Psyllid ID: psy12682

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-----
MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGGSAGDAKSTEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVITDPMSTHLISRLCIQRDIGYYDFSIRH
cccEEEEccEEEEEEcccccccccccEEEEEccccccccccHHHHHHHEEcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHcccccccccccccHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHccccccccEEEEEcccccHHHHHHHHHHHcccccccccEEcccccHHHHHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcccccccccccEEEcccccccccHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHccccccccccEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccccHHHHHHHccHHHHHccccccEEEEEEEEEc
cccHEEcccEEEEEEcccEEEEcccEEEEEEEccccccccccEEEEEEEEHHcEccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccHHcHHHHHHHHccHHHcccHHHHHHcHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHccccccccEEEEEcccccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHccEEEcccccccHHHHHHHHHHccccccHHHHcccccccHHccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccHHHHHHHHHHHHHccccHHHEEEccEEEEEEEEEc
mkqifksgagwsiklGDTVIEYNDNFKFYIttklrnphylpeIAVKVTLLNFMITPVGLADQLLgtvvakdrpdleaeKNQLIVQGADNKRQLKEIEDKILQILSssegniledeSAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARleytpiaaHSTVLFFCIAnlgnidpmyqyslvwFDNLYRMAIdntekadnvpqriedlsgYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTggvgldnphknpttwmVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIydaqqpqdaplpqpwqdKLDVFQKLCVLRCIRFDKVVPAIQNFvihdlgqkfvepppfdivssyndsvctvpliflltpgadptAVLLKFAddmgfggskfsalslgqgqgpIAVKLINdglkkgdwVLLQNCHLAKSWMPVLEKMCeslspetthpdfrlwltsypsnlfpvsvlqngvkitneppkglraninrsylsdpisnpefynscqqPERFRKLLFNLCFFHALILERikfgplgwniqYQFNETDLKISLVQLKMFLDQYseaggsagdakstEDLIIRVTSDilqklppnfntvqalekyptmysQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVgkipgawakksypslkplgsYVQDFLHRLEFLQHIMVIITYqsgspefdvkthqsgqwfTKHIEVVITDPMSTHLISRLCIQrdigyydfsirh
mkqifksgagwsiklgDTVIEYNDNFKFYITtklrnphyLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLeaeknqlivqgadnkrqLKEIEDKILQILSssegnileDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNtekadnvpqriEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKitneppkglraNINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAggsagdakstEDLIIRVTsdilqklppnFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVITDPMSTHLISRLCIQRDIGYYDFSIRH
MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYdaqqpqdaplpqpwqdKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGGSAGDAKSTEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVITDPMSTHLISRLCIQRDIGYYDFSIRH
****FKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKD***********I***************KILQI************************************VTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDA*********QPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITN*****LRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSE***********EDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVITDPMSTHLISRLCIQRDIGYYDFSI**
MKQIFK*GAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAID********PQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGGSAGDAKSTEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVITDPMSTHLISRLCIQRDIGYYDFSIRH
MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSE*********STEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVITDPMSTHLISRLCIQRDIGYYDFSIRH
MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGGSAGDAKSTEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVITDPMSTHLISRLCIQRDIGYYDFSIRH
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRFKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGGSAGDAKSTEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNSLIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQSGSPEFDVKTHQSGQWFTKHIEVVITDPMSTHLISRLCIQRDIGYYDFSIRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query755 2.2.26 [Sep-21-2011]
Q63170 4057 Dynein heavy chain 7, axo yes N/A 0.797 0.148 0.626 0.0
Q8WXX0 4024 Dynein heavy chain 7, axo yes N/A 0.797 0.149 0.620 0.0
Q8BW94 4083 Dynein heavy chain 3, axo no N/A 0.762 0.141 0.587 0.0
Q8TD57 4116 Dynein heavy chain 3, axo no N/A 0.761 0.139 0.570 0.0
Q9P2D7 4330 Dynein heavy chain 1, axo no N/A 0.785 0.136 0.485 1e-171
Q63164 4516 Dynein heavy chain 1, axo no N/A 0.785 0.131 0.478 1e-169
Q9P225 4427 Dynein heavy chain 2, axo no N/A 0.806 0.137 0.410 1e-148
P0C6F1 4456 Dynein heavy chain 2, axo no N/A 0.757 0.128 0.424 1e-147
Q9C0G6 4158 Dynein heavy chain 6, axo no N/A 0.753 0.136 0.424 1e-141
Q9MBF8 4513 Dynein-1-beta heavy chain N/A N/A 0.756 0.126 0.430 1e-140
>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2 SV=2 Back     alignment and function desciption
 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/611 (62%), Positives = 471/611 (77%), Gaps = 9/611 (1%)

Query: 1    MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLA 60
            +KQ FK G    I+LGD+ IEY  +F+FYITTKLRNPHYLPE +VKVTLLNFMITP G+ 
Sbjct: 3085 LKQTFKQGGSTCIRLGDSTIEYAPDFRFYITTKLRNPHYLPETSVKVTLLNFMITPEGMQ 3144

Query: 61   DQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQV 120
            DQLLG VVA++RPDLE EK  LI+QGA+NKRQLKEIEDKIL++LSSSEGNILEDE+AI++
Sbjct: 3145 DQLLGIVVARERPDLEEEKQALILQGAENKRQLKEIEDKILEVLSSSEGNILEDETAIKI 3204

Query: 121  LSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSL 180
            LSSSK L+NEI +KQ VAE TEK ID  R+ Y PIA HS++LFF IA+L NI+PMYQYSL
Sbjct: 3205 LSSSKALANEISQKQEVAEETEKKIDNTRMGYRPIAVHSSILFFSIADLANIEPMYQYSL 3264

Query: 181  VWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLR 240
             WF NL+ ++I+N+EK+D + QR+  L  +FTYSLY NICRS+FEKDK+LFS  L VNL 
Sbjct: 3265 TWFINLFILSIENSEKSDILSQRLHILRDHFTYSLYVNICRSLFEKDKMLFSFCLTVNLL 3324

Query: 241  FKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKH 300
                 I+   W FLLTGG+GLDNP+ NP TW+  +SWDE+CRLDEL  FK IR  F    
Sbjct: 3325 IHENAINKAEWRFLLTGGIGLDNPYTNPCTWLPQKSWDEICRLDELHAFKTIRREFMRLK 3384

Query: 301  QEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVE 360
            + WK++YD+ +P     P+ W++K + FQ++ ++RC+R DKV+P +Q F+I  LG+ F+E
Sbjct: 3385 EGWKKVYDSMEPHHEIFPEEWENKANDFQRMLIIRCLRPDKVIPMLQEFIIKKLGRSFIE 3444

Query: 361  PPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIA 420
            PPPFD+  ++ DS C  PLIF+L+PGADP   LLKFADD G+GGSK S+LSLGQGQGPIA
Sbjct: 3445 PPPFDLAKAFGDSNCCAPLIFVLSPGADPMNALLKFADDQGYGGSKLSSLSLGQGQGPIA 3504

Query: 421  VKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVS 480
            +K++   +K G WV+LQNCHLA SWMP LEK+CE LSPE+THPDFR+WLTSYPS  FPVS
Sbjct: 3505 MKMLEKAVKDGTWVVLQNCHLATSWMPTLEKVCEELSPESTHPDFRIWLTSYPSPNFPVS 3564

Query: 481  VLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILE 540
            VLQNGVK+TNE PKGLRANI RSYL DPIS+PEF+ SC++PE F+KLL+ LCFFHAL+ E
Sbjct: 3565 VLQNGVKMTNEAPKGLRANIIRSYLMDPISDPEFFGSCRKPEEFKKLLYGLCFFHALVQE 3624

Query: 541  RIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSE---------AGGSAGDAKSTEDLI 591
            R KFGPLGWNI Y+FNETDL+IS+ QL MFL+QY E          G      + T+D  
Sbjct: 3625 RRKFGPLGWNIPYEFNETDLRISVQQLHMFLNQYEELPYDALRYMTGECNYGGRVTDDWD 3684

Query: 592  IRVTSDILQKL 602
             R    IL K 
Sbjct: 3685 RRTLRSILNKF 3695
Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.
Rattus norvegicus (taxid: 10116)
>sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2 Back     alignment and function description
>sp|Q8BW94|DYH3_MOUSE Dynein heavy chain 3, axonemal OS=Mus musculus GN=Dnah3 PE=1 SV=2 Back     alignment and function description
>sp|Q8TD57|DYH3_HUMAN Dynein heavy chain 3, axonemal OS=Homo sapiens GN=DNAH3 PE=2 SV=1 Back     alignment and function description
>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4 Back     alignment and function description
>sp|Q63164|DYH1_RAT Dynein heavy chain 1, axonemal OS=Rattus norvegicus GN=Dnah1 PE=2 SV=2 Back     alignment and function description
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3 Back     alignment and function description
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1 Back     alignment and function description
>sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal OS=Homo sapiens GN=DNAH6 PE=1 SV=3 Back     alignment and function description
>sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query755
270007962 3983 hypothetical protein TcasGA2_TC014710 [T 0.796 0.150 0.670 0.0
242021167 3956 ciliary dynein heavy chain, putative [Pe 0.796 0.151 0.666 0.0
390337183 4010 PREDICTED: dynein heavy chain 7, axonema 0.749 0.141 0.670 0.0
291391949 4021 PREDICTED: dynein, axonemal, heavy chain 0.797 0.149 0.628 0.0
157130032 3962 dynein heavy chain [Aedes aegypti] gi|10 0.796 0.151 0.643 0.0
338715631 4040 PREDICTED: LOW QUALITY PROTEIN: dynein h 0.801 0.149 0.628 0.0
301763553 4051 PREDICTED: dynein heavy chain 7, axonema 0.797 0.148 0.630 0.0
410969232 4010 PREDICTED: LOW QUALITY PROTEIN: dynein h 0.797 0.150 0.626 0.0
307192830 1778 Dynein heavy chain 7, axonemal [Harpegna 0.811 0.344 0.641 0.0
334330021 3979 PREDICTED: dynein heavy chain 7, axonema 0.796 0.151 0.626 0.0
>gi|270007962|gb|EFA04410.1| hypothetical protein TcasGA2_TC014710 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/610 (67%), Positives = 494/610 (80%), Gaps = 9/610 (1%)

Query: 2    KQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLAD 61
            +QIFK      +KLGD+V+EYN +F+ +ITTKLRNPHY+PE+AVKVTL+NFMIT VGL D
Sbjct: 3011 QQIFKQSGALCLKLGDSVVEYNPDFRLFITTKLRNPHYMPEVAVKVTLVNFMITTVGLED 3070

Query: 62   QLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVL 121
            QLLG  VAK+RPDLEAEKN LI+QGA+NKR LKEIEDKIL++LS+S+GNILEDE+A+Q+L
Sbjct: 3071 QLLGITVAKERPDLEAEKNALILQGAENKRALKEIEDKILEVLSTSQGNILEDETAVQIL 3130

Query: 122  SSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLV 181
            SSSK LSNEI  KQA+AEVTE+ ID AR+EY PIA HS +LFF I  L NIDPMYQYSLV
Sbjct: 3131 SSSKTLSNEIAAKQAIAEVTEQQIDKARMEYKPIAVHSAILFFTIVELANIDPMYQYSLV 3190

Query: 182  WFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLRF 241
            WF NL++ AIDNTEK D+V +R+ DL  YFTYSLY NICRS+FEKDKLLFSL+LAVNL  
Sbjct: 3191 WFMNLFKAAIDNTEKVDDVVERLADLEKYFTYSLYVNICRSLFEKDKLLFSLLLAVNLLK 3250

Query: 242  KAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKHQ 301
              + I +  WMFLLTGGVGLDNP+ NP+ W+VT+SWDELCRLDE   F GI+D F     
Sbjct: 3251 SRDAIDLSEWMFLLTGGVGLDNPNVNPSDWLVTKSWDELCRLDEFPAFVGIKDSFGQNLD 3310

Query: 302  EWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEP 361
            +WK ++D+ +PQD PLP PW  KL  FQK+ VLRCIRFDKVVPAIQ FV  +LG+KF+EP
Sbjct: 3311 KWKAMFDSVEPQDHPLPPPWDTKLSKFQKMLVLRCIRFDKVVPAIQEFVTDNLGKKFIEP 3370

Query: 362  PPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAV 421
            PPFD+ SS+ DS C +PLIF+LTPGADPTAVLLKFADD GFG ++  ALSLGQGQGPIAV
Sbjct: 3371 PPFDLYSSFTDSHCCIPLIFVLTPGADPTAVLLKFADDQGFGAARLFALSLGQGQGPIAV 3430

Query: 422  KLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSV 481
            KLI++G++ G WV+LQNCHLAKS+MP LE++CE+L+P++THPDFRLWLTSYP++ FPV V
Sbjct: 3431 KLIDEGIRNGTWVVLQNCHLAKSFMPTLERICENLTPDSTHPDFRLWLTSYPADHFPVLV 3490

Query: 482  LQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILER 541
            LQNGVK+TNEPPKGLRANI RSYLSDPIS+PE++ SC Q   F++LL+ LCFFHA + ER
Sbjct: 3491 LQNGVKMTNEPPKGLRANIIRSYLSDPISDPEWFESCTQSVPFKRLLYGLCFFHASVQER 3550

Query: 542  IKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSE---------AGGSAGDAKSTEDLII 592
             KFGPLGWNI Y+FNETDL+IS++QL MFL++Y +          G      + T+D   
Sbjct: 3551 RKFGPLGWNIPYEFNETDLRISVMQLLMFLNEYEDIQYDALLYLTGECNYGGRVTDDWDR 3610

Query: 593  RVTSDILQKL 602
            R  S IL+K 
Sbjct: 3611 RCLSTILRKF 3620

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242021167|ref|XP_002431017.1| ciliary dynein heavy chain, putative [Pediculus humanus corporis] gi|212516246|gb|EEB18279.1| ciliary dynein heavy chain, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|390337183|ref|XP_003724506.1| PREDICTED: dynein heavy chain 7, axonemal [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|291391949|ref|XP_002712309.1| PREDICTED: dynein, axonemal, heavy chain 7-like [Oryctolagus cuniculus] Back     alignment and taxonomy information
>gi|157130032|ref|XP_001655526.1| dynein heavy chain [Aedes aegypti] gi|108884409|gb|EAT48634.1| AAEL000307-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|338715631|ref|XP_001917833.2| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 7, axonemal-like [Equus caballus] Back     alignment and taxonomy information
>gi|301763553|ref|XP_002917197.1| PREDICTED: dynein heavy chain 7, axonemal-like [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|410969232|ref|XP_003991100.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 7, axonemal [Felis catus] Back     alignment and taxonomy information
>gi|307192830|gb|EFN75890.1| Dynein heavy chain 7, axonemal [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|334330021|ref|XP_001379252.2| PREDICTED: dynein heavy chain 7, axonemal [Monodelphis domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query755
UNIPROTKB|J9NS43 3346 DNAH7 "Uncharacterized protein 0.762 0.172 0.645 1.5e-241
UNIPROTKB|J9P9Z9 4023 DNAH7 "Uncharacterized protein 0.762 0.143 0.645 6.6e-241
UNIPROTKB|F1PUS6 4026 DNAH7 "Uncharacterized protein 0.762 0.143 0.645 6.6e-241
FB|FBgn0013810 4010 Dhc36C "Dynein heavy chain at 0.757 0.142 0.646 2.3e-240
UNIPROTKB|F1N5R7 4024 DNAH7 "Uncharacterized protein 0.762 0.143 0.640 1.3e-239
ZFIN|ZDB-GENE-070912-282 4001 dnah7 "dynein, axonemal, heavy 0.762 0.143 0.630 5.6e-239
UNIPROTKB|Q8WXX0 4024 DNAH7 "Dynein heavy chain 7, a 0.762 0.143 0.637 8.9e-239
UNIPROTKB|F1NLA9 3256 DNAH7 "Uncharacterized protein 0.762 0.176 0.625 2.8e-236
UNIPROTKB|F1Q4D7 3351 DNAH12 "Uncharacterized protei 0.761 0.171 0.590 5.6e-215
UNIPROTKB|J9NYC7 3960 DNAH12 "Uncharacterized protei 0.761 0.145 0.590 3.3e-214
UNIPROTKB|J9NS43 DNAH7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 2024 (717.5 bits), Expect = 1.5e-241, Sum P(2) = 1.5e-241
 Identities = 372/576 (64%), Positives = 454/576 (78%)

Query:     1 MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLA 60
             +KQ FK G    I+LGD+ IEY  +F+FYITTKLRNPHYLPE +VKVTLLNFMIT  G+ 
Sbjct:  2374 LKQTFKQGGSTCIRLGDSTIEYAPDFRFYITTKLRNPHYLPETSVKVTLLNFMITSEGMQ 2433

Query:    61 DQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQV 120
             DQLLG VVA++RPDLE EK  LI+QGA+NKRQLKEIEDKIL++LSSSEGNILEDE+AI++
Sbjct:  2434 DQLLGIVVARERPDLEEEKQALILQGAENKRQLKEIEDKILEVLSSSEGNILEDETAIKI 2493

Query:   121 LSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSL 180
             LSSSK L+NEI +KQ VAE TEK ID+ R+ Y PIA HST+LFF IA+L NI+PMYQYSL
Sbjct:  2494 LSSSKALANEISQKQEVAEETEKKIDSTRMGYRPIAIHSTILFFSIADLANIEPMYQYSL 2553

Query:   181 VWFDNLYRMAIDNTEKADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAVNLR 240
              WF NLY ++I+N+EK++ + +R++ L  +FTYSLY N+CRS+FEKDKLLFS  L +NL 
Sbjct:  2554 TWFINLYILSIENSEKSEILVKRLQILKDHFTYSLYVNVCRSLFEKDKLLFSFCLTINLL 2613

Query:   241 FKAETISMENWMFLLTGGVGLDNPHKNPTTWMVTQSWDELCRLDELQEFKGIRDHFTAKH 300
                  I+   W FLLTGG+GLDNPH NP TW+  +SWDE+CRLD+L  FK IR  F    
Sbjct:  2614 LHERAINKAEWRFLLTGGIGLDNPHANPCTWLPQKSWDEICRLDDLPSFKTIRREFMHLK 2673

Query:   301 QEWKQIYXXXXXXXXXXXXXXXXKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVE 360
               WK++Y                K + FQ++ ++RC+R DKVVP +Q F+ + LG+ F+E
Sbjct:  2674 DGWKKVYDSLEPHHEVFPENWEDKANEFQRMLIIRCLRPDKVVPMLQEFITNRLGRAFIE 2733

Query:   361 PPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIA 420
             PPPFD+  ++ DS C  PLIF+L+PGADP A LLKFADD G+GGSK S+LSLGQGQGPIA
Sbjct:  2734 PPPFDLSKAFGDSNCCSPLIFVLSPGADPMAALLKFADDQGYGGSKLSSLSLGQGQGPIA 2793

Query:   421 VKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVS 480
             +K++   +K+G WV+LQNCHLA SWMP LEK+CE LSPE THPDFRLWLTSYPS  FPVS
Sbjct:  2794 MKMVEKAIKEGTWVVLQNCHLATSWMPTLEKVCEELSPEATHPDFRLWLTSYPSPSFPVS 2853

Query:   481 VLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILE 540
             VLQNGVK+TNE PKGLRANI RSYL DPIS+PEF+ SC++PE F+KLL+ LCFFHAL+ E
Sbjct:  2854 VLQNGVKMTNEAPKGLRANIIRSYLMDPISDPEFFGSCKKPEEFKKLLYGLCFFHALVQE 2913

Query:   541 RIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSE 576
             R KFGPLGWNI Y+FNETDL+IS+ QL MFL+QY E
Sbjct:  2914 RRKFGPLGWNIPYEFNETDLRISVQQLHMFLNQYEE 2949
GO:0005524 "ATP binding" evidence=IEA
GO:0016887 "ATPase activity" evidence=IEA
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0005858 "axonemal dynein complex" evidence=IEA
GO:0003777 "microtubule motor activity" evidence=IEA
GO:0001539 "ciliary or flagellar motility" evidence=IEA
UNIPROTKB|J9P9Z9 DNAH7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUS6 DNAH7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0013810 Dhc36C "Dynein heavy chain at 36C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5R7 DNAH7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-282 dnah7 "dynein, axonemal, heavy chain 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WXX0 DNAH7 "Dynein heavy chain 7, axonemal" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLA9 DNAH7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q4D7 DNAH12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYC7 DNAH12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8WXX0DYH7_HUMANNo assigned EC number0.62020.79730.1496yesN/A
Q63170DYH7_RATNo assigned EC number0.62680.79730.1483yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query755
pfam03028 706 pfam03028, Dynein_heavy, Dynein heavy chain and re 1e-132
pfam03028706 pfam03028, Dynein_heavy, Dynein heavy chain and re 3e-32
pfam12781228 pfam12781, AAA_9, ATP-binding dynein motor region 5e-29
COG52453164 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] 4e-08
COG52453164 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] 3e-05
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor Back     alignment and domain information 
 Score =  409 bits (1052), Expect = e-132
 Identities = 154/316 (48%), Positives = 210/316 (66%), Gaps = 6/316 (1%)

Query: 261 LDNPHKNPT-TWMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQ 319
           +++   NP   W+  Q W  +CRL EL+EF+G+ D      + WK+ YD++ P++  LPQ
Sbjct: 1   IESTVPNPKLDWLTVQQWGSICRLSELEEFRGLDDDIEKNAKRWKKWYDSEAPEEEKLPQ 60

Query: 320 PWQDKLDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPL 379
            W+D+   FQKL +LR +R D++  A +NFV   LG+KFVEP P D+   Y +S  + P+
Sbjct: 61  EWKDRKSAFQKLLLLRALRPDRMTYAARNFVSEKLGEKFVEPQPLDLSKIYEESSPSTPI 120

Query: 380 IFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKLINDGLKKGDWVLLQNC 439
            F+L+PG DP+  + K A  MGFG  KF ++SLGQGQGPIA K I    K G WV+LQN 
Sbjct: 121 FFILSPGVDPSKDVEKLAKKMGFGK-KFHSVSLGQGQGPIAEKAIETAAKSGHWVMLQNI 179

Query: 440 HLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRAN 499
           HLA SW+P LEK  ESL+P  +HPDFRL+LT+ P+   P+ +LQN +KITNEPP GL+AN
Sbjct: 180 HLAPSWLPTLEKKLESLTPG-SHPDFRLFLTAEPAPSIPIGLLQNSIKITNEPPTGLKAN 238

Query: 500 INRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETD 559
           + R+  S      E    C++P  F+++LF LCFFHA++ ER KFGPLGWN  Y+FNE D
Sbjct: 239 LLRALSSF---TQETLEMCKKPAEFKRILFLLCFFHAVVQERRKFGPLGWNKSYEFNEGD 295

Query: 560 LKISLVQLKMFLDQYS 575
           L+ISL  L  +LD  +
Sbjct: 296 LRISLDVLDNYLDANA 311

This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained. Length = 706
>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor Back     alignment and domain information
>gnl|CDD|193257 pfam12781, AAA_9, ATP-binding dynein motor region D5 Back     alignment and domain information
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 755
PF03028707 Dynein_heavy: Dynein heavy chain and region D6 of 100.0
KOG3595|consensus1395 100.0
COG52453164 DYN1 Dynein, heavy chain [Cytoskeleton] 100.0
PF12781228 AAA_9: ATP-binding dynein motor region D5; PDB: 3V 100.0
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 97.09
PF12781228 AAA_9: ATP-binding dynein motor region D5; PDB: 3V 96.83
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 96.47
PHA02244383 ATPase-like protein 95.12
COG5271 4600 MDN1 AAA ATPase containing von Willebrand factor t 92.55
PF12774231 AAA_6: Hydrolytic ATP binding site of dynein motor 92.46
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 92.43
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 86.33
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella Back     alignment and domain information 
Probab=100.00  E-value=6.1e-101  Score=914.42  Aligned_cols=474  Identities=42%  Similarity=0.814  Sum_probs=351.1

Q ss_pred             CCCCCC-CCCHHhHHHHHhhhcCcchhchhHHHhhCHHhHHHhhcCCCCCCCCCCCchhhhhhHHHHHHHHHhhccccch
Q psy12682        265 HKNPTT-WMVTQSWDELCRLDELQEFKGIRDHFTAKHQEWKQIYDAQQPQDAPLPQPWQDKLDVFQKLCVLRCIRFDKVV  343 (755)
Q Consensus       265 ~~~p~~-wl~~~~w~~i~~L~~l~~f~~l~~~i~~~~~~W~~~~~~~~p~~~~lP~~~~~~l~~fqklllir~lRpdrl~  343 (755)
                      .+||.+ ||++++|.+|+.|+++|.|.+|.++|..+.++|++|+++..||..++|..|...+++|||+||+||+||||+.
T Consensus         4 ~~~p~~~wl~~~~w~~i~~L~~l~~F~~l~~~~~~~~~~W~~~~~~~~pe~~~~P~~~~~~l~~fqklllir~lRpDrl~   83 (707)
T PF03028_consen    4 IPNPIPSWLSDEQWQNICALSKLPSFKGLCESIESNPEEWKQWFESDSPEEEPLPSPWEENLTPFQKLLLIRALRPDRLI   83 (707)
T ss_dssp             -GGGTTTS-HHHHHHHHHHHHC-GGGSSHHHHHHHTHHHHHHHC-SS-SS-----HHHHHHHHHHHHHHHHHHH-CCCHH
T ss_pred             CCCCCcCcCCHHHHHHHHHHhCCcchHHHHHHHHhCHHHHHHHHcCCCcccccCChhhhhcccHHHHHHHHHHhCccHhH
Confidence            457765 9999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCccCCCccchhhhhccCCCCccEEEecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCchHHHHHH
Q psy12682        344 PAIQNFVIHDLGQKFVEPPPFDIVSSYNDSVCTVPLIFLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQGPIAVKL  423 (755)
Q Consensus       344 ~a~~~~v~~~lG~~f~~~~~~~l~~~~~~s~~~tPii~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~~~A~~~  423 (755)
                      .++++||..+||..|++++++|++++|.+|++++|+||+++||+||+..|.++|+++++.++++.+||||+||+..|+++
T Consensus        84 ~~~~~~v~~~lg~~~~~~~~~~l~~~~~~s~~~~Pil~~~s~g~Dp~~~i~~lA~~~~~~~~~~~~islG~~~~~~a~~~  163 (707)
T PF03028_consen   84 AAMRKFVSSVLGSRFVEPPPFDLESIYEESSPTTPILFILSPGSDPSSEIEQLAKKKGFGNKKLQSISLGSGQGPEAEKA  163 (707)
T ss_dssp             HHHHHHHHHHH-TTTTS-----HHHHHHCTTTTC-EEEEE-TT--THHHHHHHHHCTT-----EEEEETTSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCchhhcCCCCCHHHHHHhcCCCCceEEEeCCCCChHHHHHHHHHHHhhhhhheeecCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999984346899999999999999999


Q ss_pred             HHHHHhcCCeEEecccccccchhHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCccchHHHHHHH
Q psy12682        424 INDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRS  503 (755)
Q Consensus       424 I~~a~~~G~WVlLqN~HL~~swl~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~glk~nl~~~  503 (755)
                      |++|+++|+||+||||||+++||+.|+++++.+.. +.|++|||||||+|++.||++|||+|+|+++|||+|+|+||.++
T Consensus       164 l~~a~~~G~Wv~L~N~HL~~~wl~~Le~~l~~~~~-~~h~~FRL~lt~~~~~~~P~~lL~~s~kv~~E~p~gik~~l~~~  242 (707)
T PF03028_consen  164 LKEAAKEGHWVLLQNCHLAPSWLPQLEKKLESLSP-EIHPNFRLFLTSEPSPSFPISLLQSSIKVTYEPPPGIKANLLRT  242 (707)
T ss_dssp             HHHHHHHTSEEEEETGGGGCCCHHCHHHHHHC-SS-TTSTT-EEEEEEESSTTS-HHHHHCSEEEEE---SSHHHHHHHH
T ss_pred             HHHHhcCCeEEEcccchhHHHHHHHHHHHHhcccc-ccccceEEEEEecCcccCCHHHHHcccceeeCChhHHHHHHHHH
Confidence            99999999999999999999999999999998865 78999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCChhhhhhcCChhhHHHHHHHHHHHHHhHHHHhhhCCCccccccccChhhHHHHHHHHHHHHhhc--cCC----
Q psy12682        504 YLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQY--SEA----  577 (755)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~k~l~f~L~~fHavl~eR~~fgplGwn~~Y~Fn~sDl~~s~~~l~~~l~~~--~~i----  577 (755)
                      |.+  +. ++.++.|.++.+|++++|+||||||||+||++|||+|||++||||++||.+|++++.++++..  +.|    
T Consensus       243 ~~~--~~-~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~~~ipw~~  319 (707)
T PF03028_consen  243 YNS--IS-QDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSPESIPWDA  319 (707)
T ss_dssp             HCC-----SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSCCCTTHHH
T ss_pred             HHh--hh-hhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhccccCCcHHH
Confidence            986  33 356777778889999999999999999999999999999999999999999999999999986  333    


Q ss_pred             ----------C---------------------------------------------------------------------
Q psy12682        578 ----------G---------------------------------------------------------------------  578 (755)
Q Consensus       578 ----------G---------------------------------------------------------------------  578 (755)
                                |                                                                     
T Consensus       320 l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~~i~~lp~~~~p~~~GL~~  399 (707)
T PF03028_consen  320 LRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPDSGSYSIPDSNSLEDYIEWIEQLPDEDPPEWFGLPP  399 (707)
T ss_dssp             HHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-TTTEE----SSHHHHHHHHCTS-SS--CCCCTS-T
T ss_pred             HHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccCCCCccCCccccHHHHHHHHHhCCCCCCccccCCCc
Confidence                      2                                                                     


Q ss_pred             -------------------------CC--CCCCCChHHHHHHHHHHHHHhCCCCCChHHHhhhCC-CCccchhHHHHHHH
Q psy12682        579 -------------------------GS--AGDAKSTEDLIIRVTSDILQKLPPNFNTVQALEKYP-TMYSQSMNTVLVQE  630 (755)
Q Consensus       579 -------------------------~~--~~~~~~~~~~v~~~~~~il~~lP~~~~~~~~~~~~~-~~~~~~l~~vl~qE  630 (755)
                                               ..  ++.+.+.++.+.+++.++++++|..++.+.+..+++ ....+|+++|+.||
T Consensus       400 na~~~~~~~~s~~ll~~l~~l~~~~~~~~~~~~~s~~~~~~~~i~~l~~~lp~~~~~~~~~~~~~~~~~~~Pl~~fl~qE  479 (707)
T PF03028_consen  400 NAEISLQQQESRELLSSLLSLQPRESSSSGGSSKSREEQVLSLIKELLEKLPQLFPIEEVKSKRPAENSNDPLNRFLEQE  479 (707)
T ss_dssp             THHHHHHHHHHHHHHHHHHHCCCTTT----------HHHHCT-----------------------------HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhhcccccccccccccccchhHHHHHHHHHHHHhhccCCHHHHhccCCccccCCceeeeeHHH
Confidence                                     01  122344677888999999999999999988877664 45688999999999


Q ss_pred             HHHHHHHHHHHhhh----------hccccHhHHHHHHhhhcCCCCcccccccCCCCCChHHHHHHHHHHHHHHhHhHhhh
Q psy12682        631 MGRFNVLLTTIRNS----------LIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVII  700 (755)
Q Consensus       631 ~~r~n~ll~~i~~s----------~~~ms~~le~~~~~l~~~~VP~~W~~~~y~s~k~L~sw~~dl~~R~~~~~~W~~~~  700 (755)
                      +++||+||+.||+|          .++||+++++++++|..|+||..|.+.+|||.++|++|++||.+|++|+++|    
T Consensus       480 ~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~~s~~~l~~Wl~dL~~Rv~~l~~w----  555 (707)
T PF03028_consen  480 IERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSYPSPKPLSSWLQDLIKRVEQLQRW----  555 (707)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S---SS--HHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCCCCCCCHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999          7799999999999999999999999999999999999999999999999999    


Q ss_pred             hccC-CCCccccceecCcccchhHHHHHHHHhhhhh---ccccceEEeeeceee
Q psy12682        701 TYQS-GSPEFDVKTHQSGQWFTKHIEVVITDPMSTH---LISRLCIQRDIGYYD  750 (755)
Q Consensus       701 ~~~~-g~P~~~~~~wl~gff~Pq~flta~~Q~~ar~---~ld~~~l~~~~~~~~  750 (755)
                       ... |.|.+   |||||||||+|||||++|++||+   |+|++.+.++++..+
T Consensus       556 -~~~~~~p~~---~wLs~ff~P~aFLtAlrQ~~AR~~~~~ld~L~l~~~v~~~~  605 (707)
T PF03028_consen  556 -ASNSGQPKS---FWLSGFFNPQAFLTALRQEYARKNKIPLDQLTLSFEVTSSE  605 (707)
T ss_dssp             -HH----------B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE-----
T ss_pred             -HhccCCceE---EecccccChHHHHHHHHHHHHHhcCcCchhcceeEEEEecc
Confidence             887 99999   99999999999999999999995   999999999998644

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
>KOG3595|consensus Back     alignment and domain information
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] Back     alignment and domain information
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query755
3vkg_A 3245 X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn 2e-61
3vkh_A 3367 X-Ray Structure Of A Functional Full-Length Dynein 2e-61
4ai6_A2695 Dynein Motor Domain - Adp Complex Length = 2695 2e-10
4ai6_A2695 Dynein Motor Domain - Adp Complex Length = 2695 4e-07
3qmz_A2486 Crystal Structure Of The Cytoplasmic Dynein Heavy C 3e-10
3qmz_A2486 Crystal Structure Of The Cytoplasmic Dynein Heavy C 2e-07
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/599 (27%), Positives = 286/599 (47%), Gaps = 37/599 (6%)
Query: 2    KQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLAD 61
            K+I K G    I+LGD  ++++ +F  ++ T+    H+ P++  +VT +NF +TP  L  
Sbjct: 2251 KEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQS 2310
Query: 62   QLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVL 121
            Q L   +  +RPD   +++ L+    + + +L+ +E  +L  LS + GNIL+D+S I  L
Sbjct: 2311 QCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTL 2370
Query: 122  SSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSLV 181
             + K  + EI  K    E   + I      Y P+A   + ++F +  L     +YQ+SL 
Sbjct: 2371 ETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSLR 2429
Query: 182  WF-DNLYRMAIDNTEKAD--NVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAV- 237
             F D  Y +  +N    D  +  +R+  LS       +  + R++   DKL F+L L + 
Sbjct: 2430 AFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTII 2489
Query: 238  NLRFKAETISMENWMFLLTGGVGLDN-----PHKNPTTWMVTQSWDELCRLDELQEFKGI 292
            +++  +  I    W FLL GG  L +     P  +       Q W  +C   ++  F  +
Sbjct: 2490 SVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKW-LICLRQQVPSFSKL 2548
Query: 293  RDHFTAKHQEWKQIYXXXXX-----------XXXXXXXXXXXKLDVFQKLCVLRCIRFDK 341
             DH      +WKQ +                            +  F+K+ +++    D+
Sbjct: 2549 VDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDR 2608
Query: 342  VVPAIQNFVIHDLGQKFVEPPPFDIVSSYNDSV-CTVPLIFLLTPGADPTAVLLKFADDM 400
            V+    +FV    G+ F+     D+ +     V  + PL+    PG D ++ +    DD+
Sbjct: 2609 VLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKV----DDL 2664
Query: 401  GFGGSK-FSALSLGQGQG-PIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSP 458
                 K + + ++G  +G  +A K I    K G WVLL+N HLA  W+  LEK   SLSP
Sbjct: 2665 ALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSP 2724
Query: 459  ETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSC 518
               HP FRL++TS      P ++L+     + E P G++AN+  +++  P +  +     
Sbjct: 2725 ---HPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMD----- 2776
Query: 519  QQPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEA 577
            +QP    ++ F L +FHA+I ER+++ PLGW   ++FN+ DL+ +L  +  ++D YS+ 
Sbjct: 2777 KQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKG 2835
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367 Back     alignment and structure
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 Back     alignment and structure
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 Back     alignment and structure
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 Back     alignment and structure
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query755
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 0.0
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 3e-34
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
 Score =  756 bits (1953), Expect = 0.0
 Identities = 161/606 (26%), Positives = 289/606 (47%), Gaps = 33/606 (5%)

Query: 1    MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLA 60
             K+I K G    I+LGD  ++++ +F  ++ T+    H+ P++  +VT +NF +TP  L 
Sbjct: 2250 NKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQ 2309

Query: 61   DQLLGTVVAKDRPDLEAEKNQLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQV 120
             Q L   +  +RPD   +++ L+    + + +L+ +E  +L  LS + GNIL+D+S I  
Sbjct: 2310 SQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVIST 2369

Query: 121  LSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHSTVLFFCIANLGNIDPMYQYSL 180
            L + K  + EI  K    E   + I      Y P+A   + ++F +  L     +YQ+SL
Sbjct: 2370 LETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFH-LYQFSL 2428

Query: 181  VWFDNLYRMAIDNTEK---ADNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILAV 237
              F +++   ++N        +  +R+  LS       +  + R++   DKL F+L L +
Sbjct: 2429 RAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTI 2488

Query: 238  N-LRFKAETISMENWMFLLTGGVGLD---NPHKNPTTWMVTQSWDEL-CRLDELQEFKGI 292
              ++  +  I    W FLL GG  L           + + T     L C   ++  F  +
Sbjct: 2489 ISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKL 2548

Query: 293  RDHFTAKHQEWKQIYDAQQPQDAPLPQPW-----------QDKLDVFQKLCVLRCIRFDK 341
             DH      +WKQ +   Q  +  +P+ W              +  F+K+ +++    D+
Sbjct: 2549 VDHIQQNSSDWKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDR 2608

Query: 342  VVPAIQNFVIHDLGQKFVEPPPFDIVSSY-NDSVCTVPLIFLLTPGADPTAVLLKFADDM 400
            V+    +FV    G+ F+     D+ +    +   + PL+    PG D ++ +   A  +
Sbjct: 2609 VLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQL 2668

Query: 401  GFGGSKFSALSLGQGQG-PIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPE 459
                 ++ + ++G  +G  +A K I    K G WVLL+N HLA  W+  LEK   SLSP 
Sbjct: 2669 ---HKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSLSP- 2724

Query: 460  TTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQ 519
              HP FRL++TS      P ++L+     + E P G++AN+  +++  P +        +
Sbjct: 2725 --HPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRM-----DK 2777

Query: 520  QPERFRKLLFNLCFFHALILERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQYSEAGG 579
            QP    ++ F L +FHA+I ER+++ PLGW   ++FN+ DL+ +L  +  ++D YS+   
Sbjct: 2778 QPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRS 2837

Query: 580  SAGDAK 585
            +    K
Sbjct: 2838 NIDPDK 2843
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query755
3vkg_A3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 100.0
4akg_A2695 Glutathione S-transferase class-MU 26 kDa isozyme 100.0
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 97.59
4akg_A 2695 Glutathione S-transferase class-MU 26 kDa isozyme 90.28
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 82.8
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 82.77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-170  Score=1644.23  Aligned_cols=725  Identities=26%  Similarity=0.467  Sum_probs=593.6

Q ss_pred             CCceEeeCCeEEEEeCCeeeeeCCCceEEEEeCCCCCCCChhhhhceEEEEeEeChhhHHHHHHHHHHhhhcccHHHHHH
Q psy12682          1 MKQIFKSGAGWSIKLGDTVIEYNDNFKFYITTKLRNPHYLPEIAVKVTLLNFMITPVGLADQLLGTVVAKDRPDLEAEKN   80 (755)
Q Consensus         1 ~k~~~~~gg~~~I~igd~~id~~p~FrL~L~Tk~~np~~~pei~~~vtvINFtvT~~gLe~qlL~~vv~~E~PeLe~~r~   80 (755)
                      .|+++|+||+.+|+|||++|||||+|||||+||++||||+||+++|||+||||||++|||+|||+.||++|+||||++|+
T Consensus      2250 ~k~~~k~gg~~~I~lGdk~idy~~~FrlyltTkl~np~y~Pev~~kvtlINFtvT~~GLedQLL~~vv~~ErPeLE~~r~ 2329 (3245)
T 3vkg_A         2250 NKEIRKKGGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRS 2329 (3245)
T ss_dssp             ------------------------CCCEEEEECCTTCCCCHHHHHTSEEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHhcCceEEEEECCeeEecCCCceEEEEecCCCCCCCHHHHhheEEEEEEecHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHh
Q psy12682         81 QLIVQGADNKRQLKEIEDKILQILSSSEGNILEDESAIQVLSSSKVLSNEIQEKQAVAEVTEKSIDAARLEYTPIAAHST  160 (755)
Q Consensus        81 ~L~~~~~~~k~~L~~lEd~LL~~Ls~s~g~ILdd~~lI~tL~~~K~~s~eI~~kl~e~~~~~~~i~~~r~~Y~pvA~~~s  160 (755)
                      +|+++++++|++|++|||+||+.|++|+||||||++||++|+++|.+|.+|++|++++++|+++|+++|+.|||||.|||
T Consensus      2330 ~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK~~s~eI~~kl~~a~~te~~I~~~R~~YrpvA~r~s 2409 (3245)
T 3vkg_A         2330 DLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCS 2409 (3245)
T ss_dssp             HHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCcccccHHHHHHHHHHHhccCCCC---CCHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHH-
Q psy12682        161 VLFFCIANLGNIDPMYQYSLVWFDNLYRMAIDNTEKA---DNVPQRIEDLSGYFTYSLYTNICRSIFEKDKLLFSLILA-  236 (755)
Q Consensus       161 ~lyf~l~~L~~i~~mYqfSL~~f~~lf~~~i~~~~~~---~~~~~r~~~L~~~~t~~vy~~vsrsLf~~~kllf~fll~-  236 (755)
                      .|||++.+|+.|| ||||||+||+++|..+|.+++++   +++++|+++|++++|+.+|.+||||||++||++|+|+|| 
T Consensus      2410 ~LyF~i~dL~~i~-mYQfSL~~F~~lF~~si~~s~~~~~~~~~~~Rl~~l~~~lt~~vy~~v~RgLFekdKLlFs~~l~~ 2488 (3245)
T 3vkg_A         2410 RVYFAMEELSQFH-LYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTI 2488 (3245)
T ss_dssp             HHHHHHTGGGGST-TCCCCHHHHHHHHHHHHSSCGGGSSCCCHHHHHHHHHHHHHHHHHHHHTTTSCGGGTTHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-eeeCCHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            9999999999999 99999999999999999988765   789999999999999999999999999999999999999 


Q ss_pred             HHHHhhcCCCCHHHHHHHhhcCCCCCCCCC--CCCC-CCCHHhHHHHHhhh-cCcchhchhHHHhhCHHhHHHhhcCCCC
Q psy12682        237 VNLRFKAETISMENWMFLLTGGVGLDNPHK--NPTT-WMVTQSWDELCRLD-ELQEFKGIRDHFTAKHQEWKQIYDAQQP  312 (755)
Q Consensus       237 ~~i~~~~g~i~~~e~~~ll~g~~~~~~~~~--~p~~-wl~~~~w~~i~~L~-~l~~f~~l~~~i~~~~~~W~~~~~~~~p  312 (755)
                      +.++...|.++++||++|++|+...+...+  +|.+ |++++.|.+|+.|+ .+|.|+++.+++..+.++|+.|+++..|
T Consensus      2489 ~~i~~~~~~i~~~E~~flL~g~~~~~~~~~~~~~~~~wl~~~~w~~i~~L~~~l~~F~~l~~~~~~~~~~W~~~~~s~~p 2568 (3245)
T 3vkg_A         2489 ISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQV 2568 (3245)
T ss_dssp             HHTTTSTTCCCHHHHHHHHHTTTTGGGCCCCCGGGTTTCCHHHHHHHHHHHHHCGGGTTHHHHHHHTHHHHHHHTCSSCS
T ss_pred             HHHHhccCCCCHHHHHHHhcCCccccccccccCCccccCCHHHHHHHHHHHhhChhhhhHHHHHHhCHHHHHHHhcccCc
Confidence            477777899999999999999877654332  4444 99999999999998 8999999999999999999999999999


Q ss_pred             CCCCCCCchhhh-----------hhHHHHHHHHHhhccccchHHHHHHHHHHhCCCccCCCccchhhhhc-cCCCCccEE
Q psy12682        313 QDAPLPQPWQDK-----------LDVFQKLCVLRCIRFDKVVPAIQNFVIHDLGQKFVEPPPFDIVSSYN-DSVCTVPLI  380 (755)
Q Consensus       313 ~~~~lP~~~~~~-----------l~~fqklllir~lRpdrl~~a~~~~v~~~lG~~f~~~~~~~l~~~~~-~s~~~tPii  380 (755)
                      |....|++|...           +++|||||++||+||||+..|+++||.+.||.+|+++|++||+.+|+ +|+++||+|
T Consensus      2569 e~~~pp~~w~~~~~~~~~~~~~~l~~fqkLlllr~lRpDr~~~a~~~fV~~~lG~~fv~~~~~dl~~~~~~es~~~tPli 2648 (3245)
T 3vkg_A         2569 GEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTQELDMANIVEKEVKSSSPLL 2648 (3245)
T ss_dssp             SCCCCCTTHHHHHHHHSSCCCHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHSCTTTTCC--CCHHHHHHHSSCTTSCEE
T ss_pred             ccccCccccccccccccccccchhhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCccCCCCCCCHHHHHhccCCCCccEE
Confidence            986555889755           89999999999999999999999999999999999999999999999 999999999


Q ss_pred             EecCCCCChHHHHHHHHHhcCCCCCCceEEecCCCch-HHHHHHHHHHHhcCCeEEecccccccchhHHHHHHHhhhCCC
Q psy12682        381 FLLTPGADPTAVLLKFADDMGFGGSKFSALSLGQGQG-PIAVKLINDGLKKGDWVLLQNCHLAKSWMPVLEKMCESLSPE  459 (755)
Q Consensus       381 ~ils~g~DP~~~i~~lA~~~~~~~~~l~~iSLG~gq~-~~A~~~I~~a~~~G~WVlLqN~HL~~swl~~Le~ile~l~~~  459 (755)
                      ||+|||+||+..|.+||+++|.   +++.|||||||| +.|+++|+.|+++|+||+||||||+++||++||++++.+   
T Consensus      2649 filSpG~DP~~~l~~lA~~~~~---~~~~iSLGqgQg~~~A~~~i~~a~~~G~WV~LqNcHL~~sWl~~LEk~le~~--- 2722 (3245)
T 3vkg_A         2649 LCSVPGYDASSKVDDLALQLHK---QYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWLVQLEKKLHSL--- 2722 (3245)
T ss_dssp             CEECTTCCCHHHHHHHHHHHTC---CCCCCBTTSHHHHHHHHHHHHHHHHHTCEEECBCGGGCTTTHHHHHHHHHTC---
T ss_pred             EEeCCCCChHHHHHHHHHHhCC---CcEEEECCCCccHHHHHHHHHHHHHcCCEEEEechhhhHhHHHHHHHHHHcc---
Confidence            9999999999999999999974   899999999999 599999999999999999999999999999999999976   


Q ss_pred             CCCCCceEEEEeCCCCCCcHHHHhhceEeccCCccchHHHHHHHhcCCCCCChhhhhhcCChhhHHHHHHHHHHHHHhHH
Q psy12682        460 TTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSYLSDPISNPEFYNSCQQPERFRKLLFNLCFFHALIL  539 (755)
Q Consensus       460 ~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~glk~nl~~~~~~~~~~~~~~~~~~~~~~~~k~l~f~L~~fHavl~  539 (755)
                      +.|++|||||||+|++.||++|||+|+|||+|||+|+|+||+|+|.+  ++ ++.+  |.++..|++++|+||||||||+
T Consensus      2723 ~~h~~FRLwLTsep~~~fP~~iLq~siKit~EpP~GlkaNl~rs~~~--~~-~~~~--~~~~~~~~~llf~L~fFHAvvq 2797 (3245)
T 3vkg_A         2723 SPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIG--IP-ATRM--DKQPAERSRIYFLLAWFHAIIQ 2797 (3245)
T ss_dssp             CCCTTCEEECCEESCTTSCHHHHHTSEECCBCCCSSHHHHHHHHHTT--SC-HHHH--TSSSTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeEEEEecCCCCCCHHHHHhhhHheeCCChhHHHHHHHHHHh--CC-HHHh--ccCcHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999986  43 3444  4567789999999999999999


Q ss_pred             HHhhhCCCccccccccChhhHHHHHHHHHHHHhhc---------cCC--------------C------------------
Q psy12682        540 ERIKFGPLGWNIQYQFNETDLKISLVQLKMFLDQY---------SEA--------------G------------------  578 (755)
Q Consensus       540 eR~~fgplGwn~~Y~Fn~sDl~~s~~~l~~~l~~~---------~~i--------------G------------------  578 (755)
                      |||||||+|||++|+||++||++|+++|++|++++         +.|              |                  
T Consensus      2798 ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~ 2877 (3245)
T 3vkg_A         2798 ERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2877 (3245)
T ss_dssp             HGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHH
T ss_pred             HHHHhCccccCcccccchHHHHHHHHHHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999875         233              2                  


Q ss_pred             --------------------------------------------------------------------------CCCCC-
Q psy12682        579 --------------------------------------------------------------------------GSAGD-  583 (755)
Q Consensus       579 --------------------------------------------------------------------------~~~~~-  583 (755)
                                                                                                .+|++ 
T Consensus      2878 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~ 2957 (3245)
T 3vkg_A         2878 LFTPSAFNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGED 2957 (3245)
T ss_dssp             HSSGGGGSSSCEEEGGGTEECCCCSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             HcCHhhcCCcccCCCCCCCCCCCCCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCccccccc
Confidence                                                                                      11110 


Q ss_pred             ----------------CCChHHHHHHHHHHHHHhCCCCCChHHHhhhCCCCccchhHHHHHHHHHHHHHHHHHHhhh---
Q psy12682        584 ----------------AKSTEDLIIRVTSDILQKLPPNFNTVQALEKYPTMYSQSMNTVLVQEMGRFNVLLTTIRNS---  644 (755)
Q Consensus       584 ----------------~~~~~~~v~~~~~~il~~lP~~~~~~~~~~~~~~~~~~~l~~vl~qE~~r~n~ll~~i~~s---  644 (755)
                                      +.++++.|.+++++++++||+.||..   .+++..+.+||++||.|||+|||+||+.||+|   
T Consensus      2958 ~~~s~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~lP~~~~~~---~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~ 3034 (3245)
T 3vkg_A         2958 DQVSGSSKKESSSSSSEDKGKAKLRATITEWTKLLPKPLKQL---KRTTQNIKDPLFRCFEREISTGGKLVKKITNDLAN 3034 (3245)
T ss_dssp             ------------CHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCcHHHHHHHHHHHHHhCccccchh---hccccccCChHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                            11244568899999999999999842   34555677999999999999999999999999   


Q ss_pred             -------hccccHhHHHHHHhhhcCCCCcccccccCCCCCChHHHHHHHHHHHHHHhHhHhhhhccC--CCCccccceec
Q psy12682        645 -------LIVMSFDLEEVYKSIVVGKIPGAWAKKSYPSLKPLGSYVQDFLHRLEFLQHIMVIITYQS--GSPEFDVKTHQ  715 (755)
Q Consensus       645 -------~~~ms~~le~~~~~l~~~~VP~~W~~~~y~s~k~L~sw~~dl~~R~~~~~~W~~~~~~~~--g~P~~~~~~wl  715 (755)
                             +++||++||++++||++|+||+.|.+.+|||+|||++|+.||++|++|+++|     +++  |.|.+   |||
T Consensus      3035 L~~aikG~i~mS~~le~l~~sl~~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W-----~~~~~~~p~~---~WL 3106 (3245)
T 3vkg_A         3035 LLELISGNIKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEI-----SESSDYSSIQ---VWL 3106 (3245)
T ss_dssp             HC-----------------------------CCSCCCSSCCHHHHHHHHHHHHHHHHHH-----HHC----------CCG
T ss_pred             HHHHhCCCCcCCHHHHHHHHHHHcCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHH-----HhcCCCCCce---Eec
Confidence                   8899999999999999999999999999999999999999999999999999     876  69999   999


Q ss_pred             CcccchhHHHHHHHHhhhhh---ccccceE-Eeeece
Q psy12682        716 SGQWFTKHIEVVITDPMSTH---LISRLCI-QRDIGY  748 (755)
Q Consensus       716 ~gff~Pq~flta~~Q~~ar~---~ld~~~l-~~~~~~  748 (755)
                      ||||||||||||++|++||+   |+|++++ .++|+.
T Consensus      3107 sgff~Pq~FLTA~~Q~~ARk~~~plD~l~l~~~~V~~ 3143 (3245)
T 3vkg_A         3107 GGLLNPEAYITATRQSASQLNGWSLENLRLHASSLGK 3143 (3245)
T ss_dssp             GGSSCHHHHHHHHHHHHHHHTC------CCCBC----
T ss_pred             CCCcchHHHHHHHHHHHHHHhCCCCccceeeeEEEec
Confidence            99999999999999999994   9999999 888864
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query755
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 88.44
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 82.98
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.44  E-value=1.7  Score=40.02  Aligned_cols=121  Identities=12%  Similarity=0.102  Sum_probs=82.6

Q ss_pred             cEEEecCCCCChHHHHHHHHHhcC-CCCC--CceEEecCCCc--h-HHHHHHHHHHHhc---CCe--EEecccccccc-h
Q psy12682        378 PLIFLLTPGADPTAVLLKFADDMG-FGGS--KFSALSLGQGQ--G-PIAVKLINDGLKK---GDW--VLLQNCHLAKS-W  445 (755)
Q Consensus       378 Pii~ils~g~DP~~~i~~lA~~~~-~~~~--~l~~iSLG~gq--~-~~A~~~I~~a~~~---G~W--VlLqN~HL~~s-w  445 (755)
                      =+||.-++|...+.....+|+... ...+  .+..|. ..|.  + +.++.+++.+...   |+|  |++.+||.... -
T Consensus        17 ~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~-~~~~~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~a   95 (198)
T d2gnoa2          17 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQA   95 (198)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEe-CCcCCCCHHHHHHHHHHHhhCcccCCCEEEEEeCccccchhh
Confidence            367777788988888888887532 1112  244443 2232  2 4567777777654   664  56799997664 3


Q ss_pred             hHHHHHHHhhhCCCCCCCCceEEEEeCCCCCCcHHHHhhceEeccCCccchHHHHHHHh
Q psy12682        446 MPVLEKMCESLSPETTHPDFRLWLTSYPSNLFPVSVLQNGVKITNEPPKGLRANINRSY  504 (755)
Q Consensus       446 l~~Le~ile~l~~~~~h~~FRLwLts~p~~~fP~~lLq~s~Kv~~Epp~glk~nl~~~~  504 (755)
                      ...|-+.+|     +++++=+.+|+|.....++..|..+|..+.+.+|...+..+....
T Consensus        96 qNaLLK~LE-----EPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~~~~~~~~~~~  149 (198)
T d2gnoa2          96 ANAFLKALE-----EPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKI  149 (198)
T ss_dssp             HHHTHHHHH-----SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHh-----CCCCCceeeeccCChhhCHHHHhcceEEEeCCCchHHHHHHHHHH
Confidence            345666676     456788899999888899999999999999998877665554443
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure