  290 KAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKK  368 (938)
T ss_pred             ccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHH
Confidence            221       1   2333344445678877544444442 35778888884  567899999999999887655555555


Q ss_pred             cCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhc
Q psy12638        150 TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKN  192 (334)
Q Consensus       150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~  192 (334)
                      .  ...++..|.+..+..+.+.++.++|-. .|.+|+..|+++
T Consensus       369 h--~d~Ii~sLkterDvSirrravDLLY~m-cD~~Nak~IV~e  408 (938)
T KOG1077|consen  369 H--QDTIINSLKTERDVSIRRRAVDLLYAM-CDVSNAKQIVAE  408 (938)
T ss_pred             H--HHHHHHHhccccchHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence            4  677888888767777777777777754 367899999875

>KOG1240|consensus

Probab=80.07  E-value=23  Score=39.52  Aligned_cols=110  Identities=15%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             cccCCcceeecccC---------cchhHHHHHHHhcccc--hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhc
Q psy12638         31 FDRGNCNCYGLIVP---------KSKREGRQDSRKLSVY--HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLS   99 (334)
Q Consensus        31 ~~r~~~~~~~~~~~---------~~~~~A~~~L~~LSi~--~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS   99 (334)
                      .+..|.-+++.+++         .+|.+|+..|..||.+  .|+|..    .++|.++.++..+..+++..|+..|.-+-
T Consensus       415 ~~~~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L  490 (1431)
T KOG1240|consen  415 PKEEGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEADVRATALETLTELL  490 (1431)
T ss_pred             ccccceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            33455555555444         6788999999999965  445544    48999999999999999999987776543


Q ss_pred             CChhHHHHHHhcCChHHHHHhc-cCC--chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHh
Q psy12638        100 FDTNLREKIIKIGFLPKLVSLL-EEG--KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNML  160 (334)
Q Consensus       100 ~d~~~r~~iv~~g~Ip~Lv~lL-~~~--~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL  160 (334)
                      ..                |+=+ ..+  .+.++-+=-|.+|+.| ......|++..+|+.|.+-.
T Consensus       491 ~~----------------Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA  539 (1431)
T KOG1240|consen  491 AL----------------VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA  539 (1431)
T ss_pred             hh----------------ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH
Confidence            10                0001 011  1355555566677777 66777777777888776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	9e-14
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-09
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-06
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-09
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-04

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 71.0 bits (173), Expect = 9e-14
 Identities = 48/283 (16%), Positives = 104/283 (36%), Gaps = 17/283 (6%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE 122
               +AN  +   L  +   E  N Q    ++L  +     LR K+++ G +  L+ +  
Sbjct: 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL 546

Query: 123 EG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETD----NVLVALC 176
           EG  K ++   Q L  + I    +  F+    + ++  +L + Q D T       L+AL 
Sbjct: 547 EGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606

Query: 177 INLALNSRNAELMLK---NRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGD 233
              ++N    + ++K     ++E  +++          + + N+ +  +V   F      
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDR 666

Query: 234 IANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE 291
           +       +++DE     C G L +I    T+ S     +     S +D+L  L+     
Sbjct: 667 VKFLALLCEDEDEETATACAGALAII----TSVSVKCCEKILAIASWLDILHTLIAN--P 720

Query: 292 DDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
              +  + + +   +          + ETD    +  L    +
Sbjct: 721 SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPD 763

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 62.6 bits (152), Expect = 5e-11
 Identities = 41/292 (14%), Positives = 99/292 (33%), Gaps = 20/292 (6%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGF 113
             LS +      +     I  L ++L     ++    +  L NL       +  +   G 
Sbjct: 82  HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 141

Query: 114 LPKLVSLLEEGKH--QKIILQLLYHLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDN 170
           L K+V+LL +       I    L  L+  ++  K +   +     L+N++     ++   
Sbjct: 142 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201

Query: 171 VLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILL---LKVIRNMSIHSNVKHYF 227
               +   L++ S N   +++   ++ L +        L+   L  +RN+S  +  +   
Sbjct: 202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--- 258

Query: 228 VDYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
               G +   VQ     D N+     G L  +       ++  +    C+   ++ L+  
Sbjct: 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL-----TCNNYKNKMMVCQVGGIEALVRT 313

Query: 286 LKEMQEDDEIVLQILYVFYQICRHASCQNYL---IKETDAPAYMIDLLNDGN 334
           +    + ++I    +     +             ++       ++ LL+  +
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 38/258 (14%), Positives = 78/258 (30%), Gaps = 37/258 (14%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSN--LQSSTLKLLFNLSFDT----NLREKIIKIGFLPK 116
           NK  +  +  IE L R ++       +    +  L +L+         +  +     LP 
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356

Query: 117 LVSLLEEGKHQKII---LQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV 173
           +V LL    H  +I   + L+ +L++     A       +  L+ +L+    D      +
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416

Query: 174 ALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGD 233
                  +     E +++                      +  ++   + +         
Sbjct: 417 GGTQQQFVEGVRMEEIVEG-----------------CTGALHILARDVHNRIVIRGLNT- 458

Query: 234 IANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE 291
           I   VQ      ENI+    G L  +      A D  +AE          L  LL     
Sbjct: 459 IPLFVQLLYSPIENIQRVAAGVLCEL------AQDKEAAEAIEAEGATAPLTELLHS--R 510

Query: 292 DDEIVLQILYVFYQICRH 309
           ++ +      V +++   
Sbjct: 511 NEGVATYAAAVLFRMSED 528

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 61  HVNKEQMANLNLIEKLPRILM-IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS 119
                 M +  ++  + R +    D      T   L NLS        I K G +P LV 
Sbjct: 46  ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK 105

Query: 120 LLEEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALC 176
           +L           +  L++L + ++  K        +  ++ +L              L 
Sbjct: 106 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165

Query: 177 INLALNSRNAELMLKNRQ-----LELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYI 231
             LA  ++ ++L++         + ++    + +      +V++ +S+ S+ K   V+  
Sbjct: 166 -ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-- 222

Query: 232 GDIANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
              A  +Q       +  + +   CL TL              + +       +  L+ L
Sbjct: 223 ---AGGMQALGLHLTDPSQRLVQNCLWTL--------RNLSDAATKQEGMEGLLGTLVQL 271

Query: 286 LKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
           L    +D  +V     +   +  +      ++ +      ++  +    
Sbjct: 272 LGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 318

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 38/292 (13%), Positives = 89/292 (30%), Gaps = 41/292 (14%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK-IGFLPKLVSLL 121
             +       I +L ++L  ED  + +    ++  LS     R  I++    +  +V  +
Sbjct: 6   QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
           +        +     L++LS           +  +  L+ ML    D      +  L  N
Sbjct: 66  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH-N 124

Query: 179 LALNSRNAEL-------------MLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNV-K 224
           L L+   A++             +L    ++ L I             ++ ++  +   K
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC---------LQILAYGNQESK 175

Query: 225 HYFVDY--IGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLL 282
              +       + N ++    E +       L+V+      +    +     +   +  L
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL------SVCSSNKPAIVEAGGMQAL 229

Query: 283 INLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
              L +      +V   L+    +   A+ Q            ++ LL   +
Sbjct: 230 GLHLTD--PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDD 276

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
             L+    N+  +  LN I    ++L     N+Q     +L  L+ D    E I   G  
Sbjct: 441 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGAT 500

Query: 115 PKLVSLLEEG--KHQKIILQLLYHLS 138
             L  LL             +L+ +S
Sbjct: 501 APLTELLHSRNEGVATYAAAVLFRMS 526

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 26/163 (15%)

Query: 62  VNKEQMANLNLIEKLPRILMIEDSN-LQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSL 120
           + +  +     +  + ++L       L  +T+ L+ NL+        + + G +P+LV L
Sbjct: 343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 402

Query: 121 LEEGKHQKI------------------------ILQLLYHLSIEDRVKAMFAYTNCMSLL 156
           L                                    L+ L+ +   + +    N + L 
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462

Query: 157 MNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLM 199
           + +L    ++        LC  LA +   AE +        L 
Sbjct: 463 VQLLYSPIENIQRVAAGVLC-ELAQDKEAAEAIEAEGATAPLT 504

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 61.7 bits (150), Expect = 8e-11
 Identities = 42/292 (14%), Positives = 100/292 (34%), Gaps = 20/292 (6%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGF 113
             LS +      +     I  L ++L     ++    +  L NL       +  +   G 
Sbjct: 85  HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 144

Query: 114 LPKLVSLLEEG--KHQKIILQLLYHLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDN 170
           L K+V+LL +   K   I    L  L+  ++  K +   +     L+N++     ++   
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204

Query: 171 VLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILL---LKVIRNMSIHSNVKHYF 227
               +   L++ S N   +++   ++ L +        L+   L  +RN+S  +  +   
Sbjct: 205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--- 261

Query: 228 VDYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
               G +   VQ     D N+     G L  +       ++  +    C+   ++ L+  
Sbjct: 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL-----TCNNYKNKMMVCQVGGIEALVRT 316

Query: 286 LKEMQEDDEIVLQILYVFYQICRHASC---QNYLIKETDAPAYMIDLLNDGN 334
           +    + ++I    +     +             ++       ++ LL+  +
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 59/319 (18%), Positives = 103/319 (32%), Gaps = 54/319 (16%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFL 114
           + LSV   NK  +     ++ L   L      L  + L  L NLS      ++    G L
Sbjct: 211 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLL 268

Query: 115 PKLVSLLEEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDE--TD 169
             LV LL             +L +L+    + K M      +  L+  +L   D E  T+
Sbjct: 269 GTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328

Query: 170 NVLVALCINLALNSRNAELMLKNRQ-----------LELLMIQAFTQKNILLLKVIRNMS 218
             + AL  +L    + AE     +            ++LL   +        + +IRN++
Sbjct: 329 PAICALR-HLTSRHQEAE---MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384

Query: 219 IHSNVKHYFVDY-----------------------IGDIANCVQKEKDENIKLECLGTLE 255
           +         +                         G     V+  + E I   C G L 
Sbjct: 385 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 444

Query: 256 VINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNY 315
           ++      A D  +       +T+ L + LL      + I      V  ++ +       
Sbjct: 445 IL------ARDVHNRIVIRGLNTIPLFVQLLYS--PIENIQRVAAGVLCELAQDKEAAEA 496

Query: 316 LIKETDAPAYMIDLLNDGN 334
           +  E  A A + +LL+  N
Sbjct: 497 IEAE-GATAPLTELLHSRN 514

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 40/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 61  HVNKEQMANLNLIEKLPRILM-IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS 119
                 M +  ++  + R +    D      T   L NLS        I K G +P LV 
Sbjct: 49  ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK 108

Query: 120 LLEEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALC 176
           +L           +  L++L + ++  K        +  ++ +L              L 
Sbjct: 109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168

Query: 177 INLALNSRNAELMLKNRQ-----LELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYI 231
             LA  ++ ++L++         + ++    + +      +V++ +S+ S+ K   V+  
Sbjct: 169 -ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-- 225

Query: 232 GDIANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINL 285
              A  +Q       +  + +   CL TL  ++   T                +  L+ L
Sbjct: 226 ---AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL--------LGTLVQL 274

Query: 286 LKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
           L    +D  +V     +   +  +      ++ +      ++  +    
Sbjct: 275 LGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 38/283 (13%), Positives = 92/283 (32%), Gaps = 23/283 (8%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK-IGFLPKLVSLL 121
             +       I +L ++L  ED  + +    ++  LS     R  I++    +  +V  +
Sbjct: 9   QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
           +        +     L++LS           +  +  L+ ML    D      +  L  N
Sbjct: 69  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH-N 127

Query: 179 LALNSRNAELMLKNRQLELLMIQAFTQKNILLLKV----IRNMSIHSNV-KHYFVDY--I 231
           L L+   A++ ++       M+    + N+  L +    ++ ++  +   K   +     
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 232 GDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE 291
             + N ++    E +       L+V+      +    +     +   +  L   L +   
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVL------SVCSSNKPAIVEAGGMQALGLHLTD--P 239

Query: 292 DDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
              +V   L+    +   A+ Q            ++ LL   +
Sbjct: 240 SQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDD 279

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 57  LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPK 116
           L+    N+  +  LN I    ++L     N+Q     +L  L+ D    E I   G    
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505

Query: 117 LVSLLEEG--KHQKIILQLLYHLS 138
           L  LL             +L+ +S
Sbjct: 506 LTELLHSRNEGVATYAAAVLFRMS 529

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 52/301 (17%), Positives = 102/301 (33%), Gaps = 33/301 (10%)

Query: 62  VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121
             + Q A+   +++    +     +     + +L  LSFD   R  + ++G L  +  LL
Sbjct: 23  CWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELL 82

Query: 122 EEGKHQKIILQL-------------LYHLSIED-RVKAMF-AYTNCMSLLMNMLLVEQDD 166
           +       +                L +L+  D   KA   +   CM  L+  L  E +D
Sbjct: 83  QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 142

Query: 167 ETDNVLVALCINLAL--NSRNAELMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIH 220
               +   L  NL+   +  + + + +   ++ LM  A   K    LK     + N+S H
Sbjct: 143 LQQVIASVLR-NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201

Query: 221 S-NVKHYFVDYIGDIANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHF 273
               K       G +A  V       +     I     G L   N     A++    +  
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR--NVSSLIATNEDHRQIL 259

Query: 274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333
            +N+ +  L+  LK       IV       + +          + +  A + + +L++  
Sbjct: 260 RENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 317

Query: 334 N 334
           +
Sbjct: 318 H 318

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 49/270 (18%), Positives = 98/270 (36%), Gaps = 38/270 (14%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIE-----------DSNLQSSTLKLLFNLSF-DT 102
            KLS    ++  M  L  ++ +  +L ++              L+      L NL+F D 
Sbjct: 57  MKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV 116

Query: 103 NLREKIIKI-GFLPKLVSLLEEGKH--QKIILQLLYHLSI--EDRVKAMFAYTNCMSLLM 157
             +  +  + G +  LV+ L+      Q++I  +L +LS   +   K        +  LM
Sbjct: 117 ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176

Query: 158 NMLLVEQDDETDNVLVALCINLALNSRN--AELMLKN----RQLELLMIQAFTQKNILLL 211
              L  + + T   +++   NL+ +     A++   +      +  L  ++ T    ++ 
Sbjct: 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236

Query: 212 K---VIRNMSIHSNVKHYFVDYIGDIANCVQ------KEKDENIKLECLGTLEVINFIGT 262
               ++RN+S            + +  NC+Q      K     I     GTL  +     
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNL----- 290

Query: 263 AASDPISAEHFCKNSTVDLLINLLKEMQED 292
           +A +P   E       V +L NL+    + 
Sbjct: 291 SARNPKDQEALWDMGAVSMLKNLIHSKHKM 320

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 55.7 bits (134), Expect = 8e-09
 Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 33/301 (10%)

Query: 62  VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121
             + Q A+   +++    +     +     + +L  LSFD   R  + ++G L  +  LL
Sbjct: 139 CWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELL 198

Query: 122 EEGKHQKIILQL-------------LYHLSIED-RVKAMF-AYTNCMSLLMNMLLVEQDD 166
           +       +                L +L+  D   KA   +   CM  L+  L  E +D
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258

Query: 167 ETDNVLVALCINLAL--NSRNAELMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIH 220
               +   L  NL+   +  + + + +   ++ LM  A   K    LK     + N+S H
Sbjct: 259 LQQVIASVLR-NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317

Query: 221 SNVKHY-FVDYIGDIANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHF 273
                       G +A  V       +     I     G L   N     A++    +  
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR--NVSSLIATNEDHRQIL 375

Query: 274 CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG 333
            +N+ +  L+  LK       IV       + +          + +  A + + +L++  
Sbjct: 376 RENNCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 433

Query: 334 N 334
           +
Sbjct: 434 H 434

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 46/269 (17%), Positives = 92/269 (34%), Gaps = 36/269 (13%)

Query: 55  RKLSVYHVNKEQMANLNLIEKLPRILMIE-----------DSNLQSSTLKLLFNLSF--D 101
            KLS    ++  M  L  ++ +  +L ++              L+      L NL+F   
Sbjct: 173 MKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV 232

Query: 102 TNLREKIIKIGFLPKLVSLLEEGKH--QKIILQLLYHLSI--EDRVKAMFAYTNCMSLLM 157
            N        G +  LV+ L+      Q++I  +L +LS   +   K        +  LM
Sbjct: 233 ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292

Query: 158 NMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQ------LELLMIQAFTQKNILLL 211
              L  + + T   +++   NL+ +    +  +          +  L  ++ T    ++ 
Sbjct: 293 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 352

Query: 212 K---VIRNMSIHSNVKHYFVDYIGD---IANCVQ--KEKDENIKLECLGTLEVINFIGTA 263
               ++RN+S            + +   +   +Q  K     I     GTL  +     +
Sbjct: 353 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL-----S 407

Query: 264 ASDPISAEHFCKNSTVDLLINLLKEMQED 292
           A +P   E       V +L NL+    + 
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKM 436

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 26/272 (9%)

Query: 63  NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121
           +K  +      + L  I+       L  +T ++L  LS  ++ +  I++ G +  L   L
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369

Query: 122 EEGKH--QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL 179
            +      +  L  L +LS     +        +  L+ +L  +  +        L  NL
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLGSDDINVVTCAAGILS-NL 426

Query: 180 ALNS-RNAELMLKNRQLELL--MIQAFTQKNILLLKV---IRNMSIHSNVKHYFVDYIGD 233
             N+ +N  ++ +   +E L   +     +  +       +R+++          + +  
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486

Query: 234 ------IANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLK 287
                 +   +       +    +G +  +      A  P +     +   +  L+ LL 
Sbjct: 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNL------ALCPANHAPLREQGAIPRLVQLLV 540

Query: 288 EMQEDDEIVLQILYVFYQICRHASCQNYLIKE 319
                 +   +      Q       +   I E
Sbjct: 541 R--AHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.7 bits (126), Expect = 9e-08
 Identities = 40/287 (13%), Positives = 95/287 (33%), Gaps = 31/287 (10%)

Query: 63  NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL 121
               M +  ++  + R +    D      T   L NLS        I K G +P LV++L
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243

Query: 122 EEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
                      +  L++L + ++  K        +  ++ +L              L   
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-I 302

Query: 179 LALNSRNAELMLKNRQ-----LELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGD 233
           LA  ++ ++L++         + ++    + +      +V++ +S+ S+ K   V+    
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE---- 358

Query: 234 IANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLK 287
            A  +Q       +  + +   CL TL  ++   T                +  L+ LL 
Sbjct: 359 -AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL--------LGTLVQLLG 409

Query: 288 EMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
              +D  +V     +   +  +      ++ +      ++  +    
Sbjct: 410 S--DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 454

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 41/283 (14%), Positives = 85/283 (30%), Gaps = 45/283 (15%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL 121
             +Q     L+  L ++L  +D N+ +    +L NL+  +   +  + ++G +  LV  +
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450

Query: 122 EEGKHQK--------IILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLV 173
                ++         +  L       +  +        + +++ +L            V
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510

Query: 174 ALCINLALNSRNAELM-------------------LKNRQLELLMIQAFTQKNILLLKV- 213
            L  NLAL   N   +                    + R       Q F +   +   V 
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570

Query: 214 -----IRNMSIHSNVKHYFVDYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASD 266
                +  ++   + +         I   VQ      ENI+    G L  +      A D
Sbjct: 571 ACTGALHILARDIHNRIVIRGLNT-IPLFVQLLYSPIENIQRVAAGVLCEL------AQD 623

Query: 267 PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH 309
             +AE          L  LL     ++ +      V +++   
Sbjct: 624 KEAAEAIEAEGATAPLTELLHS--RNEGVATYAAAVLFRMSED 664

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 57  LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPK 116
           L+    N+  +  LN I    ++L     N+Q     +L  L+ D    E I   G    
Sbjct: 579 LARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 638

Query: 117 LVSLLEEG--KHQKIILQLLYHLS 138
           L  LL             +L+ +S
Sbjct: 639 LTELLHSRNEGVATYAAAVLFRMS 662

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 43.1 bits (101), Expect = 9e-05
 Identities = 22/172 (12%), Positives = 51/172 (29%), Gaps = 25/172 (14%)

Query: 54  SRKLSVYHVNKEQMANLNLIEKLPRILM----------------------IEDSNLQSST 91
            R L++   N   +     I +L ++L+                      +    +  + 
Sbjct: 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC 572

Query: 92  LKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAY 149
              L  L+ D + R  I  +  +P  V LL       Q++   +L  L+ +         
Sbjct: 573 TGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 632

Query: 150 TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQ 201
               + L  +L    +         L   ++ +         + +L   + +
Sbjct: 633 EGATAPLTELLHSRNEGVATYAAAVLF-RMSEDKPQDYKKRLSVELTSSLFR 683

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 35/258 (13%), Positives = 90/258 (34%), Gaps = 18/258 (6%)

Query: 87  LQSSTLKLLFNLSFDTNLREK-IIKIGFLPKLVSLLEEGKH--QKIILQLLYHLSIEDRV 143
           L   +  L   +    N ++   +    +P+L  LL +           +++ LS ++  
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183

Query: 144 K-AMFAYTNCMSLLMNMLLVEQDDET-DNVLVALCINLALNSRNAELMLKNRQLELLMIQ 201
           + A+      +S ++  +    D ET       L  NL+ +      + K+  +  L+  
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLH-NLSHHREGLLAIFKSGGIPALVNM 242

Query: 202 AFTQKNILL---LKVIRNMSIHSNVKHYFVDYIGDIANCVQ--KEKDENIKLECLGTLEV 256
             +  + +L   +  + N+ +H       V   G +   V    + +          L++
Sbjct: 243 LGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 302

Query: 257 INFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYL 316
           +     A  +  S      +     L+N+++     ++++     V   +   +S +  +
Sbjct: 303 L-----AYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAI 356

Query: 317 IKETDAPAYMIDLLNDGN 334
           + E      +   L D +
Sbjct: 357 V-EAGGMQALGLHLTDPS 373

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 20/289 (6%)

Query: 58  SVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPK 116
           S   +    +     +     +L  E  ++Q   +  L N++ D T  R+ ++    LP 
Sbjct: 94  SGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPP 153

Query: 117 LVSLLEEG---KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDET-DNVL 172
           L+ L  +       +  +  L +L         FA  +    +++ LL   D +   +  
Sbjct: 154 LLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADAC 213

Query: 173 VALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILL----LKVIRNMSIHSNVKHYFV 228
            AL       +   + ++       L ++     +  +    L+ + N+    +++   +
Sbjct: 214 WALSYLSDGPNDKIQAVIDAGVCRRL-VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI 272

Query: 229 DYIGDIANCVQ--KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLL 286
                + + +       E+IK E   T+  I      A +    +     +    LI++L
Sbjct: 273 LNCSALQSLLHLLSSPKESIKKEACWTISNI-----TAGNRAQIQTVIDANIFPALISIL 327

Query: 287 KEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDGN 334
           +    +     +  +         S  Q   + E      + DLL   +
Sbjct: 328 QT--AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 18/200 (9%)

Query: 72  LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLLEEGKH--QK 128
            +  L  +L + D+++ +     L  LS   N   + +I  G   +LV LL    +    
Sbjct: 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVS 252

Query: 129 IILQLLYHL-SIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAE 187
             L+ + ++ + +D    +    + +  L+++L   ++         +  N+   +R   
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS-NITAGNRAQI 311

Query: 188 LMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIHSNVKHYFVDYIGDIANCVQ---- 239
             + +  +   +I           K     I N +   + +   + Y+ +   C++    
Sbjct: 312 QTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ--IKYLVE-LGCIKPLCD 368

Query: 240 --KEKDENIKLECLGTLEVI 257
                D  I    L  LE I
Sbjct: 369 LLTVMDSKIVQVALNGLENI 388

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 7e-07
 Identities = 51/349 (14%), Positives = 96/349 (27%), Gaps = 86/349 (24%)

Query: 22  RNAGVKAQRFDR------GNCNC-----------YGLIVPKSKREGRQDSRKLSVYHVNK 64
            +  V+ +   +       NCN               I P         S      H  +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 65  EQMANLNLIEKLPRILMIEDSNLQSS-TLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE 123
            ++  L   +     L++   N+Q++         +F+  L  KI        L++   +
Sbjct: 232 AELRRLLKSKPYENCLLVLL-NVQNAKAWN-----AFN--LSCKI--------LLTTRFK 275

Query: 124 GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVL--VALCINLAL 181
                +      H+S++             SLL+  L     D     L    L  N   
Sbjct: 276 QVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQD-----LPREVLTTNPRR 329

Query: 182 NSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIH----SNVKHYFVDYIGDIANC 237
            S  AE  +++    L     +   N   L  I   S++    +  +  F          
Sbjct: 330 LSIIAE-SIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-------L 378

Query: 238 VQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTV------------DLLINL 285
                  +I       L +I F    +   +      K S V             + + L
Sbjct: 379 SVFPPSAHIPTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 286 LKEMQEDDEIVLQILYVFYQICRHASC-QNYLIKETDAPAYMIDLLNDG 333
             +++ +  +             H S   +Y I +T     +I    D 
Sbjct: 436 KVKLENEYAL-------------HRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 55/303 (18%), Positives = 106/303 (34%), Gaps = 98/303 (32%)

Query: 42  IVPKSKREG--RQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDS--NLQSSTLKLLF- 96
           I+ +S R+G    D+ K    HVN +++             +IE S   L+ +  + +F 
Sbjct: 332 IIAESIRDGLATWDNWK----HVNCDKLTT-----------IIESSLNVLEPAEYRKMFD 376

Query: 97  NLS-F--DTNLREKIIKI-----------GFLPKLV--SLLEEGKHQKIILQLLYHLSIE 140
            LS F    ++   ++ +             + KL   SL+E  K  K     +  + +E
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSIYLE 434

Query: 141 DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN--------------LA---LNS 183
            +VK    Y       ++  +V+      N+      +              +     N 
Sbjct: 435 LKVKLENEYA------LHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 184 RNAELMLKNRQ--LELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIAN----- 236
            + E M   R   L+   ++   QK       IR+ S   N     ++ +  +       
Sbjct: 485 EHPERMTLFRMVFLDFRFLE---QK-------IRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 237 CVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLL-INLLKEMQEDDEI 295
           C    K E +    +  +  ++F+     + I +++       DLL I L   M ED+ I
Sbjct: 535 CDNDPKYERL----VNAI--LDFLPKIEENLICSKY------TDLLRIAL---MAEDEAI 579

Query: 296 VLQ 298
             +
Sbjct: 580 FEE 582

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 42/261 (16%), Positives = 92/261 (35%), Gaps = 26/261 (9%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLL 121
           +     + + + ++ + L  +D   Q S  +    +  D N   + +I  G LP LV LL
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 122 EEG--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
                +  +  L  L +++   +           +  L+ +L    +      L AL   
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 179 LALNSRNAELMLKNRQLELLMIQAFTQKNILLLK----VIRNMSIHSNVKHYFVDYIGDI 234
            +  +   + ++    L  L +Q  +  N  +L+     + N++   N +   +  + D 
Sbjct: 124 ASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQ---IQAVID- 178

Query: 235 ANCVQ------KEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKE 288
           A  +          +E I  E L  L  I     A+      +   +   ++ L  L   
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNI-----ASGGNEQKQAVKEAGALEKLEQLQSH 233

Query: 289 MQEDDEIVLQILYVFYQICRH 309
             E+++I  +      ++  H
Sbjct: 234 --ENEKIQKEAQEALEKLQSH 252

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 46.9 bits (110), Expect = 6e-06
 Identities = 40/271 (14%), Positives = 92/271 (33%), Gaps = 10/271 (3%)

Query: 73  IEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEEG--KHQKI 129
           + ++  +L      ++S+    L +L + +  ++  + K+  +P LV LL+    +    
Sbjct: 50  LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109

Query: 130 ILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAE 187
               L ++S       K      + +  L+ +L   +D +   V+     NL+ +     
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169

Query: 188 LMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANC-VQKEKDENI 246
            ++ +    L                      H   +    +  G + N   ++ +    
Sbjct: 170 EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRK 229

Query: 247 KLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLL----KEMQEDDEIVLQILYV 302
             EC G ++ + FI  A      ++     + V LL NL     +E+ + +        V
Sbjct: 230 LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNV 289

Query: 303 FYQICRHASCQNYLIKETDAPAYMIDLLNDG 333
                   +    L+ + +     I LL + 
Sbjct: 290 ANNTGTSPARGYELLFQPEVVRIYISLLKES 320

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 42/282 (14%), Positives = 87/282 (30%), Gaps = 13/282 (4%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL--REKIIKIGFLPKLVSL 120
            K  +  L  I  L  +L      +       L N+SF  +   +  I     +P LV L
Sbjct: 82  VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141

Query: 121 LEEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL------VEQDDETDNV 171
           L + +     ++I   L++LS  D +K         +L   +++       E +++    
Sbjct: 142 LRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201

Query: 172 LVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDY- 230
            +     L   +     +   R      ++        L+ +++      +     V+  
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261

Query: 231 IGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ 290
           +  + N   +   E  + E            T  S     E   +   V + I+LLK   
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK-ES 320

Query: 291 EDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLND 332
           +   I+         +C         I+        +  + D
Sbjct: 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 36/295 (12%), Positives = 82/295 (27%), Gaps = 47/295 (15%)

Query: 47  KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLS--FDTNL 104
             +   D    ++  +   Q      +E + + +   +   Q    +    L        
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92

Query: 105 REKIIKIGFLPKLVSLLEEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQ 164
            + II+ G +PK VS L +     I  +            + +A TN  S          
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFE------------SAWALTNIASGTSEQTKAVV 140

Query: 165 DDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHS-NV 223
           D       ++L     L S +A +            QA           + N++      
Sbjct: 141 DGGAIPAFISL-----LASPHAHIS----------EQAVW--------ALGNIAGDGSAF 177

Query: 224 KHYFVDY--IGDIANCVQKEKDENIKLE--CLGTLEVINFIGTAASDPISAEHFCKNSTV 279
           +   + +  I  +   +       +        T  + N      +   +         +
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL---CRNKNPAPPLDAVEQIL 234

Query: 280 DLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN 334
             L+ LL     D E++    +    +    + +  ++ +      ++ LL    
Sbjct: 235 PTLVRLLHH--NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 7/133 (5%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL 121
             + + +   +  L ++L   +  +    L  L N++       + +I  G LP LV LL
Sbjct: 46  QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105

Query: 122 EEGKH--QKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCI 177
                   +  L  L +++    ++++A+      +  L+ +L    +      L AL  
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALS- 163

Query: 178 NLALNSRNAELML 190
           N+A      +  +
Sbjct: 164 NIASGGNEQKQAV 176

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 28/135 (20%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL-REKIIKIGFLPKLVSLL 121
            ++++  L  I KL ++L +++ ++Q +    L NL F+ N  + ++ ++  +P+L+ +L
Sbjct: 44  ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVL 103

Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
           ++ +    +K I  LL++LS  D++K +   T  +  L   +++      +         
Sbjct: 104 KQTRDLETKKQITGLLWNLSSNDKLKNLMI-TEALLTLTENIIIPFSGWPEGDYPKANGL 162

Query: 179 LALN-SRNAELMLKN 192
           L  +   N    L+N
Sbjct: 163 LDFDIFYNVTGCLRN 177

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 45/304 (14%), Positives = 98/304 (32%), Gaps = 35/304 (11%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL 121
            K+Q+  L  I KL  +L   + N+Q +    L NL F  T  + +  +   + + VSLL
Sbjct: 36  AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95

Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLV--------------EQ 164
               +   QK +  LL++LS  D +K      + + +L + +++              E 
Sbjct: 96  RRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREV 154

Query: 165 DDETDNVLVALCI-NLALNSRNAELMLKNRQL-ELLM--IQAFTQKNILLLKVIRN---- 216
            D         C+ NL+      + M     L + LM  +Q     +    K + N    
Sbjct: 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214

Query: 217 -MSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINF-------IGTAASDPI 268
             ++   +          +    +    E     C                +    ++P 
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK 274

Query: 269 SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMID 328
            +     +  +   +NL+ + ++D  +      +           + + +        + 
Sbjct: 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334

Query: 329 LLND 332
            +  
Sbjct: 335 QIAR 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.95
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.95
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.94
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.93
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.92
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.91
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.91
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.91
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.9
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.9
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.88
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.88
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.88
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.87
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.86
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.86
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.85
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.85
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.83
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.82
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.82
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.81
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.8
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.79
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.78
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.78
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.77
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.65
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.64
3grl_A	651	General vesicular transport factor P115; vesicle t	99.44
3grl_A	651	General vesicular transport factor P115; vesicle t	99.16
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.44
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.43
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.24
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.96
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.95
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.91
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.85
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.82
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.81
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.81
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.59
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.57
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.47
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.38
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.37
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.36
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.36
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	97.25
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.84
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	96.64
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	96.53
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.53
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.49
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	96.32
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.23
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.03
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	96.0
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	95.61
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	95.3
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	95.04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	94.7
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	94.66
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	93.0
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	92.95
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	92.24
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	91.36
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	90.03
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	89.88
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	89.76
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	89.52
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	87.67
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	85.2
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	84.19

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.95  E-value=7.5e-27  Score=230.92  Aligned_cols=288  Identities=18%  Similarity=0.155  Sum_probs=219.6

Q ss_pred             CcchhHHHHHHHhcccch-hhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhc
Q psy12638         44 PKSKREGRQDSRKLSVYH-VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        44 ~~~~~~A~~~L~~LSi~~-enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      +..|..|+.+|.+++... ++|..+.+.|+||+|+++|.+++++++..|+.+|.||+.+ +++|..|++.|+||+|+++|
T Consensus        16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL   95 (457)
T 1xm9_A           16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL   95 (457)
T ss_dssp             THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence            456789999999999754 5788999999999999999999999999999999999997 89999999999999999999


Q ss_pred             c-C--CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhcc-------CC--------CCchHHHHHHHHHHHccCc
Q psy12638        122 E-E--GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLV-------EQ--------DDETDNVLVALCINLALNS  183 (334)
Q Consensus       122 ~-~--~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~-------~~--------~~~~~~~~~~ll~nLs~~~  183 (334)
                      + +  ++.++.|+.+|+|||.++++|..+.+ |++|+|+++|..       ++        +..+...+...+.||+.++
T Consensus        96 ~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~  174 (457)
T 1xm9_A           96 RRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD  174 (457)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCH
Confidence            7 4  46789999999999999999999999 999999999931       11        1233336778899999999


Q ss_pred             chHHHHHhc-CchHHHHHHHhcC------ChHH---HHHHHHHHhcCC--------------------------------
Q psy12638        184 RNAELMLKN-RQLELLMIQAFTQ------KNIL---LLKVIRNMSIHS--------------------------------  221 (334)
Q Consensus       184 ~n~~~i~~~-~gl~~Lv~~l~~~------~d~~---~~k~l~nLa~~~--------------------------------  221 (334)
                      ++++.|.+. |++++|+.++.++      ++..   .+.+++|++...                                
T Consensus       175 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (457)
T 1xm9_A          175 AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKS  254 (457)
T ss_dssp             HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccc
Confidence            999999997 9999999998752      2222   355688886310                                


Q ss_pred             -------------------Cchhhh--hhhHHHHHHHhhcCCcc------------------c---h----hHHhhcHH-
Q psy12638        222 -------------------NVKHYF--VDYIGDIANCVQKEKDE------------------N---I----KLECLGTL-  254 (334)
Q Consensus       222 -------------------~~~~~f--~~~i~~L~~~l~~~~~~------------------~---~----~ve~Lg~l-  254 (334)
                                         ...+.+  .+.++.|+.++.+++..                  +   .    .+.--|.+ 
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~  334 (457)
T 1xm9_A          255 DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP  334 (457)
T ss_dssp             -----------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHH
T ss_pred             hhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCch
Confidence                               011111  35566666655433210                  0   0    01001111 


Q ss_pred             ---------------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccC----CchHHHHHHHHHHHHHcCchhhHH
Q psy12638        255 ---------------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQE----DDEIVLQILYVFYQICRHASCQNY  315 (334)
Q Consensus       255 ---------------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~----dde~vlqi~~~l~~l~~~~~~~~~  315 (334)
                                     +|+.+|++++.+++.+..+.+ |+||+|+++|..+..    +++++..++.+++.++.+++....
T Consensus       335 ~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~  413 (457)
T 1xm9_A          335 QIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAK  413 (457)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHH
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence                           689999999999888877765 679999999986432    357888999999999877664334


Q ss_pred             HhhcCCcHHHHHHhhhcC
Q psy12638        316 LIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       316 i~~~~~i~~~Li~LL~d~  333 (334)
                      .+.+.+.+..|++|++++
T Consensus       414 ~i~~~g~l~~L~~L~~~~  431 (457)
T 1xm9_A          414 QYFSSSMLNNIINLCRSS  431 (457)
T ss_dssp             HHCCHHHHHHHHHHHHCT
T ss_pred             HHHHcCCHHHHHHHHcCC
Confidence            444456666999999876

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=2.2e-27  Score=227.82  Aligned_cols=260  Identities=16%  Similarity=0.185  Sum_probs=214.6

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccC-----------CChhHHHHHHHHHHhhcCCh-hHHHHHHh-c
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI-----------EDSNLQSSTLKLLFNLSFDT-NLREKIIK-I  111 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~-----------~~~~l~~~al~~L~NLS~d~-~~r~~iv~-~  111 (334)
                      .++..|+.+|.|+|.+++||..|.+.|++++|+.+|.+           ++..++..|+.+|.||++++ ++|..+.. .
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            56669999999999999999999999999999999953           24679999999999999875 58888865 5


Q ss_pred             CChHHHHHhccC--CchHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchH
Q psy12638        112 GFLPKLVSLLEE--GKHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNA  186 (334)
Q Consensus       112 g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~  186 (334)
                      |+||+||.+|++  ++.++.|+.+|.|||..  +++|..|.+.|+||+|+++|.+..+..+.+.++.++.||+. +++++
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            669999999964  56799999999999974  68999999999999999987554566776777789999998 77899


Q ss_pred             HHHH-hcCchHHHHHHHhcCCh----HH---HHHHHHHHhc----CCCchhhh--hhhHHHHHHHhhcCCccchhHHhhc
Q psy12638        187 ELML-KNRQLELLMIQAFTQKN----IL---LLKVIRNMSI----HSNVKHYF--VDYIGDIANCVQKEKDENIKLECLG  252 (334)
Q Consensus       187 ~~i~-~~~gl~~Lv~~l~~~~d----~~---~~k~l~nLa~----~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg  252 (334)
                      ..|+ ..|++++|++++.++.+    .+   +..+++|+|.    ++..++.+  .++++.|++++.+++ .+.. +   
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~-~---  281 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIV-S---  281 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHH-H---
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHH-H---
Confidence            9998 78999999999986654    23   3567999996    44455554  478999999987544 2222 2   


Q ss_pred             HHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhh
Q psy12638        253 TLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQ  313 (334)
Q Consensus       253 ~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~  313 (334)
                        +|+.+|++++. +++.++.+.+.|+||+|+++|++  .++++.-.++.++..|+.+++.+
T Consensus       282 --~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          282 --NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             --HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             --HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHHH
Confidence              36778899995 78889999999999999999985  45688888999999999887754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.95  E-value=1.3e-26  Score=234.77  Aligned_cols=290  Identities=16%  Similarity=0.164  Sum_probs=221.4

Q ss_pred             cccCcchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHH
Q psy12638         41 LIVPKSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKL  117 (334)
Q Consensus        41 ~~~~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~L  117 (334)
                      ..-+..|.+|+.+|.+++. ..+||..+.+.|+||+|+++|.+++.++++.|+.+|.|||.+  +++|..|++.|+||+|
T Consensus        59 s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~L  138 (584)
T 3l6x_A           59 FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL  138 (584)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHH
Confidence            3344667799999999996 788999999999999999999999999999999999999983  8999999999999999


Q ss_pred             HHhccC---CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhc-----------------cCCCCchHHHHHHHHH
Q psy12638        118 VSLLEE---GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL-----------------VEQDDETDNVLVALCI  177 (334)
Q Consensus       118 v~lL~~---~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~-----------------~~~~~~~~~~~~~ll~  177 (334)
                      |++|++   ++.++.|+.+|++||.++++|..|.+ ++||+|++++.                 +.+++.+...+..++.
T Consensus       139 V~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~  217 (584)
T 3l6x_A          139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLR  217 (584)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHH
Confidence            999963   35689999999999999999999995 68999999882                 1123466667778999


Q ss_pred             HHccCcc-hHHHHHhcCc-hHHHHHHHhcC------ChHH---HHHHHHHHhcCCC----c-------------------
Q psy12638        178 NLALNSR-NAELMLKNRQ-LELLMIQAFTQ------KNIL---LLKVIRNMSIHSN----V-------------------  223 (334)
Q Consensus       178 nLs~~~~-n~~~i~~~~g-l~~Lv~~l~~~------~d~~---~~k~l~nLa~~~~----~-------------------  223 (334)
                      |||.+.+ +++.|.+.+| +++||..+.+.      ++..   .+.+++|||..-.    .                   
T Consensus       218 NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~  297 (584)
T 3l6x_A          218 NVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSP  297 (584)
T ss_dssp             HHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CC
T ss_pred             HHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccC
Confidence            9998765 5999998655 46999987642      2332   4667899887610    0                   


Q ss_pred             --hhh--h-hhhHHHHHHHhhcCCccchhHH---------------------------hhcHH-------------HHHH
Q psy12638        224 --KHY--F-VDYIGDIANCVQKEKDENIKLE---------------------------CLGTL-------------EVIN  258 (334)
Q Consensus       224 --~~~--f-~~~i~~L~~~l~~~~~~~~~ve---------------------------~Lg~l-------------eav~  258 (334)
                        ...  + .+.+..|+.++..+...+....                           .+-.+             .++.
T Consensus       298 ~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~  377 (584)
T 3l6x_A          298 ARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG  377 (584)
T ss_dssp             CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             chhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence              000  1 2456666666643321111100                           01111             5888


Q ss_pred             HHHHhcCCcchHHHhhhCCchHHHHHHhccccC------CchHHHHHHHHHHHHHcC-chhhHHHhhcCCcHHHHHHhhh
Q psy12638        259 FIGTAASDPISAEHFCKNSTVDLLINLLKEMQE------DDEIVLQILYVFYQICRH-ASCQNYLIKETDAPAYMIDLLN  331 (334)
Q Consensus       259 ~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~------dde~vlqi~~~l~~l~~~-~~~~~~i~~~~~i~~~Li~LL~  331 (334)
                      +|++++.++..+..+ ..|+||.|+++|.....      .++++..++.+++.++.. +..++.+....+++ .|++||+
T Consensus       378 aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~-~Lv~LL~  455 (584)
T 3l6x_A          378 ALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIE-KLVLINK  455 (584)
T ss_dssp             HHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH-HHHHHHT
T ss_pred             HHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChH-HHHHHHh
Confidence            999999988877777 56889999999986532      468888899999998754 55777777665555 9999998


Q ss_pred             cC
Q psy12638        332 DG  333 (334)
Q Consensus       332 d~  333 (334)
                      ++
T Consensus       456 s~  457 (584)
T 3l6x_A          456 SG  457 (584)
T ss_dssp             CS
T ss_pred             CC
Confidence            75

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=228.72  Aligned_cols=254  Identities=16%  Similarity=0.190  Sum_probs=210.7

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccC-----------CChhHHHHHHHHHHhhcCCh-hHHHHHHh-cCChH
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMI-----------EDSNLQSSTLKLLFNLSFDT-NLREKIIK-IGFLP  115 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~-----------~~~~l~~~al~~L~NLS~d~-~~r~~iv~-~g~Ip  115 (334)
                      +|+.+|.|+|.+++||..|.+.|++++|+++|.+           ++..++..|+.+|.||++++ ++|..+.. .|+||
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            8999999999999999999999999999999953           34678999999999999976 57777764 56699


Q ss_pred             HHHHhcc--CCchHHHHHHHHHHccC--ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHH
Q psy12638        116 KLVSLLE--EGKHQKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELML  190 (334)
Q Consensus       116 ~Lv~lL~--~~~~~~~al~~L~~LS~--~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~  190 (334)
                      +||.+|+  +++.++.|+.+|.+||.  ++++|..|.+.|+||+|+++|.+..+..+.+.++.++.||+. +++++..|+
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            9999996  45689999999999998  468999999999999999987655566777777789999998 889999998


Q ss_pred             -hcCchHHHHHHHhcCChH----H---HHHHHHHHhc----CCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHH
Q psy12638        191 -KNRQLELLMIQAFTQKNI----L---LLKVIRNMSI----HSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEV  256 (334)
Q Consensus       191 -~~~gl~~Lv~~l~~~~d~----~---~~k~l~nLa~----~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~lea  256 (334)
                       ..||+++|++++.++.+.    +   +..+++|+|.    ++..++.+  .++++.|+.++..++. +...      +|
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~-~v~~------~A  399 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL-TIVS------NA  399 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCH-HHHH------HH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCCh-HHHH------HH
Confidence             789999999999876542    3   3567999996    44445544  4889999999876542 2222      36


Q ss_pred             HHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638        257 INFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS  311 (334)
Q Consensus       257 v~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~  311 (334)
                      +.+|++++. +++.+..+.+.|+||+|+++|++  .++++.-.++.++..|+.+++
T Consensus       400 ~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          400 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCH
Confidence            778899994 78889999999999999999985  456888889999999998765

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.94  E-value=4.3e-26  Score=225.63  Aligned_cols=304  Identities=15%  Similarity=0.177  Sum_probs=231.3

Q ss_pred             cccccc---hhhhcccCCcceeeccc----CcchhHHHHHHHhccc-chhhHHHhHhCCcc----------hHHHhhccC
Q psy12638         21 TRNAGV---KAQRFDRGNCNCYGLIV----PKSKREGRQDSRKLSV-YHVNKEQMANLNLI----------EKLPRILMI   82 (334)
Q Consensus        21 ~~~~~~---~~~~~~r~~~~~~~~~~----~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I----------~~Lv~LL~~   82 (334)
                      +++.|+   .++.+.+.+.+-...+.    +..+.+|+.+|.++.. .++.+..-.+.|++          +.+++++.+
T Consensus        66 ~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (458)
T 3nmz_A           66 MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA  145 (458)
T ss_dssp             HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence            455555   45555543332222222    2556699999999986 67788888888888          667777876


Q ss_pred             CC--h------------hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-------------CCchHHHHHHHHH
Q psy12638         83 ED--S------------NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-------------EGKHQKIILQLLY  135 (334)
Q Consensus        83 ~~--~------------~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-------------~~~~~~~al~~L~  135 (334)
                      ..  .            +.+..|+.+|.|+|+|+++|..|++.|++|+|+.+|.             ++..+..|+.+|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~  225 (458)
T 3nmz_A          146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT  225 (458)
T ss_dssp             TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             hccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence            53  1            2345999999999999999999999999999999993             2346888999999


Q ss_pred             HccCCh-hhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHcc--CcchHHHHHhcCchHHHHHHHhcCChH-H-
Q psy12638        136 HLSIED-RVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLAL--NSRNAELMLKNRQLELLMIQAFTQKNI-L-  209 (334)
Q Consensus       136 ~LS~~~-~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~--~~~n~~~i~~~~gl~~Lv~~l~~~~d~-~-  209 (334)
                      ||+.++ .+|..+.. .|+||+|+++|.+ ++++++..+...+.||+.  +++++..|.+.||+++|++++.++.++ . 
T Consensus       226 nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          226 NLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             HHHTTCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             HHhCCCcccHHHHHHcCCcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence            999865 48888864 5669999999985 567777778788999997  468999999999999999987765444 3 


Q ss_pred             --HHHHHHHHhcCC-Cchhhh---hhhHHHHHHHhhcCCcc---chhHHhhcHHHHHHHHHHhc----CCcchHHHhhhC
Q psy12638        210 --LLKVIRNMSIHS-NVKHYF---VDYIGDIANCVQKEKDE---NIKLECLGTLEVINFIGTAA----SDPISAEHFCKN  276 (334)
Q Consensus       210 --~~k~l~nLa~~~-~~~~~f---~~~i~~L~~~l~~~~~~---~~~ve~Lg~leav~~lg~la----~~~~~~~~l~~~  276 (334)
                        ++.+++|||.+. .++..+   .++++.|++++...+..   +...+      ++.+|.+++    .+++.++.+.+.
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~------A~~aL~nLs~~~a~~~~~~~~i~~~  378 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES------GGGILRNVSSLIATNEDHRQILREN  378 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHH------HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHH------HHHHHHHHHhcccCCHHHHHHHHHc
Confidence              356899999954 455444   48999999998765432   12222      455667776    478888999999


Q ss_pred             CchHHHHHHhccccCCchHHHHHHHHHHHHHc-CchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        277 STVDLLINLLKEMQEDDEIVLQILYVFYQICR-HASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~-~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      |+||+|+++|+.  .+++++-+++.++..++. +++.++.+.+.+.++ .|++||++++
T Consensus       379 G~i~~Lv~LL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~-~Lv~LL~s~~  434 (458)
T 3nmz_A          379 NCLQTLLQHLKS--HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS-MLKNLIHSKH  434 (458)
T ss_dssp             THHHHHHHHSSC--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHH-HHHTTTTCSS
T ss_pred             ccHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH-HHHHHHhCCC
Confidence            999999999984  456789999999999994 566787777765455 9999998764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.93  E-value=2.9e-24  Score=212.85  Aligned_cols=281  Identities=15%  Similarity=0.153  Sum_probs=233.1

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE  123 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~  123 (334)
                      ..++.|+..|.+||..++|+..+.+.|++|+|++++.+++++++..|+.+|.||+.+ ++.+..+++.|+||.|++++++
T Consensus        75 ~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~  154 (529)
T 1jdh_A           75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  154 (529)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc
Confidence            356789999999999999999999999999999999999999999999999999997 5789999999999999999975


Q ss_pred             C--chHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638        124 G--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI  200 (334)
Q Consensus       124 ~--~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~  200 (334)
                      +  ..+..++..|.+++. ++++|..+.+.|+++.|++++.++..+.....+..++.||+.+++++..+.+.|++++|++
T Consensus       155 ~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~  234 (529)
T 1jdh_A          155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  234 (529)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence            4  457778889999987 4789999999999999999998765555555556788999999999999999999999999


Q ss_pred             HHhcCChHH---HHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhC
Q psy12638        201 QAFTQKNIL---LLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKN  276 (334)
Q Consensus       201 ~l~~~~d~~---~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~  276 (334)
                      .+.+++..+   +..+++|++.+.+......+.++.|++++...+ .+. .+     .++.+++.++.. ++.+..+.+.
T Consensus       235 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~-~~v-~~-----~a~~~L~~L~~~~~~~~~~~~~~  307 (529)
T 1jdh_A          235 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-INV-VT-----CAAGILSNLTCNNYKNKMMVCQV  307 (529)
T ss_dssp             TTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HHH-HH-----HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             HHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC-HHH-HH-----HHHHHHHHHhcCCHHHHHHHHHc
Confidence            987765443   366799999887554435688999999885433 222 22     267788999885 5688899999


Q ss_pred             CchHHHHHHhccccCCchHHHHHHHHHHHHHcCch----hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS----CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~----~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      |++|.|+++|....+++++...++.+++.++.+++    .+..+...++++ .|+++|++.
T Consensus       308 ~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~-~L~~lL~~~  367 (529)
T 1jdh_A          308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP-VVVKLLHPP  367 (529)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHH-HHHHTTSTT
T ss_pred             CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChh-HHHHHhccc
Confidence            99999999998766667899999999999987643    355666655555 999999875

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.92  E-value=7.9e-25  Score=210.08  Aligned_cols=245  Identities=18%  Similarity=0.208  Sum_probs=196.0

Q ss_pred             ccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc-------------CCchHHHHHHHHHHccCCh-hhhh
Q psy12638         80 LMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE-------------EGKHQKIILQLLYHLSIED-RVKA  145 (334)
Q Consensus        80 L~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~-------------~~~~~~~al~~L~~LS~~~-~~r~  145 (334)
                      .+.+..+.++.|+.+|.|+|+|+++|..|++.|++|+|+.+|.             ++..+..|+.+|.||+..+ ++|.
T Consensus        41 ~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~  120 (354)
T 3nmw_A           41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA  120 (354)
T ss_dssp             CCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            5566668888999999999999999999999999999999994             2456889999999999865 5899


Q ss_pred             Hhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHccC--cchHHHHHhcCchHHHHHHHhcCChH-H---HHHHHHHHh
Q psy12638        146 MFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLALN--SRNAELMLKNRQLELLMIQAFTQKNI-L---LLKVIRNMS  218 (334)
Q Consensus       146 ~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~--~~n~~~i~~~~gl~~Lv~~l~~~~d~-~---~~k~l~nLa  218 (334)
                      .|.. .|+||+|+++|.+ ++++++..++..+.||+..  ++++..|.+.||+++|++++.++.++ .   +..+++|||
T Consensus       121 ~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs  199 (354)
T 3nmw_A          121 TLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS  199 (354)
T ss_dssp             HHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8865 4569999999985 5677777787889999974  68999999999999999987665444 3   356899999


Q ss_pred             cCC-Cchhhh---hhhHHHHHHHhhcCCcc---chhHHhhcHHHHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhc
Q psy12638        219 IHS-NVKHYF---VDYIGDIANCVQKEKDE---NIKLECLGTLEVINFIGTAAS----DPISAEHFCKNSTVDLLINLLK  287 (334)
Q Consensus       219 ~~~-~~~~~f---~~~i~~L~~~l~~~~~~---~~~ve~Lg~leav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~  287 (334)
                      .+. .++..+   .++++.|++++...+..   +...+      ++.+|.+++.    +++.++.+.+.|++|+|+++|+
T Consensus       200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~------A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~  273 (354)
T 3nmw_A          200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES------GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK  273 (354)
T ss_dssp             TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHH------HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT
T ss_pred             ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHH------HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc
Confidence            965 444444   48999999998765432   12222      4555677764    7888999999999999999998


Q ss_pred             cccCCchHHHHHHHHHHHHHc-CchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        288 EMQEDDEIVLQILYVFYQICR-HASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       288 ~~~~dde~vlqi~~~l~~l~~-~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      .  .+++++-+++.++..++. +++.++.+.+. +++..|++||++++
T Consensus       274 ~--~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-G~i~~Lv~LL~s~~  318 (354)
T 3nmw_A          274 S--HSLTIVSNACGTLWNLSARNPKDQEALWDM-GAVSMLKNLIHSKH  318 (354)
T ss_dssp             C--SCHHHHHHHHHHHHHHTSSCHHHHHHHHHT-THHHHHHTTTTCSS
T ss_pred             C--CChHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHhCCC
Confidence            4  456789999999999995 56677777765 55559999998764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.92  E-value=8e-24  Score=221.15  Aligned_cols=278  Identities=15%  Similarity=0.119  Sum_probs=220.0

Q ss_pred             chhHHHHHHHhcccch------------------------------hhH---HHhHhCCcchHHHhhccCCChhHHHHHH
Q psy12638         46 SKREGRQDSRKLSVYH------------------------------VNK---EQMANLNLIEKLPRILMIEDSNLQSSTL   92 (334)
Q Consensus        46 ~~~~A~~~L~~LSi~~------------------------------enk---~~m~~~g~I~~Lv~LL~~~~~~l~~~al   92 (334)
                      -+..|++.|.+++...                              .++   ..+.+.|+||+|++++.++++.+++.|+
T Consensus       437 i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa  516 (810)
T 3now_A          437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIA  516 (810)
T ss_dssp             GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHH
Confidence            3458899999999743                              234   6789999999999999999999999999


Q ss_pred             HHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhc---cCcHHHHHHHhccCCCCc
Q psy12638         93 KLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAY---TNCMSLLMNMLLVEQDDE  167 (334)
Q Consensus        93 ~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~---t~~i~~Lv~LL~~~~~~~  167 (334)
                      .+|.|||.|+++|..+++.|+||+|+.+|+  ++..++.|+.+|.+|+.+......|..   .|++|+|+++|.++....
T Consensus       517 ~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l  596 (810)
T 3now_A          517 RVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTAL  596 (810)
T ss_dssp             HHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHH
Confidence            999999999999999999999999999995  446789999999999876544554432   469999999997532223


Q ss_pred             hHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHhcCCCchhhhh---hhHHHHHHHhhc
Q psy12638        168 TDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHYFV---DYIGDIANCVQK  240 (334)
Q Consensus       168 ~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~f~---~~i~~L~~~l~~  240 (334)
                      .+.+++..+.||+.. +++++.|+++||+++|+.++.+++..+   +..++.|++.+++....|.   +.++.|+.++..
T Consensus       597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s  676 (810)
T 3now_A          597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED  676 (810)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC
Confidence            334677788999876 578999999999999999998776544   4778999999877655553   578888887755


Q ss_pred             CCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhh-CCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHh
Q psy12638        241 EKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCK-NSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLI  317 (334)
Q Consensus       241 ~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~-~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~  317 (334)
                      .+ .+.. +     +|+.+|+.++. ++...+.+.+ .|++|+|+++|+  .+|+++.-.++.+++.++.+++ .++.+.
T Consensus       677 ~d-~~vq-~-----~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~--s~d~~vq~~A~~aL~NL~~~s~e~~~~l~  747 (810)
T 3now_A          677 ED-EETA-T-----ACAGALAIITSVSVKCCEKILAIASWLDILHTLIA--NPSPAVQHRGIVIILNMINAGEEIAKKLF  747 (810)
T ss_dssp             SS-HHHH-H-----HHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CC-HHHH-H-----HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC--CCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            33 2221 1     36788899988 6666666666 899999999998  5678999999999999998655 565566


Q ss_pred             hcCCcHHHHHHhhhcC
Q psy12638        318 KETDAPAYMIDLLNDG  333 (334)
Q Consensus       318 ~~~~i~~~Li~LL~d~  333 (334)
                      + .++..+|++||++.
T Consensus       748 e-~G~i~~L~~LL~~~  762 (810)
T 3now_A          748 E-TDIMELLSGLGQLP  762 (810)
T ss_dssp             T-STHHHHHTTSCCCT
T ss_pred             H-CCCHHHHHHHHhCc
Confidence            5 46666999999653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=3.4e-23  Score=212.36  Aligned_cols=281  Identities=14%  Similarity=0.137  Sum_probs=230.7

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE  123 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~  123 (334)
                      ..|+.|+.+|.+||...+|+..+.+.|+++.|+++|.++++.++..|+.+|.||+.+ ++.+..+++.|+||.|+++|++
T Consensus        72 ~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~  151 (644)
T 2z6h_A           72 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  151 (644)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc
Confidence            456789999999999999999999999999999999999999999999999999987 5788899999999999999975


Q ss_pred             C--chHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638        124 G--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI  200 (334)
Q Consensus       124 ~--~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~  200 (334)
                      +  ..+..++.+|.+|+. ++++|..+.+.|+++.|++++.+...+.....+..++.||+.+++++..+++.|+++.|+.
T Consensus       152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~  231 (644)
T 2z6h_A          152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  231 (644)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence            4  456667779999996 7899999999999999999998765555555667889999999999999999999999999


Q ss_pred             HHhcCChHH---HHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhC
Q psy12638        201 QAFTQKNIL---LLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKN  276 (334)
Q Consensus       201 ~l~~~~d~~---~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~  276 (334)
                      .+.+++..+   ++.+++|++.+.+......+.++.|++++...+ .+ ..+     .++.+++.++.. ++.+..+.+.
T Consensus       232 ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d-~~-v~~-----~a~~aL~~L~~~~~~~~~~v~~~  304 (644)
T 2z6h_A          232 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-IN-VVT-----CAAGILSNLTCNNYKNKMMVCQV  304 (644)
T ss_dssp             TTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC-HH-HHH-----HHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC-HH-HHH-----HHHHHHHHHHcCCHHHHHHHHHc
Confidence            987765554   366799999876543335688999999886433 22 222     267788999885 5678889999


Q ss_pred             CchHHHHHHhccccCCchHHHHHHHHHHHHHcCch----hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS----CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~----~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      |++|.|+++|....+.+++...++.+++.++.+.+    .+..+... +.+..|+++|++.
T Consensus       305 g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~-~~l~~L~~lL~~~  364 (644)
T 2z6h_A          305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH-YGLPVVVKLLHPP  364 (644)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT-THHHHHHHTTSTT
T ss_pred             CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHc-cChHHHHHHhCcc
Confidence            99999999998655446899999999999987543    34435544 4455999999864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.91  E-value=3.5e-23  Score=204.60  Aligned_cols=257  Identities=17%  Similarity=0.160  Sum_probs=203.3

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCC-hhhhhHh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIE-DRVKAMF  147 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~-~~~r~~i  147 (334)
                      .+|.|+++|.+++++++..|+.+|.||+.+ +.+|..+++.|+||+||++|++  +..+..|+..|.|||.+ +++|..|
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            589999999999999999999999999986 4779899999999999999964  45789999999999987 8999999


Q ss_pred             hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc--------C-------ChH----
Q psy12638        148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT--------Q-------KNI----  208 (334)
Q Consensus       148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~--------~-------~d~----  208 (334)
                      .+.|+||+|+++|...++.+++..++..+.||+.+++++..+.+ |++|+|++++..        +       .++    
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999998445678878888899999999999999999 999999999842        1       111    


Q ss_pred             HHHHHHHHHhcCCCchhhhh---hhHHHHHHHhhcC-----Cccchh---------------------------------
Q psy12638        209 LLLKVIRNMSIHSNVKHYFV---DYIGDIANCVQKE-----KDENIK---------------------------------  247 (334)
Q Consensus       209 ~~~k~l~nLa~~~~~~~~f~---~~i~~L~~~l~~~-----~~~~~~---------------------------------  247 (334)
                      -+..+++|+|.++.+++.+.   +.++.|+.++.++     .+.+..                                 
T Consensus       162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            34668999999855555543   8899998887641     011100                                 


Q ss_pred             ----------------------------------HHhh----------cHH----------HHHHHHHHhcCC-cch---
Q psy12638        248 ----------------------------------LECL----------GTL----------EVINFIGTAASD-PIS---  269 (334)
Q Consensus       248 ----------------------------------ve~L----------g~l----------eav~~lg~la~~-~~~---  269 (334)
                                                        ++.+          ..+          .++.+|++++.. ..+   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                                              0000          001          367889999873 222   


Q ss_pred             --HHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcC
Q psy12638        270 --AEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       270 --~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                        +..+.+.|++|+|+++|+.  .+++++-.++.++..++.++..++.+.. ..+| .|+++|.+.
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~--~~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~-~Lv~lL~~~  383 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQS--GNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFP-EVTRLLTSH  383 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHH-HHHHTTTSC
T ss_pred             HHHHHHHHcCCchHHHHHHhC--CCHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhH-HHHHhccCC
Confidence              3345678999999999984  5679999999999999998888766654 4666 999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.91  E-value=1.6e-23  Score=218.92  Aligned_cols=281  Identities=12%  Similarity=0.098  Sum_probs=226.4

Q ss_pred             CcchhHHHHHHHhcccchhhHHHhHh-CCcchHHHhhccCCChhHHHHHHHHHHhhcCCh--------------------
Q psy12638         44 PKSKREGRQDSRKLSVYHVNKEQMAN-LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--------------------  102 (334)
Q Consensus        44 ~~~~~~A~~~L~~LSi~~enk~~m~~-~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--------------------  102 (334)
                      +..++.|+..|..||..+++|..+.. .|+||+|+++|++++..++..|+.+|.||+.+.                    
T Consensus       393 ~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v  472 (810)
T 3now_A          393 KDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHI  472 (810)
T ss_dssp             SSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSC
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccC
Confidence            35688999999999999999999986 799999999999999999999999999999854                    


Q ss_pred             ----------hHH---HHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCc
Q psy12638        103 ----------NLR---EKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDE  167 (334)
Q Consensus       103 ----------~~r---~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~  167 (334)
                                .++   ..+++.|+||.|+.+|+  ++..++.|+.+|+|||.++++|..+.+.|++|+|+.+|.++ ...
T Consensus       473 ~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~  551 (810)
T 3now_A          473 PEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-TEK  551 (810)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-CHH
T ss_pred             ccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-CHH
Confidence                      234   78899999999999996  45689999999999999999999999999999999999864 456


Q ss_pred             hHHHHHHHHHHHccCcchHHHH---HhcCchHHHHHHHhcCChHH----HHHHHHHHhcCCCc-hhhh--hhhHHHHHHH
Q psy12638        168 TDNVLVALCINLALNSRNAELM---LKNRQLELLMIQAFTQKNIL----LLKVIRNMSIHSNV-KHYF--VDYIGDIANC  237 (334)
Q Consensus       168 ~~~~~~~ll~nLs~~~~n~~~i---~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~-~~~f--~~~i~~L~~~  237 (334)
                      .++.++..+.||+.+......+   ...|++++|++++.++.+..    ++.+++||+.+++. ++.+  .+++++|+.+
T Consensus       552 ~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~L  631 (810)
T 3now_A          552 GKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYY  631 (810)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence            6667777888987543333222   11259999999886543332    46789999998643 4443  4789999998


Q ss_pred             hhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhh-CCchHHHHHHhccccCCchHHHHHHHHHHHHHc-CchhhHH
Q psy12638        238 VQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCK-NSTVDLLINLLKEMQEDDEIVLQILYVFYQICR-HASCQNY  315 (334)
Q Consensus       238 l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~-~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~-~~~~~~~  315 (334)
                      +.+.+  ..+.+     .|+.++++++.+++.+..+.+ .|.+|.|+.++.+  +|.++.-+++.++..++. ++..++.
T Consensus       632 L~s~~--~~Vq~-----~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~s~~~~~~  702 (810)
T 3now_A          632 LMEDH--LYLTR-----AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCED--EDEETATACAGALAIITSVSVKCCEK  702 (810)
T ss_dssp             HHSCC--TTHHH-----HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HcCCC--HHHHH-----HHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            86543  22222     277888999999888887775 6899999999974  667899999999999998 5667777


Q ss_pred             HhhcCCcHHHHHHhhhcCC
Q psy12638        316 LIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       316 i~~~~~i~~~Li~LL~d~n  334 (334)
                      ++...+.+.+|++||++.+
T Consensus       703 ii~~~g~I~~Lv~LL~s~d  721 (810)
T 3now_A          703 ILAIASWLDILHTLIANPS  721 (810)
T ss_dssp             HHTSTTHHHHHHHHHTCSS
T ss_pred             HHHHcCCHHHHHHHHCCCC
Confidence            8874455559999998764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.91  E-value=3.7e-23  Score=209.58  Aligned_cols=264  Identities=15%  Similarity=0.181  Sum_probs=205.8

Q ss_pred             HHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccC--
Q psy12638         65 EQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSI--  139 (334)
Q Consensus        65 ~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~--  139 (334)
                      ..-.+.+.||.|+++|.+++++++..|+..|.||++ ++++|..+++.|+||+||++|++  +..++.|+..|.|||.  
T Consensus        42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred             CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence            445567899999999999999999999999999997 68999999999999999999964  5679999999999998  


Q ss_pred             ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc---------------
Q psy12638        140 EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT---------------  204 (334)
Q Consensus       140 ~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~---------------  204 (334)
                      ++++|..|.+.|+||+|+++|.++.+..++..+..++.|||.+++++..|++ +|+++|++++..               
T Consensus       122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~  200 (584)
T 3l6x_A          122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKP  200 (584)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC---------
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccc
Confidence            3899999999999999999998755666777777899999999999999997 489999998731               


Q ss_pred             --CChHH----HHHHHHHHhcCCCc-hhhh---hhhHHHHHHHhhcC----C-ccch-----------------------
Q psy12638        205 --QKNIL----LLKVIRNMSIHSNV-KHYF---VDYIGDIANCVQKE----K-DENI-----------------------  246 (334)
Q Consensus       205 --~~d~~----~~k~l~nLa~~~~~-~~~f---~~~i~~L~~~l~~~----~-~~~~-----------------------  246 (334)
                        ..++.    +..+++|||.++++ ++.+   .+.++.|++++..+    + ..+.                       
T Consensus       201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~  280 (584)
T 3l6x_A          201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE  280 (584)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence              11222    36689999998765 5543   35566777766431    0 0000                       


Q ss_pred             -------------------hHHhh----------cHH----------HHHHHHHHhcCCc-----chHHHhhhCCchHHH
Q psy12638        247 -------------------KLECL----------GTL----------EVINFIGTAASDP-----ISAEHFCKNSTVDLL  282 (334)
Q Consensus       247 -------------------~ve~L----------g~l----------eav~~lg~la~~~-----~~~~~l~~~g~I~~L  282 (334)
                                         .++.|          ..+          .|+.+|..++...     ..+..+.++|++|.|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L  360 (584)
T 3l6x_A          281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI  360 (584)
T ss_dssp             C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred             hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence                               01111          111          4677898997632     234466778899999


Q ss_pred             HHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcC
Q psy12638        283 INLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       283 v~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      ++||..  .+++++..++.++..|+.++..+..| ...++| .||+||.+.
T Consensus       361 v~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip-~LV~LL~~~  407 (584)
T 3l6x_A          361 ADLLTN--EHERVVKAASGALRNLAVDARNKELI-GKHAIP-NLVKNLPGG  407 (584)
T ss_dssp             HHGGGC--SCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHH-HHHHTSSSS
T ss_pred             HHHHcC--CCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHH-HHHHHhcCC
Confidence            999984  45689999999999999999988766 444555 999999764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.90  E-value=2.2e-22  Score=201.26  Aligned_cols=279  Identities=14%  Similarity=0.133  Sum_probs=219.3

Q ss_pred             cchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      .-|.+|+++|.+++. .++++..+++.|+||.|+++|.+++.++++.|+.+|.||+.| ++.|..+++.|++|+|+.+|.
T Consensus       116 ~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~  195 (510)
T 3ul1_B          116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA  195 (510)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence            446799999999965 678999999999999999999999999999999999999998 688999999999999999996


Q ss_pred             CCc-------hHHHHHHHHHHccCChhhhhHhh-ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch-HHHHHhcC
Q psy12638        123 EGK-------HQKIILQLLYHLSIEDRVKAMFA-YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN-AELMLKNR  193 (334)
Q Consensus       123 ~~~-------~~~~al~~L~~LS~~~~~r~~i~-~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n-~~~i~~~~  193 (334)
                      ++.       ....++..|.+++.....+..+. ..+++|.|++++.+ +++++...+...+.+|+.++.+ .+.+.+.|
T Consensus       196 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g  274 (510)
T 3ul1_B          196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKG  274 (510)
T ss_dssp             SSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred             hccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhchhhhHHHHHhcc
Confidence            543       25568888999988765554443 36789999999975 5667777777788899876654 56677889


Q ss_pred             chHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-C
Q psy12638        194 QLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-D  266 (334)
Q Consensus       194 gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~  266 (334)
                      +++.|++++.+.+..+   .+++++|++.+++.... +  .++++.|+.++.+.+ .+. .+     +++.++++++. +
T Consensus       275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~v-~~-----~A~~aL~nl~a~~  347 (510)
T 3ul1_B          275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNI-QK-----EATWTMSNITAGR  347 (510)
T ss_dssp             CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS-HHH-HH-----HHHHHHHHHTTSC
T ss_pred             cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC-HHH-HH-----HHHHHHHHHHcCc
Confidence            9999999988776665   36778999887655433 2  366676777665433 122 11     37788899987 5


Q ss_pred             cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc--hhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        267 PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA--SCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       267 ~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~--~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ++....+.+.|++|+|+++|+  ..+.++.-.+++++..++.+.  +.+..+++. +++..|++||++++
T Consensus       348 ~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~-g~i~~L~~LL~~~d  414 (510)
T 3ul1_B          348 QDQIQQVVNHGLVPFLVGVLS--KADFKTQKEAAWAITNYTSGGTVEQIVYLVHC-GIIEPLMNLLSAKD  414 (510)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT-TCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcCCC
Confidence            667788899999999999998  456789999999999998743  344556654 55559999998764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.90  E-value=5.2e-22  Score=199.26  Aligned_cols=279  Identities=13%  Similarity=0.124  Sum_probs=220.5

Q ss_pred             cchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      .-|.+|+.+|.+++. .++++..+.+.|+||+|+++|.+++.++++.|+.+|.|||.| +++|..+++.|++|+|+.+|.
T Consensus       135 ~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~  214 (529)
T 3tpo_A          135 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA  214 (529)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence            356689999999986 567889999999999999999999999999999999999997 699999999999999999996


Q ss_pred             CCc-------hHHHHHHHHHHccCChhhhhHhh-ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-chHHHHHhcC
Q psy12638        123 EGK-------HQKIILQLLYHLSIEDRVKAMFA-YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-RNAELMLKNR  193 (334)
Q Consensus       123 ~~~-------~~~~al~~L~~LS~~~~~r~~i~-~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~  193 (334)
                      .+.       ....++..|.+++.+......+. ..+++|.|+.++.+ +++++...+...+.+++.++ ...+.+.+.|
T Consensus       215 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g  293 (529)
T 3tpo_A          215 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKG  293 (529)
T ss_dssp             SSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT
T ss_pred             ccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc
Confidence            443       35668888999998765554443 46789999999975 56677777777778887665 4566777899


Q ss_pred             chHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-C
Q psy12638        194 QLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-D  266 (334)
Q Consensus       194 gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~  266 (334)
                      +++.|+.++.+.+..+   ++.+++|++.+++.... +  .++++.|+.++.+.+ .+...      +++.++++++. +
T Consensus       294 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~i~~------~a~~aL~nl~~~~  366 (529)
T 3tpo_A          294 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQK------EATWTMSNITAGR  366 (529)
T ss_dssp             CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHH------HHHHHHHHHHTSC
T ss_pred             chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC-HHHHH------HHHHHHHHHhccc
Confidence            9999999987766654   47789999987765433 2  477888888876543 22221      36778899987 5


Q ss_pred             cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc--hhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        267 PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA--SCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       267 ~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~--~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ++....+.+.|++|+|+.+|+  ..+.++...+++++..++.+.  +....+++. +++..|++||++++
T Consensus       367 ~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~-g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          367 QDQIQQVVNHGLVPFLVGVLS--KADFKTQKAAAWAITNYTSGGTVEQIVYLVHC-GIIEPLMNLLSAKD  433 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT-TCHHHHHHGGGCSC
T ss_pred             HHHHHHHHhcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC-cCHHHHHHHhcCCC
Confidence            667778899999999999997  456789999999999998643  344556654 55559999998764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.89  E-value=7.3e-22  Score=196.98  Aligned_cols=286  Identities=14%  Similarity=0.123  Sum_probs=220.8

Q ss_pred             cchhHHHHHHHhcc-cch-hhHHHhHhCCcchHHHhhccCCC-hhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHh
Q psy12638         45 KSKREGRQDSRKLS-VYH-VNKEQMANLNLIEKLPRILMIED-SNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSL  120 (334)
Q Consensus        45 ~~~~~A~~~L~~LS-i~~-enk~~m~~~g~I~~Lv~LL~~~~-~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~l  120 (334)
                      ..|..|+..|.++. ... +++..+.+.|++|.|+++|.+++ +.++..|+.+|.|++.+ ++.+..+++.|+||+|+.+
T Consensus        89 ~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  168 (528)
T 4b8j_A           89 NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL  168 (528)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH
Confidence            34558899998884 443 68899999999999999999987 89999999999999997 7999999999999999999


Q ss_pred             ccC--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHH
Q psy12638        121 LEE--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLEL  197 (334)
Q Consensus       121 L~~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~  197 (334)
                      |++  +..+..|+.+|.+|+.+ +.+|..+.+.|++|+|+.++...++..+...++..+.||+.+..+.......++++.
T Consensus       169 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~  248 (528)
T 4b8j_A          169 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA  248 (528)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence            964  46789999999999976 678999999999999999996556667777777888899877544444445678888


Q ss_pred             HHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHH-----------------
Q psy12638        198 LMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTL-----------------  254 (334)
Q Consensus       198 Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~l-----------------  254 (334)
                      |+.++.+++..+   ++.++.+++.+.+.... +  .+.++.|+.++...+ .+....+++++                 
T Consensus       249 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~  327 (528)
T 4b8j_A          249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS-PSVLIPALRTVGNIVTGDDAQTQCIIDH  327 (528)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC-hhHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            888876655444   35568888877654422 2  367777777765432 11111111111                 


Q ss_pred             --------------------HHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC--ch
Q psy12638        255 --------------------EVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH--AS  311 (334)
Q Consensus       255 --------------------eav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~--~~  311 (334)
                                          +|+.++++++. +++....+.+.|++|.|+++|..+  +.++..+++.+++.++.+  ++
T Consensus       328 ~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~  405 (528)
T 4b8j_A          328 QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHD  405 (528)
T ss_dssp             THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHH
Confidence                                67888999987 555666788899999999999853  778999999999999987  45


Q ss_pred             hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        312 CQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       312 ~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      .+..+.. .+++..|+++|++.+
T Consensus       406 ~~~~l~~-~~~i~~L~~lL~~~d  427 (528)
T 4b8j_A          406 QIKYLVS-EGCIKPLCDLLICPD  427 (528)
T ss_dssp             HHHHHHH-TTCHHHHHHGGGCSC
T ss_pred             HHHHHHH-CCCHHHHHHHHcCCC
Confidence            6666665 456669999998754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=5e-22  Score=208.49  Aligned_cols=281  Identities=15%  Similarity=0.142  Sum_probs=229.9

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE  123 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~  123 (334)
                      ..|+.|+.+|.+||...+|+..+.+.|+|+.|+++|.++++.++..|+.+|.||+.+ ++.+..+++.|+||.|+++|++
T Consensus       208 ~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~  287 (780)
T 2z6g_A          208 ETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  287 (780)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc
Confidence            467799999999999999999999999999999999999999999999999999987 5888888899999999999975


Q ss_pred             C--chHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638        124 G--KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI  200 (334)
Q Consensus       124 ~--~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~  200 (334)
                      +  ..+..++..|.+|+. ++++|..|.+.|+++.|++++.++..+.....+..++.||+.+++++..+++.|+++.|+.
T Consensus       288 ~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~  367 (780)
T 2z6g_A          288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  367 (780)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGG
T ss_pred             CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHH
Confidence            4  457778889999986 5889999999999999999998755444444556888999999999999999999999999


Q ss_pred             HHhcCChHH---HHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhC
Q psy12638        201 QAFTQKNIL---LLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKN  276 (334)
Q Consensus       201 ~l~~~~d~~---~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~  276 (334)
                      ++.+++...   ++.++++++........+.+.++.|++++...+ .+ +.+     .++.+++.++.. ++.+..+.+.
T Consensus       368 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d-~~-vr~-----~A~~aL~~L~~~~~~~~~~i~~~  440 (780)
T 2z6g_A          368 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD-IN-VVT-----CAAGILSNLTCNNYKNKMMVCQV  440 (780)
T ss_dssp             GTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC-HH-HHH-----HHHHHHHHHTSSCHHHHHHHHTT
T ss_pred             HHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC-HH-HHH-----HHHHHHHHHHhCCHHHHHHHHHC
Confidence            987765544   366789999876543335678899999886433 22 222     267888999885 4677788999


Q ss_pred             CchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh----hHHHhhcCCcHHHHHHhhhcC
Q psy12638        277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC----QNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~----~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      |++|.|+++|....+.+++...++.+++.++.+.+.    +..+....+++ .|+++|++.
T Consensus       441 g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~-~L~~lL~~~  500 (780)
T 2z6g_A          441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP-VVVKLLHPP  500 (780)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHH-HHHHTTSTT
T ss_pred             CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHH-HHHHHhcCC
Confidence            999999999986444458899999999999865432    44566555555 999999864

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.89  E-value=3.7e-22  Score=199.66  Aligned_cols=281  Identities=14%  Similarity=0.139  Sum_probs=213.4

Q ss_pred             cchhHHHHHHHhcccchhh--HHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHh
Q psy12638         45 KSKREGRQDSRKLSVYHVN--KEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSL  120 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~en--k~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~l  120 (334)
                      ..|.+|+..++||.....|  .+.+.+.|+||+|+++|.+ ++++++..|+.+|.|++. +++++..+++.|+||.|+++
T Consensus        72 ~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~l  151 (510)
T 3ul1_B           72 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL  151 (510)
T ss_dssp             HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH
Confidence            3355888888886443333  5789999999999999975 567899999999999976 57999999999999999999


Q ss_pred             ccCC--chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCc----hHHHHHHHHHHHccCcchHHHHH-hc
Q psy12638        121 LEEG--KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDE----TDNVLVALCINLALNSRNAELML-KN  192 (334)
Q Consensus       121 L~~~--~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~----~~~~~~~ll~nLs~~~~n~~~i~-~~  192 (334)
                      |+++  +.++.|+.+|.|||.+ ++.|..+.+.|++++|+.++.....+.    ....+...+.|++.+......+. ..
T Consensus       152 L~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~  231 (510)
T 3ul1_B          152 LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE  231 (510)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence            9654  6799999999999987 688999999999999999997533222    12234456678877665443333 34


Q ss_pred             CchHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-
Q psy12638        193 RQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-  265 (334)
Q Consensus       193 ~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-  265 (334)
                      ++++.|+.++.+..+.+   +..++++++.++..... +  .+.++.|+.++...+ .+...      .++.++|+++. 
T Consensus       232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~------~al~aL~nl~~~  304 (510)
T 3ul1_B          232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT------PALRAIGNIVTG  304 (510)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHH------HHHHHHHHHTTS
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC-hhhhh------HHHHHHHHhhcC
Confidence            68888888877665554   35578899988766544 2  478899999886544 22222      25677899877 


Q ss_pred             CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        266 DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       266 ~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ++.....+.+.|++|.|+.+|+  ..++++.-.++.++..++.+++.....+.+.+++..|+++|++.+
T Consensus       305 ~~~~~~~i~~~g~l~~L~~LL~--~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~  371 (510)
T 3ul1_B          305 TDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  371 (510)
T ss_dssp             CHHHHHHHHHTTGGGGCC-CTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             CHHHHHHHhhccchHHHHHHhc--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence            5566778899999999999997  455689999999999999877754444445677779999998764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.88  E-value=7.2e-22  Score=195.62  Aligned_cols=275  Identities=13%  Similarity=0.095  Sum_probs=221.6

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhC-CcchHHHhhccCC-ChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANL-NLIEKLPRILMIE-DSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~-g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      ..|..|+..|.+++...+++..+... |++++|+++|.++ +.+++..|+.+|.|||.+++++..|++.|+||.|+++|+
T Consensus        32 ~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~  111 (529)
T 1jdh_A           32 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG  111 (529)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc
Confidence            45779999999999999999888875 9999999999765 889999999999999999999999999999999999996


Q ss_pred             C--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHHH
Q psy12638        123 E--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLELL  198 (334)
Q Consensus       123 ~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~L  198 (334)
                      +  +..+..|+.+|.+|+.+ +..+..+.+.|++|.|++++.+ ++.++...+...+.|++. +++++..+.+.||++.|
T Consensus       112 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L  190 (529)
T 1jdh_A          112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL  190 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence            4  45789999999999987 5788999999999999999985 455555545567789976 57889999999999999


Q ss_pred             HHHHhcCChHH----HHHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHH
Q psy12638        199 MIQAFTQKNIL----LLKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEH  272 (334)
Q Consensus       199 v~~l~~~~d~~----~~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~  272 (334)
                      +..+.++.+..    +..+++|++.++.++..+  .++++.|++++...+ .+....      ++.+++.++.+....  
T Consensus       191 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~------a~~~L~~l~~~~~~~--  261 (529)
T 1jdh_A          191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQN------CLWTLRNLSDAATKQ--  261 (529)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHHHH------HHHHHHHHHTTCTTC--
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC-hHHHHH------HHHHHHHHhcCChhh--
Confidence            99988765543    366799999987776664  478888988876542 233222      456678888754322  


Q ss_pred             hhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhc
Q psy12638        273 FCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLND  332 (334)
Q Consensus       273 l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d  332 (334)
                      ....|++|.|+++++  .+|+++...++.+++.++.+++ .++.+... +.+..|+++|++
T Consensus       262 ~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~  319 (529)
T 1jdh_A          262 EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLR  319 (529)
T ss_dssp             SCCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHc
Confidence            123478999999996  5677899999999999998765 66666654 555599999975

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.88  E-value=2.6e-21  Score=194.21  Aligned_cols=279  Identities=15%  Similarity=0.144  Sum_probs=212.5

Q ss_pred             hhHHHHHHHhc-ccchh-hHHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         47 KREGRQDSRKL-SVYHV-NKEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        47 ~~~A~~~L~~L-Si~~e-nk~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      +.+|+..++|+ |.... ..+.+.+.|+||+|+++|.+ ++++++..|+.+|.|++.+ ++.+..+++.|+||.|+.+|+
T Consensus        93 q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~  172 (529)
T 3tpo_A           93 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA  172 (529)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence            44788888775 43322 46789999999999999964 5688999999999999986 588899999999999999996


Q ss_pred             C--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCc----hHHHHHHHHHHHccCcchHHHHH-hcCc
Q psy12638        123 E--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDE----TDNVLVALCINLALNSRNAELML-KNRQ  194 (334)
Q Consensus       123 ~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~----~~~~~~~ll~nLs~~~~n~~~i~-~~~g  194 (334)
                      +  ++.++.|+.+|.|||.+ +++|..+.+.|++++|+.+|.....+.    ....+...+.|++.+......+. ..++
T Consensus       173 s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~  252 (529)
T 3tpo_A          173 SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI  252 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhH
Confidence            4  46799999999999986 689999999999999999997543222    12234456678877665543333 3468


Q ss_pred             hHHHHHHHhcCChHHH---HHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-Cc
Q psy12638        195 LELLMIQAFTQKNILL---LKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DP  267 (334)
Q Consensus       195 l~~Lv~~l~~~~d~~~---~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~  267 (334)
                      +|.|+.++.++.+.+.   ..++++++.++..... +  .++++.|+.++...+ .....      .++.++|+++. ++
T Consensus       253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~------~a~~aL~nl~~~~~  325 (529)
T 3tpo_A          253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVT------PALRAIGNIVTGTD  325 (529)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHH------HHHHHHHHHTTSCH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC-hhHHH------HHHHHHHHHHccch
Confidence            8999988776665543   5568889988765544 2  578899999886543 22222      25677899987 56


Q ss_pred             chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        268 ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       268 ~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      .....+.+.|++|.|+.+|+  ..++++..++++++..++.+++.....+.+.+++..|+++|++.+
T Consensus       326 ~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~  390 (529)
T 3tpo_A          326 EQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  390 (529)
T ss_dssp             HHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             HHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence            66778899999999999998  455689999999999999877754444445667769999998764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.88  E-value=3.3e-21  Score=197.58  Aligned_cols=283  Identities=14%  Similarity=0.091  Sum_probs=226.1

Q ss_pred             cchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      ..|..|+..|.+++.. ++++..+.+.|+++.|+++|.+++.+++..++.+|.||+. ++++|..+++.|++|.|+++|+
T Consensus       113 ~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~  192 (644)
T 2z6h_A          113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR  192 (644)
T ss_dssp             HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHH
Confidence            4577999999999976 5688888899999999999999999999999999999997 6899999999999999999996


Q ss_pred             CC---chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhcc-------------------------------------
Q psy12638        123 EG---KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLV-------------------------------------  162 (334)
Q Consensus       123 ~~---~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~-------------------------------------  162 (334)
                      ++   ..+..++.+|.+||.++++|..+.+.|+++.|++++.+                                     
T Consensus       193 ~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL  272 (644)
T 2z6h_A          193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL  272 (644)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHT
T ss_pred             cCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHH
Confidence            54   34677999999999999999999998888887776643                                     


Q ss_pred             -CCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCC--hHH---HHHHHHHHhcCCCch---hh-h--hh
Q psy12638        163 -EQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQK--NIL---LLKVIRNMSIHSNVK---HY-F--VD  229 (334)
Q Consensus       163 -~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~--d~~---~~k~l~nLa~~~~~~---~~-f--~~  229 (334)
                       .++.++...+..++.||+.+ +++++.+.+.|+++.|+..+.+..  +.+   ++.+++|++.+.+..   +. +  .+
T Consensus       273 ~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~  352 (644)
T 2z6h_A          273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY  352 (644)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc
Confidence             13344545555667788664 477889999999999999998643  343   477899999865432   22 2  47


Q ss_pred             hHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcccc-------------------
Q psy12638        230 YIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ-------------------  290 (334)
Q Consensus       230 ~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~-------------------  290 (334)
                      .++.|++++...+..+...      +++.++++++..+..+..+.+.|++|.|+++|+...                   
T Consensus       353 ~l~~L~~lL~~~~~~~v~~------~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~  426 (644)
T 2z6h_A          353 GLPVVVKLLHPPSHWPLIK------ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG  426 (644)
T ss_dssp             HHHHHHHTTSTTCCHHHHH------HHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS
T ss_pred             ChHHHHHHhCccCchHHHH------HHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc
Confidence            8999999886544223322      256777999998888889999999999999998631                   


Q ss_pred             -CCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        291 -EDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       291 -~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                       .+++++.+++.++..|+.++..+..+...+.++ .|+++|++.+
T Consensus       427 ~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~-~Lv~lL~~~~  470 (644)
T 2z6h_A          427 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP-LFVQLLYSPI  470 (644)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHH-HHHHHTTCSC
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHH-HHHHHHcCCC
Confidence             346788889999999999998887776655555 9999998864

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.87  E-value=1e-20  Score=188.75  Aligned_cols=287  Identities=14%  Similarity=0.104  Sum_probs=226.8

Q ss_pred             cchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhc-
Q psy12638         45 KSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL-  121 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL-  121 (334)
                      ..|..|+.+|.+++.. ++++..+.+.|++|+|+++|.+++..++..|+.+|.||+.+ +++|..+.+.|++|+|+.+| 
T Consensus       133 ~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~  212 (528)
T 4b8j_A          133 QLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN  212 (528)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh
Confidence            3466899999999985 78999999999999999999999999999999999999987 68899999999999999999 


Q ss_pred             c--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch-HHHHHhcCchHHH
Q psy12638        122 E--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN-AELMLKNRQLELL  198 (334)
Q Consensus       122 ~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n-~~~i~~~~gl~~L  198 (334)
                      .  ++..+..|+.+|.+|+............+++|.|+.++.+ ++..+...++..+.||+..+.. .+.+.+.|+++.|
T Consensus       213 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L  291 (528)
T 4b8j_A          213 EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  291 (528)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence            3  3457888999999999986555666678999999999975 5667777777888899876655 4677788999999


Q ss_pred             HHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHH------------------
Q psy12638        199 MIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTL------------------  254 (334)
Q Consensus       199 v~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~l------------------  254 (334)
                      +..+.++++.+   ++.++.|++.+++.... +  .+.++.|+.++......+...++.+++                  
T Consensus       292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~  371 (528)
T 4b8j_A          292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG  371 (528)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence            99988776554   46678999987654332 2  467888888876541222222221111                  


Q ss_pred             ------------------HHHHHHHHhcCC--cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh--
Q psy12638        255 ------------------EVINFIGTAASD--PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC--  312 (334)
Q Consensus       255 ------------------eav~~lg~la~~--~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~--  312 (334)
                                        +++.++++++..  ++....+++.|++++|+++|..  .|++++..++.++..++...+.  
T Consensus       372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~d~~v~~~al~~L~~l~~~~~~~~  449 (528)
T 4b8j_A          372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC--PDIRIVTVCLEGLENILKVGETDK  449 (528)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHhh
Confidence                              678889999874  6777788899999999999984  5678999999999999865543  


Q ss_pred             ---------hHHHhhcCCcHHHHHHhhhcCC
Q psy12638        313 ---------QNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       313 ---------~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                               ...++.+.+..+.+.+|+++.|
T Consensus       450 ~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~  480 (528)
T 4b8j_A          450 TLAAGDVNVFSQMIDEAEGLEKIENLQSHDN  480 (528)
T ss_dssp             HHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred             hcccccccHHHHHHHHCCcHHHHHHHHcCCC
Confidence                     2335566777778889887764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.86  E-value=2.6e-20  Score=166.42  Aligned_cols=233  Identities=16%  Similarity=0.182  Sum_probs=195.7

Q ss_pred             CCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCC-hhhhh
Q psy12638         70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIE-DRVKA  145 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~-~~~r~  145 (334)
                      .|.|+.|+++|.+++.+++..|+.+|.|++.+. +++..+++.|+||.|+++|++  +..+..|+.+|.+|+.+ ++++.
T Consensus         1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            378999999999999999999999999999865 699999999999999999964  46789999999999998 89999


Q ss_pred             HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHhcCC
Q psy12638        146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMSIHS  221 (334)
Q Consensus       146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~  221 (334)
                      .+.+.|++|.|++++.+ +++.+...++.++.||+ .+++++..+.+.|+++.|++.+.+++..+   .+.+++|++.++
T Consensus        81 ~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999985 56777777878899998 77889999999999999999987766554   466799999876


Q ss_pred             Cchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHH
Q psy12638        222 NVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVL  297 (334)
Q Consensus       222 ~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vl  297 (334)
                      +.... +  .+.++.|+.++.+.+ .+. .+     .++.+++.++. +++..+.+.+.|++|.|+++++  .++.++.-
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~-~~v-~~-----~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~  230 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTD-SEV-QK-----EAARALANIASGPTSAIKAIVDAGGVEVLQKLLT--STDSEVQK  230 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSC-HHH-HH-----HHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG--CSCHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCC-HHH-HH-----HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC--CCcHHHHH
Confidence            65433 3  478999999886433 222 22     26777899988 6677788999999999999997  45668999


Q ss_pred             HHHHHHHHHHcCchh
Q psy12638        298 QILYVFYQICRHASC  312 (334)
Q Consensus       298 qi~~~l~~l~~~~~~  312 (334)
                      +++.+++.++.++..
T Consensus       231 ~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          231 EAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHHHHHTCBC
T ss_pred             HHHHHHHHHHcCCCc
Confidence            999999999976653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.86  E-value=1.3e-20  Score=169.46  Aligned_cols=220  Identities=15%  Similarity=0.164  Sum_probs=181.9

Q ss_pred             CcchhHHHHHHHh-cccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhc
Q psy12638         44 PKSKREGRQDSRK-LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        44 ~~~~~~A~~~L~~-LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      +..+..|...|.+ ++...+++..+.+.|+++.|+++|.+++++++..|+.+|.||+. +++++..+++.|++|.|+.+|
T Consensus        26 ~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL  105 (252)
T 4db8_A           26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL  105 (252)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence            4556788999955 55577899999999999999999999999999999999999998 589999999999999999999


Q ss_pred             cC--CchHHHHHHHHHHccCChhhh-hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHH
Q psy12638        122 EE--GKHQKIILQLLYHLSIEDRVK-AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLEL  197 (334)
Q Consensus       122 ~~--~~~~~~al~~L~~LS~~~~~r-~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~  197 (334)
                      ++  +..+..|+.+|.+|+.+++.+ ..+.+.|++|.|+++|.+ ++..+...++..+.||+. ++.+.+.+.+.|+++.
T Consensus       106 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  184 (252)
T 4db8_A          106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPA  184 (252)
T ss_dssp             GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHH
Confidence            64  467899999999999999888 899999999999999975 566777788888999987 4567778888889998


Q ss_pred             HHHHHhcCChHHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhC
Q psy12638        198 LMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKN  276 (334)
Q Consensus       198 Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~  276 (334)
                      |++.+.+++..                                     . .+     .++.++++++. +++....+.+.
T Consensus       185 L~~ll~~~~~~-------------------------------------v-~~-----~a~~~L~~l~~~~~~~~~~~~~~  221 (252)
T 4db8_A          185 LVQLLSSPNEQ-------------------------------------I-LQ-----EALWALSNIASGGNEQKQAVKEA  221 (252)
T ss_dssp             HHHGGGCSSHH-------------------------------------H-HH-----HHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHCCCCHH-------------------------------------H-HH-----HHHHHHHHHhcCCHHHHHHHHHC
Confidence            88775432111                                     1 11     25667788875 56677788999


Q ss_pred             CchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638        277 STVDLLINLLKEMQEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       277 g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~  309 (334)
                      |++|.|+++++.  .++++.-+++.++..++.|
T Consensus       222 g~i~~L~~ll~~--~~~~v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          222 GALEKLEQLQSH--ENEKIQKEAQEALEKLQSH  252 (252)
T ss_dssp             THHHHHHTTTTC--SSSHHHHTHHHHHHTTC--
T ss_pred             CcHHHHHHHhCC--CCHHHHHHHHHHHHHHhcC
Confidence            999999999984  4668888889999888654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.85  E-value=1.2e-19  Score=181.31  Aligned_cols=285  Identities=11%  Similarity=0.110  Sum_probs=219.8

Q ss_pred             cchhHHHHHHHhcccc--hhhHHHhHhCCcchHHHhhccCC-ChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHh
Q psy12638         45 KSKREGRQDSRKLSVY--HVNKEQMANLNLIEKLPRILMIE-DSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSL  120 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~--~enk~~m~~~g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~l  120 (334)
                      ..|..|+..|.++...  ..++..+.+.|++|.|+++|.++ ++.++..|+.+|.|++.+ ++.+..+++.|+||.|+.+
T Consensus       102 ~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l  181 (530)
T 1wa5_B          102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQL  181 (530)
T ss_dssp             HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHH
Confidence            3466899999887442  45778899999999999999997 899999999999999986 6899999999999999999


Q ss_pred             cc--CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-chHHHHHhcCchH
Q psy12638        121 LE--EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-RNAELMLKNRQLE  196 (334)
Q Consensus       121 L~--~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~gl~  196 (334)
                      |+  ++..++.|+.+|.+|+.+ ++.|..+...|++|+|++++.+ ++..+...++..+.||+.+. .........++++
T Consensus       182 L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~  260 (530)
T 1wa5_B          182 LYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP  260 (530)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH
Confidence            95  556899999999999987 6889999999999999999986 56677777778888998765 4444555568999


Q ss_pred             HHHHHHhcCChHH---HHHHHHHHhcCCCch-hhh--hhhHHHHHHHhhcCCccchhHH---hhc---------------
Q psy12638        197 LLMIQAFTQKNIL---LLKVIRNMSIHSNVK-HYF--VDYIGDIANCVQKEKDENIKLE---CLG---------------  252 (334)
Q Consensus       197 ~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~-~~f--~~~i~~L~~~l~~~~~~~~~ve---~Lg---------------  252 (334)
                      .|+.++.++++.+   ++.++.+++.+.+.. +.+  .+.++.|+.++...+ .+....   +|+               
T Consensus       261 ~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~  339 (530)
T 1wa5_B          261 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQTPALRAVGNIVTGNDLQTQVVIN  339 (530)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC-hhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999876655443   366788999775443 222  367777777765432 111111   111               


Q ss_pred             --HH----------------HHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC--c-
Q psy12638        253 --TL----------------EVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH--A-  310 (334)
Q Consensus       253 --~l----------------eav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~--~-  310 (334)
                        .+                +|+.+++.++. +++..+.+.+.|++|.|+++|+.  .+.++...++.+++.++.+  + 
T Consensus       340 ~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~  417 (530)
T 1wa5_B          340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQR  417 (530)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCCc
Confidence              11                68889999987 56666777889999999999974  5678999999999999864  2 


Q ss_pred             -hhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        311 -SCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       311 -~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                       +..+.+... +++..|+++|++.+
T Consensus       418 ~~~~~~l~~~-~~l~~L~~ll~~~~  441 (530)
T 1wa5_B          418 PDIIRYLVSQ-GCIKPLCDLLEIAD  441 (530)
T ss_dssp             THHHHHHHHT-TCHHHHHHHTTTCC
T ss_pred             HHHHHHHHHC-CCHHHHHHHHhCCC
Confidence             455566654 55559999998764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=6.3e-21  Score=172.59  Aligned_cols=174  Identities=16%  Similarity=0.218  Sum_probs=146.2

Q ss_pred             chhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc-
Q psy12638         46 SKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE-  122 (334)
Q Consensus        46 ~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~-  122 (334)
                      -|..|+.++.+|+. .++||..+.+.|+||+|+++|.++++++++.|+.+|.|||.+ +++|..|++.|+||+|+++|+ 
T Consensus        26 ~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~  105 (233)
T 3tt9_A           26 RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ  105 (233)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHcc
Confidence            35578899999995 678999999999999999999999999999999999999985 799999999999999999995 


Q ss_pred             --CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhc---cCC------------CCchHHHHHHHHHHHcc-Ccc
Q psy12638        123 --EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL---VEQ------------DDETDNVLVALCINLAL-NSR  184 (334)
Q Consensus       123 --~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~---~~~------------~~~~~~~~~~ll~nLs~-~~~  184 (334)
                        +++.++.|+++|++||..+++|..|.+ ++||+|++++.   ++.            +.++...+...+.|||. +++
T Consensus       106 ~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~  184 (233)
T 3tt9_A          106 TRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD  184 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHH
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHH
Confidence              346789999999999999999999987 58999999774   121            33555667788899976 669


Q ss_pred             hHHHHHhcC-chHHHHHHHhcC------ChH---HHHHHHHHHhcC
Q psy12638        185 NAELMLKNR-QLELLMIQAFTQ------KNI---LLLKVIRNMSIH  220 (334)
Q Consensus       185 n~~~i~~~~-gl~~Lv~~l~~~------~d~---~~~k~l~nLa~~  220 (334)
                      +++.|.+.+ ++++|+..+..+      ++.   -.+.++||||..
T Consensus       185 ~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            999999765 469999997753      122   257789999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.85  E-value=3.3e-19  Score=172.74  Aligned_cols=278  Identities=13%  Similarity=0.124  Sum_probs=219.9

Q ss_pred             cchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      ..|..|+.+|.+++.. ++++..+.+.|++|.|++++.++++++++.|+.+|.|++.+ ++.|..+++.|++|.|+++++
T Consensus        80 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~  159 (450)
T 2jdq_A           80 TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS  159 (450)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence            4467899999999874 67888889999999999999999999999999999999998 589999999999999999996


Q ss_pred             C---CchHHHHHHHHHHccCCh--hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchH
Q psy12638        123 E---GKHQKIILQLLYHLSIED--RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLE  196 (334)
Q Consensus       123 ~---~~~~~~al~~L~~LS~~~--~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~  196 (334)
                      +   +..+..|+.+|.+|+.+.  ..+..+. .+++|.|++++.+ +++.+...+...+.|++.+ +++...+.+.|+++
T Consensus       160 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  237 (450)
T 2jdq_A          160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR  237 (450)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence            3   357889999999999764  3333333 7899999999975 5667767777788899875 46777888889999


Q ss_pred             HHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-Ccch
Q psy12638        197 LLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPIS  269 (334)
Q Consensus       197 ~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~  269 (334)
                      .|+..+.+.+..+   ++.++.+++.+.+.... +  .+.++.|+.++...+  ..+..     +++.++++++. +++.
T Consensus       238 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~vr~-----~a~~~L~~l~~~~~~~  310 (450)
T 2jdq_A          238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK--ESIKK-----EACWTISNITAGNRAQ  310 (450)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS--HHHHH-----HHHHHHHHHTTSCHHH
T ss_pred             HHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC--HHHHH-----HHHHHHHHHHcCCHHH
Confidence            9999887555443   46678999987665433 2  378888988886532  22222     36788899997 5666


Q ss_pred             HHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC--chhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        270 AEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH--ASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       270 ~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~--~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      .+.+.+.|++|.|+++|+.  .+.++...++.+++.++.+  ++..+.++.. +++..|+++|++++
T Consensus       311 ~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~  374 (450)
T 2jdq_A          311 IQTVIDANIFPALISILQT--AEFRTRKEAAWAITNATSGGSAEQIKYLVEL-GCIKPLCDLLTVMD  374 (450)
T ss_dssp             HHHHHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-TCHHHHHHGGGSSC
T ss_pred             HHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC-CCHHHHHHHhcCCC
Confidence            6778888999999999984  4668999999999999974  3456666654 55559999998763

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.83  E-value=1.4e-19  Score=189.95  Aligned_cols=284  Identities=14%  Similarity=0.088  Sum_probs=222.1

Q ss_pred             CcchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhc
Q psy12638         44 PKSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        44 ~~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      +..|..|+.+|.+++.. ++++..+.+.|+++.|++++.+++..++..++.+|.+|+. ++++|..+++.|++|.|+.++
T Consensus       248 ~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL  327 (780)
T 2z6g_A          248 DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM  327 (780)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH
Confidence            35577999999999986 5678888899999999999999999999999999999997 479999999999999999999


Q ss_pred             cCCc---hHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccC-----------------------------------
Q psy12638        122 EEGK---HQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVE-----------------------------------  163 (334)
Q Consensus       122 ~~~~---~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~-----------------------------------  163 (334)
                      +++.   .+..++.+|.+||..+++|..+.+.|+++.|+.++.+.                                   
T Consensus       328 ~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~l  407 (780)
T 2z6g_A          328 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL  407 (780)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHH
Confidence            6442   46678999999999988999998888777776665431                                   


Q ss_pred             ---CCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCCh--HH---HHHHHHHHhcCCCchh----hh--h
Q psy12638        164 ---QDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKN--IL---LLKVIRNMSIHSNVKH----YF--V  228 (334)
Q Consensus       164 ---~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d--~~---~~k~l~nLa~~~~~~~----~f--~  228 (334)
                         ++..+...++.++.||+.. +++++.+.+.||++.|++.+.+..+  .+   ++.+++|++...+..+    .+  .
T Consensus       408 L~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~  487 (780)
T 2z6g_A          408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH  487 (780)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHT
T ss_pred             HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHc
Confidence               3344444555667788665 4678889999999999999986432  33   4778999988654421    22  4


Q ss_pred             hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhcccc------------------
Q psy12638        229 DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQ------------------  290 (334)
Q Consensus       229 ~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~------------------  290 (334)
                      ++++.|++++...+..+...      +++.+|++++..+..+..+.+.|++|.|+++|+.+.                  
T Consensus       488 ~~l~~L~~lL~~~~~~~v~~------~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~  561 (780)
T 2z6g_A          488 YGLPVVVKLLHPPSHWPLIK------ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE  561 (780)
T ss_dssp             TCHHHHHHTTSTTCCHHHHH------HHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCST
T ss_pred             CCHHHHHHHhcCCChHHHHH------HHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhc
Confidence            77889999886554222222      266778999998888888999999999999997532                  


Q ss_pred             --CCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        291 --EDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       291 --~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                        .+++++..++.+++.++.++..+..+...+.++ .|+++|++.+
T Consensus       562 ~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~-~Lv~lL~~~~  606 (780)
T 2z6g_A          562 GVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP-LFVQLLYSPI  606 (780)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHH-HHHHGGGCSC
T ss_pred             ccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHH-HHHHHHcCCC
Confidence              235677788999999999888887776655555 9999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=5.3e-20  Score=166.54  Aligned_cols=207  Identities=19%  Similarity=0.221  Sum_probs=160.1

Q ss_pred             cchHHHhhccCCCh--hHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccC-Chhhhh
Q psy12638         72 LIEKLPRILMIEDS--NLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSI-EDRVKA  145 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~--~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~-~~~~r~  145 (334)
                      .+|+++++|.++++  +++..|+..|.||++ ++++|..+++.|+||+||++|+  +++.|+.|+..|.|||. ++++|.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999998  899999999999996 6799999999999999999996  45679999999999998 589999


Q ss_pred             HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCC---
Q psy12638        146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN---  222 (334)
Q Consensus       146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~---  222 (334)
                      .|++.|+||+|+++|.+.++.++++.+..+++|||.+++++..|.++ |+++|++++..           ..+.+..   
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~-----------p~sG~~~~~~  156 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIII-----------PFSGWPEGDY  156 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCH-----------HHHCCCGGGC
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhc-----------cccCCccccc
Confidence            99999999999999985456777777878999999999999999985 89999876431           0011100   


Q ss_pred             chhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhC-CchHHHHHHhccc----cCCchHH
Q psy12638        223 VKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKN-STVDLLINLLKEM----QEDDEIV  296 (334)
Q Consensus       223 ~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~-g~I~~Lv~LL~~~----~~dde~v  296 (334)
                      .+..             .....+.+.      .|+.+|.+++. +++.++.+.+. |+|+.|+.+++..    .-|+..+
T Consensus       157 ~~~~-------------~~~~~~v~~------na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~  217 (233)
T 3tt9_A          157 PKAN-------------GLLDFDIFY------NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKAT  217 (233)
T ss_dssp             CCCC-------------TTCCHHHHH------HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHH
T ss_pred             cccc-------------ccchHHHHH------HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHH
Confidence            0000             000111211      25667799988 56889989875 7899999999974    2255556


Q ss_pred             HHHHHHHHHHHcC
Q psy12638        297 LQILYVFYQICRH  309 (334)
Q Consensus       297 lqi~~~l~~l~~~  309 (334)
                      --++-++..|+.+
T Consensus       218 En~v~~L~nLs~~  230 (233)
T 3tt9_A          218 ENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhh
Confidence            5567777777643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.82  E-value=1.9e-18  Score=172.57  Aligned_cols=285  Identities=14%  Similarity=0.131  Sum_probs=220.4

Q ss_pred             chhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638         46 SKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE  123 (334)
Q Consensus        46 ~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~  123 (334)
                      -|..|+.+|.+++.. ++++..+.+.|+++.|+++|.+++.+++..|+.+|.||+.+ ++.+..+++.|++|+|+.++.+
T Consensus       147 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  226 (530)
T 1wa5_B          147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS  226 (530)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc
Confidence            467899999999974 67889999999999999999999999999999999999998 6899999999999999999964


Q ss_pred             --CchHHHHHHHHHHccCCh-hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHH
Q psy12638        124 --GKHQKIILQLLYHLSIED-RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLM  199 (334)
Q Consensus       124 --~~~~~~al~~L~~LS~~~-~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv  199 (334)
                        +..+..|+.+|.+|+... .........+++|.|+.++.+ +++.+...++..+.||+.. +...+.+.+.|+++.|+
T Consensus       227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv  305 (530)
T 1wa5_B          227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV  305 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence              457888999999999875 555666678999999999975 5667777777888899865 45677888889999999


Q ss_pred             HHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhc---------------------
Q psy12638        200 IQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLG---------------------  252 (334)
Q Consensus       200 ~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg---------------------  252 (334)
                      ..+.+.+..+   ++.++.|++.+++.... +  .++++.|+.++...+ .+...++++                     
T Consensus       306 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~  384 (530)
T 1wa5_B          306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWTISNITAGNTEQIQAVIDANL  384 (530)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred             HHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            9987655443   46778999987654322 2  367777777765432 111111111                     


Q ss_pred             ------HH---------HHHHHHHHhcC--Cc--chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhh
Q psy12638        253 ------TL---------EVINFIGTAAS--DP--ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQ  313 (334)
Q Consensus       253 ------~l---------eav~~lg~la~--~~--~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~  313 (334)
                            .+         +++.+++.++.  .+  +..+.+.+.|++|.|+++|..  .|.++...++.++..++...+..
T Consensus       385 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~al~aL~~l~~~~~~~  462 (530)
T 1wa5_B          385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI--ADNRIIEVTLDALENILKMGEAD  462 (530)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhh
Confidence                  11         67888999976  34  666778899999999999984  46788888999999998654421


Q ss_pred             -----------HHHhhcCCcHHHHHHhhhcCC
Q psy12638        314 -----------NYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       314 -----------~~i~~~~~i~~~Li~LL~d~n  334 (334)
                                 ...+.+.+..+.|.+|+++.|
T Consensus       463 ~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~  494 (530)
T 1wa5_B          463 KEARGLNINENADFIEKAGGMEKIFNCQQNEN  494 (530)
T ss_dssp             HHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC
T ss_pred             hhcccccccHHHHHHHHcCcHHHHHHHHcCCC
Confidence                       123555677779999988765

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.82  E-value=6.3e-19  Score=158.46  Aligned_cols=217  Identities=16%  Similarity=0.189  Sum_probs=177.9

Q ss_pred             CcchHHHhhccCCChhHHHHHHHHHHhhc-CChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccC-ChhhhhH
Q psy12638         71 NLIEKLPRILMIEDSNLQSSTLKLLFNLS-FDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSI-EDRVKAM  146 (334)
Q Consensus        71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS-~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~-~~~~r~~  146 (334)
                      ...+.++++|.+++.+++..|+..|.++. .+++.+..+++.|+||.|+++|++  +..+..|+.+|.+++. +++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            45788999999999999999999997754 467999999999999999999964  4678899999999998 6899999


Q ss_pred             hhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchH-HHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchh
Q psy12638        147 FAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA-ELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKH  225 (334)
Q Consensus       147 i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~-~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~  225 (334)
                      +.+.|++|.|+++|.+ +++.+...++..+.|++.++.++ ..+.+.|+++.|++.+.+++..                 
T Consensus        92 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-----------------  153 (252)
T 4db8_A           92 VIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-----------------  153 (252)
T ss_dssp             HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH-----------------
T ss_pred             HHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH-----------------
Confidence            9999999999999986 56777777888899999999988 8888999999888775432111                 


Q ss_pred             hhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHH
Q psy12638        226 YFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFY  304 (334)
Q Consensus       226 ~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~  304 (334)
                                          . .+     .++.++++++. +++....+.+.|++|.|+++|+.  .++++...++.+++
T Consensus       154 --------------------v-~~-----~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~  205 (252)
T 4db8_A          154 --------------------I-LQ-----EALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALS  205 (252)
T ss_dssp             --------------------H-HH-----HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHH
T ss_pred             --------------------H-HH-----HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHH
Confidence                                1 11     25677788887 45666788889999999999984  46789999999999


Q ss_pred             HHHcCch-hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        305 QICRHAS-CQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       305 ~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      .++.+++ .++.+. +.+++..|+++|++.+
T Consensus       206 ~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~  235 (252)
T 4db8_A          206 NIASGGNEQKQAVK-EAGALEKLEQLQSHEN  235 (252)
T ss_dssp             HHTTSCHHHHHHHH-HTTHHHHHHTTTTCSS
T ss_pred             HHhcCCHHHHHHHH-HCCcHHHHHHHhCCCC
Confidence            9997665 554555 4567779999998864

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.81  E-value=1.9e-18  Score=167.33  Aligned_cols=279  Identities=14%  Similarity=0.146  Sum_probs=214.4

Q ss_pred             cchhHHHHHHHhccc--chhhHHHhHhC-CcchHHHhhccCC-ChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHH
Q psy12638         45 KSKREGRQDSRKLSV--YHVNKEQMANL-NLIEKLPRILMIE-DSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVS  119 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi--~~enk~~m~~~-g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~  119 (334)
                      ..|..|+..|.++..  .......+.+. |++|.|++++.++ +..++..|+.+|.|++.+ ++.+..+++.|++|.|++
T Consensus        35 ~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  114 (450)
T 2jdq_A           35 EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE  114 (450)
T ss_dssp             HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHH
Confidence            346789999988632  22334556777 9999999999998 899999999999999985 688888999999999999


Q ss_pred             hccC--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc--chHHHHHhcCc
Q psy12638        120 LLEE--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS--RNAELMLKNRQ  194 (334)
Q Consensus       120 lL~~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~--~n~~~i~~~~g  194 (334)
                      +|++  +..++.|+.+|.+++.+ ++.|..+.+.|++|.|++++.+.++..+...++..+.|++.+.  .....+. .++
T Consensus       115 lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~  193 (450)
T 2jdq_A          115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPC  193 (450)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGG
T ss_pred             HHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHH
Confidence            9964  46799999999999987 4789999999999999999985456777777778888998653  3333333 579


Q ss_pred             hHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-c
Q psy12638        195 LELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-P  267 (334)
Q Consensus       195 l~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~  267 (334)
                      ++.|+..+.++++.+   +..++++++.+.+.... +  .+.++.|++++...+ .+. .+     .++.+++.++.. +
T Consensus       194 l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v-~~-----~a~~~L~~l~~~~~  266 (450)
T 2jdq_A          194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND-YKV-VS-----PALRAVGNIVTGDD  266 (450)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC-HHH-HH-----HHHHHHHHHTTSCH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc-hhH-HH-----HHHHHHHHHhhCCh
Confidence            999999877655443   35678999987644333 2  478899999886433 122 11     266788999885 4


Q ss_pred             chHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        268 ISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       268 ~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      +..+.+.+.|++|.|+++|+.  .+.++...++.+++.++.+.+ ..+.++.. +++..|+++|++.+
T Consensus       267 ~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~~l~~~~  331 (450)
T 2jdq_A          267 IQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDA-NIFPALISILQTAE  331 (450)
T ss_dssp             HHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHHSC
T ss_pred             HHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHhcCC
Confidence            455567888999999999985  467888899999999997544 55555654 56669999998753

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.80  E-value=1.9e-18  Score=154.20  Aligned_cols=214  Identities=14%  Similarity=0.182  Sum_probs=176.5

Q ss_pred             cchhHHHHHHHhcccch-hhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSVYH-VNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~-enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      ..|..|+..|.+++... +++..+.+.|+++.|++++.+++.+++..|+.+|.||+.+ ++++..+++.|++|.|+.+|+
T Consensus        17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~   96 (252)
T 4hxt_A           17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT   96 (252)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc
Confidence            45678999999998654 5999999999999999999999999999999999999998 899999999999999999996


Q ss_pred             C--CchHHHHHHHHHHcc-CChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHHH
Q psy12638        123 E--GKHQKIILQLLYHLS-IEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLELL  198 (334)
Q Consensus       123 ~--~~~~~~al~~L~~LS-~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~L  198 (334)
                      +  +..+..|+.+|.+|+ .+++++..+.+.|++|.|++++.+ +++.+...++..+.|++. ++.+.+.+.+.|+++.|
T Consensus        97 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  175 (252)
T 4hxt_A           97 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL  175 (252)
T ss_dssp             CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHH
Confidence            4  467899999999999 678999999999999999999985 567777788888999987 45566888899999999


Q ss_pred             HHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC
Q psy12638        199 MIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD  266 (334)
Q Consensus       199 v~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~  266 (334)
                      ++.+.+.++.+   ++.++.|++.+++.... +  .++++.|++++...+ .+.. +     .|+.++++++..
T Consensus       176 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~-~-----~a~~~L~~l~~~  242 (252)
T 4hxt_A          176 VKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQ-K-----EAQRALENIKSG  242 (252)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHH-H-----HHHHHHHHHHHT
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHH-H-----HHHHHHHHHHcC
Confidence            99987665544   46679999986554333 3  478888888876443 2222 2     256677887764

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.79  E-value=5.3e-18  Score=148.44  Aligned_cols=195  Identities=16%  Similarity=0.171  Sum_probs=159.4

Q ss_pred             hCCcchHHHhhccCCChhHHHHHHHHHHhhc-CChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccC-Chhhh
Q psy12638         69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLS-FDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSI-EDRVK  144 (334)
Q Consensus        69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS-~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~-~~~~r  144 (334)
                      ..|..++|+++|.+++.+++..|+.+|.||+ .+++.+..+++.|+||.|+++|++  +..+..|+.+|.+|+. +++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            4578899999999999999999999999999 467999999999999999999964  4678999999999995 67899


Q ss_pred             hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCc
Q psy12638        145 AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNV  223 (334)
Q Consensus       145 ~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~  223 (334)
                      ..+.+.|++|.|+++|.+ ++..+...++.++.|++. ++...+.+.+.|+++.|++.+.+++.                
T Consensus        90 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----------------  152 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE----------------  152 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH----------------
T ss_pred             HHHHHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCH----------------
Confidence            999999999999999975 567777778788999985 45667788888899988877543211                


Q ss_pred             hhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHH
Q psy12638        224 KHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYV  302 (334)
Q Consensus       224 ~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~  302 (334)
                                           +. .+     .++.++++++.. ++.+..+.+.|+++.|+++++  .++.++.-+++.+
T Consensus       153 ---------------------~v-~~-----~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~a  203 (210)
T 4db6_A          153 ---------------------QI-LQ-----EALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEA  203 (210)
T ss_dssp             ---------------------HH-HH-----HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHH
T ss_pred             ---------------------HH-HH-----HHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHH
Confidence                                 11 11     256677888875 777788999999999999998  4567899999999


Q ss_pred             HHHHHcC
Q psy12638        303 FYQICRH  309 (334)
Q Consensus       303 l~~l~~~  309 (334)
                      +..++.|
T Consensus       204 L~~l~~~  210 (210)
T 4db6_A          204 LEKLQSH  210 (210)
T ss_dssp             HHHHCC-
T ss_pred             HHHHhcC
Confidence            9998754

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.78  E-value=5.7e-18  Score=174.86  Aligned_cols=264  Identities=15%  Similarity=0.197  Sum_probs=199.2

Q ss_pred             hHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--c---hHHHHHHHHHHc
Q psy12638         63 NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--K---HQKIILQLLYHL  137 (334)
Q Consensus        63 nk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~---~~~~al~~L~~L  137 (334)
                      |+..+.+.|+||+|+.++.++++..++.|+++|+|||.|+++|..+++.|++|+|+++|.+.  .   .+..|+.+|.+|
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999533  2   688999999999


Q ss_pred             cCChhhhhHhhc---cCcHHHHHHHhccCCCCc------------h-HHHHHHHHHHHccCcc-----hHHHHHhc-Cch
Q psy12638        138 SIEDRVKAMFAY---TNCMSLLMNMLLVEQDDE------------T-DNVLVALCINLALNSR-----NAELMLKN-RQL  195 (334)
Q Consensus       138 S~~~~~r~~i~~---t~~i~~Lv~LL~~~~~~~------------~-~~~~~~ll~nLs~~~~-----n~~~i~~~-~gl  195 (334)
                      +........|..   .|+||+|++||..+++..            + ..+++..+.||+..+.     .+..|.+. |++
T Consensus       529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~  608 (778)
T 3opb_A          529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW  608 (778)
T ss_dssp             HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred             HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence            876656666742   489999999997322221            2 3477788899988863     36778875 899


Q ss_pred             HHHHHHHhcCChHH---HHHHHHHHhcCCCch-hhhh--------hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHh
Q psy12638        196 ELLMIQAFTQKNIL---LLKVIRNMSIHSNVK-HYFV--------DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTA  263 (334)
Q Consensus       196 ~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~-~~f~--------~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~l  263 (334)
                      +.|+.++.+.++.+   +..++.|++.++... +.|.        +.+..|+.++...+ .+. ..     +|+.+++.+
T Consensus       609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~-r~-----AAagALAnL  681 (778)
T 3opb_A          609 STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VES-QR-----AVAAIFANI  681 (778)
T ss_dssp             HHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHH-HH-----HHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHH-HH-----HHHHHHHHh
Confidence            99999998876654   467899999977653 3431        13667777764422 222 22     256778888


Q ss_pred             c-CCcchHHHhhhC-CchHHHHHHhccccCCchHHHHHHHHHHHHHc----Cch--hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        264 A-SDPISAEHFCKN-STVDLLINLLKEMQEDDEIVLQILYVFYQICR----HAS--CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       264 a-~~~~~~~~l~~~-g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~----~~~--~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      + .++..++.+++. ++|+.++++|+...+|++++.-.+.+++.|+.    +.+  ....+.........|.+.|++.
T Consensus       682 ts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~  759 (778)
T 3opb_A          682 ATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG  759 (778)
T ss_dssp             HHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred             cCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence            5 477766666665 79999999999755889999999999999995    222  3333443334445666666653

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.78  E-value=6.7e-18  Score=147.78  Aligned_cols=175  Identities=13%  Similarity=0.151  Sum_probs=150.4

Q ss_pred             cchhHHHHHHHhcc-cchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLS-VYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LS-i~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      ..|..|...|.+++ ..++++..+.+.|+++.|+++|.+++++++..|+.+|.||+. +++++..+++.|+||.|+.+|+
T Consensus        27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~  106 (210)
T 4db6_A           27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS  106 (210)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHc
Confidence            45668999999999 567899999999999999999999999999999999999996 5799999999999999999996


Q ss_pred             C--CchHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHH
Q psy12638        123 E--GKHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELL  198 (334)
Q Consensus       123 ~--~~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~L  198 (334)
                      +  +..+..|+.+|.+|+. +++.+..+.+.|++|.|++++.+ ++..+...++..+.|++.+ ++++..+.+.|+++.|
T Consensus       107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L  185 (210)
T 4db6_A          107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL  185 (210)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHH
Confidence            4  4578899999999996 46677888899999999999985 5677777787889999877 7888899999999999


Q ss_pred             HHHHhcCChHH---HHHHHHHHhcC
Q psy12638        199 MIQAFTQKNIL---LLKVIRNMSIH  220 (334)
Q Consensus       199 v~~l~~~~d~~---~~k~l~nLa~~  220 (334)
                      ++++.+++..+   +..++++++.+
T Consensus       186 ~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          186 EQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            99887655544   35567777753

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.1e-17  Score=172.83  Aligned_cols=277  Identities=14%  Similarity=0.152  Sum_probs=216.4

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhC-CcchHHHhhccC-CChhHHHHHHHHHHhhcCChh---------------------
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANL-NLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTN---------------------  103 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~-g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~~---------------------  103 (334)
                      ++.|+.-|..||..++.|+.+.+. |.++.|++++++ ++..+..-++.+|.||+.+.+                     
T Consensus       351 ~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p  430 (778)
T 3opb_A          351 VEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXP  430 (778)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--------------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCc
Confidence            678999999999999999999886 569999999995 788999999999999998422                     


Q ss_pred             ------------------HHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccC
Q psy12638        104 ------------------LREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVE  163 (334)
Q Consensus       104 ------------------~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~  163 (334)
                                        +|..+.+.|+||.|+.+++  ++..++.|+.+|++||.++++|..+.+.|++++|+.++.++
T Consensus       431 ~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~  510 (778)
T 3opb_A          431 AADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK  510 (778)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC
T ss_pred             ccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC
Confidence                              5778889999999999995  55789999999999999999999999999999999999876


Q ss_pred             CCCc--hHHHHHHHHHHHccCcchHHHHHh---cCchHHHHHHHhc--CCh--------------H-HHHHHHHHHhcCC
Q psy12638        164 QDDE--TDNVLVALCINLALNSRNAELMLK---NRQLELLMIQAFT--QKN--------------I-LLLKVIRNMSIHS  221 (334)
Q Consensus       164 ~~~~--~~~~~~~ll~nLs~~~~n~~~i~~---~~gl~~Lv~~l~~--~~d--------------~-~~~k~l~nLa~~~  221 (334)
                      +...  .+..++..+.|++........+..   .|+++||+.++..  +.+              . .++.++.|||..+
T Consensus       511 ~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~  590 (778)
T 3opb_A          511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE  590 (778)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCC
T ss_pred             CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCC
Confidence            5432  556677888898765555444421   2899999999872  221              1 3577899999997


Q ss_pred             Cc-----hhh-hh--hhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchH-HHhhhCC------chHHHHHHh
Q psy12638        222 NV-----KHY-FV--DYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISA-EHFCKNS------TVDLLINLL  286 (334)
Q Consensus       222 ~~-----~~~-f~--~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~-~~l~~~g------~I~~Lv~LL  286 (334)
                      .+     ++. +.  ++++.|..++.+..  +.+..     +|+.++++++.+++.. +.+...+      -++.|+.++
T Consensus       591 ~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n--~~Vrr-----AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll  663 (778)
T 3opb_A          591 TSDGEEVCKHIVSTKVYWSTIENLMLDEN--VPLQR-----STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL  663 (778)
T ss_dssp             SHHHHHHHHHHHHSHHHHHHHHHGGGCSS--HHHHH-----HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG
T ss_pred             cccchHHHHHHHHhcCHHHHHHHHHhCCC--HHHHH-----HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH
Confidence            43     343 32  57888888775432  23222     3788899999988863 3443222      278999999


Q ss_pred             ccccCCchHHHHHHHHHHHHH-cCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638        287 KEMQEDDEIVLQILYVFYQIC-RHASCQNYLIKETDAPAYMIDLLND  332 (334)
Q Consensus       287 ~~~~~dde~vlqi~~~l~~l~-~~~~~~~~i~~~~~i~~~Li~LL~d  332 (334)
                      +  .+|+++.-.+..++..++ .++..++.++...+.+..+++++++
T Consensus       664 ~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~  708 (778)
T 3opb_A          664 Q--LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD  708 (778)
T ss_dssp             G--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             c--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence            6  588899999999999996 5777778888876666699999988

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.65  E-value=1.2e-15  Score=142.83  Aligned_cols=175  Identities=17%  Similarity=0.157  Sum_probs=150.7

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHh-hccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPR-ILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~-LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      +.|..|+..|..+....+|...+.+.|++|+|++ +|.+++++++..|+.+|.|++.+ ++.|..+++.|++|+|+.+|+
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            4677899999999988889999999999999999 99999999999999999999986 689999999999999999996


Q ss_pred             -C--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHH
Q psy12638        123 -E--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLEL  197 (334)
Q Consensus       123 -~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~  197 (334)
                       +  +..+..|+.+|.+|+.+ +.....|...|++|.|+.+|.+ ++..++.+++.++.|++. +++.++.+++.|++++
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence             3  35688899999999864 5667789999999999999986 577888888888888854 5778999999999999


Q ss_pred             HHHHHhcCChHH---HHHHHHHHhcC
Q psy12638        198 LMIQAFTQKNIL---LLKVIRNMSIH  220 (334)
Q Consensus       198 Lv~~l~~~~d~~---~~k~l~nLa~~  220 (334)
                      |+.++.+.+..+   ++.++.|++..
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            999987654433   46667777766

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.64  E-value=1.1e-14  Score=136.20  Aligned_cols=181  Identities=15%  Similarity=0.133  Sum_probs=147.8

Q ss_pred             hHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH-hccC--CchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhc
Q psy12638         86 NLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS-LLEE--GKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLL  161 (334)
Q Consensus        86 ~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~-lL~~--~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~  161 (334)
                      +-+..|+..|.+|+.+.++...+++.|++|+|+. +|++  +..+..|+.+|.+++.+ ++.|..+.+.|++|+|+.+|.
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            5788999999999999999999999999999999 9964  46799999999999875 689999999999999999998


Q ss_pred             cCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhc
Q psy12638        162 VEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQK  240 (334)
Q Consensus       162 ~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~  240 (334)
                      ++++..+...++..+.|++.+ +...+.+.+.||+++|+..+.+++..+..                             
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~-----------------------------  185 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV-----------------------------  185 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH-----------------------------
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHH-----------------------------
Confidence            655667777777788899764 45577888889999998876543221111                             


Q ss_pred             CCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638        241 EKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS  311 (334)
Q Consensus       241 ~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~  311 (334)
                                    +|+.+++.++. +++.+..+++.|++|+|+++|++  .|.++.-+++.+++.++...+
T Consensus       186 --------------~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~--~d~~v~~~al~aL~~l~~~~~  241 (296)
T 1xqr_A          186 --------------KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVTDFP  241 (296)
T ss_dssp             --------------HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHTTCH
T ss_pred             --------------HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC--CChhHHHHHHHHHHHHHhCCh
Confidence                          25566666655 56778899999999999999984  467899999999999998744

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.44  E-value=1.7e-12  Score=131.19  Aligned_cols=269  Identities=19%  Similarity=0.211  Sum_probs=198.8

Q ss_pred             ccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCC--ChhHHHHHHHHHHhhcC-Chh---------------
Q psy12638         42 IVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIE--DSNLQSSTLKLLFNLSF-DTN---------------  103 (334)
Q Consensus        42 ~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~-d~~---------------  103 (334)
                      -..+.||.|+.-|+.+|..  ++... ..++++.|+..|+.+  |.++.+.++..|+|+-. +++               
T Consensus        34 tl~eDRR~Av~~Lk~~sk~--y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~  110 (651)
T 3grl_A           34 TLLDDRRNAVRALKSLSKK--YRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG  110 (651)
T ss_dssp             CSHHHHHHHHHHHHHTTTT--TTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred             cchhHHHHHHHHHHHHHHH--hHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence            3457899999999999853  44443 356789999999775  66889999999998654 322               


Q ss_pred             --HHHHH-HhcCChHHHHHhccCCc--hHHHHHHHHHHccCC--hhhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHH
Q psy12638        104 --LREKI-IKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIE--DRVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVAL  175 (334)
Q Consensus       104 --~r~~i-v~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~--~~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~l  175 (334)
                        +-+.+ .+.+.|+.|+.+|++++  .+-+++.+|..|+..  ++++..|-. .+||+.||++|.. +.+.++.+++.+
T Consensus       111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallL  189 (651)
T 3grl_A          111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLL  189 (651)
T ss_dssp             HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHH
Confidence              11233 36788999999997665  478899999999875  347888875 5899999999974 678888999999


Q ss_pred             HHHHccCcchHH-HHHhcCchHHHHHHHhcCCh---HH----HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCcc
Q psy12638        176 CINLALNSRNAE-LMLKNRQLELLMIQAFTQKN---IL----LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDE  244 (334)
Q Consensus       176 l~nLs~~~~n~~-~i~~~~gl~~Lv~~l~~~~d---~~----~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~  244 (334)
                      +.+|+.+..+.+ .++-+|+|+.|++.+..-..   ..    .+.++.||..++...|. |  .+++++|..++...+ +
T Consensus       190 L~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~-~  268 (651)
T 3grl_A          190 LQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD-E  268 (651)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS-C
T ss_pred             HHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc-c
Confidence            999987766654 45567999999999864221   12    37789999999987777 6  468888888775332 2


Q ss_pred             c------hhHHhhcHHHHHHHHHHhcC-------CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch
Q psy12638        245 N------IKLECLGTLEVINFIGTAAS-------DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS  311 (334)
Q Consensus       245 ~------~~ve~Lg~leav~~lg~la~-------~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~  311 (334)
                      .      ...+..+.++   ++..+..       .+.+++.+.+.|+++.|++++.+....+++..+++.+++.+.+.++
T Consensus       269 ~~~W~~Qk~~N~~~~L~---iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~  345 (651)
T 3grl_A          269 NSGWSAQKVTNLHLMLQ---LVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ  345 (651)
T ss_dssp             SSCCCHHHHHHHHHHHH---HHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHHHH---HHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH
Confidence            2      2344444443   3333322       2346788999999999999999877788999999999999998777


Q ss_pred             h-hHHHhh
Q psy12638        312 C-QNYLIK  318 (334)
Q Consensus       312 ~-~~~i~~  318 (334)
                      . ++.+..
T Consensus       346 ~~Q~~fa~  353 (651)
T 3grl_A          346 VNQDYFAS  353 (651)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            4 554443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.16  E-value=4.9e-10  Score=113.41  Aligned_cols=243  Identities=16%  Similarity=0.174  Sum_probs=178.9

Q ss_pred             HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-h-hHHHHHHhc-CChHHHHHhccCC--chHHHHHHHHHHccCC-h
Q psy12638         68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-T-NLREKIIKI-GFLPKLVSLLEEG--KHQKIILQLLYHLSIE-D  141 (334)
Q Consensus        68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~-~~r~~iv~~-g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~-~  141 (334)
                      .+.+.|+.|+.+|++.+..++-.|+++|..|+.+ + ++++.|... ++||.||.+|+++  ..|.-++.+|.+|+.+ .
T Consensus       119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~  198 (651)
T 3grl_A          119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG  198 (651)
T ss_dssp             HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH
Confidence            4578899999999999999999999999999986 4 489999965 9999999999754  5688899999999886 5


Q ss_pred             hhhhHhhccCcHHHHHHHhccCC---CCchHHHHHHHHHHHc-cCcchHHHHHhcCchHHHHHHHhcCChH---------
Q psy12638        142 RVKAMFAYTNCMSLLMNMLLVEQ---DDETDNVLVALCINLA-LNSRNAELMLKNRQLELLMIQAFTQKNI---------  208 (334)
Q Consensus       142 ~~r~~i~~t~~i~~Lv~LL~~~~---~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~~Lv~~l~~~~d~---------  208 (334)
                      +.+..++..|+++.|++++....   +..+.++++.++.||. .|+.|+..+.|.|+++.|..++....+.         
T Consensus       199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~  278 (651)
T 3grl_A          199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT  278 (651)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence            77888888999999999997532   2356677888888885 5667999999999999998776433221         


Q ss_pred             ---HHHHHHHHHhcCCCc------hhh-h--hhhHHHHHHHhhcCCc-cchhHHhhcHHHHHHHHHHhcC-CcchHHHhh
Q psy12638        209 ---LLLKVIRNMSIHSNV------KHY-F--VDYIGDIANCVQKEKD-ENIKLECLGTLEVINFIGTAAS-DPISAEHFC  274 (334)
Q Consensus       209 ---~~~k~l~nLa~~~~~------~~~-f--~~~i~~L~~~l~~~~~-~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~  274 (334)
                         .++.++|-+......      .|. |  .+.+..|++++...+. .+...      +|+.++|.+.+ ++..+..|.
T Consensus       279 N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~------~Al~tla~~irgN~~~Q~~fa  352 (651)
T 3grl_A          279 NLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT------ETINTVSEVIRGCQVNQDYFA  352 (651)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH------HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH------HHHHHHHHHHhCCHHHHHHHh
Confidence               135667776665321      122 3  4788888888765442 22332      35566677777 666777777


Q ss_pred             hCC-----chHHHHHH----hccccCCchHHHHHHHHHHHHHcCch-hhHHHh
Q psy12638        275 KNS-----TVDLLINL----LKEMQEDDEIVLQILYVFYQICRHAS-CQNYLI  317 (334)
Q Consensus       275 ~~g-----~I~~Lv~L----L~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~  317 (334)
                      +..     -.|.++.+    +++ ...-++-..+++||.+...+++ .+..+.
T Consensus       353 ~~~vp~~~~~p~li~lL~~~~~~-~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~  404 (651)
T 3grl_A          353 SVNAPSNPPRPAIVVLLMSMVNE-RQPFVLRCAVLYCFQCFLYKNQKGQGEIV  404 (651)
T ss_dssp             HCEESSSSCEEHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hccCCCCCCcChHHHHHHHHhcc-cccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            653     24556665    433 3345777888999999986665 444443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.44  E-value=1.2e-06  Score=90.38  Aligned_cols=95  Identities=11%  Similarity=0.086  Sum_probs=82.2

Q ss_pred             HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHH-HhccC--CchHHHHHHHHHHccCC--hh
Q psy12638         68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLV-SLLEE--GKHQKIILQLLYHLSIE--DR  142 (334)
Q Consensus        68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv-~lL~~--~~~~~~al~~L~~LS~~--~~  142 (334)
                      ...+.|.|+++.|+|++...+..|+.+|.||+.|++.|..+.+.|+|++++ .+|.+  ++.+..|+.+|-||+.+  .+
T Consensus        31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            334467788899999999999999999999999999999999999998865 66754  45789999999999987  47


Q ss_pred             hhhHhhccCcHHHHHHHhcc
Q psy12638        143 VKAMFAYTNCMSLLMNMLLV  162 (334)
Q Consensus       143 ~r~~i~~t~~i~~Lv~LL~~  162 (334)
                      .+..+.+.|.+++|..++.+
T Consensus       111 ~~~~l~~~~il~~L~~~l~~  130 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAAKA  130 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHh
Confidence            88899999999999999853

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.43  E-value=4.2e-07  Score=93.82  Aligned_cols=155  Identities=9%  Similarity=0.100  Sum_probs=123.3

Q ss_pred             eecccCcchhHHHHHHHhcccchhhHHHhHhCCcchHHH-hhccCCChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChH
Q psy12638         39 YGLIVPKSKREGRQDSRKLSVYHVNKEQMANLNLIEKLP-RILMIEDSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLP  115 (334)
Q Consensus        39 ~~~~~~~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv-~LL~~~~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip  115 (334)
                      +-+..++.|..|...|.+++..++++..+...|+|.+++ ++|...+.+++..|+.+|-||+.+  ++.+..|++.|++|
T Consensus        43 L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~  122 (684)
T 4gmo_A           43 LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLT  122 (684)
T ss_dssp             HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHH
Confidence            445667889999999999999999999999999998865 688999999999999999999986  59999999999999


Q ss_pred             HHHHhccCC-----------------------chHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCC--CCchH
Q psy12638        116 KLVSLLEEG-----------------------KHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQ--DDETD  169 (334)
Q Consensus       116 ~Lv~lL~~~-----------------------~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~--~~~~~  169 (334)
                      +|..+++..                       ...+.++.+|++||. .++....+...+++|.|+..|.+..  ..++.
T Consensus       123 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~  202 (684)
T 4gmo_A          123 AIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIY  202 (684)
T ss_dssp             HHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHH
T ss_pred             HHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHH
Confidence            999998421                       023346788899985 4667788888999999999986432  23465


Q ss_pred             HHHHHHHHHHccCcc-hHHHHHhcC
Q psy12638        170 NVLVALCINLALNSR-NAELMLKNR  193 (334)
Q Consensus       170 ~~~~~ll~nLs~~~~-n~~~i~~~~  193 (334)
                      ..++..+++++.+.. ..+.+.+.+
T Consensus       203 ~~a~~~L~~ls~dn~~~~~~i~~~~  227 (684)
T 4gmo_A          203 EEAISCLTTLSEDNLKVGQAITDDQ  227 (684)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhccCHHHHHHHHhcc
Confidence            666678888877644 455555544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.24  E-value=5.6e-05  Score=68.25  Aligned_cols=63  Identities=14%  Similarity=-0.002  Sum_probs=45.3

Q ss_pred             HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCC
Q psy12638         68 ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIE  140 (334)
Q Consensus        68 ~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~  140 (334)
                      .+.+.++.|++.|.+++..++..|+..|.++..          .+.+|.|+++|+++  ..+..|+..|..+...
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~   84 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   84 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            445678888888888888888888888888762          23577778888544  4567777777777643

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.96  E-value=0.00022  Score=61.49  Aligned_cols=188  Identities=8%  Similarity=0.015  Sum_probs=121.3

Q ss_pred             hCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhH
Q psy12638         69 NLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAM  146 (334)
Q Consensus        69 ~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~  146 (334)
                      ..+.++.|+++|.+++..++..|+..|..+..          .+.+|.|+++|+++  ..+..|+..|..+..       
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            35689999999999999999999999998764          46899999999654  468888888877653       


Q ss_pred             hhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhh
Q psy12638        147 FAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHY  226 (334)
Q Consensus       147 i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~  226 (334)
                         .+.++.|+++|.+ ++..+...++..+.++..          .+.++.|+..+.+.+..+-..+++.|+....    
T Consensus        80 ---~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           80 ---ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             ---GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             ---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence               3588999999964 566666666555555532          2467777776544333333333333332211    


Q ss_pred             hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHH
Q psy12638        227 FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQI  306 (334)
Q Consensus       227 f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l  306 (334)
                       .+.++.|.+.+...+  .. +-.    .++.+++.+..          ...++.|..+++.  ++.++...+..++..+
T Consensus       142 -~~~~~~L~~~l~d~~--~~-vr~----~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 -ERAVEPLIKALKDED--GW-VRQ----SAADALGEIGG----------ERVRAAMEKLAET--GTGFARKVAVNYLETH  201 (211)
T ss_dssp             -GGGHHHHHHHTTCSS--HH-HHH----HHHHHHHHHCS----------HHHHHHHHHHHHH--CCHHHHHHHHHHHHC-
T ss_pred             -HHHHHHHHHHHcCCC--HH-HHH----HHHHHHHHhCc----------hhHHHHHHHHHhC--CCHHHHHHHHHHHHhc
Confidence             245677777664322  21 111    35667777742          2357889998873  4567777778888887


Q ss_pred             HcCch
Q psy12638        307 CRHAS  311 (334)
Q Consensus       307 ~~~~~  311 (334)
                      ..++.
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            64443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.95  E-value=0.00037  Score=62.76  Aligned_cols=111  Identities=3%  Similarity=-0.076  Sum_probs=63.7

Q ss_pred             chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH-hccC-
Q psy12638         46 SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS-LLEE-  123 (334)
Q Consensus        46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~-lL~~-  123 (334)
                      .|..|+..|.++.          ..++++.|++++.+++..++..|+.+|.++..+++.-..     ++|.|.+ ++++ 
T Consensus        39 vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-----l~~~L~~~~~~d~  103 (280)
T 1oyz_A           39 KRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-----VFNILNNMALNDK  103 (280)
T ss_dssp             HHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-----HHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-----HHHHHHHHHhcCC
Confidence            3556777777764          235788999999999999999999999998754332111     2233332 2333 


Q ss_pred             -CchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHH
Q psy12638        124 -GKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALC  176 (334)
Q Consensus       124 -~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll  176 (334)
                       +..+..++..|.++...+..    .....++.|+.++.+ ++..+...++..+
T Consensus       104 ~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d-~~~~vR~~a~~aL  152 (280)
T 1oyz_A          104 SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFD-KSTNVRRATAFAI  152 (280)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTC-SCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence             34566677777776521100    011245666666643 4444444333333

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.91  E-value=0.00037  Score=70.83  Aligned_cols=102  Identities=18%  Similarity=0.178  Sum_probs=73.8

Q ss_pred             hHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhccC--C
Q psy12638         48 REGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEE--G  124 (334)
Q Consensus        48 ~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~~--~  124 (334)
                      ..|+++|.++.. +    .|. ..+++.+.+++.+.++-+++.|+.+++++.. +++.    ++ +++|.+.++|.+  +
T Consensus       125 ~lAL~~L~~i~~-~----~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----v~-~~~~~l~~lL~D~d~  193 (618)
T 1w63_A          125 GLALCTLGCMGS-S----EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----ME-MFLPATKNLLNEKNH  193 (618)
T ss_dssp             HHHHHHHHHHCC-H----HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----GG-GGGGGTTTSTTCCCH
T ss_pred             HHHHHHHHhcCC-H----HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----HH-HHHHHHHHHhCCCCH
Confidence            356666666542 1    222 3568889999999999999999999999985 3443    22 789999999964  4


Q ss_pred             chHHHHHHHHHHccCChh-hhhHhhccCcHHHHHHHhcc
Q psy12638        125 KHQKIILQLLYHLSIEDR-VKAMFAYTNCMSLLMNMLLV  162 (334)
Q Consensus       125 ~~~~~al~~L~~LS~~~~-~r~~i~~t~~i~~Lv~LL~~  162 (334)
                      ..+..|+.+|+.++..+. ....+  ...+|.++++|.+
T Consensus       194 ~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~  230 (618)
T 1w63_A          194 GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKN  230 (618)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHH
Confidence            568889999999987642 22233  3578888888763

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.85  E-value=0.00011  Score=74.25  Aligned_cols=67  Identities=21%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCCh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIED  141 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~  141 (334)
                      +++.+.+++.++++.+++.|+.+|.++... ++.   +...+++|.+.++|+++  ..+..|+.+|++++.++
T Consensus       122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence            456788999999999999999999999753 442   23368899999999654  56888999999998764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.82  E-value=0.00026  Score=69.37  Aligned_cols=241  Identities=16%  Similarity=0.192  Sum_probs=146.3

Q ss_pred             HHhhccC-CChhHHHHHHHHHHhhcCChhHHHHHHhcC--ChHHHHHhccC--------------C-----chHHHHHHH
Q psy12638         76 LPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIG--FLPKLVSLLEE--------------G-----KHQKIILQL  133 (334)
Q Consensus        76 Lv~LL~~-~~~~l~~~al~~L~NLS~d~~~r~~iv~~g--~Ip~Lv~lL~~--------------~-----~~~~~al~~  133 (334)
                      +...|.. ++.+.+..++++|.-|...++.|..+.+.+  .+|+++++++.              +     ..+..++-.
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~  251 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL  251 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence            3444444 235667789999999999999999998654  48888766531              1     125667788


Q ss_pred             HHHccCChhhhhHhhccCcH--HHHHHHhccCCCCchHHHHHHHHHHHccCc-----chHH-HHHhcCchHHHHHHHhc-
Q psy12638        134 LYHLSIEDRVKAMFAYTNCM--SLLMNMLLVEQDDETDNVLVALCINLALNS-----RNAE-LMLKNRQLELLMIQAFT-  204 (334)
Q Consensus       134 L~~LS~~~~~r~~i~~t~~i--~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-----~n~~-~i~~~~gl~~Lv~~l~~-  204 (334)
                      ++-||++++.-..+...+.+  +.|++++....-+.+-.-+++.+.||....     .... .+..+++ ++.++.+.. 
T Consensus       252 iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~r  330 (480)
T 1ho8_A          252 IWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSER  330 (480)
T ss_dssp             HHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSS
T ss_pred             HHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhC
Confidence            99999999888888777643  778888887655555555567788996543     2222 3434445 455566543 


Q ss_pred             -CChHHHHHHHHHHhcCC----CchhhhhhhHHHHHHHhhcC----CccchhHHhhcHHHHHHHHHHhcCCcchHHHhhh
Q psy12638        205 -QKNILLLKVIRNMSIHS----NVKHYFVDYIGDIANCVQKE----KDENIKLECLGTLEVINFIGTAASDPISAEHFCK  275 (334)
Q Consensus       205 -~~d~~~~k~l~nLa~~~----~~~~~f~~~i~~L~~~l~~~----~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~  275 (334)
                       -.|+.+..-+..+...=    .....|.+|...+-.-..+.    ..++|=-|-..-         + .+.++      
T Consensus       331 k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k---------f-~e~~~------  394 (480)
T 1ho8_A          331 KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE---------F-KKDNY------  394 (480)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG---------G-SSGGG------
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH---------H-Hhcch------
Confidence             24555433333322211    11111555555543211111    112222222100         0 12222      


Q ss_pred             CCchHHHHHHhcccc-------CCchHHHHH-HHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        276 NSTVDLLINLLKEMQ-------EDDEIVLQI-LYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       276 ~g~I~~Lv~LL~~~~-------~dde~vlqi-~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                       .++..|+++|.+..       +.|..+++| ++=+|.+++|-+....++.+-++-...++||.++|
T Consensus       395 -~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d  460 (480)
T 1ho8_A          395 -KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD  460 (480)
T ss_dssp             -HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS
T ss_pred             -HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC
Confidence             27889999997431       345566665 88999999887866678888888878889998765

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.81  E-value=7.7e-05  Score=78.13  Aligned_cols=254  Identities=14%  Similarity=0.156  Sum_probs=141.2

Q ss_pred             CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHh-------cCChHHHHHhccCC--chHHHHHHHHHHccCC
Q psy12638         70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK-------IGFLPKLVSLLEEG--KHQKIILQLLYHLSIE  140 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~-------~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~  140 (334)
                      .+.++.|++.+.+++...++.++.+|..++.+.  ...+.+       .+++|.++++++++  ..|..|+..|..+...
T Consensus       127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~--~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS--AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS  204 (852)
T ss_dssp             TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH--TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--HHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            357889999999999999999999999998653  122211       34678888888644  5688888888877643


Q ss_pred             hhhhhHhhc-cCcHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHH---HHHHHH
Q psy12638        141 DRVKAMFAY-TNCMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIR  215 (334)
Q Consensus       141 ~~~r~~i~~-t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~  215 (334)
                      ... ..... .+.++.+.+++. .+++++...+...+.+++.. ++......+ +.++.++..+.+.++.+   ++..+.
T Consensus       205 ~~~-~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~  281 (852)
T 4fdd_A          205 RTQ-ALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWL  281 (852)
T ss_dssp             TCH-HHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             ccH-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHH
Confidence            221 11111 246778888775 45667777666677776432 211111111 23444444433333333   255567


Q ss_pred             HHhcCCCchhhhh----hhHHHHHHHhh----------cC--C--c----------cchhHHhhcHH-------------
Q psy12638        216 NMSIHSNVKHYFV----DYIGDIANCVQ----------KE--K--D----------ENIKLECLGTL-------------  254 (334)
Q Consensus       216 nLa~~~~~~~~f~----~~i~~L~~~l~----------~~--~--~----------~~~~ve~Lg~l-------------  254 (334)
                      +++.+...++.+.    ..++.++..+.          ..  +  .          ......+++.+             
T Consensus       282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~  361 (852)
T 4fdd_A          282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHIL  361 (852)
T ss_dssp             HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            7776643333222    33333444331          11  0  0          00112222221             


Q ss_pred             ----------------HHHHHHHHhcCCcchHHHh--hhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhh--H
Q psy12638        255 ----------------EVINFIGTAASDPISAEHF--CKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQ--N  314 (334)
Q Consensus       255 ----------------eav~~lg~la~~~~~~~~l--~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~--~  314 (334)
                                      .++.++|.++....  +.+  .-.+++|.++..++.  ++..+.-.++.+++.++.+-+..  .
T Consensus       362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--~~~~~~l~~~l~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~~  437 (852)
T 4fdd_A          362 PLLKELLFHHEWVVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLSD--KKALVRSITCWTLSRYAHWVVSQPPD  437 (852)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHTTTTTH--HHHGGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhccchHH
Confidence                            57888999987433  111  113467888887753  34467777899999988543211  1


Q ss_pred             HHhhcCCcHHHHHHhhhcCC
Q psy12638        315 YLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       315 ~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ..+.  .+...|++.|+|.+
T Consensus       438 ~~~~--~ll~~L~~~L~d~~  455 (852)
T 4fdd_A          438 TYLK--PLMTELLKRILDSN  455 (852)
T ss_dssp             TTHH--HHHHHHHHHHTCSS
T ss_pred             HHHH--HHHHHHHHHHhCCC
Confidence            1111  24446777776653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.81  E-value=0.00052  Score=58.57  Aligned_cols=182  Identities=8%  Similarity=0.016  Sum_probs=117.2

Q ss_pred             CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHh
Q psy12638         70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMF  147 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i  147 (334)
                      .+..+.++++|.+++..++..|+..|..+..          .+.+|.|+++|+++  ..+..|+..|..+..        
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            3567889999999999999999999998764          36789999999644  467778888876643        


Q ss_pred             hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhh
Q psy12638        148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYF  227 (334)
Q Consensus       148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f  227 (334)
                        .++++.|+++|.+ ++..+...++..+.++..          .+.++.|+..+.+.+..+-..+++.++....     
T Consensus        75 --~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  136 (201)
T 3ltj_A           75 --ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  136 (201)
T ss_dssp             --GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred             --HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence              3589999999974 566676666666655421          2367777776544333332333333332211     


Q ss_pred             hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHH
Q psy12638        228 VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQI  306 (334)
Q Consensus       228 ~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l  306 (334)
                      .+.++.|...+...+  .. +-.    .++.++|.+.. +         ..++.|.++++.  .+.++...++.++..+
T Consensus       137 ~~~~~~L~~~l~d~~--~~-vr~----~A~~aL~~~~~-~---------~~~~~L~~~l~d--~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 ERAVEPLIKALKDED--GW-VRQ----SAADALGEIGG-E---------RVRAAMEKLAET--GTGFARKVAVNYLETH  196 (201)
T ss_dssp             GGGHHHHHHHTTCSS--HH-HHH----HHHHHHHHHCS-H---------HHHHHHHHHHHH--CCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCC--HH-HHH----HHHHHHHHhCc-h---------hHHHHHHHHHhC--CCHHHHHHHHHHHHHH
Confidence            245667777664322  11 111    36677777732 1         257888888863  4456666666666654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.59  E-value=0.0005  Score=71.97  Aligned_cols=273  Identities=10%  Similarity=0.081  Sum_probs=146.6

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--  124 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--  124 (334)
                      |+-|...|..++....  ..+. ..+++.+.+++.+++...++.|+.+|.+++....-.-.-.-.+++|.++.+++++  
T Consensus       338 r~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~  414 (852)
T 4fdd_A          338 RKCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA  414 (852)
T ss_dssp             HHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCH
Confidence            5567778877775322  1222 2467788888899999999999999999997643211112256788888888655  


Q ss_pred             chHHHHHHHHHHccCChhhh-hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchH-HHHHhcCchHHHHHHH
Q psy12638        125 KHQKIILQLLYHLSIEDRVK-AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNA-ELMLKNRQLELLMIQA  202 (334)
Q Consensus       125 ~~~~~al~~L~~LS~~~~~r-~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~-~~i~~~~gl~~Lv~~l  202 (334)
                      ..+..|+.+|.+++..-... ..-...+.++.|++.+.. ++..++..+...+.+++...... .... .+-++.|+..+
T Consensus       415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l  492 (852)
T 4fdd_A          415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAF  492 (852)
T ss_dssp             HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHH
Confidence            46888888898888642111 011113477888888864 45677666666666765332211 1011 12344444444


Q ss_pred             hcCChHH---HHHHHHHHhcCCCch---hh-hhhhHHHHHHHhhc--CCccchhHHhhcHHHHHHHHHHhcCC--cchHH
Q psy12638        203 FTQKNIL---LLKVIRNMSIHSNVK---HY-FVDYIGDIANCVQK--EKDENIKLECLGTLEVINFIGTAASD--PISAE  271 (334)
Q Consensus       203 ~~~~d~~---~~k~l~nLa~~~~~~---~~-f~~~i~~L~~~l~~--~~~~~~~ve~Lg~leav~~lg~la~~--~~~~~  271 (334)
                      .+.+...   ++.++..++..-+..   .. +...++.+++....  .+..+. ..      ++.+++.++..  ..+..
T Consensus       493 ~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~------~~~~l~~i~~~~g~~~~~  565 (852)
T 4fdd_A          493 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FP------LLECLSSVATALQSGFLP  565 (852)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HH------HHHHHHHHHHHHGGGGHH
T ss_pred             HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HH------HHHHHHHHHHHHhHhHHH
Confidence            4433332   355666666432211   11 23344444433221  111122 11      12223333321  12211


Q ss_pred             HhhhCCchHHHHHHhccc---------------cCCchHHHHHHHHHHHHHcCch--hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        272 HFCKNSTVDLLINLLKEM---------------QEDDEIVLQILYVFYQICRHAS--CQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       272 ~l~~~g~I~~Lv~LL~~~---------------~~dde~vlqi~~~l~~l~~~~~--~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      .+.  .+++.++++++..               .+|.++...++.+++.++..-+  ....+ ...++...+++.++|++
T Consensus       566 ~~~--~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~-~~~~~~~~l~~~l~~~~  642 (852)
T 4fdd_A          566 YCE--PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV-ARSNILTLMYQCMQDKM  642 (852)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHH-HTCCHHHHHHHHTTCSS
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHh-cCCcHHHHHHHHhCCCC
Confidence            111  1345555555431               1255677777888888874333  33333 23467768888888753

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.57  E-value=0.0012  Score=64.71  Aligned_cols=237  Identities=14%  Similarity=0.130  Sum_probs=144.1

Q ss_pred             HHHHHHHhcccchhhHHHhHhCC--cchHHHhhccC---------------C--ChhHHHHHHHHHHhhcCChhHHHHHH
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLN--LIEKLPRILMI---------------E--DSNLQSSTLKLLFNLSFDTNLREKII  109 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g--~I~~Lv~LL~~---------------~--~~~l~~~al~~L~NLS~d~~~r~~iv  109 (334)
                      -++.+|+-|...+++|....+.+  .+|++++++..               +  ..+++..++-+++-|||+++.-+.+.
T Consensus       187 i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~  266 (480)
T 1ho8_A          187 VCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELV  266 (480)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            37788888888899998887653  46777654431               1  35789999999999999999999999


Q ss_pred             hcCCh--HHHHHhccC---CchHHHHHHHHHHccCCh-----h-hhhHhhccCcHHHHHHHhccCCCC--chHHHHHHHH
Q psy12638        110 KIGFL--PKLVSLLEE---GKHQKIILQLLYHLSIED-----R-VKAMFAYTNCMSLLMNMLLVEQDD--ETDNVLVALC  176 (334)
Q Consensus       110 ~~g~I--p~Lv~lL~~---~~~~~~al~~L~~LS~~~-----~-~r~~i~~t~~i~~Lv~LL~~~~~~--~~~~~~~~ll  176 (334)
                      +.+++  +.|+.+++.   +..-..++++|.||....     . .+.++...++ +++++.|......  ++..+.-.+.
T Consensus       267 ~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~  345 (480)
T 1ho8_A          267 QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLK  345 (480)
T ss_dssp             TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            88855  788888853   456788999999997653     1 1223322334 6667777654433  3322221111


Q ss_pred             HHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCC----------chhhh----hhhHHHHHHHhhcC-
Q psy12638        177 INLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN----------VKHYF----VDYIGDIANCVQKE-  241 (334)
Q Consensus       177 ~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~----------~~~~f----~~~i~~L~~~l~~~-  241 (334)
                      -.|      .+.+.+---|..-..-+.+|.           =.|.+          |..+|    .+.+..|++++.+. 
T Consensus       346 e~L------~~~~~~ltsfDeY~~El~sG~-----------L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~  408 (480)
T 1ho8_A          346 EIL------ENEYQELTSFDEYVAELDSKL-----------LCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV  408 (480)
T ss_dssp             HHH------HHHHHTCCHHHHHHHHHHHTC-----------CCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred             HHH------HHHHHhcccHHHHHHHHhcCC-----------cccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence            111      111111111222222222221           11111          11112    25667777777531 


Q ss_pred             ------CccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638        242 ------KDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       242 ------~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~  309 (334)
                            +..+..+-++    |+-=+|-+++ .|..+..+.+.|+=..+.+|+.  .+|+++.-+++.|+..+..|
T Consensus       409 ~~~~~~~s~d~~~laV----Ac~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~--h~d~~Vr~~AL~avQklm~~  477 (480)
T 1ho8_A          409 RNGDVNAKQEKIIIQV----ALNDITHVVELLPESIDVLDKTGGKADIMELLN--HSDSRVKYEALKATQAIIGY  477 (480)
T ss_dssp             HTTCCCSHHHHHHHHH----HHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS--CSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCcceEEe----ecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Confidence                  0122222111    3344788888 7888888888898777778886  67899999999999988654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.47  E-value=0.0029  Score=54.28  Aligned_cols=150  Identities=11%  Similarity=0.029  Sum_probs=99.1

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG  124 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~  124 (334)
                      ..|..|+..|.++..          .++++.|++++.+++..++..|+.+|.++..          .+.+|.|+++|+++
T Consensus        34 ~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~   93 (211)
T 3ltm_A           34 YVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDE   93 (211)
T ss_dssp             HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCC
Confidence            334466666665432          3689999999999999999999999998863          46789999999654


Q ss_pred             --chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHH
Q psy12638        125 --KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQA  202 (334)
Q Consensus       125 --~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l  202 (334)
                        ..+..|+..|..+..          .+.++.|++++. .++..+...++..+.++..          ...++.|+..+
T Consensus        94 ~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l  152 (211)
T 3ltm_A           94 DGWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIGD----------ERAVEPLIKAL  152 (211)
T ss_dssp             SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Confidence              568888888887754          348899999996 4666777666666666531          24677777766


Q ss_pred             hcCChHHHHHHHHHHhcCCCchhhhhhhHHHHHHHhhc
Q psy12638        203 FTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCVQK  240 (334)
Q Consensus       203 ~~~~d~~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~  240 (334)
                      .+.+..+-..++..|..-..     .+.++.|..++..
T Consensus       153 ~d~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~d  185 (211)
T 3ltm_A          153 KDEDGWVRQSAADALGEIGG-----ERVRAAMEKLAET  185 (211)
T ss_dssp             TCSSHHHHHHHHHHHHHHCS-----HHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhCc-----hhHHHHHHHHHhC
Confidence            44333332333333332211     2345556665543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.38  E-value=0.0018  Score=65.23  Aligned_cols=215  Identities=9%  Similarity=0.043  Sum_probs=128.2

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccC--CchHHHHHHHHHHccCChhhhhHhhc
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEE--GKHQKIILQLLYHLSIEDRVKAMFAY  149 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~--~~~~~~al~~L~~LS~~~~~r~~i~~  149 (334)
                      ++..+.+-+.++++.++..|+++|+++. .++..+.+     +|.+.+++++  |..|..|+..++++....  ...+..
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~  158 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVED  158 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhccc
Confidence            5678888999999999999999999997 45544443     5889999964  457888888898886532  122333


Q ss_pred             cCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc-hH-HHHHhcCchHHHHHHHhcCChHH-HHHHHHHHhcCCCchhh
Q psy12638        150 TNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR-NA-ELMLKNRQLELLMIQAFTQKNIL-LLKVIRNMSIHSNVKHY  226 (334)
Q Consensus       150 t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~-n~-~~i~~~~gl~~Lv~~l~~~~d~~-~~k~l~nLa~~~~~~~~  226 (334)
                      .+.++.|.++|. +++..+...++.++..+..+.. .. ..+. .+.+..|+..+.+. +++ ..++++-++...+....
T Consensus       159 ~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~-~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~  235 (591)
T 2vgl_B          159 QGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLN-PQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDR  235 (591)
T ss_dssp             HHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCH-HHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHH
T ss_pred             ccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhcc-HHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChH
Confidence            467899999996 4666777777777777765432 10 0000 12355666665443 444 35556665555432211


Q ss_pred             -hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC----CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHH
Q psy12638        227 -FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS----DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILY  301 (334)
Q Consensus       227 -f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~----~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~  301 (334)
                       ..+.++.+...+. +.+.....      +|+.+++.++.    +++..+.+. ..+.++|+.++.   .|.++..-++.
T Consensus       236 ~~~~~l~~l~~~l~-~~~~~V~~------ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~---~d~~vr~~aL~  304 (591)
T 2vgl_B          236 EAQSICERVTPRLS-HANSAVVL------SAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS---GEPEVQYVALR  304 (591)
T ss_dssp             HHHHHHHHHTTCSC-SSTTHHHH------HHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT---SCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCChHHHH------HHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc---CCccHHHHHHH
Confidence             1233333333332 22223322      45666677653    333333222 235677777663   45567776777


Q ss_pred             HHHHHHc
Q psy12638        302 VFYQICR  308 (334)
Q Consensus       302 ~l~~l~~  308 (334)
                      +++.++.
T Consensus       305 ~l~~i~~  311 (591)
T 2vgl_B          305 NINLIVQ  311 (591)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777763

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.37  E-value=0.0052  Score=62.28  Aligned_cols=149  Identities=13%  Similarity=0.105  Sum_probs=96.0

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCC-hhhhhHhh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIE-DRVKAMFA  148 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~-~~~r~~i~  148 (334)
                      ++..+.+-+.++++.++..|+++|+++.. ++    |. ..++|.+.++|+  +|..|..|+..++++... ++.   + 
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~---v-  177 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL---M-  177 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG---G-
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH---H-
Confidence            66778888899999999999999999984 33    33 356788889995  455788888889888653 221   1 


Q ss_pred             ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch-HHHHHhcCchHHHHHHHhc--------------CChHHH---
Q psy12638        149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN-AELMLKNRQLELLMIQAFT--------------QKNILL---  210 (334)
Q Consensus       149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n-~~~i~~~~gl~~Lv~~l~~--------------~~d~~~---  210 (334)
                       .+.++.+.++|. +++..+...++.++.-+...... ...+.  ..++.++..+.+              ..+|++   
T Consensus       178 -~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~  253 (618)
T 1w63_A          178 -EMFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR  253 (618)
T ss_dssp             -GGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred             -HHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence             156777778885 45566655555666666544221 12222  467777776553              236653   


Q ss_pred             -HHHHHHHhcCCCchh-hhhhhHHHH
Q psy12638        211 -LKVIRNMSIHSNVKH-YFVDYIGDI  234 (334)
Q Consensus       211 -~k~l~nLa~~~~~~~-~f~~~i~~L  234 (334)
                       +++++.++..++... .+.+.+..+
T Consensus       254 il~~L~~l~~~~~~~~~~~~~~L~~l  279 (618)
T 1w63_A          254 ILRLLRILGRNDDDSSEAMNDILAQV  279 (618)
T ss_dssp             HHHHHHHHTTTCHHHHHTTHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence             667777777654322 233444444

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.36  E-value=0.0019  Score=65.75  Aligned_cols=180  Identities=12%  Similarity=0.073  Sum_probs=98.0

Q ss_pred             chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc---
Q psy12638         46 SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE---  122 (334)
Q Consensus        46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~---  122 (334)
                      -|+.|+.++.++..  .+.+.+...+.++.+.++|.+++..++..|+.+|+.++.+..  ..  -...+|++++.|.   
T Consensus       164 VRK~A~~al~kl~~--~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~--~~~~~~~~~~~L~~ll  237 (621)
T 2vgl_A          164 VKQSAALCLLRLYR--TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EE--FKTSVSLAVSRLSRIV  237 (621)
T ss_dssp             HHHHHHHHHHHHHH--HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HH--HTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HH--HHHHHHHHHHHHHHHH
Confidence            34566666666532  233333335889999999999999999999999999986421  11  1356777776553   


Q ss_pred             ----------------CCchHHHHHHHHHHccC--ChhhhhHhhccCcHHHHHHHhccCC----------CCchHHHHHH
Q psy12638        123 ----------------EGKHQKIILQLLYHLSI--EDRVKAMFAYTNCMSLLMNMLLVEQ----------DDETDNVLVA  174 (334)
Q Consensus       123 ----------------~~~~~~~al~~L~~LS~--~~~~r~~i~~t~~i~~Lv~LL~~~~----------~~~~~~~~~~  174 (334)
                                      +|=.|-..+.+|..++.  +++.+..+.  +.++.++..+...+          ...+--+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~  315 (621)
T 2vgl_A          238 TSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS  315 (621)
T ss_dssp             HCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHH
Confidence                            12246667777777764  234444332  24444444332111          1133334555


Q ss_pred             HHHHHccCcchHHHHHhcCchHHHHHHHhcCChHH----HHHHHHHHhcCCCchhhhhhhHHHHHHHhh
Q psy12638        175 LCINLALNSRNAELMLKNRQLELLMIQAFTQKNIL----LLKVIRNMSIHSNVKHYFVDYIGDIANCVQ  239 (334)
Q Consensus       175 ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~  239 (334)
                      +++.+..+++-..     .++..|..++.+ .++-    .+..+..++...+....|.++...++..+.
T Consensus       316 ~i~~l~~~~~~~~-----~~~~~L~~~L~~-~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~  378 (621)
T 2vgl_A          316 LIIHHDSEPNLLV-----RACNQLGQFLQH-RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK  378 (621)
T ss_dssp             HHHHHCCCHHHHH-----HHHHHHHHHSSC-SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT
T ss_pred             HHHhcCCcHHHHH-----HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc
Confidence            5666653332222     245566666543 4442    355566666655432224444444444443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.36  E-value=0.005  Score=52.30  Aligned_cols=119  Identities=14%  Similarity=0.060  Sum_probs=86.8

Q ss_pred             chhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC-
Q psy12638         46 SKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG-  124 (334)
Q Consensus        46 ~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~-  124 (334)
                      .|..|+..|.++..          .++++.|++++.+++..++..|+..|..+..          .+.+|.|+++|+++ 
T Consensus        30 vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~   89 (201)
T 3ltj_A           30 VRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDED   89 (201)
T ss_dssp             HHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCC
Confidence            44566677765432          3689999999999999999999999998763          35789999999654 


Q ss_pred             -chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHh
Q psy12638        125 -KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAF  203 (334)
Q Consensus       125 -~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~  203 (334)
                       ..+..|+..|..+..          .++++.|++++. .++..+...++..+.++..          .+.++.|+..+.
T Consensus        90 ~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~  148 (201)
T 3ltj_A           90 GWVRQSAAVALGQIGD----------ERAVEPLIKALK-DEDWFVRIAAAFALGEIGD----------ERAVEPLIKALK  148 (201)
T ss_dssp             HHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCc----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHc
Confidence             478888888887654          348999999996 4566776666666666531          246677776664


Q ss_pred             cC
Q psy12638        204 TQ  205 (334)
Q Consensus       204 ~~  205 (334)
                      +.
T Consensus       149 d~  150 (201)
T 3ltj_A          149 DE  150 (201)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=97.25  E-value=0.012  Score=57.71  Aligned_cols=221  Identities=11%  Similarity=0.090  Sum_probs=124.0

Q ss_pred             CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhh
Q psy12638         71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFA  148 (334)
Q Consensus        71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~  148 (334)
                      .+++.|..++.+++..++..|...|.+++.+...  .-+..-++|.+..+..++  ..|..|+.++..++..-..  . .
T Consensus        87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~-~  161 (588)
T 1b3u_A           87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--A-V  161 (588)
T ss_dssp             GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--H-H
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--H-H
Confidence            4566666777888899999999999999975321  122334567676776543  4577777777777543211  1 1


Q ss_pred             ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHhcCCCchh
Q psy12638        149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKH  225 (334)
Q Consensus       149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~  225 (334)
                      ....+|.+..++. .++..++..++..+..++.......  ....-++.+...+...++.+   ++..+..++..-+...
T Consensus       162 ~~~l~~~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  238 (588)
T 1b3u_A          162 KAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLELDN--VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED  238 (588)
T ss_dssp             HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCHHH--HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcHHh--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence            2345777777775 4667777766666666654332211  12235555555544333322   3555666665433222


Q ss_pred             hhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638        226 YFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ  305 (334)
Q Consensus       226 ~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~  305 (334)
                      .....++.+.+.+.. +  +..+..    .++.++|.++..... . .....++|.+.++++  .++.++...++.+++.
T Consensus       239 ~~~~~~~~l~~~~~d-~--~~~vR~----~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~  307 (588)
T 1b3u_A          239 LEALVMPTLRQAAED-K--SWRVRY----MVADKFTELQKAVGP-E-ITKTDLVPAFQNLMK--DCEAEVRAAASHKVKE  307 (588)
T ss_dssp             HHHHTHHHHHHHHTC-S--SHHHHH----HHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHT--CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccC-C--CHHHHH----HHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhC--CCcHHHHHHHHHHHHH
Confidence            112233334444422 1  222211    255666666642111 1 123347889999886  3455677777889998


Q ss_pred             HHcCc
Q psy12638        306 ICRHA  310 (334)
Q Consensus       306 l~~~~  310 (334)
                      ++..-
T Consensus       308 ~~~~~  312 (588)
T 1b3u_A          308 FCENL  312 (588)
T ss_dssp             HHHTS
T ss_pred             HHHHh
Confidence            88543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.84  E-value=0.016  Score=56.85  Aligned_cols=96  Identities=6%  Similarity=0.096  Sum_probs=53.8

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCCh--hhhhHh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIED--RVKAMF  147 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~--~~r~~i  147 (334)
                      ++|.+.+++.+++..++..|+.+|..++....  .......++|.+..+++++  ..+..|+..|..++..-  +.+...
T Consensus       243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  320 (588)
T 1b3u_A          243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV  320 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC--cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhH
Confidence            55556666666666777777777777764211  1123345688888888654  45777777777665431  111111


Q ss_pred             hccCcHHHHHHHhccCCCCchHH
Q psy12638        148 AYTNCMSLLMNMLLVEQDDETDN  170 (334)
Q Consensus       148 ~~t~~i~~Lv~LL~~~~~~~~~~  170 (334)
                      .....+|.+.+++.. ++..++.
T Consensus       321 ~~~~l~p~l~~~l~d-~~~~vR~  342 (588)
T 1b3u_A          321 IMSQILPCIKELVSD-ANQHVKS  342 (588)
T ss_dssp             HHHTHHHHHHHHHTC-SCHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCHHHHH
Confidence            123456667676653 3444433

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=96.64  E-value=0.046  Score=56.33  Aligned_cols=251  Identities=9%  Similarity=-0.003  Sum_probs=133.8

Q ss_pred             cchhHHHHHHHhcccchhhHHHh--HhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHH--HHHHhcCChHHHHHh
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQM--ANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLR--EKIIKIGFLPKLVSL  120 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m--~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r--~~iv~~g~Ip~Lv~l  120 (334)
                      +.|+.|+.++..++.... +..+  .-..+++.+++.+.++++.++..++.+|.+++..-...  ..-.-..++|.+++.
T Consensus       384 ~~r~~a~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~  462 (861)
T 2bpt_A          384 RNREAAVMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIG  462 (861)
T ss_dssp             HHHHHHHHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHH
Confidence            456677778887775421 1111  11257888999999999999999999999988542110  000112356777777


Q ss_pred             ccC-CchHHHHHHHHHHccCCh------hhhhHhhccCcHHHHHHHhccCC-CCchHHHHHHHHHHHcc-CcchHHHHHh
Q psy12638        121 LEE-GKHQKIILQLLYHLSIED------RVKAMFAYTNCMSLLMNMLLVEQ-DDETDNVLVALCINLAL-NSRNAELMLK  191 (334)
Q Consensus       121 L~~-~~~~~~al~~L~~LS~~~------~~r~~i~~t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nLs~-~~~n~~~i~~  191 (334)
                      +++ +..+..|+..|.+++..-      .....+  .+.++.|++++.+.+ +..++..+...+..+.. .+........
T Consensus       463 l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~  540 (861)
T 2bpt_A          463 LQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA  540 (861)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred             hccChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH
Confidence            754 456777888888776431      111111  235777888886432 24555555555555532 2222222222


Q ss_pred             cCchHHHHHHHhcC--------C----hH------HHHHHHHHHhcCCCch--hhhhhhHHHHHHHhhcCCccchhHHhh
Q psy12638        192 NRQLELLMIQAFTQ--------K----NI------LLLKVIRNMSIHSNVK--HYFVDYIGDIANCVQKEKDENIKLECL  251 (334)
Q Consensus       192 ~~gl~~Lv~~l~~~--------~----d~------~~~k~l~nLa~~~~~~--~~f~~~i~~L~~~l~~~~~~~~~ve~L  251 (334)
                       .-++.+++.+.+.        +    +.      .++.++.+++..-+..  ......++.++..+...+.+.. .+  
T Consensus       541 -~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v-~~--  616 (861)
T 2bpt_A          541 -SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFI-ED--  616 (861)
T ss_dssp             -HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGT-HH--
T ss_pred             -HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcH-HH--
Confidence             2455566655431        1    11      2344555555443321  1122344444555544331112 11  


Q ss_pred             cHHHHHHHHHHhcCC--cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638        252 GTLEVINFIGTAASD--PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       252 g~leav~~lg~la~~--~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~  309 (334)
                         .+..+++.++..  .+....+-  .++|.|.+.++  .++.++...++.+++.++..
T Consensus       617 ---~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          617 ---DVFYAISALAASLGKGFEKYLE--TFSPYLLKALN--QVDSPVSITAVGFIADISNS  669 (861)
T ss_dssp             ---HHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHH--CTTSHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhc--cccHHHHHHHHHHHHHHHHH
Confidence               134455665542  22333332  27888888884  34556777778888877743

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=96.53  E-value=0.061  Score=50.31  Aligned_cols=194  Identities=13%  Similarity=0.094  Sum_probs=121.4

Q ss_pred             HHhhccCCChhHHHHHHHHHHh-hcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhh-ccC
Q psy12638         76 LPRILMIEDSNLQSSTLKLLFN-LSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFA-YTN  151 (334)
Q Consensus        76 Lv~LL~~~~~~l~~~al~~L~N-LS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~-~t~  151 (334)
                      +++-|.+.+.+-++.++.-|.. ++.|.+.-.++++.|++..|++...  ++..+.++++.|.+|=.+..+-.-+. ...
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~  202 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD  202 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence            3444446667778888877877 7779999999999999999999994  56789999999999988866664444 556


Q ss_pred             cHHHHHHHhccCCCCchHHHHHHHHHHHccC-cchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCchhhhhhh
Q psy12638        152 CMSLLMNMLLVEQDDETDNVLVALCINLALN-SRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDY  230 (334)
Q Consensus       152 ~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~-~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~~~f~~~  230 (334)
                      .|..+..++.+ .+..+.+.+++++..+... +.+...+.++                     +++.+...     -.+.
T Consensus       203 fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~~~~lv~~a---------------------v~~v~~~~-----~~~p  255 (339)
T 3dad_A          203 TIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSENNAPLFIRA---------------------VNSVASTT-----GAPP  255 (339)
T ss_dssp             HHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHH---------------------HHHHHHHH-----CCCT
T ss_pred             HHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcccchHHHHH---------------------HHHhhhcc-----CCCc
Confidence            89999999984 6677777777877766433 3344443332                     11111100     0112


Q ss_pred             HHHHHHHhhcCC--ccchhHHhhcHHHHHHHHHHhcCCcc----hHHHhhhCCchHHHHHHhccccCCchHHHHH
Q psy12638        231 IGDIANCVQKEK--DENIKLECLGTLEVINFIGTAASDPI----SAEHFCKNSTVDLLINLLKEMQEDDEIVLQI  299 (334)
Q Consensus       231 i~~L~~~l~~~~--~~~~~ve~Lg~leav~~lg~la~~~~----~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi  299 (334)
                      ...++..+.+.+  +.+..+.++..+   -++-.-+.+.+    ..+.+.+.|+-..+.+.++.+.+|.|++-|.
T Consensus       256 ~~~Lv~~L~~~~~~D~elq~~amtLI---N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql  327 (339)
T 3dad_A          256 WANLVSILEEKNGADPELLVYTVTLI---NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL  327 (339)
T ss_dssp             THHHHHHHTTTTSCCHHHHHHHHHHH---HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHH---HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence            345555554222  234444433222   11111122222    3345677786677777788666777877765

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.53  E-value=0.14  Score=51.89  Aligned_cols=213  Identities=14%  Similarity=0.171  Sum_probs=120.5

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc--cC--CchHHHHHHHHHHccCChhhhhHh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL--EE--GKHQKIILQLLYHLSIEDRVKAMF  147 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL--~~--~~~~~~al~~L~~LS~~~~~r~~i  147 (334)
                      ++..+.+=+.++++..+..|+++|+++.. ++    |.+ .++|.+.++|  .+  |-.|..|+-.++++...+  ...+
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~  183 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS-RE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLV  183 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhc
Confidence            45667777889999999999999999975 33    332 5789999999  54  446787888788886532  2333


Q ss_pred             hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHh----cC-C-----------hHHH-
Q psy12638        148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAF----TQ-K-----------NILL-  210 (334)
Q Consensus       148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~----~~-~-----------d~~~-  210 (334)
                      ...+.++.+.++|. +++..+...++.++..++.+  +.+.+.  ..++.+++.+.    .+ .           +|++ 
T Consensus       184 ~~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~--~~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~q  258 (621)
T 2vgl_A          184 PMGDWTSRVVHLLN-DQHLGVVTAATSLITTLAQK--NPEEFK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS  258 (621)
T ss_dssp             CCCSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHH--CHHHHT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHH
T ss_pred             CchhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHh--ChHHHH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHH
Confidence            33578999999995 45666655555555555332  212111  24444444332    11 1           5664 


Q ss_pred             HHHHHHHhcCCCc---h--hhhhhhHHHHHHHhhcCC--------c--cchhHHhhcHHHHHHHHHHhcCCcchHHHhhh
Q psy12638        211 LKVIRNMSIHSNV---K--HYFVDYIGDIANCVQKEK--------D--ENIKLECLGTLEVINFIGTAASDPISAEHFCK  275 (334)
Q Consensus       211 ~k~l~nLa~~~~~---~--~~f~~~i~~L~~~l~~~~--------~--~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~  275 (334)
                      .++++-++.-.+.   .  ..+.+.+..++..+.+..        +  ...+.      |++.++-.+..+++...    
T Consensus       259 i~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~------ea~~~i~~l~~~~~~~~----  328 (621)
T 2vgl_A          259 VKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLF------EAISLIIHHDSEPNLLV----  328 (621)
T ss_dssp             HHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHH------HHHHHHHHHCCCHHHHH----
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHH------HHHHHHHhcCCcHHHHH----
Confidence            5566655554331   1  113445555554432211        0  02222      34444444443333221    


Q ss_pred             CCchHHHHHHhccccCCchHHHHHHHHHHHHHcCc
Q psy12638        276 NSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHA  310 (334)
Q Consensus       276 ~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~  310 (334)
                       .+++.|..+|.  ..|.++...++.++..++...
T Consensus       329 -~~~~~L~~~L~--~~~~niry~aL~~l~~l~~~~  360 (621)
T 2vgl_A          329 -RACNQLGQFLQ--HRETNLRYLALESMCTLASSE  360 (621)
T ss_dssp             -HHHHHHHHHSS--CSCHHHHHHHHHHHHHHTTCT
T ss_pred             -HHHHHHHHHhc--CCCcchHHHHHHHHHHHHhcc
Confidence             14566666664  345566666677777776543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.49  E-value=0.037  Score=57.15  Aligned_cols=254  Identities=8%  Similarity=-0.016  Sum_probs=134.4

Q ss_pred             cchhHHHHHHHhcccchh-hHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhH----HHHHHhcCChHHHHH
Q psy12638         45 KSKREGRQDSRKLSVYHV-NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNL----REKIIKIGFLPKLVS  119 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~e-nk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~----r~~iv~~g~Ip~Lv~  119 (334)
                      +.|..|..++..++.... ....-.-.+++|.+++.+.+++..++..|+.+|.+++.....    ...  -..++|.|..
T Consensus       381 ~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~  458 (876)
T 1qgr_A          381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIE  458 (876)
T ss_dssp             HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHH
Confidence            456677888888775422 111112245889999999999999999999999999964211    111  1245677777


Q ss_pred             hccC-CchHHHHHHHHHHccCChh------------hhhHhhc--cCcHHHHHHHhccCC--CCchHHHHHHHHHHHccC
Q psy12638        120 LLEE-GKHQKIILQLLYHLSIEDR------------VKAMFAY--TNCMSLLMNMLLVEQ--DDETDNVLVALCINLALN  182 (334)
Q Consensus       120 lL~~-~~~~~~al~~L~~LS~~~~------------~r~~i~~--t~~i~~Lv~LL~~~~--~~~~~~~~~~ll~nLs~~  182 (334)
                      .+++ +..+..|+..|.+++..-.            ....+..  ...+|.|...+....  ...+...+...+..+...
T Consensus       459 ~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~  538 (876)
T 1qgr_A          459 GLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN  538 (876)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHH
Confidence            7754 4567778888888865321            0011111  246777777776432  224433333333333211


Q ss_pred             -cchHHHHHhcCchHHHHHHHhc----------CChH--------HHHHHHHHHhcCCC-ch-hh-hhhhHHHHHHHhhc
Q psy12638        183 -SRNAELMLKNRQLELLMIQAFT----------QKNI--------LLLKVIRNMSIHSN-VK-HY-FVDYIGDIANCVQK  240 (334)
Q Consensus       183 -~~n~~~i~~~~gl~~Lv~~l~~----------~~d~--------~~~k~l~nLa~~~~-~~-~~-f~~~i~~L~~~l~~  240 (334)
                       ......... .-++.+++.+..          ..|+        .++.++..++..-+ .. .. ....++.++..+..
T Consensus       539 ~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~  617 (876)
T 1qgr_A          539 SAKDCYPAVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQS  617 (876)
T ss_dssp             CCSTTHHHHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC--
T ss_pred             CchhhHHHHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHh
Confidence             112222222 244455544432          2232        13456667766544 21 11 23445555565544


Q ss_pred             CCccchhHHhhcHHHHHHHHHHhcCC--cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638        241 EKDENIKLECLGTLEVINFIGTAASD--PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       241 ~~~~~~~ve~Lg~leav~~lg~la~~--~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~  309 (334)
                      ..+.....+     .++.+++.++..  .+....+.  .++|.+...|+.. +++++...++.+++.++..
T Consensus       618 ~~~~~~v~~-----~a~~~l~~l~~~~~~~~~~~~~--~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~  680 (876)
T 1qgr_A          618 TAGSGGVQE-----DALMAVSTLVEVLGGEFLKYME--AFKPFLGIGLKNY-AEYQVCLAAVGLVGDLCRA  680 (876)
T ss_dssp             ---CCHHHH-----HHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCccH-----HHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHcCc-chHHHHHHHHHHHHHHHHH
Confidence            321111111     245566666542  22222222  2678888888743 4556777778888888743

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=96.32  E-value=0.043  Score=51.33  Aligned_cols=158  Identities=18%  Similarity=0.077  Sum_probs=109.8

Q ss_pred             cchhHHHHHHHh-cccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHH-hcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRK-LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKII-KIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~-LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv-~~g~Ip~Lv~lL~  122 (334)
                      +.++.|+.-|+. ++.+.+--.+....|++..|++.....+...+..++++|.+|-.+.+....++ ....|..+..++.
T Consensus       133 ~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~  212 (339)
T 3dad_A          133 PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCA  212 (339)
T ss_dssp             HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHc
Confidence            445578777877 77788888999999999999999999999999999999999999988888887 5678889999997


Q ss_pred             CC--chHHHHHHHHHHccCChh-hhhHhhc--------cC--cHHHHHHHhcc--CCCCchHHHHHHHHHHH----ccCc
Q psy12638        123 EG--KHQKIILQLLYHLSIEDR-VKAMFAY--------TN--CMSLLMNMLLV--EQDDETDNVLVALCINL----ALNS  183 (334)
Q Consensus       123 ~~--~~~~~al~~L~~LS~~~~-~r~~i~~--------t~--~i~~Lv~LL~~--~~~~~~~~~~~~ll~nL----s~~~  183 (334)
                      +.  ...+.|+++|..+....+ +...+.+        .|  -.+.||.+|.+  +.+.++...++++ +|-    +-+.
T Consensus       213 s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL-IN~lL~~apd~  291 (339)
T 3dad_A          213 SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL-INKTLAALPDQ  291 (339)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH-HHHHHHHCSSH
T ss_pred             CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH-HHHHHhcCCCh
Confidence            43  346679999998866543 3322222        11  37789999962  3455555545444 332    2223


Q ss_pred             chHHHHH---hcCchHHHHHHHh
Q psy12638        184 RNAELML---KNRQLELLMIQAF  203 (334)
Q Consensus       184 ~n~~~i~---~~~gl~~Lv~~l~  203 (334)
                      +....++   +.-|+...+.+..
T Consensus       292 d~~~di~d~Le~~gi~~~i~r~l  314 (339)
T 3dad_A          292 DSFYDVTDALEQQGMEALVQRHL  314 (339)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHccHHHHHHHHH
Confidence            3344444   2356655555433

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.23  E-value=0.046  Score=56.46  Aligned_cols=253  Identities=8%  Similarity=0.031  Sum_probs=131.2

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      +.|+.|..++..++....  ..+. ..+++.+...+.+++..+++.|+.+|.+++...  +.-.... ..++|.++..++
T Consensus       343 ~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~  418 (876)
T 1qgr_A          343 NPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK  418 (876)
T ss_dssp             CHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC
Confidence            445567777777664322  1222 246666777888889999999999999999753  2222222 447899999997


Q ss_pred             CC--chHHHHHHHHHHccCChhh----hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc------------
Q psy12638        123 EG--KHQKIILQLLYHLSIEDRV----KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR------------  184 (334)
Q Consensus       123 ~~--~~~~~al~~L~~LS~~~~~----r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~------------  184 (334)
                      ++  ..|..|+.+|.+++..-..    ...+  ...++.|...+.+  ...++..+...+.++....+            
T Consensus       419 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~  494 (876)
T 1qgr_A          419 DPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAYEAADVADDQEEP  494 (876)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence            55  4688889989988764221    1111  2367778888764  25555555555556542211            


Q ss_pred             ---hHHHHHhcCchHHHHHHHhcCC--h-H---HHHHHHHHHhcCCCchhh--hhhhHHHHHHHhhcC--------Cccc
Q psy12638        185 ---NAELMLKNRQLELLMIQAFTQK--N-I---LLLKVIRNMSIHSNVKHY--FVDYIGDIANCVQKE--------KDEN  245 (334)
Q Consensus       185 ---n~~~i~~~~gl~~Lv~~l~~~~--d-~---~~~k~l~nLa~~~~~~~~--f~~~i~~L~~~l~~~--------~~~~  245 (334)
                         ...... ...++.|+..+.+..  + .   .++.++..++...+....  ....++.++..+...        +.++
T Consensus       495 ~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d  573 (876)
T 1qgr_A          495 ATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSD  573 (876)
T ss_dssp             CCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTH
T ss_pred             cchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence               000001 123344444433221  1 1   245556666555433211  223333343333210        1111


Q ss_pred             -hhHHhhcHHHHHHHHHHhcCCcc---hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638        246 -IKLECLGTLEVINFIGTAASDPI---SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       246 -~~ve~Lg~leav~~lg~la~~~~---~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~  309 (334)
                       ....-+.. .++.+++.++....   ....+  ..++|.+.++++..++...+..+++.+++.++..
T Consensus       574 ~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~  638 (876)
T 1qgr_A          574 RIQFNDLQS-LLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV  638 (876)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence             00000000 13455666665322   22111  2467888888875532235666778888888753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.03  E-value=0.036  Score=52.51  Aligned_cols=132  Identities=10%  Similarity=0.005  Sum_probs=76.0

Q ss_pred             chhHHHHHHHhcccc--hhhHHHhHhCCcchHHHhhccCC--ChhHHHHHHHHHHhhcCCh-hH-HHHHHhcCChHHHHH
Q psy12638         46 SKREGRQDSRKLSVY--HVNKEQMANLNLIEKLPRILMIE--DSNLQSSTLKLLFNLSFDT-NL-REKIIKIGFLPKLVS  119 (334)
Q Consensus        46 ~~~~A~~~L~~LSi~--~enk~~m~~~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~d~-~~-r~~iv~~g~Ip~Lv~  119 (334)
                      .|+-|+.+|..++..  ++. ..-.-..+++.+.+.+.++  +..++..|++++.++...- +. ...+...-+++.+.+
T Consensus       146 ~r~~al~~l~~l~~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  224 (462)
T 1ibr_B          146 MKESTLEAIGYICQDIDPEQ-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE  224 (462)
T ss_dssp             HHHHHHHHHHHHHHHSCGGG-TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchh-hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            455677777776542  111 0111124778888899888  7899999999999976431 11 111111124666666


Q ss_pred             hccC--CchHHHHHHHHHHccCChh--hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc
Q psy12638        120 LLEE--GKHQKIILQLLYHLSIEDR--VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA  180 (334)
Q Consensus       120 lL~~--~~~~~~al~~L~~LS~~~~--~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs  180 (334)
                      .+.+  +..+..++..|..+.....  .+..+. .+.++.++..+. ..++.+...++..+.+++
T Consensus       225 ~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~  287 (462)
T 1ibr_B          225 ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMK-SDIDEVALQGIEFWSNVC  287 (462)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHH-CSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc-CCchHHHHHHHHHHHHHH
Confidence            6653  3467778888888765321  122221 156676666665 355666665555555553

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=96.00  E-value=0.031  Score=52.98  Aligned_cols=252  Identities=10%  Similarity=0.025  Sum_probs=130.7

Q ss_pred             CCcchHHHhhccCC--ChhHHHHHHHHHHhhcCC--hhHHHHHHhcCChHHHHHhccCC----chHHHHHHHHHHccCC-
Q psy12638         70 LNLIEKLPRILMIE--DSNLQSSTLKLLFNLSFD--TNLREKIIKIGFLPKLVSLLEEG----KHQKIILQLLYHLSIE-  140 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~d--~~~r~~iv~~g~Ip~Lv~lL~~~----~~~~~al~~L~~LS~~-  140 (334)
                      .+.++.|++.+.++  +..+++.|+.+|..++.+  ++.-.... ..++|.+..+++++    ..|..|+..+.++... 
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46888899999988  899999999999999853  22111111 23677888888644    4577888888876432 


Q ss_pred             hhh-hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-chHHHHHhcCchHHHHHHHhcCChHH---HHHHHH
Q psy12638        141 DRV-KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-RNAELMLKNRQLELLMIQAFTQKNIL---LLKVIR  215 (334)
Q Consensus       141 ~~~-r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~  215 (334)
                      ++. .......-.++.+.+.+. +++..+...+...+..++... +.-......+.++.++.......+.+   ++..+.
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~  284 (462)
T 1ibr_B          206 KANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS  284 (462)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            111 000000113555555554 345566555555555553221 11000011023444444433333333   233444


Q ss_pred             HHhcCC-------------------Cchhhh----hhhHHHHHHHhhcCCc----cchhHHhhcHHHHHHHHHHhcCCcc
Q psy12638        216 NMSIHS-------------------NVKHYF----VDYIGDIANCVQKEKD----ENIKLECLGTLEVINFIGTAASDPI  268 (334)
Q Consensus       216 nLa~~~-------------------~~~~~f----~~~i~~L~~~l~~~~~----~~~~ve~Lg~leav~~lg~la~~~~  268 (334)
                      +++...                   .....+    ...++.+++.+.+.+.    ++.-+..    .++.+++.++....
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~----~a~~~L~~l~~~~~  360 (462)
T 1ibr_B          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK----AAGVCLMLLATCCE  360 (462)
T ss_dssp             HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH----HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH----HHHHHHHHHHHhcc
Confidence            444331                   011111    2344555555554321    1111110    25566676665221


Q ss_pred             hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchh--hHHHhhcCCcHHHHHHhhhcCC
Q psy12638        269 SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASC--QNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       269 ~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~--~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                       ...+  ..++|.+...++  ..+-.+...++++++.++.....  -...+  ..+...++.+|+|.+
T Consensus       361 -~~~~--~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~  421 (462)
T 1ibr_B          361 -DDIV--PHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPS  421 (462)
T ss_dssp             -TTHH--HHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSC
T ss_pred             -HHHH--HHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCC
Confidence             1111  135666666775  33456777889999999864331  11112  346668999998864

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=95.61  E-value=0.018  Score=45.72  Aligned_cols=79  Identities=16%  Similarity=0.090  Sum_probs=62.5

Q ss_pred             chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhcc
Q psy12638         73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYT  150 (334)
Q Consensus        73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t  150 (334)
                      ++.|+++|.+++..++..|+.+|.++..          .+.+|.|+++|+  ++..+..|+..|.++..          .
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~  103 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------E  103 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------H
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------H
Confidence            6999999999999999999999999873          235899999995  45678888888888763          2


Q ss_pred             CcHHHHHHHhccCCCCchHHHH
Q psy12638        151 NCMSLLMNMLLVEQDDETDNVL  172 (334)
Q Consensus       151 ~~i~~Lv~LL~~~~~~~~~~~~  172 (334)
                      ++++.|.+++. .++..+...+
T Consensus       104 ~a~~~L~~~l~-d~~~~vr~~A  124 (131)
T 1te4_A          104 RVRAAMEKLAE-TGTGFARKVA  124 (131)
T ss_dssp             HHHHHHHHHTT-SCCTHHHHHH
T ss_pred             HHHHHHHHHHh-CCCHHHHHHH
Confidence            37899999996 4566665544

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=95.30  E-value=0.0074  Score=48.09  Aligned_cols=102  Identities=8%  Similarity=-0.005  Sum_probs=66.9

Q ss_pred             CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHh
Q psy12638         70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMF  147 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i  147 (334)
                      ...++.+..+|.+++..++..|+..|.++...           .+|.|+++|+++  ..+..|+..|.++..        
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            45678899999999999999999888877531           379999999654  568888888888763        


Q ss_pred             hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHh
Q psy12638        148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAF  203 (334)
Q Consensus       148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~  203 (334)
                        .++++.|++++. .++..+...++..+.++. +         .+.++.|+..+.
T Consensus        72 --~~a~~~L~~~L~-d~~~~VR~~A~~aL~~~~-~---------~~a~~~L~~~l~  114 (131)
T 1te4_A           72 --ERAVEPLIKLLE-DDSGFVRSGAARSLEQIG-G---------ERVRAAMEKLAE  114 (131)
T ss_dssp             --HHHHHHHHHHHH-HCCTHHHHHHHHHHHHHC-S---------HHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC-c---------HHHHHHHHHHHh
Confidence              236899999996 467777776666666653 1         134666666653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=95.04  E-value=0.066  Score=58.12  Aligned_cols=220  Identities=12%  Similarity=0.131  Sum_probs=122.3

Q ss_pred             CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhh----
Q psy12638         71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVK----  144 (334)
Q Consensus        71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r----  144 (334)
                      .+++.|++.+.+++..++..|+.+|.+++..-.. ..+  ..++|.|...+.++  ..|..|...|..++..-...    
T Consensus        48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~  124 (1230)
T 1u6g_C           48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS  124 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccccc
Confidence            5678899999999999999999999999864211 111  23567788777543  45777777777765432111    


Q ss_pred             --hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc---CChHH----HHHHHH
Q psy12638        145 --AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT---QKNIL----LLKVIR  215 (334)
Q Consensus       145 --~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~---~~d~~----~~k~l~  215 (334)
                        ..-.....+|.|.+.+.+.++..+...++..+..+..+...  .+.  ..++.++..+..   ..++.    +++++.
T Consensus       125 ~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~l~--~~~~~ll~~l~~~L~~~~~~vR~~a~~al~  200 (1230)
T 1u6g_C          125 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLV--NFHPSILTCLLPQLTSPRLAVRKRTIIALG  200 (1230)
T ss_dssp             CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCT--TTHHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--HHH--HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence              00112347888999886434455555566666665421110  000  122333333322   23332    355677


Q ss_pred             HHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHHHhhh--CCchHHHHHHhccccCC
Q psy12638        216 NMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAEHFCK--NSTVDLLINLLKEMQED  292 (334)
Q Consensus       216 nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~~l~~--~g~I~~Lv~LL~~~~~d  292 (334)
                      .++...+.. .|...++.++..+...+......      .++.++|.++.. +.   .+..  ..++|.+.+.++  .++
T Consensus       201 ~l~~~~~~~-~~~~~l~~l~~~L~~~~~~~~r~------~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~--d~~  268 (1230)
T 1u6g_C          201 HLVMSCGNI-VFVDLIEHLLSELSKNDSMSTTR------TYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCN--VDD  268 (1230)
T ss_dssp             HHTTTC-----CTTHHHHHHHHHHHTCSSCSCT------THHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHS--SCC
T ss_pred             HHHHhcCHH-HHHHHHHHHHHHhccCCchhHHH------HHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhc--CCC
Confidence            777654322 25566777887776543211110      133444555431 21   2221  257888888886  345


Q ss_pred             chHHHHHHHHHHHHHcC
Q psy12638        293 DEIVLQILYVFYQICRH  309 (334)
Q Consensus       293 de~vlqi~~~l~~l~~~  309 (334)
                      +++--.++.+++.++..
T Consensus       269 ~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          269 DELREYCIQAFESFVRR  285 (1230)
T ss_dssp             TTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666677788888754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=94.70  E-value=0.15  Score=52.51  Aligned_cols=226  Identities=15%  Similarity=0.128  Sum_probs=120.7

Q ss_pred             CcchHHHhhccCCCh-hHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhh
Q psy12638         71 NLIEKLPRILMIEDS-NLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKA  145 (334)
Q Consensus        71 g~I~~Lv~LL~~~~~-~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~  145 (334)
                      .+++.+.+++.+.+. .+++.++.++.+++...  +...-+  ..++|.+...++  ++..+..++.++..++..-.  .
T Consensus       597 ~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~--~  672 (861)
T 2bpt_A          597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE--E  672 (861)
T ss_dssp             HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG--G
T ss_pred             HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc--h
Confidence            355667777887777 88999999999988542  233222  237888888885  44567778888877764321  1


Q ss_pred             Hhhc--cCcHHHHHHHhccCC-CCchHHHHHHHHHHHccCc-chHHHHHhcCchHHHHHHHhcCC----hH---------
Q psy12638        146 MFAY--TNCMSLLMNMLLVEQ-DDETDNVLVALCINLALNS-RNAELMLKNRQLELLMIQAFTQK----NI---------  208 (334)
Q Consensus       146 ~i~~--t~~i~~Lv~LL~~~~-~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~gl~~Lv~~l~~~~----d~---------  208 (334)
                      .|..  .+.++.+++.+.+.. +.++...++..+..++... +.-..... ..+++++..+....    +.         
T Consensus       673 ~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~d~d~~~~~~~vr  751 (861)
T 2bpt_A          673 DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN-DIMALCVAAQNTKPENGTLEALDYQIKVL  751 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCCCSSSSHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence            2211  346777778886532 2556555555554443321 12222222 24555555543221    11         


Q ss_pred             -HHHHHHHHHhcCCC-chhhhhhhHHHHHHHhhcC--Cc----cchhHHhhcHHHHHHHHHHhcC---CcchHHHhhhCC
Q psy12638        209 -LLLKVIRNMSIHSN-VKHYFVDYIGDIANCVQKE--KD----ENIKLECLGTLEVINFIGTAAS---DPISAEHFCKNS  277 (334)
Q Consensus       209 -~~~k~l~nLa~~~~-~~~~f~~~i~~L~~~l~~~--~~----~~~~ve~Lg~leav~~lg~la~---~~~~~~~l~~~g  277 (334)
                       ..++++..++..-. ....|.++++.++..+...  +.    .+.+..     .|+.++|.++.   .++.. .+....
T Consensus       752 ~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~-----~a~~~l~~l~~~~~g~~~~-~~~~~~  825 (861)
T 2bpt_A          752 EAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSR-----AAVGLIGDIAAMFPDGSIK-QFYGQD  825 (861)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHH-----HHHHHHHHHHHHCTTSTTG-GGTTCH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHH-----HHHHHHHHHHHHcCCchHH-HHHhcH
Confidence             12334444432211 1233666777766655322  10    111111     25566677765   22322 333335


Q ss_pred             chHHHHHHhccccCC-chHHHHHHHHHHHHH
Q psy12638        278 TVDLLINLLKEMQED-DEIVLQILYVFYQIC  307 (334)
Q Consensus       278 ~I~~Lv~LL~~~~~d-de~vlqi~~~l~~l~  307 (334)
                      ++|.|++.++..++. +...-.+.++.+.+.
T Consensus       826 ~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~  856 (861)
T 2bpt_A          826 WVIDYIKRTRSGQLFSQATKDTARWAREQQK  856 (861)
T ss_dssp             HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence            788888888853343 445555677777664

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=94.66  E-value=0.35  Score=45.68  Aligned_cols=206  Identities=10%  Similarity=0.058  Sum_probs=82.1

Q ss_pred             chHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhcc
Q psy12638         73 IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYT  150 (334)
Q Consensus        73 I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t  150 (334)
                      +..+.+=+.++++-++-.|+++|+++.... .-+     .+.+.+.+.|.  +|-.+..|+-..++|..+..  +.+ + 
T Consensus       106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v-~-  175 (355)
T 3tjz_B          106 TSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVV-K-  175 (355)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHH-H-
T ss_pred             HHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHH-H-
Confidence            344555556666666666666666665422 211     12344445553  34455555555666644321  111 1 


Q ss_pred             CcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCC--hHHH-HHHHHHHhcCCCch-hh
Q psy12638        151 NCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQK--NILL-LKVIRNMSIHSNVK-HY  226 (334)
Q Consensus       151 ~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~--d~~~-~k~l~nLa~~~~~~-~~  226 (334)
                      +.++.+-+++. +.++.+.-.++++++.+...++  .      .+..|+..+.++.  +|+. ..++|-++..-+.. ..
T Consensus       176 ~~~~~l~~ll~-d~n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~  246 (355)
T 3tjz_B          176 RWVNEAQEAAS-SDNIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS  246 (355)
T ss_dssp             TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------
T ss_pred             HHHHHHHHHhc-CCCccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh
Confidence            34556666664 2444444445555555543221  1      2223333333321  3442 33444333221111 00


Q ss_pred             -hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638        227 -FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ  305 (334)
Q Consensus       227 -f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~  305 (334)
                       -.+++..+...+ ++.+...+.|      |+.++-.+...+.  ..+  ..++..|..+|.  +.|.++..-++..+..
T Consensus       247 ~~~~~~~~l~~~L-~~~~~aVvyE------a~k~I~~l~~~~~--~~~--~~a~~~L~~fLs--s~d~niryvaLr~L~~  313 (355)
T 3tjz_B          247 RDSPLFDFIESCL-RNKHEMVVYE------AASAIVNLPGCSA--KEL--APAVSVLQLFCS--SPKAALRYAAVRTLNK  313 (355)
T ss_dssp             ----------CCC-CCSSHHHHHH------HHHHHTC---------------CCCTHHHHHH--SSSSSSHHHHHHCC--
T ss_pred             hHHHHHHHHHHHH-cCCChHHHHH------HHHHHHhccCCCH--HHH--HHHHHHHHHHHc--CCCchHHHHHHHHHHH
Confidence             001111111111 2222233333      3444433333111  222  224677888886  4556787777777777


Q ss_pred             HHcCc
Q psy12638        306 ICRHA  310 (334)
Q Consensus       306 l~~~~  310 (334)
                      ++...
T Consensus       314 l~~~~  318 (355)
T 3tjz_B          314 VAMKH  318 (355)
T ss_dssp             -----
T ss_pred             HHHHC
Confidence            76433

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=93.00  E-value=4.2  Score=43.91  Aligned_cols=171  Identities=8%  Similarity=-0.012  Sum_probs=89.3

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-----------------hHHHH
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-----------------NLREK  107 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-----------------~~r~~  107 (334)
                      +.|+.|...+..++........-.-..++|.+++.+...++.++..++.+|..+....                 .....
T Consensus       348 ~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (1230)
T 1u6g_C          348 KVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM  427 (1230)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHH
Confidence            3467777777777642211112222456788888888888999999998877665310                 00111


Q ss_pred             HH--hcCChHHHHHhccCCc--hHHHHHHHHHHccCChhhhhHhhc--cCcHHHHHHHhccCCC-CchHHHHHHHHHHHc
Q psy12638        108 II--KIGFLPKLVSLLEEGK--HQKIILQLLYHLSIEDRVKAMFAY--TNCMSLLMNMLLVEQD-DETDNVLVALCINLA  180 (334)
Q Consensus       108 iv--~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~~~~r~~i~~--t~~i~~Lv~LL~~~~~-~~~~~~~~~ll~nLs  180 (334)
                      +.  -..++|.+.+.++++.  .+..++..|..+...  ....+..  ...+|.+.+.|..... ..+..+++..+..+.
T Consensus       428 ~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~--~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~  505 (1230)
T 1u6g_C          428 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV--LPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL  505 (1230)
T ss_dssp             HHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--STTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--chhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence            11  1223444445576543  566677777777543  1121211  2357778888864221 245555555555542


Q ss_pred             --cCcchHHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHh
Q psy12638        181 --LNSRNAELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMS  218 (334)
Q Consensus       181 --~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa  218 (334)
                        ..++.-..... .-++.++..+.+.+..+   ++.++..++
T Consensus       506 ~~~~~~~~~~~l~-~llp~L~~~l~d~~~~v~~~al~~l~~l~  547 (1230)
T 1u6g_C          506 CNHSPQVFHPHVQ-ALVPPVVACVGDPFYKITSEALLVTQQLV  547 (1230)
T ss_dssp             HSSCGGGGHHHHT-TTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHhHHH-HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence              23332222332 46777776655443322   344444444

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=92.95  E-value=1.1  Score=40.23  Aligned_cols=143  Identities=12%  Similarity=0.100  Sum_probs=113.4

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCC-----hhHHHHHHHHHHhhcC--ChhHHHHHHhcCChHHHHHhc
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIED-----SNLQSSTLKLLFNLSF--DTNLREKIIKIGFLPKLVSLL  121 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~-----~~l~~~al~~L~NLS~--d~~~r~~iv~~g~Ip~Lv~lL  121 (334)
                      .|+..|+-.+.+++.|....++.+.-.|..+|...+     +-++-.+++.++-|..  |+++-.-+.+.++||...+.+
T Consensus        75 naLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim  154 (268)
T 2fv2_A           75 NALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM  154 (268)
T ss_dssp             HHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence            677788888889999999999999999999986654     3578888888888885  468888888999999999999


Q ss_pred             --cCCchHHHHHHHHHHccCChhhhhHhhccC--------cHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHh
Q psy12638        122 --EEGKHQKIILQLLYHLSIEDRVKAMFAYTN--------CMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLK  191 (334)
Q Consensus       122 --~~~~~~~~al~~L~~LS~~~~~r~~i~~t~--------~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~  191 (334)
                        +++-.+-.|..++..+=.||.+..-+..|.        .+..+|.-+...+...+-+..+..-.-|+.+++.++++..
T Consensus       155 e~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~  234 (268)
T 2fv2_A          155 ESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ  234 (268)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence              455668889999999988888887776653        3444555555556667666666666688999999888875

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=92.24  E-value=0.4  Score=43.12  Aligned_cols=144  Identities=13%  Similarity=0.146  Sum_probs=98.2

Q ss_pred             cCcchhHHHHHHHhcccchhhHHHh-----HhCCcchHHHh-------hccC-----CChhHHHHHHHHHHhhcCChhHH
Q psy12638         43 VPKSKREGRQDSRKLSVYHVNKEQM-----ANLNLIEKLPR-------ILMI-----EDSNLQSSTLKLLFNLSFDTNLR  105 (334)
Q Consensus        43 ~~~~~~~A~~~L~~LSi~~enk~~m-----~~~g~I~~Lv~-------LL~~-----~~~~l~~~al~~L~NLS~d~~~r  105 (334)
                      .|+.|++|+.-|.|   ..|+-..+     .+-|.+..|++       .+..     ....-.++|+.+|--++.|++.|
T Consensus        14 ~p~~Re~AL~eLsk---~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr   90 (268)
T 2fv2_A           14 SPETRENALLELSK---KRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETR   90 (268)
T ss_dssp             STTTHHHHHHHHHH---HTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred             CchhHHHHHHHHHH---hhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchh
Confidence            56778888777765   33322222     23577776644       3322     23356899999999999999999


Q ss_pred             HHHHhcCChHHHHHhccCC-------chHHHHHHHHHHccCC--hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHH-H
Q psy12638        106 EKIIKIGFLPKLVSLLEEG-------KHQKIILQLLYHLSIE--DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVA-L  175 (334)
Q Consensus       106 ~~iv~~g~Ip~Lv~lL~~~-------~~~~~al~~L~~LS~~--~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~-l  175 (334)
                      ..+.++++.--|-++|+..       -.|-.++++...|...  .+.-.-+-+|+.||...+.+..|  ++..|.++. +
T Consensus        91 ~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G--selSKtvAtfI  168 (268)
T 2fv2_A           91 SAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG--SELSKTVATFI  168 (268)
T ss_dssp             HHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHH
T ss_pred             hHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc--cHHHHHHHHHH
Confidence            9999999988999999522       1356688888888654  33334444589999999999874  455565543 3


Q ss_pred             HHHHccCcchHHHHHh
Q psy12638        176 CINLALNSRNAELMLK  191 (334)
Q Consensus       176 l~nLs~~~~n~~~i~~  191 (334)
                      +..+-.|+..-.-+++
T Consensus       169 lqKIL~dd~GL~YiC~  184 (268)
T 2fv2_A          169 LQKILLDDTGLAYICQ  184 (268)
T ss_dssp             HHHHHHSHHHHHHHTS
T ss_pred             HHHHhccchhHHHHHc
Confidence            4466667776666664

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=91.36  E-value=0.48  Score=41.23  Aligned_cols=121  Identities=10%  Similarity=-0.009  Sum_probs=77.7

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCch
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKH  126 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~  126 (334)
                      .|...+..++........-.-..++|.+++.+.+++..++..|..+|.++.......      .++|.+...++  ++..
T Consensus        76 ~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~~~~~v  149 (242)
T 2qk2_A           76 MAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE------AQQESIVESLSNKNPSV  149 (242)
T ss_dssp             HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcCCChHH
Confidence            555566555532111111122347888999999999999999999999998754322      35778888885  4567


Q ss_pred             HHHHHHHHHHc-cCCh-h--hhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHH
Q psy12638        127 QKIILQLLYHL-SIED-R--VKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN  178 (334)
Q Consensus       127 ~~~al~~L~~L-S~~~-~--~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~n  178 (334)
                      +..++.+|..+ +... +  ....+  ...+|.|+.++. .+..+++..+...+..
T Consensus       150 r~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~-D~~~~VR~~A~~~l~~  202 (242)
T 2qk2_A          150 KSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLN-EPDPTVRDSSAEALGT  202 (242)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhc-CCChHHHHHHHHHHHH
Confidence            88899999885 4432 1  12222  347888999985 4566666655444443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=90.03  E-value=0.28  Score=42.75  Aligned_cols=125  Identities=10%  Similarity=0.056  Sum_probs=81.0

Q ss_pred             cchhHHHHHHHhcccc-hhhHHHhHhCCcchHHHhhcc-CCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHh
Q psy12638         45 KSKREGRQDSRKLSVY-HVNKEQMANLNLIEKLPRILM-IEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSL  120 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~-~enk~~m~~~g~I~~Lv~LL~-~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~l  120 (334)
                      +.|+.|+..|..+... ++....- -..+++.|.+++. ..+..++..|+.+|.-|+..-  ....  .-..++|.+.+.
T Consensus        30 ~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~--~~~~ilp~ll~~  106 (242)
T 2qk2_A           30 TLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN--YASACVPSLLEK  106 (242)
T ss_dssp             HHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHH
Confidence            3455666666665432 1100000 0245677888884 889999999999999999542  2222  224478999999


Q ss_pred             ccCC--chHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638        121 LEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL  179 (334)
Q Consensus       121 L~~~--~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL  179 (334)
                      ++++  ..+..|..+|..+......      ...+|.+...+.+ .+..++.+++..+..+
T Consensus       107 l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~  160 (242)
T 2qk2_A          107 FKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSN-KNPSVKSETALFIARA  160 (242)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcC-CChHHHHHHHHHHHHH
Confidence            9765  4678888888888654321      2367888888875 5667777777766664

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=89.88  E-value=5.6  Score=35.43  Aligned_cols=179  Identities=16%  Similarity=0.111  Sum_probs=111.2

Q ss_pred             cccccccccchhhhcccCCcceeecccCc----chhHHHHHHHhcccch-hhHHHhHhCCcchHHHhhccCCChhHHHHH
Q psy12638         17 DTYPTRNAGVKAQRFDRGNCNCYGLIVPK----SKREGRQDSRKLSVYH-VNKEQMANLNLIEKLPRILMIEDSNLQSST   91 (334)
Q Consensus        17 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~~~~A~~~L~~LSi~~-enk~~m~~~g~I~~Lv~LL~~~~~~l~~~a   91 (334)
                      -.|-++.+.=.+| ...+-+..+..+...    -|..|+..|+++=... .-...+.=....+.+++++.++|+.+--.|
T Consensus        17 ~sWkiK~a~ela~-~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A   95 (265)
T 3b2a_A           17 LSWQILDAVSLAL-EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKA   95 (265)
T ss_dssp             HTTCHHHHHHHHH-HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred             HHhhHHHHHHHHH-hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            4576666654555 223334444444432    2446777776653321 112222234678889999999999999999


Q ss_pred             HHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCCCch
Q psy12638         92 LKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDET  168 (334)
Q Consensus        92 l~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~  168 (334)
                      +++|.-|-.+ |=......+  ++..|+.++.  ++-.+..++-.|..|..-...+.      .+..+.+++ .+.+.++
T Consensus        96 ~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl-~Skd~~v  166 (265)
T 3b2a_A           96 LRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL------VRTYINELV-VSPDLYT  166 (265)
T ss_dssp             HHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHH-TCSSHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHH------HHHHHHHHH-hCCChhH
Confidence            9999998876 333333332  3456777775  44568889998988855443333      345688888 5678888


Q ss_pred             HHHHHHHHHHHcc---CcchHHHHHhcCchHHHHHHHhcCChHHHH
Q psy12638        169 DNVLVALCINLAL---NSRNAELMLKNRQLELLMIQAFTQKNILLL  211 (334)
Q Consensus       169 ~~~~~~ll~nLs~---~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~  211 (334)
                      +...++++.|.+.   |++....+.+  +++.    +++..|+.+.
T Consensus       167 K~agl~~L~eia~~S~D~~i~~~I~~--eI~e----lL~~eD~~l~  206 (265)
T 3b2a_A          167 KVAGFCLFLNMLNSSADSGHLTLILD--EIPS----LLQNDNEFIV  206 (265)
T ss_dssp             HHHHHHHHHHHGGGCSSCCCGGGTTT--THHH----HHTCSCHHHH
T ss_pred             HHHHHHHHHHhhcccCCHHHHHHHHH--HHHH----HHcCCCHHHH
Confidence            7777778888854   5566666654  3333    3455566543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=89.76  E-value=0.89  Score=42.84  Aligned_cols=170  Identities=9%  Similarity=0.077  Sum_probs=89.3

Q ss_pred             HHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC--Cc
Q psy12638         49 EGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE--GK  125 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~--~~  125 (334)
                      -|+++|.++....     |. ..+.+++-+.+.++++-++..|+-+.+.|..+ ++    +++ ++++.+-+++.+  +.
T Consensus       123 lALRtL~~I~~~~-----m~-~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~-~~~~~l~~ll~d~n~~  191 (355)
T 3tjz_B          123 PAVRALCQITDST-----ML-QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VVK-RWVNEAQEAASSDNIM  191 (355)
T ss_dssp             HHHHHHHHHCCTT-----TH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HHH-TTHHHHHHHTTCSSHH
T ss_pred             HHHHHHhcCCCHH-----HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HHH-HHHHHHHHHhcCCCcc
Confidence            6777777664321     11 13555677788899999999999999999865 34    343 699999999954  45


Q ss_pred             hHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhccCCC-CchHH-HHHHHHHHHccC--cchHHHHHhcCchHHHHHH
Q psy12638        126 HQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQD-DETDN-VLVALCINLALN--SRNAELMLKNRQLELLMIQ  201 (334)
Q Consensus       126 ~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~~~~~-~~~~~-~~~~ll~nLs~~--~~n~~~i~~~~gl~~Lv~~  201 (334)
                      .+..|+++|+++...+.  .      ++.+|+.-+..+.- .+... ..+..+..+...  ++....     -++.+...
T Consensus       192 V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~-----~~~~l~~~  258 (355)
T 3tjz_B          192 VQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSP-----LFDFIESC  258 (355)
T ss_dssp             HHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CC
T ss_pred             HHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHH-----HHHHHHHH
Confidence            67889999999987552  1      45566666654321 22211 122222122111  122222     22333334


Q ss_pred             HhcCChHHHHHHHHHHhcCCCc-hhhhhhhHHHHHHHhhcCC
Q psy12638        202 AFTQKNILLLKVIRNMSIHSNV-KHYFVDYIGDIANCVQKEK  242 (334)
Q Consensus       202 l~~~~d~~~~k~l~nLa~~~~~-~~~f~~~i~~L~~~l~~~~  242 (334)
                      +.+.++.+++.+++.+..-... ...+..++..|..++++.+
T Consensus       259 L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d  300 (355)
T 3tjz_B          259 LRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPK  300 (355)
T ss_dssp             CCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSS
T ss_pred             HcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCC
Confidence            4455677777777766554332 1223344444545555444

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=89.52  E-value=3.7  Score=36.58  Aligned_cols=141  Identities=11%  Similarity=0.130  Sum_probs=91.0

Q ss_pred             cHHHHHHHhccCCCCchHHHHHHHHHHHccC--cchHHHHHhcCchHHHHHHHhcCChHHH---HHHHHHHhcCCC-chh
Q psy12638        152 CMSLLMNMLLVEQDDETDNVLVALCINLALN--SRNAELMLKNRQLELLMIQAFTQKNILL---LKVIRNMSIHSN-VKH  225 (334)
Q Consensus       152 ~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~--~~n~~~i~~~~gl~~Lv~~l~~~~d~~~---~k~l~nLa~~~~-~~~  225 (334)
                      .+..|..+|. ..++.++..++.++-.+-..  ..-+..+.+ ..++.++..+.+.++.+.   ++|++.+=.+.+ +.+
T Consensus        34 ~l~~L~~LL~-dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           34 ALFLILELAG-EDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            5566788885 45666666666666565322  333444444 489999988877777775   556776666655 455


Q ss_pred             hhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHH
Q psy12638        226 YFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQ  305 (334)
Q Consensus       226 ~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~  305 (334)
                      .|...+..|.++++++.  +.+.+     +++..+|.+.--....      +++.++.+|+  ++.|.++....+.+|-.
T Consensus       112 ~y~Kl~~aL~dlik~~~--~il~~-----eaae~Lgklkv~~~~~------~V~~~l~sLl--~Skd~~vK~agl~~L~e  176 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPD--DMMRI-----ETIDVLSKLQPLEDSK------LVRTYINELV--VSPDLYTKVAGFCLFLN  176 (265)
T ss_dssp             HHHHHHHHHHHHTTSCC--HHHHH-----HHHHHHHHCCBSCCCH------HHHHHHHHHH--TCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCC--chHHH-----HHHHHhCcCCcccchH------HHHHHHHHHH--hCCChhHHHHHHHHHHH
Confidence            58888888888887443  33333     4777778882211111      2678888888  45666777777888888


Q ss_pred             HHcC
Q psy12638        306 ICRH  309 (334)
Q Consensus       306 l~~~  309 (334)
                      ++..
T Consensus       177 ia~~  180 (265)
T 3b2a_A          177 MLNS  180 (265)
T ss_dssp             HGGG
T ss_pred             hhcc
Confidence            8743

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=87.67  E-value=6.3  Score=36.13  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             CChhHHHHHHHHHHhhcCChhHHHHHHhc--CChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhh-ccCcHHHHH
Q psy12638         83 EDSNLQSSTLKLLFNLSFDTNLREKIIKI--GFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFA-YTNCMSLLM  157 (334)
Q Consensus        83 ~~~~l~~~al~~L~NLS~d~~~r~~iv~~--g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~-~t~~i~~Lv  157 (334)
                      ..+.-+-.++++++|+-.++..|..|.+.  .+++.+..++.  +...+-.++.+++|+|...-....+. ...++..+.
T Consensus       160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~  239 (304)
T 3ebb_A          160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS  239 (304)
T ss_dssp             SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence            34556889999999999999998888752  34444554443  33467778899999998531111111 111444555


Q ss_pred             HHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc
Q psy12638        158 NMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT  204 (334)
Q Consensus       158 ~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~  204 (334)
                      .++....+.+..-..+..+-||...+.....+++.=++...++.+.+
T Consensus       240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~  286 (304)
T 3ebb_A          240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS  286 (304)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence            66654334443333444445776655556666655455555444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=85.20  E-value=35  Score=36.17  Aligned_cols=11  Identities=0%  Similarity=-0.061  Sum_probs=5.9

Q ss_pred             cHHHHHHHhcc
Q psy12638        152 CMSLLMNMLLV  162 (334)
Q Consensus       152 ~i~~Lv~LL~~  162 (334)
                      ++..|+..+.+
T Consensus       508 ai~~LL~~~~e  518 (963)
T 4ady_A          508 AIHDMFTYSQE  518 (963)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            45556665544

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=84.19  E-value=5.4  Score=36.54  Aligned_cols=107  Identities=13%  Similarity=0.066  Sum_probs=66.9

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhC--CcchHHHhhccCCChhHHHHHHHHHHhhcCCh------hHHHHHHhcCChHHHH
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANL--NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT------NLREKIIKIGFLPKLV  118 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~--g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~------~~r~~iv~~g~Ip~Lv  118 (334)
                      +--+++++.|+=..+..+..|.+.  .+++.+...+.++++.++-.+..+++|+|...      +.+.+     +...+.
T Consensus       165 ~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~  239 (304)
T 3ebb_A          165 QLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLIS  239 (304)
T ss_dssp             HHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHH
T ss_pred             HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHH
Confidence            336788888887777777777653  45666667777789999999999999999732      11111     233333


Q ss_pred             Hhc---cCCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHH
Q psy12638        119 SLL---EEGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMN  158 (334)
Q Consensus       119 ~lL---~~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~  158 (334)
                      .++   ++++....++..|.+|...+.....+++.=++...++
T Consensus       240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~  282 (304)
T 3ebb_A          240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIK  282 (304)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGG
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHH
Confidence            444   3555666677777777654444444444433443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-05
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	0.002
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-04

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 17/68 (25%), Positives = 25/68 (36%)

Query: 57  LSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPK 116
           L+    N+  +  LN I    ++L     N+Q     +L  L+ D    E I   G    
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 505

Query: 117 LVSLLEEG 124
           L  LL   
Sbjct: 506 LTELLHSR 513

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 4/128 (3%)

Query: 73  IEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIK-IGFLPKLVSLLEEGKH---QK 128
           I +L ++L  ED  + +    ++  LS     R  I++    +  +V  ++        +
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 129 IILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAEL 188
                L++LS           +  +  L+ ML    D      +  L   L         
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 189 MLKNRQLE 196
           +     L+
Sbjct: 139 VRLAGGLQ 146

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 82  IEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGKH--QKIILQLLYHLSI 139
           +    +       L  L+ D + R  I  +  +P  V LL       Q++   +L  L+ 
Sbjct: 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489

Query: 140 EDRVKAMFAYTNCMSLLMNML 160
           +             + L  +L
Sbjct: 490 DKEAAEAIEAEGATAPLTELL 510

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 40/247 (16%), Positives = 83/247 (33%), Gaps = 4/247 (1%)

Query: 63  NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLL 121
            K+Q+  L  I KL  +L   + N+Q +    L NL F  T  + +  +   + + VSLL
Sbjct: 36  AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLL 95

Query: 122 EEGKH---QKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCIN 178
               +   QK +  LL++LS  D +K          L   +++        N  ++  + 
Sbjct: 96  RRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155

Query: 179 LALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVKHYFVDYIGDIANCV 238
                 NA   L+N        Q     + L+  ++  +             + +    +
Sbjct: 156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL 215

Query: 239 QKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQ 298
                           ++      A ++  S   F   S   +  N    + E++     
Sbjct: 216 HNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275

Query: 299 ILYVFYQ 305
             ++++ 
Sbjct: 276 SGWLYHS 282

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 4/131 (3%)

Query: 73  IEKLPRILMIEDSNLQSSTLKLLFNLSFDTN-LREKIIKIGFLPKLVSLLEEGKH--QKI 129
           I K  + L  +D   Q+     + +  F     ++++ ++G + KLV LL       Q+ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 130 ILQLLYHLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAEL 188
               L +L       K      N +   +++L    + E    L  L  NL+      E 
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 189 MLKNRQLELLM 199
           ++ +    L  
Sbjct: 124 LIADALPVLAD 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.82
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.78
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.77
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.77
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.64
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.64
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.06
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.45
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.24
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.15
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.06
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.86
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.8
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.38
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.35
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	95.94
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.87
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	94.81
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	93.64
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	93.46
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	93.42
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.54
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	87.9
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	87.9

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-24  Score=210.80  Aligned_cols=163  Identities=16%  Similarity=0.099  Sum_probs=144.3

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccC
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEE  123 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~  123 (334)
                      ..++.|+..|.+++..++++..+.+.|++|+|+++|.+++++++..|+.+|+||+.+. ..|..+.+.|+||+|+++|++
T Consensus        75 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~  154 (529)
T d1jdha_          75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  154 (529)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc
Confidence            4577899999999999999999999999999999999999999999999999999875 577888899999999999964


Q ss_pred             --CchHHHHHHHHHHccC-ChhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHH
Q psy12638        124 --GKHQKIILQLLYHLSI-EDRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMI  200 (334)
Q Consensus       124 --~~~~~~al~~L~~LS~-~~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~  200 (334)
                        +..+..++..|.+++. +++.+..+...|++++|+.++.+.+.+.+...+..++.|++.+++++..+.+.|++++|+.
T Consensus       155 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~  234 (529)
T d1jdha_         155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL  234 (529)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHT
T ss_pred             cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHH
Confidence              4578889999999986 4678899999999999999998766667766777888999999999999999999999988


Q ss_pred             HHhcCCh
Q psy12638        201 QAFTQKN  207 (334)
Q Consensus       201 ~l~~~~d  207 (334)
                      .+.+.+.
T Consensus       235 ll~~~~~  241 (529)
T d1jdha_         235 HLTDPSQ  241 (529)
T ss_dssp             TTTSSCH
T ss_pred             Hhcccch
Confidence            7655443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-21  Score=192.30  Aligned_cols=286  Identities=15%  Similarity=0.153  Sum_probs=222.9

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhC-CcchHHHhhccC-CChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANL-NLIEKLPRILMI-EDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~-g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      .-|.+|+.++.+++....++..+... |+++.|+++|.+ ++.++++.|+.+|.+|+.+++++..|++.|+||+|+++|+
T Consensus        32 ~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~  111 (529)
T d1jdha_          32 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG  111 (529)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhC
Confidence            34679999999999888877777664 789999999965 5678999999999999999999999999999999999996


Q ss_pred             --CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHcc-CcchHHHHHhcCchHHH
Q psy12638        123 --EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLAL-NSRNAELMLKNRQLELL  198 (334)
Q Consensus       123 --~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~-~~~n~~~i~~~~gl~~L  198 (334)
                        +++.+..|+.+|++|+.+ +..|..|.+.|+||+|+++|.+ ++.+++..+...+.+++. ++.++..+.+.||+++|
T Consensus       112 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L  190 (529)
T d1jdha_         112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL  190 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc-cChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHH
Confidence              446799999999999887 4578889999999999999975 566776666677888875 45667888899999999


Q ss_pred             HHHHhcCChH-H---HHHHHHHHhcCCCchhhh--hhhHHHHHHHhhcCCccchhHHhhcHH------------------
Q psy12638        199 MIQAFTQKNI-L---LLKVIRNMSIHSNVKHYF--VDYIGDIANCVQKEKDENIKLECLGTL------------------  254 (334)
Q Consensus       199 v~~l~~~~d~-~---~~k~l~nLa~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~ve~Lg~l------------------  254 (334)
                      +..+...+++ .   ...++.|++.++.+++.|  .+++..|.+.+...+ .+....+++.+                  
T Consensus       191 ~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~l~~ls~~~~~~~~~~~~i~  269 (529)
T d1jdha_         191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQEGMEGLLG  269 (529)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTTCSCCHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccc-hhhhhhhhhHHHhccccccchhhhhhcch
Confidence            9999776644 2   366799999988877664  467777776654322 22222222221                  


Q ss_pred             ---------------HHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch----hhH
Q psy12638        255 ---------------EVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS----CQN  314 (334)
Q Consensus       255 ---------------eav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~----~~~  314 (334)
                                     .++.+++.++. +++.+..+.+.|+++.|+.++....+.+++.-.++.++..++...+    .+.
T Consensus       270 ~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  349 (529)
T d1jdha_         270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN  349 (529)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred             hhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhh
Confidence                           46778899886 5667778899999999999998666667787788999999985554    333


Q ss_pred             HHhhcCCcHHHHHHhhhcC
Q psy12638        315 YLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       315 ~i~~~~~i~~~Li~LL~d~  333 (334)
                      .+... +....|++++++.
T Consensus       350 ~i~~~-~~l~~L~~ll~~~  367 (529)
T d1jdha_         350 AVRLH-YGLPVVVKLLHPP  367 (529)
T ss_dssp             HHHHT-TCHHHHHHTTSTT
T ss_pred             hHHhc-ccchhHHHHHhcc
Confidence            34444 4444899998754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.6e-19  Score=167.61  Aligned_cols=281  Identities=14%  Similarity=0.142  Sum_probs=208.1

Q ss_pred             cchhHHHHHHHhcccchhh--HHHhHhCCcchHHHhhccC-CChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHh
Q psy12638         45 KSKREGRQDSRKLSVYHVN--KEQMANLNLIEKLPRILMI-EDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSL  120 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~en--k~~m~~~g~I~~Lv~LL~~-~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~l  120 (334)
                      ..+..|+..++++.....|  ...+.+.|++|+|+++|.+ ++++++..|+.+|.|+|.+ ++.+..+++.|++|.++.+
T Consensus        28 ~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~  107 (434)
T d1q1sc_          28 ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL  107 (434)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhc
Confidence            4455789999988655555  4789999999999999965 4578999999999999875 6899999999999999999


Q ss_pred             ccCC--chHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchH----HHHHHHHHHHccCcch-HHHHHhc
Q psy12638        121 LEEG--KHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETD----NVLVALCINLALNSRN-AELMLKN  192 (334)
Q Consensus       121 L~~~--~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~----~~~~~ll~nLs~~~~n-~~~i~~~  192 (334)
                      |+++  ..++.|+.+|.+++.+ ++.|..+.+.|+++.|+.++.........    ......+.|++.+... .......
T Consensus       108 L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  187 (434)
T d1q1sc_         108 LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE  187 (434)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhh
Confidence            9654  5789999999999876 57889999999999999999764433221    1223345677665443 3333445


Q ss_pred             CchHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh---hhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-
Q psy12638        193 RQLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY---FVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-  265 (334)
Q Consensus       193 ~gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~---f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-  265 (334)
                      +.++.++.++.++++..   ++.++++++.++.....   ..++++.++.++...+ .+....      ++.+++.++. 
T Consensus       188 ~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~-~~~~~~------al~~l~~l~~~  260 (434)
T d1q1sc_         188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE-LPIVTP------ALRAIGNIVTG  260 (434)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC-HHHHHH------HHHHHHHHTTS
T ss_pred             hHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccch-hhhhhc------hhhhhhhHHhh
Confidence            67888887766555543   35578899888654433   2578888888875443 233222      4566788887 


Q ss_pred             CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        266 DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       266 ~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ++.....+.+.|+++.|+.+++  ..++++...++.++..++.+.......+.+.++...+++++.+.+
T Consensus       261 ~~~~~~~~~~~~~~~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~  327 (434)
T d1q1sc_         261 TDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  327 (434)
T ss_dssp             CHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC
T ss_pred             hhHHHHHHHhccccchHHHhhc--ccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccC
Confidence            4556778889999999999997  456788899999999999877644444444556669999998754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.7e-19  Score=165.58  Aligned_cols=257  Identities=17%  Similarity=0.164  Sum_probs=190.9

Q ss_pred             CcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccC-ChhhhhH
Q psy12638         71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSI-EDRVKAM  146 (334)
Q Consensus        71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~-~~~~r~~  146 (334)
                      +.||.|+++|.+++++++..|+++|.||+++ +++|..+.+.|+||+|+++|+  +++.+..|+.+|.+|+. ++++|..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5789999999999999999999999999985 699999999999999999996  45689999999999995 5789999


Q ss_pred             hhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhc---------------CChHH--
Q psy12638        147 FAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFT---------------QKNIL--  209 (334)
Q Consensus       147 i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~---------------~~d~~--  209 (334)
                      +.+.|+++.|+.++.+..+..++..+..++.|++.++.+...+.+. |+++++..+..               ..++.  
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            9999999999999987667777777778899999998888877774 67777766542               11221  


Q ss_pred             --HHHHHHHHhcCCCchhhh---hhhHHHHHHHhhcCC----cc-c----------------------------------
Q psy12638        210 --LLKVIRNMSIHSNVKHYF---VDYIGDIANCVQKEK----DE-N----------------------------------  245 (334)
Q Consensus       210 --~~k~l~nLa~~~~~~~~f---~~~i~~L~~~l~~~~----~~-~----------------------------------  245 (334)
                        +..++++++.++.+++.+   .+.++.++.++....    .. .                                  
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence              355677888776665441   345555555442110    00 0                                  


Q ss_pred             ----hhHHhhcH-----------------------------------H--------------HHHHHHHHhcCCcc----
Q psy12638        246 ----IKLECLGT-----------------------------------L--------------EVINFIGTAASDPI----  268 (334)
Q Consensus       246 ----~~ve~Lg~-----------------------------------l--------------eav~~lg~la~~~~----  268 (334)
                          ....+++.                                   +              .++.+++.++....    
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                00000000                                   0              24455666665322    


Q ss_pred             --hHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhc
Q psy12638        269 --SAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHASCQNYLIKETDAPAYMIDLLND  332 (334)
Q Consensus       269 --~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d  332 (334)
                        .+..+.+.|++|.|+++++  .+++++..+++.++..++.++..++.+.. .+++ .|+++|.+
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~-~li~~L~~  382 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFP-EVTRLLTS  382 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHH-HHHHTTTS
T ss_pred             HHHHHHHHHcCChHHHHhhhc--CccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHH-HHHHHHhc
Confidence              3456778899999999997  45678999999999999999998876654 4566 89998865

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.8e-19  Score=166.38  Aligned_cols=293  Identities=18%  Similarity=0.172  Sum_probs=201.9

Q ss_pred             eeecccCcchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChH
Q psy12638         38 CYGLIVPKSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLP  115 (334)
Q Consensus        38 ~~~~~~~~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip  115 (334)
                      ++-...|+.|..|+++|.+|+. .+++|..+.+.|+||+|+++|++++++++..|+.+|.||+. ++++|..+.+.|+||
T Consensus        10 ~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~   89 (457)
T d1xm9a1          10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIR   89 (457)
T ss_dssp             HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChH
Confidence            3444556778899999999997 57899999999999999999999999999999999999996 579999999999999


Q ss_pred             HHHHhcc---CCchHHHHHHHHHHccCChhhhhHhhccCcHHHHHHHhc---------------cCCCCchHHHHHHHHH
Q psy12638        116 KLVSLLE---EGKHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLMNMLL---------------VEQDDETDNVLVALCI  177 (334)
Q Consensus       116 ~Lv~lL~---~~~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv~LL~---------------~~~~~~~~~~~~~ll~  177 (334)
                      .|+.++.   ++..+..|+.+|.+++.++..+..+... +++.++..+.               ...+..+...+...+.
T Consensus        90 ~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~  168 (457)
T d1xm9a1          90 EAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLR  168 (457)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHH
Confidence            9999994   3457889999999999998888777764 4455544432               2234455555667778


Q ss_pred             HHccCcchHHHHHhc-CchHHHHHHHhcCChH---------HHHHHHHH---------------H---------------
Q psy12638        178 NLALNSRNAELMLKN-RQLELLMIQAFTQKNI---------LLLKVIRN---------------M---------------  217 (334)
Q Consensus       178 nLs~~~~n~~~i~~~-~gl~~Lv~~l~~~~d~---------~~~k~l~n---------------L---------------  217 (334)
                      +++.+++++..+... |+++.++..+.+..+.         .....+++               +               
T Consensus       169 ~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (457)
T d1xm9a1         169 NLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG  248 (457)
T ss_dssp             HHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------
T ss_pred             HHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhh
Confidence            899999988887754 5677887766431100         00000000               0               


Q ss_pred             ---------------------hcCCCchhhh--hhhHHHHHHHhhcCCccchh---------------------------
Q psy12638        218 ---------------------SIHSNVKHYF--VDYIGDIANCVQKEKDENIK---------------------------  247 (334)
Q Consensus       218 ---------------------a~~~~~~~~f--~~~i~~L~~~l~~~~~~~~~---------------------------  247 (334)
                                           +.+......+  .+.+..++..+...+..+..                           
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  328 (457)
T d1xm9a1         249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL  328 (457)
T ss_dssp             -----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence                                 0000000001  23445555444332211100                           


Q ss_pred             ----HHhhcHH----------HHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccc----cCCchHHHHHHHHHHHHHcC
Q psy12638        248 ----LECLGTL----------EVINFIGTAASDPISAEHFCKNSTVDLLINLLKEM----QEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       248 ----ve~Lg~l----------eav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~----~~dde~vlqi~~~l~~l~~~  309 (334)
                          ++.+..+          .++.+++.++.++..++.+.+. ++|.++++|...    ..++++...++.++..++.+
T Consensus       329 ~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~-~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~  407 (457)
T d1xm9a1         329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS  407 (457)
T ss_dssp             TSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHH-THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT
T ss_pred             HcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHh-hHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcC
Confidence                1111000          5788999999999988887765 589999999753    23457888889999999866


Q ss_pred             ch-hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        310 AS-CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       310 ~~-~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      ++ .++.+.+. +.++.|++++++.
T Consensus       408 ~~~~~~~l~~~-g~i~~L~~l~~~~  431 (457)
T d1xm9a1         408 QPQLAKQYFSS-SMLNNIINLCRSS  431 (457)
T ss_dssp             CTHHHHHHCCH-HHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHC-CCHHHHHHHHhCC
Confidence            55 66666664 4455999999864

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.1e-17  Score=156.05  Aligned_cols=279  Identities=14%  Similarity=0.138  Sum_probs=211.3

Q ss_pred             cchhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      +-|..|+.+|.+++. .++++..+.+.|++|+++++|.+++.++++.|+.+|.|++.+ ++.|..+.+.|+++.++.++.
T Consensus        72 ~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~  151 (434)
T d1q1sc_          72 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA  151 (434)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHH
Confidence            346689999999975 567999999999999999999999999999999999999987 588899999999999999996


Q ss_pred             CCc-------hHHHHHHHHHHccCChhh-hhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcc-hHHHHHhcC
Q psy12638        123 EGK-------HQKIILQLLYHLSIEDRV-KAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSR-NAELMLKNR  193 (334)
Q Consensus       123 ~~~-------~~~~al~~L~~LS~~~~~-r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~-n~~~i~~~~  193 (334)
                      .+.       ....+...+.+++..... .......+.+|.|+.++.+ +++++...++..+.+++.++. ....+.+.|
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  230 (434)
T d1q1sc_         152 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH-NDPEVLADSCWAISYLTDGPNERIEMVVKKG  230 (434)
T ss_dssp             SSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred             hcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhc-cccchhhhHHhhhcccchhhhhhHHHHhhcc
Confidence            432       123455667777776433 3333456789999999875 566776677777889977654 556667889


Q ss_pred             chHHHHHHHhcCChHH---HHHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-C
Q psy12638        194 QLELLMIQAFTQKNIL---LLKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-D  266 (334)
Q Consensus       194 gl~~Lv~~l~~~~d~~---~~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~  266 (334)
                      +++.+++.+.+++..+   .++++++++.+++.... +  .+.++.+..++.+.+ .+. .+     .++.+++.++. +
T Consensus       231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v-~~-----~a~~~L~~l~~~~  303 (434)
T d1q1sc_         231 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNI-QK-----EATWTMSNITAGR  303 (434)
T ss_dssp             CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHH-HH-----HHHHHHHHHTTSC
T ss_pred             cchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc-hhh-hH-----HHHHHHhhhcccc
Confidence            9999999887766654   36788999987654333 2  366777777775443 222 22     25677788887 5


Q ss_pred             cchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch--hhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        267 PISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS--CQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       267 ~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~--~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      ++....+.+.|++|.+++++.  +.+.++..+++.++..++.+.+  ....+.+ .++..+|+++|++++
T Consensus       304 ~~~~~~i~~~~~i~~li~~l~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         304 QDQIQQVVNHGLVPFLVGVLS--KADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHHTTSSC
T ss_pred             chhHHHHhhhhhHHHHHHHHh--ccChHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhcCCC
Confidence            667778899999999999997  4567899999999999986644  3344555 566669999998764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3.9e-17  Score=158.55  Aligned_cols=277  Identities=12%  Similarity=0.139  Sum_probs=213.9

Q ss_pred             chhHHHHHHHhccc-chhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhccC
Q psy12638         46 SKREGRQDSRKLSV-YHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLEE  123 (334)
Q Consensus        46 ~~~~A~~~L~~LSi-~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~~  123 (334)
                      -+.+|+.+|.+++. .++....+...|+++.++.++.+++.+++..|+.+|.||+.+ ++.|..+.+.|++|+|+.++.+
T Consensus       136 iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~  215 (503)
T d1wa5b_         136 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS  215 (503)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc
Confidence            35689999999986 456778889999999999999999999999999999999986 6999999999999999999964


Q ss_pred             C--chHHHHHHHHHHccCChhhh-hHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCc-chHHHHHhcCchHHHH
Q psy12638        124 G--KHQKIILQLLYHLSIEDRVK-AMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNS-RNAELMLKNRQLELLM  199 (334)
Q Consensus       124 ~--~~~~~al~~L~~LS~~~~~r-~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~-~n~~~i~~~~gl~~Lv  199 (334)
                      +  ..+..++.+|.+++...... ......+++|.|+.++.+ ++.++...+...+.+++... .....+.+.|+++.++
T Consensus       216 ~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~-~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~  294 (503)
T d1wa5b_         216 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV  294 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhh
Confidence            4  56778899999998764333 333456899999999975 55666666666777887544 4567788999999999


Q ss_pred             HHHhcCChHH---HHHHHHHHhcCCCchhh--h-hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHH
Q psy12638        200 IQAFTQKNIL---LLKVIRNMSIHSNVKHY--F-VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEH  272 (334)
Q Consensus       200 ~~l~~~~d~~---~~k~l~nLa~~~~~~~~--f-~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~  272 (334)
                      .++.+++..+   ++.++.|++.+.+....  + .++++.+..++.+.+ .+...      +++.++++++. +++....
T Consensus       295 ~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~i~~------~~~~~l~nl~~~~~~~~~~  367 (503)
T d1wa5b_         295 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKK------EACWTISNITAGNTEQIQA  367 (503)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHH------HHHHHHHHHTTSCHHHHHH
T ss_pred             hcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCC-HHHHH------HHHHHHHHHhhccHHHHHH
Confidence            9887766543   47789999987655433  2 367777777765443 22222      25677788877 6677778


Q ss_pred             hhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch----hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        273 FCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS----CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       273 l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~----~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      +.+.|++|++++++.  ..+.++..++++++..++.+..    ....+.. .+++.+|+++|+.+
T Consensus       368 i~~~~~l~~li~~l~--~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~-~~~l~~l~~~L~~~  429 (503)
T d1wa5b_         368 VIDANLIPPLVKLLE--VAEYKTKKEACWAISNASSGGLQRPDIIRYLVS-QGCIKPLCDLLEIA  429 (503)
T ss_dssp             HHHTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH-TTCHHHHHHHTTTC
T ss_pred             HHHccccchhHHhcc--cCChhHHHHHHHHHHHHHhcccccHHHHHHHHH-CCcHHHHHHHhcCC
Confidence            889999999999997  4556899999999999986443    2333444 56777999999764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3.8e-17  Score=158.65  Aligned_cols=276  Identities=11%  Similarity=0.105  Sum_probs=208.6

Q ss_pred             hhHHHHHHHhcccc--hhhHHHhHhCCcchHHHhhccCC-ChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         47 KREGRQDSRKLSVY--HVNKEQMANLNLIEKLPRILMIE-DSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        47 ~~~A~~~L~~LSi~--~enk~~m~~~g~I~~Lv~LL~~~-~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      +..|+..++++...  ...-..+.+.|++|+|++++.++ ++.++..|+.+|.|++.+ ++....+.+.|++|.++.+|.
T Consensus        93 ~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~  172 (503)
T d1wa5b_          93 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY  172 (503)
T ss_dssp             HHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhc
Confidence            34788888776432  22466899999999999999864 567999999999999975 578888999999999999995


Q ss_pred             --CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch-HHHHHhcCchHHH
Q psy12638        123 --EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN-AELMLKNRQLELL  198 (334)
Q Consensus       123 --~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n-~~~i~~~~gl~~L  198 (334)
                        +++.++.|+.+|.||+.+ ++.|..+.+.|++++|+.++.+ ....+...+..++.|++..... .......++++.|
T Consensus       173 s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~-~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l  251 (503)
T d1wa5b_         173 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL  251 (503)
T ss_dssp             HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHH
T ss_pred             CCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc-CCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence              456899999999999875 6899999999999999999975 4556666666788899866544 3333445788888


Q ss_pred             HHHHhcCChHHH---HHHHHHHhcCCCchhh-h--hhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCC-cchHH
Q psy12638        199 MIQAFTQKNILL---LKVIRNMSIHSNVKHY-F--VDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASD-PISAE  271 (334)
Q Consensus       199 v~~l~~~~d~~~---~k~l~nLa~~~~~~~~-f--~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~-~~~~~  271 (334)
                      +..+.+++....   ..++.+++.+.+.... +  .+.++.++.++.+.+ .....      .++.+++.++.. +....
T Consensus       252 ~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~------~al~~l~nl~~~~~~~~~  324 (503)
T d1wa5b_         252 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES-TLVQT------PALRAVGNIVTGNDLQTQ  324 (503)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHH------HHHHHHHHHTTSCHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCc-hhhhh------hHHHHHHHHHHHHHHHHH
Confidence            888766554433   4568888877655433 2  467888888775433 22221      256778999874 44556


Q ss_pred             HhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcCch-hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        272 HFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRHAS-CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       272 ~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~~~-~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      .+.+.|+++.|..+++  ..++++.-++++++..++.+++ .+..+.. .++...++++|.+.
T Consensus       325 ~~~~~~~l~~l~~ll~--~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~-~~~l~~li~~l~~~  384 (503)
T d1wa5b_         325 VVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAVID-ANLIPPLVKLLEVA  384 (503)
T ss_dssp             HHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred             hhhccchHHHHHHHhc--CCCHHHHHHHHHHHHHHhhccHHHHHHHHH-ccccchhHHhcccC
Confidence            7888999999999997  4567888999999999988766 5555554 56666999998764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.1e-15  Score=133.48  Aligned_cols=197  Identities=14%  Similarity=0.111  Sum_probs=155.9

Q ss_pred             CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHH-hcc--CCchHHHHHHHHHHccCC-hhhhh
Q psy12638         70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVS-LLE--EGKHQKIILQLLYHLSIE-DRVKA  145 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~-lL~--~~~~~~~al~~L~~LS~~-~~~r~  145 (334)
                      ....|.......+.+.+.+..|+..|.+|+.+.+++..+++.|++|+++. +++  +++.+..|+.+|.+++.+ +..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~   95 (264)
T d1xqra1          16 QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE   95 (264)
T ss_dssp             SCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555666778899999999999999999999999999999986 564  446789999999999975 67899


Q ss_pred             HhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCCch
Q psy12638        146 MFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSNVK  224 (334)
Q Consensus       146 ~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~~~  224 (334)
                      .+.+.|++|+|++++.+.++..+...++..+.+++ .++.++..+.+.||++.|+..+.+++..+..             
T Consensus        96 ~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~-------------  162 (264)
T d1xqra1          96 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV-------------  162 (264)
T ss_dssp             HHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH-------------
T ss_pred             HHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHH-------------
Confidence            99999999999999987666777777777788886 4556788888999999998876543322111             


Q ss_pred             hhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHH
Q psy12638        225 HYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVF  303 (334)
Q Consensus       225 ~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l  303 (334)
                                                    .++.+++.++. +++....+.+.|++|.|+.+|+  .+|.++.-+++.++
T Consensus       163 ------------------------------~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~--~~~~~~~~~a~~aL  210 (264)
T d1xqra1         163 ------------------------------KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGAL  210 (264)
T ss_dssp             ------------------------------HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT--SCCSTHHHHHHHHH
T ss_pred             ------------------------------HHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHc--CCCHHHHHHHHHHH
Confidence                                          13445565554 6777888999999999999997  45678999999999


Q ss_pred             HHHHcCch
Q psy12638        304 YQICRHAS  311 (334)
Q Consensus       304 ~~l~~~~~  311 (334)
                      +.|+.+.+
T Consensus       211 ~~L~~~~~  218 (264)
T d1xqra1         211 CSLVTDFP  218 (264)
T ss_dssp             HHHHTTCH
T ss_pred             HHHHhcCH
Confidence            99997665

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.4e-15  Score=134.00  Aligned_cols=179  Identities=17%  Similarity=0.131  Sum_probs=152.0

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHH-hhccCCChhHHHHHHHHHHhhcCC-hhHHHHHHhcCChHHHHHhcc
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLP-RILMIEDSNLQSSTLKLLFNLSFD-TNLREKIIKIGFLPKLVSLLE  122 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv-~LL~~~~~~l~~~al~~L~NLS~d-~~~r~~iv~~g~Ip~Lv~lL~  122 (334)
                      ..|..|+..|..|+...+|+..+.+.|++++++ .++.+++++++..|+.+|.|++.+ +.++..+++.|+||+|++++.
T Consensus        32 ~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~  111 (264)
T d1xqra1          32 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  111 (264)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhh
Confidence            445578889999999999999999999999988 589999999999999999999985 689999999999999999994


Q ss_pred             ---CCchHHHHHHHHHHccCC-hhhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHHc-cCcchHHHHHhcCchHH
Q psy12638        123 ---EGKHQKIILQLLYHLSIE-DRVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINLA-LNSRNAELMLKNRQLEL  197 (334)
Q Consensus       123 ---~~~~~~~al~~L~~LS~~-~~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs-~~~~n~~~i~~~~gl~~  197 (334)
                         ++..+..|+.+|.+++.+ +.++..|.+.|+++.|++++.+ ++..+...++.++.|++ .++.++..+.+.|+++.
T Consensus       112 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~  190 (264)
T d1xqra1         112 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  190 (264)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhc-CchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHH
Confidence               345688899999999864 6789999999999999999985 56677777777788875 57889999999999999


Q ss_pred             HHHHHhcCChHH---HHHHHHHHhcCCCch
Q psy12638        198 LMIQAFTQKNIL---LLKVIRNMSIHSNVK  224 (334)
Q Consensus       198 Lv~~l~~~~d~~---~~k~l~nLa~~~~~~  224 (334)
                      |+.++.+.+...   ++.++.+++.+.+..
T Consensus       191 L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~  220 (264)
T d1xqra1         191 LVALVRTEHSPFHEHVLGALCSLVTDFPQG  220 (264)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            999987655443   466788998776543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=3.1e-05  Score=73.56  Aligned_cols=239  Identities=15%  Similarity=0.201  Sum_probs=154.2

Q ss_pred             hhccCCChhHHHHHHHHHHhhcCChhHHHHHH--hcCChHHHHHhccC----C---------------chHHHHHHHHHH
Q psy12638         78 RILMIEDSNLQSSTLKLLFNLSFDTNLREKII--KIGFLPKLVSLLEE----G---------------KHQKIILQLLYH  136 (334)
Q Consensus        78 ~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv--~~g~Ip~Lv~lL~~----~---------------~~~~~al~~L~~  136 (334)
                      .+..+++.+.+..++++|-.|...++.|..+.  +...+++|+++|+.    .               .++..++-.++.
T Consensus       172 ~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWl  251 (477)
T d1ho8a_         172 ILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWL  251 (477)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHH
T ss_pred             HhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHH
Confidence            34477888999999999999999999999986  45678888888842    0               235668888999


Q ss_pred             ccCChhhhhHhhccC--cHHHHHHHhccCCCCchHHHHHHHHHHHccCcc------hHHHHHhcCchHHHHHHHhcC--C
Q psy12638        137 LSIEDRVKAMFAYTN--CMSLLMNMLLVEQDDETDNVLVALCINLALNSR------NAELMLKNRQLELLMIQAFTQ--K  206 (334)
Q Consensus       137 LS~~~~~r~~i~~t~--~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~------n~~~i~~~~gl~~Lv~~l~~~--~  206 (334)
                      ||.+++....+.+.+  -|+.|++++...+-+.+..-+++++.||.....      ....|+..+ +.++++.+...  .
T Consensus       252 LSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~-~l~~l~~L~~r~~~  330 (477)
T d1ho8a_         252 LTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGN-ALPTVQSLSERKYS  330 (477)
T ss_dssp             HTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHC-HHHHHHHHHSSCCS
T ss_pred             HHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcc-hhHHHHHHhcCCCC
Confidence            999999999888764  599999999876666665566678889964422      134455554 44556665543  4


Q ss_pred             hHHHHHHHHHHhcCCC----chhhhhhhHHHHHHHhhc----CCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCc
Q psy12638        207 NILLLKVIRNMSIHSN----VKHYFVDYIGDIANCVQK----EKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNST  278 (334)
Q Consensus       207 d~~~~k~l~nLa~~~~----~~~~f~~~i~~L~~~l~~----~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~  278 (334)
                      |+.+..-+..+...=.    ....|..|...+-.=-.+    |.++.|=-|-..-+          .+.++.       +
T Consensus       331 Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf----------~e~~~~-------l  393 (477)
T d1ho8a_         331 DEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF----------KKDNYK-------I  393 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG----------SSGGGH-------H
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhh----------cccchH-------H
Confidence            6655433333322111    111155555544321111    01122222221111          133332       6


Q ss_pred             hHHHHHHhccc-------cCCchHHHHH-HHHHHHHHcCchhhHHHhhcCCcHHHHHHhhhcCC
Q psy12638        279 VDLLINLLKEM-------QEDDEIVLQI-LYVFYQICRHASCQNYLIKETDAPAYMIDLLNDGN  334 (334)
Q Consensus       279 I~~Lv~LL~~~-------~~dde~vlqi-~~~l~~l~~~~~~~~~i~~~~~i~~~Li~LL~d~n  334 (334)
                      +..|+++|.+.       ..+|..+++| ++=+|.+++|-+....++.+-|+-..+++||.++|
T Consensus       394 lk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d  457 (477)
T d1ho8a_         394 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD  457 (477)
T ss_dssp             HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS
T ss_pred             HHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC
Confidence            88999999741       3456666666 88899999888766678888888888889998875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.011  Score=49.58  Aligned_cols=95  Identities=14%  Similarity=0.049  Sum_probs=66.7

Q ss_pred             CCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHh
Q psy12638         70 LNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMF  147 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i  147 (334)
                      ....+.|+++|.++++.++..|+..|..+..          ..++|.|+.+++++  ..+..|+..|..+......... 
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~-   86 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-   86 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc-
Confidence            4466789999999999999999999987753          23579999999654  5688888889888755433222 


Q ss_pred             hccCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638        148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINL  179 (334)
Q Consensus       148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL  179 (334)
                          .++.+...+.+.+++.+...++..+.++
T Consensus        87 ----~~~~l~~~~l~d~~~~vr~~a~~aL~~~  114 (276)
T d1oyza_          87 ----VFNILNNMALNDKSACVRATAIESTAQR  114 (276)
T ss_dssp             ----HHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence                2455666666656666665554444444

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.007  Score=56.97  Aligned_cols=237  Identities=13%  Similarity=0.114  Sum_probs=141.2

Q ss_pred             HHHHHHHhcccchhhHHHhH--hCCcchHHHhhccC-----------------CChhHHHHHHHHHHhhcCChhHHHHHH
Q psy12638         49 EGRQDSRKLSVYHVNKEQMA--NLNLIEKLPRILMI-----------------EDSNLQSSTLKLLFNLSFDTNLREKII  109 (334)
Q Consensus        49 ~A~~~L~~LSi~~enk~~m~--~~g~I~~Lv~LL~~-----------------~~~~l~~~al~~L~NLS~d~~~r~~iv  109 (334)
                      -|+..|.-|-..++.|....  +...+++|+++|..                 .+.+++..++-+++-|||+++....+.
T Consensus       184 i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~  263 (477)
T d1ho8a_         184 VCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELV  263 (477)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            45677777777788887763  34556777766633                 123889999999999999999999999


Q ss_pred             hc--CChHHHHHhcc-C--CchHHHHHHHHHHccCChh--hh----hHhhccCcHHHHHHHhccCCCC--chHHHHHHHH
Q psy12638        110 KI--GFLPKLVSLLE-E--GKHQKIILQLLYHLSIEDR--VK----AMFAYTNCMSLLMNMLLVEQDD--ETDNVLVALC  176 (334)
Q Consensus       110 ~~--g~Ip~Lv~lL~-~--~~~~~~al~~L~~LS~~~~--~r----~~i~~t~~i~~Lv~LL~~~~~~--~~~~~~~~ll  176 (334)
                      +.  +.||.|+.+++ +  +.....++++|.|+.....  .+    ..+...+ ++++++.|......  ++..+. ..+
T Consensus       264 ~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~-~l~~l~~L~~r~~~Dedl~edl-~~L  341 (477)
T d1ho8a_         264 QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGN-ALPTVQSLSERKYSDEELRQDI-SNL  341 (477)
T ss_dssp             TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHC-HHHHHHHHHSSCCSSHHHHHHH-HHH
T ss_pred             HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcc-hhHHHHHHhcCCCCCHHHHHHH-HHH
Confidence            86  45999999995 3  3467789999999976421  22    2222333 45566666554433  332221 111


Q ss_pred             HHHccCcchHHHHHhcCchHHHHHHHhcCChHHHHHHHHHHhcCCC-ch---------hhh----hhhHHHHHHHhhc--
Q psy12638        177 INLALNSRNAELMLKNRQLELLMIQAFTQKNILLLKVIRNMSIHSN-VK---------HYF----VDYIGDIANCVQK--  240 (334)
Q Consensus       177 ~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~~~k~l~nLa~~~~-~~---------~~f----~~~i~~L~~~l~~--  240 (334)
                      ..     .-.+.+.+---+..-..-+.+|.          | .|.+ .+         ..|    ...+..|++++.+  
T Consensus       342 ~~-----~L~~~~k~lTsfd~Y~~Ev~Sg~----------L-~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~  405 (477)
T d1ho8a_         342 KE-----ILENEYQELTSFDEYVAELDSKL----------L-CWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV  405 (477)
T ss_dssp             HH-----HHHHHHHTCCHHHHHHHHHHHTC----------C-CCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHhcCcHHHHHHHHhcCC----------C-CCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcc
Confidence            11     01111111111222222222211          1 1211 11         112    2467777777753  


Q ss_pred             --C---CccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHHHHHHcC
Q psy12638        241 --E---KDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVFYQICRH  309 (334)
Q Consensus       241 --~---~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l~~l~~~  309 (334)
                        .   ...|..+-++    |+-=+|-+++ .|..+..+.+.|+=..+.+++.  .+|+++.-+++.|+..+..|
T Consensus       406 ~~~~~~~s~D~~~lAV----Ac~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~--h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         406 RNGDVNAKQEKIIIQV----ALNDITHVVELLPESIDVLDKTGGKADIMELLN--HSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HTTCCCSHHHHHHHHH----HHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS--CSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCcceeeh----hhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Confidence              1   1112221111    3334788888 7888889888898777777885  67899999999999988754

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0048  Score=58.45  Aligned_cols=97  Identities=6%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCC--hhhhhHh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIE--DRVKAMF  147 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~--~~~r~~i  147 (334)
                      ++|.+..++..++..++..++.+|.+++..  .........++|.+..+++++  +.+..|+..+..++..  ...+...
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~  320 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKA--VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV  320 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHH--HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHH--hhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            667777888888888888888888888742  222344456789999999654  4577777777666542  2233333


Q ss_pred             hccCcHHHHHHHhccCCCCchHHH
Q psy12638        148 AYTNCMSLLMNMLLVEQDDETDNV  171 (334)
Q Consensus       148 ~~t~~i~~Lv~LL~~~~~~~~~~~  171 (334)
                      .-...+|.+..++.. ++..++..
T Consensus       321 ~~~~i~~~l~~~~~d-~~~~vr~~  343 (588)
T d1b3ua_         321 IMSQILPCIKELVSD-ANQHVKSA  343 (588)
T ss_dssp             HHHTHHHHHHHHHTC-SCHHHHHH
T ss_pred             hHHHHHHHHHHhhcC-CChHHHHH
Confidence            334567777777653 44454443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.057  Score=50.64  Aligned_cols=239  Identities=13%  Similarity=0.138  Sum_probs=120.8

Q ss_pred             cchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCCc--hHHHHHHHHHHccCC--hhhhhHh
Q psy12638         72 LIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEGK--HQKIILQLLYHLSIE--DRVKAMF  147 (334)
Q Consensus        72 ~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~~--~~~~al~~L~~LS~~--~~~r~~i  147 (334)
                      +++++..++..++..+++.|+..|..++.......  ++.-++|.+..+.+++.  .+..|+.++..+...  +..+.. 
T Consensus        88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~--~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~~-  164 (588)
T d1b3ua_          88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSD--LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE-  164 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH-
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHHH-
Confidence            45566678888889999999999999987533221  33345665556665543  355555555555432  233333 


Q ss_pred             hccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcCChHH----HHHHHHHHhcCCCc
Q psy12638        148 AYTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQKNIL----LLKVIRNMSIHSNV  223 (334)
Q Consensus       148 ~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~~d~~----~~k~l~nLa~~~~~  223 (334)
                          .++.+.+++. .+++.+++.+...+..++..-...  .... .+.+++..+.+.+++.    .+.++..++..-+.
T Consensus       165 ----l~~~~~~l~~-D~~~~VR~~a~~~l~~~~~~~~~~--~~~~-~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~  236 (588)
T d1b3ua_         165 ----LRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLELD--NVKS-EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ  236 (588)
T ss_dssp             ----HHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCHH--HHHH-THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred             ----HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcHH--HHHH-HHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH
Confidence                3667777775 466777776655555554332211  1122 3333444444433332    34455555543222


Q ss_pred             hhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhhCCchHHHHHHhccccCCchHHHHHHHHH
Q psy12638        224 KHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCKNSTVDLLINLLKEMQEDDEIVLQILYVF  303 (334)
Q Consensus       224 ~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~~g~I~~Lv~LL~~~~~dde~vlqi~~~l  303 (334)
                      .......++.+...+. .+  ..-+-.    .++.++|.++....  .......++|.+..+++.  .+.++...++.++
T Consensus       237 ~~~~~~i~~~l~~~~~-D~--~~~Vr~----~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d--~~~~vr~~a~~~l  305 (588)
T d1b3ua_         237 EDLEALVMPTLRQAAE-DK--SWRVRY----MVADKFTELQKAVG--PEITKTDLVPAFQNLMKD--CEAEVRAAASHKV  305 (588)
T ss_dssp             HHHHHHTHHHHHHHHT-CS--SHHHHH----HHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTC--SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc-cc--cHHHHH----HHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhc--cchHHHHHHHHHH
Confidence            2111122333333332 22  111111    14455566554211  112333578888888873  4456777778888


Q ss_pred             HHHHcCch--hhHHHhhcCCcHHHHHHhhhcC
Q psy12638        304 YQICRHAS--CQNYLIKETDAPAYMIDLLNDG  333 (334)
Q Consensus       304 ~~l~~~~~--~~~~i~~~~~i~~~Li~LL~d~  333 (334)
                      +.++..-.  ....... +.+...+..+++|.
T Consensus       306 ~~~~~~l~~~~~~~~~~-~~i~~~l~~~~~d~  336 (588)
T d1b3ua_         306 KEFCENLSADCRENVIM-SQILPCIKELVSDA  336 (588)
T ss_dssp             HHHHHTSCTTTHHHHHH-HTHHHHHHHHHTCS
T ss_pred             HHHHHHHhhhhhhhhhH-HHHHHHHHHhhcCC
Confidence            87774422  2221111 13443555555554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.35  E-value=0.0035  Score=46.63  Aligned_cols=82  Identities=17%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccCChhhhhHhh
Q psy12638         71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSIEDRVKAMFA  148 (334)
Q Consensus        71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~~~~~r~~i~  148 (334)
                      ..+++|++.+.+++..++..|+.+|.++..          .+.+|.|.++|+  ++..+..|+..|..+..         
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~---------   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------
Confidence            468899999999999999999999988753          235799999995  55678888888877643         


Q ss_pred             ccCcHHHHHHHhccCCCCchHHHHH
Q psy12638        149 YTNCMSLLMNMLLVEQDDETDNVLV  173 (334)
Q Consensus       149 ~t~~i~~Lv~LL~~~~~~~~~~~~~  173 (334)
                       .+.++.|..++. .+++.+...++
T Consensus        83 -~~~~~~L~~ll~-d~~~~vr~~A~  105 (111)
T d1te4a_          83 -ERVRAAMEKLAE-TGTGFARKVAV  105 (111)
T ss_dssp             -HHHHHHHHHHTT-SCCTHHHHHHH
T ss_pred             -cchHHHHHHHHc-CCCHHHHHHHH
Confidence             347888888886 46677665443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.33  Score=39.97  Aligned_cols=81  Identities=2%  Similarity=-0.077  Sum_probs=54.9

Q ss_pred             cchhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhc-cC
Q psy12638         45 KSKREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLL-EE  123 (334)
Q Consensus        45 ~~~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL-~~  123 (334)
                      .-|..|+..|.....          ..+++.|++++.+++..++..|+..|..+.........+     ++.+...+ ++
T Consensus        34 ~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-----~~~l~~~~l~d   98 (276)
T d1oyza_          34 LKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-----FNILNNMALND   98 (276)
T ss_dssp             HHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-----HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-----HHHHHHHHhcC
Confidence            344466666655421          246899999999999999999999999998655444333     33444444 43


Q ss_pred             --CchHHHHHHHHHHccCC
Q psy12638        124 --GKHQKIILQLLYHLSIE  140 (334)
Q Consensus       124 --~~~~~~al~~L~~LS~~  140 (334)
                        +..+..++..|.+++..
T Consensus        99 ~~~~vr~~a~~aL~~~~~~  117 (276)
T d1oyza_          99 KSACVRATAIESTAQRCKK  117 (276)
T ss_dssp             SCHHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHccc
Confidence              44677788878777544

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.048  Score=55.65  Aligned_cols=225  Identities=13%  Similarity=0.139  Sum_probs=113.1

Q ss_pred             CcchHHHhhccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHc----cCChhhh
Q psy12638         71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHL----SIEDRVK  144 (334)
Q Consensus        71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~L----S~~~~~r  144 (334)
                      .+++.|+++|..++.+++..|+++|.-|+....  +..+ ..+++.|...+.  ++..+..+...|..+    .......
T Consensus        45 ~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~--~~~~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~  121 (1207)
T d1u6gc_          45 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK--EYQV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS  121 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC--HHHH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc--HhhH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccc
Confidence            478999999999999999999999999987532  1222 235677776663  344455554444433    1111111


Q ss_pred             hHhh--ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcch-HHHHHhcCchHHHHHHHhcCChHH---HHHHHHHHh
Q psy12638        145 AMFA--YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRN-AELMLKNRQLELLMIQAFTQKNIL---LLKVIRNMS  218 (334)
Q Consensus       145 ~~i~--~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n-~~~i~~~~gl~~Lv~~l~~~~d~~---~~k~l~nLa  218 (334)
                      ....  -...++.+...+.+..+..+..+++.++..+...... ..... ...++.++..+.+.+..+   ++.++..++
T Consensus       122 ~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~-~~il~~l~~~l~~~~~~vR~~A~~~l~~l~  200 (1207)
T d1u6gc_         122 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLV  200 (1207)
T ss_dssp             CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            1110  0113344455554434445555555555544221111 00000 012333333333333332   355677776


Q ss_pred             cCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcCCcchHHHhhh--CCchHHHHHHhccccCCchHH
Q psy12638        219 IHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAASDPISAEHFCK--NSTVDLLINLLKEMQEDDEIV  296 (334)
Q Consensus       219 ~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~~~~~~~~l~~--~g~I~~Lv~LL~~~~~dde~v  296 (334)
                      ..-+. ..+.+.+..+++.+..+........      ++.++|.++....  ..+..  ..++|.+.+.+.  .+++++.
T Consensus       201 ~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~------~~~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~--~~~~~~r  269 (1207)
T d1u6gc_         201 MSCGN-IVFVDLIEHLLSELSKNDSMSTTRT------YIQCIAAISRQAG--HRIGEYLEKIIPLVVKFCN--VDDDELR  269 (1207)
T ss_dssp             TTC-----CTTHHHHHHHHHHHTCSSCSCTT------HHHHHHHHHHHSS--GGGTTSCTTHHHHHHHHHS--SCCTTTH
T ss_pred             HHCCH-HHHHHHHHHHHHHHccCCCHHHHHH------HHHHHHHHHHHcc--hhhHHHHHHHHHHHHHHhc--CccHHHH
Confidence            65432 2245667777776654432221111      2344455554211  12222  257788888776  4566777


Q ss_pred             HHHHHHHHHHHcCc
Q psy12638        297 LQILYVFYQICRHA  310 (334)
Q Consensus       297 lqi~~~l~~l~~~~  310 (334)
                      -.++.++..++...
T Consensus       270 ~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         270 EYCIQAFESFVRRC  283 (1207)
T ss_dssp             HHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhC
Confidence            77778888887543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.22  Score=49.21  Aligned_cols=68  Identities=15%  Similarity=0.059  Sum_probs=48.8

Q ss_pred             CcchHHHhhccCCChhHHHHHHHHHHhhcCCh--hHHHHHHhcCChHHHHHhcc--CCchHHHHHHHHHHccC
Q psy12638         71 NLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT--NLREKIIKIGFLPKLVSLLE--EGKHQKIILQLLYHLSI  139 (334)
Q Consensus        71 g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~--~~r~~iv~~g~Ip~Lv~lL~--~~~~~~~al~~L~~LS~  139 (334)
                      .+++.|+..+.++++.++..|+.+|..++..-  +..... -..++|.+.+.+.  ++..+..|+.+|.++..
T Consensus       436 ~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         436 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEE  507 (888)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            46677888999999999999999999888531  222222 2457778887774  44567888888888764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.46  E-value=0.017  Score=42.60  Aligned_cols=78  Identities=8%  Similarity=0.014  Sum_probs=52.5

Q ss_pred             ccCCChhHHHHHHHHHHhhcCChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChhhhhHhhccCcHHHHH
Q psy12638         80 LMIEDSNLQSSTLKLLFNLSFDTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDRVKAMFAYTNCMSLLM  157 (334)
Q Consensus        80 L~~~~~~l~~~al~~L~NLS~d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~~r~~i~~t~~i~~Lv  157 (334)
                      |.++++.++..|+..|..+..           ..+|+|++.|+++  ..+..|+..|.++..          .+.+|.|+
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~-----------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~   59 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLI   59 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHH
Confidence            355666777777777766542           4678999999654  467777777765432          34789999


Q ss_pred             HHhccCCCCchHHHHHHHHHHH
Q psy12638        158 NMLLVEQDDETDNVLVALCINL  179 (334)
Q Consensus       158 ~LL~~~~~~~~~~~~~~ll~nL  179 (334)
                      ++|.. +++.+...++..+-.+
T Consensus        60 ~~l~d-~~~~VR~~a~~aL~~i   80 (111)
T d1te4a_          60 KLLED-DSGFVRSGAARSLEQI   80 (111)
T ss_dssp             HHHHH-CCTHHHHHHHHHHHHH
T ss_pred             hhhcc-chhHHHHHHHHHHHHh
Confidence            99974 6777766665555443

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.18  Score=49.90  Aligned_cols=127  Identities=11%  Similarity=0.107  Sum_probs=74.2

Q ss_pred             hhHHHHHHHhcccchhhHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCCh-hHHHHHHhcCChHHHHHhccCC-
Q psy12638         47 KREGRQDSRKLSVYHVNKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFDT-NLREKIIKIGFLPKLVSLLEEG-  124 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~enk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d~-~~r~~iv~~g~Ip~Lv~lL~~~-  124 (334)
                      |+.|..+|..++....+.  +. .-+++.+...+.+++...++.|+.+|..++... +.-...+ ..++|.|+..++++ 
T Consensus       374 r~~a~~~L~~l~~~~~~~--il-~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~  449 (888)
T d1qbkb_         374 RKCSAAALDVLANVYRDE--LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKK  449 (888)
T ss_dssp             HHHHHHHSTTTTTTCCSS--SH-HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHhhHhhhhHHH--HH-HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCC
Confidence            455666777776532211  11 113345556778888899999999999988642 1111111 23567777777654 


Q ss_pred             -chHHHHHHHHHHccCCh--hhhhHhhccCcHHHHHHHhccCCCCchHHHHHHHHHHH
Q psy12638        125 -KHQKIILQLLYHLSIED--RVKAMFAYTNCMSLLMNMLLVEQDDETDNVLVALCINL  179 (334)
Q Consensus       125 -~~~~~al~~L~~LS~~~--~~r~~i~~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nL  179 (334)
                       ..|..|+.+|..++..-  .....+ -...++.+++.+.+ +++.++..+...+.++
T Consensus       450 ~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d-~~~~V~~~a~~al~~l  505 (888)
T d1qbkb_         450 ALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILD-SNKRVQEAACSAFATL  505 (888)
T ss_dssp             HHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSS-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence             46787888888776421  111111 13478888887764 4556655554555555

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=1.2  Score=38.76  Aligned_cols=70  Identities=11%  Similarity=0.029  Sum_probs=45.3

Q ss_pred             CCcchHHHhhccCC--ChhHHHHHHHHHHhhcCChhH--HHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccC
Q psy12638         70 LNLIEKLPRILMIE--DSNLQSSTLKLLFNLSFDTNL--REKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSI  139 (334)
Q Consensus        70 ~g~I~~Lv~LL~~~--~~~l~~~al~~L~NLS~d~~~--r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~  139 (334)
                      ..+++.+++.+.++  +.+++..|++++.++......  ..........+.+..++.++  +.+..++..|..+..
T Consensus       170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  245 (458)
T d1ibrb_         170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS  245 (458)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            34567777777654  457899999999999865321  22233334556666777544  567777777777753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.90  E-value=4.6  Score=37.85  Aligned_cols=55  Identities=2%  Similarity=-0.103  Sum_probs=35.5

Q ss_pred             hhHHHHHHHhcccchh-hHHHhHhCCcchHHHhhccCCChhHHHHHHHHHHhhcCC
Q psy12638         47 KREGRQDSRKLSVYHV-NKEQMANLNLIEKLPRILMIEDSNLQSSTLKLLFNLSFD  101 (334)
Q Consensus        47 ~~~A~~~L~~LSi~~e-nk~~m~~~g~I~~Lv~LL~~~~~~l~~~al~~L~NLS~d  101 (334)
                      |.-|...+...+.... ....-.-..+++.++..+.++++.++..++.++..++..
T Consensus       386 ~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T d2bpta1         386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence            3344455555543221 111222234778888999999999999999999988753

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=0.44  Score=48.16  Aligned_cols=214  Identities=12%  Similarity=0.172  Sum_probs=116.4

Q ss_pred             hHHHhhccCCChhHHHHHHHHHHhhcC-ChhHHHHHHhcCChHHHHHhccCC--chHHHHHHHHHHccCChh--hhhHhh
Q psy12638         74 EKLPRILMIEDSNLQSSTLKLLFNLSF-DTNLREKIIKIGFLPKLVSLLEEG--KHQKIILQLLYHLSIEDR--VKAMFA  148 (334)
Q Consensus        74 ~~Lv~LL~~~~~~l~~~al~~L~NLS~-d~~~r~~iv~~g~Ip~Lv~lL~~~--~~~~~al~~L~~LS~~~~--~r~~i~  148 (334)
                      +.|...+.++++.++..+..+|..|+. ++        ...+|.|.+.++++  ..+..++..+..+..+..  ....+ 
T Consensus       931 ~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~--------~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l- 1001 (1207)
T d1u6gc_         931 ALLLKHCECAEEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL- 1001 (1207)
T ss_dssp             HHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH-
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHH-
Confidence            344455677777888888888888863 33        34789999999654  467778888877765532  22222 


Q ss_pred             ccCcHHHHHHHhccCCCCchHHHHHHHHHHHccCcchHHHHHhcCchHHHHHHHhcC----C----------------hH
Q psy12638        149 YTNCMSLLMNMLLVEQDDETDNVLVALCINLALNSRNAELMLKNRQLELLMIQAFTQ----K----------------NI  208 (334)
Q Consensus       149 ~t~~i~~Lv~LL~~~~~~~~~~~~~~ll~nLs~~~~n~~~i~~~~gl~~Lv~~l~~~----~----------------d~  208 (334)
                       ...|+.++..+. .++.+++..++..+..++.   +...++. +-++.++..+.+-    +                |.
T Consensus      1002 -~~li~~ll~~l~-d~~~~vR~~al~~l~~~~~---~~p~li~-~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~g 1075 (1207)
T d1u6gc_        1002 -KNCIGDFLKTLE-DPDLNVRRVALVTFNSAAH---NKPSLIR-DLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDG 1075 (1207)
T ss_dssp             -HHHSTTTHHHHS-SSSTHHHHHHHHHHHHHHH---HCGGGTG-GGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETH
T ss_pred             -HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH---hChHHHH-HHHHHHHHHHHHHhccchhheeeeecCCceeecCCc
Confidence             236777788886 4677776655444444432   2222222 2344444443321    0                11


Q ss_pred             -----HHHHHHHHHhcCCCchhhhhhhHHHHHHHhhcCCccchhHHhhcHHHHHHHHHHhcC-CcchHHHhhhCCchHHH
Q psy12638        209 -----LLLKVIRNMSIHSNVKHYFVDYIGDIANCVQKEKDENIKLECLGTLEVINFIGTAAS-DPISAEHFCKNSTVDLL  282 (334)
Q Consensus       209 -----~~~k~l~nLa~~~~~~~~f~~~i~~L~~~l~~~~~~~~~ve~Lg~leav~~lg~la~-~~~~~~~l~~~g~I~~L  282 (334)
                           .++.+++.+-....++....+++..+..-+..  ..|..  .+    +...+.+++. .|+.-....+ .++|+|
T Consensus      1076 l~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d--~~di~--~~----~~~~l~~l~~~~~~~~~~~l~-~~~~~~ 1146 (1207)
T d1u6gc_        1076 LDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD--HYDIK--ML----TFLMLVRLSTLCPSAVLQRLD-RLVEPL 1146 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS--CHHHH--HH----HHHHHHHHHHSCCHHHHTTTT-TTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHhcccc--hHHHH--HH----HHHHHHHHHHhCcHHHHHHHH-HHHHHH
Confidence                 12445555554433332222333333322211  12221  11    3334455544 4542222222 488999


Q ss_pred             HHHhcccc-CC---------chHHHHHHHHHHHHHcCch
Q psy12638        283 INLLKEMQ-ED---------DEIVLQILYVFYQICRHAS  311 (334)
Q Consensus       283 v~LL~~~~-~d---------de~vlqi~~~l~~l~~~~~  311 (334)
                      ...|..+- ++         +|..-.+++++..+.++++
T Consensus      1147 ~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~~~ 1185 (1207)
T d1u6gc_        1147 RATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPE 1185 (1207)
T ss_dssp             HHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence            99987542 22         5778888999999987755