Psyllid ID: psy1265

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MSILDTSYWHGSHALECKRNIQTEPTYLRRVTIHCLVPRGLIEGTVATEVLSFRNRKGERIGQETASRSEKDTSYWRGSHALECKRNIHYIQTEPTYLRRVTIHCLVPRGLIEGPVATEVLSFRNRKGEDRTGDSQPFRERTLSVQDKGTPYIRPDLDVKVVALTSPLLLPSSSEFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILENQGKTYMASLAQHLPVLVTSSYRRKNSLWFCTQQDTDKS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEEEEEEccccccccEEcEEEEEEEcccccccccEEccccccccccccccccEEEcccccccccccEEEEEEEEEcccccccccccccEEcccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEEEccEEEEEccccEEEEEccccccccccEEEEcEEEEEEccccEEEccccccccccEEEEEEEEEEccccEEEEEEccccccccccccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHccccccEEEEEEccccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEccccccccHHHHHHHcccccccHHEEEEEEEccccccEcccEEEEEEEEccccccccccEcccccccccccccccHHHHHHccEEEEEccccHEEEEEEEEcccccccccccEEEEEEEEccccccccccccccccEEEEEEcccccccccccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHHccccccEEEEEEEcccEEEEccccEEEEEccccccccccEEEEEEEEEEcccccEEEccccccccEEEEEEEEEEEcccccEEEEEEEcccccEEEccccccEEEEEEEEEEEccccccccccccccHHEHHHHHHHHHHHHHccccHHHHHHHHcccEEEEccccccccEEEEEccccccc
Coil and Loop (DISEMBL)
msildtsywhgshaleckrniqteptylrRVTIHclvprgliegtVATEVLSFRnrkgerigqetasrsekdtsywrgshaleckrnihyiqteptylRRVTIHclvprgliegpvaTEVLSFrnrkgedrtgdsqpfrertlsvqdkgtpyirpdldVKVVALtsplllpssseftkgteiVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGrqtkvtpndiiivdsnsfaplngdkikFEKVLLvggadftlvgrplltpglvnvTGTIIEkdlshtrtnfrkiprkrhtrFRFFRTQLTMIRINEIEIIEKvgqrkdvegTQRLINLCLQTQYNLILENQGKTYMASLAQHLPVLVTSsyrrknslwfctqqdtdks
Flexible Loop (DISEMBL)
msildtsywhgshaleckrniqteptYLRRVTIHClvprgliegtvatevlsfrnrkgerigqetasrsekdtsywrgsHALECKRNIHYIQTEPTYLRRVTIHCLVPrgliegpvaTEVLsfrnrkgedrtgdsqpfrertlsvqdkgtpyirpdLDVKVVALTSplllpssseftkgtEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLgrqtkvtpndIIIVdsnsfaplngdKIKFEKVLLVGGADFtlvgrplltpglvnvtgtiiekdlshtrtnfrkiprkrhtrfrffrtqltmirineieiiekvgqrkdveGTQRLINLCLQTQYNLILENQGKTYMASLAQHLPVLVTssyrrknslwfctqqdtdks
Low Complexity Region (SEG)
MSILDTSYWHGSHALECKRNIQTEPTYLRRVTIHCLVPRGLIEGTVATEVLSFRNRKGERIGQETASRSEKDTSYWRGSHALECKRNIHYIQTEPTYLRRVTIHCLVPRGLIEGPVATEVLSFRNRKGEDRTGDSQPFRERTLSVQDKGTPYIRPDLDVKVVAltsplllpsssEFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTrfrffrTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILENQGKTYMASLAQHLPVLVTSSYRRKNSLWFCTQQDTDKS
Disordered region (IsUnstruct)
****DTSYWHGSHALECKRNIQTEPTYLRRVTIHCLVPRGLIEGTVATEVLSFR********************YWRGSHALECKRNIHYIQTEPTYLRRVTIHCLVPRGLIEGPVATEVLSF***************************PYIRPDLDVKVVALTSPLLLPSSSEFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILENQGKTYMASLAQHLPVLVTSSYRRKNSLWFCT*******
Disordered Region (DISOPRED)
**ILDTSYWHGSHALECKRNIQTEPTYLRRVTIHCLVPRGLIEGTVATEVLSF**********************WRGSHALECKRNIHYIQTEPTYLRRVTIHCLVPRGLIEGPV***************************************************************************************NEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEI****************INLCLQTQYNLILENQ*KTYMASLAQHLPVLVTSSYRRKNSLWFC*QQ*****
Disordered Region (DISEMBL)
MSILDTSYWHGSHALECKRNIQTEPTYLRRVTIHCLVPRGLIEGTVATEVLSFRNRKG****************YWRGSHALECKRNIHYIQTEPTYLRRVTIHCLVPRGLIEGPVATEVLSFRN************FRERTLSVQDKGTPYIRPDLDVKVVALTSPLLLPSSSEFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILENQGKTYMASLAQHLPVLVTSSYRRKNSLWFCTQQDTDKS
Disordered Region (DISPRO)
*SILDTSYWHGSHALECKRNIQTEPTYLRRVTIHCLVPRGLIEGTVATEVLSFRNRK***************TSYWRGSHALECKRNIHYIQTEPTYLRRVTIHCLVPRGLIEGPVATEVLSFRNR************RERTLSVQDKGTPYIRPDLDVKVVALTSPLLLPSS************KLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILENQGKTYMASLAQHLPVLVTSSYRRKNSLWFCTQQ*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSILDTSYWHGSHALECKRNIQTEPTYLRRVTIHCLVPRGLIEGTVATEVLSFRNRKGERIGQETASRSEKDTSYWRGSHALECKRNIHYIQTEPTYLRRVTIHCLVPRGLIEGPVATEVLSFRNRKGEDRTGDSQPFRERTLSVQDKGTPYIRPDLDVKVVALTSPLLLPSSSEFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILENQGKTYMASLAQHLPVLVTSSYRRKNSLWFCTQQDTDKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	384	2.2.26 [Sep-21-2011]
Q2TBS2	209	39S ribosomal protein L21	yes	N/A	0.317	0.583	0.455	3e-20
Q7Z2W9	205	39S ribosomal protein L21	yes	N/A	0.307	0.575	0.453	3e-16
Q9D1N9	209	39S ribosomal protein L21	yes	N/A	0.307	0.564	0.420	2e-15
A9M887	142	50S ribosomal protein L21	yes	N/A	0.252	0.683	0.352	8e-08
Q8FYL7	142	50S ribosomal protein L21	yes	N/A	0.252	0.683	0.352	9e-08
A9WWX3	142	50S ribosomal protein L21	yes	N/A	0.252	0.683	0.352	9e-08
Q8YJ85	142	50S ribosomal protein L21	yes	N/A	0.252	0.683	0.352	9e-08
C0RF98	142	50S ribosomal protein L21	yes	N/A	0.252	0.683	0.352	9e-08
Q8VW57	142	50S ribosomal protein L21	yes	N/A	0.252	0.683	0.352	1e-07
Q2YLL7	142	50S ribosomal protein L21	yes	N/A	0.252	0.683	0.352	1e-07

>sp|Q2TBS2|RM21_BOVIN 39S ribosomal protein L21, mitochondrial OS=Bos taurus GN=MRPL21 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 73/123 (59%), Gaps = 1/123 (0%)

Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
           VN  I   + GRLFA++H    Q KVT  D+I+++ N      G++I+ EKVLLVG  DF
Sbjct: 87  VNELIAGGQYGRLFAVVHFASHQWKVTSEDLILIE-NKLDIACGERIRMEKVLLVGADDF 145

Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEII 316
           TL+GRPLL   LV V  T+IEK  S  R N R   RK + R R      T++RIN IEI 
Sbjct: 146 TLLGRPLLGKDLVRVEATVIEKTESWPRVNMRFQKRKNYKRKRIIVNPQTVLRINTIEIA 205

Query: 317 EKV 319
            ++
Sbjct: 206 PRL 208

Bos taurus (taxid: 9913)

>sp|Q7Z2W9|RM21_HUMAN 39S ribosomal protein L21, mitochondrial OS=Homo sapiens GN=MRPL21 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
           VN  I   + GRLFA++H   RQ KVT  D+I++  N      G++I+ EKVLLVG  +F
Sbjct: 83  VNEMIVTGQYGRLFAVVHFASRQWKVTSEDLILI-GNELDLACGERIRLEKVLLVGADNF 141

Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEI 315
           TL+G+PLL   LV V  T+IEK  S  R   R   RK   + R   T  T++RIN IEI
Sbjct: 142 TLLGKPLLGKDLVRVEATVIEKTESWPRIIMRFRKRKNFKKKRIVTTPQTVLRINSIEI 200

Homo sapiens (taxid: 9606)

>sp|Q9D1N9|RM21_MOUSE 39S ribosomal protein L21, mitochondrial OS=Mus musculus GN=Mrpl21 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 1/119 (0%)

Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
           VN  I   + GRLFA++H    Q KVT  D+I+++ N      G++I+ EKVLLVG  +F
Sbjct: 87  VNELIATGQYGRLFAVVHFASHQWKVTAEDLILIE-NELDIKCGERIRLEKVLLVGADNF 145

Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEI 315
           TL+G+PLL   LV V  T+IEK  S  + N +   RK   + +      T++RIN IEI
Sbjct: 146 TLLGKPLLRKELVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEI 204

Mus musculus (taxid: 10090)

>sp|A9M887|RL21_BRUC2 50S ribosomal protein L21 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplU PE=3 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           +FA+I   G+Q +V  ND+I V+    A   GD ++F +VL+VG    + +G P +   L
Sbjct: 1   MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           V  T  ++E+        F+K  R+   R R  R +LT IRI+EI
Sbjct: 55  V--TAEVVEQSRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97

This protein binds to 23S rRNA in the presence of protein L20.

Brucella canis (strain ATCC 23365 / NCTC 10854) (taxid: 483179)

>sp|Q8FYL7|RL21_BRUSU 50S ribosomal protein L21 OS=Brucella suis biovar 1 (strain 1330) GN=rplU PE=3 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           +FA+I   G+Q +V  ND+I V+    A   GD ++F +VL+VG    + +G P +   L
Sbjct: 1   MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           V  T  ++E+        F+K  R+   R R  R +LT IRI+EI
Sbjct: 55  V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97

This protein binds to 23S rRNA in the presence of protein L20.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

>sp|A9WWX3|RL21_BRUSI 50S ribosomal protein L21 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplU PE=3 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           +FA+I   G+Q +V  ND+I V+    A   GD ++F +VL+VG    + +G P +   L
Sbjct: 1   MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           V  T  ++E+        F+K  R+   R R  R +LT IRI+EI
Sbjct: 55  V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97

This protein binds to 23S rRNA in the presence of protein L20.

Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137)

>sp|Q8YJ85|RL21_BRUME 50S ribosomal protein L21 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=rplU PE=3 SV=2

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           +FA+I   G+Q +V  ND+I V+    A   GD ++F +VL+VG    + +G P +   L
Sbjct: 1   MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           V  T  ++E+        F+K  R+   R R  R +LT IRI+EI
Sbjct: 55  V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97

This protein binds to 23S rRNA in the presence of protein L20.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

>sp|C0RF98|RL21_BRUMB 50S ribosomal protein L21 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplU PE=3 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           +FA+I   G+Q +V  ND+I V+    A   GD ++F +VL+VG    + +G P +   L
Sbjct: 1   MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGAL 54

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           V  T  ++E+        F+K  R+   R R  R +LT IRI+EI
Sbjct: 55  V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97

This protein binds to 23S rRNA in the presence of protein L20.

Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272)

>sp|Q8VW57|RL21_BRUAB 50S ribosomal protein L21 OS=Brucella abortus biovar 1 (strain 9-941) GN=rplU PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           +FA+I   G+Q +V  ND+I V+    A   GD ++F +VL+VG    + +G P +   L
Sbjct: 1   MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGSL 54

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           V  T  ++E+        F+K  R+   R R  R +LT IRI+EI
Sbjct: 55  V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97

This protein binds to 23S rRNA in the presence of protein L20.

Brucella abortus biovar 1 (strain 9-941) (taxid: 262698)

>sp|Q2YLL7|RL21_BRUA2 50S ribosomal protein L21 OS=Brucella abortus (strain 2308) GN=rplU PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 8/105 (7%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           +FA+I   G+Q +V  ND+I V+    A   GD ++F +VL+VG    + +G P +   L
Sbjct: 1   MFAVIKTGGKQYRVAANDLIKVEK--VAGEAGDIVEFAEVLMVG----STIGAPTVAGSL 54

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           V  T  ++E+        F+K  R+   R R  R +LT IRI+EI
Sbjct: 55  V--TAEVVEQGRGRKVIAFKKRRRQNSKRTRGHRQELTTIRISEI 97

This protein binds to 23S rRNA in the presence of protein L20.

Brucella abortus (strain 2308) (taxid: 359391)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
312380499	265	hypothetical protein AND_07433 [Anophele	0.341	0.494	0.530	4e-33
57908551	198	AGAP012030-PC [Anopheles gambiae str. PE	0.434	0.843	0.454	6e-33
170071612	201	39S ribosomal protein L21, mitochondrial	0.398	0.761	0.480	6e-32
170060659	201	39S ribosomal protein L21, mitochondrial	0.398	0.761	0.480	7e-32
195377708	201	GJ11824 [Drosophila virilis] gi|19415478	0.348	0.666	0.525	1e-31
322789862	182	hypothetical protein SINV_13821 [Solenop	0.351	0.741	0.543	1e-31
195496319	201	GE22516 [Drosophila yakuba] gi|194181744	0.346	0.661	0.507	3e-31
194751680	202	GF10776 [Drosophila ananassae] gi|190625	0.398	0.757	0.458	3e-31
195352329	201	GM14887 [Drosophila sechellia] gi|194124	0.346	0.661	0.507	6e-31
194873952	201	GG13419 [Drosophila erecta] gi|190655094	0.346	0.661	0.507	7e-31

>gi|312380499|gb|EFR26474.1| hypothetical protein AND_07433 [Anopheles darlingi]

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 96/132 (72%), Gaps = 1/132 (0%)

Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
           +N Q+E   +GRLFA++ + G+Q K+T  DII+V+   + P NGD+++ +KVLL GG+DF
Sbjct: 130 INKQLETGTEGRLFAVVQLCGKQFKITTGDIIVVE-GYWPPENGDRLRLDKVLLAGGSDF 188

Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEII 316
           +L+GRPLL PGLV+V  TI+EK LSHTRT+FRK  RK++ R  F+R Q TMIRIN IEI 
Sbjct: 189 SLIGRPLLAPGLVDVQATIVEKTLSHTRTHFRKKRRKQYMRINFYRNQQTMIRINSIEIT 248

Query: 317 EKVGQRKDVEGT 328
            K+ +    E T
Sbjct: 249 RKLAESGAPEAT 260

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|57908551|ref|XP_552180.1| AGAP012030-PC [Anopheles gambiae str. PEST] gi|158300626|ref|XP_001689265.1| AGAP012030-PB [Anopheles gambiae str. PEST] gi|158300628|ref|XP_001689266.1| AGAP012030-PA [Anopheles gambiae str. PEST] gi|55234635|gb|EAL38786.1| AGAP012030-PC [Anopheles gambiae str. PEST] gi|157013251|gb|EDO63331.1| AGAP012030-PB [Anopheles gambiae str. PEST] gi|157013252|gb|EDO63332.1| AGAP012030-PA [Anopheles gambiae str. PEST]

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 111/174 (63%), Gaps = 7/174 (4%)

Query: 159 VKVVALTSPLLLPSSS----EFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIH 214
           +K+V LTS    PS++     ++  + +    L+     L  VN Q+E   +GRLFA++ 
Sbjct: 22  LKIVPLTSRWSNPSAAFANHRWSSSSAVAP--LADTKSTLETVNKQLETGSEGRLFAVVQ 79

Query: 215 VLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGT 274
           + G+Q K+T  DII+V+   + P  GD+++ +KVLL G  DF+L+GRPLLTPGLV+V  T
Sbjct: 80  LCGKQFKITSGDIIVVE-GYWPPEGGDRLRLDKVLLAGSKDFSLIGRPLLTPGLVDVQAT 138

Query: 275 IIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGT 328
           IIEK LSHTRT+FRK  RK++TR  F+RT  TMIRIN I+I  K+      E  
Sbjct: 139 IIEKTLSHTRTHFRKKRRKQYTRINFYRTPQTMIRINSIDIKRKLSDSASAEAA 192

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170071612|ref|XP_001869957.1| 39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus] gi|167867547|gb|EDS30930.1| 39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus]

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 103/156 (66%), Gaps = 3/156 (1%)

Query: 165 TSPLLLPSSSEFTKGTEIVSTKLSSVPV--YLNLVNNQIERNEQGRLFAIIHVLGRQTKV 222
           T+P   P+ +     T   S+  + +P    +  VN Q+    +GRLFA++ + G+Q K+
Sbjct: 30  TTPQTAPALTTLVCKTRFNSSLAAPLPSGSVVKAVNAQLASASEGRLFAVVQLCGKQFKI 89

Query: 223 TPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSH 282
           T  DIIIV+   + P NGD+I+ +KVLL GG DF+L+GRPL+  GLV+V  TIIEK LSH
Sbjct: 90  TSGDIIIVE-GYWPPTNGDRIRLDKVLLAGGKDFSLIGRPLVPAGLVDVQATIIEKSLSH 148

Query: 283 TRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEK 318
           T+T+FRK  RK++ R  FFR Q TMIRIN IE+ EK
Sbjct: 149 TKTHFRKKRRKQYMRINFFRAQQTMIRINSIELSEK 184

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170060659|ref|XP_001865900.1| 39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus] gi|167879081|gb|EDS42464.1| 39S ribosomal protein L21, mitochondrial [Culex quinquefasciatus]

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 103/156 (66%), Gaps = 3/156 (1%)

Query: 165 TSPLLLPSSSEFTKGTEIVSTKLSSVPV--YLNLVNNQIERNEQGRLFAIIHVLGRQTKV 222
           T+P   P+ +     T   S+  + +P    +  VN Q+    +GRLFA++ + G+Q K+
Sbjct: 30  TTPQTAPALTTLVCKTRFNSSIAAPLPSGSVVKAVNAQLASASEGRLFAVVQLCGKQFKI 89

Query: 223 TPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSH 282
           T  DIIIV+   + P NGD+I+ +KVLL GG DF+L+GRPL+  GLV+V  TIIEK LSH
Sbjct: 90  TSGDIIIVE-GYWPPTNGDRIRLDKVLLAGGKDFSLIGRPLVPAGLVDVQATIIEKSLSH 148

Query: 283 TRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEK 318
           T+T+FRK  RK++ R  FFR Q TMIRIN IE+ EK
Sbjct: 149 TKTHFRKKRRKQYMRINFFRAQQTMIRINSIELSEK 184

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377708|ref|XP_002047630.1| GJ11824 [Drosophila virilis] gi|194154788|gb|EDW69972.1| GJ11824 [Drosophila virilis]

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 96/137 (70%), Gaps = 3/137 (2%)

Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
           +N Q+ R EQGRLFA++H+ G+Q K+TP DII+V+   + P  GD+I  +KVLL G  DF
Sbjct: 65  INQQVARAEQGRLFAVVHLCGKQFKITPGDIILVE-GYWPPTIGDEISLDKVLLAGARDF 123

Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEII 316
           TL+GRP+L PGLV V  TIIEK L+HT+T+F+K  RK++ R  F R+  TMIRIN IE+ 
Sbjct: 124 TLIGRPILEPGLVTVKATIIEKTLTHTKTHFKKKRRKQYMRINFQRSPNTMIRINSIELT 183

Query: 317 EKV--GQRKDVEGTQRL 331
             V  G   D E ++RL
Sbjct: 184 RPVDGGGEPDAEPSKRL 200

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789862|gb|EFZ15009.1| hypothetical protein SINV_13821 [Solenopsis invicta]

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 99/138 (71%), Gaps = 3/138 (2%)

Query: 195 NLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLN-GDKIKFEKVLLVGG 253
           N +NNQI  +  GR+FAI+ V G+Q KVT +DIII++   F P N GD++K EKVLLVG 
Sbjct: 46  NEINNQIATDTTGRMFAIVQVCGKQFKVTEHDIIIIEG--FWPPNIGDQLKLEKVLLVGS 103

Query: 254 ADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
            DFTL+GRP+L   LV+V  T+IEK LSHT+T FR  PRK++ R  F+R Q TM+RIN I
Sbjct: 104 KDFTLIGRPILNRELVSVNVTVIEKTLSHTKTRFRFRPRKQYRRINFYRIQHTMLRINSI 163

Query: 314 EIIEKVGQRKDVEGTQRL 331
            I  K+ ++K+VEG  R+
Sbjct: 164 SINSKIDEKKEVEGLDRV 181

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195496319|ref|XP_002095643.1| GE22516 [Drosophila yakuba] gi|194181744|gb|EDW95355.1| GE22516 [Drosophila yakuba]

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
           +N Q++++EQGRLFA++H+ G+Q KVTP DII+V+   + P  GD+I  +KVLL G  DF
Sbjct: 66  INRQVQKSEQGRLFAVVHLCGKQFKVTPGDIIVVE-GYWPPTIGDEISLDKVLLAGARDF 124

Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEII 316
           TLVGRP+L PGL++V  T++EK LSHT+T+FRK  RK++ R  F R+  TM+RIN IE+ 
Sbjct: 125 TLVGRPILEPGLISVKATVVEKTLSHTKTHFRKKRRKQYMRINFQRSPHTMVRINSIELA 184

Query: 317 EKVGQRKDVEGTQR 330
             V    + E + R
Sbjct: 185 RPVDGNGEEEPSSR 198

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751680|ref|XP_001958153.1| GF10776 [Drosophila ananassae] gi|190625435|gb|EDV40959.1| GF10776 [Drosophila ananassae]

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 102/157 (64%), Gaps = 4/157 (2%)

Query: 171 PSSSEFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIV 230
           PSS +    + I   +L         +N Q+ ++EQGRLFA++H+ G+Q K+TP DII+V
Sbjct: 43  PSSVD---ASAIAKDQLKECQSICERINKQVAKSEQGRLFAVVHLCGKQFKITPGDIILV 99

Query: 231 DSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKI 290
           +   + P  GD+I  +KVLL G  DFTLVGRP+L PGLV+V  T++EK L+HT+T+FRK 
Sbjct: 100 E-GYWPPTIGDEISLDKVLLAGARDFTLVGRPILEPGLVSVKATVVEKTLTHTKTHFRKK 158

Query: 291 PRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEG 327
            RK++ R  F R+  TMIRIN IE+   V  + + E 
Sbjct: 159 RRKQYMRINFQRSPNTMIRINSIELARPVDAKTEPES 195

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195352329|ref|XP_002042665.1| GM14887 [Drosophila sechellia] gi|194124549|gb|EDW46592.1| GM14887 [Drosophila sechellia]

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 95/134 (70%), Gaps = 1/134 (0%)

Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
           +N Q++++E+GRLFA++H+ G+Q KVTP DII+V+   + P  GD+I  +KVLL G  DF
Sbjct: 66  INRQVQKSEEGRLFAVVHLCGKQFKVTPGDIILVE-GYWPPTIGDEISLDKVLLAGARDF 124

Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEII 316
           TLVGRP+L PGL+ V  T++EK LSHT+T+FRK  RK++ R  F R+  TM+RIN IE+ 
Sbjct: 125 TLVGRPILEPGLILVKATVVEKTLSHTKTHFRKKRRKQYMRINFQRSPHTMVRINSIELA 184

Query: 317 EKVGQRKDVEGTQR 330
             V    D E + R
Sbjct: 185 RPVDGNGDGEASSR 198

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194873952|ref|XP_001973311.1| GG13419 [Drosophila erecta] gi|190655094|gb|EDV52337.1| GG13419 [Drosophila erecta]

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 95/134 (70%), Gaps = 1/134 (0%)

Query: 197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
           +N Q++++EQGRLFA++H+ G+Q KVTP DII+V+   + P  GD+I  +KVLL G  DF
Sbjct: 66  INRQVQKSEQGRLFAVVHLCGKQFKVTPGDIILVE-GYWPPTIGDEISLDKVLLAGARDF 124

Query: 257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEII 316
           TLVGRP+L PGL+ V  T++EK LSHT+T+FRK  RK++ R  F R+  TM+RIN IE+ 
Sbjct: 125 TLVGRPILEPGLITVKATVVEKTLSHTKTHFRKKRRKQYMRINFQRSPHTMVRINSIELT 184

Query: 317 EKVGQRKDVEGTQR 330
             V    + E + R
Sbjct: 185 RPVDGNGEEEPSSR 198

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
FB|FBgn0036853	201	mRpL21 "mitochondrial ribosoma	0.346	0.661	0.485	2.3e-30
UNIPROTKB|E1BWV6	189	MRPL21 "Uncharacterized protei	0.307	0.624	0.445	1.9e-20
ZFIN|ZDB-GENE-061027-183	234	zgc:153377 "zgc:153377" [Danio	0.307	0.504	0.462	3.4e-20
UNIPROTKB|F1MSV8	209	MRPL21 "39S ribosomal protein	0.317	0.583	0.439	7.7e-20
UNIPROTKB|Q2TBS2	209	MRPL21 "39S ribosomal protein	0.317	0.583	0.439	7.7e-20
UNIPROTKB|F1RY70	209	MRPL21 "Uncharacterized protei	0.307	0.564	0.428	8.7e-19
UNIPROTKB|Q7Z2W9	205	MRPL21 "39S ribosomal protein	0.307	0.575	0.445	1.2e-18
MGI|MGI:2660674	209	Mrpl21 "mitochondrial ribosoma	0.317	0.583	0.406	9.6e-18
RGD|1310203	209	Mrpl21 "mitochondrial ribosoma	0.317	0.583	0.406	1.6e-17
WB|WBGene00023422	171	mrpl-21 [Caenorhabditis elegan	0.338	0.760	0.320	6.2e-16

FB|FBgn0036853 mRpL21 "mitochondrial ribosomal protein L21" [Drosophila melanogaster (taxid:7227)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 65/134 (48%), Positives = 92/134 (68%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             +N Q++++EQGRLFA++H+ G+Q KVTP DII+V+   + P  GD+I  +KVLL G  DF
Sbjct:    66 INRQVQKSEQGRLFAVVHLCGKQFKVTPGDIILVEGY-WPPTIGDEISLDKVLLAGARDF 124

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
             TLVGRP+L PGL+ V  T++EK LSHT+T+FRK  RK++       +  TM+RIN IE+ 
Sbjct:   125 TLVGRPILEPGLILVKATVVEKTLSHTKTHFRKKRRKQYMRINFQRSPHTMVRINSIELA 184

Query:   317 EKVGQRKDVEGTQR 330
               V    + E + R
Sbjct:   185 RPVDGNGEGESSSR 198

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E1BWV6 MRPL21 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 53/119 (44%), Positives = 71/119 (59%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             VN  I   + GRLFA++H   +Q K+T  D+I++D N      GD+I+ EKVLLVG  DF
Sbjct:    67 VNEMIATGQYGRLFAVVHFASKQYKITSEDLIMMD-NVLQAECGDRIRMEKVLLVGADDF 125

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEI 315
             TL+GRPLL   LV V  T+IEK +S  + N R   R+ +          T++RIN IEI
Sbjct:   126 TLIGRPLLGRDLVRVEATVIEKTVSWPKINMRFRKRQNYLRKKIITNPQTVLRINTIEI 184

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-061027-183 zgc:153377 "zgc:153377" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 55/119 (46%), Positives = 72/119 (60%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             VN  IE  + GRLFA++H   RQ KVT  D+I+++++  A   GD+I+ EKVLLVGG+DF
Sbjct:   112 VNALIEEGQYGRLFAVVHFAARQWKVTNEDLILIENHLDAEC-GDRIRMEKVLLVGGSDF 170

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEI 315
             TLVG+PLL   LV V  T+IEK  S    + R   R R           T++RIN I I
Sbjct:   171 TLVGKPLLGRDLVQVQATVIEKTQSWPMVHMRFWKRHRFQKKRIIVQPQTVLRINTIHI 229

GO:0003723 "RNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1MSV8 MRPL21 "39S ribosomal protein L21, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 237 (88.5 bits), Expect = 7.7e-20, P = 7.7e-20
 Identities = 54/123 (43%), Positives = 71/123 (57%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             VN  I   + GRLFA++H    Q KVT  D+I+++ N      G++I+ EKVLLVG  DF
Sbjct:    87 VNELIAGGQYGRLFAVVHFASHQWKVTSEDLILIE-NKLDIACGERIRLEKVLLVGADDF 145

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
             TL+GRPLL   LV V  T+IEK  S  R N R   RK +          T++RIN IEI 
Sbjct:   146 TLLGRPLLGKDLVRVEATVIEKTESWPRVNMRFQKRKNYKRKRIIVNPQTVLRINTIEIA 205

Query:   317 EKV 319
              ++
Sbjct:   206 PRL 208

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q2TBS2 MRPL21 "39S ribosomal protein L21, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 237 (88.5 bits), Expect = 7.7e-20, P = 7.7e-20
 Identities = 54/123 (43%), Positives = 71/123 (57%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             VN  I   + GRLFA++H    Q KVT  D+I+++ N      G++I+ EKVLLVG  DF
Sbjct:    87 VNELIAGGQYGRLFAVVHFASHQWKVTSEDLILIE-NKLDIACGERIRMEKVLLVGADDF 145

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
             TL+GRPLL   LV V  T+IEK  S  R N R   RK +          T++RIN IEI 
Sbjct:   146 TLLGRPLLGKDLVRVEATVIEKTESWPRVNMRFQKRKNYKRKRIIVNPQTVLRINTIEIA 205

Query:   317 EKV 319
              ++
Sbjct:   206 PRL 208

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1RY70 MRPL21 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 228 (85.3 bits), Expect = 8.7e-19, P = 8.7e-19
 Identities = 51/119 (42%), Positives = 69/119 (57%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             VN  I     GRLFA++H  G Q KVT  D+I+++ N      G++I+ EKVLLVG  +F
Sbjct:    87 VNELIAAGRYGRLFAVVHFAGHQWKVTAEDLILIE-NELDVACGERIRLEKVLLVGADNF 145

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEI 315
             TL+G+PLL   LV V  T+IEK  S  + N +   RK +          T++RIN IEI
Sbjct:   146 TLLGKPLLGKELVRVEATVIEKTESWPKINMKFQKRKNYQRKRITVNPQTVLRINSIEI 204

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q7Z2W9 MRPL21 "39S ribosomal protein L21, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 53/119 (44%), Positives = 68/119 (57%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             VN  I   + GRLFA++H   RQ KVT  D+I++  N      G++I+ EKVLLVG  +F
Sbjct:    83 VNEMIVTGQYGRLFAVVHFASRQWKVTSEDLILI-GNELDLACGERIRLEKVLLVGADNF 141

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEI 315
             TL+G+PLL   LV V  T+IEK  S  R   R   RK         T  T++RIN IEI
Sbjct:   142 TLLGKPLLGKDLVRVEATVIEKTESWPRIIMRFRKRKNFKKKRIVTTPQTVLRINSIEI 200

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:2660674 Mrpl21 "mitochondrial ribosomal protein L21" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 9.6e-18, P = 9.6e-18
 Identities = 50/123 (40%), Positives = 70/123 (56%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             VN  I   + GRLFA++H    Q KVT  D+I+++ N      G++I+ EKVLLVG  +F
Sbjct:    87 VNELIATGQYGRLFAVVHFASHQWKVTAEDLILIE-NELDIKCGERIRLEKVLLVGADNF 145

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
             TL+G+PLL   LV V  T+IEK  S  + N +   RK            T++RIN IEI 
Sbjct:   146 TLLGKPLLRKELVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEIA 205

Query:   317 EKV 319
              ++
Sbjct:   206 PRL 208

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1310203 Mrpl21 "mitochondrial ribosomal protein L21" [Rattus norvegicus (taxid:10116)]

 Score = 217 (81.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 50/123 (40%), Positives = 70/123 (56%)

Query:   197 VNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF 256
             VN  I   + GRLFA++H    Q KVT  D+I+++ N      G++I+ EKVLLVG  +F
Sbjct:    87 VNELIAAGQYGRLFAVVHFASHQWKVTAEDLILIE-NELDIKCGERIRLEKVLLVGTDNF 145

Query:   257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXXXXXTQLTMIRINEIEII 316
             TL+G+PLL   LV V  T+IEK  S  + N +   RK            T++RIN IEI 
Sbjct:   146 TLLGKPLLGKDLVRVEATVIEKTESWPKINMKFRKRKNFRKKKIIVNPQTILRINTIEIA 205

Query:   317 EKV 319
              ++
Sbjct:   206 PRL 208

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

WB|WBGene00023422 mrpl-21 [Caenorhabditis elegans (taxid:6239)]

 Score = 203 (76.5 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 43/134 (32%), Positives = 79/134 (58%)

Query:   181 EIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLN- 239
             +++ T+     V+ + +++++   ++ RLFA+++V GRQ KV+  D+I ++ N   PLN 
Sbjct:    34 QVIDTEQVQKEVFKS-ISDEVNEEKRQRLFAVVYVNGRQWKVSDGDLINMEGN--LPLNV 90

Query:   240 GDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTXXX 299
             GD+IK EKVL+VGG +F+L GRPLL    V V   ++EK  ++   ++  +   +     
Sbjct:    91 GDEIKLEKVLMVGGTNFSLFGRPLLDASAVTVDAVVVEKKTTNPELHYVHLNHHQTKFLN 150

Query:   300 XXXTQLTMIRINEI 313
                 + T++RI  +
Sbjct:   151 WKSDEATVLRIKSV 164

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	384
pfam00829	96	pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L	9e-20
PRK05573	103	PRK05573, rplU, 50S ribosomal protein L21; Validat	7e-15
COG0261	103	COG0261, RplU, Ribosomal protein L21 [Translation,	7e-15
PRK12278	221	PRK12278, PRK12278, 50S ribosomal protein L21/unkn	1e-11
TIGR00061	101	TIGR00061, L21, ribosomal protein L21	5e-10
CHL00075	108	CHL00075, rpl21, ribosomal protein L21	2e-05

>gnl|CDD|201461 pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein

 Score = 82.9 bits (206), Expect = 9e-20
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           ++AII   G+Q KV   D+I V+        GDKI+F+KVLLVGG     +G+P +    
Sbjct: 1   MYAIIETGGKQYKVEEGDVIFVEKLDAEV--GDKIEFDKVLLVGGDGKVKIGKPYVEGAK 58

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMI 308
             V   ++E         F+   RK + + +  R   T +
Sbjct: 59  --VKAEVLEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTRV 96

Length = 96

>gnl|CDD|235510 PRK05573, rplU, 50S ribosomal protein L21; Validated

 Score = 69.7 bits (172), Expect = 7e-15
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           +AII   G+Q KV   D+I V+        GD ++F++VLLVGG +   +G P +  G  
Sbjct: 2   YAIIKTGGKQYKVEEGDVIKVEKLDAEV--GDTVEFDEVLLVGGGEEVKIGAPYV-EG-A 57

Query: 270 NVTGTIIEKDLSHTR----TNFRKIPRKRHTRFRFFRTQLTMIRINEIE 314
            VT  ++E    H R      F+   RK + + +  R   T ++I  I 
Sbjct: 58  KVTAEVVE----HGRGKKVIVFKYKRRKNYRKKQGHRQPYTKVKITSIN 102

Length = 103

>gnl|CDD|223339 COG0261, RplU, Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 12/109 (11%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           ++AII   G+Q KV   D+I V+     P  GDK++F++VL+VGG +   +G P +    
Sbjct: 1   MYAIIKTGGKQYKVEEGDVIKVEKLDAEP--GDKVEFDEVLMVGGGEEVKIGAPYVEGAK 58

Query: 269 VNVTGTIIEKDLSHTR----TNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
             VT  ++E    H R      F+   RK + + +  R   T ++I  I
Sbjct: 59  --VTAEVVE----HGRGKKVIIFKYKRRKNYRKKQGHRQPYTRVKITGI 101

Length = 103

>gnl|CDD|237034 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion protein; Provisional

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGL 268
           +FA+I   G+Q KV   D++ V+  +     G+ ++F +VL++G  D   VG P +    
Sbjct: 1   MFAVIKTGGKQYKVQAGDLLRVEKLAAEA--GETVQFGEVLMLGEGDNVTVGAPFVDGAA 58

Query: 269 VNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           V     +IE+       +F+K  R+   R +  R  LT++RI EI
Sbjct: 59  V--QAEVIEQIKGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEI 101

Length = 221

>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           +AI+ + G+Q KV     + ++    AP  GD ++F+KVL+V       +G+P +    V
Sbjct: 1   YAIVEIGGKQYKVEEGQTVRIEKLDAAP--GDTVEFDKVLMVNKGGDVKIGKPYVEGAKV 58

Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
                + +         ++   RK   + +  R   T +++ +I
Sbjct: 59  --VAEVEKHGRGKKVKVYKYRRRKHSRKKQGHRQPYTKVKVTKI 100

Eubacterial and chloroplast [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 101

>gnl|CDD|177014 CHL00075, rpl21, ribosomal protein L21

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           +AII   G+Q  V P     ++     P  G KI   +VLL+      L+G+P L     
Sbjct: 4   YAIIEAGGKQLWVEPGRFYDINHFPLEP--GTKILLNRVLLIRNESEILIGKPWLEN--A 59

Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEK 318
            V G I+        T ++  P+K+  + +  R +LT   I+ I    K
Sbjct: 60  TVKGRILHHFRGKKITVYKMRPKKKTRKKQGHRQKLTRFLIDSISFNGK 108

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
CHL00075	108	rpl21 ribosomal protein L21	100.0
PRK05573	103	rplU 50S ribosomal protein L21; Validated	100.0
TIGR00061	101	L21 ribosomal protein L21. Eubacterial and chlorop	100.0
COG0261	103	RplU Ribosomal protein L21 [Translation, ribosomal	100.0
PRK12278	221	50S ribosomal protein L21/unknown domain fusion pr	100.0
PF00829	96	Ribosomal_L21p: Ribosomal prokaryotic L21 protein;	100.0
KOG1686|consensus	151		99.93
KOG1686|consensus	151		91.04

>CHL00075 rpl21 ribosomal protein L21

Probab=100.00  E-value=1.1e-38  Score=269.37  Aligned_cols=107  Identities=28%  Similarity=0.406  Sum_probs=103.5

Q ss_pred             ceEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEE
Q psy1265         208 RLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNF  287 (384)
Q Consensus       208 ~MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVF  287 (384)
                      .|||||++|||||||++||+|.||+  +++++||.|.|++|||+++++.+.+|+|||++  |+|+|+|+||++++|+++|
T Consensus         2 ~myAIi~~gGkQykV~~Gd~i~vek--l~~~~G~~i~l~~VL~~~~~~~~~iG~P~v~~--a~V~a~V~~h~r~~Ki~vf   77 (108)
T CHL00075          2 MTYAIIEAGGKQLWVEPGRFYDINH--FPLEPGTKILLNRVLLIRNESEILIGKPWLEN--ATVKGRILHHFRGKKITVY   77 (108)
T ss_pred             cEEEEEEECCEEEEEeCCCEEEEEE--cCCCCCCEEEEEEEEEEecCCCeEECCcEecC--cEEEEEEEeecCCCCEEEE
Confidence            5999999999999999999999999  78999999999999999999899999999999  8999999999999999999


Q ss_pred             EeCCCCCcccccCccCcceEEEEeEEEeccc
Q psy1265         288 RKIPRKRHTRFRFFRTQLTMIRINEIEIIEK  318 (384)
Q Consensus       288 KkKRRKrYRRk~GHRQ~yTrLRIteI~l~gk  318 (384)
                      ||||||+|+|++||||+||+|+|++|..+++
T Consensus        78 K~krRK~yrrk~GHRQ~~T~i~I~~I~~~g~  108 (108)
T CHL00075         78 KMRPKKKTRKKQGHRQKLTRFLIDSISFNGK  108 (108)
T ss_pred             EeCCCCCccCCCccCCCcEEEEEEEEEcCCC
Confidence            9999999999999999999999999998763

>PRK05573 rplU 50S ribosomal protein L21; Validated

Probab=100.00  E-value=4.7e-38  Score=262.77  Aligned_cols=102  Identities=30%  Similarity=0.495  Sum_probs=100.1

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||++||+||||++||+|.||+  +++++||.|.|++|||+++++++.+|+|+|++  |+|+|+|++|++++|+++||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~--l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~--a~V~A~V~~~~k~~Ki~vfK   76 (103)
T PRK05573          1 MYAIIKTGGKQYKVEEGDVIKVEK--LDAEVGDTVEFDEVLLVGGGEEVKIGAPYVEG--AKVTAEVVEHGRGKKVIVFK   76 (103)
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcc--cCCCCCCEEEEeEEEEEeCCCCEEECCeEcCC--CEEEEEEEeccCCCcEEEEE
Confidence            899999999999999999999999  68999999999999999999999999999999  89999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEEEEeEEE
Q psy1265         289 KIPRKRHTRFRFFRTQLTMIRINEIE  314 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrLRIteI~  314 (384)
                      |||||+|+|++||||++|+|+|++|.
T Consensus        77 ~krRK~y~r~~GHRQ~~T~i~I~~I~  102 (103)
T PRK05573         77 YKRRKNYRKKQGHRQPYTKVKITSIN  102 (103)
T ss_pred             EcCCCCccccCCccCCcEEEEEEEEe
Confidence            99999999999999999999999996

>TIGR00061 L21 ribosomal protein L21

Probab=100.00  E-value=5.6e-37  Score=256.06  Aligned_cols=101  Identities=21%  Similarity=0.393  Sum_probs=98.6

Q ss_pred             EEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEEe
Q psy1265         210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRK  289 (384)
Q Consensus       210 YAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFKk  289 (384)
                      ||||++||+||||++||+|.||+  +++++||.|.|++|||+++++++.+|+|+|++  |+|+|+|++|++++|+++|||
T Consensus         1 yAIi~~gGkQykV~~Gd~i~Ve~--l~~~~G~~i~l~~VLlv~~~~~~~iG~P~l~~--a~V~a~V~~~~r~~Ki~vfK~   76 (101)
T TIGR00061         1 YAIVEIGGKQYKVEEGQTVRIEK--LDAAPGDTVEFDKVLMVNKGGDVKIGKPYVEG--AKVVAEVEKHGRGKKVKVYKY   76 (101)
T ss_pred             CEEEEECCEEEEEeCCCEEEEcc--cCCCCCCEEEEEEEEEEecCCCeEECCeEcCC--CEEEEEEEeecCCCCEEEEEe
Confidence            89999999999999999999999  78999999999999999999999999999999  799999999999999999999


Q ss_pred             CCCCCcccccCccCcceEEEEeEEE
Q psy1265         290 IPRKRHTRFRFFRTQLTMIRINEIE  314 (384)
Q Consensus       290 KRRKrYRRk~GHRQ~yTrLRIteI~  314 (384)
                      ||||+|+|++||||+||+|+|++|.
T Consensus        77 krrK~y~r~~GHRQ~~T~i~I~~I~  101 (101)
T TIGR00061        77 RRRKHSRKKQGHRQPYTKVKVTKIV  101 (101)
T ss_pred             CCCCCccCCCccCCCcEEEEEEEeC
Confidence            9999999999999999999999983

Eubacterial and chloroplast.

>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.7e-37  Score=258.29  Aligned_cols=103  Identities=30%  Similarity=0.483  Sum_probs=100.7

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||++|||||+|++||+|.||+  +++++|+.|.|++|||+++++.+.+|+||+++  |.|.|+|++|.|++||++||
T Consensus         1 mYAii~tGGKQykV~~G~~i~vEk--l~~e~g~~v~f~~VL~v~~~~~v~iG~P~v~g--a~V~aeV~~hgr~kKV~i~K   76 (103)
T COG0261           1 MYAIIKTGGKQYKVEEGDVIKVEK--LDAEPGDKVEFDEVLMVGGGEEVKIGAPYVEG--AKVTAEVVEHGRGKKVIIFK   76 (103)
T ss_pred             CeEEEEECCEEEEEecCCEEEEEE--cCCCCCCEEEEEEEEEEcCCCceEECCceecC--cEEEEEEhhhCCCceEEEEE
Confidence            899999999999999999999999  89999999999999999999999999999999  89999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEEEEeEEEe
Q psy1265         289 KIPRKRHTRFRFFRTQLTMIRINEIEI  315 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrLRIteI~l  315 (384)
                      |||||+|+|++||||+||+|+|++|.+
T Consensus        77 ~k~rK~~~rk~GHRQ~yT~vkI~~I~~  103 (103)
T COG0261          77 YKRRKNYRKKQGHRQPYTRVKITGIVA  103 (103)
T ss_pred             eccCcCcccccCcccceEEEEEEEeeC
Confidence            999999999999999999999999963

>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional

Probab=100.00  E-value=2.9e-36  Score=280.58  Aligned_cols=107  Identities=31%  Similarity=0.484  Sum_probs=104.1

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||++|||||||++||+|.||+  +..++||+|.|++|||+++++++.||+|||++  ++|+|+|++|++++||++||
T Consensus         1 MyAVI~~gGKQykV~~Gd~i~Vek--l~~~~G~~i~~~~VL~v~~~~~~~iG~P~v~~--a~V~A~V~~~~kg~Ki~vfK   76 (221)
T PRK12278          1 MFAVIKTGGKQYKVQAGDLLRVEK--LAAEAGETVQFGEVLMLGEGDNVTVGAPFVDG--AAVQAEVIEQIKGDKVIHFK   76 (221)
T ss_pred             CEEEEEeCCEEEEEeCCCEEEEec--cCCCCCCEEEEeEEEEEecCCCeEECCeEecC--CEEEEEEEeecCCCCEEEEE
Confidence            999999999999999999999999  78999999999999999999999999999999  79999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEEEEeEEEecccc
Q psy1265         289 KIPRKRHTRFRFFRTQLTMIRINEIEIIEKV  319 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrLRIteI~l~gkv  319 (384)
                      |||||+|+|++||||+||+|||++|..+|..
T Consensus        77 ~krRK~yrrk~GHRQ~~T~i~I~~I~~~g~~  107 (221)
T PRK12278         77 KRRRQSSRRTKGHRQLLTLVRITEILASGAD  107 (221)
T ss_pred             eCCCCCcccCCCcCCCcEEEEEEEEEcCCcc
Confidence            9999999999999999999999999998864

>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.8e-36  Score=247.95  Aligned_cols=96  Identities=41%  Similarity=0.607  Sum_probs=93.4

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||+++|+||||++||+|.||+  +++++||+|.|++||++++++++.+|+|||++  |+|+|+|++|++++|+++||
T Consensus         1 myAIi~~ggkQykV~~gd~i~v~~--l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~--a~V~a~V~~~~k~~Ki~v~K   76 (96)
T PF00829_consen    1 MYAIIEIGGKQYKVEEGDVIDVER--LDAEVGDKIELDKVLLIGSEDFTLIGRPYLEG--AKVEATVLEHGKGKKIIVFK   76 (96)
T ss_dssp             -EEEEESSSEEEEESSSEEEEEES--TSSSTTSEEEETTEEEEETSSSTCSSSSSSSS--SEEEEEEEEEEEEEEEEEEE
T ss_pred             CEEEEEECCEEEEEeCCCEEEECC--cCcCCCCEEEEEEEEEEecCCCeEECCccCCC--cEEEEEEEeccCCCcEEEEE
Confidence            899999999999999999999998  59999999999999999999999999999999  89999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEE
Q psy1265         289 KIPRKRHTRFRFFRTQLTMI  308 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrL  308 (384)
                      |||||+|+|++||||+||+|
T Consensus        77 ~krRK~y~r~~GhRq~~T~i   96 (96)
T PF00829_consen   77 KKRRKRYRRKQGHRQPYTRI   96 (96)
T ss_dssp             EETTTTEEEEEEEEEEEEEE
T ss_pred             ECCccccccCCccCCCeEEC
Confidence            99999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....

>KOG1686|consensus

Probab=99.93  E-value=1.8e-25  Score=197.91  Aligned_cols=129  Identities=29%  Similarity=0.296  Sum_probs=118.0

Q ss_pred             hcCcccccccCCCchhHHHHHHHHHHhcCCCceEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCc
Q psy1265         177 TKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADF  256 (384)
Q Consensus       177 a~~~~~v~~PL~~s~~vle~Vn~~I~~~~~~~MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~  256 (384)
                      +...+.++++|++....         +..+++.||||.+||+||||..||.|+.++ +.+++++|+|.|++|||+|+.++
T Consensus         3 ~~~e~v~vg~l~s~~~~---------~~kr~~~favv~v~srq~kvs~gd~iy~eg-~~p~nv~d~i~l~kVlLvg~~~~   72 (151)
T KOG1686|consen    3 ASSETVTVGRLASACSH---------SIKRPSGFAVVSVGSRQRKVSSGDTIYTEG-LKPKNVLDSIPLPKVLLVGPVEE   72 (151)
T ss_pred             ccceeEEEeccchhhhh---------ccccCCccEEEEEcceeEEecCCCeeeecC-ccccccccccccceEEEecCcce
Confidence            44455667888876442         246789999999999999999999999999 78999999999999999999999


Q ss_pred             eEEcccccCCceeEEEEEEEeeecCCeeEEEEeCCCCCcccccCccCcceEEEEeEEEecc
Q psy1265         257 TLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIE  317 (384)
Q Consensus       257 TlIGrPyLega~AkVeAtVVEh~KgkKViVFKkKRRKrYRRk~GHRQ~yTrLRIteI~l~g  317 (384)
                      |.+|+|.|+.  |+|.|.|+|+....|+++||+|++|.|+|.+||||..|+|||++|....
T Consensus        73 T~~grpvv~~--vtv~aVv~e~g~~~kvvhfk~k~~k~tr~~~~~~qe~t~LrIt~it~ie  131 (151)
T KOG1686|consen   73 TRIGRPVVKK--VTVHAVVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELRITCITGIE  131 (151)
T ss_pred             eEecCccccc--ceEEEEeeeccccccEEEEEecchhhhhhhhcccCcccEEEEeeeeeee
Confidence            9999999999  8999999999999999999999999999999999999999999998755

>KOG1686|consensus

Probab=91.04  E-value=0.03  Score=51.05  Aligned_cols=84  Identities=33%  Similarity=0.385  Sum_probs=65.9

Q ss_pred             CCchhhhcCcccccccCCCchhHHHHHHHHHHhcCCCceEEEEEECCEEEEEccCCEEEEcC-CCCCCCCCCeEEeceEE
Q psy1265         171 PSSSEFTKGTEIVSTKLSSVPVYLNLVNNQIERNEQGRLFAIIHVLGRQTKVTPNDIIIVDS-NSFAPLNGDKIKFEKVL  249 (384)
Q Consensus       171 ps~~efa~~~~~v~~PL~~s~~vle~Vn~~I~~~~~~~MYAIVeIGGKQYKVt~GDvI~VEr-~ll~aevGDkI~LdKVL  249 (384)
                      +.+.+|+-++          +.++.+++-++--.+++..|++++...+|+|++.-|..-..- +.++...++-|++.+++
T Consensus        67 vg~~~~T~~g----------rpvv~~vtv~aVv~e~g~~~kvvhfk~k~~k~tr~~~~~~qe~t~LrIt~it~ie~e~~~  136 (151)
T KOG1686|consen   67 VGPVEETRIG----------RPVVKKVTVHAVVEEYGLLFKVVHFKSKQWKVTRRDLGHRQEATELRITCITGIELEKVL  136 (151)
T ss_pred             ecCcceeEec----------CcccccceEEEEeeeccccccEEEEEecchhhhhhhhcccCcccEEEEeeeeeeeeccce
Confidence            5566677666          455555555554456789999999999999999998887662 12566789999999999


Q ss_pred             EEeCCCceEEccccc
Q psy1265         250 LVGGADFTLVGRPLL  264 (384)
Q Consensus       250 LVGs~d~TlIGrPyL  264 (384)
                      +++..+|+.+|.|.+
T Consensus       137 ~v~~~nf~~vgk~~l  151 (151)
T KOG1686|consen  137 LVGAPNFTAVGKPLL  151 (151)
T ss_pred             eccCccceeeccccC
Confidence            999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	4e-14
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	4e-13
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	1e-12
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	6e-12

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ... Length = 103

 Score = 66.8 bits (164), Expect = 4e-14
 Identities = 20/109 (18%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           +A+    G+Q +V+    + ++    A   G+ ++F +VL++   +   +G P +  G  
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLDIAT--GETVEFAEVLMIANGEEVKIGVPFV-DG-G 57

Query: 270 NVTGTIIEKDLSHTR----TNFRKIPRKRHTRFRFFRTQLTMIRINEIE 314
            +   ++     H R       +   RK + + +  R   T ++I  I 
Sbjct: 58  VIKAEVVA----HGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS 102

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257

 Score = 67.8 bits (165), Expect = 4e-13
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           FA++ +  RQ  V P   I       A    DKI   KVLLVG    T +G P++     
Sbjct: 125 FAVVVIGSRQYIVIPGRWIYTQRLKGAT-VNDKIVLNKVLLVGTKASTYIGTPIV-TN-A 181

Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEIE 314
            V   + E+ L      F+   +K + R    R  +T I+I  I 
Sbjct: 182 AVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGIT 226

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ... Length = 101

 Score = 62.9 bits (154), Expect = 1e-12
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 14/109 (12%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           FAI+   G+Q +V P   + V+     P  G  ++   +LL G  + T+VG P++  G  
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLDAEP--GATVELPVLLLGG--EKTVVGTPVV-EG-A 55

Query: 270 NVTGTIIEKDLSHTR----TNFRKIPRKRHTRFRFFRTQLTMIRINEIE 314
           +V   ++     H R       +   + ++ R +  R   T + I EI 
Sbjct: 56  SVVAEVLG----HGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEIR 100

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ... Length = 100

 Score = 60.6 bits (148), Expect = 6e-12
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           FAII   G+Q +V+  D+I V+S       GDK++ + + + G      V          
Sbjct: 2   FAIIQTGGKQYRVSEGDVIRVESLQGEA--GDKVELKALFVGGE---QTVFGEDA-GK-Y 54

Query: 270 NVTGTIIEKDLSHTR----TNFRKIPRKRHTRFRFFRTQLTMIRINEIE 314
            V   ++E    H R       +     ++ R    R   T I+I  I+
Sbjct: 55  TVQAEVVE----HGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGIQ 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
3r8s_R	103	50S ribosomal protein L21; protein biosynthesis, R	100.0
3v2d_V	101	50S ribosomal protein L21; ribosome associated inh	100.0
2zjr_O	100	50S ribosomal protein L21; ribosome, large ribosom	100.0
3bbo_T	257	Ribosomal protein L21; large ribosomal subunit, sp	100.0

>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...

Probab=100.00  E-value=1.7e-39  Score=270.82  Aligned_cols=102  Identities=16%  Similarity=0.325  Sum_probs=100.2

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||++|||||||++||+|.||+  +++++||+|.|++|||+++++++.+|+|+|++  |+|+|+|++|++++|+++||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vek--l~~~~G~~v~~~~VLlv~~~~~~~iG~P~v~~--a~V~a~V~~~~k~~Kv~vfK   76 (103)
T 3r8s_R            1 MYAVFQSGGKQHRVSEGQTVRLEK--LDIATGETVEFAEVLMIANGEEVKIGVPFVDG--GVIKAEVVAHGRGEKVKIVK   76 (103)
T ss_dssp             CEEEEECSSSEEEEETTCEEEESC--CCSCTTCEEEECCEEEEESSSEEECSSSSCTT--CEEEEEEEEEEECCCEEEEE
T ss_pred             CEEEEEECCEEEEEeCCCEEEECC--cCCCCCCEEEEeEEEEEecCCCEEECCcccCC--cEEEEEEEeccCCCcEEEEE
Confidence            999999999999999999999999  78999999999999999999999999999999  89999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEEEEeEEE
Q psy1265         289 KIPRKRHTRFRFFRTQLTMIRINEIE  314 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrLRIteI~  314 (384)
                      |||||+|+|++||||+||+|+|++|.
T Consensus        77 ~krrK~yrrk~GHRQ~~T~l~I~~I~  102 (103)
T 3r8s_R           77 FRRRKHYRKQQGHRQWFTDVKITGIS  102 (103)
T ss_dssp             EETTTTEEEEEEECCEEEEEEEEEEE
T ss_pred             ecCCCCccCCCcccCCeEEEEEEEEE
Confidence            99999999999999999999999996

>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...

Probab=100.00  E-value=2.3e-38  Score=263.52  Aligned_cols=100  Identities=25%  Similarity=0.391  Sum_probs=96.9

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||++|||||||++||+|.||+  +++++||+|.|+ |||+++++ +.+|+|+|++  |+|+|+|++|++++|+++||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~vek--l~~~~G~~v~~~-VLlv~~~~-~~iG~P~v~~--a~V~a~V~~~~k~~Kv~vfK   74 (101)
T 3v2d_V            1 MFAIVKTGGKQYRVEPGLKLRVEK--LDAEPGATVELP-VLLLGGEK-TVVGTPVVEG--ASVVAEVLGHGRGKKILVSK   74 (101)
T ss_dssp             CEEEEEETTEEEEECTTCEEEESC--CSCCTTCEEEEC-EEEEESSS-CEECSSSCSS--CCEEEEEEEEEECCCEEEEE
T ss_pred             CEEEEEeCCEEEEEeCCCEEEECC--cCCCCCCEEEEE-EEEECCCc-eEECCcccCC--CEEEEEEeeccCCCcEEEEE
Confidence            999999999999999999999999  789999999999 99999666 8999999999  89999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEEEEeEEE
Q psy1265         289 KIPRKRHTRFRFFRTQLTMIRINEIE  314 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrLRIteI~  314 (384)
                      |||||+|+|++||||+||+|+|++|.
T Consensus        75 ~krrK~yrrk~GHRQ~~T~l~I~~I~  100 (101)
T 3v2d_V           75 FKAKVQYRRKKGHRQPYTELLIKEIR  100 (101)
T ss_dssp             EETTTTEEEEEEECCEEEEEEEEEEC
T ss_pred             ECCCCCcCCCCcccCCeEEEEEEEEe
Confidence            99999999999999999999999995

>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...

Probab=100.00  E-value=5.1e-38  Score=260.74  Aligned_cols=99  Identities=28%  Similarity=0.396  Sum_probs=92.2

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||++|||||||++||+|.||+  +++++||+|.|+ |||+++ +++.+|+| |++  |+|+|+|+||++++|+++||
T Consensus         1 myAIi~~gGkQykV~~Gd~i~vek--l~~~~G~~v~~~-VLlv~~-~~~~iG~P-v~~--a~V~a~V~~~~k~~Kv~vfK   73 (100)
T 2zjr_O            1 MFAIIQTGGKQYRVSEGDVIRVES--LQGEAGDKVELK-ALFVGG-EQTVFGED-AGK--YTVQAEVVEHGRGKKIYIRK   73 (100)
T ss_dssp             ----CCSSCCSCCSCCEEEEECCS--CCSSCCEEEECC-SCEETT-SCEECSST-TTT--SCEEEEEEECCBCCCEEEEE
T ss_pred             CEEEEEECCEEEEEeCCCEEEEcc--cCCCCCCEEEEE-EEEEcC-CCeEECCc-CCC--CEEEEEEEeecCCCcEEEEE
Confidence            899999999999999999999999  789999999999 999999 89999999 999  89999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEEEEeEEE
Q psy1265         289 KIPRKRHTRFRFFRTQLTMIRINEIE  314 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrLRIteI~  314 (384)
                      |||||+|+|++||||+||+|+|++|.
T Consensus        74 ~krrK~yrrk~GHRQ~~T~l~I~~I~   99 (100)
T 2zjr_O           74 YKSGVQYRRRTGHRQNFTAIKILGIQ   99 (100)
T ss_dssp             ECSSSCCEEEEEECCBEEEEECCCC-
T ss_pred             ECCCCCCcCCCCccCCcEEEEEEEEE
Confidence            99999999999999999999999986

>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1e-38  Score=300.66  Aligned_cols=136  Identities=24%  Similarity=0.237  Sum_probs=101.0

Q ss_pred             cCCCceEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCe
Q psy1265         204 NEQGRLFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHT  283 (384)
Q Consensus       204 ~~~~~MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkK  283 (384)
                      ...++|||||++|||||||++||+|.||+ +.++++||+|.|++|||+|+++++++|+|||++  ++|+|+|++|+|++|
T Consensus       119 k~~~~MYAIIetGGKQYKV~~GD~I~VEK-L~~aevGd~V~LdkVLlVg~~d~t~VG~P~V~g--AkV~AtVveh~KgkK  195 (257)
T 3bbo_T          119 PREEIIFAVVVIGSRQYIVIPGRWIYTQR-LKGATVNDKIVLNKVLLVGTKASTYIGTPIVTN--AAVHAVVEEQLLDDK  195 (257)
T ss_dssp             -----CCCCCCSSSCCCCCCTTCCCCCCC-CTTSCTTCEEECTTCCCBCSSSCBCCSSSSCSS--CCCEEECCCCCCCSC
T ss_pred             CcCCCeEEEEEECCEEEEEeCCCEEEEeC-CCCCCCCCEEEEEEEEEEeCCCCeEeCCcccCC--CEEEEEEEeecCCCc
Confidence            44567999999999999999999999998 334899999999999999999999999999999  789999999999999


Q ss_pred             eEEEEeCCCCCcccccCccCcceEEEEeEEEeccccCCccccccchhhhccccHHHHHHHHHh
Q psy1265         284 RTNFRKIPRKRHTRFRFFRTQLTMIRINEIEIIEKVGQRKDVEGTQRLINLCLQTQYNLILEN  346 (384)
Q Consensus       284 ViVFKkKRRKrYRRk~GHRQ~yTrLRIteI~l~gkv~~~~e~~~~~r~~dL~~~aEL~~mar~  346 (384)
                      |++|||||||+|||++||||+||+|||++|.+.++....+...    -.++.+.+|+++-|+.
T Consensus       196 IiVFK~KRRK~yRRk~GHRQ~~T~LrI~~I~~~g~~~~~~~~~----~~~~~~~~~~~a~a~~  254 (257)
T 3bbo_T          196 VIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA----EVEAKEEAEAEAEAEA  254 (257)
T ss_dssp             CCEEECCTTTTCCEEECCCCCCCCCCCCCCCC-------------------------------
T ss_pred             EEEEEeCCCCCCcCCCCccCCcEEEEEEEEEcCCCCccccccc----ccCcccccchhccccc
Confidence            9999999999999999999999999999999988664433222    2355566666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d2qamr1	103	b.155.1.1 (R:1-103) Ribosomal protein L21p {Escher	1e-18
d2j01v1	101	b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermu	2e-14
d2zjro1	94	b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinoco	1e-11

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]} Length = 103

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

 Score = 78.3 bits (193), Expect = 1e-18
 Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           +A+    G+Q +V+    + ++    A   G+ ++F +VL++   +   +G P +     
Sbjct: 2   YAVFQSGGKQHRVSEGQTVRLEKLDIAT--GETVEFAEVLMIANGEEVKIGVPFVDG--G 57

Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
            +   ++           +   RK + + +  R   T ++I  I
Sbjct: 58  VIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGI 101

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]} Length = 101

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 210 FAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLV 269
           FAI+   G+Q +V P   + V+     P  G  ++   +LL G  + T+VG P++     
Sbjct: 2   FAIVKTGGKQYRVEPGLKLRVEKLDAEP--GATVELPVLLLGG--EKTVVGTPVVEG--A 55

Query: 270 NVTGTIIEKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           +V   ++           +   + ++ R +  R   T + I EI
Sbjct: 56  SVVAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLIKEI 99

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]} Length = 94

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 217 GRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTII 276
           G+Q +V+  D+I V+S       GDK++ + + +  G + T+ G      G   V   ++
Sbjct: 5   GKQYRVSEGDVIRVESLQGEA--GDKVELKALFV--GGEQTVFGED---AGKYTVQAEVV 57

Query: 277 EKDLSHTRTNFRKIPRKRHTRFRFFRTQLTMIRINEI 313
           E          +     ++ R    R   T I+I  I
Sbjct: 58  EHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKILGI 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2qamr1	103	Ribosomal protein L21p {Escherichia coli [TaxId: 5	100.0
d2j01v1	101	Ribosomal protein L21p {Thermus thermophilus [TaxI	100.0
d2zjro1	94	Ribosomal protein L21p {Deinococcus radiodurans [T	99.97

>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-38  Score=262.87  Aligned_cols=102  Identities=16%  Similarity=0.325  Sum_probs=99.9

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||++|||||||++||+|.||+  +++++||+|.|++|||+++++++.+|+|+|++  |+|+|+|++|.+++|+++||
T Consensus         1 MyAIi~~gGkQykV~~Gd~i~v~~--l~~~~G~~i~~~~VLlv~~~~~~~iG~P~l~~--a~V~a~V~~~~k~~Ki~vfK   76 (103)
T d2qamr1           1 MYAVFQSGGKQHRVSEGQTVRLEK--LDIATGETVEFAEVLMIANGEEVKIGVPFVDG--GVIKAEVVAHGRGEKVKIVK   76 (103)
T ss_dssp             CCCCCCSSSSCCCCCSSCCEEESC--CCCCTTCEEEECCCSCCCSSSCCCCSSSSCSS--CCEEEEEEEEECCCCEEEEE
T ss_pred             CEEEEEECCEEEEEcCCCEEEEec--cCCCCCCcEEehhheEcCCCCcEEeCCCcccc--cEEEEEEeeecCCccEEEEE
Confidence            999999999999999999999998  78999999999999999999999999999999  89999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEEEEeEEE
Q psy1265         289 KIPRKRHTRFRFFRTQLTMIRINEIE  314 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrLRIteI~  314 (384)
                      |||||+|+|++||||+||+|+|++|.
T Consensus        77 ~krrk~yrr~~GHRQ~~T~i~I~~I~  102 (103)
T d2qamr1          77 FRRRKHYRKQQGHRQWFTDVKITGIS  102 (103)
T ss_dssp             ECTTSSCEEEEEECCCEEEECCCCCC
T ss_pred             ecCCCcccccCcccCCeEEEEEEEEe
Confidence            99999999999999999999999985

>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.7e-36  Score=247.45  Aligned_cols=100  Identities=24%  Similarity=0.370  Sum_probs=93.5

Q ss_pred             eEEEEEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEE
Q psy1265         209 LFAIIHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFR  288 (384)
Q Consensus       209 MYAIVeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFK  288 (384)
                      |||||++|||||||++||.|.||+  +++++|+.|.|+.||+ ++ +.+.+|+|+|++  |+|+|+|++|++++|+++||
T Consensus         1 MyAVi~~gGkQykV~~Gd~l~v~~--l~~~~g~~v~~~~ll~-~~-~~~~iG~P~l~~--a~V~a~V~~~~k~~Kv~vfK   74 (101)
T d2j01v1           1 MFAIVKTGGKQYRVEPGLKLRVEK--LDAEPGATVELPVLLL-GG-EKTVVGTPVVEG--ASVVAEVLGHGRGKKILVSK   74 (101)
T ss_dssp             CCCEEEETTEEEECCSSCCCCCCC--CSCCSSSCCBCCCCSC-CC-SSTTCCCCCGGG--CSSCCCCEECCCCCCCCCCC
T ss_pred             CEEEEEECCEEEEEcCCCEEEEec--ccCCCCccEEEEEEEE-cC-CceeeCCcccCC--cEEEEEEEEecCCCcEEEEE
Confidence            999999999999999999999998  7999999999995554 43 456799999999  78999999999999999999


Q ss_pred             eCCCCCcccccCccCcceEEEEeEEE
Q psy1265         289 KIPRKRHTRFRFFRTQLTMIRINEIE  314 (384)
Q Consensus       289 kKRRKrYRRk~GHRQ~yTrLRIteI~  314 (384)
                      |||||+|+|++||||+||+|+|++|.
T Consensus        75 ~krRK~y~R~~GHRQ~~T~l~I~~I~  100 (101)
T d2j01v1          75 FKAKVQYRRKKGHRQPYTELLIKEIR  100 (101)
T ss_dssp             CCEECCCCEECCCCCCCCCCCCEECC
T ss_pred             EcCcCCcccCCcccCCeEEEEEEEee
Confidence            99999999999999999999999985

>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: L21p-like
superfamily: L21p-like
family: Ribosomal protein L21p
domain: Ribosomal protein L21p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=5.6e-32  Score=219.99  Aligned_cols=94  Identities=24%  Similarity=0.284  Sum_probs=85.2

Q ss_pred             EEECCEEEEEccCCEEEEcCCCCCCCCCCeEEeceEEEEeCCCceEEcccccCCceeEEEEEEEeeecCCeeEEEEeCCC
Q psy1265         213 IHVLGRQTKVTPNDIIIVDSNSFAPLNGDKIKFEKVLLVGGADFTLVGRPLLTPGLVNVTGTIIEKDLSHTRTNFRKIPR  292 (384)
Q Consensus       213 VeIGGKQYKVt~GDvI~VEr~ll~aevGDkI~LdKVLLVGs~d~TlIGrPyLega~AkVeAtVVEh~KgkKViVFKkKRR  292 (384)
                      |++|||||||++||+|.||+  +++++||.|.|+.||+ ++ +.+ +|.|++.+  |+|+|+|++|++++|+++||||||
T Consensus         1 I~tGGKQykV~~Gd~i~vek--l~~~~G~~i~~~~vl~-~g-~~~-~~g~~l~~--a~V~a~V~~~~r~~Ki~vfK~krr   73 (94)
T d2zjro1           1 IQTGGKQYRVSEGDVIRVES--LQGEAGDKVELKALFV-GG-EQT-VFGEDAGK--YTVQAEVVEHGRGKKIYIRKYKSG   73 (94)
T ss_dssp             CCSSCCSCCSCCEEEEECCS--CCSSCCEEEECCSCEE-TT-SCE-ECSSTTTT--SCEEEEEEECCBCCCEEEEEECSS
T ss_pred             CccCCEEEEEcCCCEEEEec--ccCccCCceEEeeeEE-cc-ccc-ccCCCCce--eEEEEEEEEeccCCceEEEEEcCC
Confidence            57899999999999999999  7899999999998877 33 445 45566888  789999999999999999999999


Q ss_pred             CCcccccCccCcceEEEEeEE
Q psy1265         293 KRHTRFRFFRTQLTMIRINEI  313 (384)
Q Consensus       293 KrYRRk~GHRQ~yTrLRIteI  313 (384)
                      |+|+|++||||+||+|+|++|
T Consensus        74 K~yrRk~GHRQ~~T~vkI~~I   94 (94)
T d2zjro1          74 VQYRRRTGHRQNFTAIKILGI   94 (94)
T ss_dssp             SCCEEEEEECCBEEEEECCCC
T ss_pred             CCccccCCccCCcEEEEEEEC
Confidence            999999999999999999986