Psyllid ID: psy12657

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSRVYVKPKKTG
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEcccccccEEEEEEEcccccccHHHHHcccccccccccEEEEEcccccccHHHHHHHHHHHcccccccccccccccccccccccEEcccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccccccccEEEEEEEccccccccEEEEEEEEEEccccccEEEEEEEEEcccEEEEEEEcccccHEEEEEEEcHHHHHHHHHHHHHHcHHHHHcccEEEEEEcccccHcHEHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccEEEEccccccHHHHHccccccccccHHcccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mikrrsvidipsfFVGSIlsvtsadkhdpnktrkFVGICIqkrycglrheFVLRNVVDNLGIeiaydlydptihnitVLRLEKRLDDDLLYLRDALPNVVDNLGIeiaydmydptihniTVLRLEKRLDDDLLYLrdalpqystfpfdmepeylldgapvpindikvklkprpwvgrwerkgykgiddvDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSnkklkksrvyvkpkktg
Flexible Loop (DISEMBL)
mikrrsvidipsffvgsilsvtsadkhdpnktrKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIaydlydptiHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEiaydmydpTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDgapvpindikvklkprpwvgrwerkgykgiddvdqhitekmkgqkkkleepwekydLMKEYRRTIPEEEQEEIFSEVFSELHqlslsnkklkksrvyvkpkktg
Low Complexity Region (SEG)
MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVlrlekrldddllylrdalPNVVDNLGIEIAYDMYDPTIHNITVlrlekrldddllylrdalPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPeeeqeeifsevfseLHQlslsnkklkksRVYVKPKKTG
Disordered region (IsUnstruct)
******VIDIPSFFVGSILSVTSAD****NKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQH********************************************************************
Disordered Region (DISOPRED)
******VIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVF**************************
Disordered Region (DISEMBL)
MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITE********LEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSRVYVKPKKTG
Disordered Region (DISPRO)
MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSR**V******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSRVYVKPKKTG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q9VHN6	306	39S ribosomal protein L19	yes	N/A	0.834	0.709	0.476	2e-67
Q95Y83	288	Probable 39S ribosomal pr	yes	N/A	0.815	0.736	0.378	1e-42
Q5R8M4	292	39S ribosomal protein L19	yes	N/A	0.665	0.592	0.397	4e-40
Q2HJI0	292	39S ribosomal protein L19	yes	N/A	0.665	0.592	0.397	3e-39
P49406	292	39S ribosomal protein L19	yes	N/A	0.665	0.592	0.392	4e-39
Q9D338	292	39S ribosomal protein L19	yes	N/A	0.665	0.592	0.392	3e-38
A0RPR5	118	50S ribosomal protein L19	yes	N/A	0.330	0.728	0.318	2e-06
A7GZB0	118	50S ribosomal protein L19	yes	N/A	0.326	0.720	0.348	2e-06
Q7MA03	118	50S ribosomal protein L19	yes	N/A	0.330	0.728	0.329	3e-06
Q8EWU9	145	50S ribosomal protein L19	yes	N/A	0.330	0.593	0.321	4e-06

>sp|Q9VHN6|RM19_DROME 39S ribosomal protein L19, mitochondrial OS=Drosophila melanogaster GN=mRpL19 PE=2 SV=1

 Score =  256 bits (653), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/260 (47%), Positives = 168/260 (64%), Gaps = 43/260 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR  ID+P F+VGS+L+VTS+D H   KT +FVGICI +  CGLR  F+LRN     
Sbjct: 90  MLDRRKQIDLPEFYVGSVLAVTSSDPHAAGKTSRFVGICINRDRCGLRARFILRN----- 144

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 V+D+ G+E+ Y++YDPTI  I 
Sbjct: 145 --------------------------------------VIDHQGMEVVYELYDPTILKIE 166

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLDD L YLRDALP+YSTF  +ME E L +GAPVP+NDIKV L+PRPW+ RWER
Sbjct: 167 VLRLEKRLDDSLFYLRDALPEYSTFDENMEAEPLEEGAPVPVNDIKVVLRPRPWLERWER 226

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
           +  +G+ ++D+++ +K +    K+++PWEKYD+MK+YR +IPEEEQ EIF+EV +ELH L
Sbjct: 227 QNLRGVANIDEYLKDKHRLSAAKVQKPWEKYDMMKDYRSSIPEEEQTEIFAEVHTELHAL 286

Query: 241 SLSNKKLKKSRVYVKPKKTG 260
            L  K+ K+ R ++KPK+  
Sbjct: 287 ELQRKRNKRKRTFIKPKQLA 306

Drosophila melanogaster (taxid: 7227)

>sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial OS=Caenorhabditis elegans GN=Y119C1B.4 PE=3 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/259 (37%), Positives = 142/259 (54%), Gaps = 47/259 (18%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M++RR  IDIP F+VGSI++VTS+DK+  +K  +FVGICI++   GL H+F LRN     
Sbjct: 73  MLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRFVGICIRREKEGLLHQFTLRNT---- 128

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                  ++N+G+E+ YD+Y+PTI  I 
Sbjct: 129 ---------------------------------------IENIGVEVVYDLYNPTIKKIE 149

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
            L+LEKRLD+DL YL DALP+YSTF F MEP+    G P+P+N+ KVKLK  PW  RWE 
Sbjct: 150 TLKLEKRLDNDLSYLVDALPEYSTFDFHMEPQAHPAGTPIPVNECKVKLKTPPWTRRWEV 209

Query: 181 KGYKGIDDVDQHITEKMKGQ-KKKLEEPWEKYDLMKEYRRTIPEEEQ---EEIFSEVFSE 236
              +GI+D     T   K +  K +   +EKYDL+ +YR +  +E++   ++   +   E
Sbjct: 210 ASVRGIEDTWTQATPWFKRKLHKTIVNDYEKYDLIADYRTSSTKEQEVFVQKQMQKFEKE 269

Query: 237 LHQLSLSNKKLKKSRVYVK 255
            H   L+ +++ KS    K
Sbjct: 270 RHAAGLTRRRILKSAAAYK 288

Caenorhabditis elegans (taxid: 6239)

>sp|Q5R8M4|RM19_PONAB 39S ribosomal protein L19, mitochondrial OS=Pongo abelii GN=MRPL19 PE=2 SV=1

 Score =  164 bits (416), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 46/219 (21%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M++RR V+ IP F+VGSIL VT+AD +   K  +F+GICIQ+   GL   F+LRN     
Sbjct: 99  MLERRKVLHIPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRN----- 153

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 V++  G+EI +++Y+P +  I 
Sbjct: 154 --------------------------------------VIEGQGVEICFELYNPRVQEIQ 175

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           V++LEKRLDD LLYLRDALP+YSTF  +M+PE       VP+N++KVK+KP+PW  RWER
Sbjct: 176 VVKLEKRLDDSLLYLRDALPEYSTFDVNMKPEVQEPNQKVPVNELKVKMKPKPWSKRWER 235

Query: 181 KGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
             +  KGI   D  +TE+   + +K  +PW ++D+M+EY
Sbjct: 236 PNFNIKGI-RFDLCLTEEQMKEAQKWSQPWLEFDMMREY 273

Pongo abelii (taxid: 9601)

>sp|Q2HJI0|RM19_BOVIN 39S ribosomal protein L19, mitochondrial OS=Bos taurus GN=MRPL19 PE=1 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 123/219 (56%), Gaps = 46/219 (21%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M++RR ++ IP F+VGSIL VT+AD +   KT +F+GICIQ+   GL   F+LRN +   
Sbjct: 99  MLERRKILHIPEFYVGSILRVTTADPYANGKTSQFLGICIQRSGKGLGATFILRNTI--- 155

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                   +  G+EI +++Y+P I  I 
Sbjct: 156 ----------------------------------------EGQGVEICFELYNPRIQEIQ 175

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           V++LEKRLDD LLYLRDALP+YSTF  +M+P        VPIN +KVK+KP+PW  RWER
Sbjct: 176 VVKLEKRLDDSLLYLRDALPEYSTFDMNMKPVAQEPSREVPINQLKVKMKPKPWSKRWER 235

Query: 181 KGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
             +  KGI   D  +TE+   + +K  +PW ++D+M+EY
Sbjct: 236 PKFNVKGI-RFDLCLTEEQMKEAQKWSQPWLEFDMMREY 273

Bos taurus (taxid: 9913)

>sp|P49406|RM19_HUMAN 39S ribosomal protein L19, mitochondrial OS=Homo sapiens GN=MRPL19 PE=1 SV=2

 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 124/219 (56%), Gaps = 46/219 (21%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M++RR V+ IP F+VGSIL VT+AD +   K  +F+GICIQ+   GL   F+LRNV    
Sbjct: 99  MLERRKVLHIPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNV---- 154

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                  ++  G+EI +++Y+P +  I 
Sbjct: 155 ---------------------------------------IEGQGVEICFELYNPRVQEIQ 175

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           V++LEKRLDD LLYLRDALP+YSTF  +M+P        VP+N++KVK+KP+PW  RWER
Sbjct: 176 VVKLEKRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWER 235

Query: 181 KGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
             +  KGI   D  +TE+   + +K  +PW ++D+M+EY
Sbjct: 236 PNFNIKGI-RFDLCLTEQQMKEAQKWNQPWLEFDMMREY 273

Homo sapiens (taxid: 9606)

>sp|Q9D338|RM19_MOUSE 39S ribosomal protein L19, mitochondrial OS=Mus musculus GN=Mrpl19 PE=2 SV=1

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 122/219 (55%), Gaps = 46/219 (21%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR V+ IP F+VGSIL VT+AD +   KT +F+GICI++   GL   F LRN +   
Sbjct: 99  MLDRRKVLPIPEFYVGSILRVTTADPYASGKTSQFLGICIKRSGNGLGATFTLRNTI--- 155

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                   +  G+EI +++Y+P I  I 
Sbjct: 156 ----------------------------------------EGQGVEICFELYNPRIQEIQ 175

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           V++LEKRLDD+LLYLRDALP+YSTF  +M+P        VP+N +KVK+KP+PW  RWER
Sbjct: 176 VVKLEKRLDDNLLYLRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWER 235

Query: 181 KGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
             +  KGI   D  +TE+   + +K  +PW ++D+M+EY
Sbjct: 236 PNFNIKGI-RFDLALTEEQMKEAQKWNKPWIEFDMMREY 273

Mus musculus (taxid: 10090)

>sp|A0RPR5|RL19_CAMFF 50S ribosomal protein L19 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rplS PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 9   DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNV-VDNLGIEIAY 66
            +P F  G  L +    K  D  + + F GICI +R  G    F++R +  +++G+E  +
Sbjct: 18  SVPDFRAGDTLRIAIRIKEGDKTRVQNFEGICIARRGSGSGETFIIRKIGANSVGVERIF 77

Query: 67  DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
            +Y  ++ +ITVLR  +     L YLRD
Sbjct: 78  PIYSESLESITVLRRGRIRRSKLFYLRD 105

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Campylobacter fetus subsp. fetus (strain 82-40) (taxid: 360106)

>sp|A7GZB0|RL19_CAMC5 50S ribosomal protein L19 OS=Campylobacter curvus (strain 525.92) GN=rplS PE=3 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 9   DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNV-VDNLGIEIA 65
            +P F  G  L V +   H+ +KTR   F GICI +R  G+   F++R +  +++G+E  
Sbjct: 18  SVPDFRAGDTLRV-AIRIHEGDKTRVQNFEGICIARRGSGVGETFIIRKIGANSVGVERI 76

Query: 66  YDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
           + +Y  +I  I VLR  +     L YLRD
Sbjct: 77  FPIYSDSIEEIVVLRKGRVRRAKLFYLRD 105

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Campylobacter curvus (strain 525.92) (taxid: 360105)

>sp|Q7MA03|RL19_WOLSU 50S ribosomal protein L19 OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=rplS PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 9   DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNV-VDNLGIEIAY 66
           +IP F  G  L V     + D  + + F GICI  R  G    F +R +  +N+G+E  +
Sbjct: 18  NIPQFKAGDTLRVGVKIQEGDKTRVQNFEGICISVRGTGTGKTFTIRKMGANNVGVERIF 77

Query: 67  DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
            LY  ++ ++T+LR+ +     L YLRD
Sbjct: 78  PLYSDSLESVTLLRVGRVRRAKLYYLRD 105

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Wolinella succinogenes (taxid: 844)

>sp|Q8EWU9|RL19_MYCPE 50S ribosomal protein L19 OS=Mycoplasma penetrans (strain HF-2) GN=rplS PE=3 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 9   DIPSFFVG-SILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
           DIP F  G +I+      +++ ++ +KF G+ I++R  GL    ++R     +G+E  + 
Sbjct: 23  DIPEFRSGDTIIVHNKIIENNKSRIQKFEGVVIRRRGSGLSETIIVRKESSGIGVERIFQ 82

Query: 68  LYDPTIHNITVLRLEKRLDDDLLYLRD 94
           L+ P I  I V+RL K     L YLR+
Sbjct: 83  LHSPQIEKIEVIRLGKVRRAYLTYLRE 109

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Mycoplasma penetrans (strain HF-2) (taxid: 272633)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
58396608	310	AGAP001139-PA [Anopheles gambiae str. PE	0.834	0.7	0.5	1e-70
157105510	318	39S ribosomal protein L19, mitochondrial	0.826	0.676	0.515	2e-70
312385920	386	hypothetical protein AND_00165 [Anophele	0.826	0.556	0.496	9e-70
255710073	223	mitochondrial 39S ribosomal protein L19	0.834	0.973	0.5	4e-69
195157386	319	GL12468 [Drosophila persimilis] gi|19411	0.834	0.680	0.488	2e-68
170070812	311	39S ribosomal protein L19, mitochondrial	0.834	0.697	0.5	2e-68
198454984	319	GA20783 [Drosophila pseudoobscura pseudo	0.834	0.680	0.488	4e-68
170055146	311	39S ribosomal protein L19, mitochondrial	0.834	0.697	0.496	4e-68
357625940	304	hypothetical protein KGM_08549 [Danaus p	0.823	0.703	0.494	7e-68
194743514	313	GF18180 [Drosophila ananassae] gi|190627	0.834	0.693	0.480	4e-67

>gi|58396608|ref|XP_322023.2| AGAP001139-PA [Anopheles gambiae str. PEST] gi|55234194|gb|EAA01492.2| AGAP001139-PA [Anopheles gambiae str. PEST]

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/260 (50%), Positives = 173/260 (66%), Gaps = 43/260 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR+ IDIP F+VGS+++VTS+D H  NKT +FVGICI +  CGLR  F+LRN     
Sbjct: 94  MLDRRANIDIPEFYVGSVVAVTSSDPHAENKTARFVGICILREKCGLRARFILRN----- 148

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 V+D+ GIEI+YD+YDPT+  I 
Sbjct: 149 --------------------------------------VIDHQGIEISYDLYDPTLQKIE 170

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLDD+LLYLRDAL +YSTF  +MEPE L +G+PVP+ND+KV LKPRPW  RWER
Sbjct: 171 VLRLEKRLDDNLLYLRDALDEYSTFDVNMEPEILPEGSPVPVNDVKVVLKPRPWYARWER 230

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
              +G+ ++++H  E+ + + + +  PWEKYDLMKEYRR+IPEEEQ+EIF+E++S+LH L
Sbjct: 231 HNLQGVANIEEHTNERRRRKAEAVATPWEKYDLMKEYRRSIPEEEQKEIFTEIYSQLHSL 290

Query: 241 SLSNKKLKKSRVYVKPKKTG 260
            L+ KK+K+ R +VKP K  
Sbjct: 291 ELARKKMKRKRTFVKPTKLA 310

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105510|ref|XP_001648902.1| 39S ribosomal protein L19, mitochondrial precursor [Aedes aegypti] gi|108880086|gb|EAT44311.1| AAEL004306-PA [Aedes aegypti]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/258 (51%), Positives = 172/258 (66%), Gaps = 43/258 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RRS IDIP F+VGS+++VTS+D H   KT +F+GICI K  CGLR  F+LRN     
Sbjct: 102 MLDRRSNIDIPEFYVGSVVAVTSSDVHAVGKTSRFLGICILKEKCGLRARFILRN----- 156

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 VVDN G+E++YDMYDPT+  + 
Sbjct: 157 --------------------------------------VVDNQGMEVSYDMYDPTLLKVE 178

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLDD LLYLRDAL +YSTF  +ME E L +GAPVP+NDIKV LKPRPW  RWER
Sbjct: 179 VLRLEKRLDDHLLYLRDALDEYSTFDLNMESEILPEGAPVPVNDIKVTLKPRPWFARWER 238

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
              +G+ ++++H  EK + + +++  PWEKYDLMKEYR++IPEEEQ+EIF+EV+S+LHQL
Sbjct: 239 HELQGVANIEEHTNEKKRRKAERVATPWEKYDLMKEYRKSIPEEEQKEIFAEVYSQLHQL 298

Query: 241 SLSNKKLKKSRVYVKPKK 258
            L+ KK+K+ R +VKP K
Sbjct: 299 ELTRKKMKRKRTFVKPTK 316

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385920|gb|EFR30308.1| hypothetical protein AND_00165 [Anopheles darlingi]

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 128/258 (49%), Positives = 169/258 (65%), Gaps = 43/258 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M++RR+ IDIP F+VGS+L+VTS+D+H  NKT +FVGICI +   GLRH F+LRN     
Sbjct: 170 MLERRANIDIPEFYVGSVLAVTSSDQHAENKTARFVGICILREKAGLRHRFILRN----- 224

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 V+D+  IE++YD+YDPT+H I 
Sbjct: 225 --------------------------------------VIDHQAIEVSYDLYDPTVHKIE 246

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLDD L+YLRDAL +YSTF  +MEPE L +G PVP+ND+KV LKP PW  RWER
Sbjct: 247 VLRLEKRLDDHLIYLRDALDEYSTFDINMEPEILPEGTPVPVNDVKVVLKPHPWYARWER 306

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
              +G+ ++++H  E+ + +   +  PWEKYDLMKEYRR+IPEEEQ+EIF+E++S LH L
Sbjct: 307 HNLQGVANIEEHTNERRRRKAALVATPWEKYDLMKEYRRSIPEEEQKEIFTEIYSTLHSL 366

Query: 241 SLSNKKLKKSRVYVKPKK 258
            L  KK+K+ R +VKP K
Sbjct: 367 ELQRKKMKRKRTFVKPTK 384

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255710073|gb|ACU30856.1| mitochondrial 39S ribosomal protein L19 precursor [Ochlerotatus triseriatus]

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 130/260 (50%), Positives = 171/260 (65%), Gaps = 43/260 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR+ IDIP F+VGS+ +VTS+D H   KT +FVGICI K  CG+R +F+LRN     
Sbjct: 7   MLDRRANIDIPEFYVGSVPAVTSSDVHAVGKTSRFVGICILKEKCGMRTKFILRN----- 61

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 VVDN G+E+ YDMYDPT+  + 
Sbjct: 62  --------------------------------------VVDNQGMEVLYDMYDPTLLKVE 83

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLD+ LLYLRDA  +YSTF  +MEPE L +GAPVP+ND+KV LKPRPW  RWER
Sbjct: 84  VLRLEKRLDEHLLYLRDAQDEYSTFDLNMEPEILPEGAPVPVNDVKVTLKPRPWYARWER 143

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
              +G+ ++D+H  +K + + ++L  PWEKYDLMKEYR++IPEEEQ+EIF+EV+S+LHQL
Sbjct: 144 HELQGVANIDEHTNDKKRRKAERLATPWEKYDLMKEYRKSIPEEEQKEIFAEVYSQLHQL 203

Query: 241 SLSNKKLKKSRVYVKPKKTG 260
            ++ KK+K+ R +VKP K  
Sbjct: 204 EMTRKKMKRKRTFVKPTKLA 223

Source: Ochlerotatus triseriatus

Species: Ochlerotatus triseriatus

Genus: Ochlerotatus

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195157386|ref|XP_002019577.1| GL12468 [Drosophila persimilis] gi|194116168|gb|EDW38211.1| GL12468 [Drosophila persimilis]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 172/260 (66%), Gaps = 43/260 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR  ID+P F+VGSI++VTS+D H   KT +FVGICI +  CGLR  FVLRN     
Sbjct: 103 MLDRRRQIDLPEFYVGSIMAVTSSDPHAAGKTSRFVGICINRDRCGLRARFVLRN----- 157

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 V+D+ G+E+ Y++YDPTI  + 
Sbjct: 158 --------------------------------------VIDHQGMEVVYELYDPTIQKVE 179

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLDD+L YLRDALP++STF  +ME E+L +GAPVP+NDIKV L+PRPW+ RWER
Sbjct: 180 VLRLEKRLDDNLFYLRDALPEFSTFDENMEAEHLEEGAPVPVNDIKVVLRPRPWLERWER 239

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
           +  +G+ ++DQ+I +K +   +K+++PWEKYDLMK+YR TIPEEEQ+E+F+EV +ELH L
Sbjct: 240 QNLRGVANIDQYIKDKHRKSAEKVQKPWEKYDLMKQYRSTIPEEEQKEVFAEVHTELHSL 299

Query: 241 SLSNKKLKKSRVYVKPKKTG 260
            L  K+ K+ R +VKPK+  
Sbjct: 300 ELQRKRNKRKRTFVKPKQLA 319

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170070812|ref|XP_001869719.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus] gi|167866729|gb|EDS30112.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/260 (50%), Positives = 167/260 (64%), Gaps = 43/260 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR+ IDIP F+VGS+++VT +D H   KT +F+GICI +  CGLR  F+LRN     
Sbjct: 95  MLDRRANIDIPEFYVGSVVAVTCSDVHAVGKTSRFLGICILREKCGLRARFILRN----- 149

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 VVDN GIE+ YDMYDPT+  + 
Sbjct: 150 --------------------------------------VVDNQGIEVMYDMYDPTLLKVE 171

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLD+ LLYLRDAL +YSTF  +ME E L +GAPVP+ND+KV LKPRPW  RWER
Sbjct: 172 VLRLEKRLDEHLLYLRDALDEYSTFDLNMEAEILPEGAPVPVNDVKVTLKPRPWYARWER 231

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
               G+ +VD+H  EK   +  ++  PWE++DLMK+YRRTIP+EEQ+EIF+EV+S+LHQL
Sbjct: 232 HNLAGVANVDEHTNEKKARKAARVATPWERFDLMKQYRRTIPDEEQKEIFAEVYSQLHQL 291

Query: 241 SLSNKKLKKSRVYVKPKKTG 260
            L+ KKLK+ R +VKP K  
Sbjct: 292 ELTRKKLKRKRTFVKPTKLA 311

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198454984|ref|XP_001359806.2| GA20783 [Drosophila pseudoobscura pseudoobscura] gi|198133043|gb|EAL28958.2| GA20783 [Drosophila pseudoobscura pseudoobscura]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 172/260 (66%), Gaps = 43/260 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR  ID+P F+VGSI++VTS+D H   KT +FVGICI +  CGLR  FVLRN     
Sbjct: 103 MLDRRRQIDLPEFYVGSIMAVTSSDPHAAGKTSRFVGICINRDRCGLRARFVLRN----- 157

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 V+D+ G+E+ Y++YDPTI  + 
Sbjct: 158 --------------------------------------VIDHQGMEVVYELYDPTIQKVE 179

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLDD+L YLRDALP++STF  +ME E+L +GAPVP+NDIKV L+PRPW+ RWER
Sbjct: 180 VLRLEKRLDDNLFYLRDALPEFSTFDENMEAEHLEEGAPVPVNDIKVILRPRPWLERWER 239

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
           +  +G+ ++DQ+I +K +   +K+++PWEKYDLMK+YR TIPEEEQ+E+F+EV +ELH L
Sbjct: 240 QNLRGVANIDQYIKDKHRKSAEKVQKPWEKYDLMKQYRSTIPEEEQKEVFAEVHTELHSL 299

Query: 241 SLSNKKLKKSRVYVKPKKTG 260
            L  K+ K+ R +VKPK+  
Sbjct: 300 ELQRKRNKRKRTFVKPKQLA 319

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055146|ref|XP_001863451.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus] gi|167875195|gb|EDS38578.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 129/260 (49%), Positives = 167/260 (64%), Gaps = 43/260 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR+ IDIP F+VGS+++VT +D H   KT +F+GICI +  CGLR  F+LRN     
Sbjct: 95  MLDRRANIDIPEFYVGSVVAVTCSDVHAVGKTSRFLGICILREKCGLRARFILRN----- 149

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 VVDN G+E+ YDMYDPT+  + 
Sbjct: 150 --------------------------------------VVDNQGVEVMYDMYDPTLLKVE 171

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLD+ LLYLRDAL +YSTF  +ME E L +GAPVP+ND+KV LKPRPW  RWER
Sbjct: 172 VLRLEKRLDEHLLYLRDALDEYSTFDLNMEAEILPEGAPVPVNDVKVTLKPRPWYARWER 231

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
               G+ +VD+H  EK   +  ++  PWE++DLMK+YRRTIP+EEQ+EIF+EV+S+LHQL
Sbjct: 232 HNLAGVANVDEHTNEKKARKAARVATPWERFDLMKQYRRTIPDEEQKEIFAEVYSQLHQL 291

Query: 241 SLSNKKLKKSRVYVKPKKTG 260
            L+ KKLK+ R +VKP K  
Sbjct: 292 ELTRKKLKRKRTFVKPTKLA 311

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625940|gb|EHJ76212.1| hypothetical protein KGM_08549 [Danaus plexippus]

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 127/257 (49%), Positives = 172/257 (66%), Gaps = 43/257 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+KRRS +DIP F+VG+IL+VT +D H   KT KFVGICI+++ CGLR EF LRN     
Sbjct: 87  MLKRRSQVDIPEFYVGTILAVTISDPHAQGKTNKFVGICIERKGCGLRAEFTLRN----- 141

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 V+D+ GIE+ YD+YDPTI NI 
Sbjct: 142 --------------------------------------VIDHQGIEVRYDLYDPTIQNIQ 163

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLDD LLYLRDALP+Y TFP DM+PE L +G+PVP+N ++VKLKPRPW+ RWER
Sbjct: 164 VLRLEKRLDDKLLYLRDALPEYCTFPIDMDPEILPEGSPVPVNTVQVKLKPRPWLERWER 223

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
           +  KG+ ++++H+ EK + +++  + PWEK+DLMK+YR+TIP E+Q EI+ EV+++L Q+
Sbjct: 224 QELKGVSNIEEHLKEKDRVRRELRKTPWEKFDLMKDYRKTIPIEDQAEIWGEVYNQLQQM 283

Query: 241 SLSNKKLKKSRVYVKPK 257
            +S KK+ K R +  PK
Sbjct: 284 RVSRKKMSKQRTFTAPK 300

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743514|ref|XP_001954245.1| GF18180 [Drosophila ananassae] gi|190627282|gb|EDV42806.1| GF18180 [Drosophila ananassae]

 Score =  260 bits (665), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 125/260 (48%), Positives = 168/260 (64%), Gaps = 43/260 (16%)

Query: 1   MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           M+ RR  ID+P F+VGSI++VTS+D H   K  +FVGICI +  CGLR  F+LRN     
Sbjct: 97  MLDRRRQIDLPEFYVGSIMAVTSSDPHAEGKVSRFVGICIHRDRCGLRARFILRN----- 151

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNIT 120
                                                 V+D+ GIE+ Y++YDPTI  + 
Sbjct: 152 --------------------------------------VIDHQGIEVIYELYDPTIQKVE 173

Query: 121 VLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWER 180
           VLRLEKRLDD L YLRDALP+YSTF  +ME E L +GAPVP+NDIKV L+PRPW+ RWER
Sbjct: 174 VLRLEKRLDDSLFYLRDALPEYSTFDENMEAEQLEEGAPVPVNDIKVVLRPRPWLERWER 233

Query: 181 KGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQL 240
           +  +G+ ++DQ++ +K +   +++++PWEKYDLMK+YR TIPEEEQ EIF+EV++ELH  
Sbjct: 234 QNLRGVANIDQYLKDKHRQSARRVQKPWEKYDLMKQYRATIPEEEQNEIFAEVYAELHAQ 293

Query: 241 SLSNKKLKKSRVYVKPKKTG 260
            L  K+ K+ R +VKPK+  
Sbjct: 294 ELQRKRNKRKRTFVKPKQLA 313

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
FB|FBgn0037608	306	mRpL19 "mitochondrial ribosoma	0.619	0.526	0.391	9.8e-32
WB|WBGene00022470	288	mrpl-19 [Caenorhabditis elegan	0.465	0.420	0.385	8e-21
ZFIN|ZDB-GENE-040801-55	291	mrpl19 "mitochondrial ribosoma	0.457	0.408	0.385	8e-21
UNIPROTKB|F1NEW6	253	MRPL19 "Uncharacterized protei	0.457	0.470	0.35	5.7e-20
RGD|1587381	292	Mrpl19 "mitochondrial ribosoma	0.457	0.407	0.368	1.2e-19
UNIPROTKB|P49406	292	MRPL19 "39S ribosomal protein	0.457	0.407	0.352	3.1e-19
UNIPROTKB|F1MMM8	292	MRPL19 "39S ribosomal protein	0.457	0.407	0.360	1.4e-18
UNIPROTKB|Q2HJI0	292	MRPL19 "39S ribosomal protein	0.457	0.407	0.360	1.4e-18
UNIPROTKB|I3LNJ0	292	MRPL19 "Uncharacterized protei	0.457	0.407	0.352	4.6e-18
MGI|MGI:1926274	292	Mrpl19 "mitochondrial ribosoma	0.457	0.407	0.352	7.5e-18

FB|FBgn0037608 mRpL19 "mitochondrial ribosomal protein L19" [Drosophila melanogaster (taxid:7227)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 63/161 (39%), Positives = 94/161 (58%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             NV+D+ G+E+ Y++YDPTI  I V                  P+YSTF  +ME E L +G
Sbjct:   144 NVIDHQGMEVVYELYDPTILKIEVLRLEKRLDDSLFYLRDALPEYSTFDENMEAEPLEEG 203

Query:   158 APVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
             APVP+NDIKV L+PRPW+ RWER+  +G+ ++D+++ +K +    K+++PWEKYD+MK+Y
Sbjct:   204 APVPVNDIKVVLRPRPWLERWERQNLRGVANIDEYLKDKHRLSAAKVQKPWEKYDMMKDY 263

Query:   218 RRTIPXXXXXXXXXXXXXXLHQXXXXXXXXXXXRVYVKPKK 258
             R +IP              LH            R ++KPK+
Sbjct:   264 RSSIPEEEQTEIFAEVHTELHALELQRKRNKRKRTFIKPKQ 304

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

WB|WBGene00022470 mrpl-19 [Caenorhabditis elegans (taxid:6239)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 47/122 (38%), Positives = 66/122 (54%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             N ++N+G+E+ YD+Y+PTI  I                    P+YSTF F MEP+    G
Sbjct:   127 NTIENIGVEVVYDLYNPTIKKIETLKLEKRLDNDLSYLVDALPEYSTFDFHMEPQAHPAG 186

Query:   158 APVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQ-KKKLEEPWEKYDLMKE 216
              P+P+N+ KVKLK  PW  RWE    +GI+D     T   K +  K +   +EKYDL+ +
Sbjct:   187 TPIPVNECKVKLKTPPWTRRWEVASVRGIEDTWTQATPWFKRKLHKTIVNDYEKYDLIAD 246

Query:   217 YR 218
             YR
Sbjct:   247 YR 248

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

ZFIN|ZDB-GENE-040801-55 mrpl19 "mitochondrial ribosomal protein L19" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 47/122 (38%), Positives = 68/122 (55%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             NV+D  G+EI Y++Y P +  I V                  P+YSTF FDM+P +    
Sbjct:   152 NVIDGQGVEICYELYSPRMRKIEVLKLEKRLDDNLMYLRDALPEYSTFDFDMQPVHYELT 211

Query:   158 APVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMK 215
               +P+N +KVK+KP+PW  RWER  +  KGI   D ++T +     +K  EPW +YD++K
Sbjct:   212 KDIPVNPLKVKMKPKPWSKRWERPKFDIKGIR-FDLYLTPEQMEHAQKWGEPWREYDMLK 270

Query:   216 EY 217
             EY
Sbjct:   271 EY 272

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|F1NEW6 MRPL19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 42/120 (35%), Positives = 69/120 (57%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             NV+++ G+EI Y++Y P I  ITV                  P+YSTF  +M+P   LD 
Sbjct:   116 NVIEDQGVEICYELYSPRIQEITVLKLEKRLDDNLTYLRDALPEYSTFDMNMKPVSHLDH 175

Query:   158 APVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 217
               +P+N ++V++KP+PW  RWER  Y  I  +   + EK   + +K ++PW ++D+++EY
Sbjct:   176 EEIPVNKLQVRMKPKPWSKRWERPKYN-IKGIKFELPEKKMKEAQKWKQPWLEFDMLREY 234

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

RGD|1587381 Mrpl19 "mitochondrial ribosomal protein L19" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 45/122 (36%), Positives = 69/122 (56%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             N ++  G+EI +++Y+P IH I V                  P+YSTF  +M+P  L   
Sbjct:   153 NTIEGQGVEICFELYNPRIHEIQVVKLEKRLDDSLLYLRDALPEYSTFDVNMKPVPLESC 212

Query:   158 APVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMK 215
               VP+N +KVK+KP+PW  RWER  +  KGI   D  +TE+   + +K  +PW ++D+M+
Sbjct:   213 QEVPVNKLKVKMKPKPWSKRWERPNFNIKGIR-FDLALTEEQMKEAQKWSKPWLEFDMMR 271

Query:   216 EY 217
             EY
Sbjct:   272 EY 273

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

UNIPROTKB|P49406 MRPL19 "39S ribosomal protein L19, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 43/122 (35%), Positives = 69/122 (56%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             NV++  G+EI +++Y+P +  I V                  P+YSTF  +M+P      
Sbjct:   153 NVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVNMKPVVQEPN 212

Query:   158 APVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMK 215
               VP+N++KVK+KP+PW  RWER  +  KGI   D  +TE+   + +K  +PW ++D+M+
Sbjct:   213 QKVPVNELKVKMKPKPWSKRWERPNFNIKGIR-FDLCLTEQQMKEAQKWNQPWLEFDMMR 271

Query:   216 EY 217
             EY
Sbjct:   272 EY 273

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

UNIPROTKB|F1MMM8 MRPL19 "39S ribosomal protein L19, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/122 (36%), Positives = 67/122 (54%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             N ++  G+EI +++Y+P I  I V                  P+YSTF  +M+P      
Sbjct:   153 NTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDSLLYLRDALPEYSTFDMNMKPVAQEPS 212

Query:   158 APVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMK 215
               VPIN +KVK+KP+PW  RWER  +  KGI   D  +TE+   + +K  +PW ++D+M+
Sbjct:   213 REVPINQLKVKMKPKPWSKRWERPKFNVKGIR-FDLCLTEEQMKEAQKWSQPWLEFDMMR 271

Query:   216 EY 217
             EY
Sbjct:   272 EY 273

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q2HJI0 MRPL19 "39S ribosomal protein L19, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/122 (36%), Positives = 67/122 (54%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             N ++  G+EI +++Y+P I  I V                  P+YSTF  +M+P      
Sbjct:   153 NTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDSLLYLRDALPEYSTFDMNMKPVAQEPS 212

Query:   158 APVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMK 215
               VPIN +KVK+KP+PW  RWER  +  KGI   D  +TE+   + +K  +PW ++D+M+
Sbjct:   213 REVPINQLKVKMKPKPWSKRWERPKFNVKGIR-FDLCLTEEQMKEAQKWSQPWLEFDMMR 271

Query:   216 EY 217
             EY
Sbjct:   272 EY 273

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|I3LNJ0 MRPL19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 43/122 (35%), Positives = 67/122 (54%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             N ++  G+EI +++Y+P I  I V                  P+YSTF  +M+P      
Sbjct:   153 NTIEGQGVEICFELYNPRIQEIQVVKLEKRLDNSLLYLRDALPEYSTFDVNMKPITQEFN 212

Query:   158 APVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMK 215
               VP+N +KVK+KP+PW  RWER  +  KGI   D  +TE+   + +K  +PW ++D+M+
Sbjct:   213 QEVPVNQLKVKMKPKPWSKRWERPKFNIKGIR-FDLCLTEEQMREAQKWSQPWLEFDMMR 271

Query:   216 EY 217
             EY
Sbjct:   272 EY 273

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1926274 Mrpl19 "mitochondrial ribosomal protein L19" [Mus musculus (taxid:10090)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 43/122 (35%), Positives = 67/122 (54%)

Query:    98 NVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDG 157
             N ++  G+EI +++Y+P I  I V                  P+YSTF  +M+P      
Sbjct:   153 NTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDNLLYLRDALPEYSTFDVNMKPVPQEAC 212

Query:   158 APVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMK 215
               VP+N +KVK+KP+PW  RWER  +  KGI   D  +TE+   + +K  +PW ++D+M+
Sbjct:   213 QEVPVNKLKVKMKPKPWSKRWERPNFNIKGIR-FDLALTEEQMKEAQKWNKPWIEFDMMR 271

Query:   216 EY 217
             EY
Sbjct:   272 EY 273

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031965 "nuclear membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VHN6	RM19_DROME	No assigned EC number	0.4769	0.8346	0.7091	yes	N/A
Q95Y83	RM19_CAEEL	No assigned EC number	0.3783	0.8153	0.7361	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	260
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	2e-13
COG0335	115	COG0335, RplS, Ribosomal protein L19 [Translation,	3e-08
TIGR01024	113	TIGR01024, rplS_bact, ribosomal protein L19, bacte	1e-06
PRK05338	116	PRK05338, rplS, 50S ribosomal protein L19; Provisi	1e-04
CHL00084	117	CHL00084, rpl19, ribosomal protein L19	0.004

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score = 64.8 bits (159), Expect = 2e-13
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 9   DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAY 66
           D+P F VG  + V    K + NK R   F G+ I KR  GL   F +R +   +G+E  +
Sbjct: 15  DLPEFRVGDTVKVHVKIK-EGNKERIQVFEGVVIAKRGRGLNSTFTVRKISQGVGVERVF 73

Query: 67  DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
            L+ P I  I V+R  K     L YLRD
Sbjct: 74  PLHSPRIDKIEVVRRGKVRRAKLYYLRD 101

Length = 113

>gnl|CDD|223412 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 9   DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAY 66
           DIPSF  G  + V      + +K R   F G+ I +R  G+   F +R +   +G+E  +
Sbjct: 17  DIPSFRPGDTVRVHVKIV-EGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVF 75

Query: 67  DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
            L+ P I +I V+R  K     L YLR+
Sbjct: 76  PLHSPLIESIEVVRRGKVRRAKLYYLRE 103

Length = 115

>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 9   DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAY 66
           D+P F VG  + V      +  K R   F G+ I +R  G+   F +R +   +G+E  +
Sbjct: 15  DLPDFRVGDTVRVHVKIV-EGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIF 73

Query: 67  DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
            L+ P I +I V+R  K     L YLR+
Sbjct: 74  PLHSPNIDSIEVVRRGKVRRAKLYYLRE 101

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|235418 PRK05338, rplS, 50S ribosomal protein L19; Provisional

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 11/78 (14%)

Query: 9  DIPSFFVGSILSVTSADKH----DPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGI 62
          DIP F  G  + V     H    + NK R   F G+ I +R  GL   F +R +   +G+
Sbjct: 15 DIPEFRPGDTVRV-----HVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGV 69

Query: 63 EIAYDLYDPTIHNITVLR 80
          E  + L+ P I +I V+R
Sbjct: 70 ERTFPLHSPRIDSIEVVR 87

Length = 116

>gnl|CDD|177023 CHL00084, rpl19, ribosomal protein L19

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 8   IDIPSFFVGSI----LSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIE 63
            ++P   VG      + +   +K    + + + G  I K+  GL     +R V   +G+E
Sbjct: 18  KNLPKIRVGDTVKVGVLIQEGNK---ERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVE 74

Query: 64  IAYDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
             + L+ P + +I VLR  K     L YLR+
Sbjct: 75  RVFLLHSPKLASIEVLRRSKVRRAKLYYLRN 105

Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
CHL00084	117	rpl19 ribosomal protein L19	100.0
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	100.0
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	100.0
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	100.0
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	100.0
KOG1698|consensus	201		100.0
KOG1698|consensus	201		98.23
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	98.03
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	97.92
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	97.73
CHL00084	117	rpl19 ribosomal protein L19	97.64
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	96.77

>CHL00084 rpl19 ribosomal protein L19

Probab=100.00  E-value=4.8e-39  Score=263.35  Aligned_cols=93  Identities=26%  Similarity=0.442  Sum_probs=91.0

Q ss_pred             cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657          6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR   84 (260)
Q Consensus         6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV   84 (260)
                      .+.++|+|+|||+|+|++.+.| +|+|+|.|+|+||+++++|+++||||||+++|+|||++||+|||.|++|+|+++|++
T Consensus        16 ~~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkv   95 (117)
T CHL00084         16 LKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLLHSPKLASIEVLRRSKV   95 (117)
T ss_pred             hhcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEecCCCccceEEEEEeCcc
Confidence            3578999999999999999998 899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceehhhccCcc
Q psy12657         85 LDDDLLYLRDALPN   98 (260)
Q Consensus        85 RRAKLYYLRdr~gK   98 (260)
                      |||||||||++.||
T Consensus        96 RRAKLyYLR~~~gK  109 (117)
T CHL00084         96 RRAKLYYLRNRVGK  109 (117)
T ss_pred             chheeEEeccCcCh
Confidence            99999999999999

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=100.00  E-value=8.5e-39  Score=260.48  Aligned_cols=93  Identities=28%  Similarity=0.461  Sum_probs=91.2

Q ss_pred             cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657          6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR   84 (260)
Q Consensus         6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV   84 (260)
                      .+.++|+|+|||+|+|++.+.| +|+|+|.|+|+||+++++|+++||||||+++|+|||++||||||.|++|+|+++|++
T Consensus        12 ~~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl~SP~I~~IeVl~~~kv   91 (113)
T TIGR01024        12 LKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLHSPNIDSIEVVRRGKV   91 (113)
T ss_pred             hhcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEcCCCccceEEEEEeCcc
Confidence            3678999999999999999999 899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceehhhccCcc
Q psy12657         85 LDDDLLYLRDALPN   98 (260)
Q Consensus        85 RRAKLYYLRdr~gK   98 (260)
                      |||||||||++.||
T Consensus        92 rRaKLyYLR~~~gK  105 (113)
T TIGR01024        92 RRAKLYYLRERRGK  105 (113)
T ss_pred             chhheeeeccCcch
Confidence            99999999999999

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=100.00  E-value=7.5e-39  Score=261.82  Aligned_cols=92  Identities=29%  Similarity=0.479  Sum_probs=90.5

Q ss_pred             CCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeecccc
Q psy12657          7 VIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRL   85 (260)
Q Consensus         7 ~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKVR   85 (260)
                      +.++|+|+|||+|+|++.+.| +|+|+|.|+|+||+++++|+++||||||+++|+|||++||||||.|++|+|+++|++|
T Consensus        13 ~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvR   92 (116)
T PRK05338         13 RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLHSPRIDSIEVVRRGKVR   92 (116)
T ss_pred             hcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecCCCCcccEEEEEEecccc
Confidence            478999999999999999998 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceehhhccCcc
Q psy12657         86 DDDLLYLRDALPN   98 (260)
Q Consensus        86 RAKLYYLRdr~gK   98 (260)
                      ||||||||++.||
T Consensus        93 RAKLyYLR~~~gK  105 (116)
T PRK05338         93 RAKLYYLRELRGK  105 (116)
T ss_pred             hhheeeeccCcch
Confidence            9999999999999

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.4e-38  Score=258.47  Aligned_cols=95  Identities=36%  Similarity=0.574  Sum_probs=92.1

Q ss_pred             cccCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeec
Q psy12657          4 RRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLE   82 (260)
Q Consensus         4 Rr~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrg   82 (260)
                      ...+.++|+|+|||+|+|++.+.| +++|+|.|+|+||+++++|++|||||||+++|+|||++||||||.|++|+|++++
T Consensus        10 ~~~~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f~l~SP~I~~IeV~~~~   89 (113)
T PF01245_consen   10 EQIKKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVFPLYSPLIKSIEVLRRG   89 (113)
T ss_dssp             TTCSSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEEETTSTTEEEEEEEEEB
T ss_pred             HHhhcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEEEcCCCCeEEEEEEEec
Confidence            345689999999999999999997 8999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceehhhccCcc
Q psy12657         83 KRLDDDLLYLRDALPN   98 (260)
Q Consensus        83 KVRRAKLYYLRdr~gK   98 (260)
                      ++|||||||||++.||
T Consensus        90 kvrRaKLyYLR~~~gK  105 (113)
T PF01245_consen   90 KVRRAKLYYLRDRKGK  105 (113)
T ss_dssp             ECSSSSTGGGGCTTSH
T ss_pred             ccchhhhhhhhcCccc
Confidence            9999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-38  Score=258.23  Aligned_cols=93  Identities=29%  Similarity=0.459  Sum_probs=90.9

Q ss_pred             cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657          6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR   84 (260)
Q Consensus         6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV   84 (260)
                      ...++|+|+|||+|+|++.+.| +|+|+|.|+|+|||++|+|+++|||||++++|+|||++||+|||.|++|+|+++|+|
T Consensus        14 ~~~~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~Fp~~SP~Ie~IeV~rrGkV   93 (115)
T COG0335          14 IKKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVFPLHSPLIESIEVVRRGKV   93 (115)
T ss_pred             HHhhCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEeecCCCceeEEEEEecCce
Confidence            3567999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceehhhccCcc
Q psy12657         85 LDDDLLYLRDALPN   98 (260)
Q Consensus        85 RRAKLYYLRdr~gK   98 (260)
                      |||||||||++.||
T Consensus        94 RRAKLYYLR~~~GK  107 (115)
T COG0335          94 RRAKLYYLRERRGK  107 (115)
T ss_pred             eeeeeEeeeccccc
Confidence            99999999999999

>KOG1698|consensus

Probab=100.00  E-value=1.5e-37  Score=273.32  Aligned_cols=117  Identities=49%  Similarity=0.842  Sum_probs=110.4

Q ss_pred             CcccccCCCCCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEee
Q psy12657          1 MIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLR   80 (260)
Q Consensus         1 m~~Rr~~~diPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlr   80 (260)
                      |+.|+...++|+|+|||+|+|++.+++++.++..|.||||+++++|+++||+|||++.|+|||.+               
T Consensus        85 ~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~s~f~Gi~I~R~~~Gl~atf~LRnvIagvGVEi~---------------  149 (201)
T KOG1698|consen   85 VLERRKVRDIPEFKVGSIVRVTSEDPENKRKVSRFKGICIRRRNAGLNATFLLRNVIAGVGVEIV---------------  149 (201)
T ss_pred             HHHHHhcccCCccccccEEEEEecCCccCCceeEEEEEEEEecccCCcceEEeeehhhCceeEEE---------------
Confidence            67899999999999999999999999999999999999999999999999999999999999999               


Q ss_pred             eccccccceehhhccCcccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCCCCccCCCcccccCCCCCc
Q psy12657         81 LEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPV  160 (260)
Q Consensus        81 rgKVRRAKLYYLRdr~gK~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~~t~~~~m~p~~~~~~~~v  160 (260)
                                                  |++|||+|++|+||++||++|+.|.|||||+|+||||+++|+|..+++|++|
T Consensus       150 ----------------------------~pLYsP~IkeI~Vlk~~k~rra~LyYLRd~lp~lstfd~~m~~~~~~~~~~~  201 (201)
T KOG1698|consen  150 ----------------------------FPLYSPNIKEIKVLKLEKRRRAKLYYLRDALPELSTFDANMRPKKEENGHKV  201 (201)
T ss_pred             ----------------------------EeccCCCeeEEEEechhhcccchhhhhhccccccCchhhccccccccCCCCC
Confidence                                        5566667777888899999999999999999999999999999999999885

>KOG1698|consensus

Probab=98.23  E-value=4e-07  Score=81.39  Aligned_cols=37  Identities=51%  Similarity=0.899  Sum_probs=34.0

Q ss_pred             cCCccceEEEeeeccccccceehhhccCcccccccceeeEEeecCCC
Q psy12657         69 YDPTIHNITVLRLEKRLDDDLLYLRDALPNVVDNLGIEIAYDMYDPT  115 (260)
Q Consensus        69 ySP~I~sIeVlrrgKVRRAKLYYLRdr~gK~v~g~gv~iky~~y~p~  115 (260)
                      |||+|++|+|++..+++||+||||||..+.          |..|+-+
T Consensus       153 YsP~IkeI~Vlk~~k~rra~LyYLRd~lp~----------lstfd~~  189 (201)
T KOG1698|consen  153 YSPNIKEIKVLKLEKRRRAKLYYLRDALPE----------LSTFDAN  189 (201)
T ss_pred             cCCCeeEEEEechhhcccchhhhhhccccc----------cCchhhc
Confidence            899999999999999999999999999998          8777543

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.03  E-value=3.8e-06  Score=68.92  Aligned_cols=43  Identities=37%  Similarity=0.621  Sum_probs=40.5

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCC
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALP  140 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~  140 (260)
                      +++.|+|||..|.+|||.|++|+|++..+..+..|.||||+..
T Consensus        62 ~~~~g~gVE~~f~l~SP~I~~IeV~~~~kvrRaKLyYLR~~~g  104 (113)
T PF01245_consen   62 NISQGVGVERVFPLYSPLIKSIEVLRRGKVRRAKLYYLRDRKG  104 (113)
T ss_dssp             EEETTEEEEEEEETTSTTEEEEEEEEEBECSSSSTGGGGCTTS
T ss_pred             EEecCccEEEEEEcCCCCeEEEEEEEecccchhhhhhhhcCcc
Confidence            3689999999999999999999999999999999999999764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=97.92  E-value=5.4e-06  Score=68.39  Aligned_cols=43  Identities=28%  Similarity=0.470  Sum_probs=40.6

Q ss_pred             cccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCC
Q psy12657         99 VVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQ  141 (260)
Q Consensus        99 ~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~  141 (260)
                      ++.|.|+|..|.+|||.|++|+|++..|..+..|.||||+...
T Consensus        63 i~~gvGVEr~fpl~SP~I~~IeVl~~~kvrRaKLyYLR~~~gK  105 (113)
T TIGR01024        63 ISYGVGVERIFPLHSPNIDSIEVVRRGKVRRAKLYYLRERRGK  105 (113)
T ss_pred             eccCccEEEEEEcCCCccceEEEEEeCccchhheeeeccCcch
Confidence            5899999999999999999999999999999999999998654

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=97.73  E-value=1.5e-05  Score=66.04  Aligned_cols=44  Identities=27%  Similarity=0.443  Sum_probs=40.9

Q ss_pred             cccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCC
Q psy12657         99 VVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQY  142 (260)
Q Consensus        99 ~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~  142 (260)
                      ++.|.|+|-.|.+|||.|.+|+|++..|..+..|.||||+...-
T Consensus        63 i~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRAKLyYLR~~~gK~  106 (116)
T PRK05338         63 ISYGVGVERTFPLHSPRIDSIEVVRRGKVRRAKLYYLRELRGKA  106 (116)
T ss_pred             cccCccEEEEecCCCCcccEEEEEEecccchhheeeeccCcchh
Confidence            58899999999999999999999999999999999999976543

>CHL00084 rpl19 ribosomal protein L19

Probab=97.64  E-value=2.7e-05  Score=64.65  Aligned_cols=44  Identities=30%  Similarity=0.523  Sum_probs=40.9

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCC
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQ  141 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~  141 (260)
                      +++.|.|+|-.|.+|||.|.+|+|++..|.-+..|.||||+...
T Consensus        66 ki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRAKLyYLR~~~gK  109 (117)
T CHL00084         66 KVFQGIGVERVFLLHSPKLASIEVLRRSKVRRAKLYYLRNRVGK  109 (117)
T ss_pred             EeccCccEEEEEecCCCccceEEEEEeCccchheeEEeccCcCh
Confidence            35899999999999999999999999999999999999998654

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.00066  Score=56.58  Aligned_cols=41  Identities=29%  Similarity=0.511  Sum_probs=38.9

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhh
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDA  138 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda  138 (260)
                      |++.|.|+|..|.+|||.|.+|+|++-=|--...|.|||+.
T Consensus        64 kis~G~GVEr~Fp~~SP~Ie~IeV~rrGkVRRAKLYYLR~~  104 (115)
T COG0335          64 KISYGVGVERVFPLHSPLIESIEVVRRGKVRRAKLYYLRER  104 (115)
T ss_pred             EeecCceEEEEeecCCCceeEEEEEecCceeeeeeEeeecc
Confidence            57999999999999999999999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	260
2ftc_K	98	Structural Model For The Large Subunit Of The Mamma		7e-15

>pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 98

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 48/69 (69%)
Query: 10 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLY 69
          IP F+VGSIL VT+AD +   K  +F+GICIQ+   GL   F+LRNV++  G+EI ++LY
Sbjct: 1  IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELY 60
Query: 70 DPTIHNITV 78
          +P +  I V
Sbjct: 61 NPRVQEIQV 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	6e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	2e-07
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	7e-06
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	1e-05
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	2e-05

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score =  101 bits (255), Expect = 6e-28
 Identities = 50/88 (56%), Positives = 66/88 (75%)

Query: 10 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLY 69
          IP F+VGSIL VT+AD +   K  +F+GICIQ+   GL   F+LRNV++  G+EI ++LY
Sbjct: 1  IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELY 60

Query: 70 DPTIHNITVLRLEKRLDDDLLYLRDALP 97
          +P +  I V++LEKRLDD LLYLRDALP
Sbjct: 61 NPRVQEIQVVKLEKRLDDSLLYLRDALP 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 44/206 (21%)

Query: 79  LRLEKRLDDDLLYLRD-ALPNVVD--NLG---------IEIAYDMYDPTIHNITVLRLEK 126
           L   K  ++ LL L +       +  NL           ++   +   T  +I++     
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 127 RLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGI 186
            L  D   ++  L +Y        P  +L   P  ++ I   ++       W+   +   
Sbjct: 297 TLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNC 352

Query: 187 DDVDQHITEKMKGQKKKLE--EPWEKYDLMKEYRR--------TIPE--------EEQEE 228
           D +   I       +  L   EP E   +   + R         IP         +  + 
Sbjct: 353 DKLTTII-------ESSLNVLEPAEYRKM---FDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 229 IFSEVFSELHQLSLSNKKLKKSRVYV 254
               V ++LH+ SL  K+ K+S + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 38/279 (13%), Positives = 82/279 (29%), Gaps = 80/279 (28%)

Query: 30  NKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHN-------ITVLRLE 82
              +KFV   ++  Y  L              +   Y      ++N         V RL+
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 83  K--RLDDDLLYLRDALPNVVDNLGIEIAYDMYDPTIHNI-----TVL--------RLEKR 127
              +L   LL LR A  NV+               I  +     T +        +++ +
Sbjct: 136 PYLKLRQALLELRPA-KNVL---------------IDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 128 LDDDLLYL--------RDALPQYSTFPFDMEPEY--LLDGA---PVPINDIKVKLKPRPW 174
           +D  + +L           L       + ++P +    D +    + I+ I+ +L+    
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---- 235

Query: 175 VGRWERKGYKG----IDDV-DQHITEKMKGQKK------------KLEEPWEKYDLMKEY 217
               + K Y+     + +V +           K             L      +  +  +
Sbjct: 236 -RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 218 RRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSRVYVKP 256
             T+  +E + +  +       L    + L +  +   P
Sbjct: 295 SMTLTPDEVKSLLLKY------LDCRPQDLPREVLTTNP 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 6e-05
 Identities = 44/293 (15%), Positives = 92/293 (31%), Gaps = 79/293 (26%)

Query: 2   IKRRSVIDIPSFFVGS-ILSVTSADKH--DPNKTRKFVGICIQKRYCGLRHEFVLRNVVD 58
           ++     +  +F +   IL +T+  K   D         I +      L  + V   ++ 
Sbjct: 253 VQNAKAWN--AFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 59  NLGIEIAYDLYDP----TIHNITVLRLEKRLDDDLL-------YLRDALPNVVDNLGIEI 107
            L      DL  P    T +   +  + + + D L           D L  +     IE 
Sbjct: 310 YLDCRPQ-DL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IES 361

Query: 108 AYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDME-PEYLL-----DGAPVP 161
           + ++ +P  +        +++ D L          S FP     P  LL     D     
Sbjct: 362 SLNVLEPAEY--------RKMFDRL----------SVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 162 INDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQK---KKLEEPWEKYDLMKEYR 218
           +  +  KL     V +  ++    I  +   +  K++ +    + +    + Y++ K + 
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI---VDHYNIPKTFD 460

Query: 219 ---------------------RTIPEEEQEEIFSEVFSELHQLSLSNKKLKKS 250
                                + I   E+  +F  VF +   L    +K++  
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIRHD 510

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 9   DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAY 66
            +P    G I+ +    +   NK R   + GI I ++  G+     +R ++  +G+EI +
Sbjct: 139 PVPGIRTGDIVQIRL--EVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVF 196

Query: 67  DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
            LY P I  I V+   K     L YLRD
Sbjct: 197 PLYSPNIKEIKVVSHRKVRKARLYYLRD 224

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 9   DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAY 66
           D+PSF  G  + V      + +K R   F G+ I  R  GL   F +R + +  G+E  +
Sbjct: 15  DVPSFRPGDTVEVKVWVV-EGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVF 73

Query: 67  DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
             + P + +I+V R        L YLR+
Sbjct: 74  QTHSPVVDSISVKRRGAVRKAKLYYLRE 101

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 2   IKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDN 59
           I++     +P F  G  + V +  + + N+TR   F G+ I     G R  F +R +   
Sbjct: 16  IEQDHTRQLPDFRPGDTVRVDTKVR-EGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFG 74

Query: 60  LGIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
            G+E  +    P ++ +T++   K     L YLR+
Sbjct: 75  EGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 109

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Length = 146

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 9   DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAY 66
           D+P F  G  + V+   K + N+TR   F GI I+ R  G    F +R V   +G+E  +
Sbjct: 18  DLPEFRPGDTVRVSYKVK-EGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIF 76

Query: 67  DLYDPTIHNITVLRLEKRLDDDLLYLRD 94
            L+ P I  I +++  +     L ++R+
Sbjct: 77  PLHSPLIQKIDIVQRGRARRAKLYFIRN 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	100.0
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	100.0
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	100.0
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	100.0
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	100.0
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	98.92
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	98.26
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	98.13
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	98.09
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	97.97
2vc8_A	84	Enhancer of mRNA-decapping protein 3; P-BODY compo	81.77

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=4.3e-44  Score=284.42  Aligned_cols=89  Identities=56%  Similarity=1.013  Sum_probs=86.2

Q ss_pred             CCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccccccce
Q psy12657         10 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKRLDDDL   89 (260)
Q Consensus        10 iPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKVRRAKL   89 (260)
                      +|+|+|||+|+|++.+.++++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++||+|||||
T Consensus         1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKL   80 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSL   80 (98)
T ss_pred             CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCcccceeE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ehhhccCcc
Q psy12657         90 LYLRDALPN   98 (260)
Q Consensus        90 YYLRdr~gK   98 (260)
                      ||||++.++
T Consensus        81 yYLR~~~~~   89 (98)
T 2ftc_K           81 LYLRDALPE   89 (98)
T ss_pred             EEeccCCcc
Confidence            998877555

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=100.00  E-value=1.6e-40  Score=270.08  Aligned_cols=93  Identities=26%  Similarity=0.420  Sum_probs=91.2

Q ss_pred             cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657          6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR   84 (260)
Q Consensus         6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV   84 (260)
                      .+.|+|+|+|||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++|++
T Consensus        12 ~~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkv   91 (114)
T 3r8s_P           12 MKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAV   91 (114)
T ss_dssp             CCSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECEEC
T ss_pred             hccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEEEEEcccc
Confidence            4679999999999999999998 899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceehhhccCcc
Q psy12657         85 LDDDLLYLRDALPN   98 (260)
Q Consensus        85 RRAKLYYLRdr~gK   98 (260)
                      |||||||||++.||
T Consensus        92 RRAKLyYLR~~~GK  105 (114)
T 3r8s_P           92 RKAKLYYLRERTGK  105 (114)
T ss_dssp             CSSCCGGGTTCCHH
T ss_pred             chhheeeecCCcch
Confidence            99999999999999

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=100.00  E-value=1.5e-39  Score=273.66  Aligned_cols=93  Identities=25%  Similarity=0.457  Sum_probs=91.2

Q ss_pred             cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657          6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR   84 (260)
Q Consensus         6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV   84 (260)
                      .+.|+|+|+|||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++|+|
T Consensus        15 ~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrrgkV   94 (146)
T 3v2d_T           15 VRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRA   94 (146)
T ss_dssp             CCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECEEC
T ss_pred             hhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecCCCccceEEEEecCcc
Confidence            4679999999999999999998 899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceehhhccCcc
Q psy12657         85 LDDDLLYLRDALPN   98 (260)
Q Consensus        85 RRAKLYYLRdr~gK   98 (260)
                      |||||||||++.||
T Consensus        95 RRAKLYYLR~~~GK  108 (146)
T 3v2d_T           95 RRAKLYFIRNLSDR  108 (146)
T ss_dssp             SSSCCGGGGGCCHH
T ss_pred             chhheeeccCCcch
Confidence            99999999999999

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=100.00  E-value=6.4e-40  Score=280.65  Aligned_cols=93  Identities=22%  Similarity=0.418  Sum_probs=87.3

Q ss_pred             cCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657          6 SVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR   84 (260)
Q Consensus         6 ~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV   84 (260)
                      ...++|+|+|||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++|+|
T Consensus        20 ~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FplhSP~I~kIEVvrrGKV   99 (166)
T 2zjr_M           20 HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFASPLVNQVTIVERGKV   99 (166)
T ss_dssp             GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECCCC
T ss_pred             cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecCCCccceEEEEecccc
Confidence            4589999999999999999998 899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceehhhccCcc
Q psy12657         85 LDDDLLYLRDALPN   98 (260)
Q Consensus        85 RRAKLYYLRdr~gK   98 (260)
                      |||||||||++.||
T Consensus       100 RRAKLYYLRd~~GK  113 (166)
T 2zjr_M          100 RRAKLYYLRELRGK  113 (166)
T ss_dssp             SSSCCGGGCC----
T ss_pred             chhheeeccCCCCc
Confidence            99999999999999

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.1e-38  Score=281.22  Aligned_cols=94  Identities=27%  Similarity=0.558  Sum_probs=91.8

Q ss_pred             ccCCCCCCcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeeccc
Q psy12657          5 RSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLEKR   84 (260)
Q Consensus         5 r~~~diPeF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrgKV   84 (260)
                      ..+.++|+|+|||||+|++.+.|+|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|+|+++|||
T Consensus       135 q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLhSP~I~kIEVvRrgKV  214 (233)
T 3bbo_R          135 EELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKV  214 (233)
T ss_dssp             TCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCBSSSSSCCCCCCCSCC
T ss_pred             hhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecCCCccceEEEEecccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceehhhccCcc
Q psy12657         85 LDDDLLYLRDALPN   98 (260)
Q Consensus        85 RRAKLYYLRdr~gK   98 (260)
                      |||||||||++.+.
T Consensus       215 RRAKLYYLRd~lp~  228 (233)
T 3bbo_R          215 RKARLYYLRDKLPR  228 (233)
T ss_dssp             CCSCSSCCCCSSTT
T ss_pred             chhhhhhhhcCCcc
Confidence            99999999999999

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=98.92  E-value=1.2e-10  Score=104.25  Aligned_cols=49  Identities=39%  Similarity=0.751  Sum_probs=47.8

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCCCCcc
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFP  146 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~~t~~  146 (260)
                      |++.|.|||..|.+|+|.|.+|+|++..|..+..|.||||++|+||||+
T Consensus       185 kis~GvGVER~FpLhSP~I~kIEVvRrgKVRRAKLYYLRd~lp~~STf~  233 (233)
T 3bbo_R          185 RIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK  233 (233)
T ss_dssp             CCCCCSTTTCCCCCBSSSSSCCCCCCCSCCCCSCSSCCCCSSTTCSSCC
T ss_pred             EecCCceEEEEEecCCCccceEEEEeccccchhhhhhhhcCCcccccCC
Confidence            5899999999999999999999999999999999999999999999996

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=98.26  E-value=2.4e-07  Score=73.65  Aligned_cols=53  Identities=57%  Similarity=1.103  Sum_probs=51.6

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCCCCccCCCc
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDME  150 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~~t~~~~m~  150 (260)
                      +++.|.|+|..|.+|||.|.+|+|++..|..+..|.||||++|+||||||||+
T Consensus        46 ki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKLyYLR~~~~~~st~~~~~~   98 (98)
T 2ftc_K           46 NVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVNMK   98 (98)
T ss_pred             EeccCceEEEEEecCCCceeEEEEEEcCcccceeEEEeccCCcccceeccccC
Confidence            47899999999999999999999999999999999999999999999999996

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=98.13  E-value=8.7e-07  Score=72.11  Aligned_cols=42  Identities=24%  Similarity=0.440  Sum_probs=39.9

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhC
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDAL  139 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~  139 (260)
                      +++.|.|||..|.+|||.|.+|+|++..|..+..|.||||+.
T Consensus        62 ki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRAKLyYLR~~~  103 (114)
T 3r8s_P           62 KISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERT  103 (114)
T ss_dssp             EEETTEEEEEEEETTCTTEEEEEEEECEECCSSCCGGGTTCC
T ss_pred             EecCCccEEEEEecCCCccceEEEEEccccchhheeeecCCc
Confidence            478999999999999999999999999999999999999964

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=98.09  E-value=1.2e-06  Score=73.92  Aligned_cols=42  Identities=19%  Similarity=0.423  Sum_probs=39.9

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhC
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDAL  139 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~  139 (260)
                      +++.|+|||..|.+|||.|.+|+|++..|..+..|.||||+.
T Consensus        65 kis~gvGVEr~Fpl~SP~I~~IeVvrrgkVRRAKLYYLR~~~  106 (146)
T 3v2d_T           65 KVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNLS  106 (146)
T ss_dssp             EEETTEEEEEEEETTCTTEEEEEEEECEECSSSCCGGGGGCC
T ss_pred             EecCCccEEEEEecCCCccceEEEEecCccchhheeeccCCc
Confidence            478999999999999999999999999999999999999864

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=97.97  E-value=2.1e-06  Score=73.80  Aligned_cols=49  Identities=18%  Similarity=0.329  Sum_probs=39.0

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCCCCcc
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFP  146 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~~t~~  146 (260)
                      +++.|.|||..|.+|||.|.+|+|++..|..+..|.||||+...-+.+.
T Consensus        70 kis~GvGVER~FplhSP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARIk  118 (166)
T 2zjr_M           70 KISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIK  118 (166)
T ss_dssp             EEETTEEEEEEEETTCTTEEEEEEEECCCCSSSCCGGGCC---------
T ss_pred             EecCCeeEEEEEecCCCccceEEEEeccccchhheeeccCCCCchhhee
Confidence            5799999999999999999999999999999999999999988766554

>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}

Probab=81.77  E-value=7.8  Score=30.00  Aligned_cols=57  Identities=19%  Similarity=0.371  Sum_probs=41.9

Q ss_pred             CCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCC-------ccceEEEeeec
Q psy12657         14 FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDP-------TIHNITVLRLE   82 (260)
Q Consensus        14 ~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP-------~I~sIeVlrrg   82 (260)
                      ..|+.|.+....     -+-.|+|.+..+..  .++|+||+|++ ..|+    +.+||       -|++++|++..
T Consensus         7 ~iGs~VSi~c~d-----~lGvYQG~i~~vd~--~~~tItL~~~f-~NG~----~~~s~eVtls~~DI~~L~ii~~~   70 (84)
T 2vc8_A            7 WLGSIVSINCGD-----SLGVYQGRVSAVDQ--VSQTISLTRPF-HNGV----KCLVPEVTFRAGDITELKILEIP   70 (84)
T ss_dssp             TTTCEEEEECCT-----TTCEEEEEEEEEET--TTTEEEEEEEE-ETTE----ECSSSEEEEEGGGCSEEEEEECC
T ss_pred             ccCCEEEEEECC-----CceEEEEEEEEecc--CCCeEEEehhh-hCCC----CCCCcEEEEEecChhheEEEecC
Confidence            478888887544     35689999999986  46899999996 4455    33433       58888888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	9e-16
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	2e-15
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	1e-13

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 69.0 bits (169), Expect = 9e-16
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 2   IKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNL 60
           I++     +P F  G  + V +  +  +  +++ F G+ I     G R  F +R +    
Sbjct: 15  IEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGE 74

Query: 61  GIEIAYDLYDPTIHNITVLRLEKRLDDDLLYLRD 94
           G+E  +    P ++ +T++   K     L YLR+
Sbjct: 75  GVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score = 68.9 bits (168), Expect = 2e-15
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 9   DIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
           D+P F  G  + V+   K     + + F GI I+ R  G    F +R V   +G+E  + 
Sbjct: 18  DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP 77

Query: 68  LYDPTIHNITVLRLEKRLDDDLLYLRD 94
           L+ P I  I +++  +     L ++R+
Sbjct: 78  LHSPLIQKIDIVQRGRARRAKLYFIRN 104

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 9   DIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD 67
           D+PSF  G  + V     +    + + F G+ I  R  GL   F +R + +  G+E  + 
Sbjct: 15  DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQ 74

Query: 68  LYDPTIHNITVLRLEKRLDDDLLYLRD 94
            + P + +I+V R        L YLR+
Sbjct: 75  THSPVVDSISVKRRGAVRKAKLYYLRE 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	100.0
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	100.0
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	100.0
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	97.8
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	97.43
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	97.25
d1zq1a1	74	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	86.32

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=7.2e-40  Score=262.07  Aligned_cols=91  Identities=22%  Similarity=0.447  Sum_probs=87.6

Q ss_pred             cccCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeec
Q psy12657          4 RRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLE   82 (260)
Q Consensus         4 Rr~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrg   82 (260)
                      +...+++|+|+|||+|+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|+|+++|
T Consensus        17 ~~~~k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl~SP~i~~IeV~r~~   96 (108)
T d2zjrm1          17 QDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFASPLVNQVTIVERG   96 (108)
T ss_dssp             GGGCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETTCTTEEEEEEEECC
T ss_pred             HHhCcCCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEEcCCCCccEEEEEEec
Confidence            445568999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceehhhc
Q psy12657         83 KRLDDDLLYLRD   94 (260)
Q Consensus        83 KVRRAKLYYLRd   94 (260)
                      ++||||||||||
T Consensus        97 kvRRakLyYLRd  108 (108)
T d2zjrm1          97 KVRRAKLYYLRE  108 (108)
T ss_dssp             CCSSSCCGGGCC
T ss_pred             ceeeeeeeeecC
Confidence            999999999997

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.5e-39  Score=268.27  Aligned_cols=95  Identities=25%  Similarity=0.457  Sum_probs=92.2

Q ss_pred             cccCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeec
Q psy12657          4 RRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLE   82 (260)
Q Consensus         4 Rr~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrg   82 (260)
                      ...+.++|+|+|||+|+|++.+.| +++|+|.|+|+||+++++|+++||||||+++|+|||++||||||+|++|+|+++|
T Consensus        13 ~~~k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fpl~SP~I~~IeVvr~g   92 (138)
T d2j01t1          13 RYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRG   92 (138)
T ss_dssp             CCCCSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECSSSSCSCCCBCCCCB
T ss_pred             HhhcccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEeccCCCccceEEeecC
Confidence            445678999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceehhhccCcc
Q psy12657         83 KRLDDDLLYLRDALPN   98 (260)
Q Consensus        83 KVRRAKLYYLRdr~gK   98 (260)
                      +||||||||||++.||
T Consensus        93 kvRRAKLyYLR~~~gk  108 (138)
T d2j01t1          93 RARRAKLYFIRNLSDR  108 (138)
T ss_dssp             CCSSSSCGGGSSSCSS
T ss_pred             ceehhheeehhhccch
Confidence            9999999999999999

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.5e-41  Score=269.63  Aligned_cols=95  Identities=25%  Similarity=0.418  Sum_probs=92.0

Q ss_pred             cccCCCCCCcCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCcCeeEEEEEeecceeEEEEEeecCCccceEEEeeec
Q psy12657          4 RRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDLYDPTIHNITVLRLE   82 (260)
Q Consensus         4 Rr~~~diPeF~vGDiV~V~~~i~E-~K~R~Q~F~GIVIarr~~Gl~sTFtLRnii~GvGVEr~FpLySP~I~sIeVlrrg   82 (260)
                      ...+.++|+|+|||+|+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||||||+|++|+|+++|
T Consensus        10 ~q~k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl~SP~I~~IeV~~~~   89 (114)
T d2gycn1          10 EQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRG   89 (114)
T ss_dssp             STTCCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCCCSSCTTCCCCCCCS
T ss_pred             HHhhccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEeCCCCcceeEEeccC
Confidence            345679999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceehhhccCcc
Q psy12657         83 KRLDDDLLYLRDALPN   98 (260)
Q Consensus        83 KVRRAKLYYLRdr~gK   98 (260)
                      +||||||||||++.||
T Consensus        90 kvRRaKLyYLR~~~gk  105 (114)
T d2gycn1          90 AVRKAKLYYLRERTGK  105 (114)
T ss_dssp             CCCCSCTTCCCCSSSC
T ss_pred             ceehhheeeeccCcch
Confidence            9999999999999999

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.80  E-value=3e-06  Score=66.43  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=38.5

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHh
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD  137 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrd  137 (260)
                      +++.|.|+|-.|.+|+|.|.+|+|++..|..+..|.||||
T Consensus        69 ki~~g~GVEr~fpl~SP~i~~IeV~r~~kvRRakLyYLRd  108 (108)
T d2zjrm1          69 KISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE  108 (108)
T ss_dssp             EEETTEEEEEEEETTCTTEEEEEEEECCCCSSSCCGGGCC
T ss_pred             EEecCccEEEEEEcCCCCccEEEEEEecceeeeeeeeecC
Confidence            4789999999999999999999999999999999999997

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=1.5e-05  Score=64.70  Aligned_cols=44  Identities=18%  Similarity=0.410  Sum_probs=40.8

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCC
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQ  141 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~  141 (260)
                      +++.|.|||-.|.+|||.|.+|+|++..|..+..|.||||....
T Consensus        65 ki~~gvGVEr~fpl~SP~I~~IeVvr~gkvRRAKLyYLR~~~gk  108 (138)
T d2j01t1          65 KVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDR  108 (138)
T ss_dssp             EEETTEEEEEEECSSSSCSCCCBCCCCBCCSSSSCGGGSSSCSS
T ss_pred             EEecCccEEEEEeccCCCccceEEeecCceehhheeehhhccch
Confidence            46899999999999999999999999999999999999997654

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=1.8e-05  Score=62.48  Aligned_cols=45  Identities=22%  Similarity=0.394  Sum_probs=41.8

Q ss_pred             ccccccceeeEEeecCCCCcceeEEEeeeecccchhHhHhhCCCC
Q psy12657         98 NVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQY  142 (260)
Q Consensus        98 K~v~g~gv~iky~~y~p~i~~i~vl~lekrld~~l~ylrda~~~~  142 (260)
                      +++.|.|+|-.|.+|+|.|.+|+|++-.|.-+..|.||||..+.-
T Consensus        62 ki~~GvGVEr~fpl~SP~I~~IeV~~~~kvRRaKLyYLR~~~gk~  106 (114)
T d2gycn1          62 KISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKA  106 (114)
T ss_dssp             CCCCCSSSCCCCCCCSSCTTCCCCCCCSCCCCSCTTCCCCSSSCC
T ss_pred             EecCCccEEEEEEeCCCCcceeEEeccCceehhheeeeccCcchH
Confidence            478999999999999999999999999999999999999987643

>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=86.32  E-value=0.44  Score=34.21  Aligned_cols=64  Identities=22%  Similarity=0.307  Sum_probs=41.8

Q ss_pred             CcCCCCEEEEEEEecCCCcccceEEEEEEEEecCCcCeeEEEEEe-ecceeEEEEEeecCCccceEEEeeeccc
Q psy12657         12 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNV-VDNLGIEIAYDLYDPTIHNITVLRLEKR   84 (260)
Q Consensus        12 eF~vGDiV~V~~~i~E~K~R~Q~F~GIVIarr~~Gl~sTFtLRni-i~GvGVEr~FpLySP~I~sIeVlrrgKV   84 (260)
                      .+.+||.|+|......+   -..|+|+++-.-..+-...++|.=. =+++|+..      -.|++|+|+.++++
T Consensus        10 ~~~~GD~Vri~~~~~~~---~~~~eGilmP~~e~s~~~~ivlKL~nGYNiGi~~------~~i~~ievlek~kv   74 (74)
T d1zq1a1          10 NINVGDFVRITKEEDGE---EVTYEGYIMPPYELSAGDTLVLKLENGYNIGIAL------EKIRRIEVLERAKV   74 (74)
T ss_dssp             TCCTTCEEEEEEESSSS---EEECCEEECCCCTTCCCSEEEEEETTSCEEEEEG------GGEEEEEEEECCCC
T ss_pred             CCCCCCEEEEEEecCCC---ceEEEEEEcCCcccCCCCEEEEEecCceeeccch------hHeeEEEEEeeccC
Confidence            46799999998765421   2469999998754433444554322 24455543      37889999988764